HCD_00005 PF01029 NusB family HCD_00010 PF00885 6,7-dimethyl-8-ribityllumazine synthase HCD_00015 PF00793 DAHP synthetase I family HCD_00020 PF00484 Carbonic anhydrase HCD_00025 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HCD_00030 PF02569 Pantoate-beta-alanine ligase HCD_00035 PF00118 TCP-1/cpn60 chaperonin family HCD_00040 PF00166 Chaperonin 10 Kd subunit HCD_00045 PF01856 HCD_00045 HCD_00050 PF01856 HCD_00050 HCD_00055 PF01370 NAD dependent epimerase/dehydratase family HCD_00060 PF16363 HCD_00060 HCD_00075 PF03743 Bacterial conjugation TrbI-like protein HCD_00080 PF03524 Conjugal transfer protein HCD_00085 PF04335 VirB8 protein HCD_00095 PF04610 HCD_00095 HCD_00100 PF13180 PDZ domain HCD_00105 PF02575 YbaB/EbfC DNA-binding family HCD_00110 PF02261 Aspartate decarboxylase HCD_00115 PF00004 ATPase family associated with various cellular activities (AAA) HCD_00115 PF02861 Clp amino terminal domain HCD_00115 PF07724 AAA domain (Cdc48 subfamily) HCD_00115 PF10431 C-terminal, D2-small domain, of ClpB protein HCD_00120 PF02617 ATP-dependent Clp protease adaptor protein ClpS HCD_00125 PF00582 Universal stress protein family HCD_00130 PF13500 AAA domain HCD_00135 PF07509 HCD_00135 HCD_00140 PF00180 Isocitrate/isopropylmalate dehydrogenase HCD_00145 PF00285 Citrate synthase HCD_00150 PF01856 HCD_00150 HCD_00155 PF00884 Sulfatase HCD_00155 PF08019 HCD_00155 HCD_00160 PF01569 PAP2 superfamily HCD_00165 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HCD_00170 PF00072 Response regulator receiver domain HCD_00170 PF01584 CheW-like domain HCD_00180 PF01580 FtsK/SpoIIIE family HCD_00180 PF03135 HCD_00180 HCD_00190 PF04956 HCD_00190 HCD_00200 PF03054 tRNA methyl transferase HCD_00205 PF01807 CHC2 zinc finger HCD_00205 PF08275 DNA primase catalytic core, N-terminal domain HCD_00205 PF13662 Toprim domain HCD_00205 PF16730 HCD_00205 HCD_00210 PF12033 HCD_00210 HCD_00225 PF00872 HCD_00225 HCD_00230 PF00872 HCD_00230 HCD_00255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HCD_00255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HCD_00260 PF02504 Fatty acid synthesis protein HCD_00265 PF01783 Ribosomal L32p protein family HCD_00275 PF00334 Nucleoside diphosphate kinase HCD_00280 PF00438 S-adenosylmethionine synthetase, N-terminal domain HCD_00280 PF02772 S-adenosylmethionine synthetase, central domain HCD_00280 PF02773 S-adenosylmethionine synthetase, C-terminal domain HCD_00285 PF00132 Bacterial transferase hexapeptide (six repeats) HCD_00285 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HCD_00290 PF13561 Enoyl-(Acyl carrier protein) reductase HCD_00295 PF00121 Triosephosphate isomerase HCD_00300 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HCD_00305 PF00890 FAD binding domain HCD_00305 PF02910 Fumarate reductase flavoprotein C-term HCD_00310 PF13085 2Fe-2S iron-sulfur cluster binding domain HCD_00310 PF13183 4Fe-4S dicluster domain HCD_00315 PF13091 PLD-like domain HCD_00320 PF01856 HCD_00320 HCD_00330 PF01084 Ribosomal protein S18 HCD_00335 PF00436 Single-strand binding protein family HCD_00340 PF01250 Ribosomal protein S6 HCD_00345 PF06144 DNA polymerase III, delta subunit HCD_00350 PF00773 RNB domain HCD_00355 PF08501 Shikimate dehydrogenase substrate binding domain HCD_00360 PF08239 Bacterial SH3 domain HCD_00365 PF00528 Binding-protein-dependent transport system inner membrane component HCD_00370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HCD_00375 PF00579 tRNA synthetases class I (W and Y) HCD_00380 PF13847 Methyltransferase domain HCD_00385 PF03840 Preprotein translocase SecG subunit HCD_00390 PF01765 Ribosome recycling factor HCD_00395 PF00156 Phosphoribosyl transferase domain HCD_00400 PF06271 HCD_00400 HCD_00405 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HCD_00410 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HCD_00415 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HCD_00420 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HCD_00425 PF16514 HCD_00425 HCD_00435 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HCD_00435 PF13510 2Fe-2S iron-sulfur cluster binding domain HCD_00440 PF00146 NADH dehydrogenase HCD_00445 PF12838 4Fe-4S dicluster domain HCD_00450 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HCD_00455 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HCD_00460 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains HCD_00460 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HCD_00465 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains HCD_00470 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains HCD_00475 PF09976 Tetratricopeptide repeat HCD_00480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HCD_00480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HCD_00480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HCD_00480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HCD_00485 PF13274 HCD_00485 HCD_00495 PF04263 Thiamin pyrophosphokinase, catalytic domain HCD_00500 PF04973 HCD_00500 HCD_00505 PF03070 TENA/THI-4/PQQC family HCD_00515 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HCD_00520 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HCD_00525 PF17278 HCD_00525 HCD_00530 PF00145 C-5 cytosine-specific DNA methylase HCD_00535 PF00145 C-5 cytosine-specific DNA methylase HCD_00540 PF00425 chorismate binding enzyme HCD_00540 PF04715 Anthranilate synthase component I, N terminal region HCD_00545 PF00117 Glutamine amidotransferase class-I HCD_00550 PF00591 Glycosyl transferase family, a/b domain HCD_00550 PF02885 Glycosyl transferase family, helical bundle domain HCD_00555 PF00218 Indole-3-glycerol phosphate synthase HCD_00555 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HCD_00560 PF00291 Pyridoxal-phosphate dependent enzyme HCD_00565 PF00290 Tryptophan synthase alpha chain HCD_00595 PF07510 HCD_00595 HCD_00605 PF08238 Sel1 repeat HCD_00620 PF01679 HCD_00620 HCD_00630 PF14281 HCD_00630 HCD_00645 PF14489 QueF-like protein HCD_00650 PF02410 Oligomerisation domain HCD_00655 PF01715 IPP transferase HCD_00660 PF13274 HCD_00660 HCD_00670 PF01501 Glycosyl transferase family 8 HCD_00675 PF13651 HCD_00675 HCD_00680 PF02963 Restriction endonuclease EcoRI HCD_00685 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HCD_00690 PF01313 HCD_00690 HCD_00695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HCD_00700 PF00437 Type II/IV secretion system protein HCD_00705 PF00133 tRNA synthetases class I (I, L, M and V) HCD_00705 PF08264 Anticodon-binding domain of tRNA HCD_00710 PF01479 S4 domain HCD_00720 PF01856 HCD_00720 HCD_00730 PF00398 Ribosomal RNA adenine dimethylase HCD_00735 PF00753 Metallo-beta-lactamase superfamily HCD_00735 PF07521 RNA-metabolising metallo-beta-lactamase HCD_00740 PF00571 CBS domain HCD_00740 PF01380 SIS domain HCD_00745 PF04055 Radical SAM superfamily HCD_00745 PF13394 4Fe-4S single cluster domain HCD_00750 PF01856 HCD_00750 HCD_00760 PF00083 Sugar (and other) transporter HCD_00770 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HCD_00775 PF02599 Global regulator protein family HCD_00780 PF00288 GHMP kinases N terminal domain HCD_00785 PF01668 SmpB protein HCD_00790 PF01618 HCD_00790 HCD_00795 PF02472 Biopolymer transport protein ExbD/TolR HCD_00800 PF00468 Ribosomal protein L34 HCD_00805 PF00825 Ribonuclease P HCD_00810 PF01809 HCD_00810 HCD_00815 PF02096 60Kd inner membrane protein HCD_00815 PF14849 YidC periplasmic domain HCD_00820 PF14804 Jag N-terminus HCD_00825 PF01926 50S ribosome-binding GTPase HCD_00825 PF10396 GTP-binding protein TrmE N-terminus HCD_00825 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE HCD_00835 PF01856 HCD_00835 HCD_00855 PF01343 Peptidase family S49 HCD_00860 PF00551 Formyl transferase HCD_00865 PF02169 LPP20 lipoprotein HCD_00875 PF02169 LPP20 lipoprotein HCD_00880 PF13036 Protein of unknown function (DUF3897) HCD_00885 PF00085 Thioredoxin HCD_00890 PF01501 Glycosyl transferase family 8 HCD_00925 PF13252 HCD_00925 HCD_00970 PF12033 HCD_00970 HCD_00990 PF05106 HCD_00990 HCD_01015 PF01385 HCD_01015 HCD_01015 PF07282 HCD_01015 HCD_01015 PF12323 HCD_01015 HCD_01020 PF01797 Transposase IS200 like HCD_01030 PF01856 HCD_01030 HCD_01035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_01040 PF00989 PAS fold HCD_01050 PF01856 HCD_01050 HCD_01055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_01060 PF01795 MraW methylase family HCD_01080 PF13023 HD domain HCD_01085 PF00309 HCD_01085 HCD_01085 PF04552 Sigma-54, DNA binding domain HCD_01085 PF04963 Sigma-54 factor, core binding domain HCD_01090 PF00005 ABC transporter HCD_01095 PF02367 Uncharacterised P-loop hydrolase UPF0079 HCD_01100 PF13177 DNA polymerase III, delta subunit HCD_01105 PF03605 HCD_01105 HCD_01110 PF00710 Asparaginase HCD_01115 PF06518 Protein of unknown function (DUF1104) HCD_01120 PF06518 Protein of unknown function (DUF1104) HCD_01125 PF03601 HCD_01125 HCD_01130 PF01810 HCD_01130 HCD_01135 PF01856 HCD_01135 HCD_01140 PF01207 Dihydrouridine synthase (Dus) HCD_01145 PF01743 Poly A polymerase head domain HCD_01145 PF12627 Probable RNA and SrmB- binding site of polymerase A HCD_01150 PF06508 Queuosine biosynthesis protein QueC HCD_01175 PF01750 Hydrogenase maturation protease HCD_01180 PF01292 Prokaryotic cytochrome b561 HCD_01185 PF00374 Nickel-dependent hydrogenase HCD_01190 PF01797 Transposase IS200 like HCD_01195 PF01385 HCD_01195 HCD_01195 PF07282 HCD_01195 HCD_01195 PF12323 HCD_01195 HCD_01200 PF00374 Nickel-dependent hydrogenase HCD_01205 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HCD_01205 PF10518 TAT (twin-arginine translocation) pathway signal sequence HCD_01205 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HCD_01215 PF01856 HCD_01215 HCD_01220 PF00873 AcrB/AcrD/AcrF family HCD_01225 PF16576 HCD_01225 HCD_01230 PF02321 Outer membrane efflux protein HCD_01235 PF01208 Uroporphyrinogen decarboxylase (URO-D) HCD_01245 PF00633 Helix-hairpin-helix motif HCD_01245 PF00730 HhH-GPD superfamily base excision DNA repair protein HCD_01250 PF00669 Bacterial flagellin N-terminal helical region HCD_01250 PF00700 Bacterial flagellin C-terminal helical region HCD_01250 PF07196 Flagellin hook IN motif HCD_01255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_01255 PF13682 Chemoreceptor zinc-binding domain HCD_01260 PF00155 Aminotransferase class I and II HCD_01265 PF00905 Penicillin binding protein transpeptidase domain HCD_01265 PF00912 Transglycosylase HCD_01270 PF16753 HCD_01270 HCD_01275 PF02600 Disulfide bond formation protein DsbB HCD_01295 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HCD_01300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HCD_01305 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HCD_01305 PF17147 HCD_01305 HCD_01310 PF13237 4Fe-4S dicluster domain HCD_01315 PF02618 YceG-like family HCD_01320 PF13109 HCD_01320 HCD_01320 PF13116 HCD_01320 HCD_01325 PF04023 FeoA domain HCD_01330 PF00633 Helix-hairpin-helix motif HCD_01330 PF00730 HhH-GPD superfamily base excision DNA repair protein HCD_01330 PF10576 Iron-sulfur binding domain of endonuclease III HCD_01335 PF01052 Surface presentation of antigens (SPOA) HCD_01345 PF03544 Gram-negative bacterial TonB protein C-terminal HCD_01355 PF13088 BNR repeat-like domain HCD_01365 PF00884 Sulfatase HCD_01370 PF00581 Rhodanese-like domain HCD_01375 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HCD_01375 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HCD_01380 PF00717 Peptidase S24-like HCD_01390 PF02502 Ribose/Galactose Isomerase HCD_01400 PF00156 Phosphoribosyl transferase domain HCD_01405 PF09335 HCD_01405 HCD_01410 PF00883 Cytosol aminopeptidase family, catalytic domain HCD_01410 PF02789 Cytosol aminopeptidase family, N-terminal domain HCD_01415 PF01926 50S ribosome-binding GTPase HCD_01415 PF06071 Protein of unknown function (DUF933) HCD_01420 PF13186 Iron-sulfur cluster-binding domain HCD_01425 PF01594 HCD_01425 HCD_01430 PF01678 Diaminopimelate epimerase HCD_01435 PF04224 HCD_01435 HCD_01440 PF16777 HCD_01440 HCD_01450 PF01165 Ribosomal protein S21 HCD_01455 PF13561 Enoyl-(Acyl carrier protein) reductase HCD_01460 PF00550 Phosphopantetheine attachment site HCD_01465 PF00109 Beta-ketoacyl synthase, N-terminal domain HCD_01465 PF02801 Beta-ketoacyl synthase, C-terminal domain HCD_01470 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HCD_01480 PF00593 TonB dependent receptor HCD_01480 PF07715 TonB-dependent Receptor Plug Domain HCD_01485 PF01856 HCD_01485 HCD_01490 PF01648 4'-phosphopantetheinyl transferase superfamily HCD_01495 PF03748 HCD_01495 HCD_01500 PF03602 Conserved hypothetical protein 95 HCD_01510 PF01856 HCD_01510 HCD_01515 PF09522 R HCD_01525 PF00204 DNA gyrase B HCD_01525 PF00986 DNA gyrase B subunit, carboxyl terminus HCD_01525 PF01751 Toprim domain HCD_01525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCD_01530 PF00712 DNA polymerase III beta subunit, N-terminal domain HCD_01530 PF02767 DNA polymerase III beta subunit, central domain HCD_01530 PF02768 DNA polymerase III beta subunit, C-terminal domain HCD_01535 PF02253 Phospholipase A1 HCD_01540 PF00209 Sodium:neurotransmitter symporter family HCD_01550 PF00209 Sodium:neurotransmitter symporter family HCD_01555 PF03061 Thioesterase superfamily HCD_01560 PF04359 Protein of unknown function (DUF493) HCD_01565 PF02875 Mur ligase family, glutamate ligase domain HCD_01565 PF08245 Mur ligase middle domain HCD_01570 PF00953 Glycosyl transferase family 4 HCD_01570 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HCD_01575 PF05211 Neuraminyllactose-binding hemagglutinin precursor (NLBH) HCD_01580 PF00830 Ribosomal L28 family HCD_01585 PF02080 TrkA-C domain HCD_01585 PF02254 TrkA-N domain HCD_01590 PF00076 RNA recognition motif HCD_01595 PF00119 ATP synthase A chain HCD_01600 PF00478 IMP dehydrogenase / GMP reductase domain HCD_01600 PF00571 CBS domain HCD_01605 PF01425 Amidase HCD_01610 PF01121 Dephospho-CoA kinase HCD_01615 PF01564 Spermine/spermidine synthase HCD_01615 PF17284 HCD_01615 HCD_01625 PF01926 50S ribosome-binding GTPase HCD_01625 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HCD_01630 PF00216 Bacterial DNA-binding protein HCD_01635 PF02169 LPP20 lipoprotein HCD_01645 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HCD_01650 PF02719 Polysaccharide biosynthesis protein HCD_01655 PF02441 Flavoprotein HCD_01655 PF04127 DNA / pantothenate metabolism flavoprotein HCD_01665 PF00872 HCD_01665 HCD_01670 PF00872 HCD_01670 HCD_01680 PF06002 Alpha-2,3-sialyltransferase (CST-I) HCD_01685 PF02348 Cytidylyltransferase HCD_01690 PF02350 UDP-N-acetylglucosamine 2-epimerase HCD_01695 PF03102 NeuB family HCD_01695 PF08666 SAF domain HCD_01700 PF02581 Thiamine monophosphate synthase/TENI HCD_01705 PF08543 Phosphomethylpyrimidine kinase HCD_01710 PF02110 Hydroxyethylthiazole kinase family HCD_01715 PF05066 HB1, ASXL, restriction endonuclease HTH domain HCD_01720 PF00005 ABC transporter HCD_01720 PF12848 ABC transporter HCD_01725 PF01797 Transposase IS200 like HCD_01730 PF12323 HCD_01730 HCD_01735 PF07282 HCD_01735 HCD_01760 PF13580 SIS domain HCD_01765 PF00294 pfkB family carbohydrate kinase HCD_01765 PF01467 Cytidylyltransferase HCD_01770 PF01370 NAD dependent epimerase/dehydratase family HCD_01775 PF13242 HAD-hyrolase-like HCD_01780 PF13386 HCD_01780 HCD_01785 PF03309 Type III pantothenate kinase HCD_01800 PF00692 dUTPase HCD_01805 PF01272 Transcription elongation factor, GreA/GreB, C-term HCD_01805 PF03449 Transcription elongation factor, N-terminal HCD_01810 PF02684 HCD_01810 HCD_01820 PF01155 Hydrogenase expression/synthesis hypA family HCD_01825 PF00460 Flagella basal body rod protein HCD_01825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HCD_01825 PF07196 Flagellin hook IN motif HCD_01825 PF07559 Flagellar basal body protein FlaE HCD_01830 PF03831 PhnA protein HCD_01830 PF08274 PhnA Zinc-Ribbon HCD_01845 PF00199 Catalase HCD_01845 PF06628 Catalase-related immune-responsive HCD_01860 PF02075 Crossover junction endodeoxyribonuclease RuvC HCD_01865 PF02691 Vacuolating cyotoxin HCD_01870 PF02691 Vacuolating cyotoxin HCD_01875 PF02691 Vacuolating cyotoxin HCD_01880 PF01330 RuvA N terminal domain HCD_01880 PF07499 RuvA, C-terminal domain HCD_01880 PF14520 Helix-hairpin-helix domain HCD_01885 PF03961 HCD_01885 HCD_01890 PF03023 HCD_01890 HCD_01895 PF01406 tRNA synthetases class I (C) catalytic domain HCD_01895 PF09190 DALR domain HCD_01900 PF02691 Vacuolating cyotoxin HCD_01905 PF12762 HCD_01905 HCD_01910 PF02086 D12 class N6 adenine-specific DNA methyltransferase HCD_01915 PF02086 D12 class N6 adenine-specific DNA methyltransferase HCD_01920 PF09491 AlwI restriction endonuclease HCD_01925 PF07669 Eco57I restriction-modification methylase HCD_01930 PF00580 UvrD/REP helicase N-terminal domain HCD_01930 PF13361 UvrD-like helicase C-terminal domain HCD_01950 PF00145 C-5 cytosine-specific DNA methylase HCD_01955 PF01385 HCD_01955 HCD_01955 PF07282 HCD_01955 HCD_01955 PF12323 HCD_01955 HCD_01960 PF01797 Transposase IS200 like HCD_01965 PF00145 C-5 cytosine-specific DNA methylase HCD_01970 PF03553 HCD_01970 HCD_01975 PF01042 Endoribonuclease L-PSP HCD_01980 PF01266 FAD dependent oxidoreductase HCD_01985 PF01235 HCD_01985 HCD_01990 PF00842 Alanine racemase, C-terminal domain HCD_01990 PF01168 Alanine racemase, N-terminal domain HCD_01995 PF00497 Bacterial extracellular solute-binding proteins, family 3 HCD_02000 PF00528 Binding-protein-dependent transport system inner membrane component HCD_02005 PF01856 HCD_02005 HCD_02010 PF01856 HCD_02010 HCD_02025 PF02590 Predicted SPOUT methyltransferase HCD_02030 PF01039 Carboxyl transferase domain HCD_02035 PF13114 HCD_02035 HCD_02040 PF02464 Competence-damaged protein HCD_02045 PF13304 AAA domain HCD_02055 PF00145 C-5 cytosine-specific DNA methylase HCD_02060 PF00009 Elongation factor Tu GTP binding domain HCD_02060 PF00679 Elongation factor G C-terminus HCD_02060 PF03144 Elongation factor Tu domain 2 HCD_02060 PF06421 GTP-binding protein LepA C-terminus HCD_02065 PF02779 Transketolase, pyrimidine binding domain HCD_02065 PF02780 Transketolase, C-terminal domain HCD_02065 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HCD_02070 PF02108 HCD_02070 HCD_02075 PF01706 FliG C-terminal domain HCD_02075 PF14841 FliG middle domain HCD_02075 PF14842 FliG N-terminal domain HCD_02080 PF01514 Secretory protein of YscJ/FliF family HCD_02080 PF08345 HCD_02080 HCD_02085 PF01569 PAP2 superfamily HCD_02090 PF00117 Glutamine amidotransferase class-I HCD_02090 PF06418 CTP synthase N-terminus HCD_02095 PF01368 DHH family HCD_02095 PF02272 DHHA1 domain HCD_02100 PF00849 RNA pseudouridylate synthase HCD_02105 PF01420 Type I restriction modification DNA specificity domain HCD_02110 PF02384 N-6 DNA Methylase HCD_02115 PF03652 Uncharacterised protein family (UPF0081) HCD_02120 PF02481 DNA recombination-mediator protein A HCD_02125 PF03776 Septum formation topological specificity factor MinE HCD_02130 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HCD_02135 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HCD_02135 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain HCD_02140 PF02540 NAD synthase HCD_02145 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HCD_02150 PF00583 Acetyltransferase (GNAT) family HCD_02160 PF02348 Cytidylyltransferase HCD_02165 PF02107 HCD_02165 HCD_02170 PF01856 HCD_02170 HCD_02175 PF13091 PLD-like domain HCD_02185 PF00625 Guanylate kinase HCD_02190 PF02416 mttA/Hcf106 family HCD_02195 PF00750 tRNA synthetases class I (R) HCD_02195 PF03485 Arginyl tRNA synthetase N terminal domain HCD_02195 PF05746 DALR anticodon binding domain HCD_02200 PF01243 Pyridoxamine 5'-phosphate oxidase HCD_02200 PF10615 Protein of unknown function (DUF2470) HCD_02215 PF01385 HCD_02215 HCD_02215 PF07282 HCD_02215 HCD_02215 PF12323 HCD_02215 HCD_02220 PF01797 Transposase IS200 like HCD_02225 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HCD_02250 PF10137 HCD_02250 HCD_02270 PF03077 HCD_02270 HCD_02275 PF13664 HCD_02275 HCD_02285 PF00004 ATPase family associated with various cellular activities (AAA) HCD_02290 PF00919 Uncharacterized protein family UPF0004 HCD_02290 PF04055 Radical SAM superfamily HCD_02295 PF00924 Mechanosensitive ion channel HCD_02300 PF01761 3-dehydroquinate synthase HCD_02305 PF02080 TrkA-C domain HCD_02310 PF01702 Queuine tRNA-ribosyltransferase HCD_02315 PF03279 HCD_02315 HCD_02320 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HCD_02325 PF02541 Ppx/GppA phosphatase family HCD_02330 PF13187 4Fe-4S dicluster domain HCD_02335 PF00218 Indole-3-glycerol phosphate synthase HCD_02340 PF01535 PPR repeat HCD_02345 PF03692 HCD_02345 HCD_02365 PF04028 HCD_02365 HCD_02370 PF00919 Uncharacterized protein family UPF0004 HCD_02370 PF04055 Radical SAM superfamily HCD_02380 PF01979 Amidohydrolase family HCD_02385 PF01979 Amidohydrolase family HCD_02390 PF02683 HCD_02390 HCD_02395 PF00004 ATPase family associated with various cellular activities (AAA) HCD_02395 PF02861 Clp amino terminal domain HCD_02395 PF07724 AAA domain (Cdc48 subfamily) HCD_02395 PF10431 C-terminal, D2-small domain, of ClpB protein HCD_02400 PF01555 DNA methylase HCD_02410 PF01385 HCD_02410 HCD_02410 PF07282 HCD_02410 HCD_02410 PF12323 HCD_02410 HCD_02415 PF01797 Transposase IS200 like HCD_02430 PF07804 HipA-like C-terminal domain HCD_02435 PF00589 Phage integrase family HCD_02445 PF03432 HCD_02445 HCD_02470 PF01883 Domain of unknown function DUF59 HCD_02470 PF10609 ParA/MinD ATPase like HCD_02475 PF01797 Transposase IS200 like HCD_02480 PF12323 HCD_02480 HCD_02485 PF07282 HCD_02485 HCD_02490 PF13175 AAA ATPase domain HCD_02500 PF01856 HCD_02500 HCD_02505 PF13649 Methyltransferase domain HCD_02510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HCD_02510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HCD_02515 PF08534 Redoxin HCD_02525 PF01370 NAD dependent epimerase/dehydratase family HCD_02530 PF01416 tRNA pseudouridine synthase HCD_02535 PF03739 HCD_02535 HCD_02540 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HCD_02545 PF00268 Ribonucleotide reductase, small chain HCD_02555 PF02601 HCD_02555 HCD_02555 PF13742 HCD_02555 HCD_02560 PF02163 Peptidase family M50 HCD_02565 PF03448 MgtE intracellular N domain HCD_02570 PF02050 Flagellar FliJ protein HCD_02575 PF00709 Adenylosuccinate synthetase HCD_02580 PF01856 HCD_02580 HCD_02585 PF01856 HCD_02585 HCD_02590 PF00528 Binding-protein-dependent transport system inner membrane component HCD_02590 PF12911 HCD_02590 HCD_02595 PF00005 ABC transporter HCD_02595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HCD_02600 PF05211 Neuraminyllactose-binding hemagglutinin precursor (NLBH) HCD_02605 PF00117 Glutamine amidotransferase class-I HCD_02605 PF00958 GMP synthase C terminal domain HCD_02605 PF02540 NAD synthase HCD_02620 PF00384 Molybdopterin oxidoreductase HCD_02620 PF01568 Molydopterin dinucleotide binding domain HCD_02625 PF13118 HCD_02625 HCD_02630 PF00266 Aminotransferase class-V HCD_02635 PF01230 HIT domain HCD_02640 PF01409 tRNA synthetases class II core domain (F) HCD_02640 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HCD_02645 PF01588 Putative tRNA binding domain HCD_02645 PF03147 Ferredoxin-fold anticodon binding domain HCD_02645 PF03484 tRNA synthetase B5 domain HCD_02650 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HCD_02655 PF02401 LytB protein HCD_02660 PF00575 S1 RNA binding domain HCD_02670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HCD_02670 PF01842 ACT domain HCD_02670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HCD_02675 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HCD_02680 PF01168 Alanine racemase, N-terminal domain HCD_02690 PF00072 Response regulator receiver domain HCD_02690 PF01584 CheW-like domain HCD_02695 PF00072 Response regulator receiver domain HCD_02695 PF01584 CheW-like domain HCD_02695 PF01627 Hpt domain HCD_02695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCD_02695 PF02895 Signal transducing histidine kinase, homodimeric domain HCD_02700 PF01584 CheW-like domain HCD_02705 PF00547 Urease, gamma subunit HCD_02705 PF00699 Urease beta subunit HCD_02710 PF00449 Urease alpha-subunit, N-terminal domain HCD_02710 PF01979 Amidohydrolase family HCD_02715 PF13707 HCD_02715 HCD_02720 PF13304 AAA domain HCD_02730 PF00106 short chain dehydrogenase HCD_02735 PF01856 HCD_02735 HCD_02740 PF01420 Type I restriction modification DNA specificity domain HCD_02745 PF02384 N-6 DNA Methylase HCD_02750 PF01048 Phosphorylase superfamily HCD_02755 PF01676 Metalloenzyme superfamily HCD_02760 PF01773 Na+ dependent nucleoside transporter N-terminus HCD_02760 PF07662 Na+ dependent nucleoside transporter C-terminus HCD_02760 PF07670 Nucleoside recognition HCD_02765 PF07690 Major Facilitator Superfamily HCD_02770 PF01171 PP-loop family HCD_02775 PF00999 Sodium/hydrogen exchanger family HCD_02780 PF01554 MatE HCD_02785 PF00194 Eukaryotic-type carbonic anhydrase HCD_02790 PF00581 Rhodanese-like domain HCD_02795 PF01118 Semialdehyde dehydrogenase, NAD binding domain HCD_02795 PF02774 Semialdehyde dehydrogenase, dimerisation domain HCD_02800 PF03129 Anticodon binding domain HCD_02800 PF13393 Histidyl-tRNA synthetase HCD_02805 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HCD_02810 PF01613 Flavin reductase like domain HCD_02820 PF01385 HCD_02820 HCD_02820 PF07282 HCD_02820 HCD_02820 PF12323 HCD_02820 HCD_02825 PF01797 Transposase IS200 like HCD_02830 PF00271 Helicase conserved C-terminal domain HCD_02830 PF02151 UvrB/uvrC motif HCD_02830 PF04851 Type III restriction enzyme, res subunit HCD_02830 PF12344 Ultra-violet resistance protein B HCD_02855 PF00009 Elongation factor Tu GTP binding domain HCD_02855 PF00679 Elongation factor G C-terminus HCD_02855 PF03144 Elongation factor Tu domain 2 HCD_02855 PF03764 Elongation factor G, domain IV HCD_02855 PF14492 Elongation Factor G, domain II HCD_02860 PF00177 Ribosomal protein S7p/S5e HCD_02865 PF00164 Ribosomal protein S12/S23 HCD_02870 PF00562 RNA polymerase Rpb2, domain 6 HCD_02870 PF00623 RNA polymerase Rpb1, domain 2 HCD_02870 PF04560 RNA polymerase Rpb2, domain 7 HCD_02870 PF04561 RNA polymerase Rpb2, domain 2 HCD_02870 PF04563 RNA polymerase beta subunit HCD_02870 PF04565 RNA polymerase Rpb2, domain 3 HCD_02870 PF04983 RNA polymerase Rpb1, domain 3 HCD_02870 PF04997 RNA polymerase Rpb1, domain 1 HCD_02870 PF04998 RNA polymerase Rpb1, domain 5 HCD_02870 PF05000 RNA polymerase Rpb1, domain 4 HCD_02870 PF10385 RNA polymerase beta subunit external 1 domain HCD_02875 PF00542 Ribosomal protein L7/L12 C-terminal domain HCD_02875 PF16320 HCD_02875 HCD_02880 PF00466 Ribosomal protein L10 HCD_02885 PF00687 Ribosomal protein L1p/L10e family HCD_02890 PF00298 Ribosomal protein L11, RNA binding domain HCD_02890 PF03946 Ribosomal protein L11, N-terminal domain HCD_02895 PF00467 KOW motif HCD_02895 PF02357 Transcription termination factor nusG HCD_02900 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HCD_02905 PF00471 Ribosomal protein L33 HCD_02910 PF00009 Elongation factor Tu GTP binding domain HCD_02910 PF03143 Elongation factor Tu C-terminal domain HCD_02910 PF03144 Elongation factor Tu domain 2 HCD_02915 PF00005 ABC transporter HCD_02930 PF06518 Protein of unknown function (DUF1104) HCD_02935 PF01856 HCD_02935 HCD_02940 PF00137 ATP synthase subunit C HCD_02945 PF00013 KH domain HCD_02945 PF01138 3' exoribonuclease family, domain 1 HCD_02945 PF03725 3' exoribonuclease family, domain 2 HCD_02945 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HCD_02955 PF04453 Organic solvent tolerance protein HCD_02960 PF06271 HCD_02960 HCD_02965 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HCD_02965 PF02843 Phosphoribosylglycinamide synthetase, C domain HCD_02965 PF02844 Phosphoribosylglycinamide synthetase, N domain HCD_02975 PF01385 HCD_02975 HCD_02975 PF07282 HCD_02975 HCD_02975 PF12323 HCD_02975 HCD_02980 PF01797 Transposase IS200 like HCD_02985 PF00589 Phage integrase family HCD_03010 PF08966 Domain of unknown function (DUF1882) HCD_03015 PF00464 Serine hydroxymethyltransferase HCD_03020 PF00152 tRNA synthetases class II (D, K and N) HCD_03020 PF01336 OB-fold nucleic acid binding domain HCD_03025 PF02674 HCD_03025 HCD_03030 PF00795 Carbon-nitrogen hydrolase HCD_03035 PF00005 ABC transporter HCD_03040 PF03102 NeuB family HCD_03040 PF08666 SAF domain HCD_03045 PF01132 Elongation factor P (EF-P) OB domain HCD_03045 PF08207 Elongation factor P (EF-P) KOW-like domain HCD_03045 PF09285 Elongation factor P, C-terminal HCD_03050 PF01116 Fructose-bisphosphate aldolase class-II HCD_03055 PF00639 PPIC-type PPIASE domain HCD_03060 PF07264 Etoposide-induced protein 2 HCD_03065 PF01311 HCD_03065 HCD_03070 PF00994 Probable molybdopterin binding domain HCD_03070 PF03453 MoeA N-terminal region (domain I and II) HCD_03075 PF00472 RF-1 domain HCD_03075 PF03462 PCRF domain HCD_03085 PF01136 HCD_03085 HCD_03100 PF00072 Response regulator receiver domain HCD_03100 PF00486 Transcriptional regulatory protein, C terminal HCD_03110 PF00490 Delta-aminolevulinic acid dehydratase HCD_03115 PF01709 Transcriptional regulator HCD_03120 PF08238 Sel1 repeat HCD_03125 PF01501 Glycosyl transferase family 8 HCD_03130 PF01856 HCD_03130 HCD_03145 PF01202 Shikimate kinase HCD_03150 PF11741 AMIN domain HCD_03160 PF00113 Enolase, C-terminal TIM barrel domain HCD_03160 PF03952 Enolase, N-terminal domain HCD_03165 PF00154 recA bacterial DNA recombination protein HCD_03170 PF02621 Menaquinone biosynthesis HCD_03195 PF13179 HCD_03195 HCD_03200 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HCD_03200 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HCD_03205 PF05545 HCD_03205 HCD_03210 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO HCD_03215 PF00115 Cytochrome C and Quinol oxidase polypeptide I HCD_03220 PF00939 Sodium:sulfate symporter transmembrane region HCD_03225 PF00633 Helix-hairpin-helix motif HCD_03225 PF00730 HhH-GPD superfamily base excision DNA repair protein HCD_03235 PF02652 HCD_03235 HCD_03240 PF02652 HCD_03240 HCD_03245 PF02754 HCD_03245 HCD_03250 PF02589 Uncharacterised ACR, YkgG family COG1556 HCD_03250 PF11870 HCD_03250 HCD_03250 PF13183 4Fe-4S dicluster domain HCD_03255 PF02589 Uncharacterised ACR, YkgG family COG1556 HCD_03260 PF00578 AhpC/TSA family HCD_03275 PF08238 Sel1 repeat HCD_03295 PF02545 Maf-like protein HCD_03300 PF01411 tRNA synthetases class II (A) HCD_03300 PF02272 DHHA1 domain HCD_03300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HCD_03305 PF04325 Protein of unknown function (DUF465) HCD_03330 PF00117 Glutamine amidotransferase class-I HCD_03330 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HCD_03335 PF04368 HCD_03335 HCD_03340 PF13231 HCD_03340 HCD_03345 PF00892 EamA-like transporter family HCD_03360 PF06518 Protein of unknown function (DUF1104) HCD_03365 PF01856 HCD_03365 HCD_03370 PF00453 Ribosomal protein L20 HCD_03375 PF01632 Ribosomal protein L35 HCD_03380 PF00707 Translation initiation factor IF-3, C-terminal domain HCD_03380 PF05198 Translation initiation factor IF-3, N-terminal domain HCD_03385 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HCD_03385 PF03129 Anticodon binding domain HCD_03385 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HCD_03390 PF00391 PEP-utilising enzyme, mobile domain HCD_03390 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HCD_03390 PF02896 PEP-utilising enzyme, TIM barrel domain HCD_03400 PF13729 HCD_03400 HCD_03405 PF01856 HCD_03405 HCD_03410 PF00535 Glycosyl transferase family 2 HCD_03415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_03415 PF17200 HCD_03415 HCD_03420 PF00012 Hsp70 protein HCD_03425 PF01025 GrpE HCD_03435 PF00596 Class II Aldolase and Adducin N-terminal domain HCD_03445 PF01973 HCD_03445 HCD_03450 PF00669 Bacterial flagellin N-terminal helical region HCD_03450 PF00700 Bacterial flagellin C-terminal helical region HCD_03450 PF07196 Flagellin hook IN motif HCD_03455 PF01131 DNA topoisomerase HCD_03455 PF01396 HCD_03455 HCD_03455 PF01751 Toprim domain HCD_03460 PF04055 Radical SAM superfamily HCD_03460 PF13394 4Fe-4S single cluster domain HCD_03465 PF01856 HCD_03465 HCD_03470 PF01856 HCD_03470 HCD_03475 PF02677 HCD_03475 HCD_03480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_03485 PF00291 Pyridoxal-phosphate dependent enzyme HCD_03495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HCD_03495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HCD_03505 PF00698 Acyl transferase domain HCD_03510 PF01048 Phosphorylase superfamily HCD_03515 PF00140 Sigma-70 factor, region 1 HCD_03515 PF04539 Sigma-70 region 3 HCD_03515 PF04542 Sigma-70 region 2 HCD_03515 PF04545 Sigma-70, region 4 HCD_03520 PF00877 NlpC/P60 family HCD_03520 PF12912 NLPC_P60 stabilising domain, N term HCD_03520 PF12913 SH3 domain of the SH3b1 type HCD_03520 PF12914 SH3 domain of SH3b2 type HCD_03525 PF06039 HCD_03525 HCD_03530 PF17402 HCD_03530 HCD_03535 PF00572 Ribosomal protein L13 HCD_03540 PF00380 Ribosomal protein S9/S16 HCD_03545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_03560 PF00472 RF-1 domain HCD_03560 PF03462 PCRF domain HCD_03565 PF01649 Ribosomal protein S20 HCD_03570 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HCD_03570 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HCD_03570 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HCD_03575 PF01252 HCD_03575 HCD_03580 PF00547 Urease, gamma subunit HCD_03580 PF00699 Urease beta subunit HCD_03585 PF00449 Urease alpha-subunit, N-terminal domain HCD_03585 PF01979 Amidohydrolase family HCD_03590 PF02293 AmiS/UreI family transporter HCD_03595 PF02814 UreE urease accessory protein, N-terminal domain HCD_03595 PF05194 UreE urease accessory protein, C-terminal domain HCD_03600 PF01730 UreF HCD_03605 PF02492 CobW/HypB/UreG, nucleotide-binding domain HCD_03610 PF01774 UreD urease accessory protein HCD_03620 PF03264 NapC/NirT cytochrome c family, N-terminal region HCD_03625 PF13435 Cytochrome c554 and c-prime HCD_03625 PF13447 Seven times multi-haem cytochrome CxxCH HCD_03630 PF00171 Aldehyde dehydrogenase family HCD_03630 PF01619 Proline dehydrogenase HCD_03635 PF00474 Sodium:solute symporter family HCD_03640 PF00145 C-5 cytosine-specific DNA methylase HCD_03640 PF07669 Eco57I restriction-modification methylase HCD_03655 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HCD_03660 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HCD_03665 PF00953 Glycosyl transferase family 4 HCD_03670 PF01569 PAP2 superfamily HCD_03685 PF01856 HCD_03685 HCD_03690 PF00528 Binding-protein-dependent transport system inner membrane component HCD_03695 PF00005 ABC transporter HCD_03695 PF09383 NIL domain HCD_03700 PF01312 FlhB HrpN YscU SpaS Family HCD_03705 PF00677 Lumazine binding domain HCD_03710 PF01026 TatD related DNase HCD_03715 PF01464 Transglycosylase SLT domain HCD_03715 PF01476 LysM domain HCD_03720 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel HCD_03720 PF05036 Sporulation related domain HCD_03725 PF08282 haloacid dehalogenase-like hydrolase HCD_03735 PF03968 OstA-like protein HCD_03740 PF01926 50S ribosome-binding GTPase HCD_03750 PF00905 Penicillin binding protein transpeptidase domain HCD_03750 PF03717 Penicillin-binding Protein dimerisation domain HCD_03755 PF03180 NLPA lipoprotein HCD_03760 PF00578 AhpC/TSA family HCD_03760 PF10417 C-terminal domain of 1-Cys peroxiredoxin HCD_03765 PF01497 Periplasmic binding protein HCD_03770 PF01098 HCD_03770 HCD_03775 PF00460 Flagella basal body rod protein HCD_03780 PF00460 Flagella basal body rod protein HCD_03780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HCD_03785 PF02049 HCD_03785 HCD_03790 PF00905 Penicillin binding protein transpeptidase domain HCD_03790 PF03717 Penicillin-binding Protein dimerisation domain HCD_03795 PF04393 HCD_03795 HCD_03800 PF13304 AAA domain HCD_03810 PF12146 Putative lysophospholipase HCD_03815 PF00034 Cytochrome c HCD_03815 PF02167 Cytochrome C1 family HCD_03820 PF00032 Cytochrome b(C-terminal)/b6/petD HCD_03820 PF00033 Cytochrome b(N-terminal)/b6/petB HCD_03825 PF00355 Rieske [2Fe-2S] domain HCD_03830 PF00270 DEAD/DEAH box helicase HCD_03830 PF00271 Helicase conserved C-terminal domain HCD_03830 PF02559 CarD-like/TRCF domain HCD_03830 PF03461 TRCF domain HCD_03835 PF04519 HCD_03835 HCD_03840 PF01551 Peptidase family M23 HCD_03845 PF01551 Peptidase family M23 HCD_03850 PF08245 Mur ligase middle domain HCD_03855 PF04390 Lipopolysaccharide-assembly HCD_03860 PF00133 tRNA synthetases class I (I, L, M and V) HCD_03860 PF09334 tRNA synthetases class I (M) HCD_03860 PF13603 Leucyl-tRNA synthetase, Domain 2 HCD_03870 PF02355 Protein export membrane protein HCD_03870 PF07549 SecD/SecF GG Motif HCD_03875 PF02355 Protein export membrane protein HCD_03880 PF02699 Preprotein translocase subunit HCD_03885 PF06965 Na+/H+ antiporter 1 HCD_03890 PF00580 UvrD/REP helicase N-terminal domain HCD_03890 PF13361 UvrD-like helicase C-terminal domain HCD_03895 PF00318 Ribosomal protein S2 HCD_03900 PF00889 Elongation factor TS HCD_03920 PF02086 D12 class N6 adenine-specific DNA methyltransferase HCD_03925 PF00145 C-5 cytosine-specific DNA methylase HCD_03935 PF02086 D12 class N6 adenine-specific DNA methyltransferase HCD_03940 PF01196 Ribosomal protein L17 HCD_03945 PF01000 RNA polymerase Rpb3/RpoA insert domain HCD_03945 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HCD_03945 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HCD_03950 PF00163 Ribosomal protein S4/S9 N-terminal domain HCD_03950 PF01479 S4 domain HCD_03955 PF00411 Ribosomal protein S11 HCD_03960 PF00416 Ribosomal protein S13/S18 HCD_03965 PF00444 Ribosomal protein L36 HCD_03970 PF01176 Translation initiation factor 1A / IF-1 HCD_03975 PF00557 Metallopeptidase family M24 HCD_03980 PF00344 SecY translocase HCD_03985 PF00828 Ribosomal protein L18e/L15 HCD_03990 PF00333 Ribosomal protein S5, N-terminal domain HCD_03990 PF03719 Ribosomal protein S5, C-terminal domain HCD_03995 PF00861 Ribosomal L18p/L5e family HCD_04000 PF00347 Ribosomal protein L6 HCD_04005 PF00410 Ribosomal protein S8 HCD_04010 PF00253 Ribosomal protein S14p/S29e HCD_04015 PF00281 Ribosomal protein L5 HCD_04015 PF00673 ribosomal L5P family C-terminus HCD_04020 PF00467 KOW motif HCD_04020 PF17136 HCD_04020 HCD_04025 PF00238 Ribosomal protein L14p/L23e HCD_04030 PF00366 Ribosomal protein S17 HCD_04035 PF00831 Ribosomal L29 protein HCD_04040 PF00252 Ribosomal protein L16p/L10e HCD_04045 PF00189 Ribosomal protein S3, C-terminal domain HCD_04045 PF07650 KH domain HCD_04050 PF00237 Ribosomal protein L22p/L17e HCD_04055 PF00203 Ribosomal protein S19 HCD_04060 PF00181 Ribosomal Proteins L2, RNA binding domain HCD_04060 PF03947 Ribosomal Proteins L2, C-terminal domain HCD_04065 PF00276 Ribosomal protein L23 HCD_04070 PF00573 Ribosomal protein L4/L1 family HCD_04075 PF00297 Ribosomal protein L3 HCD_04080 PF00338 Ribosomal protein S10p/S20e HCD_04095 PF01351 Ribonuclease HII HCD_04100 PF00206 Lyase HCD_04100 PF10415 Fumarase C C-terminus HCD_04105 PF13483 Beta-lactamase superfamily domain HCD_04110 PF13115 HCD_04110 HCD_04115 PF02321 Outer membrane efflux protein HCD_04120 PF16576 HCD_04120 HCD_04125 PF00873 AcrB/AcrD/AcrF family HCD_04130 PF02384 N-6 DNA Methylase HCD_04130 PF12161 HsdM N-terminal domain HCD_04135 PF15738 HCD_04135 HCD_04140 PF04221 RelB antitoxin HCD_04145 PF01420 Type I restriction modification DNA specificity domain HCD_04150 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HCD_04150 PF04851 Type III restriction enzyme, res subunit HCD_04155 PF01863 Protein of unknown function DUF45 HCD_04160 PF00072 Response regulator receiver domain HCD_04160 PF00486 Transcriptional regulatory protein, C terminal HCD_04165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCD_04170 PF01256 Carbohydrate kinase HCD_04170 PF03853 YjeF-related protein N-terminus HCD_04175 PF01420 Type I restriction modification DNA specificity domain HCD_04180 PF00772 DnaB-like helicase N terminal domain HCD_04180 PF03796 DnaB-like helicase C terminal domain HCD_04185 PF03772 HCD_04185 HCD_04190 PF04367 HCD_04190 HCD_04195 PF01040 UbiA prenyltransferase family HCD_04210 PF02666 HCD_04210 HCD_04215 PF02445 Quinolinate synthetase A protein HCD_04220 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HCD_04220 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HCD_04230 PF01555 DNA methylase HCD_04245 PF03572 Peptidase family S41 HCD_04245 PF13180 PDZ domain HCD_04255 PF01553 Acyltransferase HCD_04260 PF03167 Uracil DNA glycosylase superfamily HCD_04265 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HCD_04265 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HCD_04270 PF00162 Phosphoglycerate kinase HCD_04275 PF01544 CorA-like Mg2+ transporter protein HCD_04280 PF03741 HCD_04280 HCD_04300 PF02384 N-6 DNA Methylase HCD_04300 PF08774 VRR-NUC domain HCD_04310 PF02223 Thymidylate kinase HCD_04315 PF01467 Cytidylyltransferase HCD_04320 PF02441 Flavoprotein HCD_04325 PF13144 SAF-like HCD_04330 PF00580 UvrD/REP helicase N-terminal domain HCD_04330 PF13361 UvrD-like helicase C-terminal domain HCD_04335 PF13174 Tetratricopeptide repeat HCD_04335 PF13181 Tetratricopeptide repeat HCD_04340 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HCD_04340 PF02403 Seryl-tRNA synthetase N-terminal domain HCD_04345 PF00795 Carbon-nitrogen hydrolase HCD_04350 PF02609 Exonuclease VII small subunit HCD_04355 PF01209 ubiE/COQ5 methyltransferase family HCD_04360 PF03653 HCD_04360 HCD_04365 PF01205 Uncharacterized protein family UPF0029 HCD_04370 PF12698 ABC-2 family transporter protein HCD_04375 PF12698 ABC-2 family transporter protein HCD_04380 PF16576 HCD_04380 HCD_04385 PF02321 Outer membrane efflux protein HCD_04390 PF00571 CBS domain HCD_04390 PF01595 HCD_04390 HCD_04390 PF03471 Transporter associated domain HCD_04395 PF01384 HCD_04395 HCD_04400 PF01106 NifU-like domain HCD_04410 PF02875 Mur ligase family, glutamate ligase domain HCD_04410 PF08245 Mur ligase middle domain HCD_04415 PF00923 Transaldolase HCD_04420 PF01386 Ribosomal L25p family HCD_04420 PF14693 Ribosomal protein TL5, C-terminal domain HCD_04425 PF01195 Peptidyl-tRNA hydrolase HCD_04435 PF03739 HCD_04435 HCD_04440 PF04393 HCD_04440 HCD_04445 PF07598 HCD_04445 HCD_04450 PF00145 C-5 cytosine-specific DNA methylase HCD_04465 PF01856 HCD_04465 HCD_04475 PF00122 E1-E2 ATPase HCD_04475 PF00403 Heavy-metal-associated domain HCD_04475 PF00702 haloacid dehalogenase-like hydrolase HCD_04475 PF12156 HCD_04475 HCD_04480 PF05175 Methyltransferase small domain HCD_04485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HCD_04490 PF03616 HCD_04490 HCD_04495 PF03435 Saccharopine dehydrogenase HCD_04495 PF16653 HCD_04495 HCD_04500 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HCD_04500 PF12801 HCD_04500 HCD_04500 PF13746 4Fe-4S dicluster domain HCD_04505 PF02660 HCD_04505 HCD_04510 PF02152 Dihydroneopterin aldolase HCD_04520 PF00593 TonB dependent receptor HCD_04520 PF07715 TonB-dependent Receptor Plug Domain HCD_04530 PF03841 L-seryl-tRNA selenium transferase HCD_04535 PF08529 NusA N-terminal domain HCD_04535 PF13184 NusA-like KH domain HCD_04540 PF01555 DNA methylase HCD_04565 PF04851 Type III restriction enzyme, res subunit HCD_04570 PF01555 DNA methylase HCD_04575 PF00271 Helicase conserved C-terminal domain HCD_04575 PF04851 Type III restriction enzyme, res subunit HCD_04585 PF01856 HCD_04585 HCD_04590 PF03372 Endonuclease/Exonuclease/phosphatase family HCD_04605 PF00308 Bacterial dnaA protein HCD_04605 PF08299 Bacterial dnaA protein helix-turn-helix HCD_04605 PF11638 DnaA N-terminal domain HCD_04620 PF10398 Protein of unknown function (DUF2443) HCD_04625 PF01380 SIS domain HCD_04625 PF13522 Glutamine amidotransferase domain HCD_04635 PF13245 Part of AAA domain HCD_04635 PF13361 UvrD-like helicase C-terminal domain HCD_04640 PF02511 Thymidylate synthase complementing protein HCD_04650 PF08937 MTH538 TIR-like domain (DUF1863) HCD_04655 PF01555 DNA methylase HCD_04660 PF04851 Type III restriction enzyme, res subunit HCD_04665 PF00476 DNA polymerase family A HCD_04665 PF01367 5'-3' exonuclease, C-terminal SAM fold HCD_04665 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HCD_04670 PF01856 HCD_04670 HCD_04675 PF01063 Aminotransferase class IV HCD_04700 PF00316 Fructose-1-6-bisphosphatase HCD_04705 PF00834 Ribulose-phosphate 3 epimerase family HCD_04710 PF00929 Exonuclease HCD_04720 PF05670 HCD_04720 HCD_04730 PF01513 ATP-NAD kinase HCD_04735 PF01856 HCD_04735 HCD_04740 PF03235 HCD_04740 HCD_04740 PF07510 HCD_04740 HCD_04745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_04745 PF02743 Cache domain HCD_04750 PF00107 Zinc-binding dehydrogenase HCD_04750 PF08240 Alcohol dehydrogenase GroES-like domain HCD_04755 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HCD_04755 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HCD_04760 PF00324 Amino acid permease HCD_04765 PF00491 Arginase family HCD_04770 PF01856 HCD_04770 HCD_04775 PF00390 Malic enzyme, N-terminal domain HCD_04775 PF03949 Malic enzyme, NAD binding domain HCD_04780 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HCD_04780 PF04851 Type III restriction enzyme, res subunit HCD_04785 PF01420 Type I restriction modification DNA specificity domain HCD_04790 PF02384 N-6 DNA Methylase HCD_04795 PF02153 Prephenate dehydrogenase HCD_04800 PF00004 ATPase family associated with various cellular activities (AAA) HCD_04800 PF02190 ATP-dependent protease La (LON) domain HCD_04800 PF05362 Lon protease (S16) C-terminal proteolytic domain HCD_04805 PF13525 Outer membrane lipoprotein HCD_04810 PF02623 FliW protein HCD_04815 PF07977 FabA-like domain HCD_04820 PF00132 Bacterial transferase hexapeptide (six repeats) HCD_04820 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HCD_04825 PF06689 ClpX C4-type zinc finger HCD_04825 PF07724 AAA domain (Cdc48 subfamily) HCD_04825 PF10431 C-terminal, D2-small domain, of ClpB protein HCD_04830 PF06723 MreB/Mbl protein HCD_04835 PF04085 rod shape-determining protein MreC HCD_04850 PF05437 HCD_04850 HCD_04855 PF03591 HCD_04855 HCD_04860 PF00226 DnaJ domain HCD_04860 PF00684 DnaJ central domain HCD_04860 PF01556 DnaJ C terminal domain HCD_04870 PF03054 tRNA methyl transferase HCD_04875 PF00226 DnaJ domain HCD_04880 PF01467 Cytidylyltransferase HCD_04885 PF01402 Ribbon-helix-helix protein, copG family HCD_04885 PF08753 NikR C terminal nickel binding domain HCD_04890 PF01618 HCD_04890 HCD_04895 PF02472 Biopolymer transport protein ExbD/TolR HCD_04900 PF03544 Gram-negative bacterial TonB protein C-terminal HCD_04920 PF04055 Radical SAM superfamily HCD_04920 PF06968 Biotin and Thiamin Synthesis associated domain HCD_04925 PF03631 HCD_04925 HCD_04930 PF01856 HCD_04930 HCD_04935 PF02405 HCD_04935 HCD_04940 PF00005 ABC transporter HCD_04945 PF02470 HCD_04945 HCD_04955 PF03724 META domain HCD_04960 PF04393 HCD_04960 HCD_04965 PF00034 Cytochrome c HCD_04965 PF03150 Di-haem cytochrome c peroxidase HCD_04970 PF02811 PHP domain HCD_04970 PF07733 Bacterial DNA polymerase III alpha subunit HCD_04970 PF14579 Helix-hairpin-helix motif HCD_04975 PF00849 RNA pseudouridylate synthase HCD_04975 PF01479 S4 domain HCD_04980 PF12033 HCD_04980 HCD_05025 PF13252 HCD_05025 HCD_05050 PF05973 HCD_05050 HCD_05070 PF00771 FHIPEP family HCD_05080 PF00072 Response regulator receiver domain HCD_05080 PF00486 Transcriptional regulatory protein, C terminal HCD_05085 PF00149 Calcineurin-like phosphoesterase HCD_05090 PF09491 AlwI restriction endonuclease HCD_05095 PF06300 HCD_05095 HCD_05100 PF00589 Phage integrase family HCD_05105 PF01797 Transposase IS200 like HCD_05110 PF01385 HCD_05110 HCD_05110 PF07282 HCD_05110 HCD_05110 PF12323 HCD_05110 HCD_05125 PF00072 Response regulator receiver domain HCD_05125 PF00158 Sigma-54 interaction domain HCD_05135 PF00521 DNA gyrase/topoisomerase IV, subunit A HCD_05135 PF03989 DNA gyrase C-terminal domain, beta-propeller HCD_05140 PF01219 Prokaryotic diacylglycerol kinase HCD_05150 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) HCD_05155 PF01385 HCD_05155 HCD_05155 PF07282 HCD_05155 HCD_05155 PF12323 HCD_05155 HCD_05160 PF01797 Transposase IS200 like HCD_05165 PF09564 HCD_05165 HCD_05170 PF00145 C-5 cytosine-specific DNA methylase HCD_05175 PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HCD_05180 PF02421 Ferrous iron transport protein B HCD_05180 PF07664 HCD_05180 HCD_05180 PF07670 Nucleoside recognition HCD_05185 PF01385 HCD_05185 HCD_05185 PF07282 HCD_05185 HCD_05185 PF12323 HCD_05185 HCD_05190 PF01797 Transposase IS200 like HCD_05195 PF01501 Glycosyl transferase family 8 HCD_05205 PF00813 HCD_05205 HCD_05210 PF00132 Bacterial transferase hexapeptide (six repeats) HCD_05210 PF12804 MobA-like NTP transferase domain HCD_05215 PF00317 Ribonucleotide reductase, all-alpha domain HCD_05215 PF02867 Ribonucleotide reductase, barrel domain HCD_05215 PF03477 ATP cone domain HCD_05220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HCD_05220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HCD_05225 PF01925 HCD_05225 HCD_05230 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HCD_05230 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HCD_05235 PF02384 N-6 DNA Methylase HCD_05240 PF00589 Phage integrase family HCD_05245 PF00155 Aminotransferase class I and II HCD_05250 PF01856 HCD_05250 HCD_05255 PF02754 HCD_05255 HCD_05255 PF13183 4Fe-4S dicluster domain HCD_05260 PF04055 Radical SAM superfamily HCD_05260 PF06969 HemN C-terminal domain HCD_05265 PF10788 HCD_05265 HCD_05270 PF01264 Chorismate synthase HCD_05275 PF00035 Double-stranded RNA binding motif HCD_05275 PF14622 Ribonuclease-III-like HCD_05280 PF00075 RNase H HCD_05290 PF09312 SurA N-terminal domain HCD_05295 PF02637 GatB domain HCD_05295 PF02934 GatB/GatE catalytic domain HCD_05300 PF00675 Insulinase (Peptidase family M16) HCD_05300 PF05193 Peptidase M16 inactive domain HCD_05305 PF04055 Radical SAM superfamily HCD_05310 PF01103 Surface antigen HCD_05310 PF07244 Surface antigen variable number repeat HCD_05315 PF04055 Radical SAM superfamily HCD_05330 PF00719 Inorganic pyrophosphatase HCD_05340 PF01755 HCD_05340 HCD_05345 PF01755 HCD_05345 HCD_05350 PF01755 HCD_05350 HCD_05355 PF00406 Adenylate kinase HCD_05360 PF00152 tRNA synthetases class II (D, K and N) HCD_05360 PF01336 OB-fold nucleic acid binding domain HCD_05360 PF02938 GAD domain HCD_05365 PF00072 Response regulator receiver domain HCD_05365 PF01584 CheW-like domain HCD_05370 PF00533 BRCA1 C Terminus (BRCT) domain HCD_05370 PF01653 NAD-dependent DNA ligase adenylation domain HCD_05370 PF03120 NAD-dependent DNA ligase OB-fold domain HCD_05370 PF12826 Helix-hairpin-helix motif HCD_05375 PF12837 4Fe-4S binding domain HCD_05390 PF00384 Molybdopterin oxidoreductase HCD_05390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HCD_05395 PF00384 Molybdopterin oxidoreductase HCD_05395 PF01568 Molydopterin dinucleotide binding domain HCD_05400 PF13247 4Fe-4S dicluster domain HCD_05405 PF01292 Prokaryotic cytochrome b561 HCD_05420 PF00588 SpoU rRNA Methylase family HCD_05420 PF08032 RNA 2'-O ribose methyltransferase substrate binding HCD_05425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HCD_05430 PF01197 Ribosomal protein L31 HCD_05435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HCD_05435 PF07497 Rho termination factor, RNA-binding domain HCD_05435 PF07498 Rho termination factor, N-terminal domain HCD_05440 PF01177 Asp/Glu/Hydantoin racemase HCD_05445 PF03734 L,D-transpeptidase catalytic domain HCD_05450 PF01926 50S ribosome-binding GTPase HCD_05450 PF07650 KH domain HCD_05455 PF07724 AAA domain (Cdc48 subfamily) HCD_05455 PF10431 C-terminal, D2-small domain, of ClpB protein HCD_05460 PF00227 Proteasome subunit HCD_05465 PF01281 Ribosomal protein L9, N-terminal domain HCD_05465 PF03948 Ribosomal protein L9, C-terminal domain HCD_05470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HCD_05470 PF17200 HCD_05470 HCD_05475 PF00120 Glutamine synthetase, catalytic domain HCD_05475 PF03951 Glutamine synthetase, beta-Grasp domain HCD_05485 PF01856 HCD_05485 HCD_05490 PF03077 HCD_05490 HCD_05495 PF01113 Dihydrodipicolinate reductase, N-terminus HCD_05495 PF05173 Dihydrodipicolinate reductase, C-terminus HCD_05500 PF13391 HCD_05500 HCD_05510 PF00145 C-5 cytosine-specific DNA methylase HCD_05515 PF01565 FAD binding domain HCD_05515 PF02913 FAD linked oxidases, C-terminal domain HCD_05520 PF15436 HCD_05520 HCD_05520 PF15437 HCD_05520 HCD_05530 PF01551 Peptidase family M23 HCD_05535 PF00586 AIR synthase related protein, N-terminal domain HCD_05535 PF02769 AIR synthase related protein, C-terminal domain HCD_05545 PF02521 HCD_05545 HCD_05555 PF03548 Outer membrane lipoprotein carrier protein LolA HCD_05560 PF00271 Helicase conserved C-terminal domain HCD_05560 PF01043 SecA preprotein cross-linking domain HCD_05560 PF02810 SEC-C motif HCD_05560 PF07516 SecA Wing and Scaffold domain HCD_05560 PF07517 SecA DEAD-like domain HCD_05565 PF02687 HCD_05565 HCD_05565 PF12704 MacB-like periplasmic core domain HCD_05570 PF02521 HCD_05570 HCD_05580 PF01856 HCD_05580 HCD_05590 PF00122 E1-E2 ATPase HCD_05590 PF00403 Heavy-metal-associated domain HCD_05590 PF00702 haloacid dehalogenase-like hydrolase HCD_05595 PF01078 Magnesium chelatase, subunit ChlI HCD_05595 PF13335 HCD_05595 HCD_05595 PF13541 Subunit ChlI of Mg-chelatase HCD_05600 PF01327 Polypeptide deformylase HCD_05605 PF00574 Clp protease HCD_05610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HCD_05610 PF05697 Bacterial trigger factor protein (TF) HCD_05610 PF05698 Bacterial trigger factor protein (TF) C-terminus HCD_05615 PF03927 NapD protein HCD_05620 PF12801 HCD_05620 HCD_05620 PF13237 4Fe-4S dicluster domain HCD_05625 PF12838 4Fe-4S dicluster domain HCD_05630 PF00384 Molybdopterin oxidoreductase HCD_05630 PF01568 Molydopterin dinucleotide binding domain HCD_05630 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HCD_05635 PF05211 Neuraminyllactose-binding hemagglutinin precursor (NLBH) HCD_05640 PF01967 MoaC family HCD_05645 PF00994 Probable molybdopterin binding domain HCD_05650 PF02391 MoaE protein HCD_05655 PF02597 ThiS family HCD_05660 PF00994 Probable molybdopterin binding domain HCD_05660 PF03453 MoeA N-terminal region (domain I and II) HCD_05665 PF00925 GTP cyclohydrolase II HCD_05670 PF13084 HCD_05670 HCD_05675 PF00925 GTP cyclohydrolase II HCD_05675 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HCD_05680 PF13531 Bacterial extracellular solute-binding protein HCD_05685 PF00528 Binding-protein-dependent transport system inner membrane component HCD_05690 PF00005 ABC transporter HCD_05695 PF01755 HCD_05695 HCD_05700 PF01863 Protein of unknown function DUF45 HCD_05705 PF08238 Sel1 repeat HCD_05710 PF14602 Hexapeptide repeat of succinyl-transferase HCD_05710 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HCD_05710 PF14790 Tetrahydrodipicolinate N-succinyltransferase N-terminal HCD_05715 PF04551 GcpE protein HCD_05720 PF00155 Aminotransferase class I and II HCD_05725 PF01225 Mur ligase family, catalytic domain HCD_05725 PF02875 Mur ligase family, glutamate ligase domain HCD_05725 PF08245 Mur ligase middle domain HCD_05735 PF00488 MutS domain V HCD_05735 PF01713 Smr domain HCD_05740 PF01755 HCD_05740 HCD_05745 PF07992 Pyridine nucleotide-disulphide oxidoreductase HCD_05750 PF00085 Thioredoxin HCD_05755 PF02021 Uncharacterised protein family UPF0102 HCD_05760 PF00742 Homoserine dehydrogenase HCD_05760 PF01842 ACT domain HCD_05760 PF03447 Homoserine dehydrogenase, NAD binding domain HCD_05765 PF01541 GIY-YIG catalytic domain HCD_05765 PF02151 UvrB/uvrC motif HCD_05765 PF08459 UvrC Helix-hairpin-helix N-terminal HCD_05775 PF00005 ABC transporter HCD_05780 PF00528 Binding-protein-dependent transport system inner membrane component HCD_05780 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HCD_05785 PF01856 HCD_05785 HCD_05790 PF01856 HCD_05790 HCD_05805 PF00691 OmpA family HCD_05805 PF13677 HCD_05805 HCD_05810 PF01618 HCD_05810 HCD_05815 PF00899 ThiF family HCD_05820 PF00753 Metallo-beta-lactamase superfamily HCD_05825 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase HCD_05830 PF02521 HCD_05830 HCD_05835 PF02521 HCD_05835 HCD_05840 PF02521 HCD_05840 HCD_05845 PF02521 HCD_05845 HCD_05850 PF02521 HCD_05850 HCD_05855 PF00593 TonB dependent receptor HCD_05855 PF07715 TonB-dependent Receptor Plug Domain HCD_05865 PF02142 MGS-like domain HCD_05865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HCD_05865 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HCD_05870 PF01027 Inhibitor of apoptosis-promoting Bax1 HCD_05875 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HCD_05875 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HCD_05885 PF03077 HCD_05885 HCD_05890 PF01361 Tautomerase enzyme HCD_05895 PF02132 RecR protein HCD_05900 PF01142 tRNA pseudouridine synthase D (TruD) HCD_05905 PF01435 Peptidase family M48 HCD_05910 PF01227 GTP cyclohydrolase I HCD_05915 PF00348 Polyprenyl synthetase HCD_05920 PF01975 Survival protein SurE HCD_05930 PF01242 6-pyruvoyl tetrahydropterin synthase HCD_05935 PF13353 4Fe-4S single cluster domain HCD_05940 PF03235 HCD_05940 HCD_05945 PF00009 Elongation factor Tu GTP binding domain HCD_05945 PF00679 Elongation factor G C-terminus HCD_05945 PF03144 Elongation factor Tu domain 2 HCD_05955 PF02384 N-6 DNA Methylase HCD_05955 PF12950 TaqI-like C-terminal specificity domain HCD_05960 PF01856 HCD_05960 HCD_05965 PF00749 tRNA synthetases class I (E and Q), catalytic domain HCD_05970 PF01856 HCD_05970 HCD_05975 PF00999 Sodium/hydrogen exchanger family HCD_05980 PF01432 Peptidase family M3 HCD_05980 PF08439 Oligopeptidase F HCD_06000 PF05099 Tellurite resistance protein TerB HCD_06015 PF01973 HCD_06015 HCD_06020 PF02503 Polyphosphate kinase middle domain HCD_06020 PF13089 Polyphosphate kinase N-terminal domain HCD_06020 PF13090 Polyphosphate kinase C-terminal domain HCD_06025 PF01180 Dihydroorotate dehydrogenase HCD_06030 PF00675 Insulinase (Peptidase family M16) HCD_06030 PF05193 Peptidase M16 inactive domain HCD_06035 PF00701 Dihydrodipicolinate synthetase family HCD_06040 PF13561 Enoyl-(Acyl carrier protein) reductase HCD_06050 PF01066 CDP-alcohol phosphatidyltransferase HCD_06055 PF00324 Amino acid permease HCD_06060 PF13180 PDZ domain HCD_06060 PF13365 Trypsin-like peptidase domain HCD_06065 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HCD_06065 PF02542 YgbB family HCD_06070 PF00072 Response regulator receiver domain HCD_06075 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HCD_06085 PF00226 DnaJ domain HCD_06085 PF01556 DnaJ C terminal domain HCD_06090 PF13411 MerR HTH family regulatory protein HCD_06095 PF05496 Holliday junction DNA helicase ruvB N-terminus HCD_06095 PF12002 MgsA AAA+ ATPase C terminal HCD_06095 PF16193 HCD_06095 HCD_06100 PF01475 Ferric uptake regulator family HCD_06105 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) HCD_06110 PF04074 Domain of unknown function (DUF386) HCD_06115 PF01052 Surface presentation of antigens (SPOA) HCD_06120 PF01052 Surface presentation of antigens (SPOA) HCD_06120 PF02154 Flagellar motor switch protein FliM HCD_06125 PF04542 Sigma-70 region 2 HCD_06125 PF04545 Sigma-70, region 4 HCD_06135 PF10609 ParA/MinD ATPase like HCD_06140 PF00448 SRP54-type protein, GTPase domain HCD_06145 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HCD_06150 PF00557 Metallopeptidase family M24 HCD_06150 PF01321 Creatinase/Prolidase N-terminal domain HCD_06155 PF01220 Dehydroquinase class II HCD_06160 PF04932 HCD_06160 HCD_06165 PF00312 Ribosomal protein S15 HCD_06175 PF13155 Toprim-like HCD_06180 PF01385 HCD_06180 HCD_06180 PF07282 HCD_06180 HCD_06180 PF12323 HCD_06180 HCD_06185 PF01797 Transposase IS200 like HCD_06195 PF08238 Sel1 repeat HCD_06195 PF13176 Tetratricopeptide repeat HCD_06195 PF13181 Tetratricopeptide repeat HCD_06205 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HCD_06205 PF03900 Porphobilinogen deaminase, C-terminal domain HCD_06210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HCD_06210 PF03129 Anticodon binding domain HCD_06210 PF04073 Aminoacyl-tRNA editing domain HCD_06215 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HCD_06215 PF01488 Shikimate / quinate 5-dehydrogenase HCD_06215 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HCD_06220 PF00348 Polyprenyl synthetase HCD_06230 PF09442 Domain of unknown function (DUF2018) HCD_06235 PF00210 Ferritin-like domain HCD_06240 PF00512 His Kinase A (phospho-acceptor) domain HCD_06240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCD_06245 PF10135 HCD_06245 HCD_06250 PF02119 HCD_06250 HCD_06255 PF00270 DEAD/DEAH box helicase HCD_06255 PF00271 Helicase conserved C-terminal domain HCD_06260 PF01145 SPFH domain / Band 7 family HCD_06265 PF09624 HCD_06265 HCD_06270 PF01925 HCD_06270 HCD_06275 PF03432 HCD_06275 HCD_06280 PF13391 HCD_06280 HCD_06290 PF00145 C-5 cytosine-specific DNA methylase HCD_06300 PF00902 Sec-independent protein translocase protein (TatC) HCD_06305 PF02547 Queuosine biosynthesis protein HCD_06310 PF02527 rRNA small subunit methyltransferase G HCD_06325 PF01856 HCD_06325 HCD_06330 PF00072 Response regulator receiver domain HCD_06335 PF06325 Ribosomal protein L11 methyltransferase (PrmA) HCD_06340 PF00004 ATPase family associated with various cellular activities (AAA) HCD_06340 PF01434 Peptidase family M41 HCD_06350 PF01066 CDP-alcohol phosphatidyltransferase HCD_06355 PF00122 E1-E2 ATPase HCD_06355 PF00403 Heavy-metal-associated domain HCD_06355 PF00702 haloacid dehalogenase-like hydrolase HCD_06360 PF00403 Heavy-metal-associated domain HCD_06365 PF00403 Heavy-metal-associated domain HCD_06370 PF08238 Sel1 repeat HCD_06385 PF17033 HCD_06385 HCD_06385 PF17129 HCD_06385 HCD_06385 PF17130 HCD_06385 HCD_06390 PF16522 HCD_06390 HCD_06395 PF03824 HCD_06395 HCD_06400 PF08238 Sel1 repeat HCD_06405 PF04471 Restriction endonuclease HCD_06415 PF00005 ABC transporter HCD_06415 PF00664 ABC transporter transmembrane region HCD_06420 PF02521 HCD_06420 HCD_06425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HCD_06425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HCD_06435 PF01479 S4 domain HCD_06435 PF01728 FtsJ-like methyltransferase HCD_06440 PF01687 Riboflavin kinase HCD_06440 PF06574 FAD synthetase HCD_06445 PF00456 Transketolase, thiamine diphosphate binding domain HCD_06445 PF02779 Transketolase, pyrimidine binding domain HCD_06445 PF02780 Transketolase, C-terminal domain HCD_06450 PF12705 PD-(D/E)XK nuclease superfamily HCD_06455 PF01580 FtsK/SpoIIIE family HCD_06455 PF09397 Ftsk gamma domain HCD_06460 PF07690 Major Facilitator Superfamily HCD_06465 PF00460 Flagella basal body rod protein HCD_06465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HCD_06475 PF00881 Nitroreductase family HCD_06480 PF01790 HCD_06480 HCD_06485 PF00849 RNA pseudouridylate synthase HCD_06490 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HCD_06495 PF02591 Putative zinc ribbon domain HCD_06500 PF01784 NIF3 (NGG1p interacting factor 3) HCD_06505 PF02091 Glycyl-tRNA synthetase alpha subunit HCD_06510 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HCD_06510 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HCD_06515 PF01856 HCD_06515 HCD_06525 PF03432 HCD_06525 HCD_06535 PF00589 Phage integrase family HCD_06540 PF08843 Nucleotidyl transferase of unknown function (DUF1814) HCD_06555 PF02661 Fic/DOC family HCD_06565 PF07669 Eco57I restriction-modification methylase HCD_06570 PF00872 HCD_06570 HCD_06575 PF00872 HCD_06575 HCD_06580 PF01856 HCD_06580 HCD_06590 PF01924 Hydrogenase formation hypA family HCD_06595 PF01455 HupF/HypC family HCD_06600 PF02492 CobW/HypB/UreG, nucleotide-binding domain HCD_06610 PF00871 Acetokinase family HCD_06615 PF01515 Phosphate acetyl/butaryl transferase HCD_06620 PF02120 Flagellar hook-length control protein FliK HCD_06625 PF03963 HCD_06625 HCD_06625 PF13860 FlgD Ig-like domain HCD_06630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HCD_06630 PF07559 Flagellar basal body protein FlaE HCD_06660 PF00005 ABC transporter HCD_06665 PF01032 FecCD transport family HCD_06670 PF00106 short chain dehydrogenase HCD_06675 PF03061 Thioesterase superfamily HCD_06680 PF00593 TonB dependent receptor HCD_06680 PF07715 TonB-dependent Receptor Plug Domain HCD_06685 PF11582 Protein of unknown function (DUF3240) HCD_06690 PF00873 AcrB/AcrD/AcrF family HCD_06700 PF02321 Outer membrane efflux protein HCD_06705 PF02092 HCD_06705 HCD_06715 PF01676 Metalloenzyme superfamily HCD_06715 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HCD_06720 PF02686 Glu-tRNAGln amidotransferase C subunit HCD_06725 PF00210 Ferritin-like domain HCD_06730 PF00702 haloacid dehalogenase-like hydrolase HCD_06740 PF00852 Glycosyltransferase family 10 (fucosyltransferase) HCD_06745 PF03167 Uracil DNA glycosylase superfamily HCD_06750 PF00206 Lyase HCD_06750 PF10415 Fumarase C C-terminus HCD_06755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HCD_06765 PF00483 Nucleotidyl transferase HCD_06770 PF01464 Transglycosylase SLT domain HCD_06775 PF02325 HCD_06775 HCD_06780 PF00749 tRNA synthetases class I (E and Q), catalytic domain HCD_06785 PF01171 PP-loop family HCD_06790 PF00919 Uncharacterized protein family UPF0004 HCD_06790 PF04055 Radical SAM superfamily HCD_06795 PF00156 Phosphoribosyl transferase domain HCD_06800 PF00266 Aminotransferase class-V HCD_06805 PF04608 Phosphatidylglycerophosphatase A HCD_06810 PF01820 D-ala D-ala ligase N-terminus HCD_06810 PF07478 D-ala D-ala ligase C-terminus HCD_06815 PF12697 Alpha/beta hydrolase family HCD_06820 PF08245 Mur ligase middle domain HCD_06825 PF01230 HIT domain HCD_06830 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HCD_06830 PF14572 Phosphoribosyl synthetase-associated domain HCD_06835 PF01098 HCD_06835 HCD_06840 PF00849 RNA pseudouridylate synthase HCD_06850 PF02390 Putative methyltransferase HCD_06855 PF00005 ABC transporter HCD_06865 PF01551 Peptidase family M23 HCD_06870 PF01554 MatE HCD_06875 PF03553 HCD_06875 HCD_06875 PF13726 HCD_06875 HCD_06880 PF00795 Carbon-nitrogen hydrolase HCD_06885 PF00899 ThiF family HCD_06895 PF02561 Flagellar protein FliS HCD_06900 PF02465 HCD_06900 HCD_06900 PF07195 HCD_06900 HCD_06905 PF03646 FlaG protein HCD_06910 PF00013 KH domain HCD_06910 PF01966 HD domain HCD_06915 PF01812 5-formyltetrahydrofolate cyclo-ligase family HCD_06925 PF00448 SRP54-type protein, GTPase domain HCD_06940 PF04055 Radical SAM superfamily HCD_06940 PF06463 Molybdenum Cofactor Synthesis C HCD_06940 PF13353 4Fe-4S single cluster domain HCD_06945 PF12804 MobA-like NTP transferase domain HCD_06950 PF01312 FlhB HrpN YscU SpaS Family HCD_06955 PF00330 Aconitase family (aconitate hydratase) HCD_06955 PF06434 Aconitate hydratase 2 N-terminus HCD_06955 PF11791 Aconitate B N-terminal domain HCD_06960 PF02621 Menaquinone biosynthesis HCD_06965 PF01856 HCD_06965 HCD_06980 PF01520 N-acetylmuramoyl-L-alanine amidase HCD_06985 PF03060 Nitronate monooxygenase HCD_06990 PF00579 tRNA synthetases class I (W and Y) HCD_06990 PF01479 S4 domain HCD_06995 PF02824 TGS domain HCD_06995 PF04607 Region found in RelA / SpoT proteins HCD_06995 PF13328 HD domain HCD_07000 PF01192 RNA polymerase Rpb6 HCD_07005 PF00696 Amino acid kinase family HCD_07010 PF00202 Aminotransferase class-III HCD_07015 PF13145 PPIC-type PPIASE domain HCD_07015 PF13624 SurA N-terminal domain HCD_07020 PF02491 SHS2 domain inserted in FTSA HCD_07020 PF14450 Cell division protein FtsA HCD_07025 PF00091 Tubulin/FtsZ family, GTPase domain HCD_07025 PF12327 FtsZ family, C-terminal domain HCD_07065 PF00425 chorismate binding enzyme HCD_07065 PF01063 Aminotransferase class IV HCD_07070 PF09924 Uncharacterized conserved protein (DUF2156) HCD_07075 PF01817 Chorismate mutase type II HCD_07080 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HCD_07080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HCD_07095 PF16357 HCD_07095 HCD_07100 PF03738 Glutathionylspermidine synthase preATP-grasp HCD_07115 PF02348 Cytidylyltransferase HCD_07120 PF00916 HCD_07120 HCD_07125 PF01856 HCD_07125 HCD_07130 PF01361 Tautomerase enzyme HCD_07135 PF00009 Elongation factor Tu GTP binding domain HCD_07135 PF03144 Elongation factor Tu domain 2 HCD_07135 PF09107 Elongation factor SelB, winged helix HCD_07145 PF09527 HCD_07145 HCD_07150 PF00202 Aminotransferase class-III HCD_07160 PF01018 GTP1/OBG HCD_07160 PF01926 50S ribosome-binding GTPase HCD_07165 PF00005 ABC transporter HCD_07165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HCD_07170 PF00005 ABC transporter HCD_07170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HCD_07175 PF00528 Binding-protein-dependent transport system inner membrane component HCD_07175 PF12911 HCD_07175 HCD_07180 PF00528 Binding-protein-dependent transport system inner membrane component HCD_07185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HCD_07190 PF01016 Ribosomal L27 protein HCD_07195 PF00829 Ribosomal prokaryotic L21 protein HCD_07200 PF00669 Bacterial flagellin N-terminal helical region HCD_07220 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HCD_07225 PF00534 Glycosyl transferases group 1 HCD_07225 PF13439 Glycosyltransferase Family 4 HCD_07230 PF03061 Thioesterase superfamily HCD_07250 PF00133 tRNA synthetases class I (I, L, M and V) HCD_07250 PF01588 Putative tRNA binding domain HCD_07250 PF09334 tRNA synthetases class I (M) HCD_07255 PF02353 Mycolic acid cyclopropane synthetase HCD_07260 PF00924 Mechanosensitive ion channel HCD_07265 PF08238 Sel1 repeat HCD_07270 PF01019 Gamma-glutamyltranspeptidase HCD_07275 PF00460 Flagella basal body rod protein HCD_07275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HCD_07285 PF11463 R HCD_07290 PF00145 C-5 cytosine-specific DNA methylase HCD_07295 PF04316 Anti-sigma-28 factor, FlgM HCD_07305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HCD_07315 PF00691 OmpA family HCD_07320 PF07676 WD40-like Beta Propeller Repeat HCD_07325 PF13103 TonB C terminal HCD_07330 PF02472 Biopolymer transport protein ExbD/TolR HCD_07335 PF01618 HCD_07335 HCD_07340 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HCD_07345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HCD_07345 PF02874 ATP synthase alpha/beta family, beta-barrel domain HCD_07350 PF00231 ATP synthase HCD_07355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HCD_07355 PF00306 ATP synthase alpha/beta chain, C terminal domain HCD_07355 PF02874 ATP synthase alpha/beta family, beta-barrel domain HCD_07360 PF00213 ATP synthase delta (OSCP) subunit HCD_07365 PF00430 ATP synthase B/B' CF(0) HCD_07370 PF00430 ATP synthase B/B' CF(0) HCD_07375 PF02195 ParB-like nuclease domain HCD_07380 PF13614 AAA domain HCD_07385 PF03099 Biotin/lipoate A/B protein ligase family HCD_07390 PF00551 Formyl transferase HCD_07390 PF02911 Formyl transferase, C-terminal domain HCD_07395 PF13166 HCD_07395 HCD_07400 PF09903 HCD_07400 HCD_07415 PF02151 UvrB/uvrC motif HCD_07420 PF02521 HCD_07420 HCD_07425 PF00183 Hsp90 protein HCD_07425 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCD_07430 PF06306 HCD_07430 HCD_07435 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HCD_07440 PF00270 DEAD/DEAH box helicase HCD_07440 PF00271 Helicase conserved C-terminal domain HCD_07460 PF01385 HCD_07460 HCD_07460 PF07282 HCD_07460 HCD_07460 PF12323 HCD_07460 HCD_07465 PF01797 Transposase IS200 like HCD_07470 PF00145 C-5 cytosine-specific DNA methylase HCD_07475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HCD_07495 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain HCD_07495 PF02785 Biotin carboxylase C-terminal domain HCD_07495 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HCD_07500 PF00364 Biotin-requiring enzyme HCD_07505 PF00692 dUTPase HCD_07515 PF04452 RNA methyltransferase HCD_07525 PF00762 Ferrochelatase HCD_07530 PF13098 Thioredoxin-like domain HCD_07535 PF01578 HCD_07535 HCD_07535 PF05140 HCD_07535 HCD_07545 PF02661 Fic/DOC family HCD_07565 PF02452 PemK-like protein HCD_07570 PF04610 HCD_07570 HCD_07580 PF02661 Fic/DOC family HCD_07585 PF02534 Type IV secretory system Conjugative DNA transfer HCD_07615 PF08401 HCD_07615 HCD_07620 PF01131 DNA topoisomerase HCD_07620 PF01751 Toprim domain HCD_07640 PF00437 Type II/IV secretion system protein HCD_07650 PF03743 Bacterial conjugation TrbI-like protein HCD_07655 PF03524 Conjugal transfer protein HCD_07660 PF04335 VirB8 protein HCD_07670 PF03135 HCD_07670 HCD_07690 PF00581 Rhodanese-like domain HCD_07695 PF02602 Uroporphyrinogen-III synthase HemD HCD_07700 PF02537 HCD_07700 HCD_07705 PF04055 Radical SAM superfamily HCD_07710 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HCD_07715 PF00293 NUDIX domain HCD_07720 PF00696 Amino acid kinase family HCD_07720 PF01842 ACT domain HCD_07720 PF13840 ACT domain HCD_07725 PF12163 DNA replication regulator HCD_07730 PF13177 DNA polymerase III, delta subunit HCD_07735 PF00809 Pterin binding enzyme HCD_07750 PF01474 Class-II DAHP synthetase family HCD_07755 PF03222 Tryptophan/tyrosine permease family HCD_07760 PF03313 HCD_07760 HCD_07760 PF03315 Serine dehydratase beta chain HCD_07765 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) HCD_07770 PF01385 HCD_07770 HCD_07770 PF07282 HCD_07770 HCD_07770 PF12323 HCD_07770 HCD_07775 PF01797 Transposase IS200 like HCD_07780 PF01420 Type I restriction modification DNA specificity domain HCD_07780 PF02384 N-6 DNA Methylase HCD_07790 PF01385 HCD_07790 HCD_07790 PF07282 HCD_07790 HCD_07790 PF12323 HCD_07790 HCD_07795 PF01797 Transposase IS200 like HCD_07800 PF01856 HCD_07800 HCD_07805 PF13738 Pyridine nucleotide-disulphide oxidoreductase HCD_07810 PF03597 HCD_07810 HCD_07815 PF09335 HCD_07815 HCD_07820 PF00258 Flavodoxin HCD_07825 PF02130 Uncharacterized protein family UPF0054 HCD_07830 PF03807 NADP oxidoreductase coenzyme F420-dependent HCD_07830 PF14748 Pyrroline-5-carboxylate reductase dimerisation HCD_07835 PF01856 HCD_07835 HCD_07845 PF01797 Transposase IS200 like HCD_07850 PF01385 HCD_07850 HCD_07850 PF07282 HCD_07850 HCD_07850 PF12323 HCD_07850 HCD_07855 PF03033 Glycosyltransferase family 28 N-terminal domain HCD_07855 PF04101 Glycosyltransferase family 28 C-terminal domain HCD_07860 PF02623 FliW protein HCD_07865 PF00133 tRNA synthetases class I (I, L, M and V) HCD_07865 PF08264 Anticodon-binding domain of tRNA HCD_07865 PF10458 Valyl tRNA synthetase tRNA binding arm HCD_07870 PF00448 SRP54-type protein, GTPase domain HCD_07870 PF02881 SRP54-type protein, helical bundle domain HCD_07870 PF02978 Signal peptide binding domain HCD_07875 PF00886 Ribosomal protein S16 HCD_07880 PF13083 KH domain HCD_07885 PF01782 RimM N-terminal domain HCD_07885 PF05239 PRC-barrel domain HCD_07890 PF01746 tRNA (Guanine-1)-methyltransferase HCD_07895 PF01245 Ribosomal protein L19 HCD_07905 PF00892 EamA-like transporter family HCD_07935 PF01131 DNA topoisomerase HCD_07935 PF01751 Toprim domain HCD_07940 PF01385 HCD_07940 HCD_07940 PF07282 HCD_07940 HCD_07940 PF12323 HCD_07940 HCD_07945 PF01797 Transposase IS200 like HCD_07950 PF03135 HCD_07950 HCD_07960 PF04956 HCD_07960 HCD_07980 PF00107 Zinc-binding dehydrogenase HCD_07980 PF08240 Alcohol dehydrogenase GroES-like domain HCD_07985 PF01501 Glycosyl transferase family 8 HCD_07995 PF01856 HCD_07995 HCD_08000 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HCD_08005 PF14697 4Fe-4S dicluster domain HCD_08010 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HCD_08010 PF17147 HCD_08010 HCD_08015 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HCD_08020 PF00206 Lyase HCD_08020 PF10397 Adenylosuccinate lyase C-terminus HCD_08025 PF01856 HCD_08025 HCD_08030 PF01546 Peptidase family M20/M25/M40 HCD_08030 PF07687 Peptidase dimerisation domain HCD_08035 PF01134 Glucose inhibited division protein A HCD_08035 PF13932 GidA associated domain 3 HCD_08040 PF00939 Sodium:sulfate symporter transmembrane region HCD_08045 PF01148 Cytidylyltransferase family HCD_08050 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HCD_08050 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal HCD_08050 PF13288 DXP reductoisomerase C-terminal domain HCD_08055 PF05036 Sporulation related domain HCD_08065 PF00872 HCD_08065 HCD_08070 PF00872 HCD_08070 HCD_08090 PF01797 Transposase IS200 like HCD_08095 PF01385 HCD_08095 HCD_08095 PF07282 HCD_08095 HCD_08095 PF12323 HCD_08095 HCD_08110 PF13391 HCD_08110 HCD_08115 PF05491 Holliday junction DNA helicase ruvB C-terminus HCD_08115 PF05496 Holliday junction DNA helicase ruvB N-terminus HCD_08120 PF02548 Ketopantoate hydroxymethyltransferase HCD_08130 PF01856 HCD_08130 HCD_08135 PF01856 HCD_08135 HCD_08145 PF03775 Septum formation inhibitor MinC, C-terminal domain HCD_08150 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HCD_08160 PF00288 GHMP kinases N terminal domain HCD_08170 PF00009 Elongation factor Tu GTP binding domain HCD_08170 PF04760 Translation initiation factor IF-2, N-terminal region HCD_08170 PF11987 Translation-initiation factor 2 HCD_08175 PF02033 Ribosome-binding factor A HCD_08180 PF02576 Uncharacterised BCR, YhbC family COG0779 HCD_08180 PF17384 HCD_08180 HCD_08185 PF01797 Transposase IS200 like HCD_08195 PF03750 HCD_08195 HCD_08215 PF10040 Uncharacterized conserved protein (DUF2276) HCD_08235 PF01435 Peptidase family M48 HCD_08235 PF16491 HCD_08235 HCD_08240 PF05175 Methyltransferase small domain HCD_08245 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HCD_08245 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HCD_08250 PF01161 Phosphatidylethanolamine-binding protein HCD_08260 PF00266 Aminotransferase class-V HCD_08265 PF01106 NifU-like domain HCD_08265 PF01592 NifU-like N terminal domain HCD_08265 PF04324 BFD-like [2Fe-2S] binding domain HCD_08270 PF16777 HCD_08270 HCD_08275 PF13481 AAA domain HCD_08275 PF13541 Subunit ChlI of Mg-chelatase HCD_08280 PF01625 Peptide methionine sulfoxide reductase HCD_08280 PF01641 SelR domain HCD_08285 PF03432 HCD_08285 HCD_08290 PF05713 HCD_08290 HCD_08325 PF01797 Transposase IS200 like HCD_08330 PF01385 HCD_08330 HCD_08330 PF07282 HCD_08330 HCD_08330 PF12323 HCD_08330 HCD_08335 PF02534 Type IV secretory system Conjugative DNA transfer HCD_08340 PF02661 Fic/DOC family HCD_08355 PF00176 SNF2 family N-terminal domain HCD_08355 PF07669 Eco57I restriction-modification methylase HCD_08360 PF00589 Phage integrase family HCD_08375 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HCD_08410 PF01856 HCD_08410 HCD_08415 PF01565 FAD binding domain HCD_08415 PF02913 FAD linked oxidases, C-terminal domain HCD_08415 PF12838 4Fe-4S dicluster domain HCD_08420 PF01255 Putative undecaprenyl diphosphate synthase HCD_08425 PF00005 ABC transporter HCD_08435 PF08238 Sel1 repeat HCD_08440 PF01081 KDPG and KHG aldolase HCD_08445 PF00920 Dehydratase family HCD_08450 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HCD_08450 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HCD_08455 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HCD_08460 PF02685 Glucokinase HCD_08465 PF00145 C-5 cytosine-specific DNA methylase HCD_08475 PF07690 Major Facilitator Superfamily HCD_08480 PF00342 Phosphoglucose isomerase HCD_08485 PF02521 HCD_08485 HCD_08490 PF02554 HCD_08490 HCD_08490 PF13722 HCD_08490 HCD_08495 PF00528 Binding-protein-dependent transport system inner membrane component HCD_08500 PF00528 Binding-protein-dependent transport system inner membrane component HCD_08505 PF00005 ABC transporter HCD_08510 PF00497 Bacterial extracellular solute-binding proteins, family 3 HCD_08530 PF07690 Major Facilitator Superfamily HCD_08535 PF00860 Permease family HCD_08550 PF05175 Methyltransferase small domain HCD_08555 PF00586 AIR synthase related protein, N-terminal domain HCD_08555 PF02769 AIR synthase related protein, C-terminal domain HCD_08560 PF00708 Acylphosphatase HCD_08560 PF01300 Telomere recombination HCD_08560 PF07503 HypF finger HCD_08565 PF04371 Porphyromonas-type peptidyl-arginine deiminase HCD_08570 PF01555 DNA methylase HCD_08575 PF00145 C-5 cytosine-specific DNA methylase HCD_08590 PF00814 Glycoprotease family HCD_08595 PF02086 D12 class N6 adenine-specific DNA methyltransferase HCD_08605 PF00460 Flagella basal body rod protein HCD_08605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HCD_08615 PF12762 HCD_08615 HCD_08625 PF00145 C-5 cytosine-specific DNA methylase HCD_08630 PF00145 C-5 cytosine-specific DNA methylase HCD_08640 PF03981 HCD_08640 HCD_08640 PF13099 HCD_08640 HCD_08729 PF01385 HCD_08729 HCD_08729 PF07282 HCD_08729 HCD_08729 PF12323 HCD_08729 HCD_08734 PF01797 Transposase IS200 like HCD_08744 PF05713 HCD_08744 HCD_08749 PF03432 HCD_08749 HCD_08759 PF01051 Initiator Replication protein HCD_08764 PF01385 HCD_08764 HCD_08764 PF07282 HCD_08764 HCD_08764 PF12323 HCD_08764 HCD_08769 PF01797 Transposase IS200 like HCD_08779 PF01051 Initiator Replication protein HCD_08799 PF05713 HCD_08799