locus-tag class description HCD_00005 PF01029 NusB family HCD_00010 PF00885 6,7-dimethyl-8-ribityllumazine synthase HCD_00015 PF00793 DAHP synthetase I family HCD_00020 PF00484 Carbonic anhydrase HCD_00025 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HCD_00030 PF02569 Pantoate-beta-alanine ligase HCD_00035 PF00118 TCP-1/cpn60 chaperonin family HCD_00040 PF00166 Chaperonin 10 Kd subunit HCD_00055 PF01370 NAD dependent epimerase/dehydratase family HCD_00060 PF16363 GDP-mannose 4,6 dehydratase HCD_00105 PF02575 YbaB/EbfC DNA-binding family HCD_00110 PF02261 Aspartate decarboxylase HCD_00115 PF10431 C-terminal, D2-small domain, of ClpB protein HCD_00115 PF17871 AAA lid domain HCD_00115 PF07724 AAA domain (Cdc48 subfamily) HCD_00115 PF00004 ATPase family associated with various cellular activities (AAA) HCD_00115 PF02861 Clp amino terminal domain, pathogenicity island component HCD_00120 PF02617 ATP-dependent Clp protease adaptor protein ClpS HCD_00125 PF00582 Universal stress protein family HCD_00135 PF07509 Protein of unknown function (DUF1523) HCD_00140 PF00180 Isocitrate/isopropylmalate dehydrogenase HCD_00145 PF00285 Citrate synthase, C-terminal domain HCD_00155 PF00884 Sulfatase HCD_00155 PF08019 Phosphoethanolamine transferase EptA/EptB HCD_00160 PF01569 PAP2 superfamily HCD_00165 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HCD_00170 PF00486 Transcriptional regulatory protein, C terminal HCD_00170 PF00072 Response regulator receiver domain HCD_00205 PF08275 DNA primase catalytic core, N-terminal domain HCD_00205 PF01807 CHC2 zinc finger HCD_00205 PF13662 Toprim domain HCD_00205 PF16730 DnaG-primase C-terminal, helicase-binding domain HCD_00225 PF00872 Transposase, Mutator family HCD_00255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HCD_00255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HCD_00260 PF02504 Fatty acid synthesis protein HCD_00265 PF01783 Ribosomal L32p protein family HCD_00275 PF00334 Nucleoside diphosphate kinase HCD_00280 PF02773 S-adenosylmethionine synthetase, C-terminal domain HCD_00280 PF02772 S-adenosylmethionine synthetase, central domain HCD_00280 PF00438 S-adenosylmethionine synthetase, N-terminal domain HCD_00285 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HCD_00285 PF00132 Bacterial transferase hexapeptide (six repeats) HCD_00295 PF00121 Triosephosphate isomerase HCD_00300 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HCD_00305 PF00890 FAD binding domain HCD_00305 PF02910 Fumarate reductase flavoprotein C-term HCD_00310 PF13183 4Fe-4S dicluster domain HCD_00310 PF13085 2Fe-2S iron-sulfur cluster binding domain HCD_00315 PF13091 PLD-like domain HCD_00330 PF01084 Ribosomal protein S18 HCD_00335 PF00436 Single-strand binding protein family HCD_00340 PF01250 Ribosomal protein S6 HCD_00345 PF06144 DNA polymerase III, delta subunit HCD_00350 PF00773 RNB domain HCD_00355 PF08501 Shikimate dehydrogenase substrate binding domain HCD_00365 PF00528 Binding-protein-dependent transport system inner membrane component HCD_00370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HCD_00375 PF00579 tRNA synthetases class I (W and Y) HCD_00385 PF03840 Preprotein translocase SecG subunit HCD_00390 PF01765 Ribosome recycling factor HCD_00395 PF00156 Phosphoribosyl transferase domain HCD_00405 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HCD_00410 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HCD_00415 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HCD_00420 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HCD_00435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HCD_00435 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HCD_00435 PF01568 Molydopterin dinucleotide binding domain HCD_00435 PF00384 Molybdopterin oxidoreductase HCD_00435 PF12838 4Fe-4S dicluster domain HCD_00440 PF00146 NADH dehydrogenase HCD_00445 PF12838 4Fe-4S dicluster domain HCD_00450 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HCD_00455 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HCD_00460 PF00361 Proton-conducting membrane transporter HCD_00460 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HCD_00465 PF00361 Proton-conducting membrane transporter HCD_00470 PF00361 Proton-conducting membrane transporter HCD_00480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HCD_00480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HCD_00480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HCD_00480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HCD_00505 PF03070 TENA/THI-4/PQQC family HCD_00535 PF13411 MerR HTH family regulatory protein HCD_00535 PF00145 C-5 cytosine-specific DNA methylase HCD_00540 PF00425 chorismate binding enzyme HCD_00540 PF04715 Anthranilate synthase component I, N terminal region HCD_00545 PF00117 Glutamine amidotransferase class-I HCD_00550 PF00591 Glycosyl transferase family, a/b domain HCD_00550 PF02885 Glycosyl transferase family, helical bundle domain HCD_00555 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HCD_00555 PF00218 Indole-3-glycerol phosphate synthase HCD_00560 PF00291 Pyridoxal-phosphate dependent enzyme HCD_00565 PF00290 Tryptophan synthase alpha chain HCD_00645 PF14489 QueF-like protein HCD_00675 PF13651 Adenine-specific methyltransferase EcoRI HCD_00680 PF02963 Restriction endonuclease EcoRI HCD_00685 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HCD_00690 PF01313 Bacterial export proteins, family 3 HCD_00695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HCD_00695 PF18269 T3SS EscN ATPase C-terminal domain HCD_00700 PF00437 Type II/IV secretion system protein HCD_00705 PF00133 tRNA synthetases class I (I, L, M and V) HCD_00705 PF08264 Anticodon-binding domain of tRNA HCD_00710 PF01479 S4 domain HCD_00730 PF00398 Ribosomal RNA adenine dimethylase HCD_00735 PF17770 Ribonuclease J C-terminal domain HCD_00735 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HCD_00735 PF00753 Metallo-beta-lactamase superfamily HCD_00740 PF00571 CBS domain HCD_00740 PF01380 SIS domain HCD_00745 PF04055 Radical SAM superfamily HCD_00755 PF04055 Radical SAM superfamily HCD_00770 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HCD_00775 PF02599 Global regulator protein family HCD_00780 PF00288 GHMP kinases N terminal domain HCD_00785 PF01668 SmpB protein HCD_00790 PF01618 MotA/TolQ/ExbB proton channel family HCD_00795 PF02472 Biopolymer transport protein ExbD/TolR HCD_00800 PF00468 Ribosomal protein L34 HCD_00805 PF00825 Ribonuclease P HCD_00810 PF01809 Putative membrane protein insertion efficiency factor HCD_00815 PF02096 60Kd inner membrane protein HCD_00815 PF14849 YidC periplasmic domain HCD_00825 PF01926 50S ribosome-binding GTPase HCD_00825 PF12631 MnmE helical domain HCD_00825 PF10396 GTP-binding protein TrmE N-terminus HCD_00855 PF01343 Peptidase family S49 HCD_00860 PF00551 Formyl transferase HCD_00860 PF01842 ACT domain HCD_00875 PF02169 LPP20 lipoprotein HCD_00885 PF00085 Thioredoxin HCD_01015 PF07282 Putative transposase DNA-binding domain HCD_01015 PF01385 Probable transposase HCD_01015 PF12323 Helix-turn-helix domain HCD_01020 PF01797 Transposase IS200 like HCD_01035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_01035 PF08447 PAS fold HCD_01035 PF13426 PAS domain HCD_01045 PF17755 UvrA DNA-binding domain HCD_01045 PF00005 ABC transporter HCD_01045 PF17760 UvrA interaction domain HCD_01055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_01055 PF00672 HAMP domain HCD_01055 PF02743 Cache domain HCD_01060 PF01795 MraW methylase family HCD_01085 PF00309 Sigma-54 factor, Activator interacting domain (AID) HCD_01085 PF04963 Sigma-54 factor, core binding domain HCD_01085 PF04552 Sigma-54, DNA binding domain HCD_01090 PF00005 ABC transporter HCD_01090 PF12399 Branched-chain amino acid ATP-binding cassette transporter HCD_01100 PF12169 DNA polymerase III subunits gamma and tau domain III HCD_01100 PF12170 DNA polymerase III tau subunit V interacting with alpha HCD_01105 PF03605 Anaerobic c4-dicarboxylate membrane transporter HCD_01110 PF17763 Glutaminase/Asparaginase C-terminal domain HCD_01110 PF00710 Asparaginase, N-terminal HCD_01125 PF03601 Conserved hypothetical protein 698 HCD_01130 PF01810 LysE type translocator HCD_01140 PF01207 Dihydrouridine synthase (Dus) HCD_01145 PF12627 Probable RNA and SrmB- binding site of polymerase A HCD_01145 PF13735 tRNA nucleotidyltransferase domain 2 putative HCD_01145 PF01743 Poly A polymerase head domain HCD_01150 PF06508 Queuosine biosynthesis protein QueC HCD_01175 PF01750 Hydrogenase maturation protease HCD_01180 PF01292 Prokaryotic cytochrome b561 HCD_01185 PF00374 Nickel-dependent hydrogenase HCD_01190 PF01797 Transposase IS200 like HCD_01195 PF01385 Probable transposase HCD_01195 PF07282 Putative transposase DNA-binding domain HCD_01195 PF12323 Helix-turn-helix domain HCD_01200 PF00374 Nickel-dependent hydrogenase HCD_01205 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HCD_01205 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HCD_01205 PF10518 TAT (twin-arginine translocation) pathway signal sequence HCD_01220 PF00873 AcrB/AcrD/AcrF family HCD_01235 PF01208 Uroporphyrinogen decarboxylase (URO-D) HCD_01250 PF00700 Bacterial flagellin C-terminal helical region HCD_01250 PF00669 Bacterial flagellin N-terminal helical region HCD_01250 PF07196 Flagellin hook IN motif HCD_01255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_01255 PF00672 HAMP domain HCD_01255 PF16591 Helical bimodular sensor domain HCD_01260 PF00155 Aminotransferase class I and II HCD_01265 PF00912 Transglycosylase HCD_01265 PF00905 Penicillin binding protein transpeptidase domain HCD_01300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HCD_01305 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HCD_01305 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HCD_01305 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HCD_01325 PF04023 FeoA domain HCD_01330 PF00730 HhH-GPD superfamily base excision DNA repair protein HCD_01330 PF00633 Helix-hairpin-helix motif HCD_01335 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HCD_01335 PF04509 CheC-like family HCD_01375 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HCD_01375 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HCD_01380 PF10502 Signal peptidase, peptidase S26 HCD_01385 PF02163 Peptidase family M50 HCD_01390 PF02502 Ribose/Galactose Isomerase HCD_01400 PF00156 Phosphoribosyl transferase domain HCD_01405 PF09335 SNARE associated Golgi protein HCD_01410 PF00883 Cytosol aminopeptidase family, catalytic domain HCD_01410 PF02789 Cytosol aminopeptidase family, N-terminal domain HCD_01415 PF06071 Protein of unknown function (DUF933) HCD_01415 PF01926 50S ribosome-binding GTPase HCD_01425 PF01594 AI-2E family transporter HCD_01430 PF01678 Diaminopimelate epimerase HCD_01435 PF04224 Protein of unknown function, DUF417 HCD_01450 PF01165 Ribosomal protein S21 HCD_01460 PF00550 Phosphopantetheine attachment site HCD_01465 PF00109 Beta-ketoacyl synthase, N-terminal domain HCD_01465 PF02801 Beta-ketoacyl synthase, C-terminal domain HCD_01470 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HCD_01490 PF01648 4'-phosphopantetheinyl transferase superfamily HCD_01495 PF03748 Flagellar basal body-associated protein FliL HCD_01525 PF00986 DNA gyrase B subunit, carboxyl terminus HCD_01525 PF00204 DNA gyrase B HCD_01525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCD_01525 PF01751 Toprim domain HCD_01530 PF00712 DNA polymerase III beta subunit, N-terminal domain HCD_01530 PF02767 DNA polymerase III beta subunit, central domain HCD_01530 PF02768 DNA polymerase III beta subunit, C-terminal domain HCD_01540 PF00209 Sodium:neurotransmitter symporter family HCD_01545 PF00209 Sodium:neurotransmitter symporter family HCD_01550 PF00209 Sodium:neurotransmitter symporter family HCD_01555 PF03061 Thioesterase superfamily HCD_01560 PF04359 Protein of unknown function (DUF493) HCD_01565 PF08245 Mur ligase middle domain HCD_01565 PF02875 Mur ligase family, glutamate ligase domain HCD_01570 PF00953 Glycosyl transferase family 4 HCD_01570 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HCD_01580 PF00830 Ribosomal L28 family HCD_01590 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HCD_01595 PF00119 ATP synthase A chain HCD_01600 PF00571 CBS domain HCD_01600 PF00478 IMP dehydrogenase / GMP reductase domain HCD_01605 PF01425 Amidase HCD_01610 PF01121 Dephospho-CoA kinase HCD_01615 PF17284 Spermidine synthase tetramerisation domain HCD_01625 PF01926 50S ribosome-binding GTPase HCD_01625 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HCD_01630 PF00216 Bacterial DNA-binding protein HCD_01650 PF02719 Polysaccharide biosynthesis protein HCD_01655 PF04127 DNA / pantothenate metabolism flavoprotein HCD_01655 PF02441 Flavoprotein HCD_01680 PF06002 Alpha-2,3-sialyltransferase (CST-I) HCD_01685 PF02348 Cytidylyltransferase HCD_01690 PF02350 UDP-N-acetylglucosamine 2-epimerase HCD_01695 PF03102 NeuB family HCD_01695 PF08666 SAF domain HCD_01700 PF02581 Thiamine monophosphate synthase HCD_01705 PF08543 Phosphomethylpyrimidine kinase HCD_01710 PF02110 Hydroxyethylthiazole kinase family HCD_01720 PF00005 ABC transporter HCD_01720 PF12848 ABC transporter HCD_01725 PF01797 Transposase IS200 like HCD_01735 PF07282 Putative transposase DNA-binding domain HCD_01735 PF01385 Probable transposase HCD_01735 PF12323 Helix-turn-helix domain HCD_01760 PF13580 SIS domain HCD_01765 PF00294 pfkB family carbohydrate kinase HCD_01765 PF01467 Cytidylyltransferase-like HCD_01770 PF01370 NAD dependent epimerase/dehydratase family HCD_01785 PF03309 Type III pantothenate kinase HCD_01790 PF15437 Plasminogen-binding protein pgbA C-terminal HCD_01800 PF00692 dUTPase HCD_01805 PF03449 Transcription elongation factor, N-terminal HCD_01805 PF01272 Transcription elongation factor, GreA/GreB, C-term HCD_01810 PF02684 Lipid-A-disaccharide synthetase HCD_01820 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HCD_01825 PF00460 Flagella basal body rod protein HCD_01825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HCD_01825 PF07559 Flagellar basal body protein FlaE HCD_01825 PF07196 Flagellin hook IN motif HCD_01830 PF03831 PhnA domain HCD_01830 PF08274 PhnA Zinc-Ribbon HCD_01845 PF06628 Catalase-related immune-responsive HCD_01845 PF00199 Catalase HCD_01860 PF02075 Crossover junction endodeoxyribonuclease RuvC HCD_01865 PF02691 Vacuolating cyotoxin HCD_01865 PF03797 Autotransporter beta-domain HCD_01870 PF02691 Vacuolating cyotoxin HCD_01875 PF02691 Vacuolating cyotoxin HCD_01880 PF07499 RuvA, C-terminal domain HCD_01880 PF01330 RuvA N terminal domain HCD_01890 PF03023 Lipid II flippase MurJ HCD_01895 PF09190 DALR domain HCD_01895 PF01406 tRNA synthetases class I (C) catalytic domain HCD_01900 PF03797 Autotransporter beta-domain HCD_01900 PF02691 Vacuolating cyotoxin HCD_01910 PF02086 D12 class N6 adenine-specific DNA methyltransferase HCD_01925 PF02384 N-6 DNA Methylase HCD_01925 PF07669 Eco57I restriction-modification methylase HCD_01930 PF13361 UvrD-like helicase C-terminal domain HCD_01930 PF00580 UvrD/REP helicase N-terminal domain HCD_01950 PF00145 C-5 cytosine-specific DNA methylase HCD_01955 PF07282 Putative transposase DNA-binding domain HCD_01955 PF01385 Probable transposase HCD_01955 PF12323 Helix-turn-helix domain HCD_01960 PF01797 Transposase IS200 like HCD_01965 PF00145 C-5 cytosine-specific DNA methylase HCD_01970 PF03553 Na+/H+ antiporter family HCD_01975 PF01042 Endoribonuclease L-PSP HCD_01980 PF01266 FAD dependent oxidoreductase HCD_01985 PF01235 Sodium:alanine symporter family HCD_01990 PF00842 Alanine racemase, C-terminal domain HCD_01990 PF01168 Alanine racemase, N-terminal domain HCD_01995 PF00497 Bacterial extracellular solute-binding proteins, family 3 HCD_02000 PF00528 Binding-protein-dependent transport system inner membrane component HCD_02025 PF02590 Predicted SPOUT methyltransferase HCD_02030 PF17848 Acetyl-coA carboxylase zinc finger domain HCD_02030 PF01039 Carboxyl transferase domain HCD_02040 PF02464 Competence-damaged protein HCD_02040 PF18146 Damage-inducible protein CinA KH domain HCD_02040 PF00994 Probable molybdopterin binding domain HCD_02045 PF00005 ABC transporter HCD_02055 PF00145 C-5 cytosine-specific DNA methylase HCD_02060 PF03144 Elongation factor Tu domain 2 HCD_02060 PF00679 Elongation factor G C-terminus HCD_02060 PF06421 GTP-binding protein LepA C-terminus HCD_02060 PF00009 Elongation factor Tu GTP binding domain HCD_02065 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HCD_02065 PF02780 Transketolase, C-terminal domain HCD_02065 PF02779 Transketolase, pyrimidine binding domain HCD_02075 PF14842 FliG N-terminal domain HCD_02075 PF14841 FliG middle domain HCD_02075 PF01706 FliG C-terminal domain HCD_02080 PF08345 Flagellar M-ring protein C-terminal HCD_02080 PF01514 Secretory protein of YscJ/FliF family HCD_02085 PF01569 PAP2 superfamily HCD_02090 PF00117 Glutamine amidotransferase class-I HCD_02090 PF06418 CTP synthase N-terminus HCD_02095 PF02272 DHHA1 domain HCD_02095 PF17768 RecJ OB domain HCD_02095 PF01368 DHH family HCD_02095 PF10141 Single-strand DNA-specific exonuclease, C terminal domain HCD_02100 PF00849 RNA pseudouridylate synthase HCD_02110 PF12161 HsdM N-terminal domain HCD_02110 PF02384 N-6 DNA Methylase HCD_02115 PF03652 Holliday junction resolvase HCD_02120 PF17782 DprA winged helix domain HCD_02120 PF02481 DNA recombination-mediator protein A HCD_02125 PF03776 Septum formation topological specificity factor MinE HCD_02130 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HCD_02135 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HCD_02135 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HCD_02140 PF02540 NAD synthase HCD_02145 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HCD_02155 PF02348 Cytidylyltransferase HCD_02160 PF02348 Cytidylyltransferase HCD_02165 PF02107 Flagellar L-ring protein HCD_02185 PF00625 Guanylate kinase HCD_02190 PF02416 mttA/Hcf106 family HCD_02195 PF00750 tRNA synthetases class I (R) HCD_02195 PF05746 DALR anticodon binding domain HCD_02195 PF03485 Arginyl tRNA synthetase N terminal domain HCD_02200 PF01243 Pyridoxamine 5'-phosphate oxidase HCD_02200 PF10615 Protein of unknown function (DUF2470) HCD_02215 PF01385 Probable transposase HCD_02215 PF12323 Helix-turn-helix domain HCD_02215 PF07282 Putative transposase DNA-binding domain HCD_02220 PF01797 Transposase IS200 like HCD_02225 PF13614 AAA domain HCD_02285 PF00004 ATPase family associated with various cellular activities (AAA) HCD_02285 PF17862 AAA+ lid domain HCD_02285 PF01434 Peptidase family M41 HCD_02290 PF00919 Uncharacterized protein family UPF0004 HCD_02290 PF04055 Radical SAM superfamily HCD_02300 PF01761 3-dehydroquinate synthase HCD_02310 PF01702 Queuine tRNA-ribosyltransferase HCD_02320 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HCD_02325 PF02541 Ppx/GppA phosphatase family HCD_02330 PF12838 4Fe-4S dicluster domain HCD_02335 PF00218 Indole-3-glycerol phosphate synthase HCD_02345 PF03692 Putative zinc- or iron-chelating domain HCD_02370 PF00919 Uncharacterized protein family UPF0004 HCD_02370 PF04055 Radical SAM superfamily HCD_02380 PF01979 Amidohydrolase family HCD_02385 PF01979 Amidohydrolase family HCD_02390 PF02683 Cytochrome C biogenesis protein transmembrane region HCD_02395 PF02861 Clp amino terminal domain, pathogenicity island component HCD_02395 PF17871 AAA lid domain HCD_02395 PF07724 AAA domain (Cdc48 subfamily) HCD_02395 PF10431 C-terminal, D2-small domain, of ClpB protein HCD_02395 PF00004 ATPase family associated with various cellular activities (AAA) HCD_02400 PF01555 DNA methylase HCD_02405 PF18643 BsaWI restriction endonuclease type 2 HCD_02410 PF01385 Probable transposase HCD_02410 PF07282 Putative transposase DNA-binding domain HCD_02410 PF12323 Helix-turn-helix domain HCD_02415 PF01797 Transposase IS200 like HCD_02430 PF07804 HipA-like C-terminal domain HCD_02435 PF02899 Phage integrase, N-terminal SAM-like domain HCD_02435 PF00589 Phage integrase family HCD_02470 PF10609 NUBPL iron-transfer P-loop NTPase HCD_02470 PF01883 Iron-sulfur cluster assembly protein HCD_02475 PF01797 Transposase IS200 like HCD_02485 PF12323 Helix-turn-helix domain HCD_02485 PF07282 Putative transposase DNA-binding domain HCD_02485 PF01385 Probable transposase HCD_02505 PF13649 Methyltransferase domain HCD_02510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HCD_02510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HCD_02515 PF08534 Redoxin HCD_02525 PF16363 GDP-mannose 4,6 dehydratase HCD_02530 PF01416 tRNA pseudouridine synthase HCD_02545 PF00268 Ribonucleotide reductase, small chain HCD_02555 PF02601 Exonuclease VII, large subunit HCD_02555 PF13742 OB-fold nucleic acid binding domain HCD_02560 PF02163 Peptidase family M50 HCD_02575 PF00709 Adenylosuccinate synthetase HCD_02590 PF12911 N-terminal TM domain of oligopeptide transport permease C HCD_02590 PF00528 Binding-protein-dependent transport system inner membrane component HCD_02595 PF00005 ABC transporter HCD_02595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HCD_02605 PF00117 Glutamine amidotransferase class-I HCD_02605 PF00958 GMP synthase C terminal domain HCD_02605 PF02540 NAD synthase HCD_02620 PF01568 Molydopterin dinucleotide binding domain HCD_02620 PF18364 Molybdopterin oxidoreductase N-terminal domain HCD_02620 PF00384 Molybdopterin oxidoreductase HCD_02635 PF01230 HIT domain HCD_02640 PF01409 tRNA synthetases class II core domain (F) HCD_02640 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HCD_02645 PF01588 Putative tRNA binding domain HCD_02645 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HCD_02645 PF03484 tRNA synthetase B5 domain HCD_02645 PF03147 Ferredoxin-fold anticodon binding domain HCD_02650 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HCD_02655 PF02401 LytB protein HCD_02660 PF00575 S1 RNA binding domain HCD_02670 PF01842 ACT domain HCD_02670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HCD_02670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HCD_02675 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HCD_02680 PF01168 Alanine racemase, N-terminal domain HCD_02690 PF01584 CheW-like domain HCD_02690 PF00072 Response regulator receiver domain HCD_02695 PF07194 P2 response regulator binding domain HCD_02695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCD_02695 PF01627 Hpt domain HCD_02695 PF01584 CheW-like domain HCD_02695 PF02895 Signal transducing histidine kinase, homodimeric domain HCD_02705 PF00699 Urease beta subunit HCD_02705 PF00547 Urease, gamma subunit HCD_02710 PF01979 Amidohydrolase family HCD_02710 PF00449 Urease alpha-subunit, N-terminal domain HCD_02730 PF00106 short chain dehydrogenase HCD_02750 PF01048 Phosphorylase superfamily HCD_02755 PF01676 Metalloenzyme superfamily HCD_02760 PF01773 Na+ dependent nucleoside transporter N-terminus HCD_02760 PF07662 Na+ dependent nucleoside transporter C-terminus HCD_02765 PF07690 Major Facilitator Superfamily HCD_02770 PF01171 PP-loop family HCD_02775 PF02254 TrkA-N domain HCD_02775 PF02080 TrkA-C domain HCD_02775 PF00999 Sodium/hydrogen exchanger family HCD_02785 PF00194 Eukaryotic-type carbonic anhydrase HCD_02790 PF00581 Rhodanese-like domain HCD_02795 PF01118 Semialdehyde dehydrogenase, NAD binding domain HCD_02795 PF02774 Semialdehyde dehydrogenase, dimerisation domain HCD_02800 PF13393 Histidyl-tRNA synthetase HCD_02800 PF03129 Anticodon binding domain HCD_02805 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HCD_02810 PF01613 Flavin reductase like domain HCD_02820 PF12323 Helix-turn-helix domain HCD_02820 PF07282 Putative transposase DNA-binding domain HCD_02820 PF01385 Probable transposase HCD_02825 PF01797 Transposase IS200 like HCD_02830 PF02151 UvrB/uvrC motif HCD_02830 PF17757 UvrB interaction domain HCD_02830 PF12344 Ultra-violet resistance protein B HCD_02830 PF00271 Helicase conserved C-terminal domain HCD_02830 PF04851 Type III restriction enzyme, res subunit HCD_02855 PF00009 Elongation factor Tu GTP binding domain HCD_02855 PF00679 Elongation factor G C-terminus HCD_02855 PF14492 Elongation Factor G, domain II HCD_02855 PF03764 Elongation factor G, domain IV HCD_02855 PF03144 Elongation factor Tu domain 2 HCD_02860 PF00177 Ribosomal protein S7p/S5e HCD_02865 PF00164 Ribosomal protein S12/S23 HCD_02870 PF00562 RNA polymerase Rpb2, domain 6 HCD_02870 PF04983 RNA polymerase Rpb1, domain 3 HCD_02870 PF05000 RNA polymerase Rpb1, domain 4 HCD_02870 PF04560 RNA polymerase Rpb2, domain 7 HCD_02870 PF04998 RNA polymerase Rpb1, domain 5 HCD_02870 PF04563 RNA polymerase beta subunit HCD_02870 PF04561 RNA polymerase Rpb2, domain 2 HCD_02870 PF04565 RNA polymerase Rpb2, domain 3 HCD_02870 PF10385 RNA polymerase beta subunit external 1 domain HCD_02870 PF04997 RNA polymerase Rpb1, domain 1 HCD_02870 PF00623 RNA polymerase Rpb1, domain 2 HCD_02875 PF00542 Ribosomal protein L7/L12 C-terminal domain HCD_02875 PF16320 Ribosomal protein L7/L12 dimerisation domain HCD_02880 PF00466 Ribosomal protein L10 HCD_02885 PF00687 Ribosomal protein L1p/L10e family HCD_02890 PF03946 Ribosomal protein L11, N-terminal domain HCD_02890 PF00298 Ribosomal protein L11, RNA binding domain HCD_02895 PF02357 Transcription termination factor nusG HCD_02905 PF00471 Ribosomal protein L33 HCD_02910 PF03144 Elongation factor Tu domain 2 HCD_02910 PF03143 Elongation factor Tu C-terminal domain HCD_02910 PF00009 Elongation factor Tu GTP binding domain HCD_02915 PF00664 ABC transporter transmembrane region HCD_02915 PF00005 ABC transporter HCD_02940 PF00137 ATP synthase subunit C HCD_02945 PF00013 KH domain HCD_02945 PF01138 3' exoribonuclease family, domain 1 HCD_02945 PF03725 3' exoribonuclease family, domain 2 HCD_02945 PF00575 S1 RNA binding domain HCD_02955 PF04453 LPS transport system D HCD_02955 PF03968 OstA-like protein HCD_02965 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HCD_02965 PF02843 Phosphoribosylglycinamide synthetase, C domain HCD_02965 PF02844 Phosphoribosylglycinamide synthetase, N domain HCD_02975 PF12323 Helix-turn-helix domain HCD_02975 PF01385 Probable transposase HCD_02975 PF07282 Putative transposase DNA-binding domain HCD_02980 PF01797 Transposase IS200 like HCD_03015 PF00464 Serine hydroxymethyltransferase HCD_03020 PF01336 OB-fold nucleic acid binding domain HCD_03020 PF00152 tRNA synthetases class II (D, K and N) HCD_03030 PF00795 Carbon-nitrogen hydrolase HCD_03035 PF00005 ABC transporter HCD_03040 PF08666 SAF domain HCD_03040 PF03102 NeuB family HCD_03045 PF08207 Elongation factor P (EF-P) KOW-like domain HCD_03045 PF01132 Elongation factor P (EF-P) OB domain HCD_03045 PF09285 Elongation factor P, C-terminal HCD_03050 PF01116 Fructose-bisphosphate aldolase class-II HCD_03055 PF00639 PPIC-type PPIASE domain HCD_03070 PF00994 Probable molybdopterin binding domain HCD_03070 PF03454 MoeA C-terminal region (domain IV) HCD_03070 PF03453 MoeA N-terminal region (domain I and II) HCD_03075 PF00472 RF-1 domain HCD_03075 PF03462 PCRF domain HCD_03100 PF00486 Transcriptional regulatory protein, C terminal HCD_03100 PF00072 Response regulator receiver domain HCD_03105 PF00672 HAMP domain HCD_03105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCD_03105 PF16750 Sensor domain of 2-component histidine kinase HCD_03105 PF00512 His Kinase A (phospho-acceptor) domain HCD_03110 PF00490 Delta-aminolevulinic acid dehydratase HCD_03115 PF01709 Transcriptional regulator HCD_03120 PF08238 Sel1 repeat HCD_03145 PF01202 Shikimate kinase HCD_03160 PF03952 Enolase, N-terminal domain HCD_03160 PF00113 Enolase, C-terminal TIM barrel domain HCD_03165 PF00154 recA bacterial DNA recombination protein HCD_03200 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HCD_03200 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HCD_03215 PF00115 Cytochrome C and Quinol oxidase polypeptide I HCD_03220 PF00939 Sodium:sulfate symporter transmembrane region HCD_03225 PF00633 Helix-hairpin-helix motif HCD_03225 PF00730 HhH-GPD superfamily base excision DNA repair protein HCD_03225 PF14815 NUDIX domain HCD_03235 PF02652 L-lactate permease HCD_03240 PF02652 L-lactate permease HCD_03245 PF02754 Cysteine-rich domain HCD_03250 PF02589 LUD domain HCD_03250 PF13183 4Fe-4S dicluster domain HCD_03250 PF11870 Domain of unknown function (DUF3390) HCD_03260 PF00578 AhpC/TSA family HCD_03295 PF02545 Maf-like protein HCD_03300 PF02272 DHHA1 domain HCD_03300 PF01411 tRNA synthetases class II (A) HCD_03300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HCD_03330 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HCD_03330 PF00117 Glutamine amidotransferase class-I HCD_03345 PF00892 EamA-like transporter family HCD_03370 PF00453 Ribosomal protein L20 HCD_03375 PF01632 Ribosomal protein L35 HCD_03380 PF05198 Translation initiation factor IF-3, N-terminal domain HCD_03380 PF00707 Translation initiation factor IF-3, C-terminal domain HCD_03385 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HCD_03385 PF03129 Anticodon binding domain HCD_03385 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HCD_03390 PF00391 PEP-utilising enzyme, mobile domain HCD_03390 PF02896 PEP-utilising enzyme, TIM barrel domain HCD_03390 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HCD_03410 PF00535 Glycosyl transferase family 2 HCD_03415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_03415 PF17200 Single Cache domain 2 HCD_03415 PF00672 HAMP domain HCD_03420 PF00012 Hsp70 protein HCD_03425 PF01025 GrpE HCD_03450 PF00669 Bacterial flagellin N-terminal helical region HCD_03450 PF07196 Flagellin hook IN motif HCD_03450 PF00700 Bacterial flagellin C-terminal helical region HCD_03455 PF01751 Toprim domain HCD_03455 PF01396 Topoisomerase DNA binding C4 zinc finger HCD_03455 PF01131 DNA topoisomerase HCD_03460 PF04055 Radical SAM superfamily HCD_03475 PF02677 Epoxyqueuosine reductase QueH HCD_03480 PF13426 PAS domain HCD_03480 PF08447 PAS fold HCD_03480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_03485 PF00291 Pyridoxal-phosphate dependent enzyme HCD_03495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HCD_03495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HCD_03505 PF00698 Acyl transferase domain HCD_03510 PF01048 Phosphorylase superfamily HCD_03515 PF00140 Sigma-70 factor, region 1.2 HCD_03515 PF04542 Sigma-70 region 2 HCD_03515 PF04539 Sigma-70 region 3 HCD_03515 PF04545 Sigma-70, region 4 HCD_03525 PF06039 Malate:quinone oxidoreductase (Mqo) HCD_03530 PF17402 Family of unknown function (DUF5408) HCD_03535 PF00572 Ribosomal protein L13 HCD_03540 PF00380 Ribosomal protein S9/S16 HCD_03545 PF00672 HAMP domain HCD_03545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_03545 PF17200 Single Cache domain 2 HCD_03560 PF03462 PCRF domain HCD_03560 PF00472 RF-1 domain HCD_03565 PF01649 Ribosomal protein S20 HCD_03570 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HCD_03570 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HCD_03570 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HCD_03570 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HCD_03575 PF01252 Signal peptidase (SPase) II HCD_03580 PF00547 Urease, gamma subunit HCD_03580 PF00699 Urease beta subunit HCD_03585 PF00449 Urease alpha-subunit, N-terminal domain HCD_03585 PF01979 Amidohydrolase family HCD_03590 PF02293 AmiS/UreI family transporter HCD_03595 PF05194 UreE urease accessory protein, C-terminal domain HCD_03595 PF02814 UreE urease accessory protein, N-terminal domain HCD_03600 PF01730 UreF HCD_03605 PF02492 CobW/HypB/UreG, nucleotide-binding domain HCD_03610 PF01774 UreD urease accessory protein HCD_03630 PF14850 DNA-binding domain of Proline dehydrogenase HCD_03630 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HCD_03630 PF01619 Proline dehydrogenase HCD_03630 PF00171 Aldehyde dehydrogenase family HCD_03635 PF00474 Sodium:solute symporter family HCD_03640 PF00145 C-5 cytosine-specific DNA methylase HCD_03655 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HCD_03660 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HCD_03665 PF00953 Glycosyl transferase family 4 HCD_03670 PF01569 PAP2 superfamily HCD_03690 PF00528 Binding-protein-dependent transport system inner membrane component HCD_03695 PF09383 NIL domain HCD_03695 PF00005 ABC transporter HCD_03705 PF00677 Lumazine binding domain HCD_03710 PF01026 TatD related DNase HCD_03720 PF05036 Sporulation related domain HCD_03720 PF03330 Lytic transglycolase HCD_03740 PF01926 50S ribosome-binding GTPase HCD_03750 PF00905 Penicillin binding protein transpeptidase domain HCD_03750 PF03717 Penicillin-binding Protein dimerisation domain HCD_03755 PF03180 NLPA lipoprotein HCD_03760 PF10417 C-terminal domain of 1-Cys peroxiredoxin HCD_03760 PF00578 AhpC/TSA family HCD_03770 PF01098 Cell cycle protein HCD_03775 PF00460 Flagella basal body rod protein HCD_03780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HCD_03780 PF00460 Flagella basal body rod protein HCD_03785 PF02049 Flagellar hook-basal body complex protein FliE HCD_03790 PF03717 Penicillin-binding Protein dimerisation domain HCD_03790 PF00905 Penicillin binding protein transpeptidase domain HCD_03800 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system HCD_03810 PF00975 Thioesterase domain HCD_03820 PF00033 Cytochrome b/b6/petB HCD_03820 PF00032 Cytochrome b(C-terminal)/b6/petD HCD_03825 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HCD_03825 PF00355 Rieske [2Fe-2S] domain HCD_03830 PF17757 UvrB interaction domain HCD_03830 PF03461 TRCF domain HCD_03830 PF00271 Helicase conserved C-terminal domain HCD_03830 PF00270 DEAD/DEAH box helicase HCD_03830 PF02559 CarD-like/TRCF domain HCD_03840 PF01551 Peptidase family M23 HCD_03840 PF04225 Opacity-associated protein A LysM-like domain HCD_03850 PF08245 Mur ligase middle domain HCD_03860 PF09334 tRNA synthetases class I (M) HCD_03860 PF13603 Leucyl-tRNA synthetase, Domain 2 HCD_03860 PF00133 tRNA synthetases class I (I, L, M and V) HCD_03870 PF02355 Protein export membrane protein HCD_03870 PF07549 SecD/SecF GG Motif HCD_03875 PF02355 Protein export membrane protein HCD_03880 PF02699 Preprotein translocase subunit HCD_03885 PF06965 Na+/H+ antiporter 1 HCD_03890 PF13361 UvrD-like helicase C-terminal domain HCD_03890 PF00580 UvrD/REP helicase N-terminal domain HCD_03890 PF12705 PD-(D/E)XK nuclease superfamily HCD_03895 PF00318 Ribosomal protein S2 HCD_03900 PF00889 Elongation factor TS HCD_03920 PF02086 D12 class N6 adenine-specific DNA methyltransferase HCD_03930 PF08242 Methyltransferase domain HCD_03935 PF02086 D12 class N6 adenine-specific DNA methyltransferase HCD_03940 PF01196 Ribosomal protein L17 HCD_03945 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HCD_03945 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HCD_03945 PF01000 RNA polymerase Rpb3/RpoA insert domain HCD_03950 PF00163 Ribosomal protein S4/S9 N-terminal domain HCD_03950 PF01479 S4 domain HCD_03955 PF00411 Ribosomal protein S11 HCD_03960 PF00416 Ribosomal protein S13/S18 HCD_03965 PF00444 Ribosomal protein L36 HCD_03970 PF01176 Translation initiation factor 1A / IF-1 HCD_03975 PF00557 Metallopeptidase family M24 HCD_03980 PF00344 SecY translocase HCD_03985 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HCD_03990 PF00333 Ribosomal protein S5, N-terminal domain HCD_03990 PF03719 Ribosomal protein S5, C-terminal domain HCD_03995 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HCD_04000 PF00347 Ribosomal protein L6 HCD_04005 PF00410 Ribosomal protein S8 HCD_04010 PF00253 Ribosomal protein S14p/S29e HCD_04015 PF00673 ribosomal L5P family C-terminus HCD_04015 PF00281 Ribosomal protein L5 HCD_04020 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HCD_04020 PF00467 KOW motif HCD_04025 PF00238 Ribosomal protein L14p/L23e HCD_04030 PF00366 Ribosomal protein S17 HCD_04035 PF00831 Ribosomal L29 protein HCD_04040 PF00252 Ribosomal protein L16p/L10e HCD_04045 PF07650 KH domain HCD_04045 PF00189 Ribosomal protein S3, C-terminal domain HCD_04050 PF00237 Ribosomal protein L22p/L17e HCD_04055 PF00203 Ribosomal protein S19 HCD_04060 PF03947 Ribosomal Proteins L2, C-terminal domain HCD_04060 PF00181 Ribosomal Proteins L2, RNA binding domain HCD_04065 PF00276 Ribosomal protein L23 HCD_04070 PF00573 Ribosomal protein L4/L1 family HCD_04075 PF00297 Ribosomal protein L3 HCD_04080 PF00338 Ribosomal protein S10p/S20e HCD_04095 PF01351 Ribonuclease HII HCD_04100 PF00206 Lyase HCD_04100 PF10415 Fumarase C C-terminus HCD_04120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HCD_04120 PF00529 HlyD membrane-fusion protein of T1SS HCD_04125 PF00873 AcrB/AcrD/AcrF family HCD_04145 PF01420 Type I restriction modification DNA specificity domain HCD_04150 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HCD_04150 PF18766 SWI2/SNF2 ATPase HCD_04150 PF11867 Domain of unknown function (DUF3387) HCD_04160 PF00486 Transcriptional regulatory protein, C terminal HCD_04160 PF00072 Response regulator receiver domain HCD_04170 PF01256 Carbohydrate kinase HCD_04170 PF03853 YjeF-related protein N-terminus HCD_04180 PF00772 DnaB-like helicase N terminal domain HCD_04180 PF03796 DnaB-like helicase C terminal domain HCD_04195 PF01040 UbiA prenyltransferase family HCD_04210 PF02666 Phosphatidylserine decarboxylase HCD_04215 PF02445 Quinolinate synthetase A protein HCD_04220 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HCD_04220 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HCD_04230 PF01555 DNA methylase HCD_04230 PF18755 Restriction Enzyme Adenine Methylase Associated HCD_04245 PF13180 PDZ domain HCD_04245 PF03572 Peptidase family S41 HCD_04255 PF01553 Acyltransferase HCD_04260 PF03167 Uracil DNA glycosylase superfamily HCD_04265 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HCD_04265 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HCD_04270 PF00162 Phosphoglycerate kinase HCD_04275 PF01544 CorA-like Mg2+ transporter protein HCD_04280 PF03741 Integral membrane protein TerC family HCD_04310 PF02223 Thymidylate kinase HCD_04315 PF01467 Cytidylyltransferase-like HCD_04320 PF02441 Flavoprotein HCD_04330 PF13361 UvrD-like helicase C-terminal domain HCD_04330 PF00580 UvrD/REP helicase N-terminal domain HCD_04340 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HCD_04340 PF02403 Seryl-tRNA synthetase N-terminal domain HCD_04350 PF02609 Exonuclease VII small subunit HCD_04355 PF01209 ubiE/COQ5 methyltransferase family HCD_04365 PF01205 Uncharacterized protein family UPF0029 HCD_04365 PF09186 Domain of unknown function (DUF1949) HCD_04380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HCD_04390 PF00571 CBS domain HCD_04390 PF03471 Transporter associated domain HCD_04390 PF01595 Cyclin M transmembrane N-terminal domain HCD_04395 PF01384 Phosphate transporter family HCD_04400 PF01106 NifU-like domain HCD_04410 PF08245 Mur ligase middle domain HCD_04410 PF02875 Mur ligase family, glutamate ligase domain HCD_04415 PF00923 Transaldolase/Fructose-6-phosphate aldolase HCD_04420 PF14693 Ribosomal protein TL5, C-terminal domain HCD_04420 PF01386 Ribosomal L25p family HCD_04425 PF01195 Peptidyl-tRNA hydrolase HCD_04450 PF00145 C-5 cytosine-specific DNA methylase HCD_04475 PF00403 Heavy-metal-associated domain HCD_04485 PF01872 RibD C-terminal domain HCD_04485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HCD_04490 PF03616 Sodium/glutamate symporter HCD_04495 PF16653 Saccharopine dehydrogenase C-terminal domain HCD_04495 PF03435 Saccharopine dehydrogenase NADP binding domain HCD_04500 PF12801 4Fe-4S binding domain HCD_04500 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HCD_04500 PF13746 4Fe-4S dicluster domain HCD_04505 PF02660 Glycerol-3-phosphate acyltransferase HCD_04530 PF03841 L-seryl-tRNA selenium transferase HCD_04535 PF13184 NusA-like KH domain HCD_04535 PF08529 NusA N-terminal domain HCD_04540 PF01555 DNA methylase HCD_04565 PF04851 Type III restriction enzyme, res subunit HCD_04565 PF08774 VRR-NUC domain HCD_04570 PF01555 DNA methylase HCD_04570 PF18273 Type III R-M EcoP15I C-terminal domain HCD_04575 PF04851 Type III restriction enzyme, res subunit HCD_04575 PF00271 Helicase conserved C-terminal domain HCD_04590 PF03372 Endonuclease/Exonuclease/phosphatase family HCD_04605 PF00308 Bacterial dnaA protein HCD_04605 PF08299 Bacterial dnaA protein helix-turn-helix HCD_04620 PF10398 Protein of unknown function (DUF2443) HCD_04625 PF01380 SIS domain HCD_04635 PF00580 UvrD/REP helicase N-terminal domain HCD_04635 PF13361 UvrD-like helicase C-terminal domain HCD_04640 PF02511 Thymidylate synthase complementing protein HCD_04655 PF01555 DNA methylase HCD_04665 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HCD_04665 PF01367 5'-3' exonuclease, C-terminal SAM fold HCD_04665 PF00476 DNA polymerase family A HCD_04675 PF01063 Amino-transferase class IV HCD_04700 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HCD_04705 PF00834 Ribulose-phosphate 3 epimerase family HCD_04710 PF11490 DNA polymerase III polC-type N-terminus II HCD_04710 PF02811 PHP domain HCD_04710 PF14579 Helix-hairpin-helix motif HCD_04710 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HCD_04710 PF00929 Exonuclease HCD_04710 PF07733 Bacterial DNA polymerase III alpha NTPase domain HCD_04710 PF14480 DNA polymerase III polC-type N-terminus I HCD_04725 PF02463 RecF/RecN/SMC N terminal domain HCD_04730 PF01513 ATP-NAD kinase HCD_04745 PF02743 Cache domain HCD_04745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_04745 PF00672 HAMP domain HCD_04750 PF08240 Alcohol dehydrogenase GroES-like domain HCD_04750 PF00107 Zinc-binding dehydrogenase HCD_04755 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HCD_04755 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HCD_04760 PF00324 Amino acid permease HCD_04765 PF00491 Arginase family HCD_04775 PF03949 Malic enzyme, NAD binding domain HCD_04775 PF01515 Phosphate acetyl/butaryl transferase HCD_04775 PF00390 Malic enzyme, N-terminal domain HCD_04790 PF12161 HsdM N-terminal domain HCD_04790 PF02384 N-6 DNA Methylase HCD_04795 PF01842 ACT domain HCD_04795 PF02153 Prephenate dehydrogenase HCD_04800 PF00004 ATPase family associated with various cellular activities (AAA) HCD_04800 PF05362 Lon protease (S16) C-terminal proteolytic domain HCD_04800 PF02190 ATP-dependent protease La (LON) substrate-binding domain HCD_04805 PF13525 Outer membrane lipoprotein HCD_04810 PF02623 FliW protein HCD_04815 PF07977 FabA-like domain HCD_04820 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HCD_04820 PF00132 Bacterial transferase hexapeptide (six repeats) HCD_04825 PF07724 AAA domain (Cdc48 subfamily) HCD_04825 PF10431 C-terminal, D2-small domain, of ClpB protein HCD_04850 PF05437 Branched-chain amino acid transport protein (AzlD) HCD_04855 PF03591 AzlC protein HCD_04860 PF00684 DnaJ central domain HCD_04860 PF00226 DnaJ domain HCD_04860 PF01556 DnaJ C terminal domain HCD_04880 PF01467 Cytidylyltransferase-like HCD_04885 PF08753 NikR C terminal nickel binding domain HCD_04885 PF01402 Ribbon-helix-helix protein, copG family HCD_04890 PF01618 MotA/TolQ/ExbB proton channel family HCD_04895 PF02472 Biopolymer transport protein ExbD/TolR HCD_04900 PF03544 Gram-negative bacterial TonB protein C-terminal HCD_04920 PF04055 Radical SAM superfamily HCD_04920 PF06968 Biotin and Thiamin Synthesis associated domain HCD_04925 PF03631 Virulence factor BrkB HCD_04935 PF02405 Permease MlaE HCD_04940 PF09383 NIL domain HCD_04940 PF00005 ABC transporter HCD_04960 PF04393 Protein of unknown function (DUF535) HCD_04965 PF00034 Cytochrome c HCD_04965 PF03150 Di-haem cytochrome c peroxidase HCD_04970 PF02811 PHP domain HCD_04970 PF14579 Helix-hairpin-helix motif HCD_04970 PF07733 Bacterial DNA polymerase III alpha NTPase domain HCD_04970 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HCD_04975 PF01479 S4 domain HCD_04975 PF00849 RNA pseudouridylate synthase HCD_05050 PF05973 Phage derived protein Gp49-like (DUF891) HCD_05070 PF00771 FHIPEP family HCD_05080 PF00072 Response regulator receiver domain HCD_05080 PF00486 Transcriptional regulatory protein, C terminal HCD_05085 PF00149 Calcineurin-like phosphoesterase HCD_05105 PF01797 Transposase IS200 like HCD_05110 PF12323 Helix-turn-helix domain HCD_05110 PF07282 Putative transposase DNA-binding domain HCD_05110 PF01385 Probable transposase HCD_05115 PF02661 Fic/DOC family HCD_05125 PF02954 Bacterial regulatory protein, Fis family HCD_05125 PF00072 Response regulator receiver domain HCD_05125 PF00158 Sigma-54 interaction domain HCD_05135 PF03989 DNA gyrase C-terminal domain, beta-propeller HCD_05135 PF00521 DNA gyrase/topoisomerase IV, subunit A HCD_05140 PF01219 Prokaryotic diacylglycerol kinase HCD_05155 PF07282 Putative transposase DNA-binding domain HCD_05155 PF01385 Probable transposase HCD_05155 PF12323 Helix-turn-helix domain HCD_05160 PF01797 Transposase IS200 like HCD_05165 PF09564 NgoBV restriction endonuclease HCD_05170 PF00145 C-5 cytosine-specific DNA methylase HCD_05180 PF07670 Nucleoside recognition HCD_05180 PF02421 Ferrous iron transport protein B HCD_05180 PF07664 Ferrous iron transport protein B C terminus HCD_05185 PF01385 Probable transposase HCD_05185 PF07282 Putative transposase DNA-binding domain HCD_05185 PF12323 Helix-turn-helix domain HCD_05190 PF01797 Transposase IS200 like HCD_05205 PF00813 FliP family HCD_05210 PF00132 Bacterial transferase hexapeptide (six repeats) HCD_05210 PF12804 MobA-like NTP transferase domain HCD_05215 PF02867 Ribonucleotide reductase, barrel domain HCD_05215 PF00317 Ribonucleotide reductase, all-alpha domain HCD_05215 PF03477 ATP cone domain HCD_05220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HCD_05220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HCD_05225 PF01925 Sulfite exporter TauE/SafE HCD_05230 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HCD_05230 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HCD_05235 PF02384 N-6 DNA Methylase HCD_05240 PF18644 Phage integrase SAM-like domain HCD_05240 PF00589 Phage integrase family HCD_05245 PF00155 Aminotransferase class I and II HCD_05255 PF02754 Cysteine-rich domain HCD_05260 PF04055 Radical SAM superfamily HCD_05260 PF06969 HemN C-terminal domain HCD_05265 PF10788 Protein of unknown function (DUF2603) HCD_05270 PF01264 Chorismate synthase HCD_05275 PF00035 Double-stranded RNA binding motif HCD_05275 PF14622 Ribonuclease-III-like HCD_05280 PF00075 RNase H HCD_05290 PF00639 PPIC-type PPIASE domain HCD_05290 PF09312 SurA N-terminal domain HCD_05295 PF02934 GatB/GatE catalytic domain HCD_05295 PF02637 GatB domain HCD_05305 PF04055 Radical SAM superfamily HCD_05310 PF07244 Surface antigen variable number repeat HCD_05310 PF01103 Surface antigen HCD_05315 PF04055 Radical SAM superfamily HCD_05330 PF00719 Inorganic pyrophosphatase HCD_05360 PF01336 OB-fold nucleic acid binding domain HCD_05360 PF00152 tRNA synthetases class II (D, K and N) HCD_05360 PF02938 GAD domain HCD_05370 PF00533 BRCA1 C Terminus (BRCT) domain HCD_05370 PF01653 NAD-dependent DNA ligase adenylation domain HCD_05370 PF03120 NAD-dependent DNA ligase OB-fold domain HCD_05390 PF00384 Molybdopterin oxidoreductase HCD_05390 PF01568 Molydopterin dinucleotide binding domain HCD_05390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HCD_05395 PF00384 Molybdopterin oxidoreductase HCD_05395 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HCD_05395 PF01568 Molydopterin dinucleotide binding domain HCD_05400 PF13247 4Fe-4S dicluster domain HCD_05420 PF00588 SpoU rRNA Methylase family HCD_05420 PF08032 RNA 2'-O ribose methyltransferase substrate binding HCD_05425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HCD_05430 PF01197 Ribosomal protein L31 HCD_05435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HCD_05435 PF07498 Rho termination factor, N-terminal domain HCD_05435 PF07497 Rho termination factor, RNA-binding domain HCD_05440 PF01177 Asp/Glu/Hydantoin racemase HCD_05450 PF07650 KH domain HCD_05450 PF01926 50S ribosome-binding GTPase HCD_05455 PF10431 C-terminal, D2-small domain, of ClpB protein HCD_05455 PF07724 AAA domain (Cdc48 subfamily) HCD_05460 PF00227 Proteasome subunit HCD_05465 PF03948 Ribosomal protein L9, C-terminal domain HCD_05465 PF01281 Ribosomal protein L9, N-terminal domain HCD_05470 PF00672 HAMP domain HCD_05470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_05470 PF17200 Single Cache domain 2 HCD_05475 PF03951 Glutamine synthetase, beta-Grasp domain HCD_05475 PF00120 Glutamine synthetase, catalytic domain HCD_05495 PF05173 Dihydrodipicolinate reductase, C-terminus HCD_05495 PF01113 Dihydrodipicolinate reductase, N-terminus HCD_05510 PF00145 C-5 cytosine-specific DNA methylase HCD_05515 PF01565 FAD binding domain HCD_05515 PF02913 FAD linked oxidases, C-terminal domain HCD_05520 PF15437 Plasminogen-binding protein pgbA C-terminal HCD_05520 PF15436 Plasminogen-binding protein pgbA N-terminal HCD_05525 PF00293 NUDIX domain HCD_05530 PF01551 Peptidase family M23 HCD_05530 PF01464 Transglycosylase SLT domain HCD_05530 PF10145 Phage-related minor tail protein HCD_05535 PF00586 AIR synthase related protein, N-terminal domain HCD_05535 PF02769 AIR synthase related protein, C-terminal domain HCD_05555 PF03548 Outer membrane lipoprotein carrier protein LolA HCD_05560 PF07516 SecA Wing and Scaffold domain HCD_05560 PF01043 SecA preprotein cross-linking domain HCD_05560 PF07517 SecA DEAD-like domain HCD_05560 PF02810 SEC-C motif HCD_05565 PF12704 MacB-like periplasmic core domain HCD_05565 PF02687 FtsX-like permease family HCD_05590 PF00403 Heavy-metal-associated domain HCD_05595 PF13335 Magnesium chelatase, subunit ChlI C-terminal HCD_05595 PF01078 Magnesium chelatase, subunit ChlI HCD_05600 PF01327 Polypeptide deformylase HCD_05605 PF00574 Clp protease HCD_05610 PF05697 Bacterial trigger factor protein (TF) HCD_05610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HCD_05610 PF05698 Bacterial trigger factor protein (TF) C-terminus HCD_05620 PF13237 4Fe-4S dicluster domain HCD_05620 PF12801 4Fe-4S binding domain HCD_05625 PF12800 4Fe-4S binding domain HCD_05625 PF12838 4Fe-4S dicluster domain HCD_05630 PF00384 Molybdopterin oxidoreductase HCD_05630 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HCD_05630 PF01568 Molydopterin dinucleotide binding domain HCD_05635 PF05211 Neuraminyllactose-binding hemagglutinin precursor (NLBH) HCD_05640 PF01967 MoaC family HCD_05645 PF00994 Probable molybdopterin binding domain HCD_05650 PF02391 MoaE protein HCD_05660 PF00994 Probable molybdopterin binding domain HCD_05660 PF03454 MoeA C-terminal region (domain IV) HCD_05660 PF03453 MoeA N-terminal region (domain I and II) HCD_05665 PF00925 GTP cyclohydrolase II HCD_05675 PF00925 GTP cyclohydrolase II HCD_05675 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HCD_05685 PF00528 Binding-protein-dependent transport system inner membrane component HCD_05690 PF00005 ABC transporter HCD_05690 PF08402 TOBE domain HCD_05710 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HCD_05710 PF14602 Hexapeptide repeat of succinyl-transferase HCD_05715 PF04551 GcpE protein HCD_05720 PF00155 Aminotransferase class I and II HCD_05725 PF01225 Mur ligase family, catalytic domain HCD_05725 PF02875 Mur ligase family, glutamate ligase domain HCD_05725 PF08245 Mur ligase middle domain HCD_05735 PF01713 Smr domain HCD_05735 PF00488 MutS domain V HCD_05745 PF07992 Pyridine nucleotide-disulphide oxidoreductase HCD_05750 PF00085 Thioredoxin HCD_05755 PF02021 Uncharacterised protein family UPF0102 HCD_05760 PF03447 Homoserine dehydrogenase, NAD binding domain HCD_05760 PF01842 ACT domain HCD_05760 PF00742 Homoserine dehydrogenase HCD_05765 PF01541 GIY-YIG catalytic domain HCD_05765 PF02151 UvrB/uvrC motif HCD_05765 PF08459 UvrC Helix-hairpin-helix N-terminal HCD_05775 PF00005 ABC transporter HCD_05775 PF08402 TOBE domain HCD_05780 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HCD_05805 PF00691 OmpA family HCD_05805 PF13677 Membrane MotB of proton-channel complex MotA/MotB HCD_05810 PF01618 MotA/TolQ/ExbB proton channel family HCD_05815 PF00899 ThiF family HCD_05820 PF00753 Metallo-beta-lactamase superfamily HCD_05865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HCD_05865 PF02142 MGS-like domain HCD_05865 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HCD_05870 PF01027 Inhibitor of apoptosis-promoting Bax1 HCD_05875 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HCD_05875 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HCD_05890 PF01361 Tautomerase enzyme HCD_05895 PF02132 RecR protein HCD_05900 PF01142 tRNA pseudouridine synthase D (TruD) HCD_05905 PF01435 Peptidase family M48 HCD_05910 PF01227 GTP cyclohydrolase I HCD_05915 PF00348 Polyprenyl synthetase HCD_05920 PF01975 Survival protein SurE HCD_05930 PF01242 6-pyruvoyl tetrahydropterin synthase HCD_05955 PF02384 N-6 DNA Methylase HCD_05965 PF00749 tRNA synthetases class I (E and Q), catalytic domain HCD_05975 PF00999 Sodium/hydrogen exchanger family HCD_05975 PF02254 TrkA-N domain HCD_06020 PF13089 Polyphosphate kinase N-terminal domain HCD_06020 PF17941 Polyphosphate kinase C-terminal domain 1 HCD_06020 PF13090 Polyphosphate kinase C-terminal domain 2 HCD_06020 PF02503 Polyphosphate kinase middle domain HCD_06025 PF01180 Dihydroorotate dehydrogenase HCD_06035 PF00701 Dihydrodipicolinate synthetase family HCD_06050 PF01066 CDP-alcohol phosphatidyltransferase HCD_06055 PF00324 Amino acid permease HCD_06060 PF13180 PDZ domain HCD_06060 PF17820 PDZ domain HCD_06065 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HCD_06065 PF02542 YgbB family HCD_06070 PF00486 Transcriptional regulatory protein, C terminal HCD_06070 PF00072 Response regulator receiver domain HCD_06075 PF01612 3'-5' exonuclease HCD_06075 PF01367 5'-3' exonuclease, C-terminal SAM fold HCD_06075 PF00476 DNA polymerase family A HCD_06075 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HCD_06085 PF01556 DnaJ C terminal domain HCD_06085 PF00226 DnaJ domain HCD_06090 PF13411 MerR HTH family regulatory protein HCD_06095 PF16193 AAA C-terminal domain HCD_06095 PF05496 Holliday junction DNA helicase RuvB P-loop domain HCD_06095 PF01661 Macro domain HCD_06095 PF12002 MgsA AAA+ ATPase C terminal HCD_06100 PF01475 Ferric uptake regulator family HCD_06115 PF04509 CheC-like family HCD_06115 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HCD_06120 PF02154 Flagellar motor switch protein FliM HCD_06120 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HCD_06125 PF04545 Sigma-70, region 4 HCD_06125 PF04539 Sigma-70 region 3 HCD_06125 PF04542 Sigma-70 region 2 HCD_06135 PF10609 NUBPL iron-transfer P-loop NTPase HCD_06140 PF00448 SRP54-type protein, GTPase domain HCD_06145 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HCD_06150 PF01321 Creatinase/Prolidase N-terminal domain HCD_06150 PF00557 Metallopeptidase family M24 HCD_06155 PF01220 Dehydroquinase class II HCD_06165 PF00312 Ribosomal protein S15 HCD_06180 PF07282 Putative transposase DNA-binding domain HCD_06180 PF12323 Helix-turn-helix domain HCD_06180 PF01385 Probable transposase HCD_06185 PF01797 Transposase IS200 like HCD_06195 PF08238 Sel1 repeat HCD_06195 PF13176 Tetratricopeptide repeat HCD_06195 PF13181 Tetratricopeptide repeat HCD_06205 PF03900 Porphobilinogen deaminase, C-terminal domain HCD_06205 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HCD_06210 PF03129 Anticodon binding domain HCD_06210 PF04073 Aminoacyl-tRNA editing domain HCD_06210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HCD_06215 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HCD_06215 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HCD_06215 PF01488 Shikimate / quinate 5-dehydrogenase HCD_06220 PF00348 Polyprenyl synthetase HCD_06235 PF00210 Ferritin-like domain HCD_06240 PF00512 His Kinase A (phospho-acceptor) domain HCD_06240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCD_06250 PF02119 Flagellar P-ring protein HCD_06255 PF00271 Helicase conserved C-terminal domain HCD_06255 PF00270 DEAD/DEAH box helicase HCD_06270 PF01925 Sulfite exporter TauE/SafE HCD_06290 PF00145 C-5 cytosine-specific DNA methylase HCD_06300 PF00902 Sec-independent protein translocase protein (TatC) HCD_06305 PF02547 Queuosine biosynthesis protein HCD_06310 PF02527 rRNA small subunit methyltransferase G HCD_06340 PF00004 ATPase family associated with various cellular activities (AAA) HCD_06340 PF17862 AAA+ lid domain HCD_06340 PF01434 Peptidase family M41 HCD_06350 PF01066 CDP-alcohol phosphatidyltransferase HCD_06355 PF00403 Heavy-metal-associated domain HCD_06360 PF00403 Heavy-metal-associated domain HCD_06365 PF00403 Heavy-metal-associated domain HCD_06395 PF03824 High-affinity nickel-transport protein HCD_06415 PF00664 ABC transporter transmembrane region HCD_06415 PF00005 ABC transporter HCD_06425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HCD_06425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HCD_06435 PF01728 FtsJ-like methyltransferase HCD_06435 PF01479 S4 domain HCD_06440 PF06574 FAD synthetase HCD_06440 PF01687 Riboflavin kinase HCD_06445 PF00456 Transketolase, thiamine diphosphate binding domain HCD_06445 PF02780 Transketolase, C-terminal domain HCD_06445 PF02779 Transketolase, pyrimidine binding domain HCD_06455 PF01580 FtsK/SpoIIIE family HCD_06455 PF09397 Ftsk gamma domain HCD_06455 PF17854 FtsK alpha domain HCD_06460 PF00083 Sugar (and other) transporter HCD_06465 PF00460 Flagella basal body rod protein HCD_06465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HCD_06475 PF00881 Nitroreductase family HCD_06480 PF01790 Prolipoprotein diacylglyceryl transferase HCD_06485 PF00849 RNA pseudouridylate synthase HCD_06490 PF00534 Glycosyl transferases group 1 HCD_06490 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HCD_06500 PF01784 NIF3 (NGG1p interacting factor 3) HCD_06505 PF02091 Glycyl-tRNA synthetase alpha subunit HCD_06510 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HCD_06510 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HCD_06535 PF02899 Phage integrase, N-terminal SAM-like domain HCD_06535 PF00589 Phage integrase family HCD_06540 PF07804 HipA-like C-terminal domain HCD_06555 PF07804 HipA-like C-terminal domain HCD_06575 PF00872 Transposase, Mutator family HCD_06590 PF01924 Hydrogenase formation hypA family HCD_06595 PF01455 HupF/HypC family HCD_06600 PF02492 CobW/HypB/UreG, nucleotide-binding domain HCD_06610 PF00871 Acetokinase family HCD_06615 PF01515 Phosphate acetyl/butaryl transferase HCD_06625 PF13860 FlgD Ig-like domain HCD_06625 PF03963 Flagellar hook capping protein - N-terminal region HCD_06625 PF13861 FlgD Tudor-like domain HCD_06630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HCD_06630 PF07559 Flagellar basal body protein FlaE HCD_06630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HCD_06630 PF00460 Flagella basal body rod protein HCD_06630 PF07559 Flagellar basal body protein FlaE HCD_06630 PF00460 Flagella basal body rod protein HCD_06660 PF00005 ABC transporter HCD_06665 PF01032 FecCD transport family HCD_06670 PF00106 short chain dehydrogenase HCD_06675 PF03061 Thioesterase superfamily HCD_06690 PF00873 AcrB/AcrD/AcrF family HCD_06705 PF02092 Glycyl-tRNA synthetase beta subunit HCD_06715 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HCD_06715 PF01676 Metalloenzyme superfamily HCD_06720 PF02686 Glu-tRNAGln amidotransferase C subunit HCD_06725 PF00210 Ferritin-like domain HCD_06735 PF18025 Alpha-(1,3)-fucosyltransferase FucT N-terminal domain HCD_06735 PF00852 Glycosyltransferase family 10 (fucosyltransferase) C-term HCD_06740 PF00852 Glycosyltransferase family 10 (fucosyltransferase) C-term HCD_06740 PF18025 Alpha-(1,3)-fucosyltransferase FucT N-terminal domain HCD_06750 PF00206 Lyase HCD_06750 PF10415 Fumarase C C-terminus HCD_06755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HCD_06765 PF00483 Nucleotidyl transferase HCD_06770 PF01464 Transglycosylase SLT domain HCD_06770 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HCD_06775 PF02325 YGGT family HCD_06780 PF00749 tRNA synthetases class I (E and Q), catalytic domain HCD_06785 PF01171 PP-loop family HCD_06790 PF04055 Radical SAM superfamily HCD_06790 PF00919 Uncharacterized protein family UPF0004 HCD_06795 PF00156 Phosphoribosyl transferase domain HCD_06800 PF00266 Aminotransferase class-V HCD_06805 PF04608 Phosphatidylglycerophosphatase A HCD_06810 PF07478 D-ala D-ala ligase C-terminus HCD_06810 PF01820 D-ala D-ala ligase N-terminus HCD_06820 PF08245 Mur ligase middle domain HCD_06820 PF02875 Mur ligase family, glutamate ligase domain HCD_06820 PF01225 Mur ligase family, catalytic domain HCD_06825 PF01230 HIT domain HCD_06830 PF14572 Phosphoribosyl synthetase-associated domain HCD_06830 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HCD_06835 PF01098 Cell cycle protein HCD_06840 PF01479 S4 domain HCD_06840 PF00849 RNA pseudouridylate synthase HCD_06850 PF02390 Putative methyltransferase HCD_06855 PF00005 ABC transporter HCD_06870 PF01554 MatE HCD_06875 PF03553 Na+/H+ antiporter family HCD_06875 PF13726 Na+-H+ antiporter family HCD_06885 PF00899 ThiF family HCD_06885 PF00581 Rhodanese-like domain HCD_06895 PF02561 Flagellar protein FliS HCD_06900 PF02465 Flagellar hook-associated protein 2 N-terminus HCD_06900 PF07195 Flagellar hook-associated protein 2 C-terminus HCD_06910 PF12072 Domain of unknown function (DUF3552) HCD_06910 PF01966 HD domain HCD_06910 PF00013 KH domain HCD_06925 PF00448 SRP54-type protein, GTPase domain HCD_06940 PF04055 Radical SAM superfamily HCD_06940 PF06463 Molybdenum Cofactor Synthesis C HCD_06945 PF12804 MobA-like NTP transferase domain HCD_06950 PF01312 FlhB HrpN YscU SpaS Family HCD_06955 PF06434 Aconitate hydratase 2 N-terminus HCD_06955 PF11791 Aconitate B N-terminal domain HCD_06955 PF00330 Aconitase family (aconitate hydratase) HCD_06980 PF01520 N-acetylmuramoyl-L-alanine amidase HCD_06990 PF01479 S4 domain HCD_06990 PF00579 tRNA synthetases class I (W and Y) HCD_06995 PF13291 ACT domain HCD_06995 PF04607 Region found in RelA / SpoT proteins HCD_06995 PF02824 TGS domain HCD_07000 PF01192 RNA polymerase Rpb6 HCD_07005 PF00696 Amino acid kinase family HCD_07010 PF00202 Aminotransferase class-III HCD_07015 PF13145 PPIC-type PPIASE domain HCD_07020 PF02491 SHS2 domain inserted in FTSA HCD_07025 PF12327 FtsZ family, C-terminal domain HCD_07025 PF00091 Tubulin/FtsZ family, GTPase domain HCD_07065 PF04715 Anthranilate synthase component I, N terminal region HCD_07065 PF00425 chorismate binding enzyme HCD_07080 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HCD_07080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HCD_07100 PF03738 Glutathionylspermidine synthase preATP-grasp HCD_07115 PF02348 Cytidylyltransferase HCD_07120 PF01740 STAS domain HCD_07120 PF00916 Sulfate permease family HCD_07130 PF01361 Tautomerase enzyme HCD_07135 PF03144 Elongation factor Tu domain 2 HCD_07135 PF09106 Elongation factor SelB, winged helix HCD_07135 PF09106 Elongation factor SelB, winged helix HCD_07135 PF03144 Elongation factor Tu domain 2 HCD_07135 PF09107 Elongation factor SelB, winged helix HCD_07135 PF00009 Elongation factor Tu GTP binding domain HCD_07135 PF00009 Elongation factor Tu GTP binding domain HCD_07135 PF09107 Elongation factor SelB, winged helix HCD_07150 PF00202 Aminotransferase class-III HCD_07160 PF01926 50S ribosome-binding GTPase HCD_07160 PF01018 GTP1/OBG HCD_07165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HCD_07165 PF00005 ABC transporter HCD_07170 PF00005 ABC transporter HCD_07170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HCD_07175 PF00528 Binding-protein-dependent transport system inner membrane component HCD_07175 PF12911 N-terminal TM domain of oligopeptide transport permease C HCD_07180 PF00528 Binding-protein-dependent transport system inner membrane component HCD_07185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HCD_07190 PF01016 Ribosomal L27 protein HCD_07195 PF00829 Ribosomal prokaryotic L21 protein HCD_07220 PF17810 Arginine decarboxylase helical bundle domain HCD_07220 PF17944 Arginine decarboxylase C-terminal helical extension HCD_07220 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HCD_07250 PF00133 tRNA synthetases class I (I, L, M and V) HCD_07250 PF09334 tRNA synthetases class I (M) HCD_07250 PF01588 Putative tRNA binding domain HCD_07260 PF00924 Mechanosensitive ion channel HCD_07275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HCD_07275 PF00460 Flagella basal body rod protein HCD_07275 PF07559 Flagellar basal body protein FlaE HCD_07290 PF00145 C-5 cytosine-specific DNA methylase HCD_07305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HCD_07315 PF00691 OmpA family HCD_07320 PF07676 WD40-like Beta Propeller Repeat HCD_07330 PF02472 Biopolymer transport protein ExbD/TolR HCD_07335 PF01618 MotA/TolQ/ExbB proton channel family HCD_07340 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HCD_07345 PF02874 ATP synthase alpha/beta family, beta-barrel domain HCD_07345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HCD_07350 PF00231 ATP synthase HCD_07355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HCD_07355 PF00306 ATP synthase alpha/beta chain, C terminal domain HCD_07355 PF02874 ATP synthase alpha/beta family, beta-barrel domain HCD_07360 PF00213 ATP synthase delta (OSCP) subunit HCD_07365 PF00430 ATP synthase B/B' CF(0) HCD_07375 PF02195 ParB-like nuclease domain HCD_07375 PF17762 HTH domain found in ParB protein HCD_07380 PF13614 AAA domain HCD_07385 PF03309 Type III pantothenate kinase HCD_07385 PF03099 Biotin/lipoate A/B protein ligase family HCD_07385 PF02237 Biotin protein ligase C terminal domain HCD_07390 PF00551 Formyl transferase HCD_07390 PF02911 Formyl transferase, C-terminal domain HCD_07395 PF13166 AAA domain HCD_07415 PF02151 UvrB/uvrC motif HCD_07415 PF17757 UvrB interaction domain HCD_07415 PF12344 Ultra-violet resistance protein B HCD_07415 PF00271 Helicase conserved C-terminal domain HCD_07415 PF04851 Type III restriction enzyme, res subunit HCD_07425 PF00183 Hsp90 protein HCD_07435 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HCD_07440 PF00270 DEAD/DEAH box helicase HCD_07440 PF00271 Helicase conserved C-terminal domain HCD_07440 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HCD_07440 PF18074 Primosomal protein N C-terminal domain HCD_07440 PF17764 3′ DNA-binding domain (3′BD) HCD_07460 PF07282 Putative transposase DNA-binding domain HCD_07460 PF12323 Helix-turn-helix domain HCD_07460 PF01385 Probable transposase HCD_07465 PF01797 Transposase IS200 like HCD_07470 PF00145 C-5 cytosine-specific DNA methylase HCD_07475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HCD_07495 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HCD_07495 PF00289 Biotin carboxylase, N-terminal domain HCD_07495 PF02785 Biotin carboxylase C-terminal domain HCD_07500 PF00364 Biotin-requiring enzyme HCD_07505 PF00692 dUTPase HCD_07515 PF04452 RNA methyltransferase HCD_07525 PF00762 Ferrochelatase HCD_07535 PF01578 Cytochrome C assembly protein HCD_07535 PF05140 ResB-like family HCD_07545 PF12728 Helix-turn-helix domain HCD_07545 PF02661 Fic/DOC family HCD_07580 PF12728 Helix-turn-helix domain HCD_07580 PF02661 Fic/DOC family HCD_07585 PF02534 Type IV secretory system Conjugative DNA transfer HCD_07620 PF01751 Toprim domain HCD_07620 PF01131 DNA topoisomerase HCD_07640 PF00437 Type II/IV secretion system protein HCD_07670 PF03135 CagE, TrbE, VirB family, component of type IV transporter system HCD_07700 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HCD_07705 PF04055 Radical SAM superfamily HCD_07710 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HCD_07715 PF00293 NUDIX domain HCD_07720 PF13840 ACT domain HCD_07720 PF01842 ACT domain HCD_07720 PF00696 Amino acid kinase family HCD_07730 PF12169 DNA polymerase III subunits gamma and tau domain III HCD_07735 PF00809 Pterin binding enzyme HCD_07750 PF01474 Class-II DAHP synthetase family HCD_07755 PF03222 Tryptophan/tyrosine permease family HCD_07760 PF03315 Serine dehydratase beta chain HCD_07760 PF03313 Serine dehydratase alpha chain HCD_07770 PF07282 Putative transposase DNA-binding domain HCD_07770 PF01385 Probable transposase HCD_07770 PF12323 Helix-turn-helix domain HCD_07775 PF01797 Transposase IS200 like HCD_07790 PF12323 Helix-turn-helix domain HCD_07790 PF01385 Probable transposase HCD_07790 PF07282 Putative transposase DNA-binding domain HCD_07795 PF01797 Transposase IS200 like HCD_07805 PF07992 Pyridine nucleotide-disulphide oxidoreductase HCD_07820 PF00258 Flavodoxin HCD_07825 PF02130 Uncharacterized protein family UPF0054 HCD_07830 PF14748 Pyrroline-5-carboxylate reductase dimerisation HCD_07830 PF03807 NADP oxidoreductase coenzyme F420-dependent HCD_07845 PF01797 Transposase IS200 like HCD_07850 PF01385 Probable transposase HCD_07850 PF12323 Helix-turn-helix domain HCD_07850 PF07282 Putative transposase DNA-binding domain HCD_07855 PF04101 Glycosyltransferase family 28 C-terminal domain HCD_07855 PF03033 Glycosyltransferase family 28 N-terminal domain HCD_07860 PF02623 FliW protein HCD_07865 PF08264 Anticodon-binding domain of tRNA HCD_07865 PF00133 tRNA synthetases class I (I, L, M and V) HCD_07865 PF10458 Valyl tRNA synthetase tRNA binding arm HCD_07870 PF00448 SRP54-type protein, GTPase domain HCD_07870 PF02881 SRP54-type protein, helical bundle domain HCD_07870 PF02978 Signal peptide binding domain HCD_07875 PF00886 Ribosomal protein S16 HCD_07885 PF01782 RimM N-terminal domain HCD_07885 PF05239 PRC-barrel domain HCD_07890 PF01746 tRNA (Guanine-1)-methyltransferase HCD_07895 PF01245 Ribosomal protein L19 HCD_07935 PF01751 Toprim domain HCD_07935 PF01131 DNA topoisomerase HCD_07940 PF07282 Putative transposase DNA-binding domain HCD_07940 PF12323 Helix-turn-helix domain HCD_07940 PF01385 Probable transposase HCD_07945 PF01797 Transposase IS200 like HCD_07980 PF08240 Alcohol dehydrogenase GroES-like domain HCD_07980 PF00107 Zinc-binding dehydrogenase HCD_08000 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HCD_08010 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HCD_08010 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HCD_08015 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HCD_08020 PF10397 Adenylosuccinate lyase C-terminus HCD_08020 PF00206 Lyase HCD_08030 PF01546 Peptidase family M20/M25/M40 HCD_08030 PF07687 Peptidase dimerisation domain HCD_08035 PF01134 Glucose inhibited division protein A HCD_08035 PF13932 GidA associated domain HCD_08040 PF00939 Sodium:sulfate symporter transmembrane region HCD_08050 PF13288 DXP reductoisomerase C-terminal domain HCD_08050 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HCD_08050 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HCD_08070 PF00872 Transposase, Mutator family HCD_08090 PF01797 Transposase IS200 like HCD_08095 PF01385 Probable transposase HCD_08095 PF12323 Helix-turn-helix domain HCD_08095 PF07282 Putative transposase DNA-binding domain HCD_08115 PF05496 Holliday junction DNA helicase RuvB P-loop domain HCD_08115 PF05491 RuvB C-terminal winged helix domain HCD_08115 PF17864 RuvB AAA lid domain HCD_08120 PF02548 Ketopantoate hydroxymethyltransferase HCD_08145 PF03775 Septum formation inhibitor MinC, C-terminal domain HCD_08150 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HCD_08160 PF00288 GHMP kinases N terminal domain HCD_08170 PF04760 Translation initiation factor IF-2, N-terminal region HCD_08170 PF11987 Translation-initiation factor 2 HCD_08170 PF00009 Elongation factor Tu GTP binding domain HCD_08175 PF02033 Ribosome-binding factor A HCD_08180 PF02576 RimP N-terminal domain HCD_08180 PF17384 RimP C-terminal SH3 domain HCD_08205 PF18211 Csm1 subunit domain B HCD_08210 PF18211 Csm1 subunit domain B HCD_08235 PF16491 CAAX prenyl protease N-terminal, five membrane helices HCD_08235 PF01435 Peptidase family M48 HCD_08240 PF17827 PrmC N-terminal domain HCD_08240 PF05175 Methyltransferase small domain HCD_08245 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HCD_08245 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HCD_08250 PF01161 Phosphatidylethanolamine-binding protein HCD_08260 PF00266 Aminotransferase class-V HCD_08265 PF01592 NifU-like N terminal domain HCD_08265 PF01106 NifU-like domain HCD_08265 PF04324 BFD-like [2Fe-2S] binding domain HCD_08275 PF18073 Rubredoxin metal binding domain HCD_08280 PF01641 SelR domain HCD_08280 PF01625 Peptide methionine sulfoxide reductase HCD_08285 PF03432 Relaxase/Mobilisation nuclease domain HCD_08325 PF01797 Transposase IS200 like HCD_08330 PF12323 Helix-turn-helix domain HCD_08330 PF07282 Putative transposase DNA-binding domain HCD_08330 PF01385 Probable transposase HCD_08335 PF02534 Type IV secretory system Conjugative DNA transfer HCD_08340 PF02661 Fic/DOC family HCD_08340 PF12728 Helix-turn-helix domain HCD_08360 PF02899 Phage integrase, N-terminal SAM-like domain HCD_08360 PF00589 Phage integrase family HCD_08375 PF13614 AAA domain HCD_08415 PF02913 FAD linked oxidases, C-terminal domain HCD_08415 PF01565 FAD binding domain HCD_08420 PF01255 Putative undecaprenyl diphosphate synthase HCD_08425 PF00005 ABC transporter HCD_08435 PF08238 Sel1 repeat HCD_08440 PF01081 KDPG and KHG aldolase HCD_08445 PF00920 Dehydratase family HCD_08450 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HCD_08450 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HCD_08455 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HCD_08460 PF02685 Glucokinase HCD_08465 PF00145 C-5 cytosine-specific DNA methylase HCD_08480 PF00342 Phosphoglucose isomerase HCD_08490 PF13722 5TM C-terminal transporter carbon starvation CstA HCD_08490 PF02554 Carbon starvation protein CstA HCD_08495 PF00528 Binding-protein-dependent transport system inner membrane component HCD_08500 PF00528 Binding-protein-dependent transport system inner membrane component HCD_08505 PF00005 ABC transporter HCD_08510 PF00497 Bacterial extracellular solute-binding proteins, family 3 HCD_08510 PF01464 Transglycosylase SLT domain HCD_08530 PF07690 Major Facilitator Superfamily HCD_08535 PF00860 Permease family HCD_08555 PF02769 AIR synthase related protein, C-terminal domain HCD_08555 PF00586 AIR synthase related protein, N-terminal domain HCD_08560 PF01300 Telomere recombination HCD_08560 PF17788 HypF Kae1-like domain HCD_08560 PF00708 Acylphosphatase HCD_08560 PF07503 HypF finger HCD_08565 PF04371 Porphyromonas-type peptidyl-arginine deiminase HCD_08570 PF01555 DNA methylase HCD_08575 PF00145 C-5 cytosine-specific DNA methylase HCD_08590 PF00814 Glycoprotease family HCD_08595 PF02086 D12 class N6 adenine-specific DNA methyltransferase HCD_08605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HCD_08605 PF00460 Flagella basal body rod protein HCD_08625 PF01381 Helix-turn-helix HCD_08625 PF00145 C-5 cytosine-specific DNA methylase HCD_08630 PF00145 C-5 cytosine-specific DNA methylase HCD_08630 PF01381 Helix-turn-helix HCD_08640 PF03981 Ubiquinol-cytochrome C chaperone HCD_08640 PF13099 Domain of unknown function (DUF3944) HCD_08729 PF07282 Putative transposase DNA-binding domain HCD_08729 PF01385 Probable transposase HCD_08729 PF12323 Helix-turn-helix domain HCD_08734 PF01797 Transposase IS200 like HCD_08749 PF03432 Relaxase/Mobilisation nuclease domain HCD_08764 PF12323 Helix-turn-helix domain HCD_08764 PF07282 Putative transposase DNA-binding domain HCD_08764 PF01385 Probable transposase HCD_08769 PF01797 Transposase IS200 like