HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 Pfam PF01300 Telomere recombination 209 380 4.8E-44 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 PIRSF PIRSF006256 4 754 2.1E-248 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 SUPERFAMILY SSF54975 9 92 2.03E-16 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 SUPERFAMILY SSF53067 656 747 2.71E-5 T 13-10-2018 HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 Pfam PF07503 HypF finger 111 144 2.3E-11 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 Pfam PF07503 HypF finger 161 191 1.7E-9 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 SUPERFAMILY SSF55821 178 387 1.19E-39 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 11 745 2.0E-287 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 Gene3D G3DSA:3.30.110.120 251 368 1.4E-117 T 13-10-2018 HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 ProSitePatterns PS00150 Acylphosphatase signature 1. 13 23 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 Gene3D G3DSA:3.90.870.50 11 359 1.4E-117 T 13-10-2018 HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 Gene3D G3DSA:3.30.420.350 484 731 2.1E-94 T 13-10-2018 HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 Pfam PF00708 Acylphosphatase 10 91 3.7E-13 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 HCD_08560 36b8a67837fe868de0ebb65036b8860e 755 Gene3D G3DSA:3.30.420.360 381 743 2.1E-94 T 13-10-2018 HCD_03815 195c9fdf566803ccb768095ffa41e090 285 SUPERFAMILY SSF46626 161 268 1.06E-16 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_03815 195c9fdf566803ccb768095ffa41e090 285 Gene3D G3DSA:1.10.760.10 51 157 3.4E-19 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_03815 195c9fdf566803ccb768095ffa41e090 285 SUPERFAMILY SSF46626 30 151 2.18E-19 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_03815 195c9fdf566803ccb768095ffa41e090 285 Pfam PF00034 Cytochrome c 54 152 3.5E-13 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_03815 195c9fdf566803ccb768095ffa41e090 285 Pfam PF02167 Cytochrome C1 family 235 283 2.3E-5 T 13-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 HCD_03815 195c9fdf566803ccb768095ffa41e090 285 Gene3D G3DSA:1.10.760.10 158 248 6.8E-11 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_03815 195c9fdf566803ccb768095ffa41e090 285 PIRSF PIRSF019225 40 159 8.9E-48 T 13-10-2018 IPR021195 Ubiquinol cytochrome c reductase, cytochrome c1 subunit, predicted HCD_03815 195c9fdf566803ccb768095ffa41e090 285 PIRSF PIRSF019225 1 44 1.0E-18 T 13-10-2018 IPR021195 Ubiquinol cytochrome c reductase, cytochrome c1 subunit, predicted HCD_03815 195c9fdf566803ccb768095ffa41e090 285 PIRSF PIRSF019225 156 285 2.0E-70 T 13-10-2018 IPR021195 Ubiquinol cytochrome c reductase, cytochrome c1 subunit, predicted HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 2 134 2.7E-45 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 93 102 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 255 8.4E-19 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 SUPERFAMILY SSF53738 259 360 2.43E-22 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 Gene3D G3DSA:3.40.120.10 258 341 1.0E-59 T 13-10-2018 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 SUPERFAMILY SSF53738 2 181 2.47E-47 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 4 437 9.8E-153 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 Gene3D G3DSA:3.40.120.10 1 149 5.6E-49 T 13-10-2018 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 Gene3D G3DSA:3.30.310.50 372 444 2.0E-8 T 13-10-2018 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 Gene3D G3DSA:3.40.120.10 175 359 1.0E-59 T 13-10-2018 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 235 250 1.5E-13 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 92 106 1.5E-13 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 175 194 1.5E-13 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 SUPERFAMILY SSF53738 157 258 2.08E-27 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 443 40.479 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 260 363 3.3E-24 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_03570 1ec4685d69a5bcb35bb4abae73601dc7 445 SUPERFAMILY SSF55957 366 443 7.33E-10 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_06110 8a38de92951aa1a9596adb979b32e51d 178 Gene3D G3DSA:2.60.120.370 16 174 1.1E-20 T 13-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily HCD_06110 8a38de92951aa1a9596adb979b32e51d 178 Pfam PF04074 Domain of unknown function (DUF386) 22 170 1.3E-21 T 13-10-2018 IPR004375 YhcH/YjgK/YiaL family HCD_06110 8a38de92951aa1a9596adb979b32e51d 178 SUPERFAMILY SSF51197 3 172 6.32E-24 T 13-10-2018 HCD_06110 8a38de92951aa1a9596adb979b32e51d 178 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 69 170 5.0E-15 T 13-10-2018 IPR004375 YhcH/YjgK/YiaL family HCD_00875 8bccaf891a4f4c434580704416749c20 177 PRINTS PR01019 LPP20 lipoprotein precursor signature 62 81 1.4E-93 T 13-10-2018 IPR002217 Lipoprotein LPP20 GO:0009279 HCD_00875 8bccaf891a4f4c434580704416749c20 177 PRINTS PR01019 LPP20 lipoprotein precursor signature 2 23 1.4E-93 T 13-10-2018 IPR002217 Lipoprotein LPP20 GO:0009279 HCD_00875 8bccaf891a4f4c434580704416749c20 177 PRINTS PR01019 LPP20 lipoprotein precursor signature 24 42 1.4E-93 T 13-10-2018 IPR002217 Lipoprotein LPP20 GO:0009279 HCD_00875 8bccaf891a4f4c434580704416749c20 177 PRINTS PR01019 LPP20 lipoprotein precursor signature 82 102 1.4E-93 T 13-10-2018 IPR002217 Lipoprotein LPP20 GO:0009279 HCD_00875 8bccaf891a4f4c434580704416749c20 177 PRINTS PR01019 LPP20 lipoprotein precursor signature 146 169 1.4E-93 T 13-10-2018 IPR002217 Lipoprotein LPP20 GO:0009279 HCD_00875 8bccaf891a4f4c434580704416749c20 177 PRINTS PR01019 LPP20 lipoprotein precursor signature 43 61 1.4E-93 T 13-10-2018 IPR002217 Lipoprotein LPP20 GO:0009279 HCD_00875 8bccaf891a4f4c434580704416749c20 177 PRINTS PR01019 LPP20 lipoprotein precursor signature 103 120 1.4E-93 T 13-10-2018 IPR002217 Lipoprotein LPP20 GO:0009279 HCD_00875 8bccaf891a4f4c434580704416749c20 177 PRINTS PR01019 LPP20 lipoprotein precursor signature 127 145 1.4E-93 T 13-10-2018 IPR002217 Lipoprotein LPP20 GO:0009279 HCD_00875 8bccaf891a4f4c434580704416749c20 177 Pfam PF02169 LPP20 lipoprotein 45 159 2.3E-11 T 13-10-2018 IPR024952 Lipoprotein LPP20-like HCD_00875 8bccaf891a4f4c434580704416749c20 177 PIRSF PIRSF011368 1 175 2.2E-104 T 13-10-2018 IPR002217 Lipoprotein LPP20 GO:0009279 HCD_04500 f3509582fc72b68bd0dbfd68c0c7bfb2 489 Pfam PF13746 4Fe-4S dicluster domain 217 324 1.9E-40 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_04500 f3509582fc72b68bd0dbfd68c0c7bfb2 489 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 36 480 5.2E-150 T 13-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 HCD_04500 f3509582fc72b68bd0dbfd68c0c7bfb2 489 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 273 284 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_04500 f3509582fc72b68bd0dbfd68c0c7bfb2 489 SUPERFAMILY SSF54862 101 318 6.77E-21 T 13-10-2018 HCD_04500 f3509582fc72b68bd0dbfd68c0c7bfb2 489 Gene3D G3DSA:2.60.40.10 361 481 3.8E-6 T 13-10-2018 IPR013783 Immunoglobulin-like fold HCD_04500 f3509582fc72b68bd0dbfd68c0c7bfb2 489 Pfam PF12801 4Fe-4S binding domain 89 132 4.4E-14 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_04500 f3509582fc72b68bd0dbfd68c0c7bfb2 489 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 356 481 6.0E-21 T 13-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain HCD_02320 3cfc5e5963f8a88c28dc19e37de58753 336 Gene3D G3DSA:3.40.50.2000 173 324 1.6E-25 T 13-10-2018 HCD_02320 3cfc5e5963f8a88c28dc19e37de58753 336 SUPERFAMILY SSF53756 2 334 1.02E-67 T 13-10-2018 HCD_02320 3cfc5e5963f8a88c28dc19e37de58753 336 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 2 331 1.0E-106 T 13-10-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 HCD_02320 3cfc5e5963f8a88c28dc19e37de58753 336 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 71 318 2.8E-66 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 HCD_02320 3cfc5e5963f8a88c28dc19e37de58753 336 Gene3D G3DSA:3.40.50.2000 1 157 6.6E-51 T 13-10-2018 HCD_02865 49717a1c1ed51fc33f4a4ecaaa792fb4 128 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 2 124 9.0E-69 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_02865 49717a1c1ed51fc33f4a4ecaaa792fb4 128 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_02865 49717a1c1ed51fc33f4a4ecaaa792fb4 128 SUPERFAMILY SSF50249 2 123 3.17E-51 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_02865 49717a1c1ed51fc33f4a4ecaaa792fb4 128 PIRSF PIRSF002133 1 124 4.8E-54 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_02865 49717a1c1ed51fc33f4a4ecaaa792fb4 128 PRINTS PR01034 Ribosomal protein S12 signature 77 94 8.3E-58 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_02865 49717a1c1ed51fc33f4a4ecaaa792fb4 128 PRINTS PR01034 Ribosomal protein S12 signature 94 110 8.3E-58 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_02865 49717a1c1ed51fc33f4a4ecaaa792fb4 128 PRINTS PR01034 Ribosomal protein S12 signature 27 42 8.3E-58 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_02865 49717a1c1ed51fc33f4a4ecaaa792fb4 128 PRINTS PR01034 Ribosomal protein S12 signature 58 77 8.3E-58 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_02865 49717a1c1ed51fc33f4a4ecaaa792fb4 128 PRINTS PR01034 Ribosomal protein S12 signature 110 122 8.3E-58 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_02865 49717a1c1ed51fc33f4a4ecaaa792fb4 128 PRINTS PR01034 Ribosomal protein S12 signature 42 57 8.3E-58 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_02865 49717a1c1ed51fc33f4a4ecaaa792fb4 128 Pfam PF00164 Ribosomal protein S12/S23 12 123 3.9E-41 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_02865 49717a1c1ed51fc33f4a4ecaaa792fb4 128 Gene3D G3DSA:2.40.50.140 1 128 5.3E-62 T 13-10-2018 HCD_02865 49717a1c1ed51fc33f4a4ecaaa792fb4 128 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 39.051 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03560 21c13bc91746a42e69914bbc0a128eff 352 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 4 352 37.738 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 HCD_03560 21c13bc91746a42e69914bbc0a128eff 352 SMART SM00937 66 177 3.4E-54 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 HCD_03560 21c13bc91746a42e69914bbc0a128eff 352 Gene3D G3DSA:3.30.70.1660 111 341 2.1E-91 T 13-10-2018 HCD_03560 21c13bc91746a42e69914bbc0a128eff 352 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 3 350 4.1E-167 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 HCD_03560 21c13bc91746a42e69914bbc0a128eff 352 Pfam PF00472 RF-1 domain 209 319 2.5E-37 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 HCD_03560 21c13bc91746a42e69914bbc0a128eff 352 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 226 242 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 HCD_03560 21c13bc91746a42e69914bbc0a128eff 352 Pfam PF03462 PCRF domain 13 202 7.0E-67 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 HCD_03560 21c13bc91746a42e69914bbc0a128eff 352 Gene3D G3DSA:3.30.160.20 209 295 2.1E-91 T 13-10-2018 HCD_03560 21c13bc91746a42e69914bbc0a128eff 352 SUPERFAMILY SSF75620 11 349 7.19E-126 T 13-10-2018 HCD_00890 44b4cf25e98f5df2926d637c596f3442 419 SUPERFAMILY SSF53448 3 299 6.75E-34 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_00890 44b4cf25e98f5df2926d637c596f3442 419 Gene3D G3DSA:3.90.550.10 3 306 1.7E-41 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_00890 44b4cf25e98f5df2926d637c596f3442 419 Pfam PF01501 Glycosyl transferase family 8 5 288 5.6E-29 T 13-10-2018 IPR002495 Glycosyl transferase, family 8 GO:0016757 HCD_02325 a0d1ba0011df45e73026535714e75a46 484 Gene3D G3DSA:1.10.3210.10 308 472 2.2E-17 T 13-10-2018 HCD_02325 a0d1ba0011df45e73026535714e75a46 484 PIRSF PIRSF001267 1 484 3.6E-110 T 13-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 HCD_02325 a0d1ba0011df45e73026535714e75a46 484 Gene3D G3DSA:3.30.420.150 111 293 6.0E-42 T 13-10-2018 HCD_02325 a0d1ba0011df45e73026535714e75a46 484 SUPERFAMILY SSF53067 130 298 5.73E-38 T 13-10-2018 HCD_02325 a0d1ba0011df45e73026535714e75a46 484 Gene3D G3DSA:3.30.420.40 1 110 5.9E-29 T 13-10-2018 HCD_02325 a0d1ba0011df45e73026535714e75a46 484 SUPERFAMILY SSF53067 6 127 6.94E-30 T 13-10-2018 HCD_02325 a0d1ba0011df45e73026535714e75a46 484 SUPERFAMILY SSF109604 308 460 1.69E-26 T 13-10-2018 HCD_02325 a0d1ba0011df45e73026535714e75a46 484 Pfam PF02541 Ppx/GppA phosphatase family 19 298 2.9E-84 T 13-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 HCD_01135 db6032d7fd034ce189c9016dfd3ae734 305 Pfam PF01856 Helicobacter outer membrane protein 94 305 6.1E-8 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04020 770f0acdaf81c34308c2425ecb47e2ee 73 SUPERFAMILY SSF50104 3 71 8.17E-23 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily HCD_04020 770f0acdaf81c34308c2425ecb47e2ee 73 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 40 71 8.4E-9 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_04020 770f0acdaf81c34308c2425ecb47e2ee 73 Pfam PF00467 KOW motif 7 38 3.9E-7 T 13-10-2018 IPR005824 KOW HCD_04020 770f0acdaf81c34308c2425ecb47e2ee 73 Gene3D G3DSA:2.30.30.1090 1 70 2.8E-27 T 13-10-2018 HCD_04020 770f0acdaf81c34308c2425ecb47e2ee 73 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 72 14.313 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_04020 770f0acdaf81c34308c2425ecb47e2ee 73 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 13-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04020 770f0acdaf81c34308c2425ecb47e2ee 73 SMART SM00739 4 31 2.8E-6 T 13-10-2018 IPR005824 KOW HCD_04020 770f0acdaf81c34308c2425ecb47e2ee 73 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 72 6.2E-26 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_04100 2b8cbf02b3db79ea12c761eb771a7994 463 PRINTS PR00149 Fumarate lyase superfamily signature 270 297 2.0E-33 T 13-10-2018 IPR000362 Fumarate lyase family HCD_04100 2b8cbf02b3db79ea12c761eb771a7994 463 PRINTS PR00149 Fumarate lyase superfamily signature 316 332 2.0E-33 T 13-10-2018 IPR000362 Fumarate lyase family HCD_04100 2b8cbf02b3db79ea12c761eb771a7994 463 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 2.0E-33 T 13-10-2018 IPR000362 Fumarate lyase family HCD_04100 2b8cbf02b3db79ea12c761eb771a7994 463 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 2.0E-33 T 13-10-2018 IPR000362 Fumarate lyase family HCD_04100 2b8cbf02b3db79ea12c761eb771a7994 463 Gene3D G3DSA:1.20.200.10 138 405 2.2E-117 T 13-10-2018 HCD_04100 2b8cbf02b3db79ea12c761eb771a7994 463 Pfam PF10415 Fumarase C C-terminus 407 460 1.3E-23 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 HCD_04100 2b8cbf02b3db79ea12c761eb771a7994 463 Pfam PF00206 Lyase 11 341 4.7E-117 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal HCD_04100 2b8cbf02b3db79ea12c761eb771a7994 463 Gene3D G3DSA:1.10.275.10 4 137 2.6E-55 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal HCD_04100 2b8cbf02b3db79ea12c761eb771a7994 463 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 461 91.324 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 HCD_04100 2b8cbf02b3db79ea12c761eb771a7994 463 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 460 1.6E-254 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 HCD_04100 2b8cbf02b3db79ea12c761eb771a7994 463 ProSitePatterns PS00163 Fumarate lyases signature. 316 325 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 HCD_04100 2b8cbf02b3db79ea12c761eb771a7994 463 Gene3D G3DSA:1.10.40.30 407 462 3.0E-27 T 13-10-2018 HCD_04100 2b8cbf02b3db79ea12c761eb771a7994 463 SUPERFAMILY SSF48557 3 458 5.97E-154 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 HCD_05895 f64a050e93f5005c74ba0bb4580a85a2 193 Pfam PF02132 RecR protein 45 81 2.2E-12 T 13-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger HCD_05895 f64a050e93f5005c74ba0bb4580a85a2 193 Gene3D G3DSA:3.40.1360.10 81 192 3.3E-22 T 13-10-2018 HCD_05895 f64a050e93f5005c74ba0bb4580a85a2 193 TIGRFAM TIGR00615 recR: recombination protein RecR 7 190 7.7E-69 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 HCD_05895 f64a050e93f5005c74ba0bb4580a85a2 193 SUPERFAMILY SSF111304 8 192 6.28E-56 T 13-10-2018 IPR023627 Recombination protein RecR HCD_05895 f64a050e93f5005c74ba0bb4580a85a2 193 ProSitePatterns PS01300 RecR protein signature. 61 82 - T 13-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 HCD_05895 f64a050e93f5005c74ba0bb4580a85a2 193 Gene3D G3DSA:1.10.8.420 6 57 2.2E-6 T 13-10-2018 HCD_05895 f64a050e93f5005c74ba0bb4580a85a2 193 Hamap MF_00017 Recombination protein RecR [recR]. 1 193 57.01 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 101 124 3.6E-88 T 13-10-2018 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 258 277 3.6E-88 T 13-10-2018 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 9 27 3.6E-88 T 13-10-2018 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 61 81 3.6E-88 T 13-10-2018 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 140 165 3.6E-88 T 13-10-2018 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 385 403 3.6E-88 T 13-10-2018 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 166 189 3.6E-88 T 13-10-2018 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 353 371 3.6E-88 T 13-10-2018 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 298 320 3.6E-88 T 13-10-2018 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 Gene3D G3DSA:1.10.3370.10 1 412 6.3E-141 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 ProSitePatterns PS00755 Protein secY signature 1. 62 81 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 7 411 9.2E-109 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 SUPERFAMILY SSF103491 4 407 2.62E-111 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 Pfam PF00344 SecY translocase 62 400 1.6E-99 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 Hamap MF_01465 Protein translocase subunit SecY [secY]. 1 416 27.518 T 13-10-2018 IPR026593 Protein translocase subunit SecY HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 PIRSF PIRSF004557 1 420 1.4E-129 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 HCD_03980 3d0d953a3e99470c280de607a2f6d5c6 420 ProSitePatterns PS00756 Protein secY signature 2. 159 176 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 HCD_05105 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_05105 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_05105 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_05105 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_08734 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_08734 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_08734 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_08734 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_08325 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_08325 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_08325 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_08325 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_08769 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_08769 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_08769 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_08769 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_01020 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_01020 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_01020 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_01020 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_02980 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_02980 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_02980 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_02980 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_07845 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_07845 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_07845 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_07845 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_06185 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_06185 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_06185 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_06185 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_08090 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_08090 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_08090 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_08090 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_01960 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_01960 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_01960 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_01960 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_05160 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_05160 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_05160 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_05160 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_01725 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_01725 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_01725 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_01725 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_02415 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_02415 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_02415 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_02415 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_02220 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_02220 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_02220 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_02220 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_07465 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_07465 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_07465 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_07465 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_07795 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_07795 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_07795 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_07795 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_01190 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_01190 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_01190 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_01190 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_02475 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_02475 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_02475 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_02475 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_07945 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_07945 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_07945 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_07945 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_05190 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_05190 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_05190 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_05190 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_07775 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_07775 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_07775 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_07775 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_02825 95ed3ef1e7c69fe86af47d5e3ba17463 138 SUPERFAMILY SSF143422 5 135 8.89E-48 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_02825 95ed3ef1e7c69fe86af47d5e3ba17463 138 Pfam PF01797 Transposase IS200 like 15 134 2.8E-42 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_02825 95ed3ef1e7c69fe86af47d5e3ba17463 138 SMART SM01321 14 134 7.3E-45 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_02825 95ed3ef1e7c69fe86af47d5e3ba17463 138 Gene3D G3DSA:3.30.70.1290 2 136 1.1E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_07440 29a8c67a627cf9b3f9093de56362caf3 619 Pfam PF00271 Helicase conserved C-terminal domain 396 487 1.1E-7 T 13-10-2018 IPR001650 Helicase, C-terminal HCD_07440 29a8c67a627cf9b3f9093de56362caf3 619 SMART SM00487 107 297 2.0E-27 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain HCD_07440 29a8c67a627cf9b3f9093de56362caf3 619 Gene3D G3DSA:3.40.50.300 99 284 2.3E-61 T 13-10-2018 HCD_07440 29a8c67a627cf9b3f9093de56362caf3 619 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 618 19.475 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 HCD_07440 29a8c67a627cf9b3f9093de56362caf3 619 Pfam PF00270 DEAD/DEAH box helicase 113 274 3.3E-17 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 HCD_07440 29a8c67a627cf9b3f9093de56362caf3 619 TIGRFAM TIGR00595 priA: primosomal protein N' 129 616 8.5E-179 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 HCD_07440 29a8c67a627cf9b3f9093de56362caf3 619 SMART SM00490 392 489 7.6E-5 T 13-10-2018 IPR001650 Helicase, C-terminal HCD_07440 29a8c67a627cf9b3f9093de56362caf3 619 SUPERFAMILY SSF52540 122 495 8.79E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_06600 d1f6cbdf7a6587f068f64f09cbe144f5 242 SUPERFAMILY SSF52540 7 234 6.61E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_06600 d1f6cbdf7a6587f068f64f09cbe144f5 242 PIRSF PIRSF005624 12 241 4.8E-81 T 13-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 HCD_06600 d1f6cbdf7a6587f068f64f09cbe144f5 242 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 16 233 5.2E-92 T 13-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 HCD_06600 d1f6cbdf7a6587f068f64f09cbe144f5 242 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 48 210 7.0E-26 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain HCD_06600 d1f6cbdf7a6587f068f64f09cbe144f5 242 Gene3D G3DSA:3.40.50.300 28 242 9.5E-59 T 13-10-2018 HCD_05775 0458cfdd671fc3a3860020cc2d9091f7 210 SMART SM00382 29 209 6.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_05775 0458cfdd671fc3a3860020cc2d9091f7 210 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_05775 0458cfdd671fc3a3860020cc2d9091f7 210 Gene3D G3DSA:3.40.50.300 2 210 2.1E-60 T 13-10-2018 HCD_05775 0458cfdd671fc3a3860020cc2d9091f7 210 Pfam PF00005 ABC transporter 21 164 3.3E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_05775 0458cfdd671fc3a3860020cc2d9091f7 210 SUPERFAMILY SSF52540 4 208 7.57E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_00085 0853bee13d30e94d489347f6411c0e01 245 SUPERFAMILY SSF54427 106 239 6.57E-23 T 13-10-2018 IPR032710 NTF2-like domain superfamily HCD_00085 0853bee13d30e94d489347f6411c0e01 245 Gene3D G3DSA:3.10.450.230 102 245 4.3E-15 T 13-10-2018 HCD_00085 0853bee13d30e94d489347f6411c0e01 245 Pfam PF04335 VirB8 protein 43 239 4.3E-34 T 13-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 HCD_06950 b37be49e56decec04101be6a69c9bf5a 358 SUPERFAMILY SSF160544 240 346 1.31E-34 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal HCD_06950 b37be49e56decec04101be6a69c9bf5a 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 204 222 1.3E-36 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 HCD_06950 b37be49e56decec04101be6a69c9bf5a 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 297 318 1.3E-36 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 HCD_06950 b37be49e56decec04101be6a69c9bf5a 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 224 241 1.3E-36 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 HCD_06950 b37be49e56decec04101be6a69c9bf5a 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 7 29 1.3E-36 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 HCD_06950 b37be49e56decec04101be6a69c9bf5a 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 268 283 1.3E-36 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 HCD_06950 b37be49e56decec04101be6a69c9bf5a 358 Gene3D G3DSA:3.40.1690.10 213 355 7.5E-52 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal HCD_06950 b37be49e56decec04101be6a69c9bf5a 358 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 4 348 6.5E-130 T 13-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 HCD_06950 b37be49e56decec04101be6a69c9bf5a 358 Pfam PF01312 FlhB HrpN YscU SpaS Family 4 342 8.1E-115 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 HCD_08415 cad38bbb6eb618769d05dcc64d59c2d1 948 Gene3D G3DSA:3.30.70.2190 269 390 8.9E-6 T 13-10-2018 HCD_08415 cad38bbb6eb618769d05dcc64d59c2d1 948 SUPERFAMILY SSF46548 498 627 2.27E-14 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 HCD_08415 cad38bbb6eb618769d05dcc64d59c2d1 948 SUPERFAMILY SSF56176 16 262 3.19E-43 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 HCD_08415 cad38bbb6eb618769d05dcc64d59c2d1 948 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 546 557 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_08415 cad38bbb6eb618769d05dcc64d59c2d1 948 Pfam PF02913 FAD linked oxidases, C-terminal domain 268 519 1.1E-43 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 HCD_08415 cad38bbb6eb618769d05dcc64d59c2d1 948 Pfam PF12838 4Fe-4S dicluster domain 546 620 3.0E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_08415 cad38bbb6eb618769d05dcc64d59c2d1 948 Gene3D G3DSA:3.30.465.40 6 200 6.9E-24 T 13-10-2018 HCD_08415 cad38bbb6eb618769d05dcc64d59c2d1 948 Pfam PF01565 FAD binding domain 41 178 6.8E-28 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 HCD_08415 cad38bbb6eb618769d05dcc64d59c2d1 948 Gene3D G3DSA:1.10.1060.10 511 639 3.6E-5 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 HCD_08415 cad38bbb6eb618769d05dcc64d59c2d1 948 SUPERFAMILY SSF55103 270 529 6.7E-42 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 Gene3D G3DSA:1.10.730.10 6 739 1.7E-283 T 13-10-2018 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 Hamap MF_02004 Valine--tRNA ligase [valS]. 1 870 14.639 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 Gene3D G3DSA:3.90.740.10 181 347 1.7E-283 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 TIGRFAM TIGR00422 valS: valine--tRNA ligase 6 852 0.0 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 17 571 1.7E-184 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 SUPERFAMILY SSF52374 6 581 6.28E-128 T 13-10-2018 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 Pfam PF08264 Anticodon-binding domain of tRNA 614 747 1.0E-29 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 SUPERFAMILY SSF47323 582 800 4.86E-39 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 PRINTS PR00986 Valyl-tRNA synthetase signature 446 467 4.8E-35 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 PRINTS PR00986 Valyl-tRNA synthetase signature 483 501 4.8E-35 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 PRINTS PR00986 Valyl-tRNA synthetase signature 42 53 4.8E-35 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 PRINTS PR00986 Valyl-tRNA synthetase signature 235 252 4.8E-35 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 PRINTS PR00986 Valyl-tRNA synthetase signature 350 363 4.8E-35 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 SUPERFAMILY SSF50677 196 346 2.62E-61 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 Gene3D G3DSA:1.10.287.380 803 869 9.9E-8 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 Gene3D G3DSA:3.40.50.620 24 532 1.7E-283 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 SUPERFAMILY SSF46589 807 869 1.05E-8 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 807 869 3.0E-9 T 13-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 HCD_07865 ca3470bbb346a0e299bda91ecbc12698 874 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 49 60 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_08000 f0999a4c53e064803e9a7270004d38e6 186 TIGRFAM TIGR02175 PorC_KorC: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family 1 186 2.9E-49 T 13-10-2018 IPR011894 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0055114 HCD_08000 f0999a4c53e064803e9a7270004d38e6 186 SUPERFAMILY SSF53323 1 186 1.96E-44 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 HCD_08000 f0999a4c53e064803e9a7270004d38e6 186 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 10 183 2.4E-34 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 HCD_08000 f0999a4c53e064803e9a7270004d38e6 186 Gene3D G3DSA:3.40.920.10 1 186 3.1E-54 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 HCD_06150 6e818d29554733f44f9417a5268a5ae3 357 PRINTS PR00599 Methionine aminopeptidase-1 signature 210 226 1.3E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 HCD_06150 6e818d29554733f44f9417a5268a5ae3 357 PRINTS PR00599 Methionine aminopeptidase-1 signature 319 331 1.3E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 HCD_06150 6e818d29554733f44f9417a5268a5ae3 357 PRINTS PR00599 Methionine aminopeptidase-1 signature 187 200 1.3E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 HCD_06150 6e818d29554733f44f9417a5268a5ae3 357 SUPERFAMILY SSF53092 22 105 1.15E-5 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal HCD_06150 6e818d29554733f44f9417a5268a5ae3 357 Pfam PF00557 Metallopeptidase family M24 131 350 7.9E-56 T 13-10-2018 IPR000994 Peptidase M24 HCD_06150 6e818d29554733f44f9417a5268a5ae3 357 Gene3D G3DSA:3.90.230.10 124 357 6.4E-69 T 13-10-2018 HCD_06150 6e818d29554733f44f9417a5268a5ae3 357 Pfam PF01321 Creatinase/Prolidase N-terminal domain 28 110 2.5E-4 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 HCD_06150 6e818d29554733f44f9417a5268a5ae3 357 Gene3D G3DSA:3.40.350.10 1 123 6.1E-11 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal HCD_06150 6e818d29554733f44f9417a5268a5ae3 357 SUPERFAMILY SSF55920 79 357 1.44E-60 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like HCD_06150 6e818d29554733f44f9417a5268a5ae3 357 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 297 309 - T 13-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site HCD_03130 856914c00201acb82c7e74aa74e64204 261 Pfam PF01856 Helicobacter outer membrane protein 108 261 1.5E-45 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03130 856914c00201acb82c7e74aa74e64204 261 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 219 240 5.5E-22 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03130 856914c00201acb82c7e74aa74e64204 261 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 122 142 5.5E-22 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03130 856914c00201acb82c7e74aa74e64204 261 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 96 117 5.5E-22 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01530 29558c5b84a546721b186b255ecd51a6 374 Gene3D G3DSA:3.10.150.10 122 247 3.9E-20 T 13-10-2018 HCD_01530 29558c5b84a546721b186b255ecd51a6 374 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 1.2E-19 T 13-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 HCD_01530 29558c5b84a546721b186b255ecd51a6 374 SMART SM00480 17 363 4.2E-90 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 HCD_01530 29558c5b84a546721b186b255ecd51a6 374 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 373 3.9E-103 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 HCD_01530 29558c5b84a546721b186b255ecd51a6 374 SUPERFAMILY SSF55979 247 356 1.01E-12 T 13-10-2018 HCD_01530 29558c5b84a546721b186b255ecd51a6 374 SUPERFAMILY SSF55979 125 245 9.6E-16 T 13-10-2018 HCD_01530 29558c5b84a546721b186b255ecd51a6 374 Gene3D G3DSA:3.10.150.10 248 374 4.0E-47 T 13-10-2018 HCD_01530 29558c5b84a546721b186b255ecd51a6 374 Gene3D G3DSA:3.10.150.10 1 121 3.9E-26 T 13-10-2018 HCD_01530 29558c5b84a546721b186b255ecd51a6 374 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 247 362 3.8E-11 T 13-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 HCD_01530 29558c5b84a546721b186b255ecd51a6 374 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 244 3.7E-10 T 13-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 HCD_01530 29558c5b84a546721b186b255ecd51a6 374 SUPERFAMILY SSF55979 1 119 8.23E-20 T 13-10-2018 HCD_01245 8347c752ebe89b79dbaa7472948dcbc7 222 SMART SM00478 39 192 2.9E-27 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 HCD_01245 8347c752ebe89b79dbaa7472948dcbc7 222 SUPERFAMILY SSF48150 5 210 3.93E-44 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 HCD_01245 8347c752ebe89b79dbaa7472948dcbc7 222 Pfam PF00633 Helix-hairpin-helix motif 110 140 2.6E-8 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 HCD_01245 8347c752ebe89b79dbaa7472948dcbc7 222 Gene3D G3DSA:1.10.340.30 22 146 7.9E-95 T 13-10-2018 HCD_01245 8347c752ebe89b79dbaa7472948dcbc7 222 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 36 165 6.2E-12 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 HCD_01245 8347c752ebe89b79dbaa7472948dcbc7 222 Gene3D G3DSA:1.10.1670.10 4 213 7.9E-95 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 SUPERFAMILY SSF50447 210 306 8.25E-32 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily HCD_02910 4456d05a2338288dd0dbcee508d01839 399 SUPERFAMILY SSF50465 307 399 1.09E-34 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal HCD_02910 4456d05a2338288dd0dbcee508d01839 399 Gene3D G3DSA:2.40.30.10 211 339 3.6E-54 T 13-10-2018 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 Pfam PF00009 Elongation factor Tu GTP binding domain 10 206 7.8E-58 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 Pfam PF03144 Elongation factor Tu domain 2 230 299 1.1E-19 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 Gene3D G3DSA:3.40.50.300 1 208 1.1E-69 T 13-10-2018 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 399 60.206 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 3.2E-13 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 Pfam PF03143 Elongation factor Tu C-terminal domain 303 397 1.2E-31 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal HCD_02910 4456d05a2338288dd0dbcee508d01839 399 SUPERFAMILY SSF52540 9 231 4.46E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02910 4456d05a2338288dd0dbcee508d01839 399 Gene3D G3DSA:2.40.30.10 343 398 9.7E-28 T 13-10-2018 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.9E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.9E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.9E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.9E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.9E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 399 3.3E-234 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 HCD_02910 4456d05a2338288dd0dbcee508d01839 399 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site HCD_02135 7a612c591c2c35dba907894b19968fa1 330 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 16 180 4.1E-62 T 13-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 HCD_02135 7a612c591c2c35dba907894b19968fa1 330 PIRSF PIRSF000116 204 329 2.0E-13 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 HCD_02135 7a612c591c2c35dba907894b19968fa1 330 PIRSF PIRSF000116 7 208 6.2E-44 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 HCD_02135 7a612c591c2c35dba907894b19968fa1 330 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 17 328 4.0E-134 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 HCD_02135 7a612c591c2c35dba907894b19968fa1 330 SUPERFAMILY SSF51735 4 185 4.86E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_02135 7a612c591c2c35dba907894b19968fa1 330 Gene3D G3DSA:1.10.3730.40 185 330 7.8E-53 T 13-10-2018 HCD_02135 7a612c591c2c35dba907894b19968fa1 330 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 3 330 39.963 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 HCD_02135 7a612c591c2c35dba907894b19968fa1 330 Gene3D G3DSA:3.40.50.720 1 184 2.9E-65 T 13-10-2018 HCD_02135 7a612c591c2c35dba907894b19968fa1 330 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 186 324 3.7E-49 T 13-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 HCD_02135 7a612c591c2c35dba907894b19968fa1 330 SUPERFAMILY SSF48179 186 326 7.71E-54 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 HCD_08759 e30939711a52bcbcd6d649dabe090bf2 412 Gene3D G3DSA:1.10.10.10 163 267 1.5E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_08759 e30939711a52bcbcd6d649dabe090bf2 412 Gene3D G3DSA:1.10.10.10 14 162 4.9E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_08759 e30939711a52bcbcd6d649dabe090bf2 412 SUPERFAMILY SSF46785 21 148 1.31E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily HCD_08759 e30939711a52bcbcd6d649dabe090bf2 412 SUPERFAMILY SSF46785 148 251 2.04E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily HCD_08759 e30939711a52bcbcd6d649dabe090bf2 412 Pfam PF01051 Initiator Replication protein 20 247 1.3E-38 T 13-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 HCD_06915 ad873fba23617963ef9e65b4ca971401 211 SUPERFAMILY SSF100950 9 167 1.33E-24 T 13-10-2018 IPR037171 NagB/RpiA transferase-like HCD_06915 ad873fba23617963ef9e65b4ca971401 211 PIRSF PIRSF006806 2 168 1.3E-19 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase HCD_06915 ad873fba23617963ef9e65b4ca971401 211 Gene3D G3DSA:3.40.50.10420 1 180 4.4E-22 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily HCD_06915 ad873fba23617963ef9e65b4ca971401 211 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 5 164 5.6E-26 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase HCD_06915 ad873fba23617963ef9e65b4ca971401 211 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 21 147 2.2E-13 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase HCD_03520 f202b12aec2aea016141f01db031df46 451 Pfam PF00877 NlpC/P60 family 295 430 4.7E-16 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain HCD_03520 f202b12aec2aea016141f01db031df46 451 Pfam PF12913 SH3 domain (SH3b1 type) 139 184 5.1E-17 T 13-10-2018 IPR039439 SH3b1 domain HCD_03520 f202b12aec2aea016141f01db031df46 451 SUPERFAMILY SSF54001 276 387 2.32E-12 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily HCD_03520 f202b12aec2aea016141f01db031df46 451 Pfam PF12912 NLPC_P60 stabilising domain, N term 5 113 5.2E-9 T 13-10-2018 IPR025606 NLPC/P60, N-terminal domain HCD_03520 f202b12aec2aea016141f01db031df46 451 PIRSF PIRSF019015 12 442 9.3E-135 T 13-10-2018 IPR027017 Uncharacterised peptidase with NlpC/P60 domain, YkfC type HCD_03520 f202b12aec2aea016141f01db031df46 451 Pfam PF12914 SH3 domain of SH3b2 type 201 239 4.1E-8 T 13-10-2018 IPR026864 SH3b2-type SH3 domain HCD_03520 f202b12aec2aea016141f01db031df46 451 Gene3D G3DSA:3.90.1720.10 267 436 1.1E-41 T 13-10-2018 HCD_02090 43ce2c203ba1730775fd7b013f436de6 538 Hamap MF_01227 CTP synthase [pyrG]. 4 538 48.968 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 HCD_02090 43ce2c203ba1730775fd7b013f436de6 538 Pfam PF00117 Glutamine amidotransferase class-I 302 532 4.0E-54 T 13-10-2018 IPR017926 Glutamine amidotransferase HCD_02090 43ce2c203ba1730775fd7b013f436de6 538 SUPERFAMILY SSF52540 4 270 1.73E-113 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02090 43ce2c203ba1730775fd7b013f436de6 538 Pfam PF06418 CTP synthase N-terminus 5 267 1.0E-117 T 13-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 HCD_02090 43ce2c203ba1730775fd7b013f436de6 538 TIGRFAM TIGR00337 PyrG: CTP synthase 3 532 7.1E-250 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 HCD_02090 43ce2c203ba1730775fd7b013f436de6 538 Gene3D G3DSA:3.40.50.880 286 538 1.9E-99 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like HCD_02090 43ce2c203ba1730775fd7b013f436de6 538 SUPERFAMILY SSF52317 289 534 1.99E-76 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like HCD_02090 43ce2c203ba1730775fd7b013f436de6 538 Gene3D G3DSA:3.40.50.300 1 285 5.2E-124 T 13-10-2018 HCD_03660 886014c528a8d967f04c3490fcd17fa7 262 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 2 262 3.1E-108 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 HCD_03660 886014c528a8d967f04c3490fcd17fa7 262 SUPERFAMILY SSF63892 1 261 1.7E-67 T 13-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 HCD_03660 886014c528a8d967f04c3490fcd17fa7 262 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 262 77.774 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 HCD_03660 886014c528a8d967f04c3490fcd17fa7 262 Gene3D G3DSA:3.20.20.70 1 262 1.3E-82 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_03660 886014c528a8d967f04c3490fcd17fa7 262 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 3 260 3.2E-77 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 HCD_06850 c346fa83fba44476dcca684d8a5af068 395 Pfam PF02390 Putative methyltransferase 118 280 1.5E-46 T 13-10-2018 HCD_06850 c346fa83fba44476dcca684d8a5af068 395 SUPERFAMILY SSF53335 118 251 4.37E-25 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_06850 c346fa83fba44476dcca684d8a5af068 395 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 104 291 1.1E-57 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 HCD_06850 c346fa83fba44476dcca684d8a5af068 395 Gene3D G3DSA:3.40.50.150 79 283 1.5E-43 T 13-10-2018 HCD_06850 c346fa83fba44476dcca684d8a5af068 395 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 54 285 24.635 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 HCD_05635 90cdaf94e6427c4f36eb4bb1849a3ea6 264 Pfam PF05211 Neuraminyllactose-binding hemagglutinin precursor (NLBH) 38 261 1.4E-68 T 13-10-2018 IPR007876 Neuraminyllactose-binding hemagglutinin GO:0009279 HCD_05635 90cdaf94e6427c4f36eb4bb1849a3ea6 264 SUPERFAMILY SSF159594 31 261 6.8E-66 T 13-10-2018 HCD_05635 90cdaf94e6427c4f36eb4bb1849a3ea6 264 PIRSF PIRSF019714 1 263 4.4E-115 T 13-10-2018 IPR007876 Neuraminyllactose-binding hemagglutinin GO:0009279 HCD_05635 90cdaf94e6427c4f36eb4bb1849a3ea6 264 Gene3D G3DSA:3.30.160.180 34 264 4.0E-61 T 13-10-2018 IPR038531 Neuraminyllactose-binding hemagglutinin superfamily HCD_00040 2713bb837d8ac5142b6d9df673f7efa4 115 Gene3D G3DSA:2.30.33.40 1 90 1.9E-25 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 HCD_00040 2713bb837d8ac5142b6d9df673f7efa4 115 SUPERFAMILY SSF50129 1 89 3.48E-25 T 13-10-2018 IPR011032 GroES-like superfamily HCD_00040 2713bb837d8ac5142b6d9df673f7efa4 115 Hamap MF_00580 10 kDa chaperonin [groS]. 2 90 20.918 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 HCD_00040 2713bb837d8ac5142b6d9df673f7efa4 115 PRINTS PR00297 10kDa chaperonin signature 25 46 7.1E-23 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 HCD_00040 2713bb837d8ac5142b6d9df673f7efa4 115 PRINTS PR00297 10kDa chaperonin signature 3 18 7.1E-23 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 HCD_00040 2713bb837d8ac5142b6d9df673f7efa4 115 PRINTS PR00297 10kDa chaperonin signature 55 67 7.1E-23 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 HCD_00040 2713bb837d8ac5142b6d9df673f7efa4 115 PRINTS PR00297 10kDa chaperonin signature 76 89 7.1E-23 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 HCD_00040 2713bb837d8ac5142b6d9df673f7efa4 115 Pfam PF00166 Chaperonin 10 Kd subunit 2 89 4.5E-26 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 HCD_00040 2713bb837d8ac5142b6d9df673f7efa4 115 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 13-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 HCD_00040 2713bb837d8ac5142b6d9df673f7efa4 115 SMART SM00883 2 89 6.9E-39 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 HCD_03240 b3e3545d02be68262da37f71aafcc01a 547 Pfam PF02652 L-lactate permease 15 535 2.0E-230 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 HCD_03240 b3e3545d02be68262da37f71aafcc01a 547 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 4 538 9.4E-248 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 HCD_08455 551b2e158264291cd61478420c853527 226 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 13 216 1.8E-40 T 13-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 HCD_08455 551b2e158264291cd61478420c853527 226 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 8 225 8.0E-66 T 13-10-2018 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 HCD_08455 551b2e158264291cd61478420c853527 226 Gene3D G3DSA:3.40.50.1360 2 225 9.1E-53 T 13-10-2018 HCD_08455 551b2e158264291cd61478420c853527 226 SUPERFAMILY SSF100950 4 218 1.85E-44 T 13-10-2018 IPR037171 NagB/RpiA transferase-like HCD_05180 6bba6c7e170e4a01f4537e65985082fd 642 Pfam PF07664 Ferrous iron transport protein B C terminus 393 445 9.4E-17 T 13-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 HCD_05180 6bba6c7e170e4a01f4537e65985082fd 642 Pfam PF07670 Nucleoside recognition 289 382 3.2E-13 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 HCD_05180 6bba6c7e170e4a01f4537e65985082fd 642 Pfam PF07670 Nucleoside recognition 450 612 3.8E-34 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 HCD_05180 6bba6c7e170e4a01f4537e65985082fd 642 SUPERFAMILY SSF52540 6 170 5.43E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_05180 6bba6c7e170e4a01f4537e65985082fd 642 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 609 3.1E-213 T 13-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 HCD_05180 6bba6c7e170e4a01f4537e65985082fd 642 Gene3D G3DSA:3.40.50.300 5 195 1.7E-45 T 13-10-2018 HCD_05180 6bba6c7e170e4a01f4537e65985082fd 642 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 137 1.0E-11 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 HCD_05180 6bba6c7e170e4a01f4537e65985082fd 642 Pfam PF02421 Ferrous iron transport protein B 5 151 2.4E-59 T 13-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 HCD_06685 b3f7118bc4fc47651780546ff5cab276 91 Pfam PF11582 Protein of unknown function (DUF3240) 3 85 1.4E-8 T 13-10-2018 IPR021634 Protein of unknown function DUF3240 HCD_06685 b3f7118bc4fc47651780546ff5cab276 91 Gene3D G3DSA:3.30.70.120 2 89 6.7E-8 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal HCD_07495 f3373a9479f3d37c44d0c9c1a62035fd 457 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 337 3.2E-81 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 HCD_07495 f3373a9479f3d37c44d0c9c1a62035fd 457 Pfam PF00289 Biotin carboxylase, N-terminal domain 15 123 1.8E-37 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 HCD_07495 f3373a9479f3d37c44d0c9c1a62035fd 457 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 166 180 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 HCD_07495 f3373a9479f3d37c44d0c9c1a62035fd 457 SUPERFAMILY SSF56059 96 360 1.4E-66 T 13-10-2018 HCD_07495 f3373a9479f3d37c44d0c9c1a62035fd 457 Pfam PF02785 Biotin carboxylase C-terminal domain 349 455 6.1E-40 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 HCD_07495 f3373a9479f3d37c44d0c9c1a62035fd 457 SMART SM00878 349 454 4.0E-62 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 HCD_07495 f3373a9479f3d37c44d0c9c1a62035fd 457 SUPERFAMILY SSF51246 344 455 9.42E-44 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 HCD_07495 f3373a9479f3d37c44d0c9c1a62035fd 457 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 15 456 1.8E-195 T 13-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 HCD_07495 f3373a9479f3d37c44d0c9c1a62035fd 457 SUPERFAMILY SSF52440 12 126 7.19E-41 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily HCD_07495 f3373a9479f3d37c44d0c9c1a62035fd 457 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 300 307 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 HCD_07495 f3373a9479f3d37c44d0c9c1a62035fd 457 Gene3D G3DSA:3.30.470.130 2 457 1.7E-185 T 13-10-2018 HCD_00785 8e8ca7b65c6b87ac8cb501c12363d3ad 152 Pfam PF01668 SmpB protein 4 147 4.9E-49 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 HCD_00785 8e8ca7b65c6b87ac8cb501c12363d3ad 152 Gene3D G3DSA:2.40.280.10 1 126 3.0E-40 T 13-10-2018 IPR023620 Small protein B HCD_00785 8e8ca7b65c6b87ac8cb501c12363d3ad 152 Hamap MF_00023 SsrA-binding protein [smpB]. 1 152 57.253 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 HCD_00785 8e8ca7b65c6b87ac8cb501c12363d3ad 152 ProSitePatterns PS01317 SsrA-binding protein. 22 34 - T 13-10-2018 IPR020081 SsrA-binding protein, conserved site HCD_00785 8e8ca7b65c6b87ac8cb501c12363d3ad 152 TIGRFAM TIGR00086 smpB: SsrA-binding protein 4 146 8.1E-54 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 HCD_00785 8e8ca7b65c6b87ac8cb501c12363d3ad 152 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 4 129 1.0E-55 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 HCD_00785 8e8ca7b65c6b87ac8cb501c12363d3ad 152 SUPERFAMILY SSF74982 2 129 2.35E-41 T 13-10-2018 IPR023620 Small protein B HCD_03475 b3f3212dfe3cc05410dc9fcee3055c5f 366 Hamap MF_02089 Epoxyqueuosine reductase QueH [queH]. 1 183 30.681 T 13-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 HCD_03475 b3f3212dfe3cc05410dc9fcee3055c5f 366 Pfam PF02677 Uncharacterized BCR, COG1636 1 180 6.3E-51 T 13-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 Pfam PF00072 Response regulator receiver domain 681 794 6.9E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 379 518 1.2E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 Gene3D G3DSA:3.40.50.2300 664 801 3.2E-32 T 13-10-2018 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 264 331 4.6E-18 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 SUPERFAMILY SSF52172 678 799 8.11E-31 T 13-10-2018 IPR011006 CheY-like superfamily HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 SMART SM00073 4 101 4.1E-34 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 Gene3D G3DSA:1.20.120.160 1 150 6.3E-36 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 SMART SM01231 263 331 9.1E-20 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 SUPERFAMILY SSF50341 518 649 1.1E-31 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 Pfam PF01627 Hpt domain 6 99 4.0E-15 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 Gene3D G3DSA:2.30.30.40 519 646 2.0E-38 T 13-10-2018 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 497 3.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 473 3.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 516 3.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 435 3.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 SMART SM00448 679 794 9.7E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 Gene3D G3DSA:2.40.50.180 542 605 2.0E-38 T 13-10-2018 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 Gene3D G3DSA:3.30.565.10 332 518 2.9E-57 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 SMART SM00260 511 650 2.0E-43 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 SUPERFAMILY SSF47226 3 113 2.88E-29 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 SUPERFAMILY SSF55874 334 517 7.47E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 Gene3D G3DSA:1.10.287.560 263 331 1.2E-21 T 13-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 SUPERFAMILY SSF47384 264 332 1.02E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 Pfam PF01584 CheW-like domain 523 652 3.8E-23 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 HCD_02695 4e14688c8d826a1350fe0c43f08c57c0 805 SMART SM00387 376 519 1.2E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase HCD_00255 4846a7b9b29dd492360e481627d548d7 331 Gene3D G3DSA:3.40.47.10 1 330 2.7E-119 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 HCD_00255 4846a7b9b29dd492360e481627d548d7 331 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 3 328 66.382 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 HCD_00255 4846a7b9b29dd492360e481627d548d7 331 SUPERFAMILY SSF53901 10 327 1.57E-64 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 HCD_00255 4846a7b9b29dd492360e481627d548d7 331 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 109 188 3.1E-29 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 HCD_00255 4846a7b9b29dd492360e481627d548d7 331 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 4 328 2.8E-145 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 HCD_00255 4846a7b9b29dd492360e481627d548d7 331 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 239 327 1.7E-36 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 HCD_06690 ad339afd422ee8d00299238c77404901 1021 Gene3D G3DSA:3.30.70.1440 657 854 1.8E-260 T 13-10-2018 HCD_06690 ad339afd422ee8d00299238c77404901 1021 Gene3D G3DSA:3.30.70.1320 136 323 1.8E-260 T 13-10-2018 HCD_06690 ad339afd422ee8d00299238c77404901 1021 Gene3D G3DSA:1.20.1640.10 14 498 1.8E-260 T 13-10-2018 HCD_06690 ad339afd422ee8d00299238c77404901 1021 SUPERFAMILY SSF82693 139 323 2.09E-15 T 13-10-2018 HCD_06690 ad339afd422ee8d00299238c77404901 1021 Gene3D G3DSA:3.30.70.1430 42 804 1.8E-260 T 13-10-2018 HCD_06690 ad339afd422ee8d00299238c77404901 1021 SUPERFAMILY SSF82866 289 491 2.62E-39 T 13-10-2018 HCD_06690 ad339afd422ee8d00299238c77404901 1021 Gene3D G3DSA:3.30.2090.10 708 796 1.8E-260 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains HCD_06690 ad339afd422ee8d00299238c77404901 1021 Gene3D G3DSA:1.20.1640.10 499 1009 1.8E-260 T 13-10-2018 HCD_06690 ad339afd422ee8d00299238c77404901 1021 Gene3D G3DSA:3.30.70.1430 553 656 1.8E-260 T 13-10-2018 HCD_06690 ad339afd422ee8d00299238c77404901 1021 Pfam PF00873 AcrB/AcrD/AcrF family 5 1012 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_06690 ad339afd422ee8d00299238c77404901 1021 SUPERFAMILY SSF82866 790 1015 2.35E-53 T 13-10-2018 HCD_06690 ad339afd422ee8d00299238c77404901 1021 SUPERFAMILY SSF82714 183 261 5.36E-9 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains HCD_06690 ad339afd422ee8d00299238c77404901 1021 SUPERFAMILY SSF82693 42 127 3.92E-17 T 13-10-2018 HCD_06690 ad339afd422ee8d00299238c77404901 1021 SUPERFAMILY SSF82714 709 791 4.32E-8 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains HCD_06690 ad339afd422ee8d00299238c77404901 1021 Gene3D G3DSA:3.30.2090.10 179 269 1.8E-260 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains HCD_06690 ad339afd422ee8d00299238c77404901 1021 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 8.3E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_06690 ad339afd422ee8d00299238c77404901 1021 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 8.3E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_06690 ad339afd422ee8d00299238c77404901 1021 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 8.3E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_06690 ad339afd422ee8d00299238c77404901 1021 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 8.3E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_06690 ad339afd422ee8d00299238c77404901 1021 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 8.3E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_06690 ad339afd422ee8d00299238c77404901 1021 PRINTS PR00702 Acriflavin resistance protein family signature 536 553 8.3E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_06690 ad339afd422ee8d00299238c77404901 1021 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 8.3E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_06690 ad339afd422ee8d00299238c77404901 1021 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 8.3E-42 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_06690 ad339afd422ee8d00299238c77404901 1021 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1017 1.1E-274 T 13-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 HCD_06690 ad339afd422ee8d00299238c77404901 1021 SUPERFAMILY SSF82693 550 650 3.61E-6 T 13-10-2018 HCD_04425 ebe49b7dfd37c1070ff533d2c715096b 186 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 169 31.546 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 HCD_04425 ebe49b7dfd37c1070ff533d2c715096b 186 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 HCD_04425 ebe49b7dfd37c1070ff533d2c715096b 186 Pfam PF01195 Peptidyl-tRNA hydrolase 3 176 1.8E-50 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 HCD_04425 ebe49b7dfd37c1070ff533d2c715096b 186 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 1 177 1.4E-62 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 HCD_04425 ebe49b7dfd37c1070ff533d2c715096b 186 Gene3D G3DSA:3.40.50.1470 1 181 9.0E-54 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 HCD_04425 ebe49b7dfd37c1070ff533d2c715096b 186 SUPERFAMILY SSF53178 1 175 5.75E-53 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 HCD_04425 ebe49b7dfd37c1070ff533d2c715096b 186 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 102 112 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 HCD_01890 fb5bac4236d808c26031bd114ec1f05c 486 PIRSF PIRSF002869 1 484 8.7E-113 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ HCD_01890 fb5bac4236d808c26031bd114ec1f05c 486 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 6 471 5.3E-104 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ HCD_01890 fb5bac4236d808c26031bd114ec1f05c 486 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 2 479 17.034 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ HCD_01890 fb5bac4236d808c26031bd114ec1f05c 486 PRINTS PR01806 Virulence factor MviN signature 366 385 9.6E-57 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ HCD_01890 fb5bac4236d808c26031bd114ec1f05c 486 PRINTS PR01806 Virulence factor MviN signature 148 169 9.6E-57 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ HCD_01890 fb5bac4236d808c26031bd114ec1f05c 486 PRINTS PR01806 Virulence factor MviN signature 32 51 9.6E-57 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ HCD_01890 fb5bac4236d808c26031bd114ec1f05c 486 PRINTS PR01806 Virulence factor MviN signature 268 294 9.6E-57 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ HCD_01890 fb5bac4236d808c26031bd114ec1f05c 486 PRINTS PR01806 Virulence factor MviN signature 51 67 9.6E-57 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ HCD_01890 fb5bac4236d808c26031bd114ec1f05c 486 PRINTS PR01806 Virulence factor MviN signature 418 435 9.6E-57 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ HCD_01890 fb5bac4236d808c26031bd114ec1f05c 486 PRINTS PR01806 Virulence factor MviN signature 124 148 9.6E-57 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ HCD_01890 fb5bac4236d808c26031bd114ec1f05c 486 Pfam PF03023 MviN-like protein 27 483 3.5E-130 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ HCD_01860 0be64ae6ea51e44898d1d052b0ee7ea6 159 Gene3D G3DSA:3.30.420.10 2 155 1.5E-43 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 HCD_01860 0be64ae6ea51e44898d1d052b0ee7ea6 159 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 112 147 - T 13-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 HCD_01860 0be64ae6ea51e44898d1d052b0ee7ea6 159 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 3 150 1.4E-64 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 HCD_01860 0be64ae6ea51e44898d1d052b0ee7ea6 159 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 4 17 4.4E-21 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 HCD_01860 0be64ae6ea51e44898d1d052b0ee7ea6 159 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 106 125 4.4E-21 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 HCD_01860 0be64ae6ea51e44898d1d052b0ee7ea6 159 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 60 76 4.4E-21 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 HCD_01860 0be64ae6ea51e44898d1d052b0ee7ea6 159 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 4.4E-21 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 HCD_01860 0be64ae6ea51e44898d1d052b0ee7ea6 159 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 3 157 2.8E-72 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 HCD_01860 0be64ae6ea51e44898d1d052b0ee7ea6 159 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 153 41.539 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 HCD_01860 0be64ae6ea51e44898d1d052b0ee7ea6 159 SUPERFAMILY SSF53098 1 155 3.54E-44 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily HCD_06810 26777e21184ee465587cb10e65d8b234 353 Gene3D G3DSA:3.30.470.20 124 313 1.8E-60 T 13-10-2018 HCD_06810 26777e21184ee465587cb10e65d8b234 353 Gene3D G3DSA:3.30.1490.20 146 211 1.8E-60 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 HCD_06810 26777e21184ee465587cb10e65d8b234 353 SUPERFAMILY SSF52440 3 128 7.29E-24 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily HCD_06810 26777e21184ee465587cb10e65d8b234 353 SUPERFAMILY SSF56059 129 319 1.22E-35 T 13-10-2018 HCD_06810 26777e21184ee465587cb10e65d8b234 353 Pfam PF01820 D-ala D-ala ligase N-terminus 4 118 7.9E-17 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_06810 26777e21184ee465587cb10e65d8b234 353 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 285 312 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_06810 26777e21184ee465587cb10e65d8b234 353 Pfam PF07478 D-ala D-ala ligase C-terminus 138 313 3.3E-32 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_06810 26777e21184ee465587cb10e65d8b234 353 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 1 338 27.716 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_06810 26777e21184ee465587cb10e65d8b234 353 Gene3D G3DSA:3.40.50.20 1 118 3.7E-36 T 13-10-2018 HCD_06810 26777e21184ee465587cb10e65d8b234 353 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 3 337 3.1E-90 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_06810 26777e21184ee465587cb10e65d8b234 353 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 96 107 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_04885 b0c88110fa25502cd4d0c41523069bde 148 Hamap MF_00476 Nickel-responsive regulator [nikR]. 10 143 27.674 T 13-10-2018 IPR022988 Nickel-responsive transcriptional regulator NikR GO:0003677|GO:0006355|GO:0010045|GO:0016151 HCD_04885 b0c88110fa25502cd4d0c41523069bde 148 SUPERFAMILY SSF47598 9 56 1.67E-11 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 HCD_04885 b0c88110fa25502cd4d0c41523069bde 148 SUPERFAMILY SSF55021 64 140 1.58E-24 T 13-10-2018 HCD_04885 b0c88110fa25502cd4d0c41523069bde 148 Pfam PF08753 NikR C terminal nickel binding domain 65 139 2.0E-30 T 13-10-2018 IPR014864 Transcription factor, NikR, nickel binding C-terminal HCD_04885 b0c88110fa25502cd4d0c41523069bde 148 Pfam PF01402 Ribbon-helix-helix protein, copG family 12 49 2.6E-10 T 13-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 HCD_04885 b0c88110fa25502cd4d0c41523069bde 148 Gene3D G3DSA:3.30.70.1150 52 148 7.0E-40 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal HCD_04885 b0c88110fa25502cd4d0c41523069bde 148 Gene3D G3DSA:1.10.1220.10 17 51 1.4E-16 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 HCD_02895 90c954b220af64a126540edf6cd9b162 175 SUPERFAMILY SSF82679 1 111 3.14E-32 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 HCD_02895 90c954b220af64a126540edf6cd9b162 175 SMART SM00739 120 147 5.9E-5 T 13-10-2018 IPR005824 KOW HCD_02895 90c954b220af64a126540edf6cd9b162 175 Gene3D G3DSA:3.30.70.940 1 116 2.6E-35 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 HCD_02895 90c954b220af64a126540edf6cd9b162 175 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 3 174 8.1E-66 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 HCD_02895 90c954b220af64a126540edf6cd9b162 175 Pfam PF02357 Transcription termination factor nusG 1 105 8.9E-23 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 HCD_02895 90c954b220af64a126540edf6cd9b162 175 Pfam PF00467 KOW motif 124 146 4.7E-5 T 13-10-2018 IPR005824 KOW HCD_02895 90c954b220af64a126540edf6cd9b162 175 PRINTS PR00338 Transcription termination factor NUSG signature 56 68 3.1E-18 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 HCD_02895 90c954b220af64a126540edf6cd9b162 175 PRINTS PR00338 Transcription termination factor NUSG signature 132 147 3.1E-18 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 HCD_02895 90c954b220af64a126540edf6cd9b162 175 PRINTS PR00338 Transcription termination factor NUSG signature 150 166 3.1E-18 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 HCD_02895 90c954b220af64a126540edf6cd9b162 175 ProSitePatterns PS01014 Transcription termination factor nusG signature. 157 166 - T 13-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site HCD_02895 90c954b220af64a126540edf6cd9b162 175 Gene3D G3DSA:2.30.30.30 117 174 1.7E-21 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 HCD_02895 90c954b220af64a126540edf6cd9b162 175 SUPERFAMILY SSF50104 118 174 1.0E-15 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily HCD_02895 90c954b220af64a126540edf6cd9b162 175 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 1 174 19.953 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 HCD_02895 90c954b220af64a126540edf6cd9b162 175 SMART SM00738 1 109 6.4E-42 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 HCD_03950 9863b94fb38d0b3c441a8cb320c19493 208 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 97 3.6E-28 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 HCD_03950 9863b94fb38d0b3c441a8cb320c19493 208 Gene3D G3DSA:3.10.290.10 97 193 3.7E-76 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 HCD_03950 9863b94fb38d0b3c441a8cb320c19493 208 SMART SM01390 3 97 3.9E-43 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 HCD_03950 9863b94fb38d0b3c441a8cb320c19493 208 ProSitePatterns PS00632 Ribosomal protein S4 signature. 96 120 - T 13-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_03950 9863b94fb38d0b3c441a8cb320c19493 208 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 208 7.1E-83 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 HCD_03950 9863b94fb38d0b3c441a8cb320c19493 208 Pfam PF01479 S4 domain 98 144 3.8E-19 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_03950 9863b94fb38d0b3c441a8cb320c19493 208 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 208 34.759 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 HCD_03950 9863b94fb38d0b3c441a8cb320c19493 208 SUPERFAMILY SSF55174 3 208 1.11E-64 T 13-10-2018 HCD_03950 9863b94fb38d0b3c441a8cb320c19493 208 SMART SM00363 98 157 1.5E-15 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_03950 9863b94fb38d0b3c441a8cb320c19493 208 Gene3D G3DSA:1.10.1050.10 6 208 3.7E-76 T 13-10-2018 HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 SMART SM00962 94 288 1.7E-104 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 Pfam PF00448 SRP54-type protein, GTPase domain 94 287 1.7E-72 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 Pfam PF02978 Signal peptide binding domain 319 419 4.0E-30 T 13-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 421 3.4E-163 T 13-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 SUPERFAMILY SSF47364 1 82 1.7E-13 T 13-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 SMART SM00963 1 79 1.0E-11 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 433 31.318 T 13-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 SMART SM00382 93 288 1.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 261 274 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 Gene3D G3DSA:1.20.120.140 5 298 8.0E-97 T 13-10-2018 HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 SUPERFAMILY SSF52540 89 289 1.08E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 Gene3D G3DSA:3.40.50.300 83 277 8.0E-97 T 13-10-2018 HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 Gene3D G3DSA:1.10.260.30 301 424 5.1E-38 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 SUPERFAMILY SSF47446 290 423 3.53E-42 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 HCD_07870 c2866d4ee03ab10df4a172493eb19521 447 Pfam PF02881 SRP54-type protein, helical bundle domain 5 74 1.5E-8 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 HCD_06765 62f116024e7b41b194574d9aa317279f 273 Gene3D G3DSA:3.90.550.10 1 273 1.1E-84 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_06765 62f116024e7b41b194574d9aa317279f 273 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 2 264 8.6E-125 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 HCD_06765 62f116024e7b41b194574d9aa317279f 273 Pfam PF00483 Nucleotidyl transferase 9 268 1.5E-33 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 HCD_06765 62f116024e7b41b194574d9aa317279f 273 SUPERFAMILY SSF53448 2 269 5.41E-59 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 Gene3D G3DSA:1.10.287.40 1 106 4.0E-9 T 13-10-2018 HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 415 37.294 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 PIRSF PIRSF001529 1 415 5.3E-152 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 SUPERFAMILY SSF55681 118 414 1.45E-91 T 13-10-2018 HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 109 7.7E-18 T 13-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 Gene3D G3DSA:3.30.930.10 107 415 4.4E-109 T 13-10-2018 HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 415 1.1E-170 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 220 398 8.2E-35 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 SUPERFAMILY SSF46589 1 114 5.23E-17 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 7.0E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 7.0E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 7.0E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 7.0E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 HCD_04340 847fc91d00614b328bc4dc7f762fcdb8 415 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 7.0E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 HCD_06000 7047ce30d93780059c21d54299e46c33 258 Gene3D G3DSA:1.10.3680.10 74 184 4.5E-9 T 13-10-2018 IPR029024 TerB-like HCD_06000 7047ce30d93780059c21d54299e46c33 258 Pfam PF05099 Tellurite resistance protein TerB 91 173 1.6E-8 T 13-10-2018 IPR007791 Co-chaperone DjlA, N-terminal HCD_06000 7047ce30d93780059c21d54299e46c33 258 SUPERFAMILY SSF158682 97 181 1.27E-8 T 13-10-2018 IPR029024 TerB-like HCD_02435 447671e3e5d956d0cd310bdac0a61de9 355 SUPERFAMILY SSF56349 80 344 2.0E-31 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 HCD_02435 447671e3e5d956d0cd310bdac0a61de9 355 Pfam PF00589 Phage integrase family 168 336 6.5E-19 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 HCD_02435 447671e3e5d956d0cd310bdac0a61de9 355 Gene3D G3DSA:1.10.443.10 150 353 1.8E-28 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 HCD_06535 447671e3e5d956d0cd310bdac0a61de9 355 SUPERFAMILY SSF56349 80 344 2.0E-31 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 HCD_06535 447671e3e5d956d0cd310bdac0a61de9 355 Pfam PF00589 Phage integrase family 168 336 6.5E-19 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 HCD_06535 447671e3e5d956d0cd310bdac0a61de9 355 Gene3D G3DSA:1.10.443.10 150 353 1.8E-28 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 HCD_07720 e53eebb322cf159cd6804203da142a2a 405 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 62 402 1.6E-126 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 HCD_07720 e53eebb322cf159cd6804203da142a2a 405 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 2 403 6.8E-160 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 HCD_07720 e53eebb322cf159cd6804203da142a2a 405 PIRSF PIRSF000726 1 61 4.5E-23 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 HCD_07720 e53eebb322cf159cd6804203da142a2a 405 PIRSF PIRSF000726 55 405 1.4E-140 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 HCD_07720 e53eebb322cf159cd6804203da142a2a 405 SUPERFAMILY SSF53633 3 242 3.14E-73 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily HCD_07720 e53eebb322cf159cd6804203da142a2a 405 Pfam PF13840 ACT domain 337 399 1.0E-15 T 13-10-2018 IPR027795 CASTOR, ACT domain HCD_07720 e53eebb322cf159cd6804203da142a2a 405 SUPERFAMILY SSF55021 250 327 3.93E-16 T 13-10-2018 HCD_07720 e53eebb322cf159cd6804203da142a2a 405 SUPERFAMILY SSF55021 330 404 2.16E-23 T 13-10-2018 HCD_07720 e53eebb322cf159cd6804203da142a2a 405 Pfam PF00696 Amino acid kinase family 2 225 2.6E-53 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 HCD_07720 e53eebb322cf159cd6804203da142a2a 405 Pfam PF01842 ACT domain 271 326 2.6E-12 T 13-10-2018 IPR002912 ACT domain HCD_07720 e53eebb322cf159cd6804203da142a2a 405 Gene3D G3DSA:3.40.1160.10 1 246 8.5E-88 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily HCD_07720 e53eebb322cf159cd6804203da142a2a 405 Gene3D G3DSA:3.30.2130.10 247 405 9.2E-56 T 13-10-2018 HCD_07720 e53eebb322cf159cd6804203da142a2a 405 ProSitePatterns PS00324 Aspartokinase signature. 4 12 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 HCD_06615 0f2464606258dec37319eb9699064cd6 511 Gene3D G3DSA:3.40.50.10950 197 509 8.6E-138 T 13-10-2018 HCD_06615 0f2464606258dec37319eb9699064cd6 511 SUPERFAMILY SSF53659 190 509 7.81E-97 T 13-10-2018 HCD_06615 0f2464606258dec37319eb9699064cd6 511 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 205 505 9.9E-128 T 13-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 HCD_06615 0f2464606258dec37319eb9699064cd6 511 Gene3D G3DSA:3.40.50.10750 329 482 8.6E-138 T 13-10-2018 HCD_06615 0f2464606258dec37319eb9699064cd6 511 Pfam PF01515 Phosphate acetyl/butaryl transferase 190 506 7.9E-130 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 HCD_07070 a156eac4c3faf550cfcfb102482fa849 290 SUPERFAMILY SSF55729 129 289 1.03E-56 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase HCD_07070 a156eac4c3faf550cfcfb102482fa849 290 Gene3D G3DSA:3.40.630.30 2 284 4.5E-92 T 13-10-2018 HCD_07070 a156eac4c3faf550cfcfb102482fa849 290 PIRSF PIRSF018688 1 290 4.0E-106 T 13-10-2018 IPR016732 Uncharacterised conserved protein UCP018688 HCD_07070 a156eac4c3faf550cfcfb102482fa849 290 Gene3D G3DSA:3.40.630.30 116 282 4.5E-92 T 13-10-2018 HCD_07070 a156eac4c3faf550cfcfb102482fa849 290 SUPERFAMILY SSF55729 2 128 4.98E-29 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase HCD_07070 a156eac4c3faf550cfcfb102482fa849 290 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 25 284 5.6E-41 T 13-10-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal HCD_04745 173f520e83ca2149e8fdf1a6d33bc82a 627 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 445 594 6.1E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_04745 173f520e83ca2149e8fdf1a6d33bc82a 627 ProDom PD936484 POLYPROTEIN GLYCOPROTEIN M G2 TRANSMEMBRANE NONSTRUCTURAL MEMBRANE CONTAINS: PRECURSOR SIGNAL 331 624 0.005 T 13-10-2018 HCD_04745 173f520e83ca2149e8fdf1a6d33bc82a 627 SMART SM00283 365 626 1.8E-32 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_04745 173f520e83ca2149e8fdf1a6d33bc82a 627 SUPERFAMILY SSF58104 318 627 1.31E-56 T 13-10-2018 HCD_04745 173f520e83ca2149e8fdf1a6d33bc82a 627 Pfam PF02743 Cache domain 38 258 1.2E-18 T 13-10-2018 IPR033479 Double Cache domain 1 HCD_04745 173f520e83ca2149e8fdf1a6d33bc82a 627 Gene3D G3DSA:3.30.450.20 80 171 4.3E-31 T 13-10-2018 HCD_04745 173f520e83ca2149e8fdf1a6d33bc82a 627 SUPERFAMILY SSF103190 95 175 7.06E-9 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily HCD_04745 173f520e83ca2149e8fdf1a6d33bc82a 627 Gene3D G3DSA:1.10.287.950 298 627 1.3E-56 T 13-10-2018 HCD_04745 173f520e83ca2149e8fdf1a6d33bc82a 627 Gene3D G3DSA:3.30.450.20 172 269 4.3E-31 T 13-10-2018 HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 Gene3D G3DSA:2.40.128.130 1009 1342 7.1E-22 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 SUPERFAMILY SSF103515 1045 1342 2.62E-20 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 SMART SM00869 1073 1330 4.7E-11 T 13-10-2018 IPR005546 Autotransporter beta-domain HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 Pfam PF02691 Vacuolating cyotoxin 59 1054 0.0 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 6 24 7.1E-109 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 243 270 7.1E-109 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 469 489 7.1E-109 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 570 592 7.1E-109 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 521 545 7.1E-109 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 1012 1032 7.1E-109 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 643 668 7.1E-109 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 409 429 7.1E-109 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 216 238 7.1E-109 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01900 0cda25b766a3c3fac6a169c6f5a693db 1342 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 944 1342 3.9E-11 T 13-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 HCD_06840 8ee2c479d7c10ca3bb185d9c03d8170f 326 Gene3D G3DSA:3.30.2350.10 78 307 1.4E-59 T 13-10-2018 HCD_06840 8ee2c479d7c10ca3bb185d9c03d8170f 326 SMART SM00363 12 75 3.6E-7 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_06840 8ee2c479d7c10ca3bb185d9c03d8170f 326 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 10 303 1.3E-65 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_06840 8ee2c479d7c10ca3bb185d9c03d8170f 326 Gene3D G3DSA:3.10.290.10 8 64 2.0E-8 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 HCD_06840 8ee2c479d7c10ca3bb185d9c03d8170f 326 SUPERFAMILY SSF55174 12 100 5.72E-7 T 13-10-2018 HCD_06840 8ee2c479d7c10ca3bb185d9c03d8170f 326 SUPERFAMILY SSF55120 75 304 1.76E-58 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_06840 8ee2c479d7c10ca3bb185d9c03d8170f 326 Pfam PF00849 RNA pseudouridylate synthase 86 244 3.0E-25 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_06840 8ee2c479d7c10ca3bb185d9c03d8170f 326 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 132 146 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_04130 6b92eb5e98973537f1c44aecc7f75733 816 Pfam PF02384 N-6 DNA Methylase 134 452 3.1E-110 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 HCD_04130 6b92eb5e98973537f1c44aecc7f75733 816 SUPERFAMILY SSF53335 6 453 2.67E-116 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_04130 6b92eb5e98973537f1c44aecc7f75733 816 Pfam PF12161 HsdM N-terminal domain 8 122 9.1E-18 T 13-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain HCD_04130 6b92eb5e98973537f1c44aecc7f75733 816 Gene3D G3DSA:1.20.1260.30 1 64 4.6E-17 T 13-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily HCD_04130 6b92eb5e98973537f1c44aecc7f75733 816 TIGRFAM TIGR00497 hsdM: type I restriction-modification system, M subunit 78 453 5.4E-73 T 13-10-2018 IPR004546 Restriction endonuclease, type I, HsdM GO:0003677|GO:0009007|GO:0009307 HCD_04130 6b92eb5e98973537f1c44aecc7f75733 816 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 262 268 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_04130 6b92eb5e98973537f1c44aecc7f75733 816 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 158 174 1.8E-18 T 13-10-2018 HCD_04130 6b92eb5e98973537f1c44aecc7f75733 816 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 303 327 1.8E-18 T 13-10-2018 HCD_04130 6b92eb5e98973537f1c44aecc7f75733 816 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 186 200 1.8E-18 T 13-10-2018 HCD_04130 6b92eb5e98973537f1c44aecc7f75733 816 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 259 271 1.8E-18 T 13-10-2018 HCD_04130 6b92eb5e98973537f1c44aecc7f75733 816 Gene3D G3DSA:3.40.50.150 135 436 2.2E-87 T 13-10-2018 HCD_04310 9ca8771282ae09e662fee73dadfa5d5b 194 Pfam PF02223 Thymidylate kinase 5 183 3.5E-44 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 HCD_04310 9ca8771282ae09e662fee73dadfa5d5b 194 SUPERFAMILY SSF52540 1 192 6.34E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04310 9ca8771282ae09e662fee73dadfa5d5b 194 Gene3D G3DSA:3.40.50.300 1 192 1.0E-42 T 13-10-2018 HCD_04310 9ca8771282ae09e662fee73dadfa5d5b 194 Hamap MF_00165 Thymidylate kinase [tmk]. 1 191 20.867 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 HCD_04310 9ca8771282ae09e662fee73dadfa5d5b 194 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 1 183 1.4E-50 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 HCD_04310 9ca8771282ae09e662fee73dadfa5d5b 194 ProSitePatterns PS01331 Thymidylate kinase signature. 83 95 - T 13-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 HCD_05525 5c63a84c7a8e9be523b41ac1ccd0b0d4 208 SUPERFAMILY SSF55811 24 203 9.66E-31 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 HCD_05525 5c63a84c7a8e9be523b41ac1ccd0b0d4 208 Gene3D G3DSA:3.90.79.10 52 207 2.9E-49 T 13-10-2018 HCD_05525 5c63a84c7a8e9be523b41ac1ccd0b0d4 208 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 10 202 5.9E-67 T 13-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 HCD_03595 fb7dd1ec492efc80cd2af2178633997b 170 Gene3D G3DSA:3.30.70.790 76 170 5.3E-35 T 13-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 HCD_03595 fb7dd1ec492efc80cd2af2178633997b 170 SMART SM00988 6 71 1.8E-6 T 13-10-2018 IPR004029 UreE urease accessory, N-terminal HCD_03595 fb7dd1ec492efc80cd2af2178633997b 170 PIRSF PIRSF036402 1 158 2.3E-39 T 13-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 HCD_03595 fb7dd1ec492efc80cd2af2178633997b 170 SUPERFAMILY SSF69287 1 75 9.68E-15 T 13-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily HCD_03595 fb7dd1ec492efc80cd2af2178633997b 170 Hamap MF_00822 Urease accessory protein UreE [ureE]. 1 152 18.143 T 13-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 HCD_03595 fb7dd1ec492efc80cd2af2178633997b 170 SUPERFAMILY SSF69737 79 143 3.92E-12 T 13-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 HCD_03595 fb7dd1ec492efc80cd2af2178633997b 170 Gene3D G3DSA:2.60.260.20 1 75 3.7E-29 T 13-10-2018 HCD_03595 fb7dd1ec492efc80cd2af2178633997b 170 Pfam PF05194 UreE urease accessory protein, C-terminal domain 79 139 2.6E-7 T 13-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 HCD_03595 fb7dd1ec492efc80cd2af2178633997b 170 Pfam PF02814 UreE urease accessory protein, N-terminal domain 18 70 8.1E-11 T 13-10-2018 IPR004029 UreE urease accessory, N-terminal HCD_02310 6d278d57d5fd412ec2b02ca9fb7f5079 369 Pfam PF01702 Queuine tRNA-ribosyltransferase 128 362 2.2E-85 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 HCD_02310 6d278d57d5fd412ec2b02ca9fb7f5079 369 SUPERFAMILY SSF51713 2 366 2.88E-142 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 HCD_02310 6d278d57d5fd412ec2b02ca9fb7f5079 369 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 365 52.359 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 HCD_02310 6d278d57d5fd412ec2b02ca9fb7f5079 369 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 367 1.9E-158 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 HCD_02310 6d278d57d5fd412ec2b02ca9fb7f5079 369 Gene3D G3DSA:3.20.20.105 1 369 1.4E-155 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 HCD_02310 6d278d57d5fd412ec2b02ca9fb7f5079 369 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 367 7.8E-169 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 Gene3D G3DSA:3.40.120.10 1 145 6.7E-43 T 13-10-2018 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 262 370 4.1E-20 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 SUPERFAMILY SSF53738 157 257 1.14E-24 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 209 222 4.4E-18 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 175 194 4.4E-18 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 96 110 4.4E-18 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 4.4E-18 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 SUPERFAMILY SSF53738 3 181 6.67E-34 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 Gene3D G3DSA:3.40.120.10 177 254 1.1E-24 T 13-10-2018 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 97 106 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 SUPERFAMILY SSF55957 372 461 1.64E-16 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 Gene3D G3DSA:3.30.310.50 373 462 1.6E-23 T 13-10-2018 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 SUPERFAMILY SSF53738 262 358 9.22E-24 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 Gene3D G3DSA:3.40.120.10 258 371 2.3E-27 T 13-10-2018 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 401 459 6.6E-9 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 159 254 5.2E-20 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_00480 87a276eeae906820ff3074e49c1b9a10 462 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 135 3.7E-32 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 HCD_06115 125d74b3fb2983079f2652a11559efe6 290 Gene3D G3DSA:2.30.330.10 196 290 1.2E-26 T 13-10-2018 IPR036429 SpoA-like superfamily HCD_06115 125d74b3fb2983079f2652a11559efe6 290 SUPERFAMILY SSF103039 2 161 7.85E-12 T 13-10-2018 IPR028976 CheC-like superfamily HCD_06115 125d74b3fb2983079f2652a11559efe6 290 PRINTS PR00956 Flagellar motor switch protein FliN signature 242 255 5.8E-20 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 HCD_06115 125d74b3fb2983079f2652a11559efe6 290 PRINTS PR00956 Flagellar motor switch protein FliN signature 226 242 5.8E-20 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 HCD_06115 125d74b3fb2983079f2652a11559efe6 290 PRINTS PR00956 Flagellar motor switch protein FliN signature 255 270 5.8E-20 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 HCD_06115 125d74b3fb2983079f2652a11559efe6 290 PRINTS PR00956 Flagellar motor switch protein FliN signature 209 225 5.8E-20 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 HCD_06115 125d74b3fb2983079f2652a11559efe6 290 SUPERFAMILY SSF101801 206 288 1.07E-20 T 13-10-2018 IPR036429 SpoA-like superfamily HCD_06115 125d74b3fb2983079f2652a11559efe6 290 Gene3D G3DSA:3.40.1550.10 1 174 5.4E-10 T 13-10-2018 IPR028976 CheC-like superfamily HCD_06115 125d74b3fb2983079f2652a11559efe6 290 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 206 281 7.6E-27 T 13-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 HCD_06115 125d74b3fb2983079f2652a11559efe6 290 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 210 278 5.7E-19 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) HCD_07365 d1a13868818834b2be11e41c723c68c6 173 SUPERFAMILY SSF81573 87 144 3.53E-5 T 13-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily HCD_07365 d1a13868818834b2be11e41c723c68c6 173 Pfam PF00430 ATP synthase B/B' CF(0) 34 148 8.5E-11 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 HCD_07365 d1a13868818834b2be11e41c723c68c6 173 Hamap MF_01398 ATP synthase subunit b [atpF]. 24 162 9.326 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 HCD_01875 1761db603a4850cd7f8d0c8736f2a35b 1152 SMART SM00869 883 1140 1.7E-10 T 13-10-2018 IPR005546 Autotransporter beta-domain HCD_01875 1761db603a4850cd7f8d0c8736f2a35b 1152 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 40 61 6.7E-26 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01875 1761db603a4850cd7f8d0c8736f2a35b 1152 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 822 842 6.7E-26 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01875 1761db603a4850cd7f8d0c8736f2a35b 1152 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 125 147 6.7E-26 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01875 1761db603a4850cd7f8d0c8736f2a35b 1152 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 233 258 6.7E-26 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01875 1761db603a4850cd7f8d0c8736f2a35b 1152 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 190 206 6.7E-26 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01875 1761db603a4850cd7f8d0c8736f2a35b 1152 Gene3D G3DSA:2.40.128.130 819 1152 1.5E-21 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily HCD_01875 1761db603a4850cd7f8d0c8736f2a35b 1152 SUPERFAMILY SSF103515 854 1152 3.53E-20 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily HCD_01875 1761db603a4850cd7f8d0c8736f2a35b 1152 Pfam PF02691 Vacuolating cyotoxin 262 864 4.2E-188 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01875 1761db603a4850cd7f8d0c8736f2a35b 1152 Pfam PF02691 Vacuolating cyotoxin 35 256 5.0E-52 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_00365 454a73dd3dd9d0ed297c416fd925ca99 348 Gene3D G3DSA:1.10.3720.10 107 339 5.1E-15 T 13-10-2018 IPR035906 MetI-like superfamily HCD_00365 454a73dd3dd9d0ed297c416fd925ca99 348 SUPERFAMILY SSF161098 115 332 1.24E-14 T 13-10-2018 IPR035906 MetI-like superfamily HCD_00365 454a73dd3dd9d0ed297c416fd925ca99 348 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 136 343 3.7E-34 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 HCD_04795 6532ec67b6265415407f6cbd12403927 275 Gene3D G3DSA:3.40.50.720 2 163 7.2E-36 T 13-10-2018 HCD_04795 6532ec67b6265415407f6cbd12403927 275 SUPERFAMILY SSF48179 169 274 1.47E-33 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 HCD_04795 6532ec67b6265415407f6cbd12403927 275 Gene3D G3DSA:1.10.3660.10 167 274 1.2E-35 T 13-10-2018 HCD_04795 6532ec67b6265415407f6cbd12403927 275 SUPERFAMILY SSF51735 3 163 1.38E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_04795 6532ec67b6265415407f6cbd12403927 275 Pfam PF02153 Prephenate dehydrogenase 15 267 6.8E-90 T 13-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 HCD_04170 44124025736a39a08f0acfa0f6e9b729 467 Gene3D G3DSA:3.40.50.10260 3 209 3.1E-53 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 HCD_04170 44124025736a39a08f0acfa0f6e9b729 467 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 214 467 14.386 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 HCD_04170 44124025736a39a08f0acfa0f6e9b729 467 PIRSF PIRSF017184 1 467 2.1E-123 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 HCD_04170 44124025736a39a08f0acfa0f6e9b729 467 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 409 419 - T 13-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site HCD_04170 44124025736a39a08f0acfa0f6e9b729 467 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 211 463 5.3E-72 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 HCD_04170 44124025736a39a08f0acfa0f6e9b729 467 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 4 201 18.758 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 HCD_04170 44124025736a39a08f0acfa0f6e9b729 467 Pfam PF03853 YjeF-related protein N-terminus 24 180 8.4E-35 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 HCD_04170 44124025736a39a08f0acfa0f6e9b729 467 SUPERFAMILY SSF64153 11 236 3.27E-48 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 HCD_04170 44124025736a39a08f0acfa0f6e9b729 467 Pfam PF01256 Carbohydrate kinase 238 463 2.6E-57 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 HCD_04170 44124025736a39a08f0acfa0f6e9b729 467 SUPERFAMILY SSF53613 220 463 7.64E-40 T 13-10-2018 IPR029056 Ribokinase-like HCD_04170 44124025736a39a08f0acfa0f6e9b729 467 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 4 201 4.6E-59 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 HCD_04170 44124025736a39a08f0acfa0f6e9b729 467 Gene3D G3DSA:3.40.1190.20 210 466 1.9E-74 T 13-10-2018 IPR029056 Ribokinase-like HCD_02875 eeff814ea46c7eec86330a946eefb12c 125 SUPERFAMILY SSF54736 54 125 5.06E-24 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like HCD_02875 eeff814ea46c7eec86330a946eefb12c 125 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 59 125 3.1E-28 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_02875 eeff814ea46c7eec86330a946eefb12c 125 Gene3D G3DSA:1.20.5.710 3 54 1.3E-19 T 13-10-2018 HCD_02875 eeff814ea46c7eec86330a946eefb12c 125 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 125 2.9E-50 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_02875 eeff814ea46c7eec86330a946eefb12c 125 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 50 4.2E-17 T 13-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_02875 eeff814ea46c7eec86330a946eefb12c 125 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 61 125 1.0E-26 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_02875 eeff814ea46c7eec86330a946eefb12c 125 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 125 24.455 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_02875 eeff814ea46c7eec86330a946eefb12c 125 Gene3D G3DSA:3.30.1390.10 55 125 7.5E-30 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like HCD_02875 eeff814ea46c7eec86330a946eefb12c 125 SUPERFAMILY SSF48300 4 61 7.98E-14 T 13-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_02755 1fe872a30f6f260ff082b865d5ba0a6d 409 Hamap MF_00740 Phosphopentomutase [deoB]. 2 407 52.283 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 HCD_02755 1fe872a30f6f260ff082b865d5ba0a6d 409 SUPERFAMILY SSF143856 120 235 1.83E-43 T 13-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 HCD_02755 1fe872a30f6f260ff082b865d5ba0a6d 409 Pfam PF01676 Metalloenzyme superfamily 3 398 6.5E-44 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 HCD_02755 1fe872a30f6f260ff082b865d5ba0a6d 409 TIGRFAM TIGR01696 deoB: phosphopentomutase 4 404 1.2E-147 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 HCD_02755 1fe872a30f6f260ff082b865d5ba0a6d 409 PIRSF PIRSF001491 1 409 3.0E-160 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 HCD_02755 1fe872a30f6f260ff082b865d5ba0a6d 409 Gene3D G3DSA:3.40.720.10 4 406 8.2E-146 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 HCD_02755 1fe872a30f6f260ff082b865d5ba0a6d 409 Gene3D G3DSA:3.30.70.1250 117 238 8.2E-146 T 13-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 HCD_02755 1fe872a30f6f260ff082b865d5ba0a6d 409 SUPERFAMILY SSF53649 1 408 7.33E-65 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 HCD_02540 03f2c452212e9063b14af26a23bcc33a 209 SUPERFAMILY SSF53335 18 208 5.87E-36 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_02540 03f2c452212e9063b14af26a23bcc33a 209 Gene3D G3DSA:3.40.50.150 2 209 2.1E-59 T 13-10-2018 HCD_02540 03f2c452212e9063b14af26a23bcc33a 209 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 2 209 1.5E-92 T 13-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 HCD_02540 03f2c452212e9063b14af26a23bcc33a 209 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 5 207 7.8E-76 T 13-10-2018 HCD_02540 03f2c452212e9063b14af26a23bcc33a 209 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 13-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 PIRSF PIRSF002401 1 334 1.6E-127 T 13-10-2018 IPR035101 GTP-binding protein, Obg-type HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 SUPERFAMILY SSF82051 2 155 7.98E-49 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 159 179 1.4E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 180 198 1.4E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 225 243 1.4E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 208 223 1.4E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 Gene3D G3DSA:2.70.210.12 1 155 2.8E-51 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 Pfam PF01926 50S ribosome-binding GTPase 158 280 7.6E-25 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 Hamap MF_01454 GTPase Obg [obg]. 1 360 44.107 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 ProSitePatterns PS00905 GTP1/OBG family signature. 210 223 - T 13-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 2 298 3.0E-124 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 Gene3D G3DSA:3.40.50.300 157 313 1.1E-43 T 13-10-2018 HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 Pfam PF01018 GTP1/OBG 3 155 4.7E-52 T 13-10-2018 IPR006169 GTP1/OBG domain HCD_07160 7bab48457b07659b0e1c9848f7f2fe58 360 SUPERFAMILY SSF52540 158 298 3.66E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_03710 ba17ebe501677408ab9fd2b0862bf6a9 254 Gene3D G3DSA:3.20.20.140 1 253 1.9E-84 T 13-10-2018 HCD_03710 ba17ebe501677408ab9fd2b0862bf6a9 254 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 252 3.2E-83 T 13-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 HCD_03710 ba17ebe501677408ab9fd2b0862bf6a9 254 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 HCD_03710 ba17ebe501677408ab9fd2b0862bf6a9 254 SUPERFAMILY SSF51556 1 253 1.68E-75 T 13-10-2018 IPR032466 Metal-dependent hydrolase HCD_03710 ba17ebe501677408ab9fd2b0862bf6a9 254 PIRSF PIRSF005902 1 254 2.0E-75 T 13-10-2018 IPR001130 TatD family GO:0016788 HCD_03710 ba17ebe501677408ab9fd2b0862bf6a9 254 Pfam PF01026 TatD related DNase 3 252 1.4E-67 T 13-10-2018 IPR001130 TatD family GO:0016788 HCD_01380 49cb813401a41d861384e2da3fd5bb34 292 ProSitePatterns PS00761 Signal peptidases I signature 3. 212 225 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 HCD_01380 49cb813401a41d861384e2da3fd5bb34 292 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 13 247 5.9E-34 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 HCD_01380 49cb813401a41d861384e2da3fd5bb34 292 Pfam PF00717 Peptidase S24-like 34 118 3.1E-12 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C HCD_01380 49cb813401a41d861384e2da3fd5bb34 292 SUPERFAMILY SSF51306 26 275 4.36E-49 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily HCD_01380 49cb813401a41d861384e2da3fd5bb34 292 Gene3D G3DSA:2.170.230.10 115 206 2.2E-39 T 13-10-2018 HCD_01380 49cb813401a41d861384e2da3fd5bb34 292 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 104 116 3.6E-15 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 HCD_01380 49cb813401a41d861384e2da3fd5bb34 292 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 207 226 3.6E-15 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 HCD_01380 49cb813401a41d861384e2da3fd5bb34 292 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 27 43 3.6E-15 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 HCD_01380 49cb813401a41d861384e2da3fd5bb34 292 Gene3D G3DSA:2.10.109.10 27 246 2.2E-39 T 13-10-2018 HCD_03580 91d3523366f6ab63d7955c9c3f56160f 238 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 100 7.0E-45 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03580 91d3523366f6ab63d7955c9c3f56160f 238 Pfam PF00547 Urease, gamma subunit 1 100 2.1E-43 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03580 91d3523366f6ab63d7955c9c3f56160f 238 Hamap MF_01954 Urease subunit beta [ureB]. 106 206 30.291 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03580 91d3523366f6ab63d7955c9c3f56160f 238 Gene3D G3DSA:3.30.280.10 1 101 2.2E-45 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03580 91d3523366f6ab63d7955c9c3f56160f 238 Gene3D G3DSA:2.10.150.10 106 238 1.7E-59 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03580 91d3523366f6ab63d7955c9c3f56160f 238 Hamap MF_01955 Urease subunit alpha [ureA]. 1 224 46.709 T 13-10-2018 IPR008223 Urease, gamma-beta subunit GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03580 91d3523366f6ab63d7955c9c3f56160f 238 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 106 208 2.0E-53 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03580 91d3523366f6ab63d7955c9c3f56160f 238 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 102 6.4E-54 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03580 91d3523366f6ab63d7955c9c3f56160f 238 Pfam PF00699 Urease beta subunit 108 203 1.7E-43 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03580 91d3523366f6ab63d7955c9c3f56160f 238 SUPERFAMILY SSF54111 1 103 6.67E-44 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03580 91d3523366f6ab63d7955c9c3f56160f 238 PIRSF PIRSF001225 1 226 3.9E-111 T 13-10-2018 IPR008223 Urease, gamma-beta subunit GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03580 91d3523366f6ab63d7955c9c3f56160f 238 SUPERFAMILY SSF51278 106 233 4.05E-50 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02575 7ed9e296e0bb7e4bef6da98df474549d 411 SMART SM00788 2 410 1.2E-247 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 HCD_02575 7ed9e296e0bb7e4bef6da98df474549d 411 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 9 16 - T 13-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 HCD_02575 7ed9e296e0bb7e4bef6da98df474549d 411 Gene3D G3DSA:3.90.170.10 257 411 2.2E-65 T 13-10-2018 HCD_02575 7ed9e296e0bb7e4bef6da98df474549d 411 SUPERFAMILY SSF52540 2 410 2.34E-153 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02575 7ed9e296e0bb7e4bef6da98df474549d 411 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 124 135 - T 13-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 HCD_02575 7ed9e296e0bb7e4bef6da98df474549d 411 Gene3D G3DSA:3.40.440.10 4 254 1.4E-93 T 13-10-2018 HCD_02575 7ed9e296e0bb7e4bef6da98df474549d 411 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 4 411 1.0E-182 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 HCD_02575 7ed9e296e0bb7e4bef6da98df474549d 411 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 411 169.722 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 HCD_02575 7ed9e296e0bb7e4bef6da98df474549d 411 Pfam PF00709 Adenylosuccinate synthetase 4 409 1.9E-169 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 HCD_02575 7ed9e296e0bb7e4bef6da98df474549d 411 Gene3D G3DSA:1.10.300.10 96 191 1.4E-93 T 13-10-2018 HCD_02690 ac752d7d87a77b290edac0594767ebde 312 PIRSF PIRSF002867 1 312 3.5E-102 T 13-10-2018 IPR024181 Chemotaxis response regulator CheV HCD_02690 ac752d7d87a77b290edac0594767ebde 312 Gene3D G3DSA:2.30.30.40 33 153 9.7E-29 T 13-10-2018 HCD_02690 ac752d7d87a77b290edac0594767ebde 312 Pfam PF01584 CheW-like domain 34 161 2.3E-34 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 HCD_02690 ac752d7d87a77b290edac0594767ebde 312 Gene3D G3DSA:3.40.50.2300 180 312 5.8E-26 T 13-10-2018 HCD_02690 ac752d7d87a77b290edac0594767ebde 312 Pfam PF00072 Response regulator receiver domain 184 302 9.5E-16 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_02690 ac752d7d87a77b290edac0594767ebde 312 SMART SM00260 11 159 3.1E-38 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 HCD_02690 ac752d7d87a77b290edac0594767ebde 312 SUPERFAMILY SSF50341 13 162 3.66E-27 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 HCD_02690 ac752d7d87a77b290edac0594767ebde 312 SMART SM00448 182 304 1.3E-17 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_02690 ac752d7d87a77b290edac0594767ebde 312 Gene3D G3DSA:2.40.50.180 40 159 9.7E-29 T 13-10-2018 HCD_02690 ac752d7d87a77b290edac0594767ebde 312 SUPERFAMILY SSF52172 184 309 2.56E-25 T 13-10-2018 IPR011006 CheY-like superfamily HCD_04575 5685671c07cc45903c7f7942fa8c8e36 622 Pfam PF04851 Type III restriction enzyme, res subunit 228 383 1.8E-17 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 HCD_04575 5685671c07cc45903c7f7942fa8c8e36 622 SMART SM00487 226 411 4.4E-30 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain HCD_04575 5685671c07cc45903c7f7942fa8c8e36 622 Gene3D G3DSA:3.40.50.300 175 402 1.5E-55 T 13-10-2018 HCD_04575 5685671c07cc45903c7f7942fa8c8e36 622 Pfam PF00271 Helicase conserved C-terminal domain 424 535 6.2E-11 T 13-10-2018 IPR001650 Helicase, C-terminal HCD_04575 5685671c07cc45903c7f7942fa8c8e36 622 Gene3D G3DSA:3.40.50.300 409 572 3.5E-34 T 13-10-2018 HCD_04575 5685671c07cc45903c7f7942fa8c8e36 622 SMART SM00490 456 535 8.3E-9 T 13-10-2018 IPR001650 Helicase, C-terminal HCD_04575 5685671c07cc45903c7f7942fa8c8e36 622 SUPERFAMILY SSF52540 278 552 7.8E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_03655 afebf14a9e02c6208847b0acab142383 307 Gene3D G3DSA:3.40.718.10 1 307 4.6E-95 T 13-10-2018 HCD_03655 afebf14a9e02c6208847b0acab142383 307 SUPERFAMILY SSF53659 3 305 7.38E-74 T 13-10-2018 HCD_03655 afebf14a9e02c6208847b0acab142383 307 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 30 305 4.1E-88 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 HCD_03655 afebf14a9e02c6208847b0acab142383 307 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 5 305 8.1E-90 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 HCD_03655 afebf14a9e02c6208847b0acab142383 307 Hamap MF_02086 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 3 307 47.232 T 13-10-2018 IPR037539 4-hydroxythreonine-4-phosphate dehydrogenase, epsilonproteobacteria KEGG: 00750+1.1.1.262 HCD_05395 03a1f1fac6b2c9b9ac26b033bdd6d2e9 744 SUPERFAMILY SSF50692 547 744 2.49E-30 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily HCD_05395 03a1f1fac6b2c9b9ac26b033bdd6d2e9 744 SUPERFAMILY SSF53706 1 370 5.23E-116 T 13-10-2018 HCD_05395 03a1f1fac6b2c9b9ac26b033bdd6d2e9 744 Gene3D G3DSA:2.40.40.20 558 744 3.6E-38 T 13-10-2018 HCD_05395 03a1f1fac6b2c9b9ac26b033bdd6d2e9 744 Pfam PF01568 Molydopterin dinucleotide binding domain 626 736 2.1E-15 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 HCD_05395 03a1f1fac6b2c9b9ac26b033bdd6d2e9 744 Gene3D G3DSA:3.40.228.10 1 187 3.8E-91 T 13-10-2018 HCD_05395 03a1f1fac6b2c9b9ac26b033bdd6d2e9 744 Pfam PF00384 Molybdopterin oxidoreductase 10 353 1.0E-37 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_05395 03a1f1fac6b2c9b9ac26b033bdd6d2e9 744 Gene3D G3DSA:3.40.50.740 188 412 3.8E-91 T 13-10-2018 HCD_04360 5382a9c6fec0dd3f84d5c336739e466b 148 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 7 148 1.2E-68 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 HCD_04360 5382a9c6fec0dd3f84d5c336739e466b 148 PIRSF PIRSF004638 1 148 5.9E-62 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 HCD_04360 5382a9c6fec0dd3f84d5c336739e466b 148 Pfam PF03653 Uncharacterised protein family (UPF0093) 5 148 2.0E-58 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 HCD_04365 e2946181d3175abd24e433b3df8a2d39 190 Pfam PF01205 Uncharacterized protein family UPF0029 15 114 1.3E-20 T 13-10-2018 IPR001498 Impact, N-terminal HCD_04365 e2946181d3175abd24e433b3df8a2d39 190 Gene3D G3DSA:3.30.230.30 1 126 1.3E-33 T 13-10-2018 IPR036956 Impact, N-terminal domain superfamily HCD_04365 e2946181d3175abd24e433b3df8a2d39 190 SUPERFAMILY SSF54211 3 123 4.55E-30 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_04365 e2946181d3175abd24e433b3df8a2d39 190 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 4 188 1.6E-66 T 13-10-2018 IPR015796 Impact family, bacterial/archaeal HCD_04015 6d7d663f74831f6b4128640b70095984 181 Pfam PF00673 ribosomal L5P family C-terminus 85 177 6.2E-34 T 13-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04015 6d7d663f74831f6b4128640b70095984 181 SUPERFAMILY SSF55282 1 178 2.59E-65 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04015 6d7d663f74831f6b4128640b70095984 181 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 38.493 T 13-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04015 6d7d663f74831f6b4128640b70095984 181 Pfam PF00281 Ribosomal protein L5 24 80 1.8E-20 T 13-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04015 6d7d663f74831f6b4128640b70095984 181 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 13-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04015 6d7d663f74831f6b4128640b70095984 181 PIRSF PIRSF002161 1 181 3.5E-63 T 13-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04015 6d7d663f74831f6b4128640b70095984 181 Gene3D G3DSA:3.30.1440.10 3 179 1.3E-69 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_00530 1811a164400f468034a82533da474c46 166 Pfam PF00145 C-5 cytosine-specific DNA methylase 3 128 4.7E-25 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_00530 1811a164400f468034a82533da474c46 166 SUPERFAMILY SSF53335 3 132 6.21E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_00530 1811a164400f468034a82533da474c46 166 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 4 20 9.7E-7 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_00530 1811a164400f468034a82533da474c46 166 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 112 126 9.7E-7 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_00530 1811a164400f468034a82533da474c46 166 Gene3D G3DSA:3.40.50.150 1 165 8.6E-37 T 13-10-2018 HCD_04730 fd8bb845075a9d510de9f8120ff5549c 281 Pfam PF01513 ATP-NAD kinase 52 255 1.4E-34 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 HCD_04730 fd8bb845075a9d510de9f8120ff5549c 281 Gene3D G3DSA:3.40.50.10330 51 274 5.7E-67 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 HCD_04730 fd8bb845075a9d510de9f8120ff5549c 281 Gene3D G3DSA:2.60.200.30 122 250 5.7E-67 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 HCD_04730 fd8bb845075a9d510de9f8120ff5549c 281 SUPERFAMILY SSF111331 30 276 5.76E-65 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily HCD_04730 fd8bb845075a9d510de9f8120ff5549c 281 Hamap MF_00361 NAD kinase [nadK]. 6 273 27.298 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 HCD_05565 eb23d8e186c6d4d8bd1d8e7b9dc07c6a 412 Pfam PF12704 MacB-like periplasmic core domain 31 196 3.9E-6 T 13-10-2018 IPR025857 MacB-like periplasmic core domain HCD_05565 eb23d8e186c6d4d8bd1d8e7b9dc07c6a 412 Pfam PF02687 FtsX-like permease family 305 405 5.5E-9 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 HCD_03105 40554426d9f149643272981d50ee84cf 441 SUPERFAMILY SSF158472 156 200 2.22E-5 T 13-10-2018 HCD_03105 40554426d9f149643272981d50ee84cf 441 SMART SM00387 306 409 9.0E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase HCD_03105 40554426d9f149643272981d50ee84cf 441 SUPERFAMILY SSF55874 267 399 1.31E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily HCD_03105 40554426d9f149643272981d50ee84cf 441 SMART SM00304 152 204 5.9E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 HCD_03105 40554426d9f149643272981d50ee84cf 441 SUPERFAMILY SSF47384 188 261 1.24E-6 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 HCD_03105 40554426d9f149643272981d50ee84cf 441 Gene3D G3DSA:1.10.287.130 151 260 6.1E-15 T 13-10-2018 HCD_03105 40554426d9f149643272981d50ee84cf 441 Gene3D G3DSA:3.30.565.10 266 404 5.5E-11 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 158 4.8E-6 T 13-10-2018 HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 4.8E-6 T 13-10-2018 HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 6 617 2.0E-285 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 Gene3D G3DSA:1.10.10.1800 457 545 3.1E-8 T 13-10-2018 HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 3 620 39.263 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 Gene3D G3DSA:3.50.50.60 293 455 5.7E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 Gene3D G3DSA:3.50.50.60 1 221 8.7E-80 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 Gene3D G3DSA:1.10.150.570 565 618 4.2E-17 T 13-10-2018 HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 365 388 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 SMART SM01228 542 613 1.0E-27 T 13-10-2018 HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 SUPERFAMILY SSF51905 5 258 5.96E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 Pfam PF13932 GidA associated domain 398 611 3.7E-65 T 13-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 Pfam PF01134 Glucose inhibited division protein A 6 394 1.1E-158 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 HCD_08035 8be8ee08f5caeeeaa323b338cf17fa13 621 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 270 284 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 Gene3D G3DSA:3.40.50.720 1 174 4.7E-28 T 13-10-2018 HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 5 22 1.8E-29 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 184 208 1.8E-29 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 224 241 1.8E-29 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 159 183 1.8E-29 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 120 140 1.8E-29 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 174 195 - T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 SUPERFAMILY SSF48179 165 310 1.87E-44 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 Gene3D G3DSA:1.10.1040.10 175 312 1.8E-40 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2 147 3.6E-23 T 13-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 PIRSF PIRSF000114 1 312 2.1E-65 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 SUPERFAMILY SSF51735 1 154 2.84E-19 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 166 300 5.1E-41 T 13-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 HCD_06510 ef0cc7e6fd61cff906c39b6b0ffea16b 312 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 1 307 29.909 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 HCD_02055 878d33f7d30a577a55cbb3bc7f3e01eb 309 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 5 303 4.9E-95 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_02055 878d33f7d30a577a55cbb3bc7f3e01eb 309 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 63 75 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 HCD_02055 878d33f7d30a577a55cbb3bc7f3e01eb 309 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 285 303 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 HCD_02055 878d33f7d30a577a55cbb3bc7f3e01eb 309 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 149 162 4.7E-14 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_02055 878d33f7d30a577a55cbb3bc7f3e01eb 309 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 2 18 4.7E-14 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_02055 878d33f7d30a577a55cbb3bc7f3e01eb 309 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 102 116 4.7E-14 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_02055 878d33f7d30a577a55cbb3bc7f3e01eb 309 Pfam PF00145 C-5 cytosine-specific DNA methylase 1 305 8.0E-83 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_02055 878d33f7d30a577a55cbb3bc7f3e01eb 309 Gene3D G3DSA:3.40.50.150 3 297 5.3E-96 T 13-10-2018 HCD_02055 878d33f7d30a577a55cbb3bc7f3e01eb 309 Gene3D G3DSA:3.90.120.10 178 268 5.3E-96 T 13-10-2018 HCD_02055 878d33f7d30a577a55cbb3bc7f3e01eb 309 SUPERFAMILY SSF53335 1 306 3.68E-93 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_03375 3c651a00f389bcaeed0cdb925de4ac27 64 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 30 - T 13-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03375 3c651a00f389bcaeed0cdb925de4ac27 64 Gene3D G3DSA:2.40.50.530 4 62 4.1E-14 T 13-10-2018 HCD_03375 3c651a00f389bcaeed0cdb925de4ac27 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 62 3.1E-21 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 HCD_03375 3c651a00f389bcaeed0cdb925de4ac27 64 SUPERFAMILY SSF143034 2 61 7.46E-16 T 13-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03375 3c651a00f389bcaeed0cdb925de4ac27 64 Pfam PF01632 Ribosomal protein L35 2 61 5.7E-18 T 13-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03375 3c651a00f389bcaeed0cdb925de4ac27 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 2.1E-10 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 HCD_03375 3c651a00f389bcaeed0cdb925de4ac27 64 PRINTS PR00064 Ribosomal protein L35 signature 20 34 2.1E-10 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 HCD_03375 3c651a00f389bcaeed0cdb925de4ac27 64 PRINTS PR00064 Ribosomal protein L35 signature 35 53 2.1E-10 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 HCD_03375 3c651a00f389bcaeed0cdb925de4ac27 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 63 14.946 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 HCD_07735 88673ffa3451ed5992bbf35a6b6671ff 380 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 120 375 7.4E-93 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 HCD_07735 88673ffa3451ed5992bbf35a6b6671ff 380 Pfam PF00809 Pterin binding enzyme 122 361 1.3E-67 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 HCD_07735 88673ffa3451ed5992bbf35a6b6671ff 380 SUPERFAMILY SSF51717 116 377 3.79E-74 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 HCD_07735 88673ffa3451ed5992bbf35a6b6671ff 380 Gene3D G3DSA:3.20.20.20 97 380 1.2E-80 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 HCD_07735 88673ffa3451ed5992bbf35a6b6671ff 380 PIRSF PIRSF000501 1 380 3.2E-186 T 13-10-2018 IPR016227 Dihydropteroate synthase, predicted KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 SUPERFAMILY SSF51621 477 803 9.14E-96 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 485 801 7.3E-63 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 706 721 6.0E-7 T 13-10-2018 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 723 738 6.0E-7 T 13-10-2018 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 759 771 6.0E-7 T 13-10-2018 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 706 724 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 Gene3D G3DSA:3.30.470.20 194 363 2.1E-53 T 13-10-2018 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 4 802 0.0 T 13-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 Gene3D G3DSA:3.20.20.60 489 802 1.9E-99 T 13-10-2018 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 Gene3D G3DSA:3.30.1490.20 1 193 4.6E-69 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 Pfam PF00391 PEP-utilising enzyme, mobile domain 395 466 6.9E-24 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 SUPERFAMILY SSF52009 363 478 3.01E-32 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 SUPERFAMILY SSF56059 2 395 2.0E-101 T 13-10-2018 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 425 436 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 Gene3D G3DSA:3.50.30.10 366 477 1.5E-38 T 13-10-2018 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 PIRSF PIRSF000854 1 806 0.0 T 13-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 HCD_03390 51fe88200023e2c13e72725a082b88a0 806 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 16 350 2.1E-117 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 HCD_01235 3d3fad8038bd79715955798f083c774c 339 Gene3D G3DSA:3.20.20.210 1 339 2.5E-124 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 HCD_01235 3d3fad8038bd79715955798f083c774c 339 SUPERFAMILY SSF51726 3 337 7.15E-101 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 HCD_01235 3d3fad8038bd79715955798f083c774c 339 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 16 25 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 HCD_01235 3d3fad8038bd79715955798f083c774c 339 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 3 335 1.2E-134 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 HCD_01235 3d3fad8038bd79715955798f083c774c 339 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 4 337 45.937 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 HCD_01235 3d3fad8038bd79715955798f083c774c 339 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 135 151 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 HCD_01235 3d3fad8038bd79715955798f083c774c 339 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 3 335 9.1E-114 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 HCD_03380 e07f022576b1a0af3504b6521d412599 212 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 8 170 3.8E-70 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 HCD_03380 e07f022576b1a0af3504b6521d412599 212 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 171 26.775 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 HCD_03380 e07f022576b1a0af3504b6521d412599 212 ProSitePatterns PS00938 Initiation factor 3 signature. 59 72 - T 13-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 HCD_03380 e07f022576b1a0af3504b6521d412599 212 Gene3D G3DSA:3.30.110.10 80 181 6.8E-28 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 HCD_03380 e07f022576b1a0af3504b6521d412599 212 SUPERFAMILY SSF54364 6 79 4.05E-27 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 HCD_03380 e07f022576b1a0af3504b6521d412599 212 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 8 77 7.9E-29 T 13-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 HCD_03380 e07f022576b1a0af3504b6521d412599 212 Gene3D G3DSA:3.10.20.80 2 79 4.4E-30 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 HCD_03380 e07f022576b1a0af3504b6521d412599 212 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 84 169 3.4E-25 T 13-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 HCD_03380 e07f022576b1a0af3504b6521d412599 212 SUPERFAMILY SSF55200 84 170 2.88E-24 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 HCD_06255 4ad6161737dd74b0a1b4a84c041f28b3 507 SMART SM00490 287 368 4.2E-33 T 13-10-2018 IPR001650 Helicase, C-terminal HCD_06255 4ad6161737dd74b0a1b4a84c041f28b3 507 Pfam PF00270 DEAD/DEAH box helicase 61 225 5.3E-48 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 HCD_06255 4ad6161737dd74b0a1b4a84c041f28b3 507 Gene3D G3DSA:3.40.50.300 2 239 9.8E-75 T 13-10-2018 HCD_06255 4ad6161737dd74b0a1b4a84c041f28b3 507 SUPERFAMILY SSF52540 106 388 4.98E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_06255 4ad6161737dd74b0a1b4a84c041f28b3 507 SMART SM00487 55 251 1.3E-62 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain HCD_06255 4ad6161737dd74b0a1b4a84c041f28b3 507 Pfam PF00271 Helicase conserved C-terminal domain 261 368 4.4E-32 T 13-10-2018 IPR001650 Helicase, C-terminal HCD_06255 4ad6161737dd74b0a1b4a84c041f28b3 507 Gene3D G3DSA:3.40.50.300 243 505 2.0E-51 T 13-10-2018 HCD_02075 6c612fbd0bafcb2520044f610a689981 343 Pfam PF14842 FliG N-terminal domain 15 116 6.3E-29 T 13-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain HCD_02075 6c612fbd0bafcb2520044f610a689981 343 Gene3D G3DSA:1.10.220.30 114 205 7.6E-35 T 13-10-2018 HCD_02075 6c612fbd0bafcb2520044f610a689981 343 Gene3D G3DSA:1.10.220.30 5 113 7.5E-14 T 13-10-2018 HCD_02075 6c612fbd0bafcb2520044f610a689981 343 Pfam PF01706 FliG C-terminal domain 229 334 1.9E-33 T 13-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal HCD_02075 6c612fbd0bafcb2520044f610a689981 343 Gene3D G3DSA:1.10.220.30 206 342 2.5E-37 T 13-10-2018 HCD_02075 6c612fbd0bafcb2520044f610a689981 343 SUPERFAMILY SSF48029 9 111 3.66E-18 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical HCD_02075 6c612fbd0bafcb2520044f610a689981 343 SUPERFAMILY SSF48029 127 334 4.97E-60 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical HCD_02075 6c612fbd0bafcb2520044f610a689981 343 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 11 343 4.0E-154 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 HCD_02075 6c612fbd0bafcb2520044f610a689981 343 Pfam PF14841 FliG middle domain 127 200 1.9E-27 T 13-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain HCD_02075 6c612fbd0bafcb2520044f610a689981 343 PIRSF PIRSF003161 10 343 3.3E-109 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 HCD_02075 6c612fbd0bafcb2520044f610a689981 343 PRINTS PR00954 Flagellar motor switch protein FliG signature 126 149 1.0E-60 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 HCD_02075 6c612fbd0bafcb2520044f610a689981 343 PRINTS PR00954 Flagellar motor switch protein FliG signature 283 309 1.0E-60 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 HCD_02075 6c612fbd0bafcb2520044f610a689981 343 PRINTS PR00954 Flagellar motor switch protein FliG signature 259 279 1.0E-60 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 HCD_02075 6c612fbd0bafcb2520044f610a689981 343 PRINTS PR00954 Flagellar motor switch protein FliG signature 45 71 1.0E-60 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 HCD_02075 6c612fbd0bafcb2520044f610a689981 343 PRINTS PR00954 Flagellar motor switch protein FliG signature 206 231 1.0E-60 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 HCD_02075 6c612fbd0bafcb2520044f610a689981 343 PRINTS PR00954 Flagellar motor switch protein FliG signature 237 257 1.0E-60 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 HCD_02075 6c612fbd0bafcb2520044f610a689981 343 PRINTS PR00954 Flagellar motor switch protein FliG signature 16 32 1.0E-60 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 HCD_01905 7b1ca3b887dc814fdea7b052b7a4e323 336 SMART SM01126 142 297 1.2E-20 T 13-10-2018 IPR024445 ISXO2-like transposase domain HCD_01905 7b1ca3b887dc814fdea7b052b7a4e323 336 Pfam PF12762 ISXO2-like transposase domain 143 293 1.4E-13 T 13-10-2018 IPR024445 ISXO2-like transposase domain HCD_01060 30f04828b99c6b0e02f2d96713e93046 308 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 6 306 6.3E-114 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 HCD_01060 30f04828b99c6b0e02f2d96713e93046 308 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 8 307 32.335 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 HCD_01060 30f04828b99c6b0e02f2d96713e93046 308 Gene3D G3DSA:3.40.50.150 8 304 4.5E-86 T 13-10-2018 HCD_01060 30f04828b99c6b0e02f2d96713e93046 308 Gene3D G3DSA:1.10.150.170 114 213 4.5E-86 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 HCD_01060 30f04828b99c6b0e02f2d96713e93046 308 SUPERFAMILY SSF81799 116 212 1.15E-24 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 HCD_01060 30f04828b99c6b0e02f2d96713e93046 308 PIRSF PIRSF004486 2 308 1.2E-98 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 HCD_01060 30f04828b99c6b0e02f2d96713e93046 308 SUPERFAMILY SSF53335 8 304 1.56E-33 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_01060 30f04828b99c6b0e02f2d96713e93046 308 Pfam PF01795 MraW methylase family 7 305 3.8E-109 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 HCD_04880 62f9eb73669555be479e79060062d465 168 Pfam PF01467 Cytidylyltransferase-like 8 163 6.5E-28 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 HCD_04880 62f9eb73669555be479e79060062d465 168 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 8 166 3.0E-38 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 HCD_04880 62f9eb73669555be479e79060062d465 168 Gene3D G3DSA:3.40.50.620 4 167 1.4E-40 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_04880 62f9eb73669555be479e79060062d465 168 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 4 167 19.009 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 HCD_04880 62f9eb73669555be479e79060062d465 168 SUPERFAMILY SSF52374 6 165 2.69E-37 T 13-10-2018 HCD_04880 62f9eb73669555be479e79060062d465 168 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 7 66 2.6E-12 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 HCD_06405 5aefd3e9123c50ec2906b4e4e705a6b2 185 Pfam PF04471 Restriction endonuclease 71 179 5.5E-28 T 13-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 HCD_06405 5aefd3e9123c50ec2906b4e4e705a6b2 185 SUPERFAMILY SSF52980 75 180 3.22E-25 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 HCD_06405 5aefd3e9123c50ec2906b4e4e705a6b2 185 Gene3D G3DSA:3.40.1350.10 74 179 8.2E-13 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 HCD_08270 c48d4e0e210aca62657454d4a70b1cc7 78 Gene3D G3DSA:1.10.1220.10 39 78 4.3E-24 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 HCD_08270 c48d4e0e210aca62657454d4a70b1cc7 78 SUPERFAMILY SSF47598 31 73 2.74E-22 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 HCD_08270 c48d4e0e210aca62657454d4a70b1cc7 78 Pfam PF16777 Transcriptional regulator, RHH-like, CopG 1 73 1.0E-33 T 13-10-2018 IPR031895 RHH transcriptional regulator CopG HCD_05595 4caddf75b0fcf209169d95a6da966bee 506 Gene3D G3DSA:3.30.230.10 6 167 1.3E-7 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup HCD_05595 4caddf75b0fcf209169d95a6da966bee 506 SUPERFAMILY SSF52540 200 503 1.8E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_05595 4caddf75b0fcf209169d95a6da966bee 506 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 15 503 1.9E-131 T 13-10-2018 IPR004482 Mg chelatase-related protein HCD_05595 4caddf75b0fcf209169d95a6da966bee 506 SUPERFAMILY SSF54211 13 167 2.31E-24 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_05595 4caddf75b0fcf209169d95a6da966bee 506 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 299 314 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 HCD_05595 4caddf75b0fcf209169d95a6da966bee 506 Pfam PF01078 Magnesium chelatase, subunit ChlI 200 403 6.3E-76 T 13-10-2018 IPR000523 Magnesium chelatase ChlI domain HCD_05595 4caddf75b0fcf209169d95a6da966bee 506 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 412 503 8.1E-24 T 13-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain HCD_05595 4caddf75b0fcf209169d95a6da966bee 506 Gene3D G3DSA:3.40.50.300 182 506 9.2E-42 T 13-10-2018 HCD_05595 4caddf75b0fcf209169d95a6da966bee 506 Pfam PF13541 Subunit ChlI of Mg-chelatase 20 140 1.4E-37 T 13-10-2018 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 599 3.3E-289 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 SUPERFAMILY SSF53067 185 376 1.67E-63 T 13-10-2018 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 190 203 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 PRINTS PR00301 70kDa heat shock protein signature 196 206 5.5E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 PRINTS PR00301 70kDa heat shock protein signature 54 62 5.5E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 PRINTS PR00301 70kDa heat shock protein signature 31 43 5.5E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 PRINTS PR00301 70kDa heat shock protein signature 463 479 5.5E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 PRINTS PR00301 70kDa heat shock protein signature 382 401 5.5E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 PRINTS PR00301 70kDa heat shock protein signature 359 379 5.5E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 PRINTS PR00301 70kDa heat shock protein signature 3 16 5.5E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 PRINTS PR00301 70kDa heat shock protein signature 137 157 5.5E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 PRINTS PR00301 70kDa heat shock protein signature 328 344 5.5E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 Gene3D G3DSA:3.30.420.40 5 373 2.7E-149 T 13-10-2018 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 Gene3D G3DSA:3.90.640.10 223 310 2.7E-149 T 13-10-2018 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 SUPERFAMILY SSF53067 1 182 1.23E-60 T 13-10-2018 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 Pfam PF00012 Hsp70 protein 4 599 4.9E-248 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 Gene3D G3DSA:3.30.420.40 179 360 2.7E-149 T 13-10-2018 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 331 345 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 SUPERFAMILY SSF100920 378 534 6.93E-61 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 SUPERFAMILY SSF100934 501 601 1.57E-15 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 Gene3D G3DSA:1.20.1270.10 518 603 4.1E-18 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 Gene3D G3DSA:2.60.34.10 377 516 8.1E-64 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 HCD_03420 57e8ad39a946a3ce5a88bab6f4ce4ca1 620 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 617 35.479 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 HCD_04145 c52519b9eb4bb4e49cc06a6538f63cf8 376 Gene3D G3DSA:1.10.287.1120 155 365 4.1E-53 T 13-10-2018 HCD_04145 c52519b9eb4bb4e49cc06a6538f63cf8 376 SUPERFAMILY SSF116734 194 376 1.8E-36 T 13-10-2018 HCD_04145 c52519b9eb4bb4e49cc06a6538f63cf8 376 Gene3D G3DSA:3.90.220.20 195 328 4.1E-53 T 13-10-2018 HCD_04145 c52519b9eb4bb4e49cc06a6538f63cf8 376 Pfam PF01420 Type I restriction modification DNA specificity domain 205 354 7.8E-26 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 HCD_04145 c52519b9eb4bb4e49cc06a6538f63cf8 376 Pfam PF01420 Type I restriction modification DNA specificity domain 11 175 3.6E-33 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 HCD_04145 c52519b9eb4bb4e49cc06a6538f63cf8 376 SUPERFAMILY SSF116734 5 202 2.29E-36 T 13-10-2018 HCD_04145 c52519b9eb4bb4e49cc06a6538f63cf8 376 Gene3D G3DSA:3.90.220.20 3 149 5.9E-21 T 13-10-2018 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 SUPERFAMILY SSF82714 698 783 4.84E-10 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 SUPERFAMILY SSF82693 543 631 1.57E-11 T 13-10-2018 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 Gene3D G3DSA:1.20.1640.10 491 1002 4.0E-286 T 13-10-2018 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 Gene3D G3DSA:3.30.70.1430 545 643 4.0E-286 T 13-10-2018 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 Gene3D G3DSA:3.30.70.1440 644 845 4.0E-286 T 13-10-2018 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 SUPERFAMILY SSF82866 282 479 1.28E-39 T 13-10-2018 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 Gene3D G3DSA:3.30.2090.10 697 786 4.0E-286 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 Gene3D G3DSA:3.30.70.1430 38 794 4.0E-286 T 13-10-2018 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 Gene3D G3DSA:3.30.70.1320 131 317 4.0E-286 T 13-10-2018 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 SUPERFAMILY SSF82866 783 1007 9.16E-49 T 13-10-2018 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 SUPERFAMILY SSF82693 38 125 2.67E-19 T 13-10-2018 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 Pfam PF00873 AcrB/AcrD/AcrF family 1 1005 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 SUPERFAMILY SSF82693 134 314 1.78E-13 T 13-10-2018 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 SUPERFAMILY SSF82714 179 258 3.92E-11 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 4.9E-73 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 4.9E-73 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 530 547 4.9E-73 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 376 400 4.9E-73 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 429 452 4.9E-73 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 348 369 4.9E-73 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 454 477 4.9E-73 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 596 610 4.9E-73 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 PRINTS PR00702 Acriflavin resistance protein family signature 321 344 4.9E-73 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 Gene3D G3DSA:1.20.1640.10 8 490 4.0E-286 T 13-10-2018 HCD_01220 6d8d612614b0bbb7ed75c220d6d0a46c 1023 Gene3D G3DSA:3.30.2090.10 175 261 4.0E-286 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains HCD_01595 a722c7c4365b603ae0308cd683d5a06c 226 Gene3D G3DSA:1.20.120.220 71 221 1.0E-38 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_01595 a722c7c4365b603ae0308cd683d5a06c 226 ProSitePatterns PS00449 ATP synthase a subunit signature. 162 171 - T 13-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_01595 a722c7c4365b603ae0308cd683d5a06c 226 Pfam PF00119 ATP synthase A chain 23 216 2.1E-52 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_01595 a722c7c4365b603ae0308cd683d5a06c 226 PRINTS PR00123 ATP synthase A subunit signature 79 95 8.9E-14 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_01595 a722c7c4365b603ae0308cd683d5a06c 226 PRINTS PR00123 ATP synthase A subunit signature 203 218 8.9E-14 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_01595 a722c7c4365b603ae0308cd683d5a06c 226 PRINTS PR00123 ATP synthase A subunit signature 139 154 8.9E-14 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_01595 a722c7c4365b603ae0308cd683d5a06c 226 PRINTS PR00123 ATP synthase A subunit signature 159 181 8.9E-14 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_01595 a722c7c4365b603ae0308cd683d5a06c 226 Hamap MF_01393 ATP synthase subunit a [atpB]. 1 223 15.339 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_01595 a722c7c4365b603ae0308cd683d5a06c 226 SUPERFAMILY SSF81336 73 216 1.26E-36 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_01595 a722c7c4365b603ae0308cd683d5a06c 226 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 9 218 4.3E-46 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_00275 462112f74e2918675bc448496cfc189c 137 Gene3D G3DSA:3.30.70.141 1 137 3.1E-59 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 HCD_00275 462112f74e2918675bc448496cfc189c 137 SUPERFAMILY SSF54919 2 136 2.62E-56 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 HCD_00275 462112f74e2918675bc448496cfc189c 137 SMART SM00562 2 137 9.0E-78 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 HCD_00275 462112f74e2918675bc448496cfc189c 137 PRINTS PR01243 Nucleoside diphosphate kinase signature 49 68 2.9E-40 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 HCD_00275 462112f74e2918675bc448496cfc189c 137 PRINTS PR01243 Nucleoside diphosphate kinase signature 90 106 2.9E-40 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 HCD_00275 462112f74e2918675bc448496cfc189c 137 PRINTS PR01243 Nucleoside diphosphate kinase signature 5 27 2.9E-40 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 HCD_00275 462112f74e2918675bc448496cfc189c 137 PRINTS PR01243 Nucleoside diphosphate kinase signature 113 132 2.9E-40 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 HCD_00275 462112f74e2918675bc448496cfc189c 137 PRINTS PR01243 Nucleoside diphosphate kinase signature 69 86 2.9E-40 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 HCD_00275 462112f74e2918675bc448496cfc189c 137 Pfam PF00334 Nucleoside diphosphate kinase 3 136 4.4E-55 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 HCD_00275 462112f74e2918675bc448496cfc189c 137 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 113 121 - T 13-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_00275 462112f74e2918675bc448496cfc189c 137 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 2 137 33.84 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 HCD_05435 fa4020be142356fdf0706f67376410dc 438 Gene3D G3DSA:2.40.50.140 69 145 6.7E-31 T 13-10-2018 HCD_05435 fa4020be142356fdf0706f67376410dc 438 SMART SM00357 74 140 4.6E-21 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 HCD_05435 fa4020be142356fdf0706f67376410dc 438 SUPERFAMILY SSF68912 24 69 3.14E-9 T 13-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily HCD_05435 fa4020be142356fdf0706f67376410dc 438 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 179 382 2.8E-20 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_05435 fa4020be142356fdf0706f67376410dc 438 Gene3D G3DSA:3.40.50.300 153 436 8.4E-122 T 13-10-2018 HCD_05435 fa4020be142356fdf0706f67376410dc 438 Pfam PF07497 Rho termination factor, RNA-binding domain 74 145 1.0E-28 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 HCD_05435 fa4020be142356fdf0706f67376410dc 438 TIGRFAM TIGR00767 rho: transcription termination factor Rho 24 436 3.3E-210 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 HCD_05435 fa4020be142356fdf0706f67376410dc 438 SUPERFAMILY SSF50249 71 145 3.68E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_05435 fa4020be142356fdf0706f67376410dc 438 SUPERFAMILY SSF52540 114 389 4.21E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_05435 fa4020be142356fdf0706f67376410dc 438 SMART SM00382 189 380 2.4E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_05435 fa4020be142356fdf0706f67376410dc 438 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 438 210.56 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 HCD_05435 fa4020be142356fdf0706f67376410dc 438 Gene3D G3DSA:1.10.720.10 24 68 6.5E-14 T 13-10-2018 HCD_05435 fa4020be142356fdf0706f67376410dc 438 SMART SM00959 27 69 1.3E-12 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 HCD_05435 fa4020be142356fdf0706f67376410dc 438 Pfam PF07498 Rho termination factor, N-terminal domain 27 69 5.2E-13 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 HCD_04420 11e333e503d4b88a8e5a14e082631a71 178 Gene3D G3DSA:2.40.240.10 1 90 1.0E-18 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 HCD_04420 11e333e503d4b88a8e5a14e082631a71 178 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 2 176 3.3E-63 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 HCD_04420 11e333e503d4b88a8e5a14e082631a71 178 Pfam PF01386 Ribosomal L25p family 2 87 1.3E-16 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 HCD_04420 11e333e503d4b88a8e5a14e082631a71 178 Gene3D G3DSA:2.170.120.20 94 178 1.2E-16 T 13-10-2018 IPR037121 Ribosomal protein L25, C-terminal HCD_04420 11e333e503d4b88a8e5a14e082631a71 178 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 2 90 2.0E-43 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 HCD_04420 11e333e503d4b88a8e5a14e082631a71 178 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 97 176 3.5E-18 T 13-10-2018 IPR020057 Ribosomal protein L25, beta domain HCD_04420 11e333e503d4b88a8e5a14e082631a71 178 SUPERFAMILY SSF50715 6 176 1.01E-44 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 HCD_04420 11e333e503d4b88a8e5a14e082631a71 178 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 3 178 20.676 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 HCD_02185 41f1c1c68cd76c0711d2f33cbe226d05 204 ProSitePatterns PS00856 Guanylate kinase-like signature. 39 56 - T 13-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 HCD_02185 41f1c1c68cd76c0711d2f33cbe226d05 204 Hamap MF_00328 Guanylate kinase [gmk]. 3 186 34.266 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 HCD_02185 41f1c1c68cd76c0711d2f33cbe226d05 204 SMART SM00072 4 186 1.4E-67 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit HCD_02185 41f1c1c68cd76c0711d2f33cbe226d05 204 Gene3D G3DSA:3.40.50.300 9 181 1.7E-63 T 13-10-2018 HCD_02185 41f1c1c68cd76c0711d2f33cbe226d05 204 Pfam PF00625 Guanylate kinase 6 177 1.2E-47 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit HCD_02185 41f1c1c68cd76c0711d2f33cbe226d05 204 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 6 183 3.0E-71 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 HCD_02185 41f1c1c68cd76c0711d2f33cbe226d05 204 Gene3D G3DSA:3.30.63.10 36 95 1.7E-63 T 13-10-2018 HCD_02185 41f1c1c68cd76c0711d2f33cbe226d05 204 SUPERFAMILY SSF52540 6 184 3.08E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_06780 d8803e605d1a9fd8cbb46e5668db3fa7 439 SUPERFAMILY SSF52374 2 292 7.78E-80 T 13-10-2018 HCD_06780 d8803e605d1a9fd8cbb46e5668db3fa7 439 PRINTS PR00987 Glutamyl-tRNA synthetase signature 17 28 8.9E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 HCD_06780 d8803e605d1a9fd8cbb46e5668db3fa7 439 PRINTS PR00987 Glutamyl-tRNA synthetase signature 32 45 8.9E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 HCD_06780 d8803e605d1a9fd8cbb46e5668db3fa7 439 PRINTS PR00987 Glutamyl-tRNA synthetase signature 172 182 8.9E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 HCD_06780 d8803e605d1a9fd8cbb46e5668db3fa7 439 PRINTS PR00987 Glutamyl-tRNA synthetase signature 3 15 8.9E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 HCD_06780 d8803e605d1a9fd8cbb46e5668db3fa7 439 PRINTS PR00987 Glutamyl-tRNA synthetase signature 188 196 8.9E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 HCD_06780 d8803e605d1a9fd8cbb46e5668db3fa7 439 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 6 17 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_06780 d8803e605d1a9fd8cbb46e5668db3fa7 439 SUPERFAMILY SSF48163 273 425 9.55E-18 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 HCD_06780 d8803e605d1a9fd8cbb46e5668db3fa7 439 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 1 438 23.949 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 HCD_06780 d8803e605d1a9fd8cbb46e5668db3fa7 439 Gene3D G3DSA:3.40.50.620 1 307 2.3E-96 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_06780 d8803e605d1a9fd8cbb46e5668db3fa7 439 Gene3D G3DSA:1.10.10.350 352 439 1.4E-6 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 HCD_06780 d8803e605d1a9fd8cbb46e5668db3fa7 439 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 298 5.7E-73 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 HCD_06780 d8803e605d1a9fd8cbb46e5668db3fa7 439 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 1 438 3.1E-158 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 HCD_00780 a1f93ad5a46de6a8692dd391ee37ead9 263 Gene3D G3DSA:3.30.70.890 170 263 1.3E-6 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily HCD_00780 a1f93ad5a46de6a8692dd391ee37ead9 263 SUPERFAMILY SSF55060 177 261 9.35E-7 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily HCD_00780 a1f93ad5a46de6a8692dd391ee37ead9 263 Gene3D G3DSA:3.30.230.10 3 166 2.3E-36 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup HCD_00780 a1f93ad5a46de6a8692dd391ee37ead9 263 Pfam PF00288 GHMP kinases N terminal domain 94 143 8.0E-6 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 HCD_00780 a1f93ad5a46de6a8692dd391ee37ead9 263 SUPERFAMILY SSF54211 5 165 1.29E-22 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_00780 a1f93ad5a46de6a8692dd391ee37ead9 263 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 3 263 19.144 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 HCD_00780 a1f93ad5a46de6a8692dd391ee37ead9 263 PIRSF PIRSF010376 1 263 1.5E-55 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 HCD_00780 a1f93ad5a46de6a8692dd391ee37ead9 263 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4 262 2.0E-85 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 HCD_05455 0a205f81a45383b2252a76bf5fe34c0d 443 Gene3D G3DSA:1.10.8.60 335 440 1.0E-32 T 13-10-2018 HCD_05455 0a205f81a45383b2252a76bf5fe34c0d 443 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 6 443 2.9E-205 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 HCD_05455 0a205f81a45383b2252a76bf5fe34c0d 443 Pfam PF07724 AAA domain (Cdc48 subfamily) 203 328 4.3E-35 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 HCD_05455 0a205f81a45383b2252a76bf5fe34c0d 443 Pfam PF07724 AAA domain (Cdc48 subfamily) 54 117 2.0E-6 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 HCD_05455 0a205f81a45383b2252a76bf5fe34c0d 443 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 335 405 4.1E-6 T 13-10-2018 IPR019489 Clp ATPase, C-terminal HCD_05455 0a205f81a45383b2252a76bf5fe34c0d 443 SMART SM01086 335 426 4.6E-20 T 13-10-2018 IPR019489 Clp ATPase, C-terminal HCD_05455 0a205f81a45383b2252a76bf5fe34c0d 443 SUPERFAMILY SSF52540 6 435 2.37E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_05455 0a205f81a45383b2252a76bf5fe34c0d 443 SMART SM00382 51 332 2.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_04780 ee66f4d8f03be2130f74f479cd01e013 902 Gene3D G3DSA:3.90.640.50 29 105 1.9E-8 T 13-10-2018 HCD_04780 ee66f4d8f03be2130f74f479cd01e013 902 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 3 192 9.1E-14 T 13-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 HCD_04780 ee66f4d8f03be2130f74f479cd01e013 902 Gene3D G3DSA:3.90.1570.50 5 226 1.9E-8 T 13-10-2018 HCD_04780 ee66f4d8f03be2130f74f479cd01e013 902 Gene3D G3DSA:3.40.50.300 238 412 1.6E-27 T 13-10-2018 HCD_04780 ee66f4d8f03be2130f74f479cd01e013 902 SMART SM00487 234 430 2.7E-13 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain HCD_04780 ee66f4d8f03be2130f74f479cd01e013 902 SUPERFAMILY SSF52540 217 450 2.87E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04780 ee66f4d8f03be2130f74f479cd01e013 902 SUPERFAMILY SSF52540 358 625 9.81E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04780 ee66f4d8f03be2130f74f479cd01e013 902 Pfam PF04851 Type III restriction enzyme, res subunit 238 399 5.0E-16 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 HCD_04780 ee66f4d8f03be2130f74f479cd01e013 902 Gene3D G3DSA:3.40.50.300 530 646 5.4E-25 T 13-10-2018 HCD_08040 e100b9b156f5581f977af8b16c5241f8 545 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 204 537 1.3E-69 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 HCD_08040 e100b9b156f5581f977af8b16c5241f8 545 Pfam PF00939 Sodium:sulfate symporter transmembrane region 29 534 1.1E-84 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 Gene3D G3DSA:3.40.50.300 3 281 5.9E-142 T 13-10-2018 HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 Gene3D G3DSA:3.10.20.30 49 364 5.9E-142 T 13-10-2018 IPR012675 Beta-grasp domain superfamily HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 Gene3D G3DSA:1.10.150.300 114 202 5.9E-142 T 13-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 SUPERFAMILY SSF52540 3 303 1.52E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 366 41.174 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 SUPERFAMILY SSF81271 282 366 8.72E-35 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 PIRSF PIRSF006641 1 366 4.7E-150 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 Pfam PF06071 Protein of unknown function (DUF933) 282 365 3.9E-39 T 13-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 Pfam PF01926 50S ribosome-binding GTPase 5 128 1.1E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 366 3.3E-140 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 7.1E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 88 106 7.1E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 7.1E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_01415 64ccd5f4f3c1b55a771ffef541029cdc 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 71 86 7.1E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_07475 4482420b72712f026d3a6270e2493d99 379 TIGRFAM TIGR03588 PseC: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase 4 368 6.4E-138 T 13-10-2018 IPR020026 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase HCD_07475 4482420b72712f026d3a6270e2493d99 379 SUPERFAMILY SSF53383 4 370 1.08E-97 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase HCD_07475 4482420b72712f026d3a6270e2493d99 379 Gene3D G3DSA:3.40.640.10 1 245 6.0E-79 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 HCD_07475 4482420b72712f026d3a6270e2493d99 379 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 11 364 2.1E-107 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase HCD_07475 4482420b72712f026d3a6270e2493d99 379 Gene3D G3DSA:3.90.1150.10 246 373 1.1E-30 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 HCD_07475 4482420b72712f026d3a6270e2493d99 379 PIRSF PIRSF000390 1 372 1.8E-110 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase HCD_04220 5b31c7d189e15ed00765be1c30c8df86 273 SUPERFAMILY SSF54675 2 102 6.48E-23 T 13-10-2018 HCD_04220 5b31c7d189e15ed00765be1c30c8df86 273 Gene3D G3DSA:3.90.1170.20 9 268 7.4E-99 T 13-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 HCD_04220 5b31c7d189e15ed00765be1c30c8df86 273 PIRSF PIRSF006250 1 273 8.2E-81 T 13-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 HCD_04220 5b31c7d189e15ed00765be1c30c8df86 273 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 16 101 1.0E-18 T 13-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 HCD_04220 5b31c7d189e15ed00765be1c30c8df86 273 SUPERFAMILY SSF51690 103 272 8.24E-54 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 HCD_04220 5b31c7d189e15ed00765be1c30c8df86 273 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 103 271 4.8E-64 T 13-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 HCD_04220 5b31c7d189e15ed00765be1c30c8df86 273 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 7 272 1.0E-86 T 13-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 HCD_04220 5b31c7d189e15ed00765be1c30c8df86 273 Gene3D G3DSA:3.20.20.70 117 262 7.4E-99 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_03360 9f49e148a0b9420c1a5737217d4ccac9 144 Gene3D G3DSA:1.20.120.1430 15 108 4.7E-19 T 13-10-2018 HCD_03360 9f49e148a0b9420c1a5737217d4ccac9 144 Pfam PF06518 Protein of unknown function (DUF1104) 24 112 5.3E-23 T 13-10-2018 IPR009488 Protein of unknown function DUF1104 HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 449 606 3.3E-33 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 SUPERFAMILY SSF52156 725 855 6.67E-33 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 6 946 15.884 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 ProSitePatterns PS01176 Initiation factor 2 signature. 899 921 - T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 SUPERFAMILY SSF52540 438 612 9.66E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 Gene3D G3DSA:3.40.50.10050 741 848 3.7E-33 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 SUPERFAMILY SSF50447 621 702 4.57E-20 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 Gene3D G3DSA:2.40.30.10 849 947 4.5E-32 T 13-10-2018 HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 Pfam PF00009 Elongation factor Tu GTP binding domain 452 607 9.3E-33 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 Gene3D G3DSA:2.40.30.10 619 738 1.3E-31 T 13-10-2018 HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 367 948 2.1E-274 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 Pfam PF11987 Translation-initiation factor 2 734 837 1.6E-33 T 13-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 Gene3D G3DSA:3.40.50.300 445 618 2.6E-66 T 13-10-2018 HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 SUPERFAMILY SSF50447 850 946 3.33E-32 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily HCD_08170 7cca2504eb5c0276bf7d089611606a9d 948 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 375 423 3.0E-12 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal HCD_03900 a91366ad9ffb8c7a457bc9e6856c6319 355 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 HCD_03900 a91366ad9ffb8c7a457bc9e6856c6319 355 Gene3D G3DSA:3.30.479.20 57 148 3.1E-22 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 HCD_03900 a91366ad9ffb8c7a457bc9e6856c6319 355 SUPERFAMILY SSF46934 4 55 1.91E-18 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 HCD_03900 a91366ad9ffb8c7a457bc9e6856c6319 355 Gene3D G3DSA:1.10.8.10 1 56 2.1E-26 T 13-10-2018 HCD_03900 a91366ad9ffb8c7a457bc9e6856c6319 355 Gene3D G3DSA:1.10.286.20 246 287 2.9E-7 T 13-10-2018 HCD_03900 a91366ad9ffb8c7a457bc9e6856c6319 355 Hamap MF_00050 Elongation factor Ts [tsf]. 1 354 58.867 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 HCD_03900 a91366ad9ffb8c7a457bc9e6856c6319 355 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 HCD_03900 a91366ad9ffb8c7a457bc9e6856c6319 355 Pfam PF00889 Elongation factor TS 73 228 6.3E-45 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 HCD_03900 a91366ad9ffb8c7a457bc9e6856c6319 355 Pfam PF00889 Elongation factor TS 239 337 8.9E-23 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 HCD_03900 a91366ad9ffb8c7a457bc9e6856c6319 355 SUPERFAMILY SSF54713 54 337 6.95E-30 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 HCD_03900 a91366ad9ffb8c7a457bc9e6856c6319 355 SUPERFAMILY SSF54713 153 233 2.35E-12 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 HCD_03900 a91366ad9ffb8c7a457bc9e6856c6319 355 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 355 8.4E-124 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 HCD_05230 85faf029721b227b485818d9717a4ca4 154 Gene3D G3DSA:1.10.10.10 75 154 7.7E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_05230 85faf029721b227b485818d9717a4ca4 154 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 78 149 2.7E-28 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 HCD_05230 85faf029721b227b485818d9717a4ca4 154 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 126 132 - T 13-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 HCD_05230 85faf029721b227b485818d9717a4ca4 154 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 76 151 2.2E-32 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 HCD_05230 85faf029721b227b485818d9717a4ca4 154 SUPERFAMILY SSF53155 15 81 3.45E-6 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 HCD_05230 85faf029721b227b485818d9717a4ca4 154 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 7 72 1.3E-9 T 13-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 HCD_05230 85faf029721b227b485818d9717a4ca4 154 SUPERFAMILY SSF46767 75 151 2.35E-28 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 HCD_02370 2a827fe8c34e0739a8cb27cf121653c1 436 SUPERFAMILY SSF102114 141 363 1.57E-54 T 13-10-2018 HCD_02370 2a827fe8c34e0739a8cb27cf121653c1 436 SMART SM00729 138 359 6.7E-58 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 HCD_02370 2a827fe8c34e0739a8cb27cf121653c1 436 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 1 435 62.639 T 13-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 HCD_02370 2a827fe8c34e0739a8cb27cf121653c1 436 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 2 432 1.1E-150 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 HCD_02370 2a827fe8c34e0739a8cb27cf121653c1 436 Gene3D G3DSA:3.80.30.20 136 372 6.5E-83 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe HCD_02370 2a827fe8c34e0739a8cb27cf121653c1 436 Pfam PF00919 Uncharacterized protein family UPF0004 2 99 9.7E-29 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 HCD_02370 2a827fe8c34e0739a8cb27cf121653c1 436 Pfam PF04055 Radical SAM superfamily 143 316 7.8E-30 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 HCD_02370 2a827fe8c34e0739a8cb27cf121653c1 436 Gene3D G3DSA:3.40.50.12160 1 133 1.2E-32 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily HCD_02370 2a827fe8c34e0739a8cb27cf121653c1 436 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 142 162 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 HCD_02370 2a827fe8c34e0739a8cb27cf121653c1 436 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 2 429 9.6E-158 T 13-10-2018 HCD_00060 fd40327e3d75c1703d124957059c2e9a 381 Gene3D G3DSA:3.40.50.720 6 346 1.9E-154 T 13-10-2018 HCD_00060 fd40327e3d75c1703d124957059c2e9a 381 Gene3D G3DSA:3.90.25.10 195 360 1.9E-154 T 13-10-2018 HCD_00060 fd40327e3d75c1703d124957059c2e9a 381 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 4 365 54.027 T 13-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 HCD_00060 fd40327e3d75c1703d124957059c2e9a 381 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 4 363 4.0E-192 T 13-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 HCD_00060 fd40327e3d75c1703d124957059c2e9a 381 SUPERFAMILY SSF51735 4 361 4.62E-82 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_00060 fd40327e3d75c1703d124957059c2e9a 381 Pfam PF16363 GDP-mannose 4,6 dehydratase 7 355 9.9E-149 T 13-10-2018 IPR016040 NAD(P)-binding domain HCD_00110 242b3b407f9e6e7d5b426b69e7791037 118 SUPERFAMILY SSF50692 1 115 6.21E-47 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily HCD_00110 242b3b407f9e6e7d5b426b69e7791037 118 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 118 61.597 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 HCD_00110 242b3b407f9e6e7d5b426b69e7791037 118 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 95 2.0E-42 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 HCD_00110 242b3b407f9e6e7d5b426b69e7791037 118 PIRSF PIRSF006246 1 118 8.5E-47 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 HCD_00110 242b3b407f9e6e7d5b426b69e7791037 118 Pfam PF02261 Aspartate decarboxylase 1 113 5.0E-48 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 HCD_00110 242b3b407f9e6e7d5b426b69e7791037 118 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 116 5.3E-58 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 HCD_00110 242b3b407f9e6e7d5b426b69e7791037 118 Gene3D G3DSA:2.40.40.20 1 118 8.8E-48 T 13-10-2018 HCD_02890 5ca5e4eefb04f31183ffe0db6f222a05 141 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 140 1.8E-64 T 13-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_02890 5ca5e4eefb04f31183ffe0db6f222a05 141 ProSitePatterns PS00359 Ribosomal protein L11 signature. 126 141 - T 13-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_02890 5ca5e4eefb04f31183ffe0db6f222a05 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 71 139 2.6E-21 T 13-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 HCD_02890 5ca5e4eefb04f31183ffe0db6f222a05 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 73 7.0E-16 T 13-10-2018 HCD_02890 5ca5e4eefb04f31183ffe0db6f222a05 141 SUPERFAMILY SSF54747 3 71 3.66E-30 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily HCD_02890 5ca5e4eefb04f31183ffe0db6f222a05 141 Gene3D G3DSA:1.10.10.2720 72 141 1.5E-25 T 13-10-2018 HCD_02890 5ca5e4eefb04f31183ffe0db6f222a05 141 SUPERFAMILY SSF46906 67 139 1.07E-23 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily HCD_02890 5ca5e4eefb04f31183ffe0db6f222a05 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 66 4.5E-30 T 13-10-2018 IPR020784 Ribosomal protein L11, N-terminal HCD_02890 5ca5e4eefb04f31183ffe0db6f222a05 141 Gene3D G3DSA:3.30.1550.10 2 71 2.6E-34 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily HCD_02890 5ca5e4eefb04f31183ffe0db6f222a05 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 141 29.765 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 HCD_02890 5ca5e4eefb04f31183ffe0db6f222a05 141 SMART SM00649 9 140 2.5E-79 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 HCD_07565 e83e13da8147113811320eaaac60cfd4 130 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 24 127 4.7E-14 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 HCD_07565 e83e13da8147113811320eaaac60cfd4 130 Gene3D G3DSA:2.30.30.110 10 130 2.3E-13 T 13-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor HCD_07565 e83e13da8147113811320eaaac60cfd4 130 SUPERFAMILY SSF50118 21 126 1.63E-13 T 13-10-2018 HCD_00015 12da180888558997b2c9b8b92df74035 271 Gene3D G3DSA:3.20.20.70 2 271 5.4E-99 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_00015 12da180888558997b2c9b8b92df74035 271 Pfam PF00793 DAHP synthetase I family 5 260 2.9E-61 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 HCD_00015 12da180888558997b2c9b8b92df74035 271 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 5 270 1.3E-123 T 13-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 HCD_00015 12da180888558997b2c9b8b92df74035 271 SUPERFAMILY SSF51569 6 270 1.28E-87 T 13-10-2018 HCD_00015 12da180888558997b2c9b8b92df74035 271 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 1 271 48.368 T 13-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 HCD_00375 8cd177cbe840df5ff31f3dcad9b2ebec 326 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 326 40.12 T 13-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 HCD_00375 8cd177cbe840df5ff31f3dcad9b2ebec 326 Gene3D G3DSA:1.10.240.10 186 295 5.0E-125 T 13-10-2018 HCD_00375 8cd177cbe840df5ff31f3dcad9b2ebec 326 Gene3D G3DSA:3.40.50.620 6 324 5.0E-125 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_00375 8cd177cbe840df5ff31f3dcad9b2ebec 326 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_00375 8cd177cbe840df5ff31f3dcad9b2ebec 326 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 325 3.2E-119 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 HCD_00375 8cd177cbe840df5ff31f3dcad9b2ebec 326 Pfam PF00579 tRNA synthetases class I (W and Y) 4 282 1.3E-80 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_00375 8cd177cbe840df5ff31f3dcad9b2ebec 326 SUPERFAMILY SSF52374 4 325 1.54E-89 T 13-10-2018 HCD_00375 8cd177cbe840df5ff31f3dcad9b2ebec 326 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 5.2E-25 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 HCD_00375 8cd177cbe840df5ff31f3dcad9b2ebec 326 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 195 205 5.2E-25 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 HCD_00375 8cd177cbe840df5ff31f3dcad9b2ebec 326 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 5.2E-25 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 HCD_00375 8cd177cbe840df5ff31f3dcad9b2ebec 326 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 5.2E-25 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 HCD_06445 9ea5bd8debf55dc53a7e532e9b42bdd6 641 Gene3D G3DSA:3.40.50.920 522 641 3.9E-34 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 HCD_06445 9ea5bd8debf55dc53a7e532e9b42bdd6 641 ProSitePatterns PS00801 Transketolase signature 1. 19 39 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 HCD_06445 9ea5bd8debf55dc53a7e532e9b42bdd6 641 SMART SM00861 344 510 4.5E-53 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain HCD_06445 9ea5bd8debf55dc53a7e532e9b42bdd6 641 Pfam PF02779 Transketolase, pyrimidine binding domain 343 509 3.3E-37 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain HCD_06445 9ea5bd8debf55dc53a7e532e9b42bdd6 641 SUPERFAMILY SSF52518 335 512 1.86E-55 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold HCD_06445 9ea5bd8debf55dc53a7e532e9b42bdd6 641 SUPERFAMILY SSF52922 516 640 5.37E-34 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 HCD_06445 9ea5bd8debf55dc53a7e532e9b42bdd6 641 SUPERFAMILY SSF52518 5 314 4.55E-103 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold HCD_06445 9ea5bd8debf55dc53a7e532e9b42bdd6 641 Pfam PF02780 Transketolase, C-terminal domain 524 574 1.1E-7 T 13-10-2018 IPR033248 Transketolase, C-terminal domain HCD_06445 9ea5bd8debf55dc53a7e532e9b42bdd6 641 Gene3D G3DSA:3.40.50.970 324 519 2.6E-64 T 13-10-2018 HCD_06445 9ea5bd8debf55dc53a7e532e9b42bdd6 641 ProSitePatterns PS00802 Transketolase signature 2. 453 469 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 HCD_06445 9ea5bd8debf55dc53a7e532e9b42bdd6 641 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 13 321 6.7E-114 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 HCD_06445 9ea5bd8debf55dc53a7e532e9b42bdd6 641 TIGRFAM TIGR00232 tktlase_bact: transketolase 12 640 4.0E-264 T 13-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 HCD_06445 9ea5bd8debf55dc53a7e532e9b42bdd6 641 Gene3D G3DSA:3.40.50.970 7 323 2.9E-109 T 13-10-2018 HCD_07695 6881cdfb6c322a789191f0fb7de1f896 226 SUPERFAMILY SSF69618 20 219 1.7E-35 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_07695 6881cdfb6c322a789191f0fb7de1f896 226 Pfam PF02602 Uroporphyrinogen-III synthase HemD 29 215 2.6E-34 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_07695 6881cdfb6c322a789191f0fb7de1f896 226 Gene3D G3DSA:3.40.50.10090 25 220 3.3E-75 T 13-10-2018 HCD_07695 6881cdfb6c322a789191f0fb7de1f896 226 Gene3D G3DSA:3.40.50.10090 26 138 3.3E-75 T 13-10-2018 HCD_04970 882f26998d2a9db692a4e0dcabbe49c2 1212 SUPERFAMILY SSF89550 7 279 1.86E-34 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 HCD_04970 882f26998d2a9db692a4e0dcabbe49c2 1212 Gene3D G3DSA:1.10.150.870 783 919 3.8E-5 T 13-10-2018 HCD_04970 882f26998d2a9db692a4e0dcabbe49c2 1212 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 322 760 7.2E-173 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04970 882f26998d2a9db692a4e0dcabbe49c2 1212 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 7 1069 0.0 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04970 882f26998d2a9db692a4e0dcabbe49c2 1212 SMART SM00481 8 75 2.5E-31 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal HCD_04970 882f26998d2a9db692a4e0dcabbe49c2 1212 Pfam PF14579 Helix-hairpin-helix motif 836 932 7.7E-23 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04970 882f26998d2a9db692a4e0dcabbe49c2 1212 Gene3D G3DSA:3.20.20.140 1 285 8.4E-101 T 13-10-2018 HCD_04970 882f26998d2a9db692a4e0dcabbe49c2 1212 SUPERFAMILY SSF160975 869 911 6.8E-6 T 13-10-2018 HCD_04970 882f26998d2a9db692a4e0dcabbe49c2 1212 Pfam PF02811 PHP domain 9 189 3.1E-51 T 13-10-2018 IPR004013 PHP domain GO:0003824 HCD_04970 882f26998d2a9db692a4e0dcabbe49c2 1212 Gene3D G3DSA:1.10.10.1600 458 545 6.9E-25 T 13-10-2018 HCD_01700 fca658e417f1c526622456d20931655d 219 Pfam PF02581 Thiamine monophosphate synthase 11 202 1.3E-56 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01700 fca658e417f1c526622456d20931655d 219 SUPERFAMILY SSF51391 17 215 3.79E-55 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01700 fca658e417f1c526622456d20931655d 219 Gene3D G3DSA:3.20.20.70 3 219 1.4E-58 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_01700 fca658e417f1c526622456d20931655d 219 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 19 214 1.8E-58 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01700 fca658e417f1c526622456d20931655d 219 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 7 217 24.474 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01565 263f12b74df5c378a7af1967f7e186c1 422 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 98 121 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 HCD_01565 263f12b74df5c378a7af1967f7e186c1 422 SUPERFAMILY SSF53623 88 230 2.88E-30 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 HCD_01565 263f12b74df5c378a7af1967f7e186c1 422 Gene3D G3DSA:3.40.1190.10 86 281 6.1E-31 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 HCD_01565 263f12b74df5c378a7af1967f7e186c1 422 Gene3D G3DSA:3.90.190.20 284 419 1.2E-32 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 HCD_01565 263f12b74df5c378a7af1967f7e186c1 422 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 2 419 8.8E-116 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 HCD_01565 263f12b74df5c378a7af1967f7e186c1 422 Pfam PF08245 Mur ligase middle domain 100 225 1.4E-16 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 HCD_01565 263f12b74df5c378a7af1967f7e186c1 422 SUPERFAMILY SSF53244 285 420 5.04E-32 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 HCD_01565 263f12b74df5c378a7af1967f7e186c1 422 Pfam PF02875 Mur ligase family, glutamate ligase domain 287 351 1.4E-6 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 HCD_03045 8ae523bebb948e898f72e4090f54284c 187 Gene3D G3DSA:2.40.50.140 66 128 6.7E-25 T 13-10-2018 HCD_03045 8ae523bebb948e898f72e4090f54284c 187 Gene3D G3DSA:2.30.30.30 2 63 1.3E-24 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 HCD_03045 8ae523bebb948e898f72e4090f54284c 187 SMART SM01185 68 122 5.5E-28 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 HCD_03045 8ae523bebb948e898f72e4090f54284c 187 Gene3D G3DSA:2.40.50.140 129 187 6.0E-24 T 13-10-2018 HCD_03045 8ae523bebb948e898f72e4090f54284c 187 Hamap MF_00141 Elongation factor P [efp]. 2 186 49.173 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 HCD_03045 8ae523bebb948e898f72e4090f54284c 187 SMART SM00841 130 185 3.8E-29 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 HCD_03045 8ae523bebb948e898f72e4090f54284c 187 SUPERFAMILY SSF50249 130 186 2.57E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_03045 8ae523bebb948e898f72e4090f54284c 187 Pfam PF09285 Elongation factor P, C-terminal 130 185 4.0E-22 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 HCD_03045 8ae523bebb948e898f72e4090f54284c 187 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 60 6.4E-25 T 13-10-2018 IPR013185 Translation elongation factor, KOW-like HCD_03045 8ae523bebb948e898f72e4090f54284c 187 PIRSF PIRSF005901 1 187 1.2E-67 T 13-10-2018 IPR020599 Translation elongation factor P/YeiP HCD_03045 8ae523bebb948e898f72e4090f54284c 187 ProSitePatterns PS01275 Elongation factor P signature. 151 170 - T 13-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site HCD_03045 8ae523bebb948e898f72e4090f54284c 187 TIGRFAM TIGR00038 efp: translation elongation factor P 5 186 3.5E-75 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 HCD_03045 8ae523bebb948e898f72e4090f54284c 187 Pfam PF01132 Elongation factor P (EF-P) OB domain 69 122 3.4E-23 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 HCD_03045 8ae523bebb948e898f72e4090f54284c 187 SUPERFAMILY SSF50104 2 64 1.1E-19 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily HCD_03045 8ae523bebb948e898f72e4090f54284c 187 SUPERFAMILY SSF50249 66 127 1.46E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_01400 f256d40762868c3caeb94052efc7b795 179 Pfam PF00156 Phosphoribosyl transferase domain 35 156 6.5E-16 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 HCD_01400 f256d40762868c3caeb94052efc7b795 179 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 9 179 34.491 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 HCD_01400 f256d40762868c3caeb94052efc7b795 179 SUPERFAMILY SSF53271 8 172 1.57E-45 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like HCD_01400 f256d40762868c3caeb94052efc7b795 179 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 10 178 1.1E-70 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 HCD_01400 f256d40762868c3caeb94052efc7b795 179 Gene3D G3DSA:3.40.50.2020 2 178 2.3E-55 T 13-10-2018 HCD_00105 6f4db5055fc3ebdce883eb77c5ef39e6 97 SUPERFAMILY SSF82607 4 92 9.94E-18 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily HCD_00105 6f4db5055fc3ebdce883eb77c5ef39e6 97 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 97 1.2E-28 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family HCD_00105 6f4db5055fc3ebdce883eb77c5ef39e6 97 Gene3D G3DSA:3.30.1310.10 1 97 1.8E-40 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily HCD_00105 6f4db5055fc3ebdce883eb77c5ef39e6 97 PIRSF PIRSF004555 1 96 1.7E-17 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family HCD_00105 6f4db5055fc3ebdce883eb77c5ef39e6 97 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 1 93 15.367 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family HCD_00105 6f4db5055fc3ebdce883eb77c5ef39e6 97 Pfam PF02575 YbaB/EbfC DNA-binding family 13 92 2.3E-16 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family HCD_05915 111a7d5be82f7e52b6e147b1c0ead177 303 SUPERFAMILY SSF48576 9 279 1.82E-69 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily HCD_05915 111a7d5be82f7e52b6e147b1c0ead177 303 Gene3D G3DSA:1.10.600.10 1 301 7.0E-109 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily HCD_05915 111a7d5be82f7e52b6e147b1c0ead177 303 Pfam PF00348 Polyprenyl synthetase 32 274 1.2E-46 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 HCD_05915 111a7d5be82f7e52b6e147b1c0ead177 303 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 220 232 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site HCD_08595 c8ed67407471d75fe3bd71a4ba8dc953 291 TIGRFAM TIGR00571 dam: DNA adenine methylase 14 285 5.7E-86 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_08595 c8ed67407471d75fe3bd71a4ba8dc953 291 SUPERFAMILY SSF53335 13 286 1.27E-76 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_08595 c8ed67407471d75fe3bd71a4ba8dc953 291 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 19 35 3.3E-15 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_08595 c8ed67407471d75fe3bd71a4ba8dc953 291 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 41 55 3.3E-15 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_08595 c8ed67407471d75fe3bd71a4ba8dc953 291 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 66 79 3.3E-15 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_08595 c8ed67407471d75fe3bd71a4ba8dc953 291 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 194 206 3.3E-15 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_08595 c8ed67407471d75fe3bd71a4ba8dc953 291 Gene3D G3DSA:3.40.50.150 15 261 1.2E-85 T 13-10-2018 HCD_08595 c8ed67407471d75fe3bd71a4ba8dc953 291 Gene3D G3DSA:1.10.1020.10 73 175 1.2E-85 T 13-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 HCD_08595 c8ed67407471d75fe3bd71a4ba8dc953 291 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 197 203 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_08595 c8ed67407471d75fe3bd71a4ba8dc953 291 PIRSF PIRSF000398 10 289 7.2E-74 T 13-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 HCD_08595 c8ed67407471d75fe3bd71a4ba8dc953 291 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 19 262 1.9E-61 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_00100 524a3aa884cf219ac8440fd1b889b3d1 331 SUPERFAMILY SSF50156 195 249 2.0E-6 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 HCD_00100 524a3aa884cf219ac8440fd1b889b3d1 331 Pfam PF13180 PDZ domain 167 244 3.3E-11 T 13-10-2018 IPR001478 PDZ domain GO:0005515 HCD_00100 524a3aa884cf219ac8440fd1b889b3d1 331 SUPERFAMILY SSF50156 237 328 1.06E-5 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 HCD_03750 5d6a7604f1d7d4439f7a77fe00d14515 600 Pfam PF00905 Penicillin binding protein transpeptidase domain 252 572 3.1E-53 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 HCD_03750 5d6a7604f1d7d4439f7a77fe00d14515 600 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 5 576 1.5E-163 T 13-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 HCD_03750 5d6a7604f1d7d4439f7a77fe00d14515 600 SUPERFAMILY SSF56519 42 234 1.31E-35 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 HCD_03750 5d6a7604f1d7d4439f7a77fe00d14515 600 Gene3D G3DSA:3.30.1390.30 70 147 2.1E-32 T 13-10-2018 HCD_03750 5d6a7604f1d7d4439f7a77fe00d14515 600 Gene3D G3DSA:3.40.710.10 234 583 4.3E-79 T 13-10-2018 HCD_03750 5d6a7604f1d7d4439f7a77fe00d14515 600 Gene3D G3DSA:3.90.1310.10 51 225 2.1E-32 T 13-10-2018 HCD_03750 5d6a7604f1d7d4439f7a77fe00d14515 600 Pfam PF03717 Penicillin-binding Protein dimerisation domain 51 220 3.2E-33 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 HCD_03750 5d6a7604f1d7d4439f7a77fe00d14515 600 SUPERFAMILY SSF56601 235 573 6.84E-79 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like HCD_04650 7f003207cdd5ae6fd9edfff08c504203 161 SUPERFAMILY SSF52206 21 101 5.75E-15 T 13-10-2018 IPR036490 Hypothetical protein MTH538 superfamily HCD_04650 7f003207cdd5ae6fd9edfff08c504203 161 Pfam PF08937 MTH538 TIR-like domain (DUF1863) 4 114 2.6E-28 T 13-10-2018 IPR015032 MTH538 TIR-like domain HCD_04650 7f003207cdd5ae6fd9edfff08c504203 161 Gene3D G3DSA:3.40.50.10140 3 126 4.8E-8 T 13-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily HCD_03885 9f311c2cdabb71c025c5985b4d32a8f0 437 Pfam PF06965 Na+/H+ antiporter 1 15 426 3.6E-149 T 13-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 HCD_03885 9f311c2cdabb71c025c5985b4d32a8f0 437 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 13 432 22.9 T 13-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 HCD_03885 9f311c2cdabb71c025c5985b4d32a8f0 437 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 16 426 1.2E-177 T 13-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 HCD_03885 9f311c2cdabb71c025c5985b4d32a8f0 437 Gene3D G3DSA:1.20.1530.10 279 434 1.5E-47 T 13-10-2018 IPR023171 Na/H antiporter domain superfamily HCD_03885 9f311c2cdabb71c025c5985b4d32a8f0 437 Gene3D G3DSA:1.20.1530.10 11 274 4.4E-95 T 13-10-2018 IPR023171 Na/H antiporter domain superfamily HCD_01980 fda8d434cef00e7de2bae8274a79cd39 410 Pfam PF01266 FAD dependent oxidoreductase 4 389 2.2E-55 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 HCD_01980 fda8d434cef00e7de2bae8274a79cd39 410 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 9.8E-5 T 13-10-2018 HCD_01980 fda8d434cef00e7de2bae8274a79cd39 410 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 240 254 9.8E-5 T 13-10-2018 HCD_01980 fda8d434cef00e7de2bae8274a79cd39 410 Gene3D G3DSA:3.50.50.60 1 86 4.9E-16 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_01980 fda8d434cef00e7de2bae8274a79cd39 410 Gene3D G3DSA:3.50.50.60 108 389 3.0E-34 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_01980 fda8d434cef00e7de2bae8274a79cd39 410 SUPERFAMILY SSF51905 2 397 2.33E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_01980 fda8d434cef00e7de2bae8274a79cd39 410 SUPERFAMILY SSF54373 263 350 1.83E-5 T 13-10-2018 HCD_01980 fda8d434cef00e7de2bae8274a79cd39 410 Gene3D G3DSA:3.30.9.10 134 349 3.0E-34 T 13-10-2018 HCD_06720 d066782bae64969b1e65489b8ee3fe83 93 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 20 88 1.0E-8 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 HCD_06720 d066782bae64969b1e65489b8ee3fe83 93 Gene3D G3DSA:1.10.20.60 1 91 1.3E-12 T 13-10-2018 HCD_06720 d066782bae64969b1e65489b8ee3fe83 93 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 3 93 9.3E-23 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 HCD_06720 d066782bae64969b1e65489b8ee3fe83 93 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 93 16.781 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 HCD_06720 d066782bae64969b1e65489b8ee3fe83 93 SUPERFAMILY SSF141000 2 91 5.1E-14 T 13-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 HCD_04135 7289b6f3380c0ec1a509719ebb89eafd 87 Pfam PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ 5 86 4.0E-26 T 13-10-2018 IPR004386 Toxin-antitoxin system, YafQ-like toxin HCD_04135 7289b6f3380c0ec1a509719ebb89eafd 87 Gene3D G3DSA:3.30.2310.20 2 87 5.3E-25 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily HCD_04135 7289b6f3380c0ec1a509719ebb89eafd 87 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 20 85 4.3E-17 T 13-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family HCD_04135 7289b6f3380c0ec1a509719ebb89eafd 87 PIRSF PIRSF006156 2 87 4.7E-21 T 13-10-2018 IPR004386 Toxin-antitoxin system, YafQ-like toxin HCD_04135 7289b6f3380c0ec1a509719ebb89eafd 87 SUPERFAMILY SSF143011 5 85 3.34E-19 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily HCD_05080 42bb63583c684e9bed90190cdd0d01b9 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 139 214 8.2E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 HCD_05080 42bb63583c684e9bed90190cdd0d01b9 223 Pfam PF00072 Response regulator receiver domain 3 109 3.7E-8 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_05080 42bb63583c684e9bed90190cdd0d01b9 223 SMART SM00448 1 109 3.4E-8 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_05080 42bb63583c684e9bed90190cdd0d01b9 223 SUPERFAMILY SSF52172 1 170 3.27E-17 T 13-10-2018 IPR011006 CheY-like superfamily HCD_05080 42bb63583c684e9bed90190cdd0d01b9 223 SMART SM00862 139 214 1.0E-18 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 HCD_05080 42bb63583c684e9bed90190cdd0d01b9 223 Gene3D G3DSA:1.10.10.10 119 223 3.2E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_05080 42bb63583c684e9bed90190cdd0d01b9 223 SUPERFAMILY SSF46894 115 215 3.68E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 HCD_05080 42bb63583c684e9bed90190cdd0d01b9 223 Gene3D G3DSA:3.40.50.2300 1 118 2.1E-39 T 13-10-2018 HCD_07350 4e044225d2479c16e3bff31bcb037055 309 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 308 32.052 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07350 4e044225d2479c16e3bff31bcb037055 309 Pfam PF00231 ATP synthase 3 308 1.0E-83 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07350 4e044225d2479c16e3bff31bcb037055 309 Gene3D G3DSA:3.40.1380.10 61 225 2.3E-84 T 13-10-2018 HCD_07350 4e044225d2479c16e3bff31bcb037055 309 PRINTS PR00126 ATP synthase gamma subunit signature 81 100 4.2E-32 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07350 4e044225d2479c16e3bff31bcb037055 309 PRINTS PR00126 ATP synthase gamma subunit signature 255 274 4.2E-32 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07350 4e044225d2479c16e3bff31bcb037055 309 PRINTS PR00126 ATP synthase gamma subunit signature 174 191 4.2E-32 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07350 4e044225d2479c16e3bff31bcb037055 309 PRINTS PR00126 ATP synthase gamma subunit signature 286 307 4.2E-32 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07350 4e044225d2479c16e3bff31bcb037055 309 Gene3D G3DSA:1.10.287.80 6 304 2.3E-84 T 13-10-2018 HCD_07350 4e044225d2479c16e3bff31bcb037055 309 SUPERFAMILY SSF52943 2 308 1.44E-79 T 13-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07350 4e044225d2479c16e3bff31bcb037055 309 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 308 2.7E-100 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 SUPERFAMILY SSF51246 328 421 2.67E-20 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 SUPERFAMILY SSF56059 106 320 1.7E-44 T 13-10-2018 HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 331 419 2.4E-17 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 7 421 2.6E-139 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 Gene3D G3DSA:3.30.470.20 187 328 1.3E-38 T 13-10-2018 HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 Gene3D G3DSA:3.40.50.20 8 97 2.7E-22 T 13-10-2018 HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 105 295 1.5E-55 T 13-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 SUPERFAMILY SSF52440 7 104 7.77E-21 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 Gene3D G3DSA:3.30.1490.20 124 186 4.0E-15 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 8 104 2.4E-22 T 13-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 SMART SM01209 105 295 2.6E-64 T 13-10-2018 HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 Gene3D G3DSA:3.90.600.10 329 427 5.3E-21 T 13-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 7 421 33.297 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 HCD_02965 89edd961ebea4c06a25eda1397f49a39 427 SMART SM01210 329 421 5.4E-27 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 HCD_04540 cdcf827706a885e7bb76fe2a529ba69c 277 ProSitePatterns PS00093 N-4 cytosine-specific DNA methylases signature. 13 18 - T 13-10-2018 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site GO:0003677|GO:0015667|GO:0090124 HCD_04540 cdcf827706a885e7bb76fe2a529ba69c 277 Gene3D G3DSA:3.40.50.150 1 274 1.8E-59 T 13-10-2018 HCD_04540 cdcf827706a885e7bb76fe2a529ba69c 277 SUPERFAMILY SSF53335 2 269 1.55E-43 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_04540 cdcf827706a885e7bb76fe2a529ba69c 277 Pfam PF01555 DNA methylase 9 265 7.4E-49 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 HCD_04540 cdcf827706a885e7bb76fe2a529ba69c 277 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 249 269 1.6E-29 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_04540 cdcf827706a885e7bb76fe2a529ba69c 277 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 207 224 1.6E-29 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_04540 cdcf827706a885e7bb76fe2a529ba69c 277 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 226 244 1.6E-29 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_04540 cdcf827706a885e7bb76fe2a529ba69c 277 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 8 22 1.6E-29 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_04540 cdcf827706a885e7bb76fe2a529ba69c 277 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 58 78 1.6E-29 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_00340 03989c4a3838be099d9c4a17111125bb 142 Gene3D G3DSA:3.30.70.60 1 104 1.2E-32 T 13-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 HCD_00340 03989c4a3838be099d9c4a17111125bb 142 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 3.9E-36 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00340 03989c4a3838be099d9c4a17111125bb 142 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 22.634 T 13-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 HCD_00340 03989c4a3838be099d9c4a17111125bb 142 Pfam PF01250 Ribosomal protein S6 3 92 2.2E-29 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00340 03989c4a3838be099d9c4a17111125bb 142 SUPERFAMILY SSF54995 1 100 8.24E-35 T 13-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00340 03989c4a3838be099d9c4a17111125bb 142 ProSitePatterns PS01048 Ribosomal protein S6 signature. 44 53 - T 13-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 HCD_07705 62b9605cc1e9a80e13d7acc2d80d9f7e 345 SUPERFAMILY SSF102114 2 331 1.44E-72 T 13-10-2018 HCD_07705 62b9605cc1e9a80e13d7acc2d80d9f7e 345 SMART SM00729 1 216 5.3E-35 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 HCD_07705 62b9605cc1e9a80e13d7acc2d80d9f7e 345 Gene3D G3DSA:3.80.30.20 1 285 6.1E-79 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe HCD_07705 62b9605cc1e9a80e13d7acc2d80d9f7e 345 Pfam PF04055 Radical SAM superfamily 5 164 1.4E-13 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 HCD_07705 62b9605cc1e9a80e13d7acc2d80d9f7e 345 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 1 345 2.0E-146 T 13-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 HCD_04060 7ea4d803c2059c1e791806627bc3b8d4 276 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 274 2.2E-128 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 HCD_04060 7ea4d803c2059c1e791806627bc3b8d4 276 Gene3D G3DSA:2.40.50.140 1 114 5.8E-40 T 13-10-2018 HCD_04060 7ea4d803c2059c1e791806627bc3b8d4 276 PIRSF PIRSF002158 4 276 7.2E-92 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04060 7ea4d803c2059c1e791806627bc3b8d4 276 ProSitePatterns PS00467 Ribosomal protein L2 signature. 219 230 - T 13-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04060 7ea4d803c2059c1e791806627bc3b8d4 276 SUPERFAMILY SSF50249 2 118 8.91E-42 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_04060 7ea4d803c2059c1e791806627bc3b8d4 276 Gene3D G3DSA:4.10.950.10 198 275 3.0E-31 T 13-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04060 7ea4d803c2059c1e791806627bc3b8d4 276 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 274 43.853 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 HCD_04060 7ea4d803c2059c1e791806627bc3b8d4 276 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 4.6E-31 T 13-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04060 7ea4d803c2059c1e791806627bc3b8d4 276 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 251 1.7E-53 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 HCD_04060 7ea4d803c2059c1e791806627bc3b8d4 276 SMART SM01383 42 118 1.1E-40 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04060 7ea4d803c2059c1e791806627bc3b8d4 276 Gene3D G3DSA:2.30.30.30 121 197 4.2E-30 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 HCD_04060 7ea4d803c2059c1e791806627bc3b8d4 276 SMART SM01382 125 253 4.0E-87 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 HCD_04060 7ea4d803c2059c1e791806627bc3b8d4 276 SUPERFAMILY SSF50104 127 272 6.02E-59 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily HCD_05475 b2a64ddad6f6ca3cad23ca63cb381c84 479 SUPERFAMILY SSF54368 10 108 1.57E-30 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 HCD_05475 b2a64ddad6f6ca3cad23ca63cb381c84 479 Gene3D G3DSA:3.30.590.10 112 461 1.5E-126 T 13-10-2018 HCD_05475 b2a64ddad6f6ca3cad23ca63cb381c84 479 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 12 477 6.7E-203 T 13-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 HCD_05475 b2a64ddad6f6ca3cad23ca63cb381c84 479 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 266 281 - T 13-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 HCD_05475 b2a64ddad6f6ca3cad23ca63cb381c84 479 Gene3D G3DSA:3.10.20.70 10 111 3.8E-33 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 HCD_05475 b2a64ddad6f6ca3cad23ca63cb381c84 479 SUPERFAMILY SSF55931 110 478 3.43E-120 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 HCD_05475 b2a64ddad6f6ca3cad23ca63cb381c84 479 SMART SM01230 109 386 1.3E-131 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 HCD_05475 b2a64ddad6f6ca3cad23ca63cb381c84 479 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 21 101 4.9E-27 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 HCD_05475 b2a64ddad6f6ca3cad23ca63cb381c84 479 Pfam PF00120 Glutamine synthetase, catalytic domain 110 473 1.8E-124 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 HCD_01895 1f926129d3800c01dafcfcd68f8fed82 465 SMART SM00840 343 407 0.0075 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 HCD_01895 1f926129d3800c01dafcfcd68f8fed82 465 SUPERFAMILY SSF52374 3 313 1.13E-81 T 13-10-2018 HCD_01895 1f926129d3800c01dafcfcd68f8fed82 465 Gene3D G3DSA:1.20.120.640 309 463 2.2E-29 T 13-10-2018 HCD_01895 1f926129d3800c01dafcfcd68f8fed82 465 SUPERFAMILY SSF47323 319 463 6.67E-27 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_01895 1f926129d3800c01dafcfcd68f8fed82 465 Pfam PF09190 DALR domain 346 403 2.8E-6 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 HCD_01895 1f926129d3800c01dafcfcd68f8fed82 465 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 1 464 34.042 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 HCD_01895 1f926129d3800c01dafcfcd68f8fed82 465 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 1 463 2.0E-169 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 HCD_01895 1f926129d3800c01dafcfcd68f8fed82 465 Gene3D G3DSA:3.40.50.620 1 308 6.1E-110 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_01895 1f926129d3800c01dafcfcd68f8fed82 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 60 69 1.7E-25 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 HCD_01895 1f926129d3800c01dafcfcd68f8fed82 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 225 246 1.7E-25 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 HCD_01895 1f926129d3800c01dafcfcd68f8fed82 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 189 207 1.7E-25 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 HCD_01895 1f926129d3800c01dafcfcd68f8fed82 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 24 35 1.7E-25 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 HCD_01895 1f926129d3800c01dafcfcd68f8fed82 465 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 14 316 3.7E-126 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 HCD_07435 b0fd482475699e3baa205ccc461a39d2 237 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 70 195 3.7E-40 T 13-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB HCD_07435 b0fd482475699e3baa205ccc461a39d2 237 Gene3D G3DSA:1.10.1130.10 111 182 4.3E-26 T 13-10-2018 HCD_07435 b0fd482475699e3baa205ccc461a39d2 237 SUPERFAMILY SSF48695 90 200 4.36E-34 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily HCD_05365 64933e83f9d810e6c3a88b0bb8c9abf2 313 Gene3D G3DSA:2.30.30.40 21 161 6.9E-17 T 13-10-2018 HCD_05365 64933e83f9d810e6c3a88b0bb8c9abf2 313 SUPERFAMILY SSF52172 191 312 1.15E-21 T 13-10-2018 IPR011006 CheY-like superfamily HCD_05365 64933e83f9d810e6c3a88b0bb8c9abf2 313 PIRSF PIRSF002867 1 313 8.4E-97 T 13-10-2018 IPR024181 Chemotaxis response regulator CheV HCD_05365 64933e83f9d810e6c3a88b0bb8c9abf2 313 Gene3D G3DSA:3.40.50.2300 183 313 2.3E-24 T 13-10-2018 HCD_05365 64933e83f9d810e6c3a88b0bb8c9abf2 313 Gene3D G3DSA:2.40.50.180 39 167 6.9E-17 T 13-10-2018 HCD_05365 64933e83f9d810e6c3a88b0bb8c9abf2 313 Pfam PF01584 CheW-like domain 18 170 1.6E-29 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 HCD_05365 64933e83f9d810e6c3a88b0bb8c9abf2 313 SMART SM00260 14 167 1.4E-28 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 HCD_05365 64933e83f9d810e6c3a88b0bb8c9abf2 313 SUPERFAMILY SSF50341 15 172 3.66E-21 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 HCD_05365 64933e83f9d810e6c3a88b0bb8c9abf2 313 SMART SM00448 192 311 3.1E-18 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_05365 64933e83f9d810e6c3a88b0bb8c9abf2 313 Pfam PF00072 Response regulator receiver domain 194 308 1.1E-16 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_02595 4d02a6a66b5c53b110d118486368237e 516 Gene3D G3DSA:3.40.50.300 268 516 1.5E-56 T 13-10-2018 HCD_02595 4d02a6a66b5c53b110d118486368237e 516 SUPERFAMILY SSF52540 1 243 1.61E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02595 4d02a6a66b5c53b110d118486368237e 516 SMART SM00382 26 223 1.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_02595 4d02a6a66b5c53b110d118486368237e 516 SMART SM00382 297 488 5.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_02595 4d02a6a66b5c53b110d118486368237e 516 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_02595 4d02a6a66b5c53b110d118486368237e 516 Pfam PF00005 ABC transporter 291 440 2.3E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_02595 4d02a6a66b5c53b110d118486368237e 516 Gene3D G3DSA:3.40.50.300 1 267 3.8E-75 T 13-10-2018 HCD_02595 4d02a6a66b5c53b110d118486368237e 516 SUPERFAMILY SSF52540 273 511 9.11E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02595 4d02a6a66b5c53b110d118486368237e 516 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_02595 4d02a6a66b5c53b110d118486368237e 516 Pfam PF00005 ABC transporter 17 173 2.0E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_02595 4d02a6a66b5c53b110d118486368237e 516 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 225 250 0.011 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 HCD_02595 4d02a6a66b5c53b110d118486368237e 516 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 491 514 5.0E-4 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 HCD_07375 360148f0747a35c23150381ab3251a17 290 Gene3D G3DSA:1.10.10.2830 111 223 6.6E-34 T 13-10-2018 HCD_07375 360148f0747a35c23150381ab3251a17 290 SUPERFAMILY SSF110849 34 125 5.23E-28 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily HCD_07375 360148f0747a35c23150381ab3251a17 290 Gene3D G3DSA:3.90.1530.30 47 109 1.1E-24 T 13-10-2018 HCD_07375 360148f0747a35c23150381ab3251a17 290 Pfam PF02195 ParB-like nuclease domain 35 123 5.7E-26 T 13-10-2018 IPR003115 ParB/Sulfiredoxin HCD_07375 360148f0747a35c23150381ab3251a17 290 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 31 207 6.2E-64 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 HCD_07375 360148f0747a35c23150381ab3251a17 290 SUPERFAMILY SSF109709 116 223 3.66E-32 T 13-10-2018 HCD_07375 360148f0747a35c23150381ab3251a17 290 SMART SM00470 34 123 7.0E-38 T 13-10-2018 IPR003115 ParB/Sulfiredoxin HCD_08630 ffb203d67b6e1938d6b948d5329201c7 317 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 3 306 1.3E-87 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08630 ffb203d67b6e1938d6b948d5329201c7 317 Pfam PF00145 C-5 cytosine-specific DNA methylase 1 308 4.9E-86 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08630 ffb203d67b6e1938d6b948d5329201c7 317 Gene3D G3DSA:3.40.50.150 2 298 6.8E-90 T 13-10-2018 HCD_08630 ffb203d67b6e1938d6b948d5329201c7 317 SUPERFAMILY SSF53335 1 309 1.26E-84 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_08630 ffb203d67b6e1938d6b948d5329201c7 317 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 147 160 1.4E-16 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08630 ffb203d67b6e1938d6b948d5329201c7 317 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 101 115 1.4E-16 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08630 ffb203d67b6e1938d6b948d5329201c7 317 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 2 18 1.4E-16 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08630 ffb203d67b6e1938d6b948d5329201c7 317 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 288 306 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 HCD_08630 ffb203d67b6e1938d6b948d5329201c7 317 Gene3D G3DSA:3.90.120.10 177 272 6.8E-90 T 13-10-2018 HCD_08630 ffb203d67b6e1938d6b948d5329201c7 317 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 62 74 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR01159 DNA gyrase subunit B signature 196 209 7.6E-52 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR01159 DNA gyrase subunit B signature 310 326 7.6E-52 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR01159 DNA gyrase subunit B signature 742 758 7.6E-52 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR01159 DNA gyrase subunit B signature 4 14 7.6E-52 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR01159 DNA gyrase subunit B signature 181 196 7.6E-52 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR01159 DNA gyrase subunit B signature 242 260 7.6E-52 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR01159 DNA gyrase subunit B signature 372 392 7.6E-52 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR01159 DNA gyrase subunit B signature 468 477 7.6E-52 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR01159 DNA gyrase subunit B signature 726 738 7.6E-52 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR01159 DNA gyrase subunit B signature 358 372 7.6E-52 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 SUPERFAMILY SSF54211 221 389 3.98E-46 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR00418 DNA topoisomerase II family signature 484 500 4.9E-71 T 13-10-2018 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR00418 DNA topoisomerase II family signature 68 81 4.9E-71 T 13-10-2018 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR00418 DNA topoisomerase II family signature 268 281 4.9E-71 T 13-10-2018 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR00418 DNA topoisomerase II family signature 33 48 4.9E-71 T 13-10-2018 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR00418 DNA topoisomerase II family signature 522 534 4.9E-71 T 13-10-2018 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR00418 DNA topoisomerase II family signature 111 125 4.9E-71 T 13-10-2018 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR00418 DNA topoisomerase II family signature 705 721 4.9E-71 T 13-10-2018 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR00418 DNA topoisomerase II family signature 418 432 4.9E-71 T 13-10-2018 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 PRINTS PR00418 DNA topoisomerase II family signature 502 519 4.9E-71 T 13-10-2018 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 SUPERFAMILY SSF56719 392 768 5.49E-82 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 Pfam PF01751 Toprim domain 417 528 4.7E-20 T 13-10-2018 IPR006171 TOPRIM domain HCD_01525 ee296305051ae4b3401ee800ba84df53 773 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 701 762 2.2E-26 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 SUPERFAMILY SSF55874 4 218 9.43E-68 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily HCD_01525 ee296305051ae4b3401ee800ba84df53 773 Gene3D G3DSA:3.30.230.10 221 397 4.2E-59 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup HCD_01525 ee296305051ae4b3401ee800ba84df53 773 Gene3D G3DSA:3.30.565.10 1 220 4.5E-85 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily HCD_01525 ee296305051ae4b3401ee800ba84df53 773 Pfam PF00204 DNA gyrase B 221 388 1.4E-51 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 174 3.7E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase HCD_01525 ee296305051ae4b3401ee800ba84df53 773 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 1 773 105.291 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 SMART SM00433 33 766 1.4E-252 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 4 773 4.6E-292 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 ProSitePatterns PS00177 DNA topoisomerase II signature. 420 428 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 HCD_01525 ee296305051ae4b3401ee800ba84df53 773 SMART SM00387 29 176 3.1E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase HCD_05400 775b9e6e660f2b11e1f2dfdb5fff364a 219 Pfam PF13247 4Fe-4S dicluster domain 69 180 1.5E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_05400 775b9e6e660f2b11e1f2dfdb5fff364a 219 Gene3D G3DSA:3.30.70.20 77 134 2.2E-35 T 13-10-2018 HCD_05400 775b9e6e660f2b11e1f2dfdb5fff364a 219 PRINTS PR00354 7Fe ferredoxin signature 71 81 5.9E-5 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 HCD_05400 775b9e6e660f2b11e1f2dfdb5fff364a 219 PRINTS PR00354 7Fe ferredoxin signature 98 115 5.9E-5 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 HCD_05400 775b9e6e660f2b11e1f2dfdb5fff364a 219 PRINTS PR00354 7Fe ferredoxin signature 81 91 5.9E-5 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 HCD_05400 775b9e6e660f2b11e1f2dfdb5fff364a 219 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 103 114 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_05400 775b9e6e660f2b11e1f2dfdb5fff364a 219 Gene3D G3DSA:3.30.70.20 21 195 2.2E-35 T 13-10-2018 HCD_05400 775b9e6e660f2b11e1f2dfdb5fff364a 219 SUPERFAMILY SSF54862 18 196 3.66E-49 T 13-10-2018 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 PRINTS PR01038 Arginyl-tRNA synthetase signature 111 126 2.4E-23 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 PRINTS PR01038 Arginyl-tRNA synthetase signature 150 163 2.4E-23 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 PRINTS PR01038 Arginyl-tRNA synthetase signature 292 313 2.4E-23 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 PRINTS PR01038 Arginyl-tRNA synthetase signature 126 142 2.4E-23 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 SMART SM00836 423 537 9.8E-27 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 Gene3D G3DSA:1.10.730.10 418 536 1.3E-153 T 13-10-2018 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 SUPERFAMILY SSF47323 417 535 6.98E-25 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 5 536 6.5E-164 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 Pfam PF05746 DALR anticodon binding domain 424 535 1.2E-23 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 121 130 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 SMART SM01016 3 81 2.2E-22 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 Gene3D G3DSA:3.40.50.620 111 417 1.3E-153 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 SUPERFAMILY SSF52374 106 433 2.82E-84 T 13-10-2018 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 SUPERFAMILY SSF55190 5 93 6.15E-18 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 Pfam PF00750 tRNA synthetases class I (R) 97 394 6.0E-18 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 Gene3D G3DSA:3.30.1360.70 1 105 5.9E-23 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 537 25.55 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 HCD_02195 1f0c86e2b99a821b13e67b7bfbd884ac 541 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 3 81 5.4E-17 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 HCD_01120 f3c52eca72f1e51398b29ad870b3877a 138 Pfam PF06518 Protein of unknown function (DUF1104) 21 112 3.3E-29 T 13-10-2018 IPR009488 Protein of unknown function DUF1104 HCD_01120 f3c52eca72f1e51398b29ad870b3877a 138 Gene3D G3DSA:1.20.120.1430 14 110 8.2E-25 T 13-10-2018 HCD_05920 c0bb59a5ecf6ea786ebf7aeea408e2f3 264 Pfam PF01975 Survival protein SurE 4 193 3.8E-59 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 HCD_05920 c0bb59a5ecf6ea786ebf7aeea408e2f3 264 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 2 264 38.053 T 13-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 HCD_05920 c0bb59a5ecf6ea786ebf7aeea408e2f3 264 Gene3D G3DSA:3.40.1210.10 1 264 3.1E-84 T 13-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 HCD_05920 c0bb59a5ecf6ea786ebf7aeea408e2f3 264 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 3 247 3.5E-89 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 HCD_05920 c0bb59a5ecf6ea786ebf7aeea408e2f3 264 SUPERFAMILY SSF64167 3 261 2.62E-77 T 13-10-2018 HCD_06340 6611a944ebd613180b07090df6f0d2eb 632 Pfam PF01434 Peptidase family M41 402 610 9.3E-76 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 HCD_06340 6611a944ebd613180b07090df6f0d2eb 632 SUPERFAMILY SSF52540 165 436 1.91E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_06340 6611a944ebd613180b07090df6f0d2eb 632 ProSitePatterns PS00674 AAA-protein family signature. 311 329 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 HCD_06340 6611a944ebd613180b07090df6f0d2eb 632 SMART SM00382 202 343 1.8E-24 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_06340 6611a944ebd613180b07090df6f0d2eb 632 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 9 623 34.696 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 HCD_06340 6611a944ebd613180b07090df6f0d2eb 632 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 206 339 3.2E-43 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 HCD_06340 6611a944ebd613180b07090df6f0d2eb 632 SUPERFAMILY SSF140990 423 616 4.32E-61 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 HCD_06340 6611a944ebd613180b07090df6f0d2eb 632 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 119 611 2.3E-224 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 HCD_06340 6611a944ebd613180b07090df6f0d2eb 632 Gene3D G3DSA:1.20.58.760 423 623 5.3E-66 T 13-10-2018 HCD_06340 6611a944ebd613180b07090df6f0d2eb 632 Gene3D G3DSA:3.40.50.300 160 340 2.1E-68 T 13-10-2018 HCD_06340 6611a944ebd613180b07090df6f0d2eb 632 Gene3D G3DSA:1.10.8.60 342 419 1.8E-27 T 13-10-2018 HCD_00470 a5b011c90bebc9827d45c7e4a68321eb 492 Pfam PF00361 Proton-conducting membrane transporter 130 427 3.4E-55 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00470 a5b011c90bebc9827d45c7e4a68321eb 492 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 13 487 15.14 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 HCD_00470 a5b011c90bebc9827d45c7e4a68321eb 492 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 16 483 1.0E-143 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 130 143 1.9E-38 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 222 238 1.9E-38 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 299 325 1.9E-38 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 154 182 1.9E-38 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 204 221 1.9E-38 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 PIRSF PIRSF000110 1 354 2.1E-121 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 PIRSF PIRSF000110 326 425 1.8E-13 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 Gene3D G3DSA:3.30.360.10 164 411 8.7E-118 T 13-10-2018 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 7 174 3.0E-49 T 13-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 SUPERFAMILY SSF51735 4 177 1.97E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_08450 35a3b48485c7d1ee097f449350e23914 425 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 352 411 4.0E-6 T 13-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 177 347 1.4E-54 T 13-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 Gene3D G3DSA:3.40.50.720 6 380 8.7E-118 T 13-10-2018 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 SUPERFAMILY SSF55347 164 416 3.92E-68 T 13-10-2018 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 3 425 66.489 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 HCD_08450 35a3b48485c7d1ee097f449350e23914 425 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 164 170 - T 13-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 HCD_01100 d08e956235b429cd14e174844ea65b5a 569 Gene3D G3DSA:3.40.50.300 11 175 7.4E-95 T 13-10-2018 HCD_01100 d08e956235b429cd14e174844ea65b5a 569 SUPERFAMILY SSF52540 32 224 4.67E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01100 d08e956235b429cd14e174844ea65b5a 569 Gene3D G3DSA:1.10.8.60 7 238 7.4E-95 T 13-10-2018 HCD_01100 d08e956235b429cd14e174844ea65b5a 569 Pfam PF13177 DNA polymerase III, delta subunit 18 176 6.8E-42 T 13-10-2018 HCD_01100 d08e956235b429cd14e174844ea65b5a 569 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 2 295 3.8E-116 T 13-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 HCD_01100 d08e956235b429cd14e174844ea65b5a 569 SMART SM00382 35 177 3.4E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_00400 3432dd177ffd5ff684068e01e7f99fbf 159 Pfam PF06271 RDD family 34 146 2.8E-12 T 13-10-2018 IPR010432 RDD HCD_08180 7071b0fec5f90abe6d456f182e2d8417 146 SUPERFAMILY SSF75420 3 81 2.09E-19 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily HCD_08180 7071b0fec5f90abe6d456f182e2d8417 146 Pfam PF02576 RimP N-terminal domain 9 81 1.4E-23 T 13-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal HCD_08180 7071b0fec5f90abe6d456f182e2d8417 146 Pfam PF17384 RimP C-terminal SH3 domain 84 146 3.6E-12 T 13-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal HCD_08180 7071b0fec5f90abe6d456f182e2d8417 146 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 3 146 18.933 T 13-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 HCD_08180 7071b0fec5f90abe6d456f182e2d8417 146 SUPERFAMILY SSF74942 82 146 2.09E-5 T 13-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily HCD_08180 7071b0fec5f90abe6d456f182e2d8417 146 Gene3D G3DSA:3.30.300.70 1 77 7.8E-19 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily HCD_07190 c0fca54a051e8b903a8fe70c1352f7be 87 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 13-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_07190 c0fca54a051e8b903a8fe70c1352f7be 87 Gene3D G3DSA:2.40.50.100 20 83 2.3E-31 T 13-10-2018 HCD_07190 c0fca54a051e8b903a8fe70c1352f7be 87 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 29 69 2.0E-16 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07190 c0fca54a051e8b903a8fe70c1352f7be 87 Pfam PF01016 Ribosomal L27 protein 2 81 4.0E-39 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07190 c0fca54a051e8b903a8fe70c1352f7be 87 SUPERFAMILY SSF110324 2 82 8.37E-35 T 13-10-2018 HCD_07190 c0fca54a051e8b903a8fe70c1352f7be 87 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 5.7E-42 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07190 c0fca54a051e8b903a8fe70c1352f7be 87 PRINTS PR00063 Ribosomal protein L27 signature 54 78 8.9E-40 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07190 c0fca54a051e8b903a8fe70c1352f7be 87 PRINTS PR00063 Ribosomal protein L27 signature 29 53 8.9E-40 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07190 c0fca54a051e8b903a8fe70c1352f7be 87 PRINTS PR00063 Ribosomal protein L27 signature 4 28 8.9E-40 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07190 c0fca54a051e8b903a8fe70c1352f7be 87 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 28.441 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03565 45fb7d6bf0b7ad6438ccd1e372ca1927 90 SUPERFAMILY SSF46992 3 86 3.79E-27 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03565 45fb7d6bf0b7ad6438ccd1e372ca1927 90 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 87 2.9E-32 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03565 45fb7d6bf0b7ad6438ccd1e372ca1927 90 Gene3D G3DSA:1.20.58.110 1 87 7.5E-25 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03565 45fb7d6bf0b7ad6438ccd1e372ca1927 90 Pfam PF01649 Ribosomal protein S20 2 84 6.7E-25 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03565 45fb7d6bf0b7ad6438ccd1e372ca1927 90 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 87 1.0E-27 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03565 45fb7d6bf0b7ad6438ccd1e372ca1927 90 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 16.479 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_02215 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_02215 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_02215 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_02215 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_02410 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_02410 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_02410 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_02410 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_02820 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_02820 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_02820 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_02820 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_05155 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_05155 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_05155 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_05155 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_01955 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_01955 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_01955 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_01955 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_07940 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_07940 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_07940 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_07940 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_05185 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_05185 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_05185 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_05185 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_08729 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_08729 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_08729 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_08729 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_07460 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_07460 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_07460 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_07460 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_07790 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_07790 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_07790 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_07790 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_07770 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_07770 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_07770 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_07770 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_01015 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_01015 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_01015 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_01015 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_08764 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_08764 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_08764 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_08764 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_06180 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_06180 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_06180 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_06180 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_02975 347e658482acf88d6868badb33e216b6 430 Pfam PF12323 Helix-turn-helix domain 1 37 7.6E-8 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_02975 347e658482acf88d6868badb33e216b6 430 Pfam PF07282 Putative transposase DNA-binding domain 340 408 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_02975 347e658482acf88d6868badb33e216b6 430 Pfam PF01385 Probable transposase 237 318 4.2E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_02975 347e658482acf88d6868badb33e216b6 430 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 288 367 2.8E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_01785 e17827240722bc456bbfc5b309177ce1 222 Gene3D G3DSA:3.30.420.40 74 220 1.0E-43 T 13-10-2018 HCD_01785 e17827240722bc456bbfc5b309177ce1 222 Pfam PF03309 Type III pantothenate kinase 48 180 2.8E-16 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 HCD_01785 e17827240722bc456bbfc5b309177ce1 222 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 17 216 8.7E-48 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 HCD_01785 e17827240722bc456bbfc5b309177ce1 222 Gene3D G3DSA:3.30.420.40 13 68 6.2E-9 T 13-10-2018 HCD_01785 e17827240722bc456bbfc5b309177ce1 222 Hamap MF_01274 Type III pantothenate kinase [coaX]. 14 220 16.242 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 HCD_01785 e17827240722bc456bbfc5b309177ce1 222 SUPERFAMILY SSF53067 100 217 3.24E-26 T 13-10-2018 HCD_01785 e17827240722bc456bbfc5b309177ce1 222 SUPERFAMILY SSF53067 15 96 3.5E-24 T 13-10-2018 HCD_04775 ab5ea7622948a86197770ceac7f7a230 422 PIRSF PIRSF000106 47 422 7.7E-72 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 HCD_04775 ab5ea7622948a86197770ceac7f7a230 422 Gene3D G3DSA:3.40.50.720 160 422 2.8E-83 T 13-10-2018 HCD_04775 ab5ea7622948a86197770ceac7f7a230 422 Pfam PF03949 Malic enzyme, NAD binding domain 164 354 3.3E-23 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 HCD_04775 ab5ea7622948a86197770ceac7f7a230 422 SUPERFAMILY SSF53223 11 160 7.91E-50 T 13-10-2018 HCD_04775 ab5ea7622948a86197770ceac7f7a230 422 SMART SM01274 17 150 4.5E-73 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 HCD_04775 ab5ea7622948a86197770ceac7f7a230 422 SMART SM00919 162 396 4.2E-137 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 HCD_04775 ab5ea7622948a86197770ceac7f7a230 422 SUPERFAMILY SSF51735 162 417 3.8E-82 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_04775 ab5ea7622948a86197770ceac7f7a230 422 Pfam PF00390 Malic enzyme, N-terminal domain 20 150 7.7E-26 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 HCD_04775 ab5ea7622948a86197770ceac7f7a230 422 Gene3D G3DSA:3.40.50.10380 1 159 3.0E-66 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 HCD_06140 231f1e93d0bd8ec2be87a82a250f99fb 451 Gene3D G3DSA:1.20.120.1380 195 431 3.1E-62 T 13-10-2018 HCD_06140 231f1e93d0bd8ec2be87a82a250f99fb 451 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 2 337 5.8E-66 T 13-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 HCD_06140 231f1e93d0bd8ec2be87a82a250f99fb 451 Pfam PF00448 SRP54-type protein, GTPase domain 249 440 1.5E-49 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 HCD_06140 231f1e93d0bd8ec2be87a82a250f99fb 451 SUPERFAMILY SSF52540 243 441 1.32E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_06140 231f1e93d0bd8ec2be87a82a250f99fb 451 SMART SM00382 247 404 2.0E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_06140 231f1e93d0bd8ec2be87a82a250f99fb 451 SMART SM00962 248 441 3.5E-60 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 HCD_06140 231f1e93d0bd8ec2be87a82a250f99fb 451 Gene3D G3DSA:3.40.50.300 243 429 3.1E-62 T 13-10-2018 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 51 606 5.6E-234 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 Gene3D G3DSA:3.40.50.800 507 611 1.6E-27 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 Gene3D G3DSA:3.30.930.10 198 506 1.8E-125 T 13-10-2018 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 Pfam PF03129 Anticodon binding domain 516 605 1.5E-20 T 13-10-2018 IPR004154 Anticodon-binding HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 147 194 1.9E-12 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 298 503 5.0E-39 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 SUPERFAMILY SSF52954 502 608 3.32E-26 T 13-10-2018 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 PRINTS PR01047 Threonyl-tRNA synthetase signature 439 467 2.0E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 PRINTS PR01047 Threonyl-tRNA synthetase signature 509 521 2.0E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 PRINTS PR01047 Threonyl-tRNA synthetase signature 338 361 2.0E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 PRINTS PR01047 Threonyl-tRNA synthetase signature 482 495 2.0E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 PRINTS PR01047 Threonyl-tRNA synthetase signature 305 333 2.0E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 SMART SM00863 145 194 5.6E-18 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 Gene3D G3DSA:3.30.980.10 48 197 1.6E-53 T 13-10-2018 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 SUPERFAMILY SSF55186 44 216 1.83E-54 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 Gene3D G3DSA:3.30.54.20 109 162 1.6E-53 T 13-10-2018 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 45 609 33.1 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 HCD_03385 f8b480a29bc6bed8621fd12c07dcb2de 612 SUPERFAMILY SSF55681 218 500 2.87E-91 T 13-10-2018 HCD_03670 2c7adc3966b2a2d51c09fe1b3fcd13e2 198 Pfam PF01569 PAP2 superfamily 89 170 3.0E-12 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase HCD_03670 2c7adc3966b2a2d51c09fe1b3fcd13e2 198 Gene3D G3DSA:1.20.144.10 90 183 1.8E-12 T 13-10-2018 HCD_03670 2c7adc3966b2a2d51c09fe1b3fcd13e2 198 SMART SM00014 62 166 0.0038 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase HCD_03670 2c7adc3966b2a2d51c09fe1b3fcd13e2 198 SUPERFAMILY SSF48317 20 175 9.94E-16 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily HCD_06155 31de54c10248bae491d99c17e1290c8e 167 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 167 60.596 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 HCD_06155 31de54c10248bae491d99c17e1290c8e 167 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 2 144 1.1E-64 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 HCD_06155 31de54c10248bae491d99c17e1290c8e 167 SUPERFAMILY SSF52304 1 155 4.06E-59 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 HCD_06155 31de54c10248bae491d99c17e1290c8e 167 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 3 154 2.0E-84 T 13-10-2018 HCD_06155 31de54c10248bae491d99c17e1290c8e 167 ProSitePatterns PS01029 Dehydroquinase class II signature. 6 23 - T 13-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 HCD_06155 31de54c10248bae491d99c17e1290c8e 167 PIRSF PIRSF001399 1 148 1.3E-64 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 HCD_06155 31de54c10248bae491d99c17e1290c8e 167 Pfam PF01220 Dehydroquinase class II 2 141 5.0E-53 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 HCD_06155 31de54c10248bae491d99c17e1290c8e 167 Gene3D G3DSA:3.40.50.9100 1 150 5.9E-63 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 HCD_03460 a69ae50b58fc2f098bc094fbdab7be38 308 Gene3D G3DSA:3.20.20.70 27 263 1.6E-23 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_03460 a69ae50b58fc2f098bc094fbdab7be38 308 Pfam PF13394 4Fe-4S single cluster domain 32 128 4.3E-6 T 13-10-2018 HCD_03460 a69ae50b58fc2f098bc094fbdab7be38 308 Pfam PF04055 Radical SAM superfamily 31 186 1.3E-11 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 HCD_03460 a69ae50b58fc2f098bc094fbdab7be38 308 SUPERFAMILY SSF102114 32 236 4.45E-22 T 13-10-2018 HCD_03085 d906eed1f0e3aef6c285f82971d26d10 427 Pfam PF01136 Peptidase family U32 78 309 3.5E-76 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 HCD_03085 d906eed1f0e3aef6c285f82971d26d10 427 ProSitePatterns PS01276 Peptidase family U32 signature. 164 182 - T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 HCD_00075 9b25de970ed7b66e88467a9abb923fb8 377 Gene3D G3DSA:2.40.128.260 167 311 1.7E-47 T 13-10-2018 HCD_00075 9b25de970ed7b66e88467a9abb923fb8 377 Gene3D G3DSA:1.10.1200.160 312 342 3.4E-21 T 13-10-2018 HCD_00075 9b25de970ed7b66e88467a9abb923fb8 377 Pfam PF03743 Bacterial conjugation TrbI-like protein 172 363 1.6E-43 T 13-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI HCD_03100 5fa361f51d8a8aed28519014ee4afd1b 225 SUPERFAMILY SSF52172 2 126 3.98E-37 T 13-10-2018 IPR011006 CheY-like superfamily HCD_03100 5fa361f51d8a8aed28519014ee4afd1b 225 Gene3D G3DSA:3.40.50.2300 1 117 4.3E-34 T 13-10-2018 HCD_03100 5fa361f51d8a8aed28519014ee4afd1b 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 223 3.4E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 HCD_03100 5fa361f51d8a8aed28519014ee4afd1b 225 SUPERFAMILY SSF46894 133 224 1.5E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 HCD_03100 5fa361f51d8a8aed28519014ee4afd1b 225 Pfam PF00072 Response regulator receiver domain 4 113 1.2E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_03100 5fa361f51d8a8aed28519014ee4afd1b 225 SMART SM00862 147 223 1.3E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 HCD_03100 5fa361f51d8a8aed28519014ee4afd1b 225 Gene3D G3DSA:1.10.10.10 118 225 6.4E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_03100 5fa361f51d8a8aed28519014ee4afd1b 225 SMART SM00448 2 112 1.5E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_02790 0f9ac8f461a65f70990d193d4989d3d2 403 Gene3D G3DSA:3.40.250.10 258 393 6.6E-29 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily HCD_02790 0f9ac8f461a65f70990d193d4989d3d2 403 SUPERFAMILY SSF52821 268 383 1.23E-23 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily HCD_02790 0f9ac8f461a65f70990d193d4989d3d2 403 Pfam PF00581 Rhodanese-like domain 151 232 6.0E-9 T 13-10-2018 IPR001763 Rhodanese-like domain HCD_02790 0f9ac8f461a65f70990d193d4989d3d2 403 Pfam PF00581 Rhodanese-like domain 268 382 2.3E-12 T 13-10-2018 IPR001763 Rhodanese-like domain HCD_02790 0f9ac8f461a65f70990d193d4989d3d2 403 SUPERFAMILY SSF52821 118 247 1.96E-21 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily HCD_02790 0f9ac8f461a65f70990d193d4989d3d2 403 Gene3D G3DSA:3.40.250.10 118 246 3.4E-24 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily HCD_02790 0f9ac8f461a65f70990d193d4989d3d2 403 SMART SM00450 124 236 1.0E-9 T 13-10-2018 IPR001763 Rhodanese-like domain HCD_02790 0f9ac8f461a65f70990d193d4989d3d2 403 SMART SM00450 259 386 5.5E-8 T 13-10-2018 IPR001763 Rhodanese-like domain HCD_02790 0f9ac8f461a65f70990d193d4989d3d2 403 Gene3D G3DSA:3.40.250.10 6 116 3.3E-9 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 606 632 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 Pfam PF04539 Sigma-70 region 3 492 566 5.8E-23 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 PRINTS PR00046 Major sigma-70 factor signature 584 596 2.0E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 PRINTS PR00046 Major sigma-70 factor signature 606 621 2.0E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 PRINTS PR00046 Major sigma-70 factor signature 621 632 2.0E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 PRINTS PR00046 Major sigma-70 factor signature 436 449 2.0E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 PRINTS PR00046 Major sigma-70 factor signature 460 468 2.0E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 Gene3D G3DSA:1.10.10.10 563 646 3.3E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 Pfam PF04545 Sigma-70, region 4 580 633 1.2E-19 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 Pfam PF04542 Sigma-70 region 2 414 481 1.4E-20 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 Gene3D G3DSA:1.10.10.10 485 561 3.8E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 9 646 40.784 T 13-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 SUPERFAMILY SSF88659 543 644 5.98E-26 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 408 645 5.1E-112 T 13-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 408 634 6.7E-39 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 SUPERFAMILY SSF88946 151 479 8.79E-62 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 SUPERFAMILY SSF88659 485 558 6.98E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 436 449 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 HCD_03515 979e5dc5bc2abfedddcb35571a7d5f87 647 Pfam PF00140 Sigma-70 factor, region 1.2 135 166 8.3E-12 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 HCD_03020 9839469e1e1e91325a7004445f2de0c7 501 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 3 491 1.5E-215 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 HCD_03020 9839469e1e1e91325a7004445f2de0c7 501 Gene3D G3DSA:2.40.50.140 1 146 2.5E-40 T 13-10-2018 HCD_03020 9839469e1e1e91325a7004445f2de0c7 501 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 9 492 42.151 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 HCD_03020 9839469e1e1e91325a7004445f2de0c7 501 Gene3D G3DSA:3.30.930.10 147 501 3.0E-126 T 13-10-2018 HCD_03020 9839469e1e1e91325a7004445f2de0c7 501 Pfam PF01336 OB-fold nucleic acid binding domain 59 135 5.5E-14 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 HCD_03020 9839469e1e1e91325a7004445f2de0c7 501 Pfam PF00152 tRNA synthetases class II (D, K and N) 152 488 5.8E-79 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_03020 9839469e1e1e91325a7004445f2de0c7 501 SUPERFAMILY SSF50249 4 144 1.39E-33 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_03020 9839469e1e1e91325a7004445f2de0c7 501 SUPERFAMILY SSF55681 151 489 1.23E-115 T 13-10-2018 HCD_03020 9839469e1e1e91325a7004445f2de0c7 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 204 220 3.7E-38 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 HCD_03020 9839469e1e1e91325a7004445f2de0c7 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 251 268 3.7E-38 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 HCD_03020 9839469e1e1e91325a7004445f2de0c7 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 188 198 3.7E-38 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 HCD_03020 9839469e1e1e91325a7004445f2de0c7 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 233 246 3.7E-38 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 HCD_03020 9839469e1e1e91325a7004445f2de0c7 501 PRINTS PR00982 Lysyl-tRNA synthetase signature 373 389 3.7E-38 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 HCD_02080 36311753da1255317a91b8ca3bbe12dd 567 Gene3D G3DSA:3.30.300.30 124 222 6.4E-14 T 13-10-2018 HCD_02080 36311753da1255317a91b8ca3bbe12dd 567 Pfam PF01514 Secretory protein of YscJ/FliF family 30 222 1.2E-62 T 13-10-2018 IPR006182 Secretory protein YscJ/FliF HCD_02080 36311753da1255317a91b8ca3bbe12dd 567 Pfam PF08345 Flagellar M-ring protein C-terminal 257 423 1.1E-44 T 13-10-2018 IPR013556 Flagellar M-ring C-terminal HCD_02080 36311753da1255317a91b8ca3bbe12dd 567 PIRSF PIRSF004862 2 561 1.9E-132 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 HCD_02080 36311753da1255317a91b8ca3bbe12dd 567 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 2 563 1.2E-219 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 HCD_02080 36311753da1255317a91b8ca3bbe12dd 567 PRINTS PR01009 Flagellar M-ring protein signature 199 217 3.6E-34 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 HCD_02080 36311753da1255317a91b8ca3bbe12dd 567 PRINTS PR01009 Flagellar M-ring protein signature 124 142 3.6E-34 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 HCD_02080 36311753da1255317a91b8ca3bbe12dd 567 PRINTS PR01009 Flagellar M-ring protein signature 271 289 3.6E-34 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 HCD_02080 36311753da1255317a91b8ca3bbe12dd 567 PRINTS PR01009 Flagellar M-ring protein signature 156 170 3.6E-34 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 HCD_02080 36311753da1255317a91b8ca3bbe12dd 567 PRINTS PR01009 Flagellar M-ring protein signature 344 368 3.6E-34 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 HCD_03640 fbe9f4c062e7e9efe952ca8f141ade50 824 Gene3D G3DSA:3.40.50.150 10 376 1.5E-60 T 13-10-2018 HCD_03640 fbe9f4c062e7e9efe952ca8f141ade50 824 Gene3D G3DSA:3.90.120.10 175 374 1.5E-60 T 13-10-2018 HCD_03640 fbe9f4c062e7e9efe952ca8f141ade50 824 Pfam PF07669 Eco57I restriction-modification methylase 538 632 9.4E-7 T 13-10-2018 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 HCD_03640 fbe9f4c062e7e9efe952ca8f141ade50 824 Pfam PF00145 C-5 cytosine-specific DNA methylase 8 337 3.5E-36 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_03640 fbe9f4c062e7e9efe952ca8f141ade50 824 SUPERFAMILY SSF53335 7 388 3.89E-62 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_03640 fbe9f4c062e7e9efe952ca8f141ade50 824 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 542 548 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_03640 fbe9f4c062e7e9efe952ca8f141ade50 824 Gene3D G3DSA:3.40.50.150 448 639 3.0E-26 T 13-10-2018 HCD_03640 fbe9f4c062e7e9efe952ca8f141ade50 824 SUPERFAMILY SSF53335 383 674 2.57E-28 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_03640 fbe9f4c062e7e9efe952ca8f141ade50 824 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 8 24 2.1E-6 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_03640 fbe9f4c062e7e9efe952ca8f141ade50 824 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 127 141 2.1E-6 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_03640 fbe9f4c062e7e9efe952ca8f141ade50 824 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 179 192 2.1E-6 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_00500 2644963beab0493f237a780dbe595ae4 220 Pfam PF04973 Nicotinamide mononucleotide transporter 33 216 1.3E-27 T 13-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 HCD_00500 2644963beab0493f237a780dbe595ae4 220 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 32 220 1.9E-52 T 13-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 HCD_05690 18b37e62191d208a6f27d09d55d68b65 264 Gene3D G3DSA:3.40.50.300 8 230 2.6E-54 T 13-10-2018 HCD_05690 18b37e62191d208a6f27d09d55d68b65 264 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_05690 18b37e62191d208a6f27d09d55d68b65 264 Pfam PF00005 ABC transporter 20 160 1.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_05690 18b37e62191d208a6f27d09d55d68b65 264 SMART SM00382 27 211 1.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_05690 18b37e62191d208a6f27d09d55d68b65 264 SUPERFAMILY SSF52540 13 215 8.31E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02795 ddfb49b2e30eeba9bf954661cd2ac16a 345 PIRSF PIRSF000148 3 345 4.7E-116 T 13-10-2018 HCD_02795 ddfb49b2e30eeba9bf954661cd2ac16a 345 Gene3D G3DSA:3.40.50.720 6 339 4.9E-116 T 13-10-2018 HCD_02795 ddfb49b2e30eeba9bf954661cd2ac16a 345 Gene3D G3DSA:3.30.360.10 129 326 4.9E-116 T 13-10-2018 HCD_02795 ddfb49b2e30eeba9bf954661cd2ac16a 345 SMART SM00859 5 121 1.3E-34 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 HCD_02795 ddfb49b2e30eeba9bf954661cd2ac16a 345 SUPERFAMILY SSF55347 130 330 3.27E-69 T 13-10-2018 HCD_02795 ddfb49b2e30eeba9bf954661cd2ac16a 345 SUPERFAMILY SSF51735 4 158 4.47E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_02795 ddfb49b2e30eeba9bf954661cd2ac16a 345 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 140 328 1.3E-55 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 HCD_02795 ddfb49b2e30eeba9bf954661cd2ac16a 345 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 240 254 - T 13-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 HCD_02795 ddfb49b2e30eeba9bf954661cd2ac16a 345 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 5 344 1.2E-157 T 13-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 HCD_02795 ddfb49b2e30eeba9bf954661cd2ac16a 345 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 3 343 35.763 T 13-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 HCD_02795 ddfb49b2e30eeba9bf954661cd2ac16a 345 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 120 1.1E-27 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 89 233 3.9E-30 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 Gene3D G3DSA:4.10.480.10 256 373 6.7E-44 T 13-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 43 66 2.8E-5 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 254 336 9.1E-33 T 13-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 PIRSF PIRSF000310 32 388 2.2E-136 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 97 121 1.9E-84 T 13-10-2018 HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 259 277 1.9E-84 T 13-10-2018 HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 187 211 1.9E-84 T 13-10-2018 HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 283 309 1.9E-84 T 13-10-2018 HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 215 238 1.9E-84 T 13-10-2018 HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 311 324 1.9E-84 T 13-10-2018 HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 143 166 1.9E-84 T 13-10-2018 HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 241 258 1.9E-84 T 13-10-2018 HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 74 96 1.9E-84 T 13-10-2018 HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 Gene3D G3DSA:3.40.50.700 73 252 5.3E-65 T 13-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 SUPERFAMILY SSF56770 77 338 2.75E-88 T 13-10-2018 HCD_01205 c9125bb3f057463609d4d6fe4f951df6 388 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 29 386 1.5E-192 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 HCD_00605 7fa115f25857fe92e9133b3a3dc4ee74 70 Pfam PF08238 Sel1 repeat 6 39 1.7E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_00605 7fa115f25857fe92e9133b3a3dc4ee74 70 Pfam PF08238 Sel1 repeat 41 66 0.0095 T 13-10-2018 IPR006597 Sel1-like repeat HCD_00605 7fa115f25857fe92e9133b3a3dc4ee74 70 SMART SM00671 40 68 170.0 T 13-10-2018 IPR006597 Sel1-like repeat HCD_00605 7fa115f25857fe92e9133b3a3dc4ee74 70 SMART SM00671 4 39 3.8E-9 T 13-10-2018 IPR006597 Sel1-like repeat HCD_00605 7fa115f25857fe92e9133b3a3dc4ee74 70 SUPERFAMILY SSF81901 2 65 1.83E-17 T 13-10-2018 HCD_00605 7fa115f25857fe92e9133b3a3dc4ee74 70 Gene3D G3DSA:1.25.40.10 1 69 1.1E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_07225 0823be66705dc71a6021b1fe7d1e4284 390 Pfam PF13439 Glycosyltransferase Family 4 15 186 4.2E-16 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 HCD_07225 0823be66705dc71a6021b1fe7d1e4284 390 SUPERFAMILY SSF53756 2 376 1.21E-45 T 13-10-2018 HCD_07225 0823be66705dc71a6021b1fe7d1e4284 390 Gene3D G3DSA:3.40.50.2000 1 195 3.4E-21 T 13-10-2018 HCD_07225 0823be66705dc71a6021b1fe7d1e4284 390 Gene3D G3DSA:3.40.50.2000 201 365 1.1E-37 T 13-10-2018 HCD_07225 0823be66705dc71a6021b1fe7d1e4284 390 Pfam PF00534 Glycosyl transferases group 1 192 350 3.6E-26 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 HCD_01630 39880ec3570897f9ff743a52d658ecaa 94 Gene3D G3DSA:4.10.520.10 1 93 1.6E-24 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 HCD_01630 39880ec3570897f9ff743a52d658ecaa 94 SMART SM00411 1 91 2.4E-31 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 HCD_01630 39880ec3570897f9ff743a52d658ecaa 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 7.1E-12 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 HCD_01630 39880ec3570897f9ff743a52d658ecaa 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 7.1E-12 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 HCD_01630 39880ec3570897f9ff743a52d658ecaa 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 7.1E-12 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 HCD_01630 39880ec3570897f9ff743a52d658ecaa 94 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.1E-25 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 HCD_01630 39880ec3570897f9ff743a52d658ecaa 94 SUPERFAMILY SSF47729 1 92 2.06E-23 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 HCD_06065 3ece3a9fb0b2987751f709931ad4dae6 408 Gene3D G3DSA:3.30.1330.50 248 407 1.2E-54 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 HCD_06065 3ece3a9fb0b2987751f709931ad4dae6 408 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 283 298 - T 13-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 HCD_06065 3ece3a9fb0b2987751f709931ad4dae6 408 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 249 404 28.715 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 HCD_06065 3ece3a9fb0b2987751f709931ad4dae6 408 SUPERFAMILY SSF53448 39 242 3.1E-33 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_06065 3ece3a9fb0b2987751f709931ad4dae6 408 SUPERFAMILY SSF69765 250 402 2.35E-51 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 HCD_06065 3ece3a9fb0b2987751f709931ad4dae6 408 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 128 135 - T 13-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 HCD_06065 3ece3a9fb0b2987751f709931ad4dae6 408 Pfam PF02542 YgbB family 251 401 1.4E-50 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 HCD_06065 3ece3a9fb0b2987751f709931ad4dae6 408 Gene3D G3DSA:3.90.550.10 35 241 1.1E-37 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_06065 3ece3a9fb0b2987751f709931ad4dae6 408 Hamap MF_01520 Bifunctional enzyme IspD/IspF [ispDF]. 36 405 33.464 T 13-10-2018 IPR026596 Bifunctional enzyme IspD/IspF KEGG: 00900+4.6.1.12+2.7.7.60|MetaCyc: PWY-7560 HCD_06065 3ece3a9fb0b2987751f709931ad4dae6 408 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 251 400 4.9E-49 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 HCD_06065 3ece3a9fb0b2987751f709931ad4dae6 408 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 40 237 3.8E-20 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 HCD_05760 7b84d401da70be3953bf4ad948d2fba6 421 SUPERFAMILY SSF55021 342 411 8.78E-9 T 13-10-2018 HCD_05760 7b84d401da70be3953bf4ad948d2fba6 421 Gene3D G3DSA:3.30.70.260 337 410 2.8E-146 T 13-10-2018 HCD_05760 7b84d401da70be3953bf4ad948d2fba6 421 Pfam PF00742 Homoserine dehydrogenase 133 311 4.6E-60 T 13-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 HCD_05760 7b84d401da70be3953bf4ad948d2fba6 421 SUPERFAMILY SSF55347 133 298 4.38E-49 T 13-10-2018 HCD_05760 7b84d401da70be3953bf4ad948d2fba6 421 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 179 201 - T 13-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 HCD_05760 7b84d401da70be3953bf4ad948d2fba6 421 SUPERFAMILY SSF51735 1 154 1.07E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_05760 7b84d401da70be3953bf4ad948d2fba6 421 Pfam PF01842 ACT domain 342 407 2.3E-12 T 13-10-2018 IPR002912 ACT domain HCD_05760 7b84d401da70be3953bf4ad948d2fba6 421 PIRSF PIRSF000098 2 421 9.1E-161 T 13-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 HCD_05760 7b84d401da70be3953bf4ad948d2fba6 421 Gene3D G3DSA:3.40.50.720 7 328 2.8E-146 T 13-10-2018 HCD_05760 7b84d401da70be3953bf4ad948d2fba6 421 Gene3D G3DSA:3.30.360.10 132 336 2.8E-146 T 13-10-2018 HCD_05760 7b84d401da70be3953bf4ad948d2fba6 421 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 11 119 8.4E-11 T 13-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 HCD_00745 0975811f242c011e89ded493ca37c891 359 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 1 354 9.0E-159 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 HCD_00745 0975811f242c011e89ded493ca37c891 359 Gene3D G3DSA:1.10.150.530 2 60 4.2E-9 T 13-10-2018 HCD_00745 0975811f242c011e89ded493ca37c891 359 Pfam PF13394 4Fe-4S single cluster domain 122 210 2.4E-7 T 13-10-2018 HCD_00745 0975811f242c011e89ded493ca37c891 359 Pfam PF04055 Radical SAM superfamily 118 278 6.9E-13 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 HCD_00745 0975811f242c011e89ded493ca37c891 359 Gene3D G3DSA:3.20.20.70 62 338 1.3E-86 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_00745 0975811f242c011e89ded493ca37c891 359 PIRSF PIRSF006004 1 358 7.0E-125 T 13-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 HCD_00745 0975811f242c011e89ded493ca37c891 359 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 2 354 65.353 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 HCD_00745 0975811f242c011e89ded493ca37c891 359 SUPERFAMILY SSF102114 110 318 4.97E-11 T 13-10-2018 HCD_06830 7bd14f90038d58f7ce6550c42b222890 309 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 309 48.189 T 13-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 HCD_06830 7bd14f90038d58f7ce6550c42b222890 309 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 5 120 1.8E-50 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 HCD_06830 7bd14f90038d58f7ce6550c42b222890 309 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 128 143 - T 13-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 HCD_06830 7bd14f90038d58f7ce6550c42b222890 309 Pfam PF14572 Phosphoribosyl synthetase-associated domain 198 308 4.0E-29 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 HCD_06830 7bd14f90038d58f7ce6550c42b222890 309 Gene3D G3DSA:3.40.50.2020 7 297 2.1E-124 T 13-10-2018 HCD_06830 7bd14f90038d58f7ce6550c42b222890 309 Gene3D G3DSA:3.40.50.2020 147 285 2.1E-124 T 13-10-2018 HCD_06830 7bd14f90038d58f7ce6550c42b222890 309 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 5 309 5.5E-122 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 HCD_06830 7bd14f90038d58f7ce6550c42b222890 309 SUPERFAMILY SSF53271 69 301 5.35E-62 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like HCD_06830 7bd14f90038d58f7ce6550c42b222890 309 SMART SM01400 4 120 1.1E-79 T 13-10-2018 HCD_02000 70d4b5b340647fb45f56100246452655 237 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 77 234 4.1E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 HCD_02000 70d4b5b340647fb45f56100246452655 237 SUPERFAMILY SSF161098 30 232 4.97E-37 T 13-10-2018 IPR035906 MetI-like superfamily HCD_02000 70d4b5b340647fb45f56100246452655 237 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 29 131 9.9E-22 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 HCD_02000 70d4b5b340647fb45f56100246452655 237 Gene3D G3DSA:1.10.3720.10 24 237 7.7E-45 T 13-10-2018 IPR035906 MetI-like superfamily HCD_05440 a25ab4c941f98eb48d8a94d97b8d5ae4 255 Pfam PF01177 Asp/Glu/Hydantoin racemase 3 217 7.2E-34 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 HCD_05440 a25ab4c941f98eb48d8a94d97b8d5ae4 255 Gene3D G3DSA:3.40.50.1860 3 242 1.6E-79 T 13-10-2018 HCD_05440 a25ab4c941f98eb48d8a94d97b8d5ae4 255 TIGRFAM TIGR00067 glut_race: glutamate racemase 3 254 7.5E-86 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 HCD_05440 a25ab4c941f98eb48d8a94d97b8d5ae4 255 SUPERFAMILY SSF53681 111 254 8.28E-26 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 HCD_05440 a25ab4c941f98eb48d8a94d97b8d5ae4 255 Hamap MF_00258 Glutamate racemase [murI]. 1 255 29.925 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 HCD_05440 a25ab4c941f98eb48d8a94d97b8d5ae4 255 SUPERFAMILY SSF53681 1 101 1.59E-29 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 HCD_05440 a25ab4c941f98eb48d8a94d97b8d5ae4 255 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 177 187 - T 13-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 HCD_05440 a25ab4c941f98eb48d8a94d97b8d5ae4 255 Gene3D G3DSA:3.40.50.1860 92 209 1.6E-79 T 13-10-2018 HCD_05440 a25ab4c941f98eb48d8a94d97b8d5ae4 255 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 67 75 - T 13-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 HCD_01790 dd19f2c9c51c796009f720eaa2ac3b5c 400 SUPERFAMILY SSF50978 154 368 4.76E-9 T 13-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 HCD_01790 dd19f2c9c51c796009f720eaa2ac3b5c 400 Gene3D G3DSA:2.130.10.10 136 344 4.7E-9 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 HCD_01535 3810105ba3269a2895bf188391ace517 354 Pfam PF02253 Phospholipase A1 238 352 1.1E-19 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 HCD_01535 3810105ba3269a2895bf188391ace517 354 Pfam PF02253 Phospholipase A1 67 190 1.6E-27 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 HCD_01535 3810105ba3269a2895bf188391ace517 354 PRINTS PR01486 Bacterial phospholipase A1 protein signature 123 139 1.3E-9 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 HCD_01535 3810105ba3269a2895bf188391ace517 354 PRINTS PR01486 Bacterial phospholipase A1 protein signature 268 288 1.3E-9 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 HCD_01535 3810105ba3269a2895bf188391ace517 354 PRINTS PR01486 Bacterial phospholipase A1 protein signature 146 165 1.3E-9 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 HCD_01535 3810105ba3269a2895bf188391ace517 354 PRINTS PR01486 Bacterial phospholipase A1 protein signature 101 118 1.3E-9 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 HCD_01535 3810105ba3269a2895bf188391ace517 354 SUPERFAMILY SSF56931 62 353 2.22E-55 T 13-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 HCD_03775 c1e042d53702b4162f307af0adf81aaf 140 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site HCD_03775 c1e042d53702b4162f307af0adf81aaf 140 PIRSF PIRSF002889 1 137 5.1E-38 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 HCD_03775 c1e042d53702b4162f307af0adf81aaf 140 Pfam PF00460 Flagella basal body rod protein 13 34 2.1E-6 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 HCD_03775 c1e042d53702b4162f307af0adf81aaf 140 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 3 135 9.3E-43 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 HCD_03050 3ee15d75df099a3f23513c4892538c68 307 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 HCD_03050 3ee15d75df099a3f23513c4892538c68 307 TIGRFAM TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II 2 307 1.9E-124 T 13-10-2018 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 GO:0004332|GO:0006096|GO:0008270|GO:0030388 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 HCD_03050 3ee15d75df099a3f23513c4892538c68 307 Gene3D G3DSA:3.20.20.70 1 307 8.1E-129 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_03050 3ee15d75df099a3f23513c4892538c68 307 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 72 84 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 HCD_03050 3ee15d75df099a3f23513c4892538c68 307 SUPERFAMILY SSF51569 1 306 2.05E-98 T 13-10-2018 HCD_03050 3ee15d75df099a3f23513c4892538c68 307 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 306 6.0E-94 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 HCD_03050 3ee15d75df099a3f23513c4892538c68 307 PIRSF PIRSF001359 1 307 9.3E-116 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 HCD_03050 3ee15d75df099a3f23513c4892538c68 307 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 307 6.4E-110 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 HCD_06425 984129ccc5a6f692557eb099eee47121 307 Gene3D G3DSA:3.40.50.1370 137 285 2.0E-83 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 HCD_06425 984129ccc5a6f692557eb099eee47121 307 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 6 306 3.7E-108 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_06425 984129ccc5a6f692557eb099eee47121 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 136 153 2.1E-29 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_06425 984129ccc5a6f692557eb099eee47121 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 220 229 2.1E-29 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_06425 984129ccc5a6f692557eb099eee47121 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 43 65 2.1E-29 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_06425 984129ccc5a6f692557eb099eee47121 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 287 301 2.1E-29 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_06425 984129ccc5a6f692557eb099eee47121 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 81 90 2.1E-29 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_06425 984129ccc5a6f692557eb099eee47121 307 PRINTS PR00101 Aspartate carbamoyltransferase signature 263 268 2.1E-29 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_06425 984129ccc5a6f692557eb099eee47121 307 SUPERFAMILY SSF53671 4 306 9.95E-83 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 HCD_06425 984129ccc5a6f692557eb099eee47121 307 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 5 307 36.846 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_06425 984129ccc5a6f692557eb099eee47121 307 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 HCD_06425 984129ccc5a6f692557eb099eee47121 307 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 1.9E-19 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 HCD_06425 984129ccc5a6f692557eb099eee47121 307 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 137 148 1.9E-19 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 HCD_06425 984129ccc5a6f692557eb099eee47121 307 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 271 294 1.9E-19 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 HCD_06425 984129ccc5a6f692557eb099eee47121 307 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 259 268 1.9E-19 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 HCD_06425 984129ccc5a6f692557eb099eee47121 307 Gene3D G3DSA:3.40.50.1370 10 302 2.0E-83 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 HCD_06425 984129ccc5a6f692557eb099eee47121 307 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 6 149 2.2E-38 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 HCD_06425 984129ccc5a6f692557eb099eee47121 307 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 160 304 1.3E-26 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 HCD_06800 0f724fa7ca3e34201e1695aa2b26fb48 369 PIRSF PIRSF000524 1 368 8.8E-84 T 13-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 HCD_06800 0f724fa7ca3e34201e1695aa2b26fb48 369 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 175 195 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site HCD_06800 0f724fa7ca3e34201e1695aa2b26fb48 369 Gene3D G3DSA:3.40.640.10 12 251 2.5E-80 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 HCD_06800 0f724fa7ca3e34201e1695aa2b26fb48 369 SUPERFAMILY SSF53383 2 350 1.51E-66 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase HCD_06800 0f724fa7ca3e34201e1695aa2b26fb48 369 Gene3D G3DSA:3.90.1150.10 7 352 2.5E-80 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 HCD_06800 0f724fa7ca3e34201e1695aa2b26fb48 369 Pfam PF00266 Aminotransferase class-V 22 317 5.1E-26 T 13-10-2018 IPR000192 Aminotransferase class V domain HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 Gene3D G3DSA:3.40.50.11260 401 487 6.2E-26 T 13-10-2018 HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 SUPERFAMILY SSF110942 508 618 5.49E-25 T 13-10-2018 IPR037196 HSP90, C-terminal domain HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 Pfam PF00183 Hsp90 protein 219 620 2.3E-109 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 SMART SM00387 26 181 1.0E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 SUPERFAMILY SSF55874 4 210 1.09E-64 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 PIRSF PIRSF002583 1 621 1.5E-200 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 154 3.2E-14 T 13-10-2018 HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 Gene3D G3DSA:3.30.70.2140 210 231 1.6E-78 T 13-10-2018 HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 24 33 - T 13-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 PRINTS PR00775 90kDa heat shock protein signature 119 141 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 PRINTS PR00775 90kDa heat shock protein signature 25 47 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 PRINTS PR00775 90kDa heat shock protein signature 187 205 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 PRINTS PR00775 90kDa heat shock protein signature 92 109 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 PRINTS PR00775 90kDa heat shock protein signature 169 186 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 PRINTS PR00775 90kDa heat shock protein signature 4 24 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 PRINTS PR00775 90kDa heat shock protein signature 74 91 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 Hamap MF_00505 Chaperone protein HtpG [htpG]. 1 618 29.374 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 SUPERFAMILY SSF54211 235 485 4.93E-91 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 Gene3D G3DSA:3.30.230.80 252 400 4.3E-62 T 13-10-2018 HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 Gene3D G3DSA:1.20.120.790 499 619 2.1E-30 T 13-10-2018 IPR037196 HSP90, C-terminal domain HCD_07425 6a38c4c23b861fca73ded8beebcfbf14 621 Gene3D G3DSA:3.30.565.10 5 209 1.6E-78 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily HCD_02830 025676336670db5439364ff3823cbbce 660 SUPERFAMILY SSF46600 618 659 2.88E-11 T 13-10-2018 IPR036876 UVR domain superfamily HCD_02830 025676336670db5439364ff3823cbbce 660 SMART SM00490 462 548 1.1E-17 T 13-10-2018 IPR001650 Helicase, C-terminal HCD_02830 025676336670db5439364ff3823cbbce 660 Gene3D G3DSA:3.40.50.300 269 416 1.6E-46 T 13-10-2018 HCD_02830 025676336670db5439364ff3823cbbce 660 Pfam PF04851 Type III restriction enzyme, res subunit 15 137 5.6E-12 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 HCD_02830 025676336670db5439364ff3823cbbce 660 Gene3D G3DSA:3.40.50.300 417 592 4.7E-45 T 13-10-2018 HCD_02830 025676336670db5439364ff3823cbbce 660 SUPERFAMILY SSF52540 36 585 8.11E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02830 025676336670db5439364ff3823cbbce 660 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 4 658 0.0 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 HCD_02830 025676336670db5439364ff3823cbbce 660 SMART SM00487 8 428 1.7E-28 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain HCD_02830 025676336670db5439364ff3823cbbce 660 Pfam PF02151 UvrB/uvrC motif 625 659 7.8E-11 T 13-10-2018 IPR001943 UVR domain GO:0005515 HCD_02830 025676336670db5439364ff3823cbbce 660 Pfam PF00271 Helicase conserved C-terminal domain 445 547 4.2E-18 T 13-10-2018 IPR001650 Helicase, C-terminal HCD_02830 025676336670db5439364ff3823cbbce 660 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 660 41.998 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 HCD_02830 025676336670db5439364ff3823cbbce 660 Pfam PF12344 Ultra-violet resistance protein B 554 595 3.3E-16 T 13-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain HCD_02830 025676336670db5439364ff3823cbbce 660 Gene3D G3DSA:4.10.860.10 611 660 2.1E-8 T 13-10-2018 HCD_02830 025676336670db5439364ff3823cbbce 660 SUPERFAMILY SSF52540 2 417 6.12E-124 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02830 025676336670db5439364ff3823cbbce 660 Gene3D G3DSA:3.40.50.300 1 242 6.9E-71 T 13-10-2018 HCD_01110 cdf6246b5f5b84ac353099c13a7759e9 332 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 88 98 - T 13-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 HCD_01110 cdf6246b5f5b84ac353099c13a7759e9 332 Gene3D G3DSA:3.40.50.1170 1 219 3.5E-89 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 HCD_01110 cdf6246b5f5b84ac353099c13a7759e9 332 SMART SM00870 7 326 6.6E-137 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 HCD_01110 cdf6246b5f5b84ac353099c13a7759e9 332 Gene3D G3DSA:3.40.50.40 220 331 5.1E-43 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 HCD_01110 cdf6246b5f5b84ac353099c13a7759e9 332 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 10 18 - T 13-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 HCD_01110 cdf6246b5f5b84ac353099c13a7759e9 332 Pfam PF00710 Asparaginase, N-terminal 8 199 1.9E-57 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 HCD_01110 cdf6246b5f5b84ac353099c13a7759e9 332 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 2 332 3.6E-155 T 13-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 HCD_01110 cdf6246b5f5b84ac353099c13a7759e9 332 PIRSF PIRSF001220 2 332 8.8E-93 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 HCD_01110 cdf6246b5f5b84ac353099c13a7759e9 332 SUPERFAMILY SSF53774 3 331 4.97E-99 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 HCD_01110 cdf6246b5f5b84ac353099c13a7759e9 332 PIRSF PIRSF500176 4 332 3.3E-79 T 13-10-2018 HCD_01110 cdf6246b5f5b84ac353099c13a7759e9 332 PRINTS PR00139 Asparaginase/glutaminase family signature 8 19 2.1E-22 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 HCD_01110 cdf6246b5f5b84ac353099c13a7759e9 332 PRINTS PR00139 Asparaginase/glutaminase family signature 267 285 2.1E-22 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 HCD_01110 cdf6246b5f5b84ac353099c13a7759e9 332 PRINTS PR00139 Asparaginase/glutaminase family signature 87 105 2.1E-22 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 HCD_04410 dfe1c5aeb835fd4654c66d04c90d6633 449 Pfam PF02875 Mur ligase family, glutamate ligase domain 294 374 1.1E-17 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 HCD_04410 dfe1c5aeb835fd4654c66d04c90d6633 449 SUPERFAMILY SSF53623 66 292 4.58E-50 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 HCD_04410 dfe1c5aeb835fd4654c66d04c90d6633 449 Gene3D G3DSA:3.40.1190.10 64 297 1.8E-54 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 HCD_04410 dfe1c5aeb835fd4654c66d04c90d6633 449 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 443 26.886 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 HCD_04410 dfe1c5aeb835fd4654c66d04c90d6633 449 SUPERFAMILY SSF53244 294 445 1.17E-37 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 HCD_04410 dfe1c5aeb835fd4654c66d04c90d6633 449 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 37 443 5.8E-131 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 HCD_04410 dfe1c5aeb835fd4654c66d04c90d6633 449 Pfam PF08245 Mur ligase middle domain 72 270 7.0E-40 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 HCD_04410 dfe1c5aeb835fd4654c66d04c90d6633 449 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 70 94 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 HCD_04410 dfe1c5aeb835fd4654c66d04c90d6633 449 Gene3D G3DSA:3.90.190.20 298 448 1.5E-47 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 HCD_04785 3142bcd558546702b45487d0e9bdcff1 447 SUPERFAMILY SSF116734 9 223 2.29E-41 T 13-10-2018 HCD_04785 3142bcd558546702b45487d0e9bdcff1 447 SUPERFAMILY SSF116734 227 444 1.06E-41 T 13-10-2018 HCD_04785 3142bcd558546702b45487d0e9bdcff1 447 Gene3D G3DSA:3.90.220.20 223 443 7.0E-42 T 13-10-2018 HCD_04785 3142bcd558546702b45487d0e9bdcff1 447 Gene3D G3DSA:3.90.220.20 6 222 2.5E-40 T 13-10-2018 HCD_04785 3142bcd558546702b45487d0e9bdcff1 447 Pfam PF01420 Type I restriction modification DNA specificity domain 22 204 1.5E-19 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 HCD_04785 3142bcd558546702b45487d0e9bdcff1 447 Pfam PF01420 Type I restriction modification DNA specificity domain 275 425 1.3E-19 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 HCD_04485 f70a3e27a50883e6cce31c932ce23e53 344 SUPERFAMILY SSF53927 7 171 5.42E-19 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 HCD_04485 f70a3e27a50883e6cce31c932ce23e53 344 Gene3D G3DSA:3.40.140.10 2 171 6.6E-19 T 13-10-2018 HCD_04485 f70a3e27a50883e6cce31c932ce23e53 344 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 1 130 2.5E-18 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain HCD_04485 f70a3e27a50883e6cce31c932ce23e53 344 SUPERFAMILY SSF53597 191 339 1.11E-13 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 HCD_04485 f70a3e27a50883e6cce31c932ce23e53 344 Gene3D G3DSA:3.40.430.10 172 316 1.2E-6 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 HCD_02770 05f7357942b8b4bd432a6beb8f0ca336 253 PIRSF PIRSF004976 2 252 3.2E-65 T 13-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 HCD_02770 05f7357942b8b4bd432a6beb8f0ca336 253 SUPERFAMILY SSF52402 7 198 1.12E-45 T 13-10-2018 HCD_02770 05f7357942b8b4bd432a6beb8f0ca336 253 Gene3D G3DSA:3.40.50.620 2 249 2.9E-45 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_02770 05f7357942b8b4bd432a6beb8f0ca336 253 Pfam PF01171 PP-loop family 28 195 5.7E-20 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 660 697 5.3E-16 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 614 650 4.7E-16 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 570 605 3.5E-15 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 Gene3D G3DSA:2.70.20.10 184 451 1.8E-146 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 Pfam PF01131 DNA topoisomerase 128 542 9.0E-123 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 SUPERFAMILY SSF57783 610 650 3.23E-13 T 13-10-2018 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 Gene3D G3DSA:3.40.50.140 1 134 1.6E-46 T 13-10-2018 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 SMART SM00436 104 192 3.5E-48 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 Pfam PF01751 Toprim domain 4 113 2.2E-26 T 13-10-2018 IPR006171 TOPRIM domain HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 4 603 1.9E-255 T 13-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 370 386 2.2E-34 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 77 90 2.2E-34 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 467 481 2.2E-34 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 162 180 2.2E-34 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 292 301 2.2E-34 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 Gene3D G3DSA:3.30.65.10 555 607 5.3E-10 T 13-10-2018 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 Gene3D G3DSA:3.30.65.10 608 656 1.0E-13 T 13-10-2018 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 SMART SM00493 2 103 5.0E-26 T 13-10-2018 IPR006171 TOPRIM domain HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 Gene3D G3DSA:1.10.290.10 250 385 1.8E-146 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 SUPERFAMILY SSF57783 569 603 1.7E-9 T 13-10-2018 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 SMART SM00437 242 504 1.0E-120 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 SUPERFAMILY SSF56712 1 580 3.79E-175 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 SUPERFAMILY SSF57783 658 693 1.11E-7 T 13-10-2018 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 Hamap MF_00952 DNA topoisomerase 1 [topA]. 2 684 52.202 T 13-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 Gene3D G3DSA:1.10.460.10 135 544 1.8E-146 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 HCD_03455 2fc0efebb2b11eb0b4d150ca2ff37f9f 733 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 279 301 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 HCD_01805 866014adb7824b58f5ac047e94943199 164 Gene3D G3DSA:3.10.50.30 79 156 7.3E-27 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 HCD_01805 866014adb7824b58f5ac047e94943199 164 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 HCD_01805 866014adb7824b58f5ac047e94943199 164 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 155 32.094 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 HCD_01805 866014adb7824b58f5ac047e94943199 164 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 156 1.5E-27 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 HCD_01805 866014adb7824b58f5ac047e94943199 164 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 120 136 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 HCD_01805 866014adb7824b58f5ac047e94943199 164 Gene3D G3DSA:1.10.287.180 1 75 7.4E-28 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 HCD_01805 866014adb7824b58f5ac047e94943199 164 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 4.1E-28 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 HCD_01805 866014adb7824b58f5ac047e94943199 164 SUPERFAMILY SSF54534 81 156 8.11E-22 T 13-10-2018 HCD_01805 866014adb7824b58f5ac047e94943199 164 PIRSF PIRSF006092 1 158 2.1E-50 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 HCD_01805 866014adb7824b58f5ac047e94943199 164 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 154 2.2E-60 T 13-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 HCD_01805 866014adb7824b58f5ac047e94943199 164 SUPERFAMILY SSF46557 3 77 5.49E-27 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 HCD_02340 1ec6c6e7a5d095ee96f45e43c75ea591 431 Gene3D G3DSA:1.25.40.10 320 430 1.4E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_02340 1ec6c6e7a5d095ee96f45e43c75ea591 431 SUPERFAMILY SSF48452 322 409 1.75E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_02340 1ec6c6e7a5d095ee96f45e43c75ea591 431 Gene3D G3DSA:1.25.40.10 36 193 1.5E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_02340 1ec6c6e7a5d095ee96f45e43c75ea591 431 TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 103 127 0.0027 T 13-10-2018 IPR002885 Pentatricopeptide repeat HCD_02340 1ec6c6e7a5d095ee96f45e43c75ea591 431 SUPERFAMILY SSF81901 38 252 1.12E-9 T 13-10-2018 HCD_02340 1ec6c6e7a5d095ee96f45e43c75ea591 431 Pfam PF01535 PPR repeat 103 127 0.0021 T 13-10-2018 IPR002885 Pentatricopeptide repeat HCD_04800 eb86d662162607948a1babff9f69081a 843 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 366 502 2.2E-21 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 HCD_04800 eb86d662162607948a1babff9f69081a 843 Hamap MF_01973 Lon protease [lon]. 8 843 60.225 T 13-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 HCD_04800 eb86d662162607948a1babff9f69081a 843 SUPERFAMILY SSF52540 313 576 2.88E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04800 eb86d662162607948a1babff9f69081a 843 SUPERFAMILY SSF88697 9 198 2.73E-21 T 13-10-2018 IPR015947 PUA-like superfamily HCD_04800 eb86d662162607948a1babff9f69081a 843 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 370 389 2.2E-47 T 13-10-2018 HCD_04800 eb86d662162607948a1babff9f69081a 843 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 743 762 2.2E-47 T 13-10-2018 HCD_04800 eb86d662162607948a1babff9f69081a 843 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 773 792 2.2E-47 T 13-10-2018 HCD_04800 eb86d662162607948a1babff9f69081a 843 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 796 814 2.2E-47 T 13-10-2018 HCD_04800 eb86d662162607948a1babff9f69081a 843 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 645 661 2.2E-47 T 13-10-2018 HCD_04800 eb86d662162607948a1babff9f69081a 843 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 620 842 2.0E-72 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 HCD_04800 eb86d662162607948a1babff9f69081a 843 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 746 754 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 HCD_04800 eb86d662162607948a1babff9f69081a 843 Gene3D G3DSA:3.40.50.300 313 505 3.1E-60 T 13-10-2018 HCD_04800 eb86d662162607948a1babff9f69081a 843 Gene3D G3DSA:1.10.8.60 506 595 1.1E-26 T 13-10-2018 HCD_04800 eb86d662162607948a1babff9f69081a 843 TIGRFAM TIGR00763 lon: endopeptidase La 11 842 4.2E-292 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 HCD_04800 eb86d662162607948a1babff9f69081a 843 Gene3D G3DSA:2.30.130.40 1 113 1.7E-17 T 13-10-2018 HCD_04800 eb86d662162607948a1babff9f69081a 843 PIRSF PIRSF001174 1 843 2.0E-271 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 HCD_04800 eb86d662162607948a1babff9f69081a 843 SMART SM00464 8 200 1.8E-46 T 13-10-2018 IPR003111 Lon, substrate-binding domain HCD_04800 eb86d662162607948a1babff9f69081a 843 Gene3D G3DSA:1.20.58.1480 119 242 1.8E-26 T 13-10-2018 HCD_04800 eb86d662162607948a1babff9f69081a 843 SMART SM00382 362 507 2.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_04800 eb86d662162607948a1babff9f69081a 843 Gene3D G3DSA:3.30.230.10 636 842 1.9E-69 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup HCD_04800 eb86d662162607948a1babff9f69081a 843 SUPERFAMILY SSF54211 645 839 5.69E-45 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_04800 eb86d662162607948a1babff9f69081a 843 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 9 198 4.7E-25 T 13-10-2018 IPR003111 Lon, substrate-binding domain HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 Gene3D G3DSA:1.25.40.10 26 289 3.4E-69 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 SUPERFAMILY SSF81901 31 283 2.09E-56 T 13-10-2018 HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 Pfam PF08238 Sel1 repeat 98 127 9.4E-5 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 Pfam PF08238 Sel1 repeat 40 56 140.0 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 Pfam PF08238 Sel1 repeat 138 166 9.0E-8 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 Pfam PF08238 Sel1 repeat 170 193 0.19 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 Pfam PF08238 Sel1 repeat 66 94 4.1E-5 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 Pfam PF08238 Sel1 repeat 206 237 3.5E-4 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 Pfam PF08238 Sel1 repeat 242 274 0.018 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 SMART SM00671 60 95 4.5E-8 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 SMART SM00671 96 131 9.0E-5 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 SMART SM00671 240 275 5.3E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 SMART SM00671 132 167 1.5E-9 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 SMART SM00671 168 203 1.3E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03120 335fe54a9deb2751b33b7eeffacc1a4a 289 SMART SM00671 204 239 2.7E-7 T 13-10-2018 IPR006597 Sel1-like repeat HCD_01760 b1e6d17fc0e55ae7d68beb9788146d91 191 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 187 38.814 T 13-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 HCD_01760 b1e6d17fc0e55ae7d68beb9788146d91 191 SUPERFAMILY SSF53697 1 185 1.7E-55 T 13-10-2018 HCD_01760 b1e6d17fc0e55ae7d68beb9788146d91 191 Pfam PF13580 SIS domain 12 144 2.1E-27 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 HCD_01760 b1e6d17fc0e55ae7d68beb9788146d91 191 Gene3D G3DSA:3.40.50.10490 1 187 1.0E-77 T 13-10-2018 HCD_01760 b1e6d17fc0e55ae7d68beb9788146d91 191 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 31 184 7.3E-80 T 13-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 HCD_08475 7f269ad950661a22a5d058b84dbc2077 388 Gene3D G3DSA:1.20.1250.20 2 382 2.2E-29 T 13-10-2018 HCD_08475 7f269ad950661a22a5d058b84dbc2077 388 Pfam PF07690 Major Facilitator Superfamily 14 347 8.1E-22 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 HCD_08475 7f269ad950661a22a5d058b84dbc2077 388 SUPERFAMILY SSF103473 5 381 7.06E-31 T 13-10-2018 IPR036259 MFS transporter superfamily HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 165 2.5E-21 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 205 366 2.4E-26 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 SUPERFAMILY SSF52540 197 465 3.9E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 SUPERFAMILY SSF52540 10 169 2.84E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 Gene3D G3DSA:3.40.50.300 10 171 5.0E-36 T 13-10-2018 HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 PIRSF PIRSF006485 7 467 2.5E-140 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 Pfam PF01926 50S ribosome-binding GTPase 11 124 3.6E-22 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 Pfam PF01926 50S ribosome-binding GTPase 207 324 1.3E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 10 459 1.3E-140 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 Gene3D G3DSA:3.30.300.20 379 462 1.5E-30 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 208 228 2.8E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 230 248 2.8E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 379 458 1.7E-29 T 13-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 Hamap MF_00195 GTPase Der [der]. 8 462 31.21 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 HCD_01625 297b45e8120356f3ba2bc75a981c03e6 468 Gene3D G3DSA:3.40.50.300 200 377 1.3E-43 T 13-10-2018 HCD_07885 583c9332c129114fd8a77af3d167c0fa 181 Gene3D G3DSA:2.30.30.240 96 179 4.0E-8 T 13-10-2018 HCD_07885 583c9332c129114fd8a77af3d167c0fa 181 SUPERFAMILY SSF50346 101 169 2.67E-7 T 13-10-2018 IPR011033 PRC-barrel-like superfamily HCD_07885 583c9332c129114fd8a77af3d167c0fa 181 Gene3D G3DSA:2.40.30.60 1 90 2.4E-8 T 13-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 HCD_07885 583c9332c129114fd8a77af3d167c0fa 181 SUPERFAMILY SSF50447 2 88 3.04E-6 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily HCD_07885 583c9332c129114fd8a77af3d167c0fa 181 Pfam PF05239 PRC-barrel domain 98 165 1.6E-5 T 13-10-2018 IPR027275 PRC-barrel domain HCD_07885 583c9332c129114fd8a77af3d167c0fa 181 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 1 170 1.9E-37 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 HCD_07885 583c9332c129114fd8a77af3d167c0fa 181 Pfam PF01782 RimM N-terminal domain 4 88 6.5E-11 T 13-10-2018 IPR002676 RimM, N-terminal GO:0006364 HCD_07885 583c9332c129114fd8a77af3d167c0fa 181 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 1 177 16.949 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 HCD_05610 86a4c69b5be640233743ef9c87947640 452 PIRSF PIRSF003095 1 449 5.5E-112 T 13-10-2018 IPR005215 Trigger factor GO:0015031 HCD_05610 86a4c69b5be640233743ef9c87947640 452 Hamap MF_00303 Trigger factor [tig]. 1 434 19.345 T 13-10-2018 IPR005215 Trigger factor GO:0015031 HCD_05610 86a4c69b5be640233743ef9c87947640 452 Gene3D G3DSA:1.10.3120.10 118 428 5.1E-73 T 13-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 HCD_05610 86a4c69b5be640233743ef9c87947640 452 SUPERFAMILY SSF109998 252 433 2.35E-30 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily HCD_05610 86a4c69b5be640233743ef9c87947640 452 TIGRFAM TIGR00115 tig: trigger factor 17 425 2.5E-111 T 13-10-2018 IPR005215 Trigger factor GO:0015031 HCD_05610 86a4c69b5be640233743ef9c87947640 452 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 159 241 6.1E-13 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain HCD_05610 86a4c69b5be640233743ef9c87947640 452 Pfam PF05697 Bacterial trigger factor protein (TF) 1 146 3.6E-29 T 13-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 HCD_05610 86a4c69b5be640233743ef9c87947640 452 Gene3D G3DSA:3.30.70.1050 1 117 4.2E-22 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 HCD_05610 86a4c69b5be640233743ef9c87947640 452 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 268 426 2.1E-34 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 HCD_05610 86a4c69b5be640233743ef9c87947640 452 SUPERFAMILY SSF102735 1 125 2.88E-24 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 HCD_05610 86a4c69b5be640233743ef9c87947640 452 Gene3D G3DSA:3.10.50.40 152 250 5.1E-73 T 13-10-2018 HCD_05610 86a4c69b5be640233743ef9c87947640 452 SUPERFAMILY SSF54534 134 248 7.07E-27 T 13-10-2018 HCD_06735 120f31ca92d07987d869897504087207 213 Gene3D G3DSA:3.40.50.11650 12 138 1.9E-45 T 13-10-2018 HCD_06735 120f31ca92d07987d869897504087207 213 SUPERFAMILY SSF53756 13 205 7.85E-25 T 13-10-2018 HCD_04725 f3d322d4b75d6d637329d43d605d1298 524 Gene3D G3DSA:3.40.50.300 234 522 2.5E-25 T 13-10-2018 HCD_04725 f3d322d4b75d6d637329d43d605d1298 524 SUPERFAMILY SSF52540 9 505 1.39E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04725 f3d322d4b75d6d637329d43d605d1298 524 PIRSF PIRSF003128 8 524 2.3E-123 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 HCD_04725 f3d322d4b75d6d637329d43d605d1298 524 Gene3D G3DSA:3.40.50.300 7 209 7.0E-7 T 13-10-2018 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 2 805 20.563 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 Gene3D G3DSA:1.10.730.10 594 742 2.5E-29 T 13-10-2018 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 218 397 2.0E-53 T 13-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 Gene3D G3DSA:2.30.210.10 569 583 1.3E-220 T 13-10-2018 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 Gene3D G3DSA:3.90.740.10 225 410 1.3E-220 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 SUPERFAMILY SSF47323 614 805 8.78E-19 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 PRINTS PR00985 Leucyl-tRNA synthetase signature 480 498 1.0E-46 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 PRINTS PR00985 Leucyl-tRNA synthetase signature 181 194 1.0E-46 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 PRINTS PR00985 Leucyl-tRNA synthetase signature 123 140 1.0E-46 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 PRINTS PR00985 Leucyl-tRNA synthetase signature 521 543 1.0E-46 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 PRINTS PR00985 Leucyl-tRNA synthetase signature 554 564 1.0E-46 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 PRINTS PR00985 Leucyl-tRNA synthetase signature 212 231 1.0E-46 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 PRINTS PR00985 Leucyl-tRNA synthetase signature 149 165 1.0E-46 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 Gene3D G3DSA:3.10.20.590 746 806 6.3E-14 T 13-10-2018 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 Pfam PF09334 tRNA synthetases class I (M) 32 178 1.4E-25 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 412 611 2.6E-24 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 SUPERFAMILY SSF50677 223 410 6.38E-40 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 SUPERFAMILY SSF52374 2 620 4.73E-141 T 13-10-2018 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 2 568 1.6E-271 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 HCD_03860 ac7ed7333be92e2d876162d24394832a 806 Gene3D G3DSA:3.40.50.620 30 568 1.3E-220 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_03860 ac7ed7333be92e2d876162d24394832a 806 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 38 49 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:1.10.274.100 1878 1939 3.0E-20 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Pfam PF04983 RNA polymerase Rpb1, domain 3 1878 2020 1.6E-24 T 13-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:3.90.1110.10 330 451 1.7E-28 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:1.10.1790.20 2644 2823 1.1E-60 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Pfam PF00562 RNA polymerase Rpb2, domain 6 732 1295 3.2E-147 T 13-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:2.40.50.100 2660 2725 1.1E-60 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:2.40.270.10 804 843 1.8E-6 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:3.90.1100.10 452 634 5.7E-61 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 1400 2877 0.0 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:2.40.50.100 728 803 4.8E-25 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1371 0.0 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 SMART SM00663 1624 1903 1.5E-173 T 13-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:1.10.274.100 1940 2016 6.5E-15 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 1392 2887 18.706 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:3.90.1800.10 1284 1336 1.6E-9 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:1.10.150.390 2826 2885 5.0E-23 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Pfam PF04565 RNA polymerase Rpb2, domain 3 527 595 9.3E-29 T 13-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1091 1103 - T 13-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Pfam PF00623 RNA polymerase Rpb1, domain 2 1733 1874 1.4E-36 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Pfam PF04997 RNA polymerase Rpb1, domain 1 1394 1731 7.0E-86 T 13-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:2.40.50.150 844 959 5.8E-35 T 13-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Pfam PF04561 RNA polymerase Rpb2, domain 2 154 224 1.5E-9 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Pfam PF04561 RNA polymerase Rpb2, domain 2 360 466 4.4E-18 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1374 11.524 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:3.90.1100.10 654 727 1.4E-18 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:3.90.1100.10 18 158 9.3E-51 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 SUPERFAMILY SSF64484 1394 2875 0.0 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Pfam PF04560 RNA polymerase Rpb2, domain 7 1298 1372 1.6E-24 T 13-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Pfam PF04563 RNA polymerase beta subunit 27 514 1.2E-21 T 13-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Pfam PF04998 RNA polymerase Rpb1, domain 5 2131 2822 1.2E-65 T 13-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Pfam PF10385 RNA polymerase beta subunit external 1 domain 605 670 7.9E-17 T 13-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:1.10.40.90 1763 1805 2.2E-18 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:2.40.50.100 2545 2635 4.3E-20 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 SUPERFAMILY SSF64484 13 1375 0.0 T 13-10-2018 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Pfam PF05000 RNA polymerase Rpb1, domain 4 2049 2128 1.2E-16 T 13-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:1.10.132.30 2017 2155 1.9E-63 T 13-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:3.90.1110.10 159 265 3.2E-22 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_02870 b1a4bcabf49de527d9bea22115ba216f 2893 Gene3D G3DSA:2.40.270.10 1025 1274 1.9E-76 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_05945 be7822350c22e001aded27f20cf395fe 599 Pfam PF00009 Elongation factor Tu GTP binding domain 2 195 4.0E-57 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_05945 be7822350c22e001aded27f20cf395fe 599 SUPERFAMILY SSF54980 396 510 8.15E-26 T 13-10-2018 IPR035647 EF-G domain III/V-like HCD_05945 be7822350c22e001aded27f20cf395fe 599 SUPERFAMILY SSF54980 302 385 1.94E-9 T 13-10-2018 IPR035647 EF-G domain III/V-like HCD_05945 be7822350c22e001aded27f20cf395fe 599 SUPERFAMILY SSF52540 2 206 2.24E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_05945 be7822350c22e001aded27f20cf395fe 599 Gene3D G3DSA:3.30.70.870 305 587 1.0E-126 T 13-10-2018 HCD_05945 be7822350c22e001aded27f20cf395fe 599 Pfam PF00679 Elongation factor G C-terminus 394 479 2.8E-21 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like HCD_05945 be7822350c22e001aded27f20cf395fe 599 Pfam PF03144 Elongation factor Tu domain 2 218 286 4.9E-10 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 HCD_05945 be7822350c22e001aded27f20cf395fe 599 SUPERFAMILY SSF50447 179 300 1.06E-30 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily HCD_05945 be7822350c22e001aded27f20cf395fe 599 PRINTS PR00315 GTP-binding elongation factor signature 122 131 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_05945 be7822350c22e001aded27f20cf395fe 599 PRINTS PR00315 GTP-binding elongation factor signature 86 97 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_05945 be7822350c22e001aded27f20cf395fe 599 PRINTS PR00315 GTP-binding elongation factor signature 6 19 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_05945 be7822350c22e001aded27f20cf395fe 599 PRINTS PR00315 GTP-binding elongation factor signature 50 58 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_05945 be7822350c22e001aded27f20cf395fe 599 PRINTS PR00315 GTP-binding elongation factor signature 70 80 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_05945 be7822350c22e001aded27f20cf395fe 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 135 1.4E-24 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 HCD_05945 be7822350c22e001aded27f20cf395fe 599 Gene3D G3DSA:2.40.30.10 199 298 8.1E-31 T 13-10-2018 HCD_05945 be7822350c22e001aded27f20cf395fe 599 Gene3D G3DSA:3.40.50.300 1 197 2.8E-68 T 13-10-2018 HCD_05945 be7822350c22e001aded27f20cf395fe 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 43 58 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site HCD_05945 be7822350c22e001aded27f20cf395fe 599 Gene3D G3DSA:3.30.70.240 387 479 1.0E-126 T 13-10-2018 HCD_05945 be7822350c22e001aded27f20cf395fe 599 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 4 596 4.5E-287 T 13-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 HCD_05945 be7822350c22e001aded27f20cf395fe 599 Gene3D G3DSA:2.40.50.250 480 596 1.0E-126 T 13-10-2018 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 Gene3D G3DSA:2.30.42.10 270 377 1.6E-26 T 13-10-2018 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 Gene3D G3DSA:2.30.42.10 380 472 2.3E-15 T 13-10-2018 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 Pfam PF13365 Trypsin-like peptidase domain 101 236 4.5E-34 T 13-10-2018 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 Gene3D G3DSA:2.40.10.120 43 269 9.3E-79 T 13-10-2018 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 SUPERFAMILY SSF50494 42 268 2.19E-62 T 13-10-2018 IPR009003 Peptidase S1, PA clan HCD_06060 826690133d03aa4f1703da894fee5eb4 476 SUPERFAMILY SSF50156 387 465 6.97E-13 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 44 465 2.9E-143 T 13-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 SUPERFAMILY SSF50156 246 368 7.36E-24 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 SMART SM00228 358 470 0.016 T 13-10-2018 IPR001478 PDZ domain GO:0005515 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 SMART SM00228 275 355 2.3E-13 T 13-10-2018 IPR001478 PDZ domain GO:0005515 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 PRINTS PR00834 HtrA/DegQ protease family signature 229 246 3.2E-52 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 PRINTS PR00834 HtrA/DegQ protease family signature 313 325 3.2E-52 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 PRINTS PR00834 HtrA/DegQ protease family signature 110 122 3.2E-52 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 PRINTS PR00834 HtrA/DegQ protease family signature 132 152 3.2E-52 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 PRINTS PR00834 HtrA/DegQ protease family signature 207 224 3.2E-52 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 PRINTS PR00834 HtrA/DegQ protease family signature 172 196 3.2E-52 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 Pfam PF13180 PDZ domain 406 455 6.2E-10 T 13-10-2018 IPR001478 PDZ domain GO:0005515 HCD_06060 826690133d03aa4f1703da894fee5eb4 476 Pfam PF13180 PDZ domain 275 364 3.5E-18 T 13-10-2018 IPR001478 PDZ domain GO:0005515 HCD_05260 e93a7149c95d8aed430b3019c502ff79 457 Pfam PF06969 HemN C-terminal domain 365 432 6.5E-12 T 13-10-2018 IPR010723 HemN, C-terminal HCD_05260 e93a7149c95d8aed430b3019c502ff79 457 PIRSF PIRSF000167 1 457 4.4E-174 T 13-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 HCD_05260 e93a7149c95d8aed430b3019c502ff79 457 Gene3D G3DSA:3.80.30.20 2 365 3.1E-109 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe HCD_05260 e93a7149c95d8aed430b3019c502ff79 457 SMART SM00729 52 274 2.3E-60 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 HCD_05260 e93a7149c95d8aed430b3019c502ff79 457 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 3 457 3.0E-230 T 13-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 HCD_05260 e93a7149c95d8aed430b3019c502ff79 457 Gene3D G3DSA:1.10.10.920 366 457 2.5E-28 T 13-10-2018 HCD_05260 e93a7149c95d8aed430b3019c502ff79 457 SUPERFAMILY SSF102114 8 446 1.57E-125 T 13-10-2018 HCD_05260 e93a7149c95d8aed430b3019c502ff79 457 Pfam PF04055 Radical SAM superfamily 57 231 6.9E-22 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 HCD_04700 b1e44193c39a097a4a511936bf720782 290 PIRSF PIRSF000904 2 290 7.2E-75 T 13-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 HCD_04700 b1e44193c39a097a4a511936bf720782 290 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 39 146 6.8E-21 T 13-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 HCD_04700 b1e44193c39a097a4a511936bf720782 290 Gene3D G3DSA:3.40.190.80 164 290 1.6E-30 T 13-10-2018 HCD_04700 b1e44193c39a097a4a511936bf720782 290 Gene3D G3DSA:3.30.540.10 6 161 6.5E-27 T 13-10-2018 HCD_04700 b1e44193c39a097a4a511936bf720782 290 PRINTS PR01958 Sedoheptulose-1,7-bisphosphatase family signature 199 219 2.1E-6 T 13-10-2018 IPR023079 Sedoheptulose-1,7-bisphosphatase GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 HCD_04700 b1e44193c39a097a4a511936bf720782 290 PRINTS PR01958 Sedoheptulose-1,7-bisphosphatase family signature 51 66 2.1E-6 T 13-10-2018 IPR023079 Sedoheptulose-1,7-bisphosphatase GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 HCD_04700 b1e44193c39a097a4a511936bf720782 290 PRINTS PR01958 Sedoheptulose-1,7-bisphosphatase family signature 120 138 2.1E-6 T 13-10-2018 IPR023079 Sedoheptulose-1,7-bisphosphatase GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 HCD_04700 b1e44193c39a097a4a511936bf720782 290 SUPERFAMILY SSF56655 7 287 7.79E-50 T 13-10-2018 HCD_01775 1c16c1700d3e34c902825901458dfcc4 174 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 6 145 2.1E-30 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 HCD_01775 1c16c1700d3e34c902825901458dfcc4 174 PIRSF PIRSF004682 1 173 1.1E-56 T 13-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 HCD_01775 1c16c1700d3e34c902825901458dfcc4 174 Pfam PF13242 HAD-hyrolase-like 103 149 6.8E-9 T 13-10-2018 HCD_01775 1c16c1700d3e34c902825901458dfcc4 174 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 146 5.8E-39 T 13-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 HCD_01775 1c16c1700d3e34c902825901458dfcc4 174 SUPERFAMILY SSF56784 4 173 5.38E-41 T 13-10-2018 IPR036412 HAD-like superfamily HCD_01775 1c16c1700d3e34c902825901458dfcc4 174 Gene3D G3DSA:3.40.50.1000 1 174 9.0E-51 T 13-10-2018 IPR023214 HAD superfamily HCD_01775 1c16c1700d3e34c902825901458dfcc4 174 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 5 173 4.0E-82 T 13-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 HCD_00155 012a2bbe9d0952cfb559fbb558c2d526 523 SUPERFAMILY SSF53649 224 483 1.79E-19 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 HCD_00155 012a2bbe9d0952cfb559fbb558c2d526 523 Pfam PF00884 Sulfatase 224 501 2.1E-41 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 HCD_00155 012a2bbe9d0952cfb559fbb558c2d526 523 Pfam PF08019 Domain of unknown function (DUF1705) 61 199 2.7E-29 T 13-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 HCD_00155 012a2bbe9d0952cfb559fbb558c2d526 523 Gene3D G3DSA:3.40.720.10 217 523 5.3E-70 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 HCD_05735 60fc15a21b0372cf317dcdf48a0dcbf4 748 SMART SM00463 671 748 3.1E-21 T 13-10-2018 IPR002625 Smr domain HCD_05735 60fc15a21b0372cf317dcdf48a0dcbf4 748 Gene3D G3DSA:3.30.1370.110 663 748 1.9E-22 T 13-10-2018 HCD_05735 60fc15a21b0372cf317dcdf48a0dcbf4 748 Pfam PF00488 MutS domain V 313 489 8.7E-16 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 HCD_05735 60fc15a21b0372cf317dcdf48a0dcbf4 748 SMART SM00533 3 299 2.1E-21 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 HCD_05735 60fc15a21b0372cf317dcdf48a0dcbf4 748 SUPERFAMILY SSF48334 71 273 4.97E-11 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily HCD_05735 60fc15a21b0372cf317dcdf48a0dcbf4 748 Pfam PF01713 Smr domain 674 748 1.7E-18 T 13-10-2018 IPR002625 Smr domain HCD_05735 60fc15a21b0372cf317dcdf48a0dcbf4 748 TIGRFAM TIGR01069 mutS2: MutS2 family protein 32 748 3.9E-247 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 HCD_05735 60fc15a21b0372cf317dcdf48a0dcbf4 748 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 5 748 18.406 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 HCD_05735 60fc15a21b0372cf317dcdf48a0dcbf4 748 SUPERFAMILY SSF160443 672 748 1.11E-9 T 13-10-2018 IPR036063 Smr domain superfamily HCD_05735 60fc15a21b0372cf317dcdf48a0dcbf4 748 PIRSF PIRSF005814 26 748 6.9E-97 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 HCD_05735 60fc15a21b0372cf317dcdf48a0dcbf4 748 SMART SM00534 308 492 3.9E-52 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 HCD_05735 60fc15a21b0372cf317dcdf48a0dcbf4 748 SUPERFAMILY SSF52540 277 495 3.97E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_05735 60fc15a21b0372cf317dcdf48a0dcbf4 748 Gene3D G3DSA:3.40.50.300 277 585 6.1E-39 T 13-10-2018 HCD_00420 238ff003ffc88299d42546eb1f5427d0 409 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 19 409 43.637 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00420 238ff003ffc88299d42546eb1f5427d0 409 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 137 409 2.4E-102 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00420 238ff003ffc88299d42546eb1f5427d0 409 SUPERFAMILY SSF56762 33 409 1.83E-118 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00420 238ff003ffc88299d42546eb1f5427d0 409 Gene3D G3DSA:1.10.645.20 22 409 7.4E-147 T 13-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00420 238ff003ffc88299d42546eb1f5427d0 409 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 22 409 8.9E-184 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_01350 1ceba0c5e243c2443e943d4f5aa34bcd 339 Gene3D G3DSA:3.20.20.140 1 337 1.1E-80 T 13-10-2018 HCD_01350 1ceba0c5e243c2443e943d4f5aa34bcd 339 Hamap MF_00219 Dihydroorotase [pyrC]. 1 336 39.416 T 13-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_01350 1ceba0c5e243c2443e943d4f5aa34bcd 339 PIRSF PIRSF001237 1 338 5.9E-109 T 13-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_01350 1ceba0c5e243c2443e943d4f5aa34bcd 339 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 2 336 4.5E-149 T 13-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_01350 1ceba0c5e243c2443e943d4f5aa34bcd 339 ProSitePatterns PS00483 Dihydroorotase signature 2. 237 248 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_01350 1ceba0c5e243c2443e943d4f5aa34bcd 339 SUPERFAMILY SSF51556 2 335 1.85E-90 T 13-10-2018 IPR032466 Metal-dependent hydrolase HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 SUPERFAMILY SSF52402 177 431 3.09E-53 T 13-10-2018 HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 196 510 2.4E-150 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 Pfam PF00958 GMP synthase C terminal domain 418 509 5.4E-44 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 2 188 1.1E-78 T 13-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 Gene3D G3DSA:3.30.300.10 391 510 4.1E-53 T 13-10-2018 HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 PRINTS PR00097 Anthranilate synthase component II signature 161 174 3.2E-7 T 13-10-2018 HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 PRINTS PR00097 Anthranilate synthase component II signature 73 84 3.2E-7 T 13-10-2018 HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 PRINTS PR00097 Anthranilate synthase component II signature 46 55 3.2E-7 T 13-10-2018 HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 SUPERFAMILY SSF54810 390 510 7.85E-50 T 13-10-2018 HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 SUPERFAMILY SSF52317 1 193 2.12E-52 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 Gene3D G3DSA:3.40.50.880 1 193 1.1E-52 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 Gene3D G3DSA:3.40.50.620 194 390 5.4E-78 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 Pfam PF00117 Glutamine amidotransferase class-I 4 182 1.3E-41 T 13-10-2018 IPR017926 Glutamine amidotransferase HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 Pfam PF02540 NAD synthase 210 282 4.8E-8 T 13-10-2018 IPR022310 NAD/GMP synthase HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 1 510 51.983 T 13-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 PRINTS PR00096 Glutamine amidotransferase superfamily signature 73 84 6.1E-8 T 13-10-2018 HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 PRINTS PR00096 Glutamine amidotransferase superfamily signature 46 55 6.1E-8 T 13-10-2018 HCD_02605 7309579ed9e5c04dd8a2bb0905362d07 510 PRINTS PR00096 Glutamine amidotransferase superfamily signature 161 174 6.1E-8 T 13-10-2018 HCD_06165 65910be2883a89416f08110e0c012535 90 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 88 1.2E-39 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_06165 65910be2883a89416f08110e0c012535 90 SUPERFAMILY SSF47060 3 88 1.35E-32 T 13-10-2018 IPR009068 S15/NS1, RNA-binding HCD_06165 65910be2883a89416f08110e0c012535 90 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_06165 65910be2883a89416f08110e0c012535 90 Gene3D G3DSA:1.10.287.10 2 89 7.0E-33 T 13-10-2018 HCD_06165 65910be2883a89416f08110e0c012535 90 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 5.0E-37 T 13-10-2018 HCD_06165 65910be2883a89416f08110e0c012535 90 Pfam PF00312 Ribosomal protein S15 8 87 2.7E-34 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_06165 65910be2883a89416f08110e0c012535 90 SMART SM01387 8 88 3.9E-47 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_06165 65910be2883a89416f08110e0c012535 90 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.027 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01820 e7812562e6f1e507141ad212d95b9e5f 117 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 114 5.3E-26 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 HCD_01820 e7812562e6f1e507141ad212d95b9e5f 117 PIRSF PIRSF004761 1 117 4.3E-31 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 HCD_01820 e7812562e6f1e507141ad212d95b9e5f 117 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 116 1.2E-35 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 HCD_01820 e7812562e6f1e507141ad212d95b9e5f 117 Gene3D G3DSA:3.30.2320.80 1 117 3.8E-38 T 13-10-2018 HCD_01820 e7812562e6f1e507141ad212d95b9e5f 117 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 115 18.185 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 HCD_01820 e7812562e6f1e507141ad212d95b9e5f 117 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 77 - T 13-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site HCD_07000 2f7278e4eddc17fe1d0db404da2c32f6 74 Gene3D G3DSA:3.90.940.10 6 74 1.5E-12 T 13-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 HCD_07000 2f7278e4eddc17fe1d0db404da2c32f6 74 SMART SM01409 12 67 1.8E-8 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 HCD_07000 2f7278e4eddc17fe1d0db404da2c32f6 74 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 13 65 1.9E-6 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_07000 2f7278e4eddc17fe1d0db404da2c32f6 74 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 6 68 12.255 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_07000 2f7278e4eddc17fe1d0db404da2c32f6 74 Pfam PF01192 RNA polymerase Rpb6 20 67 5.4E-8 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 HCD_07000 2f7278e4eddc17fe1d0db404da2c32f6 74 SUPERFAMILY SSF63562 12 68 7.98E-13 T 13-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 HCD_05175 5eaef6e4a5a6f820251ed80966fb4e87 267 Pfam PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 44 257 2.4E-63 T 13-10-2018 IPR019288 Predicted 3'-5' exonuclease, PolB-like HCD_05175 5eaef6e4a5a6f820251ed80966fb4e87 267 SUPERFAMILY SSF53098 2 237 5.81E-34 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily HCD_05175 5eaef6e4a5a6f820251ed80966fb4e87 267 Gene3D G3DSA:3.30.420.10 2 218 1.6E-22 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 HCD_06625 2a155f2fae5894ec20614716f39241cc 279 Pfam PF13860 FlgD Ig-like domain 145 221 1.3E-14 T 13-10-2018 IPR025965 FlgD Ig-like domain HCD_06625 2a155f2fae5894ec20614716f39241cc 279 Gene3D G3DSA:2.60.40.4070 140 235 2.4E-40 T 13-10-2018 HCD_06625 2a155f2fae5894ec20614716f39241cc 279 Pfam PF03963 Flagellar hook capping protein - N-terminal region 11 76 4.3E-15 T 13-10-2018 IPR005648 Flagellar hook capping protein HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 157 660 7.3E-73 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 Gene3D G3DSA:3.40.50.1000 367 633 1.2E-68 T 13-10-2018 IPR023214 HAD superfamily HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 SUPERFAMILY SSF55008 3 57 2.49E-8 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 ProSitePatterns PS01229 Hypothetical cof family signature 2. 581 603 - T 13-10-2018 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 388 394 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 SUPERFAMILY SSF81665 136 680 9.29E-14 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 604 616 1.5E-18 T 13-10-2018 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 235 249 1.5E-18 T 13-10-2018 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 386 400 1.5E-18 T 13-10-2018 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 581 600 1.5E-18 T 13-10-2018 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 SUPERFAMILY SSF81653 188 285 6.02E-20 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 Gene3D G3DSA:3.40.1110.10 397 512 1.2E-68 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 136 438 3.2E-98 T 13-10-2018 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 Pfam PF00122 E1-E2 ATPase 189 366 3.0E-42 T 13-10-2018 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 136 682 3.8E-174 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 SUPERFAMILY SSF56784 385 681 3.07E-51 T 13-10-2018 IPR036412 HAD-like superfamily HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 Gene3D G3DSA:3.30.70.100 2 60 2.0E-6 T 13-10-2018 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 Gene3D G3DSA:2.70.150.20 168 289 3.5E-28 T 13-10-2018 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 Pfam PF00702 haloacid dehalogenase-like hydrolase 383 595 6.3E-31 T 13-10-2018 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 Pfam PF00403 Heavy-metal-associated domain 4 55 5.0E-6 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 ProSitePatterns PS01047 Heavy-metal-associated domain. 6 36 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 PRINTS PR00941 Cadmium-transporting ATPase signature 170 190 1.6E-9 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 PRINTS PR00941 Cadmium-transporting ATPase signature 270 284 1.6E-9 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 PRINTS PR00941 Cadmium-transporting ATPase signature 251 267 1.6E-9 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 HCD_05590 13e81b018dcf8e12dcdc87b06a08a023 686 PRINTS PR00941 Cadmium-transporting ATPase signature 15 36 1.6E-9 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 HCD_03765 ea02d3e3934f48553146eb97a136dc1f 332 Pfam PF01497 Periplasmic binding protein 53 277 1.2E-20 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain HCD_03765 ea02d3e3934f48553146eb97a136dc1f 332 Gene3D G3DSA:3.40.50.1980 31 166 2.0E-53 T 13-10-2018 HCD_03765 ea02d3e3934f48553146eb97a136dc1f 332 Gene3D G3DSA:3.40.50.1980 167 332 1.6E-59 T 13-10-2018 HCD_03765 ea02d3e3934f48553146eb97a136dc1f 332 SUPERFAMILY SSF53807 36 322 1.49E-54 T 13-10-2018 HCD_02880 1c7001e15bee40279ce3a90860be777b 160 Gene3D G3DSA:3.30.70.1730 1 130 2.1E-33 T 13-10-2018 HCD_02880 1c7001e15bee40279ce3a90860be777b 160 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 157 22.46 T 13-10-2018 IPR022973 Ribosomal protein L10 HCD_02880 1c7001e15bee40279ce3a90860be777b 160 ProSitePatterns PS01109 Ribosomal protein L10 signature. 6 40 - T 13-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_02880 1c7001e15bee40279ce3a90860be777b 160 Pfam PF00466 Ribosomal protein L10 1 96 6.7E-20 T 13-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 HCD_02880 1c7001e15bee40279ce3a90860be777b 160 SUPERFAMILY SSF160369 1 154 2.09E-39 T 13-10-2018 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 758 1.1E-53 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 SMART SM01086 764 853 3.9E-26 T 13-10-2018 IPR019489 Clp ATPase, C-terminal HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 Gene3D G3DSA:3.40.50.300 550 763 4.1E-85 T 13-10-2018 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 SMART SM00382 196 341 9.0E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 SMART SM00382 597 743 1.5E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 201 316 1.5E-15 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 764 842 6.8E-21 T 13-10-2018 IPR019489 Clp ATPase, C-terminal HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 Gene3D G3DSA:1.10.1780.10 1 146 8.7E-26 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 291 303 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 Gene3D G3DSA:3.40.50.300 340 544 2.5E-59 T 13-10-2018 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 Gene3D G3DSA:1.10.8.60 764 856 1.0E-20 T 13-10-2018 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 SUPERFAMILY SSF52540 546 849 9.93E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 SUPERFAMILY SSF52540 157 544 1.59E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 6.7E-40 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 6.7E-40 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 6.7E-40 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 6.7E-40 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 SUPERFAMILY SSF81923 5 153 7.72E-28 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 Gene3D G3DSA:3.40.50.300 147 339 9.9E-72 T 13-10-2018 HCD_02395 4e5735182da85c25976eba40e9ce9db0 856 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 18 69 3.6E-10 T 13-10-2018 IPR004176 Clp, N-terminal HCD_03160 78b9096dc1146e759f64caf185b30f53 426 PRINTS PR00148 Enolase signature 37 51 3.9E-41 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 PRINTS PR00148 Enolase signature 161 174 3.9E-41 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 PRINTS PR00148 Enolase signature 335 349 3.9E-41 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 PRINTS PR00148 Enolase signature 312 323 3.9E-41 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 PRINTS PR00148 Enolase signature 107 123 3.9E-41 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 PRINTS PR00148 Enolase signature 364 381 3.9E-41 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 ProSitePatterns PS00164 Enolase signature. 335 348 - T 13-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 Gene3D G3DSA:3.20.20.120 128 426 5.1E-128 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily HCD_03160 78b9096dc1146e759f64caf185b30f53 426 PIRSF PIRSF001400 1 425 2.8E-185 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 424 1.9E-117 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 SMART SM01192 139 425 9.5E-195 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 Pfam PF03952 Enolase, N-terminal domain 4 134 2.5E-53 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 425 5.9E-208 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 SUPERFAMILY SSF54826 4 136 5.75E-51 T 13-10-2018 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 Gene3D G3DSA:3.30.390.10 1 127 2.2E-48 T 13-10-2018 IPR029017 Enolase-like, N-terminal HCD_03160 78b9096dc1146e759f64caf185b30f53 426 SUPERFAMILY SSF51604 138 415 2.4E-116 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily HCD_03160 78b9096dc1146e759f64caf185b30f53 426 SMART SM01193 4 134 1.4E-81 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_03160 78b9096dc1146e759f64caf185b30f53 426 Hamap MF_00318 Enolase [eno]. 2 412 43.147 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_00435 ec86d7c8342c7cd64af17bdc48feffd6 835 Gene3D G3DSA:2.20.25.90 232 289 3.3E-5 T 13-10-2018 HCD_00435 ec86d7c8342c7cd64af17bdc48feffd6 835 SUPERFAMILY SSF54292 1 72 5.42E-17 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 HCD_00435 ec86d7c8342c7cd64af17bdc48feffd6 835 SMART SM00926 232 289 7.1E-4 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00435 ec86d7c8342c7cd64af17bdc48feffd6 835 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 81 119 6.1E-15 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00435 ec86d7c8342c7cd64af17bdc48feffd6 835 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 74 1.7E-10 T 13-10-2018 HCD_00435 ec86d7c8342c7cd64af17bdc48feffd6 835 SUPERFAMILY SSF54862 73 226 8.79E-29 T 13-10-2018 HCD_00435 ec86d7c8342c7cd64af17bdc48feffd6 835 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 203 214 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_00435 ec86d7c8342c7cd64af17bdc48feffd6 835 Gene3D G3DSA:3.30.70.20 124 221 2.8E-9 T 13-10-2018 HCD_00435 ec86d7c8342c7cd64af17bdc48feffd6 835 SMART SM00929 81 121 4.1E-18 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00435 ec86d7c8342c7cd64af17bdc48feffd6 835 SUPERFAMILY SSF53706 230 661 3.66E-30 T 13-10-2018 HCD_00435 ec86d7c8342c7cd64af17bdc48feffd6 835 Gene3D G3DSA:3.10.20.740 1 121 2.3E-32 T 13-10-2018 HCD_05715 57bb73b0bbc56a28d723f498128400ed 357 Pfam PF04551 GcpE protein 8 347 4.1E-126 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 HCD_05715 57bb73b0bbc56a28d723f498128400ed 357 SUPERFAMILY SSF51604 64 133 5.83E-6 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily HCD_05715 57bb73b0bbc56a28d723f498128400ed 357 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 5 343 1.7E-113 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 HCD_05715 57bb73b0bbc56a28d723f498128400ed 357 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 3 351 33.256 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 HCD_05715 57bb73b0bbc56a28d723f498128400ed 357 Gene3D G3DSA:3.30.413.10 256 355 1.7E-31 T 13-10-2018 HCD_05715 57bb73b0bbc56a28d723f498128400ed 357 PIRSF PIRSF004640 1 357 3.4E-142 T 13-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 HCD_05715 57bb73b0bbc56a28d723f498128400ed 357 SUPERFAMILY SSF56014 260 327 2.75E-7 T 13-10-2018 HCD_05715 57bb73b0bbc56a28d723f498128400ed 357 Gene3D G3DSA:3.20.20.20 1 254 9.8E-97 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 HCD_03585 42beafb739de26b26652009b54e37c64 569 SUPERFAMILY SSF51338 1 178 1.03E-73 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 HCD_03585 42beafb739de26b26652009b54e37c64 569 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 3 569 1.5E-278 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03585 42beafb739de26b26652009b54e37c64 569 Gene3D G3DSA:3.20.20.140 131 563 3.2E-286 T 13-10-2018 HCD_03585 42beafb739de26b26652009b54e37c64 569 ProSitePatterns PS01120 Urease nickel ligands signature. 129 142 - T 13-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03585 42beafb739de26b26652009b54e37c64 569 Pfam PF01979 Amidohydrolase family 127 455 2.5E-79 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 HCD_03585 42beafb739de26b26652009b54e37c64 569 Hamap MF_01953 Urease subunit alpha [ureC]. 2 569 54.741 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03585 42beafb739de26b26652009b54e37c64 569 SUPERFAMILY SSF51338 411 480 2.93E-10 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 HCD_03585 42beafb739de26b26652009b54e37c64 569 Gene3D G3DSA:2.30.40.10 4 482 3.2E-286 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 HCD_03585 42beafb739de26b26652009b54e37c64 569 Pfam PF00449 Urease alpha-subunit, N-terminal domain 3 120 3.6E-53 T 13-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03585 42beafb739de26b26652009b54e37c64 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 336 352 8.6E-32 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03585 42beafb739de26b26652009b54e37c64 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 403 418 8.6E-32 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03585 42beafb739de26b26652009b54e37c64 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 297 314 8.6E-32 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03585 42beafb739de26b26652009b54e37c64 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 429 442 8.6E-32 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_03585 42beafb739de26b26652009b54e37c64 569 SUPERFAMILY SSF51556 132 569 2.42E-187 T 13-10-2018 IPR032466 Metal-dependent hydrolase HCD_03585 42beafb739de26b26652009b54e37c64 569 ProSitePatterns PS00145 Urease active site. 319 335 - T 13-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_06895 1b446fffde3dabb0bd64546a364e1cb2 126 Pfam PF02561 Flagellar protein FliS 7 120 2.5E-34 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 HCD_06895 1b446fffde3dabb0bd64546a364e1cb2 126 Gene3D G3DSA:1.20.120.340 1 126 1.2E-43 T 13-10-2018 HCD_06895 1b446fffde3dabb0bd64546a364e1cb2 126 SUPERFAMILY SSF101116 5 122 1.31E-34 T 13-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 HCD_06895 1b446fffde3dabb0bd64546a364e1cb2 126 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 124 7.2E-59 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 HCD_06895 1b446fffde3dabb0bd64546a364e1cb2 126 PIRSF PIRSF039090 1 125 1.2E-32 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 HCD_05305 9876ad1aff878e830b17023b0bf33c2b 353 Hamap MF_00992 Cyclic dehypoxanthine futalosine synthase [mqnC]. 1 347 52.804 T 13-10-2018 IPR022431 Cyclic dehypoxanthine futalosine synthase GO:0009234 KEGG: 00130+1.21.98.1|MetaCyc: PWY-7371|MetaCyc: PWY-7374 HCD_05305 9876ad1aff878e830b17023b0bf33c2b 353 Gene3D G3DSA:3.20.20.70 2 343 1.8E-55 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_05305 9876ad1aff878e830b17023b0bf33c2b 353 Pfam PF04055 Radical SAM superfamily 45 218 3.2E-16 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 HCD_05305 9876ad1aff878e830b17023b0bf33c2b 353 TIGRFAM TIGR00423 TIGR00423: radical SAM domain protein, CofH subfamily 38 344 4.8E-140 T 13-10-2018 IPR020050 FO synthase, subunit 2 GO:0016765 KEGG: 00680+2.5.1.77 HCD_05305 9876ad1aff878e830b17023b0bf33c2b 353 SUPERFAMILY SSF102114 2 308 3.27E-50 T 13-10-2018 HCD_05305 9876ad1aff878e830b17023b0bf33c2b 353 PIRSF PIRSF004762 1 353 4.1E-107 T 13-10-2018 HCD_05305 9876ad1aff878e830b17023b0bf33c2b 353 TIGRFAM TIGR03699 menaquin_MqnC: dehypoxanthine futalosine cyclase 2 344 3.1E-160 T 13-10-2018 IPR022431 Cyclic dehypoxanthine futalosine synthase GO:0009234 KEGG: 00130+1.21.98.1|MetaCyc: PWY-7371|MetaCyc: PWY-7374 HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 Pfam PF10415 Fumarase C C-terminus 406 458 1.2E-23 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 PRINTS PR00149 Fumarate lyase superfamily signature 269 296 1.3E-29 T 13-10-2018 IPR000362 Fumarate lyase family HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 PRINTS PR00149 Fumarate lyase superfamily signature 178 196 1.3E-29 T 13-10-2018 IPR000362 Fumarate lyase family HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 1.3E-29 T 13-10-2018 IPR000362 Fumarate lyase family HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 PRINTS PR00149 Fumarate lyase superfamily signature 315 331 1.3E-29 T 13-10-2018 IPR000362 Fumarate lyase family HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 Gene3D G3DSA:1.20.200.10 138 405 2.1E-111 T 13-10-2018 HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 PRINTS PR00145 Argininosuccinate lyase family signature 132 154 1.8E-5 T 13-10-2018 HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 PRINTS PR00145 Argininosuccinate lyase family signature 173 193 1.8E-5 T 13-10-2018 HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 PRINTS PR00145 Argininosuccinate lyase family signature 315 331 1.8E-5 T 13-10-2018 HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 SUPERFAMILY SSF48557 1 458 5.6E-149 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 Gene3D G3DSA:1.10.275.10 1 137 2.6E-57 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 Gene3D G3DSA:1.10.40.30 406 457 4.5E-23 T 13-10-2018 HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 2 468 1.6E-262 T 13-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 Pfam PF00206 Lyase 9 340 2.2E-98 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal HCD_06750 3250cb7b4f4141e1bf2203644a3c4e16 468 ProSitePatterns PS00163 Fumarate lyases signature. 315 324 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 HCD_03630 a3985288d95f55f34e21943353292e55 1183 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 767 778 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 HCD_03630 a3985288d95f55f34e21943353292e55 1183 PIRSF PIRSF000197 2 1174 0.0 T 13-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 HCD_03630 a3985288d95f55f34e21943353292e55 1183 Gene3D G3DSA:3.20.20.220 95 457 2.7E-83 T 13-10-2018 HCD_03630 a3985288d95f55f34e21943353292e55 1183 Pfam PF01619 Proline dehydrogenase 128 422 6.9E-63 T 13-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 HCD_03630 a3985288d95f55f34e21943353292e55 1183 Pfam PF00171 Aldehyde dehydrogenase family 523 963 7.6E-113 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 HCD_03630 a3985288d95f55f34e21943353292e55 1183 Gene3D G3DSA:3.40.605.10 524 958 1.1E-115 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 HCD_03630 a3985288d95f55f34e21943353292e55 1183 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 739 746 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 HCD_03630 a3985288d95f55f34e21943353292e55 1183 Gene3D G3DSA:3.40.309.10 743 934 1.1E-115 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 HCD_03630 a3985288d95f55f34e21943353292e55 1183 SUPERFAMILY SSF53720 474 964 6.15E-100 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 HCD_03630 a3985288d95f55f34e21943353292e55 1183 SUPERFAMILY SSF51730 125 463 2.67E-69 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 323 338 - T 13-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 SUPERFAMILY SSF47781 396 554 2.22E-43 T 13-10-2018 IPR010994 RuvA domain 2-like HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 Pfam PF12826 Helix-hairpin-helix motif 499 553 2.2E-6 T 13-10-2018 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 112 141 - T 13-10-2018 IPR018239 NAD-dependent DNA ligase, active site HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 578 648 4.3E-13 T 13-10-2018 IPR001357 BRCT domain HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 Hamap MF_01588 DNA ligase [ligA]. 3 650 44.013 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 SMART SM00292 577 650 1.6E-10 T 13-10-2018 IPR001357 BRCT domain HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 SMART SM00278 530 549 100.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 SMART SM00278 469 488 12.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 SMART SM00278 435 454 8.3 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 SUPERFAMILY SSF52113 577 648 1.05E-18 T 13-10-2018 IPR036420 BRCT domain superfamily HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 314 390 5.7E-28 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 4 309 1.1E-117 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 PIRSF PIRSF001604 2 650 3.7E-223 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 SMART SM00532 3 437 3.8E-231 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 Gene3D G3DSA:1.10.287.610 2 67 1.5E-17 T 13-10-2018 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 Gene3D G3DSA:3.30.470.90 68 309 1.8E-75 T 13-10-2018 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 Gene3D G3DSA:1.10.150.20 494 563 3.7E-10 T 13-10-2018 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 Gene3D G3DSA:2.40.50.140 311 397 4.9E-28 T 13-10-2018 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 SUPERFAMILY SSF50249 311 392 6.34E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 Gene3D G3DSA:1.10.150.20 421 493 1.3E-24 T 13-10-2018 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 Gene3D G3DSA:3.40.50.10190 576 650 1.7E-23 T 13-10-2018 IPR036420 BRCT domain superfamily HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 SUPERFAMILY SSF56091 3 309 2.24E-100 T 13-10-2018 HCD_05370 9ab7c26d9d62c9dc96e552c5653c5a89 650 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 13 646 1.8E-237 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 HCD_00295 919b626eaf192094fbe3dc76a8333ae6 233 ProSitePatterns PS00171 Triosephosphate isomerase active site. 156 166 - T 13-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_00295 919b626eaf192094fbe3dc76a8333ae6 233 Gene3D G3DSA:3.20.20.70 1 233 3.7E-80 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_00295 919b626eaf192094fbe3dc76a8333ae6 233 SUPERFAMILY SSF51351 3 232 1.07E-60 T 13-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_00295 919b626eaf192094fbe3dc76a8333ae6 233 Pfam PF00121 Triosephosphate isomerase 3 230 4.8E-65 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 Pfam PF03147 Ferredoxin-fold anticodon binding domain 680 770 7.8E-18 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 SMART SM00896 680 770 1.4E-19 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 769 2.6E-176 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 Gene3D G3DSA:3.30.70.380 681 770 1.2E-14 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 SMART SM00874 389 457 1.8E-18 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 Gene3D G3DSA:2.40.50.140 39 154 1.8E-57 T 13-10-2018 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 Gene3D G3DSA:3.30.56.10 388 460 4.3E-18 T 13-10-2018 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 Gene3D G3DSA:3.30.930.10 477 670 5.7E-37 T 13-10-2018 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 SUPERFAMILY SSF55681 453 669 6.96E-31 T 13-10-2018 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 Gene3D G3DSA:3.30.56.10 8 181 1.8E-57 T 13-10-2018 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 Pfam PF03484 tRNA synthetase B5 domain 393 456 3.0E-15 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 Pfam PF01588 Putative tRNA binding domain 44 137 2.7E-22 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 SUPERFAMILY SSF50249 42 193 1.09E-36 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 764 33.44 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 SUPERFAMILY SSF46955 390 460 2.93E-15 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily HCD_02645 08e07c59aa97d7be8a5666695a213f67 771 SUPERFAMILY SSF54991 676 770 7.72E-21 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 HCD_00380 120a5d4c9092ab895ddfea1ef4ccfdb5 236 Gene3D G3DSA:3.40.50.150 6 197 1.5E-18 T 13-10-2018 HCD_00380 120a5d4c9092ab895ddfea1ef4ccfdb5 236 SUPERFAMILY SSF53335 8 185 4.07E-21 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_00380 120a5d4c9092ab895ddfea1ef4ccfdb5 236 Pfam PF13847 Methyltransferase domain 38 141 8.2E-10 T 13-10-2018 IPR025714 Methyltransferase domain HCD_03545 23b17e6f8886ae8e47625eb0a952c880 675 SMART SM00283 451 674 2.0E-24 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_03545 23b17e6f8886ae8e47625eb0a952c880 675 Gene3D G3DSA:3.30.450.20 168 301 3.8E-5 T 13-10-2018 HCD_03545 23b17e6f8886ae8e47625eb0a952c880 675 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 506 664 2.1E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_03545 23b17e6f8886ae8e47625eb0a952c880 675 Gene3D G3DSA:1.10.287.950 387 670 1.1E-48 T 13-10-2018 HCD_03545 23b17e6f8886ae8e47625eb0a952c880 675 SUPERFAMILY SSF58104 362 670 1.31E-45 T 13-10-2018 HCD_03345 5350f0795b6c3dcdb2986ca789ef2b2f 302 Pfam PF00892 EamA-like transporter family 7 140 2.0E-22 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 HCD_03345 5350f0795b6c3dcdb2986ca789ef2b2f 302 Pfam PF00892 EamA-like transporter family 152 286 3.0E-10 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 HCD_03345 5350f0795b6c3dcdb2986ca789ef2b2f 302 SUPERFAMILY SSF103481 43 143 2.75E-13 T 13-10-2018 HCD_03345 5350f0795b6c3dcdb2986ca789ef2b2f 302 SUPERFAMILY SSF103481 194 289 2.88E-11 T 13-10-2018 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 2 398 9.5E-160 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 43 61 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 Gene3D G3DSA:2.40.37.10 12 371 2.8E-142 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 1 399 40.797 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 Gene3D G3DSA:3.20.20.10 20 261 2.8E-142 T 13-10-2018 IPR029066 PLP-binding barrel HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 267 356 2.7E-23 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 PRINTS PR01181 Diaminopimelate decarboxylase signature 284 302 5.2E-26 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 PRINTS PR01181 Diaminopimelate decarboxylase signature 366 388 5.2E-26 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 PRINTS PR01181 Diaminopimelate decarboxylase signature 61 78 5.2E-26 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 PRINTS PR01181 Diaminopimelate decarboxylase signature 150 159 5.2E-26 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 21 266 1.5E-60 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 SUPERFAMILY SSF50621 243 398 2.09E-50 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 356 369 1.9E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 256 275 1.9E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 43 61 1.9E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 176 189 1.9E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 63 75 1.9E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 HCD_07080 87348bb63f6b03ad2668eeef45acc013 405 SUPERFAMILY SSF51419 13 268 7.03E-76 T 13-10-2018 IPR029066 PLP-binding barrel HCD_04125 26dba830c5cf004305662a776cb1051b 1032 Gene3D G3DSA:1.20.1640.10 505 1022 4.5E-234 T 13-10-2018 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 Gene3D G3DSA:3.30.70.1320 134 325 4.5E-234 T 13-10-2018 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 SUPERFAMILY SSF82866 796 1030 4.71E-39 T 13-10-2018 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 Gene3D G3DSA:3.30.70.1430 42 805 4.5E-234 T 13-10-2018 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 Gene3D G3DSA:3.30.2090.10 710 797 4.5E-234 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains HCD_04125 26dba830c5cf004305662a776cb1051b 1032 Pfam PF00873 AcrB/AcrD/AcrF family 5 1025 6.5E-211 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 SUPERFAMILY SSF82693 137 323 2.35E-12 T 13-10-2018 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 SUPERFAMILY SSF82693 43 124 4.97E-16 T 13-10-2018 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 Gene3D G3DSA:3.30.2090.10 178 268 4.5E-234 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains HCD_04125 26dba830c5cf004305662a776cb1051b 1032 Gene3D G3DSA:3.30.70.1430 556 659 4.5E-234 T 13-10-2018 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1027 1.9E-278 T 13-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 SUPERFAMILY SSF82714 184 264 5.62E-12 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains HCD_04125 26dba830c5cf004305662a776cb1051b 1032 SUPERFAMILY SSF82714 711 794 1.16E-11 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains HCD_04125 26dba830c5cf004305662a776cb1051b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 9.2E-31 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 9.2E-31 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 9.2E-31 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 9.2E-31 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 9.2E-31 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 9.2E-31 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 9.2E-31 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 SUPERFAMILY SSF82866 291 494 4.97E-39 T 13-10-2018 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 Gene3D G3DSA:1.20.1640.10 12 504 4.5E-234 T 13-10-2018 HCD_04125 26dba830c5cf004305662a776cb1051b 1032 Gene3D G3DSA:3.30.70.1440 660 855 4.5E-234 T 13-10-2018 HCD_07700 27fb68869f868d24d0404df7bdd61dc3 130 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 6 119 3.8E-24 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 HCD_07700 27fb68869f868d24d0404df7bdd61dc3 130 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 124 19.141 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 HCD_07700 27fb68869f868d24d0404df7bdd61dc3 130 TIGRFAM TIGR00494 crcB: protein CrcB 7 123 6.8E-45 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 HCD_01635 d46651a3514a1679e72cf433e094e864 202 Pfam PF02169 LPP20 lipoprotein 100 177 7.7E-6 T 13-10-2018 IPR024952 Lipoprotein LPP20-like HCD_04035 22a00512c7be82f0e2b664d11de5d490 65 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 58 5.9E-19 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04035 22a00512c7be82f0e2b664d11de5d490 65 SUPERFAMILY SSF46561 1 59 2.09E-17 T 13-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04035 22a00512c7be82f0e2b664d11de5d490 65 Pfam PF00831 Ribosomal L29 protein 5 58 8.5E-18 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04035 22a00512c7be82f0e2b664d11de5d490 65 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 13-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04035 22a00512c7be82f0e2b664d11de5d490 65 Gene3D G3DSA:1.10.287.310 1 63 8.5E-20 T 13-10-2018 HCD_04035 22a00512c7be82f0e2b664d11de5d490 65 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 15.828 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04025 9bb65d62db458b66b4318372e18fc203 122 SMART SM01374 1 122 6.2E-83 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 HCD_04025 9bb65d62db458b66b4318372e18fc203 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.131 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 HCD_04025 9bb65d62db458b66b4318372e18fc203 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 9.1E-58 T 13-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 HCD_04025 9bb65d62db458b66b4318372e18fc203 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 13-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04025 9bb65d62db458b66b4318372e18fc203 122 SUPERFAMILY SSF50193 1 122 1.83E-51 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 HCD_04025 9bb65d62db458b66b4318372e18fc203 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 3.4E-54 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 HCD_04025 9bb65d62db458b66b4318372e18fc203 122 Gene3D G3DSA:2.40.150.20 1 122 2.6E-53 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 HCD_01330 ea84647c5796507067618d6055b83135 216 Gene3D G3DSA:1.10.1670.10 20 208 1.3E-69 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 HCD_01330 ea84647c5796507067618d6055b83135 216 TIGRFAM TIGR01083 nth: endonuclease III 10 199 7.2E-78 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 HCD_01330 ea84647c5796507067618d6055b83135 216 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 192 208 6.5E-5 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 HCD_01330 ea84647c5796507067618d6055b83135 216 SMART SM00478 44 190 4.7E-55 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 HCD_01330 ea84647c5796507067618d6055b83135 216 PIRSF PIRSF001435 5 215 1.6E-49 T 13-10-2018 HCD_01330 ea84647c5796507067618d6055b83135 216 Gene3D G3DSA:1.10.340.30 27 138 1.3E-69 T 13-10-2018 HCD_01330 ea84647c5796507067618d6055b83135 216 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 192 208 - T 13-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 HCD_01330 ea84647c5796507067618d6055b83135 216 Hamap MF_00942 Endonuclease III [nth]. 1 214 35.526 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 HCD_01330 ea84647c5796507067618d6055b83135 216 SMART SM00525 191 211 9.4E-6 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 HCD_01330 ea84647c5796507067618d6055b83135 216 Pfam PF00633 Helix-hairpin-helix motif 106 133 6.6E-8 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 HCD_01330 ea84647c5796507067618d6055b83135 216 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 40 174 1.8E-22 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 HCD_01330 ea84647c5796507067618d6055b83135 216 SUPERFAMILY SSF48150 9 211 7.07E-66 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 HCD_05725 52bf4224732864eddb28cc266f715c11 449 Pfam PF02875 Mur ligase family, glutamate ligase domain 303 391 3.6E-18 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 HCD_05725 52bf4224732864eddb28cc266f715c11 449 Pfam PF08245 Mur ligase middle domain 119 282 7.3E-6 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 HCD_05725 52bf4224732864eddb28cc266f715c11 449 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 16 438 3.5E-133 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_05725 52bf4224732864eddb28cc266f715c11 449 Gene3D G3DSA:3.90.190.20 299 448 2.9E-29 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 HCD_05725 52bf4224732864eddb28cc266f715c11 449 Pfam PF01225 Mur ligase family, catalytic domain 16 114 3.3E-21 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 HCD_05725 52bf4224732864eddb28cc266f715c11 449 SUPERFAMILY SSF53244 301 447 1.47E-22 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 HCD_05725 52bf4224732864eddb28cc266f715c11 449 SUPERFAMILY SSF53623 100 300 2.09E-33 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 HCD_05725 52bf4224732864eddb28cc266f715c11 449 SUPERFAMILY SSF51984 16 102 9.55E-24 T 13-10-2018 HCD_05725 52bf4224732864eddb28cc266f715c11 449 Gene3D G3DSA:3.40.1190.10 103 298 7.9E-29 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 HCD_05725 52bf4224732864eddb28cc266f715c11 449 Gene3D G3DSA:3.40.50.720 16 102 1.7E-29 T 13-10-2018 HCD_06410 996b660f95b3f5e343565976899e9499 208 SUPERFAMILY SSF159594 23 203 4.18E-6 T 13-10-2018 HCD_08335 252a21206eacda750b0d1430493c7e1d 570 SUPERFAMILY SSF52540 45 542 1.67E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_08335 252a21206eacda750b0d1430493c7e1d 570 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 316 554 4.2E-43 T 13-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 HCD_08335 252a21206eacda750b0d1430493c7e1d 570 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 68 192 3.0E-26 T 13-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 HCD_08335 252a21206eacda750b0d1430493c7e1d 570 Gene3D G3DSA:3.40.50.300 318 550 7.9E-36 T 13-10-2018 HCD_04920 4565445f6a98b1ce9f4c20381c3fa0f9 282 Gene3D G3DSA:3.20.20.70 1 279 1.8E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_04920 4565445f6a98b1ce9f4c20381c3fa0f9 282 TIGRFAM TIGR00433 bioB: biotin synthase 2 275 2.8E-84 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 HCD_04920 4565445f6a98b1ce9f4c20381c3fa0f9 282 PIRSF PIRSF001619 1 281 3.4E-78 T 13-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 HCD_04920 4565445f6a98b1ce9f4c20381c3fa0f9 282 SUPERFAMILY SSF102114 3 274 1.83E-53 T 13-10-2018 HCD_04920 4565445f6a98b1ce9f4c20381c3fa0f9 282 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 184 275 6.4E-9 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 HCD_04920 4565445f6a98b1ce9f4c20381c3fa0f9 282 SMART SM00876 184 277 1.6E-18 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 HCD_04920 4565445f6a98b1ce9f4c20381c3fa0f9 282 Hamap MF_01694 Biotin synthase [bioB]. 2 278 32.826 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 HCD_04920 4565445f6a98b1ce9f4c20381c3fa0f9 282 Pfam PF04055 Radical SAM superfamily 15 173 4.2E-16 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 HCD_04920 4565445f6a98b1ce9f4c20381c3fa0f9 282 SMART SM00729 7 215 2.0E-28 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 HCD_08460 a4308756c5fb57f277d05cd5818c2bc8 332 Gene3D G3DSA:3.40.367.20 107 313 8.1E-99 T 13-10-2018 HCD_08460 a4308756c5fb57f277d05cd5818c2bc8 332 TIGRFAM TIGR00749 glk: glucokinase 10 324 7.3E-158 T 13-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 HCD_08460 a4308756c5fb57f277d05cd5818c2bc8 332 Hamap MF_00524 Glucokinase [glk]. 8 330 34.047 T 13-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 HCD_08460 a4308756c5fb57f277d05cd5818c2bc8 332 SUPERFAMILY SSF53067 12 326 1.18E-50 T 13-10-2018 HCD_08460 a4308756c5fb57f277d05cd5818c2bc8 332 Pfam PF02685 Glucokinase 10 328 6.0E-113 T 13-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 HCD_08460 a4308756c5fb57f277d05cd5818c2bc8 332 Gene3D G3DSA:3.30.420.40 10 323 8.1E-99 T 13-10-2018 HCD_02800 897fddfc03c0ef7f63a218dc26c7a5f9 442 Pfam PF13393 Histidyl-tRNA synthetase 9 329 4.7E-49 T 13-10-2018 HCD_02800 897fddfc03c0ef7f63a218dc26c7a5f9 442 Gene3D G3DSA:3.30.930.10 1 342 8.7E-108 T 13-10-2018 HCD_02800 897fddfc03c0ef7f63a218dc26c7a5f9 442 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 2 431 27.686 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 HCD_02800 897fddfc03c0ef7f63a218dc26c7a5f9 442 PIRSF PIRSF001549 1 437 5.2E-142 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 HCD_02800 897fddfc03c0ef7f63a218dc26c7a5f9 442 SUPERFAMILY SSF55681 5 340 2.49E-79 T 13-10-2018 HCD_02800 897fddfc03c0ef7f63a218dc26c7a5f9 442 Gene3D G3DSA:3.40.50.800 343 425 1.2E-18 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily HCD_02800 897fddfc03c0ef7f63a218dc26c7a5f9 442 Pfam PF03129 Anticodon binding domain 347 432 3.0E-14 T 13-10-2018 IPR004154 Anticodon-binding HCD_02800 897fddfc03c0ef7f63a218dc26c7a5f9 442 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 423 3.9E-127 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 HCD_02800 897fddfc03c0ef7f63a218dc26c7a5f9 442 SUPERFAMILY SSF52954 346 424 1.19E-17 T 13-10-2018 HCD_05355 53d0a5d5675bfe8f55f2477ff36185d8 203 PRINTS PR00094 Adenylate kinase signature 134 149 4.9E-19 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 HCD_05355 53d0a5d5675bfe8f55f2477ff36185d8 203 PRINTS PR00094 Adenylate kinase signature 6 19 4.9E-19 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 HCD_05355 53d0a5d5675bfe8f55f2477ff36185d8 203 PRINTS PR00094 Adenylate kinase signature 36 50 4.9E-19 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 HCD_05355 53d0a5d5675bfe8f55f2477ff36185d8 203 PRINTS PR00094 Adenylate kinase signature 84 100 4.9E-19 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 HCD_05355 53d0a5d5675bfe8f55f2477ff36185d8 203 Pfam PF00406 Adenylate kinase 7 164 2.8E-33 T 13-10-2018 HCD_05355 53d0a5d5675bfe8f55f2477ff36185d8 203 Hamap MF_00235 Adenylate kinase [adk]. 3 187 31.786 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 HCD_05355 53d0a5d5675bfe8f55f2477ff36185d8 203 ProSitePatterns PS00113 Adenylate kinase signature. 84 95 - T 13-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 HCD_05355 53d0a5d5675bfe8f55f2477ff36185d8 203 Gene3D G3DSA:3.40.50.300 2 188 1.7E-44 T 13-10-2018 HCD_05355 53d0a5d5675bfe8f55f2477ff36185d8 203 SUPERFAMILY SSF52540 4 188 1.55E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_05710 62aecdae38034819f9450914f2a99619 401 Hamap MF_02122 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 18 401 42.541 T 13-10-2018 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family GO:0008666 KEGG: 00300+2.3.1.117 HCD_05710 62aecdae38034819f9450914f2a99619 401 Gene3D G3DSA:2.160.10.10 219 401 1.6E-63 T 13-10-2018 HCD_05710 62aecdae38034819f9450914f2a99619 401 SUPERFAMILY SSF51161 131 338 1.52E-29 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily HCD_05710 62aecdae38034819f9450914f2a99619 401 Pfam PF14790 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 174 1.9E-69 T 13-10-2018 HCD_05710 62aecdae38034819f9450914f2a99619 401 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 301 333 4.8E-14 T 13-10-2018 IPR001451 Hexapeptide repeat HCD_05710 62aecdae38034819f9450914f2a99619 401 Gene3D G3DSA:3.30.70.2010 1 175 6.0E-61 T 13-10-2018 HCD_05710 62aecdae38034819f9450914f2a99619 401 Gene3D G3DSA:3.30.60.70 176 216 2.9E-24 T 13-10-2018 IPR038361 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain superfamily KEGG: 00300+2.3.1.117 HCD_05710 62aecdae38034819f9450914f2a99619 401 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 176 216 2.1E-13 T 13-10-2018 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117 HCD_02330 2e6b51a1eaafd2f0f99ed77425115a9f 83 SUPERFAMILY SSF54862 6 75 2.21E-19 T 13-10-2018 HCD_02330 2e6b51a1eaafd2f0f99ed77425115a9f 83 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_02330 2e6b51a1eaafd2f0f99ed77425115a9f 83 Pfam PF13187 4Fe-4S dicluster domain 8 59 1.1E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_02330 2e6b51a1eaafd2f0f99ed77425115a9f 83 Gene3D G3DSA:3.30.70.20 2 81 3.1E-29 T 13-10-2018 HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 Gene3D G3DSA:1.10.290.10 255 383 2.4E-89 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 Gene3D G3DSA:1.10.460.10 135 559 2.4E-89 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 SMART SM00493 3 97 3.1E-22 T 13-10-2018 IPR006171 TOPRIM domain HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 160 178 5.2E-25 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 369 385 5.2E-25 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 478 492 5.2E-25 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 71 84 5.2E-25 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 289 298 5.2E-25 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 Gene3D G3DSA:2.70.20.10 182 461 2.4E-89 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 Pfam PF01131 DNA topoisomerase 126 556 1.3E-81 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 SMART SM00437 247 517 9.7E-54 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 SUPERFAMILY SSF56712 5 568 3.27E-116 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 Gene3D G3DSA:3.40.50.140 1 125 4.9E-27 T 13-10-2018 HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 SMART SM00436 98 187 5.8E-25 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 HCD_07620 2f450dd3c90a6bd12ef46e5486ae4496 640 Pfam PF01751 Toprim domain 5 107 4.2E-20 T 13-10-2018 IPR006171 TOPRIM domain HCD_04325 9db63ab1d1d3639fecada9c0fe9c13db 218 Pfam PF13144 Chaperone for flagella basal body P-ring formation 22 217 1.3E-37 T 13-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal HCD_04325 9db63ab1d1d3639fecada9c0fe9c13db 218 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 86 217 3.0E-26 T 13-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal HCD_04325 9db63ab1d1d3639fecada9c0fe9c13db 218 Gene3D G3DSA:2.30.30.760 161 218 2.8E-10 T 13-10-2018 HCD_06990 9caa66c101be417513de6b16948f6f87 402 SMART SM00363 342 402 1.3E-5 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_06990 9caa66c101be417513de6b16948f6f87 402 Gene3D G3DSA:3.40.50.620 7 223 6.4E-67 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_06990 9caa66c101be417513de6b16948f6f87 402 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 11 401 1.5E-132 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 HCD_06990 9caa66c101be417513de6b16948f6f87 402 Gene3D G3DSA:1.10.240.10 228 329 4.7E-19 T 13-10-2018 HCD_06990 9caa66c101be417513de6b16948f6f87 402 SUPERFAMILY SSF55174 314 400 1.57E-14 T 13-10-2018 HCD_06990 9caa66c101be417513de6b16948f6f87 402 Gene3D G3DSA:3.10.290.10 330 401 1.1E-11 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 HCD_06990 9caa66c101be417513de6b16948f6f87 402 Pfam PF00579 tRNA synthetases class I (W and Y) 35 323 1.0E-80 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_06990 9caa66c101be417513de6b16948f6f87 402 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 217 229 5.0E-23 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 HCD_06990 9caa66c101be417513de6b16948f6f87 402 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 183 205 5.0E-23 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 HCD_06990 9caa66c101be417513de6b16948f6f87 402 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 51 73 5.0E-23 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 HCD_06990 9caa66c101be417513de6b16948f6f87 402 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 166 181 5.0E-23 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 HCD_06990 9caa66c101be417513de6b16948f6f87 402 SUPERFAMILY SSF52374 13 323 1.71E-85 T 13-10-2018 HCD_06990 9caa66c101be417513de6b16948f6f87 402 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 47 57 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_06990 9caa66c101be417513de6b16948f6f87 402 Pfam PF01479 S4 domain 345 381 5.4E-9 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_06990 9caa66c101be417513de6b16948f6f87 402 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 3 401 44.368 T 13-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 HCD_08020 29f90aeef18efb71623da5f6fe7d2fc8 440 PRINTS PR00149 Fumarate lyase superfamily signature 261 277 2.0E-21 T 13-10-2018 IPR000362 Fumarate lyase family HCD_08020 29f90aeef18efb71623da5f6fe7d2fc8 440 PRINTS PR00149 Fumarate lyase superfamily signature 88 106 2.0E-21 T 13-10-2018 IPR000362 Fumarate lyase family HCD_08020 29f90aeef18efb71623da5f6fe7d2fc8 440 PRINTS PR00149 Fumarate lyase superfamily signature 216 243 2.0E-21 T 13-10-2018 IPR000362 Fumarate lyase family HCD_08020 29f90aeef18efb71623da5f6fe7d2fc8 440 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 2.0E-21 T 13-10-2018 IPR000362 Fumarate lyase family HCD_08020 29f90aeef18efb71623da5f6fe7d2fc8 440 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 439 3.3E-175 T 13-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 HCD_08020 29f90aeef18efb71623da5f6fe7d2fc8 440 Pfam PF10397 Adenylosuccinate lyase C-terminus 350 438 1.7E-25 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 HCD_08020 29f90aeef18efb71623da5f6fe7d2fc8 440 ProSitePatterns PS00163 Fumarate lyases signature. 261 270 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 HCD_08020 29f90aeef18efb71623da5f6fe7d2fc8 440 SMART SM00998 349 439 5.6E-32 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 HCD_08020 29f90aeef18efb71623da5f6fe7d2fc8 440 Pfam PF00206 Lyase 7 284 3.6E-47 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal HCD_08020 29f90aeef18efb71623da5f6fe7d2fc8 440 Gene3D G3DSA:1.20.200.10 93 347 2.3E-83 T 13-10-2018 HCD_08020 29f90aeef18efb71623da5f6fe7d2fc8 440 Gene3D G3DSA:1.10.275.10 1 92 6.1E-31 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal HCD_08020 29f90aeef18efb71623da5f6fe7d2fc8 440 SUPERFAMILY SSF48557 3 439 2.36E-120 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 HCD_08020 29f90aeef18efb71623da5f6fe7d2fc8 440 Gene3D G3DSA:1.10.40.30 349 438 3.5E-27 T 13-10-2018 HCD_00190 f836ca6cf7e8aae570b32dd379316a5d 93 Pfam PF04956 TrbC/VIRB2 family 7 89 2.9E-9 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 HCD_03220 24332351ebd3540d94ccad799807700f 482 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 23 474 3.0E-159 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 HCD_03220 24332351ebd3540d94ccad799807700f 482 Pfam PF00939 Sodium:sulfate symporter transmembrane region 8 477 2.8E-136 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 HCD_03220 24332351ebd3540d94ccad799807700f 482 PIRSF PIRSF002457 1 480 3.7E-128 T 13-10-2018 IPR030676 Citrate carrier CitT-related HCD_00775 91d8be507058867321d21ec8b311f85a 76 Gene3D G3DSA:3.30.70.1680 1 62 2.3E-22 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 HCD_00775 91d8be507058867321d21ec8b311f85a 76 SUPERFAMILY SSF117130 1 55 1.16E-16 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 HCD_00775 91d8be507058867321d21ec8b311f85a 76 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 73 16.322 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 HCD_00775 91d8be507058867321d21ec8b311f85a 76 Pfam PF02599 Global regulator protein family 1 51 5.0E-20 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 HCD_00775 91d8be507058867321d21ec8b311f85a 76 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 70 4.9E-31 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 HCD_00775 91d8be507058867321d21ec8b311f85a 76 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 49 2.0E-11 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 HCD_02095 9a2fb39a2fbb0fbfc56c4ef65a8394f0 515 Gene3D G3DSA:3.10.310.30 289 406 7.1E-30 T 13-10-2018 HCD_02095 9a2fb39a2fbb0fbfc56c4ef65a8394f0 515 SUPERFAMILY SSF64182 22 402 1.36E-94 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily HCD_02095 9a2fb39a2fbb0fbfc56c4ef65a8394f0 515 Pfam PF01368 DHH family 48 173 8.6E-10 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 HCD_02095 9a2fb39a2fbb0fbfc56c4ef65a8394f0 515 Gene3D G3DSA:3.90.1640.30 23 288 3.4E-71 T 13-10-2018 HCD_02095 9a2fb39a2fbb0fbfc56c4ef65a8394f0 515 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 22 509 1.1E-155 T 13-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 HCD_02095 9a2fb39a2fbb0fbfc56c4ef65a8394f0 515 Pfam PF02272 DHHA1 domain 286 401 6.7E-18 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 133 153 - T 13-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 1.2E-31 T 13-10-2018 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 230 246 1.2E-31 T 13-10-2018 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 145 163 1.2E-31 T 13-10-2018 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.2E-31 T 13-10-2018 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 1.2E-31 T 13-10-2018 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 2.5E-57 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 126 138 2.5E-57 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 232 253 2.5E-57 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 141 165 2.5E-57 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 37 52 2.5E-57 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 271 289 2.5E-57 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 104 112 2.5E-57 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 193 209 2.5E-57 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 Gene3D G3DSA:3.50.50.60 3 303 1.6E-129 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 Gene3D G3DSA:3.50.50.60 115 238 1.6E-129 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 3 308 1.3E-118 T 13-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 SUPERFAMILY SSF51905 1 308 1.68E-47 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_05745 12b66c6f94572fbcc3c5d1b79b01948d 311 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 297 5.0E-53 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 HCD_06960 95dcd0c2bf98b86630411c632b48f1a1 229 Pfam PF02621 Menaquinone biosynthesis 108 216 7.5E-11 T 13-10-2018 IPR003773 Menaquinone biosynthesis enzyme HCD_06960 95dcd0c2bf98b86630411c632b48f1a1 229 Pfam PF02621 Menaquinone biosynthesis 2 103 1.3E-6 T 13-10-2018 IPR003773 Menaquinone biosynthesis enzyme HCD_06960 95dcd0c2bf98b86630411c632b48f1a1 229 Gene3D G3DSA:3.40.190.10 115 225 1.0E-8 T 13-10-2018 HCD_06960 95dcd0c2bf98b86630411c632b48f1a1 229 Gene3D G3DSA:3.40.190.10 1 110 2.1E-19 T 13-10-2018 HCD_06960 95dcd0c2bf98b86630411c632b48f1a1 229 Hamap MF_00995 Chorismate dehydratase [mqnA]. 2 224 23.108 T 13-10-2018 IPR030868 Chorismate dehydratase GO:0009234|GO:0016829 KEGG: 00130+4.2.1.151|MetaCyc: PWY-7371|MetaCyc: PWY-7374 HCD_06960 95dcd0c2bf98b86630411c632b48f1a1 229 SUPERFAMILY SSF53850 1 223 4.07E-47 T 13-10-2018 HCD_07275 48ae360fec53dd0bc3697c9c47654b98 606 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 6 415 2.9E-91 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 HCD_07275 48ae360fec53dd0bc3697c9c47654b98 606 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 547 603 1.7E-13 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain HCD_07275 48ae360fec53dd0bc3697c9c47654b98 606 Pfam PF00460 Flagella basal body rod protein 8 33 2.1E-4 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 HCD_07275 48ae360fec53dd0bc3697c9c47654b98 606 PRINTS PR01005 Flagellar hook-associated protein signature 127 147 1.0E-8 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 HCD_07275 48ae360fec53dd0bc3697c9c47654b98 606 PRINTS PR01005 Flagellar hook-associated protein signature 160 184 1.0E-8 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 HCD_07275 48ae360fec53dd0bc3697c9c47654b98 606 PRINTS PR01005 Flagellar hook-associated protein signature 52 74 1.0E-8 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 HCD_07275 48ae360fec53dd0bc3697c9c47654b98 606 PRINTS PR01005 Flagellar hook-associated protein signature 14 37 1.0E-8 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 HCD_03275 c5ad537b90601fef2fc10be47e57afa2 248 SMART SM00671 106 141 5.2E-7 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03275 c5ad537b90601fef2fc10be47e57afa2 248 SUPERFAMILY SSF81901 57 231 1.44E-12 T 13-10-2018 HCD_03275 c5ad537b90601fef2fc10be47e57afa2 248 Pfam PF08238 Sel1 repeat 108 138 6.3E-5 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03275 c5ad537b90601fef2fc10be47e57afa2 248 Pfam PF08238 Sel1 repeat 213 227 0.78 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03275 c5ad537b90601fef2fc10be47e57afa2 248 Pfam PF08238 Sel1 repeat 59 69 220.0 T 13-10-2018 IPR006597 Sel1-like repeat HCD_03275 c5ad537b90601fef2fc10be47e57afa2 248 Gene3D G3DSA:1.25.40.10 28 244 1.8E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_06500 e589bdf3c049bb1aa43dfbc8e2ea861b 243 SUPERFAMILY SSF102705 3 227 6.54E-54 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily HCD_06500 e589bdf3c049bb1aa43dfbc8e2ea861b 243 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 5 241 1.7E-58 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 HCD_06500 e589bdf3c049bb1aa43dfbc8e2ea861b 243 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 225 7.6E-54 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 HCD_06500 e589bdf3c049bb1aa43dfbc8e2ea861b 243 Gene3D G3DSA:3.40.1390.30 99 208 1.7E-51 T 13-10-2018 HCD_06500 e589bdf3c049bb1aa43dfbc8e2ea861b 243 Gene3D G3DSA:3.40.1390.30 6 220 1.7E-51 T 13-10-2018 HCD_05660 d94a794a79ed7450c7652ceef96c34ac 408 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 258 291 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 HCD_05660 d94a794a79ed7450c7652ceef96c34ac 408 Gene3D G3DSA:3.40.980.10 179 335 1.7E-82 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily HCD_05660 d94a794a79ed7450c7652ceef96c34ac 408 Gene3D G3DSA:2.40.340.10 336 368 1.7E-82 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_05660 d94a794a79ed7450c7652ceef96c34ac 408 SMART SM00852 184 326 4.2E-30 T 13-10-2018 IPR001453 MoaB/Mog domain HCD_05660 d94a794a79ed7450c7652ceef96c34ac 408 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 180 319 4.2E-25 T 13-10-2018 IPR001453 MoaB/Mog domain HCD_05660 d94a794a79ed7450c7652ceef96c34ac 408 SUPERFAMILY SSF53218 179 329 4.32E-31 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily HCD_05660 d94a794a79ed7450c7652ceef96c34ac 408 Gene3D G3DSA:2.170.190.11 48 145 1.7E-82 T 13-10-2018 HCD_05660 d94a794a79ed7450c7652ceef96c34ac 408 Pfam PF03453 MoeA N-terminal region (domain I and II) 5 169 1.6E-24 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_05660 d94a794a79ed7450c7652ceef96c34ac 408 Gene3D G3DSA:3.90.105.10 24 178 1.7E-82 T 13-10-2018 HCD_05660 d94a794a79ed7450c7652ceef96c34ac 408 Pfam PF00994 Probable molybdopterin binding domain 184 323 3.0E-24 T 13-10-2018 IPR001453 MoaB/Mog domain HCD_05660 d94a794a79ed7450c7652ceef96c34ac 408 SUPERFAMILY SSF63882 3 180 2.35E-31 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_03700 9a6c01867380818f8a6f9c108908bc29 90 Gene3D G3DSA:3.40.1690.10 4 87 5.5E-22 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal HCD_03700 9a6c01867380818f8a6f9c108908bc29 90 Pfam PF01312 FlhB HrpN YscU SpaS Family 2 78 2.0E-17 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 HCD_03700 9a6c01867380818f8a6f9c108908bc29 90 TIGRFAM TIGR00789 flhB_rel: FlhB domain protein 4 85 6.5E-38 T 13-10-2018 IPR004683 Type III secretion system substrate exporter FlhB-like HCD_03700 9a6c01867380818f8a6f9c108908bc29 90 SUPERFAMILY SSF160544 2 83 1.44E-22 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal HCD_07185 805cf1def59a944af325df466a3dad8b 548 Gene3D G3DSA:3.40.190.10 227 533 4.9E-160 T 13-10-2018 HCD_07185 805cf1def59a944af325df466a3dad8b 548 SUPERFAMILY SSF53850 46 546 7.24E-143 T 13-10-2018 HCD_07185 805cf1def59a944af325df466a3dad8b 548 Gene3D G3DSA:3.90.76.10 61 226 4.9E-160 T 13-10-2018 HCD_07185 805cf1def59a944af325df466a3dad8b 548 Gene3D G3DSA:3.10.105.10 308 522 4.9E-160 T 13-10-2018 HCD_07185 805cf1def59a944af325df466a3dad8b 548 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 89 461 7.5E-103 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain HCD_07185 805cf1def59a944af325df466a3dad8b 548 PIRSF PIRSF002741 3 548 3.8E-123 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 HCD_04095 f70aaadaad8a45a33586e1640a998d7b 197 SUPERFAMILY SSF53098 2 185 8.04E-51 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily HCD_04095 f70aaadaad8a45a33586e1640a998d7b 197 Pfam PF01351 Ribonuclease HII 3 186 6.9E-49 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain HCD_04095 f70aaadaad8a45a33586e1640a998d7b 197 Gene3D G3DSA:3.30.420.10 1 196 9.1E-60 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 HCD_04095 f70aaadaad8a45a33586e1640a998d7b 197 Hamap MF_00052_B Ribonuclease HII [rnhB]. 1 188 33.712 T 13-10-2018 IPR022898 Ribonuclease HII GO:0004523 HCD_06240 4fcf8f558d4e61676c1c78b3ae77d6c5 371 SMART SM00388 160 224 1.3E-8 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 HCD_06240 4fcf8f558d4e61676c1c78b3ae77d6c5 371 SUPERFAMILY SSF47384 148 220 2.94E-8 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 HCD_06240 4fcf8f558d4e61676c1c78b3ae77d6c5 371 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 272 366 1.4E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase HCD_06240 4fcf8f558d4e61676c1c78b3ae77d6c5 371 PRINTS PR00344 Bacterial sensor protein C-terminal signature 306 320 3.3E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 HCD_06240 4fcf8f558d4e61676c1c78b3ae77d6c5 371 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 351 3.3E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 HCD_06240 4fcf8f558d4e61676c1c78b3ae77d6c5 371 PRINTS PR00344 Bacterial sensor protein C-terminal signature 322 332 3.3E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 HCD_06240 4fcf8f558d4e61676c1c78b3ae77d6c5 371 Gene3D G3DSA:1.10.287.130 151 217 2.4E-11 T 13-10-2018 HCD_06240 4fcf8f558d4e61676c1c78b3ae77d6c5 371 SMART SM00387 264 371 1.0E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase HCD_06240 4fcf8f558d4e61676c1c78b3ae77d6c5 371 Pfam PF00512 His Kinase A (phospho-acceptor) domain 160 220 6.4E-9 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 HCD_06240 4fcf8f558d4e61676c1c78b3ae77d6c5 371 SUPERFAMILY SSF55874 228 365 9.82E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily HCD_06240 4fcf8f558d4e61676c1c78b3ae77d6c5 371 Gene3D G3DSA:3.30.565.10 218 368 2.8E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily HCD_03725 5269b4f3a3c2ff60fe8ee71adc8a56e7 164 Pfam PF08282 haloacid dehalogenase-like hydrolase 77 135 6.8E-11 T 13-10-2018 HCD_03725 5269b4f3a3c2ff60fe8ee71adc8a56e7 164 Gene3D G3DSA:3.40.50.1000 1 161 4.2E-47 T 13-10-2018 IPR023214 HAD superfamily HCD_03725 5269b4f3a3c2ff60fe8ee71adc8a56e7 164 SUPERFAMILY SSF56784 1 154 6.46E-39 T 13-10-2018 IPR036412 HAD-like superfamily HCD_03725 5269b4f3a3c2ff60fe8ee71adc8a56e7 164 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 2 153 7.0E-48 T 13-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 HCD_03725 5269b4f3a3c2ff60fe8ee71adc8a56e7 164 PIRSF PIRSF006118 1 164 2.3E-63 T 13-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 HCD_03725 5269b4f3a3c2ff60fe8ee71adc8a56e7 164 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 3 117 5.3E-13 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 HCD_03600 c68b5e5ad947f070ba44e6ff7552d91c 244 Gene3D G3DSA:1.10.4190.10 15 223 3.5E-71 T 13-10-2018 IPR038277 UreF domain superfamily HCD_03600 c68b5e5ad947f070ba44e6ff7552d91c 244 Pfam PF01730 UreF 53 202 8.8E-28 T 13-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 HCD_03600 c68b5e5ad947f070ba44e6ff7552d91c 244 Hamap MF_01385 Urease accessory protein UreF [ureF]. 21 244 23.947 T 13-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 HCD_03600 c68b5e5ad947f070ba44e6ff7552d91c 244 PIRSF PIRSF009467 18 244 4.1E-69 T 13-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 HCD_03720 2eff68235b5753631a41c994777ef420 320 Gene3D G3DSA:2.40.40.10 122 213 4.4E-34 T 13-10-2018 IPR036908 RlpA-like domain superfamily HCD_03720 2eff68235b5753631a41c994777ef420 320 Pfam PF03330 Lytic transglycolase 122 209 1.6E-25 T 13-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain HCD_03720 2eff68235b5753631a41c994777ef420 320 SUPERFAMILY SSF110997 250 309 2.35E-9 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 HCD_03720 2eff68235b5753631a41c994777ef420 320 Gene3D G3DSA:3.30.70.1070 251 320 1.3E-8 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 HCD_03720 2eff68235b5753631a41c994777ef420 320 SUPERFAMILY SSF50685 125 208 2.72E-7 T 13-10-2018 IPR036908 RlpA-like domain superfamily HCD_03720 2eff68235b5753631a41c994777ef420 320 Pfam PF05036 Sporulation related domain 250 315 1.5E-11 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 HCD_03720 2eff68235b5753631a41c994777ef420 320 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 123 308 1.5E-74 T 13-10-2018 IPR012997 Rare lipoprotein A HCD_03720 2eff68235b5753631a41c994777ef420 320 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 17 213 22.442 T 13-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 16 825 4.2E-154 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 Gene3D G3DSA:3.10.20.310 84 162 3.3E-7 T 13-10-2018 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 Gene3D G3DSA:3.10.20.310 164 255 6.0E-10 T 13-10-2018 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 Pfam PF07244 Surface antigen variable number repeat 84 159 5.4E-10 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 Pfam PF07244 Surface antigen variable number repeat 339 411 1.3E-11 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 Pfam PF07244 Surface antigen variable number repeat 257 334 5.0E-10 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 Pfam PF07244 Surface antigen variable number repeat 165 254 1.7E-6 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 Gene3D G3DSA:2.40.160.50 415 563 9.9E-15 T 13-10-2018 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 Gene3D G3DSA:3.10.20.310 9 82 3.9E-8 T 13-10-2018 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 PIRSF PIRSF006076 1 858 5.4E-214 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 Gene3D G3DSA:3.10.20.310 256 338 3.9E-13 T 13-10-2018 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 Pfam PF01103 Surface antigen 438 858 9.8E-94 T 13-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 Gene3D G3DSA:3.10.20.310 340 414 1.9E-19 T 13-10-2018 HCD_05310 5ce4edd7bba10303dee03f2cd6afe50f 858 Gene3D G3DSA:2.40.160.50 568 858 7.2E-34 T 13-10-2018 HCD_03870 2d6ce93d20e85e1818a8b40ec8cbd86f 323 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 10 294 25.137 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 HCD_03870 2d6ce93d20e85e1818a8b40ec8cbd86f 323 PRINTS PR01755 Bacterial translocase SecF protein signature 151 165 1.4E-29 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial HCD_03870 2d6ce93d20e85e1818a8b40ec8cbd86f 323 PRINTS PR01755 Bacterial translocase SecF protein signature 231 246 1.4E-29 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial HCD_03870 2d6ce93d20e85e1818a8b40ec8cbd86f 323 PRINTS PR01755 Bacterial translocase SecF protein signature 199 217 1.4E-29 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial HCD_03870 2d6ce93d20e85e1818a8b40ec8cbd86f 323 PRINTS PR01755 Bacterial translocase SecF protein signature 37 52 1.4E-29 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial HCD_03870 2d6ce93d20e85e1818a8b40ec8cbd86f 323 Pfam PF02355 Protein export membrane protein 112 290 6.8E-67 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial HCD_03870 2d6ce93d20e85e1818a8b40ec8cbd86f 323 SUPERFAMILY SSF82866 118 291 8.24E-40 T 13-10-2018 HCD_03870 2d6ce93d20e85e1818a8b40ec8cbd86f 323 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 96 279 1.3E-58 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial HCD_03870 2d6ce93d20e85e1818a8b40ec8cbd86f 323 Gene3D G3DSA:1.20.1640.10 105 304 6.9E-14 T 13-10-2018 HCD_03870 2d6ce93d20e85e1818a8b40ec8cbd86f 323 Pfam PF07549 SecD/SecF GG Motif 33 59 1.6E-9 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site HCD_03870 2d6ce93d20e85e1818a8b40ec8cbd86f 323 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 38 283 2.2E-90 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 HCD_04185 d7c3dc3bad34378d4d478abcea17b211 439 Pfam PF03772 Competence protein 158 396 1.6E-25 T 13-10-2018 IPR004477 ComEC/Rec2-related protein HCD_08050 bba8460138a7209ef8afe8b3afb45a6c 363 Pfam PF13288 DXP reductoisomerase C-terminal domain 242 359 1.7E-24 T 13-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 HCD_08050 bba8460138a7209ef8afe8b3afb45a6c 363 SUPERFAMILY SSF55347 115 243 3.6E-40 T 13-10-2018 HCD_08050 bba8460138a7209ef8afe8b3afb45a6c 363 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 361 2.5E-143 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 HCD_08050 bba8460138a7209ef8afe8b3afb45a6c 363 Gene3D G3DSA:1.10.1740.10 292 363 2.7E-12 T 13-10-2018 HCD_08050 bba8460138a7209ef8afe8b3afb45a6c 363 SUPERFAMILY SSF51735 2 124 1.44E-24 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_08050 bba8460138a7209ef8afe8b3afb45a6c 363 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 1 363 38.12 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 HCD_08050 bba8460138a7209ef8afe8b3afb45a6c 363 Gene3D G3DSA:3.40.50.720 1 133 2.4E-35 T 13-10-2018 HCD_08050 bba8460138a7209ef8afe8b3afb45a6c 363 SUPERFAMILY SSF69055 274 360 4.84E-15 T 13-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 HCD_08050 bba8460138a7209ef8afe8b3afb45a6c 363 PIRSF PIRSF006205 1 363 1.7E-119 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 HCD_08050 bba8460138a7209ef8afe8b3afb45a6c 363 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 129 211 2.4E-30 T 13-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 HCD_08050 bba8460138a7209ef8afe8b3afb45a6c 363 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 121 4.8E-33 T 13-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 HCD_05450 10e5321eb3850aa2e64103835510921f 302 Gene3D G3DSA:3.30.300.20 185 297 7.2E-33 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta HCD_05450 10e5321eb3850aa2e64103835510921f 302 TIGRFAM TIGR00436 era: GTP-binding protein Era 6 276 1.3E-66 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_05450 10e5321eb3850aa2e64103835510921f 302 Gene3D G3DSA:3.40.50.300 1 184 1.3E-33 T 13-10-2018 HCD_05450 10e5321eb3850aa2e64103835510921f 302 Hamap MF_00367 GTPase Era [era]. 3 294 29.821 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_05450 10e5321eb3850aa2e64103835510921f 302 SUPERFAMILY SSF54814 180 295 2.49E-33 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 HCD_05450 10e5321eb3850aa2e64103835510921f 302 Pfam PF01926 50S ribosome-binding GTPase 8 123 1.2E-17 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_05450 10e5321eb3850aa2e64103835510921f 302 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 166 1.2E-21 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 HCD_05450 10e5321eb3850aa2e64103835510921f 302 Pfam PF07650 KH domain 207 282 2.2E-14 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_05450 10e5321eb3850aa2e64103835510921f 302 SUPERFAMILY SSF52540 8 181 9.85E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_05810 b1a30ab483cb950f11914f690b430d98 257 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 185 202 - T 13-10-2018 IPR000540 Flagellar motor protein MotA, conserved site HCD_05810 b1a30ab483cb950f11914f690b430d98 257 Pfam PF01618 MotA/TolQ/ExbB proton channel family 102 217 3.4E-22 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 Gene3D G3DSA:1.10.560.10 7 518 2.6E-233 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 Gene3D G3DSA:3.30.260.10 135 409 2.6E-233 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 520 6.0E-100 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 524 1.3E-255 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 SUPERFAMILY SSF48592 6 518 5.57E-72 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 SUPERFAMILY SSF52029 183 375 3.14E-87 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 SUPERFAMILY SSF54849 137 203 3.2E-25 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 PRINTS PR00298 60kDa chaperonin signature 397 418 5.9E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 PRINTS PR00298 60kDa chaperonin signature 82 109 5.9E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 PRINTS PR00298 60kDa chaperonin signature 26 52 5.9E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 PRINTS PR00298 60kDa chaperonin signature 349 374 5.9E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 PRINTS PR00298 60kDa chaperonin signature 267 290 5.9E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 Gene3D G3DSA:3.50.7.10 191 371 2.6E-233 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 Hamap MF_00600 60 kDa chaperonin [groL]. 1 545 40.985 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 HCD_00035 e89896f15a1ca5436d3919780c301ee7 546 ProSitePatterns PS00296 Chaperonins cpn60 signature. 404 415 - T 13-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 HCD_07355 228e47208c3bd3a6446c92cbb73497d3 503 PIRSF PIRSF039088 2 503 7.5E-257 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07355 228e47208c3bd3a6446c92cbb73497d3 503 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 502 1.8E-266 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07355 228e47208c3bd3a6446c92cbb73497d3 503 Gene3D G3DSA:1.20.150.20 373 503 2.0E-50 T 13-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07355 228e47208c3bd3a6446c92cbb73497d3 503 SUPERFAMILY SSF47917 373 501 8.89E-48 T 13-10-2018 HCD_07355 228e47208c3bd3a6446c92cbb73497d3 503 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 26 91 9.1E-17 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_07355 228e47208c3bd3a6446c92cbb73497d3 503 SUPERFAMILY SSF52540 96 371 3.14E-101 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_07355 228e47208c3bd3a6446c92cbb73497d3 503 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 372 497 6.6E-49 T 13-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07355 228e47208c3bd3a6446c92cbb73497d3 503 Gene3D G3DSA:2.40.30.20 3 93 2.1E-31 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_07355 228e47208c3bd3a6446c92cbb73497d3 503 Gene3D G3DSA:3.40.50.300 95 372 8.9E-128 T 13-10-2018 HCD_07355 228e47208c3bd3a6446c92cbb73497d3 503 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 356 365 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_07355 228e47208c3bd3a6446c92cbb73497d3 503 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 2 502 52.268 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07355 228e47208c3bd3a6446c92cbb73497d3 503 SUPERFAMILY SSF50615 11 94 1.33E-25 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_07355 228e47208c3bd3a6446c92cbb73497d3 503 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 365 1.2E-76 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_03215 08f8a3a7e47cff8cd07666cefebb5a95 488 Gene3D G3DSA:1.20.210.10 2 483 2.1E-177 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_03215 08f8a3a7e47cff8cd07666cefebb5a95 488 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 215 270 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_03215 08f8a3a7e47cff8cd07666cefebb5a95 488 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 13 454 1.4E-103 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_03215 08f8a3a7e47cff8cd07666cefebb5a95 488 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 8 486 2.7E-251 T 13-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 HCD_03215 08f8a3a7e47cff8cd07666cefebb5a95 488 SUPERFAMILY SSF81442 9 485 8.9E-112 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_00055 c601432832bc41b76793b3c683687fe5 313 Gene3D G3DSA:3.90.25.10 168 304 6.6E-79 T 13-10-2018 HCD_00055 c601432832bc41b76793b3c683687fe5 313 Gene3D G3DSA:3.40.50.720 5 295 6.6E-79 T 13-10-2018 HCD_00055 c601432832bc41b76793b3c683687fe5 313 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 2 306 40.376 T 13-10-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00051+1.1.1.271|KEGG: 00520+1.1.1.271|MetaCyc: PWY-66|Reactome: R-HSA-6787639 HCD_00055 c601432832bc41b76793b3c683687fe5 313 SUPERFAMILY SSF51735 3 307 4.45E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_00055 c601432832bc41b76793b3c683687fe5 313 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 238 2.7E-52 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 HCD_01870 102a5f75f847202dad7666bf945beefb 1889 Gene3D G3DSA:2.40.128.130 1619 1889 5.9E-17 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily HCD_01870 102a5f75f847202dad7666bf945beefb 1889 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 847 874 5.3E-35 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01870 102a5f75f847202dad7666bf945beefb 1889 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 820 842 5.3E-35 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01870 102a5f75f847202dad7666bf945beefb 1889 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 1559 1579 5.3E-35 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01870 102a5f75f847202dad7666bf945beefb 1889 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 738 759 5.3E-35 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01870 102a5f75f847202dad7666bf945beefb 1889 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 1172 1197 5.3E-35 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01870 102a5f75f847202dad7666bf945beefb 1889 SUPERFAMILY SSF103515 1612 1889 2.22E-19 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily HCD_01870 102a5f75f847202dad7666bf945beefb 1889 Pfam PF02691 Vacuolating cyotoxin 239 698 5.0E-116 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01870 102a5f75f847202dad7666bf945beefb 1889 Pfam PF02691 Vacuolating cyotoxin 729 951 5.2E-40 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01870 102a5f75f847202dad7666bf945beefb 1889 Pfam PF02691 Vacuolating cyotoxin 994 1600 9.0E-168 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01870 102a5f75f847202dad7666bf945beefb 1889 Pfam PF02691 Vacuolating cyotoxin 5 224 2.5E-39 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01870 102a5f75f847202dad7666bf945beefb 1889 SMART SM00869 1619 1877 1.0E-10 T 13-10-2018 IPR005546 Autotransporter beta-domain HCD_06965 b1a91a80a74f1eac5461511081fa3b52 757 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 644 665 9.1E-17 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06965 b1a91a80a74f1eac5461511081fa3b52 757 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 585 606 9.1E-17 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06965 b1a91a80a74f1eac5461511081fa3b52 757 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 717 738 9.1E-17 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06965 b1a91a80a74f1eac5461511081fa3b52 757 Pfam PF01856 Helicobacter outer membrane protein 598 757 2.7E-42 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04175 99a1297eb4dc2f1d95549e0a6b184694 404 Gene3D G3DSA:3.90.220.20 214 355 5.2E-76 T 13-10-2018 HCD_04175 99a1297eb4dc2f1d95549e0a6b184694 404 SUPERFAMILY SSF116734 203 404 1.14E-40 T 13-10-2018 HCD_04175 99a1297eb4dc2f1d95549e0a6b184694 404 Pfam PF01420 Type I restriction modification DNA specificity domain 11 182 2.9E-22 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 HCD_04175 99a1297eb4dc2f1d95549e0a6b184694 404 Pfam PF01420 Type I restriction modification DNA specificity domain 213 382 8.7E-19 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 HCD_04175 99a1297eb4dc2f1d95549e0a6b184694 404 Gene3D G3DSA:1.10.287.1120 158 399 5.2E-76 T 13-10-2018 HCD_04175 99a1297eb4dc2f1d95549e0a6b184694 404 Gene3D G3DSA:3.90.220.20 10 403 5.2E-76 T 13-10-2018 HCD_04175 99a1297eb4dc2f1d95549e0a6b184694 404 SUPERFAMILY SSF116734 6 210 2.29E-37 T 13-10-2018 HCD_05785 24f7a91c10b3dd76d879303cd17e79f9 722 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 682 703 3.7E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05785 24f7a91c10b3dd76d879303cd17e79f9 722 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 548 569 3.7E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05785 24f7a91c10b3dd76d879303cd17e79f9 722 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 574 594 3.7E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05785 24f7a91c10b3dd76d879303cd17e79f9 722 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 595 616 3.7E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05785 24f7a91c10b3dd76d879303cd17e79f9 722 Pfam PF01856 Helicobacter outer membrane protein 559 722 1.3E-41 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_08275 10086482b2927770b24352904825f6fd 448 SUPERFAMILY SSF52540 65 284 3.78E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_08275 10086482b2927770b24352904825f6fd 448 Gene3D G3DSA:3.30.230.10 317 446 6.8E-14 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup HCD_08275 10086482b2927770b24352904825f6fd 448 Pfam PF13481 AAA domain 62 220 1.0E-9 T 13-10-2018 HCD_08275 10086482b2927770b24352904825f6fd 448 SMART SM00382 88 243 2.2E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_08275 10086482b2927770b24352904825f6fd 448 Hamap MF_01498 DNA repair protein RadA [radA]. 21 448 40.2 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 HCD_08275 10086482b2927770b24352904825f6fd 448 SUPERFAMILY SSF54211 253 430 1.93E-29 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_08275 10086482b2927770b24352904825f6fd 448 PRINTS PR01874 DNA repair protein radA signature 122 139 2.4E-90 T 13-10-2018 HCD_08275 10086482b2927770b24352904825f6fd 448 PRINTS PR01874 DNA repair protein radA signature 211 239 2.4E-90 T 13-10-2018 HCD_08275 10086482b2927770b24352904825f6fd 448 PRINTS PR01874 DNA repair protein radA signature 80 108 2.4E-90 T 13-10-2018 HCD_08275 10086482b2927770b24352904825f6fd 448 PRINTS PR01874 DNA repair protein radA signature 172 196 2.4E-90 T 13-10-2018 HCD_08275 10086482b2927770b24352904825f6fd 448 PRINTS PR01874 DNA repair protein radA signature 246 272 2.4E-90 T 13-10-2018 HCD_08275 10086482b2927770b24352904825f6fd 448 PRINTS PR01874 DNA repair protein radA signature 10 34 2.4E-90 T 13-10-2018 HCD_08275 10086482b2927770b24352904825f6fd 448 PRINTS PR01874 DNA repair protein radA signature 319 342 2.4E-90 T 13-10-2018 HCD_08275 10086482b2927770b24352904825f6fd 448 Pfam PF13541 Subunit ChlI of Mg-chelatase 343 426 1.1E-6 T 13-10-2018 HCD_08275 10086482b2927770b24352904825f6fd 448 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 445 1.6E-218 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 HCD_08275 10086482b2927770b24352904825f6fd 448 Gene3D G3DSA:3.40.50.300 63 285 2.0E-38 T 13-10-2018 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 96 463 3.2E-45 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 Gene3D G3DSA:3.90.960.10 240 394 4.7E-205 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 SUPERFAMILY SSF55681 10 483 2.49E-83 T 13-10-2018 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 SUPERFAMILY SSF52954 469 575 1.66E-24 T 13-10-2018 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 575 34.948 T 13-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 Gene3D G3DSA:3.30.930.10 11 470 4.7E-205 T 13-10-2018 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 Gene3D G3DSA:3.40.50.800 4 558 4.7E-205 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 3.2E-14 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 3.2E-14 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 3.2E-14 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 3.2E-14 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 572 7.9E-241 T 13-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 SUPERFAMILY SSF55826 218 392 3.01E-19 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 Pfam PF04073 Aminoacyl-tRNA editing domain 257 381 4.1E-15 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 HCD_06210 a0f1a857fc13bfb99f2698a590990136 577 Pfam PF03129 Anticodon binding domain 480 572 7.6E-17 T 13-10-2018 IPR004154 Anticodon-binding HCD_03370 9bc2935d97389851984673c269424150 116 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 22 71 2.0E-14 T 13-10-2018 HCD_03370 9bc2935d97389851984673c269424150 116 PRINTS PR00062 Ribosomal protein L20 signature 74 100 7.8E-38 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03370 9bc2935d97389851984673c269424150 116 PRINTS PR00062 Ribosomal protein L20 signature 41 70 7.8E-38 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03370 9bc2935d97389851984673c269424150 116 PRINTS PR00062 Ribosomal protein L20 signature 11 40 7.8E-38 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03370 9bc2935d97389851984673c269424150 116 Gene3D G3DSA:1.10.1900.20 55 116 3.0E-28 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03370 9bc2935d97389851984673c269424150 116 ProSitePatterns PS00937 Ribosomal protein L20 signature. 53 69 - T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03370 9bc2935d97389851984673c269424150 116 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 1 114 27.817 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03370 9bc2935d97389851984673c269424150 116 Gene3D G3DSA:1.10.720.90 1 54 3.0E-22 T 13-10-2018 HCD_03370 9bc2935d97389851984673c269424150 116 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 113 1.4E-49 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03370 9bc2935d97389851984673c269424150 116 SUPERFAMILY SSF74731 1 115 5.49E-46 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03370 9bc2935d97389851984673c269424150 116 Pfam PF00453 Ribosomal protein L20 2 106 1.2E-44 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_02040 3ef9ecb4f62eee91e45f0afce0837f8e 218 Gene3D G3DSA:3.90.950.20 51 218 1.6E-53 T 13-10-2018 IPR036653 CinA-like, C-terminal HCD_02040 3ef9ecb4f62eee91e45f0afce0837f8e 218 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 71 217 3.4E-61 T 13-10-2018 IPR008136 CinA, C-terminal HCD_02040 3ef9ecb4f62eee91e45f0afce0837f8e 218 SUPERFAMILY SSF142433 65 217 2.88E-47 T 13-10-2018 IPR036653 CinA-like, C-terminal HCD_02040 3ef9ecb4f62eee91e45f0afce0837f8e 218 Pfam PF02464 Competence-damaged protein 65 217 1.0E-52 T 13-10-2018 IPR008136 CinA, C-terminal HCD_08025 1a8b532806bcb02054d59edf500c1a27 375 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 171 192 3.6E-12 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_08025 1a8b532806bcb02054d59edf500c1a27 375 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 199 219 3.6E-12 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_08025 1a8b532806bcb02054d59edf500c1a27 375 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 315 336 3.6E-12 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_08025 1a8b532806bcb02054d59edf500c1a27 375 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 237 258 3.6E-12 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_08025 1a8b532806bcb02054d59edf500c1a27 375 Pfam PF01856 Helicobacter outer membrane protein 182 375 7.2E-29 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05600 fd4d455d64f20cdf91acc05845a68fe8 171 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 165 1.1E-60 T 13-10-2018 IPR023635 Peptide deformylase HCD_05600 fd4d455d64f20cdf91acc05845a68fe8 171 PRINTS PR01576 Peptide deformylase signature 125 154 6.4E-36 T 13-10-2018 IPR023635 Peptide deformylase HCD_05600 fd4d455d64f20cdf91acc05845a68fe8 171 PRINTS PR01576 Peptide deformylase signature 106 124 6.4E-36 T 13-10-2018 IPR023635 Peptide deformylase HCD_05600 fd4d455d64f20cdf91acc05845a68fe8 171 PRINTS PR01576 Peptide deformylase signature 94 105 6.4E-36 T 13-10-2018 IPR023635 Peptide deformylase HCD_05600 fd4d455d64f20cdf91acc05845a68fe8 171 PRINTS PR01576 Peptide deformylase signature 33 62 6.4E-36 T 13-10-2018 IPR023635 Peptide deformylase HCD_05600 fd4d455d64f20cdf91acc05845a68fe8 171 Gene3D G3DSA:3.90.45.10 2 164 3.5E-60 T 13-10-2018 IPR036821 Peptide deformylase superfamily HCD_05600 fd4d455d64f20cdf91acc05845a68fe8 171 Pfam PF01327 Polypeptide deformylase 5 156 3.9E-46 T 13-10-2018 IPR023635 Peptide deformylase HCD_05600 fd4d455d64f20cdf91acc05845a68fe8 171 SUPERFAMILY SSF56420 1 166 1.7E-52 T 13-10-2018 IPR036821 Peptide deformylase superfamily HCD_05600 fd4d455d64f20cdf91acc05845a68fe8 171 Hamap MF_00163 Peptide deformylase [def]. 2 167 27.809 T 13-10-2018 IPR023635 Peptide deformylase HCD_05600 fd4d455d64f20cdf91acc05845a68fe8 171 PIRSF PIRSF004749 1 171 1.8E-48 T 13-10-2018 IPR023635 Peptide deformylase HCD_02855 0108db415ec73763866235208102c775 692 SUPERFAMILY SSF54211 478 598 4.3E-47 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_02855 0108db415ec73763866235208102c775 692 SUPERFAMILY SSF52540 6 280 2.81E-110 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02855 0108db415ec73763866235208102c775 692 Gene3D G3DSA:3.40.50.300 1 292 6.3E-116 T 13-10-2018 HCD_02855 0108db415ec73763866235208102c775 692 Pfam PF00679 Elongation factor G C-terminus 599 685 4.6E-33 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like HCD_02855 0108db415ec73763866235208102c775 692 SUPERFAMILY SSF54980 602 689 2.19E-32 T 13-10-2018 IPR035647 EF-G domain III/V-like HCD_02855 0108db415ec73763866235208102c775 692 Pfam PF14492 Elongation Factor G, domain II 403 477 3.5E-33 T 13-10-2018 HCD_02855 0108db415ec73763866235208102c775 692 PRINTS PR00315 GTP-binding elongation factor signature 12 25 2.9E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02855 0108db415ec73763866235208102c775 692 PRINTS PR00315 GTP-binding elongation factor signature 130 139 2.9E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02855 0108db415ec73763866235208102c775 692 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.9E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02855 0108db415ec73763866235208102c775 692 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.9E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02855 0108db415ec73763866235208102c775 692 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.9E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02855 0108db415ec73763866235208102c775 692 Gene3D G3DSA:2.40.30.10 293 404 2.8E-45 T 13-10-2018 HCD_02855 0108db415ec73763866235208102c775 692 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 691 0.0 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 HCD_02855 0108db415ec73763866235208102c775 692 SUPERFAMILY SSF54980 403 480 2.66E-25 T 13-10-2018 IPR035647 EF-G domain III/V-like HCD_02855 0108db415ec73763866235208102c775 692 Hamap MF_00054_B Elongation factor G [fusA]. 6 690 114.811 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 HCD_02855 0108db415ec73763866235208102c775 692 Pfam PF03144 Elongation factor Tu domain 2 323 390 2.8E-17 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 HCD_02855 0108db415ec73763866235208102c775 692 Pfam PF03764 Elongation factor G, domain IV 478 596 2.8E-50 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 HCD_02855 0108db415ec73763866235208102c775 692 SMART SM00838 599 686 1.3E-61 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like HCD_02855 0108db415ec73763866235208102c775 692 Gene3D G3DSA:3.30.230.10 483 686 1.9E-97 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup HCD_02855 0108db415ec73763866235208102c775 692 SUPERFAMILY SSF50447 264 403 3.77E-37 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily HCD_02855 0108db415ec73763866235208102c775 692 Pfam PF00009 Elongation factor Tu GTP binding domain 9 280 5.4E-70 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02855 0108db415ec73763866235208102c775 692 Gene3D G3DSA:3.30.70.870 405 479 1.6E-31 T 13-10-2018 HCD_02855 0108db415ec73763866235208102c775 692 Gene3D G3DSA:3.30.70.240 603 673 1.9E-97 T 13-10-2018 HCD_02855 0108db415ec73763866235208102c775 692 SMART SM00889 479 597 1.1E-76 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 HCD_02855 0108db415ec73763866235208102c775 692 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 179 1.3E-32 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 HCD_02855 0108db415ec73763866235208102c775 692 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 Gene3D G3DSA:2.40.37.10 7 548 6.7E-182 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 PRINTS PR01180 Arginine decarboxylase signature 54 69 1.8E-38 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 PRINTS PR01180 Arginine decarboxylase signature 133 148 1.8E-38 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 PRINTS PR01180 Arginine decarboxylase signature 447 468 1.8E-38 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 PRINTS PR01180 Arginine decarboxylase signature 521 542 1.8E-38 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 PRINTS PR01180 Arginine decarboxylase signature 472 497 1.8E-38 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 PRINTS PR01180 Arginine decarboxylase signature 78 92 1.8E-38 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 PRINTS PR01180 Arginine decarboxylase signature 185 207 1.8E-38 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 PRINTS PR01180 Arginine decarboxylase signature 311 328 1.8E-38 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 SUPERFAMILY SSF51419 54 333 1.78E-51 T 13-10-2018 IPR029066 PLP-binding barrel HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 PIRSF PIRSF001336 1 614 1.1E-211 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 Gene3D G3DSA:1.20.58.930 348 440 6.7E-182 T 13-10-2018 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 Gene3D G3DSA:3.20.20.10 55 333 6.7E-182 T 13-10-2018 IPR029066 PLP-binding barrel HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 321 340 7.9E-12 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 521 534 7.9E-12 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 228 241 7.9E-12 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 110 122 7.9E-12 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 77 331 2.0E-33 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 TIGRFAM TIGR01273 speA: arginine decarboxylase 3 612 3.6E-236 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 HCD_07220 9439c68b1e41a447891d263ca82b8d62 615 SUPERFAMILY SSF50621 437 546 3.77E-15 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 Pfam PF01556 DnaJ C terminal domain 129 271 5.1E-26 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 Pfam PF00226 DnaJ domain 5 65 5.6E-27 T 13-10-2018 IPR001623 DnaJ domain HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 Gene3D G3DSA:1.10.287.110 1 113 1.9E-35 T 13-10-2018 IPR036869 Chaperone J-domain superfamily HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 SUPERFAMILY SSF46565 3 87 4.97E-32 T 13-10-2018 IPR036869 Chaperone J-domain superfamily HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 Gene3D G3DSA:2.60.260.20 193 288 3.2E-15 T 13-10-2018 HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 PRINTS PR00625 DnaJ domain signature 24 39 7.8E-27 T 13-10-2018 IPR001623 DnaJ domain HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 PRINTS PR00625 DnaJ domain signature 40 60 7.8E-27 T 13-10-2018 IPR001623 DnaJ domain HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 PRINTS PR00625 DnaJ domain signature 6 24 7.8E-27 T 13-10-2018 IPR001623 DnaJ domain HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 PRINTS PR00625 DnaJ domain signature 60 79 7.8E-27 T 13-10-2018 IPR001623 DnaJ domain HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 Gene3D G3DSA:2.60.260.20 125 190 1.0E-13 T 13-10-2018 HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 SMART SM00271 3 60 2.7E-29 T 13-10-2018 IPR001623 DnaJ domain HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 ProSitePatterns PS00636 Nt-dnaJ domain signature. 45 64 - T 13-10-2018 IPR018253 DnaJ domain, conserved site HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 SUPERFAMILY SSF49493 197 273 1.01E-11 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 HCD_06085 1ad13adc3f014f90a9ab43a1c1b51306 288 SUPERFAMILY SSF49493 122 205 2.88E-13 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 HCD_08565 4c7964ed3e2d699c6af96d7908083d8a 330 Gene3D G3DSA:3.75.10.10 1 330 2.2E-133 T 13-10-2018 HCD_08565 4c7964ed3e2d699c6af96d7908083d8a 330 SUPERFAMILY SSF55909 3 329 3.39E-112 T 13-10-2018 HCD_08565 4c7964ed3e2d699c6af96d7908083d8a 330 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 3 328 1.5E-103 T 13-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 HCD_00795 640afdc057884ee11bfc0edac65c588d 133 Gene3D G3DSA:3.30.420.270 58 121 8.3E-6 T 13-10-2018 HCD_00795 640afdc057884ee11bfc0edac65c588d 133 Pfam PF02472 Biopolymer transport protein ExbD/TolR 4 127 7.3E-24 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 HCD_04395 2433e7ab51873f5f686b04d1c6d57e8e 529 Pfam PF01384 Phosphate transporter family 64 514 2.1E-104 T 13-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 HCD_02125 8e1a86f1e96aa910926b280c213dea60 78 Pfam PF03776 Septum formation topological specificity factor MinE 13 77 9.3E-15 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 HCD_02125 8e1a86f1e96aa910926b280c213dea60 78 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 2 77 4.3E-27 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 HCD_02125 8e1a86f1e96aa910926b280c213dea60 78 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 78 13.615 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 HCD_02125 8e1a86f1e96aa910926b280c213dea60 78 Gene3D G3DSA:3.30.1070.10 1 78 5.0E-32 T 13-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 HCD_02125 8e1a86f1e96aa910926b280c213dea60 78 SUPERFAMILY SSF55229 30 77 1.24E-9 T 13-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 HCD_07385 c0db29dd7c5664721aa40e514afece9f 212 Gene3D G3DSA:3.30.930.10 2 178 4.6E-31 T 13-10-2018 HCD_07385 c0db29dd7c5664721aa40e514afece9f 212 SUPERFAMILY SSF55681 4 154 1.16E-30 T 13-10-2018 HCD_07385 c0db29dd7c5664721aa40e514afece9f 212 Pfam PF03099 Biotin/lipoate A/B protein ligase family 9 130 5.0E-19 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 HCD_07385 c0db29dd7c5664721aa40e514afece9f 212 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 6 207 2.8E-51 T 13-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 HCD_03945 81cc1e6375a9a0f79a3b66162489359f 344 Gene3D G3DSA:1.10.150.20 224 344 2.5E-44 T 13-10-2018 HCD_03945 81cc1e6375a9a0f79a3b66162489359f 344 SUPERFAMILY SSF56553 53 181 1.44E-28 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_03945 81cc1e6375a9a0f79a3b66162489359f 344 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 62 163 9.3E-21 T 13-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_03945 81cc1e6375a9a0f79a3b66162489359f 344 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 321 28.379 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_03945 81cc1e6375a9a0f79a3b66162489359f 344 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 30 230 5.6E-12 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_03945 81cc1e6375a9a0f79a3b66162489359f 344 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 250 312 1.1E-25 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_03945 81cc1e6375a9a0f79a3b66162489359f 344 SUPERFAMILY SSF47789 257 324 3.01E-20 T 13-10-2018 HCD_03945 81cc1e6375a9a0f79a3b66162489359f 344 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 320 4.9E-96 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_03945 81cc1e6375a9a0f79a3b66162489359f 344 SMART SM00662 23 237 1.3E-68 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_03945 81cc1e6375a9a0f79a3b66162489359f 344 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 261 325 4.0E-19 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_03945 81cc1e6375a9a0f79a3b66162489359f 344 Gene3D G3DSA:2.170.120.12 53 180 7.1E-63 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_03945 81cc1e6375a9a0f79a3b66162489359f 344 Gene3D G3DSA:3.30.1360.10 18 223 7.1E-63 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_03945 81cc1e6375a9a0f79a3b66162489359f 344 SUPERFAMILY SSF55257 11 235 1.16E-21 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 SUPERFAMILY SSF50677 205 426 1.47E-34 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 561 574 5.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 233 256 5.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 424 439 5.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 597 606 5.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 5.7E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 SUPERFAMILY SSF52374 4 683 6.86E-127 T 13-10-2018 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 Gene3D G3DSA:3.90.740.10 196 431 1.3E-212 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 Gene3D G3DSA:3.40.50.620 25 665 1.3E-212 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_00705 35e2831f62528f0df04d19d76026c64f 953 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 677 2.5E-187 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 Gene3D G3DSA:1.10.730.20 676 952 1.4E-57 T 13-10-2018 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 Pfam PF08264 Anticodon-binding domain of tRNA 722 877 2.1E-16 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 879 2.2E-280 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 950 18.353 T 13-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 HCD_00705 35e2831f62528f0df04d19d76026c64f 953 SUPERFAMILY SSF47323 688 951 2.8E-40 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_05990 9bb80c2481c91098ec528fa645e5970f 495 Gene3D G3DSA:3.40.50.11810 360 495 8.8E-57 T 13-10-2018 HCD_05990 9bb80c2481c91098ec528fa645e5970f 495 Gene3D G3DSA:1.10.1060.20 95 207 1.7E-49 T 13-10-2018 HCD_05990 9bb80c2481c91098ec528fa645e5970f 495 Gene3D G3DSA:3.10.20.30 1 94 3.6E-30 T 13-10-2018 IPR012675 Beta-grasp domain superfamily HCD_05990 9bb80c2481c91098ec528fa645e5970f 495 Gene3D G3DSA:3.40.50.11800 208 359 7.7E-73 T 13-10-2018 HCD_00130 37aa9aef95760a28d15422f68d8d5ff1 221 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 197 19.187 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 HCD_00130 37aa9aef95760a28d15422f68d8d5ff1 221 Pfam PF13500 AAA domain 4 179 2.1E-25 T 13-10-2018 HCD_00130 37aa9aef95760a28d15422f68d8d5ff1 221 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 171 2.1E-33 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 HCD_00130 37aa9aef95760a28d15422f68d8d5ff1 221 SUPERFAMILY SSF52540 1 179 1.15E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_00130 37aa9aef95760a28d15422f68d8d5ff1 221 Gene3D G3DSA:3.40.50.300 2 221 3.6E-70 T 13-10-2018 HCD_01095 41e67ff13d7435faa10b0b114ac86fea 133 Gene3D G3DSA:3.40.50.300 2 131 3.9E-25 T 13-10-2018 HCD_01095 41e67ff13d7435faa10b0b114ac86fea 133 SUPERFAMILY SSF52540 23 100 5.75E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01095 41e67ff13d7435faa10b0b114ac86fea 133 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 6 130 3.7E-39 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 HCD_01095 41e67ff13d7435faa10b0b114ac86fea 133 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 5 118 8.3E-23 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 HCD_02120 c70a26182e3a2e286151f4d51259c5bf 266 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 2 210 1.8E-68 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 HCD_02120 c70a26182e3a2e286151f4d51259c5bf 266 Pfam PF02481 DNA recombination-mediator protein A 12 198 4.8E-52 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 HCD_02120 c70a26182e3a2e286151f4d51259c5bf 266 Gene3D G3DSA:3.40.50.450 1 220 4.3E-74 T 13-10-2018 HCD_02120 c70a26182e3a2e286151f4d51259c5bf 266 SUPERFAMILY SSF102405 14 180 9.81E-23 T 13-10-2018 HCD_02190 fbbdeb5628dce02d42aee735ed941b43 79 Pfam PF02416 mttA/Hcf106 family 5 60 2.7E-24 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 HCD_02190 fbbdeb5628dce02d42aee735ed941b43 79 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 49 2.5E-24 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 HCD_02190 fbbdeb5628dce02d42aee735ed941b43 79 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 76 22.095 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 HCD_00885 8b9dcd849b57fc2b9875262c9c9939b2 104 Gene3D G3DSA:3.40.30.10 2 104 8.2E-25 T 13-10-2018 HCD_00885 8b9dcd849b57fc2b9875262c9c9939b2 104 SUPERFAMILY SSF52833 3 103 6.1E-27 T 13-10-2018 IPR036249 Thioredoxin-like superfamily HCD_00885 8b9dcd849b57fc2b9875262c9c9939b2 104 Pfam PF00085 Thioredoxin 4 101 4.3E-21 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 HCD_00885 8b9dcd849b57fc2b9875262c9c9939b2 104 PIRSF PIRSF000077 1 101 5.8E-21 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 HCD_00885 8b9dcd849b57fc2b9875262c9c9939b2 104 PRINTS PR00421 Thioredoxin family signature 67 78 3.0E-5 T 13-10-2018 HCD_00885 8b9dcd849b57fc2b9875262c9c9939b2 104 PRINTS PR00421 Thioredoxin family signature 27 36 3.0E-5 T 13-10-2018 HCD_00885 8b9dcd849b57fc2b9875262c9c9939b2 104 PRINTS PR00421 Thioredoxin family signature 19 27 3.0E-5 T 13-10-2018 HCD_06485 22f0d400f08dcc2a9db8663b7aab161e 244 Pfam PF00849 RNA pseudouridylate synthase 87 197 1.0E-25 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_06485 22f0d400f08dcc2a9db8663b7aab161e 244 SUPERFAMILY SSF55120 55 230 6.4E-46 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_06485 22f0d400f08dcc2a9db8663b7aab161e 244 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 89 103 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_06485 22f0d400f08dcc2a9db8663b7aab161e 244 Gene3D G3DSA:3.30.2350.10 47 237 2.2E-47 T 13-10-2018 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 Pfam PF09334 tRNA synthetases class I (M) 152 369 1.8E-60 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 5 515 9.8E-169 T 13-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 Gene3D G3DSA:2.40.50.140 532 639 2.0E-29 T 13-10-2018 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 Gene3D G3DSA:1.10.730.10 347 520 2.9E-32 T 13-10-2018 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 513 639 1.3E-44 T 13-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 SUPERFAMILY SSF52374 3 355 1.18E-97 T 13-10-2018 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 Gene3D G3DSA:3.40.50.620 6 342 1.4E-137 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 Gene3D G3DSA:2.170.220.10 115 235 1.4E-137 T 13-10-2018 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 514 44.799 T 13-10-2018 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 Pfam PF01588 Putative tRNA binding domain 545 636 2.2E-23 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 SUPERFAMILY SSF47323 358 514 1.2E-28 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 PRINTS PR01041 Methionyl-tRNA synthetase signature 38 52 1.3E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 PRINTS PR01041 Methionyl-tRNA synthetase signature 86 97 1.3E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 PRINTS PR01041 Methionyl-tRNA synthetase signature 265 280 1.3E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 PRINTS PR01041 Methionyl-tRNA synthetase signature 233 244 1.3E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 PRINTS PR01041 Methionyl-tRNA synthetase signature 357 368 1.3E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 PRINTS PR01041 Methionyl-tRNA synthetase signature 6 19 1.3E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 8 144 2.1E-12 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_07250 5040a9580a8486b3e2eaeb15e9108e86 640 SUPERFAMILY SSF50249 538 638 1.44E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_05135 2d65617d6d798c7e486879a025657f5b 828 Gene3D G3DSA:3.30.1360.40 240 335 4.4E-206 T 13-10-2018 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 714 760 8.7E-12 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 614 658 2.7E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 663 708 1.2E-13 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 556 604 1.0E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 766 806 2.1E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 507 553 2.2E-6 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 16 697 9.2E-191 T 13-10-2018 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 Gene3D G3DSA:2.120.10.90 498 809 1.0E-110 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal HCD_05135 2d65617d6d798c7e486879a025657f5b 828 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 12 809 0.0 T 13-10-2018 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 Gene3D G3DSA:1.10.268.10 372 468 4.4E-206 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 SUPERFAMILY SSF56719 35 489 9.55E-175 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 SUPERFAMILY SSF101904 501 816 2.62E-101 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal HCD_05135 2d65617d6d798c7e486879a025657f5b 828 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 474 2.4E-157 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 SMART SM00434 15 467 6.0E-281 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 Gene3D G3DSA:3.90.199.10 37 489 4.4E-206 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 HCD_05135 2d65617d6d798c7e486879a025657f5b 828 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 813 24.2 T 13-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 HCD_04760 3b3438ccf3f795cb0786edb1f14ac845 477 ProSitePatterns PS00218 Amino acid permeases signature. 42 73 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 HCD_04760 3b3438ccf3f795cb0786edb1f14ac845 477 Gene3D G3DSA:1.20.1740.10 8 475 3.5E-61 T 13-10-2018 HCD_04760 3b3438ccf3f795cb0786edb1f14ac845 477 PIRSF PIRSF006060 1 476 9.3E-71 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 HCD_04760 3b3438ccf3f795cb0786edb1f14ac845 477 Pfam PF00324 Amino acid permease 18 469 1.0E-98 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 HCD_02905 82e33d845444b97bbd210b36f32bc797 52 Gene3D G3DSA:2.20.28.120 1 50 3.4E-20 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_02905 82e33d845444b97bbd210b36f32bc797 52 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 51 5.0E-24 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_02905 82e33d845444b97bbd210b36f32bc797 52 SUPERFAMILY SSF57829 1 49 2.84E-17 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 HCD_02905 82e33d845444b97bbd210b36f32bc797 52 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 13-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_02905 82e33d845444b97bbd210b36f32bc797 52 Pfam PF00471 Ribosomal protein L33 3 49 2.3E-20 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_02905 82e33d845444b97bbd210b36f32bc797 52 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 18.127 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_06660 f1a3872498c1a1cd7d85cbd1f8061d71 255 Gene3D G3DSA:3.40.50.300 1 253 3.7E-59 T 13-10-2018 HCD_06660 f1a3872498c1a1cd7d85cbd1f8061d71 255 SMART SM00382 27 217 1.4E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_06660 f1a3872498c1a1cd7d85cbd1f8061d71 255 Pfam PF00005 ABC transporter 18 168 1.3E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_06660 f1a3872498c1a1cd7d85cbd1f8061d71 255 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_06660 f1a3872498c1a1cd7d85cbd1f8061d71 255 SUPERFAMILY SSF52540 2 225 1.63E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04955 3f75b1caa37f3e7d1b70de76586b314c 195 Pfam PF03724 META domain 102 188 5.7E-12 T 13-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ HCD_04955 3f75b1caa37f3e7d1b70de76586b314c 195 Gene3D G3DSA:2.40.128.270 95 192 6.7E-8 T 13-10-2018 IPR038670 HslJ-like superfamily HCD_02515 db217aa1ac7e91514449d421334e5095 166 Gene3D G3DSA:3.40.30.10 1 166 1.5E-40 T 13-10-2018 HCD_02515 db217aa1ac7e91514449d421334e5095 166 Pfam PF08534 Redoxin 19 162 3.2E-19 T 13-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 HCD_02515 db217aa1ac7e91514449d421334e5095 166 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 13-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 HCD_02515 db217aa1ac7e91514449d421334e5095 166 SUPERFAMILY SSF52833 1 163 5.69E-31 T 13-10-2018 IPR036249 Thioredoxin-like superfamily HCD_05560 f55f0d6d840b888df59c88594e36982e 865 Gene3D G3DSA:3.40.50.300 17 405 0.0 T 13-10-2018 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 SUPERFAMILY SSF81767 234 357 3.4E-45 T 13-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 Gene3D G3DSA:3.90.1440.10 236 357 0.0 T 13-10-2018 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 788 19.086 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 SUPERFAMILY SSF52540 6 404 1.58E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_05560 f55f0d6d840b888df59c88594e36982e 865 ProSitePatterns PS01312 SecA family signature. 489 504 - T 13-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 Pfam PF02810 SEC-C motif 837 855 6.2E-7 T 13-10-2018 IPR004027 SEC-C motif HCD_05560 f55f0d6d840b888df59c88594e36982e 865 Gene3D G3DSA:1.10.3060.10 580 782 0.0 T 13-10-2018 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 Pfam PF01043 SecA preprotein cross-linking domain 240 347 5.2E-38 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 SMART SM00958 235 347 5.3E-65 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 SUPERFAMILY SSF81886 580 845 2.09E-60 T 13-10-2018 IPR036266 SecA, Wing/Scaffold superfamily HCD_05560 f55f0d6d840b888df59c88594e36982e 865 Gene3D G3DSA:3.40.50.300 406 579 0.0 T 13-10-2018 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 Pfam PF07517 SecA DEAD-like domain 8 390 2.0E-121 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 PRINTS PR00906 SecA protein signature 402 415 3.9E-63 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 PRINTS PR00906 SecA protein signature 107 121 3.9E-63 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 PRINTS PR00906 SecA protein signature 328 350 3.9E-63 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 PRINTS PR00906 SecA protein signature 365 382 3.9E-63 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 PRINTS PR00906 SecA protein signature 123 133 3.9E-63 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 PRINTS PR00906 SecA protein signature 177 197 3.9E-63 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 PRINTS PR00906 SecA protein signature 69 93 3.9E-63 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 SUPERFAMILY SSF52540 407 578 2.9E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_05560 f55f0d6d840b888df59c88594e36982e 865 Pfam PF00271 Helicase conserved C-terminal domain 429 538 2.1E-4 T 13-10-2018 IPR001650 Helicase, C-terminal HCD_05560 f55f0d6d840b888df59c88594e36982e 865 Pfam PF07516 SecA Wing and Scaffold domain 578 785 6.2E-55 T 13-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 505 1.5E-229 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 Gene3D G3DSA:1.10.1200.230 630 712 0.0 T 13-10-2018 HCD_05560 f55f0d6d840b888df59c88594e36982e 865 SMART SM00957 6 391 8.2E-257 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 PIRSF PIRSF000497 1 382 3.2E-168 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 SUPERFAMILY SSF55973 231 381 6.59E-65 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 1 381 57.163 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 231 370 2.3E-65 T 13-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 SUPERFAMILY SSF55973 108 230 2.59E-51 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 114 124 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 3 100 1.4E-37 T 13-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 Gene3D G3DSA:3.30.300.10 4 231 5.8E-166 T 13-10-2018 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 Gene3D G3DSA:3.30.300.10 101 372 5.8E-166 T 13-10-2018 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 SUPERFAMILY SSF55973 2 108 1.37E-41 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 Pfam PF02772 S-adenosylmethionine synthetase, central domain 112 229 2.3E-45 T 13-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 Gene3D G3DSA:3.30.300.10 10 268 5.8E-166 T 13-10-2018 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 4 380 3.6E-188 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 HCD_00280 cd4452dc243473aef47b35193c307ee0 383 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 257 265 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 HCD_01825 ac38b499408561e67e78100f533c83f5 718 SUPERFAMILY SSF117143 93 260 1.7E-24 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like HCD_01825 ac38b499408561e67e78100f533c83f5 718 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 638 716 4.9E-19 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain HCD_01825 ac38b499408561e67e78100f533c83f5 718 Gene3D G3DSA:2.60.98.20 455 599 4.1E-8 T 13-10-2018 IPR037058 Flagellar hook protein FlgE superfamily HCD_01825 ac38b499408561e67e78100f533c83f5 718 Pfam PF00460 Flagella basal body rod protein 5 35 1.3E-11 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 HCD_01825 ac38b499408561e67e78100f533c83f5 718 TIGRFAM TIGR02489 flgE_epsilon: flagellar hook protein FlgE 1 718 0.0 T 13-10-2018 IPR012835 Flagellar hook FlgE GO:0009288|GO:0044781 HCD_01825 ac38b499408561e67e78100f533c83f5 718 Pfam PF07196 Flagellin hook IN motif 273 325 5.4E-6 T 13-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 HCD_01825 ac38b499408561e67e78100f533c83f5 718 Pfam PF07559 Flagellar basal body protein FlaE 482 598 3.6E-11 T 13-10-2018 IPR011491 Flagellar hook protein FlgE HCD_01825 ac38b499408561e67e78100f533c83f5 718 SUPERFAMILY SSF117143 418 678 2.62E-42 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like HCD_01825 ac38b499408561e67e78100f533c83f5 718 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 271 1.5E-38 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G HCD_01825 ac38b499408561e67e78100f533c83f5 718 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 469 699 7.0E-44 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G HCD_07340 909cbf94f8d4e1e7615e5c9d42557890 122 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 83 4.0E-33 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07340 909cbf94f8d4e1e7615e5c9d42557890 122 SUPERFAMILY SSF51344 3 83 1.44E-20 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07340 909cbf94f8d4e1e7615e5c9d42557890 122 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 82 1.6E-24 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07340 909cbf94f8d4e1e7615e5c9d42557890 122 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 120 6.4E-35 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07340 909cbf94f8d4e1e7615e5c9d42557890 122 Gene3D G3DSA:2.60.15.10 2 121 8.6E-28 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07340 909cbf94f8d4e1e7615e5c9d42557890 122 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 121 18.117 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_02050 72dba26ef2d291c5060222f2ac20d77e 151 Gene3D G3DSA:3.40.1350.10 23 151 7.1E-9 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 HCD_03115 57afc4986a30a45df58a64b636cc273b 240 Gene3D G3DSA:3.30.70.980 81 238 2.3E-49 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_03115 57afc4986a30a45df58a64b636cc273b 240 Gene3D G3DSA:1.10.10.200 21 78 3.2E-26 T 13-10-2018 IPR017856 Integrase-like, N-terminal HCD_03115 57afc4986a30a45df58a64b636cc273b 240 Gene3D G3DSA:3.30.70.980 131 205 2.3E-49 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_03115 57afc4986a30a45df58a64b636cc273b 240 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 2 240 7.4E-84 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_03115 57afc4986a30a45df58a64b636cc273b 240 Pfam PF01709 Transcriptional regulator 5 239 8.8E-66 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_03115 57afc4986a30a45df58a64b636cc273b 240 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 1 240 25.453 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_03115 57afc4986a30a45df58a64b636cc273b 240 SUPERFAMILY SSF75625 4 240 1.31E-66 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_07305 51c735cbbd2b0766bc698041f7023d72 182 Gene3D G3DSA:3.10.50.40 16 151 9.9E-46 T 13-10-2018 HCD_07305 51c735cbbd2b0766bc698041f7023d72 182 SUPERFAMILY SSF54534 12 145 8.64E-31 T 13-10-2018 HCD_07305 51c735cbbd2b0766bc698041f7023d72 182 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 14 87 4.7E-11 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain HCD_07305 51c735cbbd2b0766bc698041f7023d72 182 Gene3D G3DSA:2.40.10.330 76 132 9.9E-46 T 13-10-2018 HCD_08265 0df33b4125cdab1eb098eb11cb703553 326 Pfam PF04324 BFD-like [2Fe-2S] binding domain 159 201 3.3E-11 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain HCD_08265 0df33b4125cdab1eb098eb11cb703553 326 Gene3D G3DSA:1.10.10.1100 159 203 3.2E-5 T 13-10-2018 HCD_08265 0df33b4125cdab1eb098eb11cb703553 326 SUPERFAMILY SSF117916 242 325 4.14E-20 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily HCD_08265 0df33b4125cdab1eb098eb11cb703553 326 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 260 323 6.0E-30 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 HCD_08265 0df33b4125cdab1eb098eb11cb703553 326 Pfam PF01592 NifU-like N terminal domain 14 152 1.2E-48 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 HCD_08265 0df33b4125cdab1eb098eb11cb703553 326 PIRSF PIRSF000375 12 326 4.9E-109 T 13-10-2018 IPR016217 Nitrogen fixation, NifU HCD_08265 0df33b4125cdab1eb098eb11cb703553 326 SUPERFAMILY SSF82649 14 158 2.51E-35 T 13-10-2018 HCD_08265 0df33b4125cdab1eb098eb11cb703553 326 Pfam PF01106 NifU-like domain 254 323 3.0E-20 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 HCD_08265 0df33b4125cdab1eb098eb11cb703553 326 Gene3D G3DSA:3.30.300.130 249 323 1.8E-17 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily HCD_08265 0df33b4125cdab1eb098eb11cb703553 326 Gene3D G3DSA:3.90.1010.10 14 158 2.2E-39 T 13-10-2018 HCD_06460 64d77ed449d942e8c3991695206d2c8c 424 SUPERFAMILY SSF103473 12 419 8.24E-61 T 13-10-2018 IPR036259 MFS transporter superfamily HCD_06460 64d77ed449d942e8c3991695206d2c8c 424 Pfam PF07690 Major Facilitator Superfamily 24 378 4.3E-29 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 HCD_06460 64d77ed449d942e8c3991695206d2c8c 424 Gene3D G3DSA:1.20.1250.20 14 423 1.6E-60 T 13-10-2018 HCD_06460 64d77ed449d942e8c3991695206d2c8c 424 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 SUPERFAMILY SSF50249 371 457 9.29E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 SUPERFAMILY SSF50249 453 538 3.15E-11 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 PRINTS PR00681 Ribosomal protein S1 signature 164 184 2.0E-27 T 13-10-2018 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 PRINTS PR00681 Ribosomal protein S1 signature 221 242 2.0E-27 T 13-10-2018 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 PRINTS PR00681 Ribosomal protein S1 signature 339 357 2.0E-27 T 13-10-2018 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 PRINTS PR00681 Ribosomal protein S1 signature 120 136 2.0E-27 T 13-10-2018 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 PRINTS PR00681 Ribosomal protein S1 signature 31 49 2.0E-27 T 13-10-2018 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 PRINTS PR00681 Ribosomal protein S1 signature 299 318 2.0E-27 T 13-10-2018 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 SUPERFAMILY SSF50249 200 283 3.88E-21 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 Pfam PF00575 S1 RNA binding domain 116 180 1.7E-7 T 13-10-2018 IPR003029 S1 domain GO:0003676 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 Pfam PF00575 S1 RNA binding domain 454 520 8.2E-8 T 13-10-2018 IPR003029 S1 domain GO:0003676 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 Pfam PF00575 S1 RNA binding domain 283 356 2.1E-21 T 13-10-2018 IPR003029 S1 domain GO:0003676 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 Pfam PF00575 S1 RNA binding domain 369 441 6.7E-18 T 13-10-2018 IPR003029 S1 domain GO:0003676 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 Pfam PF00575 S1 RNA binding domain 204 269 1.3E-15 T 13-10-2018 IPR003029 S1 domain GO:0003676 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 SUPERFAMILY SSF50249 264 362 1.42E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 Gene3D G3DSA:2.40.50.140 367 444 2.2E-21 T 13-10-2018 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 SUPERFAMILY SSF50249 113 181 1.09E-11 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 SUPERFAMILY SSF50249 25 106 2.9E-7 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 17 522 7.3E-190 T 13-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 Gene3D G3DSA:2.40.50.140 194 278 1.4E-21 T 13-10-2018 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 Gene3D G3DSA:2.40.50.140 279 366 1.6E-27 T 13-10-2018 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 SMART SM00316 456 522 6.4E-11 T 13-10-2018 IPR022967 RNA-binding domain, S1 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 SMART SM00316 371 441 3.4E-24 T 13-10-2018 IPR022967 RNA-binding domain, S1 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 SMART SM00316 115 180 1.1E-9 T 13-10-2018 IPR022967 RNA-binding domain, S1 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 SMART SM00316 284 356 5.5E-25 T 13-10-2018 IPR022967 RNA-binding domain, S1 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 SMART SM00316 29 96 0.012 T 13-10-2018 IPR022967 RNA-binding domain, S1 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 SMART SM00316 199 269 1.4E-20 T 13-10-2018 IPR022967 RNA-binding domain, S1 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 Gene3D G3DSA:2.40.50.140 109 193 2.5E-8 T 13-10-2018 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 Gene3D G3DSA:2.40.50.140 16 108 2.7E-8 T 13-10-2018 HCD_02660 f33db3fb0b016c1cf130d077b5f44f4e 553 Gene3D G3DSA:2.40.50.140 447 535 6.3E-12 T 13-10-2018 HCD_01345 c73758d06fdae41ceebefb1d8ab240fd 293 SUPERFAMILY SSF74653 212 278 9.29E-9 T 13-10-2018 HCD_01345 c73758d06fdae41ceebefb1d8ab240fd 293 PRINTS PR01374 Gram-negative bacterial tonB protein signature 211 232 5.1E-8 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 HCD_01345 c73758d06fdae41ceebefb1d8ab240fd 293 PRINTS PR01374 Gram-negative bacterial tonB protein signature 232 250 5.1E-8 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 HCD_01345 c73758d06fdae41ceebefb1d8ab240fd 293 PRINTS PR01374 Gram-negative bacterial tonB protein signature 109 119 5.1E-8 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 HCD_01345 c73758d06fdae41ceebefb1d8ab240fd 293 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 216 288 5.2E-14 T 13-10-2018 IPR037682 TonB, C-terminal GO:0055085 HCD_01345 c73758d06fdae41ceebefb1d8ab240fd 293 Gene3D G3DSA:3.30.1150.10 91 291 2.8E-9 T 13-10-2018 HCD_01345 c73758d06fdae41ceebefb1d8ab240fd 293 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 218 288 1.1E-15 T 13-10-2018 IPR006260 TonB/TolA, C-terminal HCD_04085 00525ea9c81b23b2d1e2919642b72006 364 SUPERFAMILY SSF52540 33 177 7.29E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04085 00525ea9c81b23b2d1e2919642b72006 364 Gene3D G3DSA:3.40.50.300 30 191 6.8E-6 T 13-10-2018 HCD_04275 dc52fe06dc1babd5cddd6c06a804043a 319 Gene3D G3DSA:1.20.58.340 133 260 3.7E-5 T 13-10-2018 HCD_04275 dc52fe06dc1babd5cddd6c06a804043a 319 Gene3D G3DSA:1.20.58.340 262 319 1.1E-19 T 13-10-2018 HCD_04275 dc52fe06dc1babd5cddd6c06a804043a 319 SUPERFAMILY SSF143865 2 252 8.5E-27 T 13-10-2018 HCD_04275 dc52fe06dc1babd5cddd6c06a804043a 319 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 2 319 8.9E-107 T 13-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 HCD_04275 dc52fe06dc1babd5cddd6c06a804043a 319 SUPERFAMILY SSF144083 254 317 8.11E-20 T 13-10-2018 HCD_04275 dc52fe06dc1babd5cddd6c06a804043a 319 Pfam PF01544 CorA-like Mg2+ transporter protein 29 315 6.3E-63 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 HCD_04510 114f2f29e93644518f96abb8d6952ffb 117 SMART SM00905 7 111 2.5E-15 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 HCD_04510 114f2f29e93644518f96abb8d6952ffb 117 SUPERFAMILY SSF55620 7 110 7.78E-18 T 13-10-2018 HCD_04510 114f2f29e93644518f96abb8d6952ffb 117 TIGRFAM TIGR00526 folB_dom: FolB domain 5 116 1.1E-23 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 HCD_04510 114f2f29e93644518f96abb8d6952ffb 117 Gene3D G3DSA:3.30.1130.10 1 112 1.6E-13 T 13-10-2018 HCD_04510 114f2f29e93644518f96abb8d6952ffb 117 Pfam PF02152 Dihydroneopterin aldolase 7 109 3.8E-16 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 HCD_01260 11b72437e602529ed06ca8b82d779686 377 SUPERFAMILY SSF53383 25 362 1.28E-62 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase HCD_01260 11b72437e602529ed06ca8b82d779686 377 Gene3D G3DSA:3.90.1150.10 29 349 3.3E-79 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 HCD_01260 11b72437e602529ed06ca8b82d779686 377 Pfam PF00155 Aminotransferase class I and II 29 347 1.5E-30 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 HCD_01260 11b72437e602529ed06ca8b82d779686 377 Gene3D G3DSA:3.40.640.10 39 275 3.3E-79 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 HCD_01260 11b72437e602529ed06ca8b82d779686 377 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 222 231 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 HCD_01685 b86bf0ced02c003eb8deb219994565f8 216 Gene3D G3DSA:3.90.550.10 1 216 5.1E-52 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_01685 b86bf0ced02c003eb8deb219994565f8 216 SUPERFAMILY SSF53448 2 215 9.96E-37 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_01685 b86bf0ced02c003eb8deb219994565f8 216 Pfam PF02348 Cytidylyltransferase 5 172 1.6E-25 T 13-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 HCD_00330 22a4d789868271ae13d77d9644d0c8bc 85 TIGRFAM TIGR00165 S18: ribosomal protein bS18 6 72 1.4E-36 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00330 22a4d789868271ae13d77d9644d0c8bc 85 Gene3D G3DSA:4.10.640.10 1 76 3.2E-22 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00330 22a4d789868271ae13d77d9644d0c8bc 85 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 3 73 18.255 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00330 22a4d789868271ae13d77d9644d0c8bc 85 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 13-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00330 22a4d789868271ae13d77d9644d0c8bc 85 SUPERFAMILY SSF46911 4 73 3.4E-23 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00330 22a4d789868271ae13d77d9644d0c8bc 85 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 20 71 2.0E-24 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00330 22a4d789868271ae13d77d9644d0c8bc 85 Pfam PF01084 Ribosomal protein S18 18 67 3.7E-21 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00330 22a4d789868271ae13d77d9644d0c8bc 85 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.1E-13 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00330 22a4d789868271ae13d77d9644d0c8bc 85 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.1E-13 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00330 22a4d789868271ae13d77d9644d0c8bc 85 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.1E-13 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00330 22a4d789868271ae13d77d9644d0c8bc 85 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.1E-13 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01430 6a842f5f6989edec846938436af8b2c1 268 SUPERFAMILY SSF54506 1 118 2.01E-25 T 13-10-2018 HCD_01430 6a842f5f6989edec846938436af8b2c1 268 Gene3D G3DSA:3.10.310.10 110 254 4.3E-52 T 13-10-2018 HCD_01430 6a842f5f6989edec846938436af8b2c1 268 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1 262 1.4E-69 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 HCD_01430 6a842f5f6989edec846938436af8b2c1 268 SUPERFAMILY SSF54506 137 259 5.02E-20 T 13-10-2018 HCD_01430 6a842f5f6989edec846938436af8b2c1 268 Pfam PF01678 Diaminopimelate epimerase 3 118 5.2E-25 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 HCD_01430 6a842f5f6989edec846938436af8b2c1 268 Pfam PF01678 Diaminopimelate epimerase 145 253 3.7E-11 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 HCD_01430 6a842f5f6989edec846938436af8b2c1 268 Gene3D G3DSA:3.10.310.10 3 256 4.3E-52 T 13-10-2018 HCD_01430 6a842f5f6989edec846938436af8b2c1 268 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 60 74 - T 13-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 HCD_04215 c8c03e65237746c629d0ff9c1ebdd5fc 336 Gene3D G3DSA:3.40.50.10800 198 286 3.0E-90 T 13-10-2018 HCD_04215 c8c03e65237746c629d0ff9c1ebdd5fc 336 SUPERFAMILY SSF142754 6 335 4.97E-90 T 13-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 HCD_04215 c8c03e65237746c629d0ff9c1ebdd5fc 336 Gene3D G3DSA:3.40.50.10800 10 316 3.0E-90 T 13-10-2018 HCD_04215 c8c03e65237746c629d0ff9c1ebdd5fc 336 Gene3D G3DSA:3.40.50.10800 88 334 3.0E-90 T 13-10-2018 HCD_04215 c8c03e65237746c629d0ff9c1ebdd5fc 336 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 4 336 1.6E-119 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 HCD_04215 c8c03e65237746c629d0ff9c1ebdd5fc 336 Pfam PF02445 Quinolinate synthetase A protein 11 334 4.4E-94 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 HCD_07895 5ddf58cfd239153e59cd16cdf650159b 118 ProSitePatterns PS01015 Ribosomal protein L19 signature. 89 104 - T 13-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_07895 5ddf58cfd239153e59cd16cdf650159b 118 PRINTS PR00061 Ribosomal protein L19 signature 36 65 3.8E-34 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07895 5ddf58cfd239153e59cd16cdf650159b 118 PRINTS PR00061 Ribosomal protein L19 signature 91 116 3.8E-34 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07895 5ddf58cfd239153e59cd16cdf650159b 118 PRINTS PR00061 Ribosomal protein L19 signature 6 35 3.8E-34 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07895 5ddf58cfd239153e59cd16cdf650159b 118 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 4 116 8.8E-47 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07895 5ddf58cfd239153e59cd16cdf650159b 118 Gene3D G3DSA:2.30.30.790 5 118 5.5E-15 T 13-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07895 5ddf58cfd239153e59cd16cdf650159b 118 SUPERFAMILY SSF50104 2 117 1.81E-39 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily HCD_07895 5ddf58cfd239153e59cd16cdf650159b 118 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 3 117 31.883 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07895 5ddf58cfd239153e59cd16cdf650159b 118 PIRSF PIRSF002191 1 118 2.5E-44 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07895 5ddf58cfd239153e59cd16cdf650159b 118 Pfam PF01245 Ribosomal protein L19 5 115 2.9E-42 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00140 82416477aef10d774281f66b0fc1c42f 425 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 32 419 1.7E-110 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 HCD_00140 82416477aef10d774281f66b0fc1c42f 425 SMART SM01329 31 421 3.4E-165 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 HCD_00140 82416477aef10d774281f66b0fc1c42f 425 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 312 331 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 HCD_00140 82416477aef10d774281f66b0fc1c42f 425 Gene3D G3DSA:3.40.718.10 2 425 9.2E-178 T 13-10-2018 HCD_00140 82416477aef10d774281f66b0fc1c42f 425 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 8 423 2.5E-233 T 13-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 HCD_00140 82416477aef10d774281f66b0fc1c42f 425 SUPERFAMILY SSF53659 9 424 3.46E-139 T 13-10-2018 HCD_05765 c4af2fb03fd7157b75c1c37fa63e4fd3 597 Pfam PF02151 UvrB/uvrC motif 207 239 2.1E-7 T 13-10-2018 IPR001943 UVR domain GO:0005515 HCD_05765 c4af2fb03fd7157b75c1c37fa63e4fd3 597 SUPERFAMILY SSF46600 203 240 5.62E-7 T 13-10-2018 IPR036876 UVR domain superfamily HCD_05765 c4af2fb03fd7157b75c1c37fa63e4fd3 597 Hamap MF_00203 UvrABC system protein C [uvrC]. 1 597 25.061 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 HCD_05765 c4af2fb03fd7157b75c1c37fa63e4fd3 597 SUPERFAMILY SSF82771 14 105 8.89E-20 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 HCD_05765 c4af2fb03fd7157b75c1c37fa63e4fd3 597 Gene3D G3DSA:3.30.420.340 376 548 2.6E-40 T 13-10-2018 IPR038476 UvrC homology region 2 superfamily HCD_05765 c4af2fb03fd7157b75c1c37fa63e4fd3 597 Gene3D G3DSA:3.40.1440.10 2 107 3.0E-30 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 HCD_05765 c4af2fb03fd7157b75c1c37fa63e4fd3 597 Pfam PF01541 GIY-YIG catalytic domain 15 98 1.6E-9 T 13-10-2018 IPR000305 GIY-YIG endonuclease HCD_05765 c4af2fb03fd7157b75c1c37fa63e4fd3 597 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 385 538 2.1E-38 T 13-10-2018 IPR001162 UvrC family homology region HCD_05765 c4af2fb03fd7157b75c1c37fa63e4fd3 597 SMART SM00465 14 103 4.1E-22 T 13-10-2018 IPR000305 GIY-YIG endonuclease HCD_05765 c4af2fb03fd7157b75c1c37fa63e4fd3 597 SUPERFAMILY SSF47781 520 585 7.63E-9 T 13-10-2018 IPR010994 RuvA domain 2-like HCD_05765 c4af2fb03fd7157b75c1c37fa63e4fd3 597 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 7 585 3.5E-197 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 HCD_08055 b5951e6c84d06295b3a698fb0267634d 260 SUPERFAMILY SSF110997 191 253 1.02E-7 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 HCD_08055 b5951e6c84d06295b3a698fb0267634d 260 Pfam PF05036 Sporulation related domain 191 248 4.8E-8 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 HCD_01690 311e6677c21c6520081495cbb205ef73 409 Gene3D G3DSA:3.40.50.2000 25 384 6.3E-72 T 13-10-2018 HCD_01690 311e6677c21c6520081495cbb205ef73 409 Gene3D G3DSA:3.40.50.2000 213 376 6.3E-72 T 13-10-2018 HCD_01690 311e6677c21c6520081495cbb205ef73 409 TIGRFAM TIGR03568 NeuC_NnaA: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing 24 388 4.3E-123 T 13-10-2018 IPR020004 UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing GO:0004553|GO:0006047 Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 HCD_01690 311e6677c21c6520081495cbb205ef73 409 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 58 389 2.7E-75 T 13-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 HCD_01690 311e6677c21c6520081495cbb205ef73 409 SUPERFAMILY SSF53756 24 389 3.87E-82 T 13-10-2018 HCD_08375 80ce17c272f499a3d3c6a6872bafb9a8 221 PIRSF PIRSF009320 1 221 1.2E-36 T 13-10-2018 HCD_08375 80ce17c272f499a3d3c6a6872bafb9a8 221 SUPERFAMILY SSF52540 1 216 3.27E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_08375 80ce17c272f499a3d3c6a6872bafb9a8 221 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 3 188 2.5E-13 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain HCD_08375 80ce17c272f499a3d3c6a6872bafb9a8 221 Gene3D G3DSA:3.40.50.300 1 213 1.2E-42 T 13-10-2018 HCD_00030 eaad4009709c3cc9564133ed316741b6 279 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 23 71 1.1E-8 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 HCD_00030 eaad4009709c3cc9564133ed316741b6 279 SUPERFAMILY SSF52374 1 279 1.13E-92 T 13-10-2018 HCD_00030 eaad4009709c3cc9564133ed316741b6 279 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 279 2.4E-117 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 HCD_00030 eaad4009709c3cc9564133ed316741b6 279 Pfam PF02569 Pantoate-beta-alanine ligase 3 277 3.0E-93 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 HCD_00030 eaad4009709c3cc9564133ed316741b6 279 Gene3D G3DSA:3.30.1300.10 180 279 1.4E-23 T 13-10-2018 HCD_00030 eaad4009709c3cc9564133ed316741b6 279 Gene3D G3DSA:3.40.50.620 1 179 3.2E-70 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_00030 eaad4009709c3cc9564133ed316741b6 279 Hamap MF_00158 Pantothenate synthetase [panC]. 2 279 36.473 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 HCD_05910 542496a3c68c86204608e03f23d02edf 180 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 106 116 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 HCD_05910 542496a3c68c86204608e03f23d02edf 180 Gene3D G3DSA:3.30.1130.10 49 180 1.3E-55 T 13-10-2018 HCD_05910 542496a3c68c86204608e03f23d02edf 180 SUPERFAMILY SSF55620 1 179 2.15E-69 T 13-10-2018 HCD_05910 542496a3c68c86204608e03f23d02edf 180 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 1 179 1.3E-86 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 HCD_05910 542496a3c68c86204608e03f23d02edf 180 Gene3D G3DSA:1.10.286.10 1 47 6.9E-15 T 13-10-2018 HCD_05910 542496a3c68c86204608e03f23d02edf 180 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 1 179 35.449 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 HCD_05910 542496a3c68c86204608e03f23d02edf 180 Pfam PF01227 GTP cyclohydrolase I 2 178 3.6E-73 T 13-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 HCD_08030 bd020100603b56dc36b76cfd430c7d56 376 Pfam PF07687 Peptidase dimerisation domain 178 281 8.7E-13 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain HCD_08030 bd020100603b56dc36b76cfd430c7d56 376 Pfam PF01546 Peptidase family M20/M25/M40 70 372 5.9E-34 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 HCD_08030 bd020100603b56dc36b76cfd430c7d56 376 Gene3D G3DSA:3.40.630.10 7 363 2.0E-91 T 13-10-2018 HCD_08030 bd020100603b56dc36b76cfd430c7d56 376 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 1 376 42.671 T 13-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 HCD_08030 bd020100603b56dc36b76cfd430c7d56 376 Gene3D G3DSA:3.30.70.360 182 293 2.0E-91 T 13-10-2018 HCD_08030 bd020100603b56dc36b76cfd430c7d56 376 SUPERFAMILY SSF53187 3 375 1.76E-49 T 13-10-2018 HCD_08030 bd020100603b56dc36b76cfd430c7d56 376 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 103 138 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 HCD_08030 bd020100603b56dc36b76cfd430c7d56 376 SUPERFAMILY SSF55031 182 286 1.36E-19 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain HCD_08030 bd020100603b56dc36b76cfd430c7d56 376 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 4 374 7.1E-123 T 13-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 Pfam PF00013 KH domain 553 610 7.7E-9 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 SUPERFAMILY SSF55666 144 227 6.94E-16 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 Gene3D G3DSA:3.30.1370.10 547 618 2.4E-12 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 PIRSF PIRSF005499 1 688 8.4E-246 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 1 688 24.471 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 250 318 4.1E-5 T 13-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 18 685 2.2E-199 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 SUPERFAMILY SSF54211 9 139 5.06E-36 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 Pfam PF01138 3' exoribonuclease family, domain 1 20 139 1.7E-18 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 Pfam PF01138 3' exoribonuclease family, domain 1 322 453 2.3E-15 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 SUPERFAMILY SSF55666 448 542 4.84E-22 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 SMART SM00316 624 688 4.6E-9 T 13-10-2018 IPR022967 RNA-binding domain, S1 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 Gene3D G3DSA:3.30.230.70 240 546 7.4E-89 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 SUPERFAMILY SSF54791 524 615 6.43E-14 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 SMART SM00322 549 614 7.7E-11 T 13-10-2018 IPR004087 K Homology domain GO:0003676 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 SUPERFAMILY SSF54211 295 485 2.73E-37 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 Gene3D G3DSA:2.40.50.140 624 688 7.7E-9 T 13-10-2018 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 SUPERFAMILY SSF50249 614 685 2.12E-8 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 Pfam PF03725 3' exoribonuclease family, domain 2 457 527 7.5E-6 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 Pfam PF03725 3' exoribonuclease family, domain 2 145 211 5.1E-14 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 Gene3D G3DSA:3.30.230.70 2 226 9.5E-62 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 HCD_02945 bee4ec01e7b939402344906c5aac2c8b 688 SUPERFAMILY SSF46915 242 319 1.78E-7 T 13-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 HCD_04320 87f1bb0b44239f1b8c3335da943cb54d 188 Gene3D G3DSA:3.40.50.1950 1 187 3.8E-63 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 HCD_04320 87f1bb0b44239f1b8c3335da943cb54d 188 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 1 186 30.65 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like HCD_04320 87f1bb0b44239f1b8c3335da943cb54d 188 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 2 184 5.2E-50 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like HCD_04320 87f1bb0b44239f1b8c3335da943cb54d 188 Pfam PF02441 Flavoprotein 1 165 1.1E-21 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 HCD_04320 87f1bb0b44239f1b8c3335da943cb54d 188 SUPERFAMILY SSF52507 1 185 3.01E-50 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 HCD_08495 501aa6c3e8235a63132a13b188a2070f 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 216 1.0E-13 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 HCD_08495 501aa6c3e8235a63132a13b188a2070f 217 Gene3D G3DSA:1.10.3720.10 1 215 3.6E-40 T 13-10-2018 IPR035906 MetI-like superfamily HCD_08495 501aa6c3e8235a63132a13b188a2070f 217 SUPERFAMILY SSF161098 14 204 3.92E-32 T 13-10-2018 IPR035906 MetI-like superfamily HCD_08495 501aa6c3e8235a63132a13b188a2070f 217 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 104 8.0E-22 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 5 293 8.5E-122 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 PIRSF PIRSF036480 1 293 8.5E-108 T 13-10-2018 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 SUPERFAMILY SSF55021 4 54 1.25E-6 T 13-10-2018 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 SUPERFAMILY SSF53328 95 293 1.26E-54 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 Pfam PF00551 Formyl transferase 94 274 2.5E-37 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 Gene3D G3DSA:3.40.50.170 93 293 8.5E-64 T 13-10-2018 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 Gene3D G3DSA:3.30.70.260 2 91 8.3E-13 T 13-10-2018 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 267 292 1.4E-55 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 245 267 1.4E-55 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 1.4E-55 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 117 144 1.4E-55 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 95 117 1.4E-55 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 1.4E-55 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 HCD_00860 75d3f61db8aa01c4cb9ea0c9d6befc88 293 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 293 42.013 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 HCD_03740 7835aa4f7a0e66c9f81701341204daa3 217 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 7 170 4.3E-41 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 HCD_03740 7835aa4f7a0e66c9f81701341204daa3 217 SUPERFAMILY SSF52540 7 167 5.21E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_03740 7835aa4f7a0e66c9f81701341204daa3 217 Pfam PF01926 50S ribosome-binding GTPase 27 138 7.6E-18 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_03740 7835aa4f7a0e66c9f81701341204daa3 217 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 12 203 23.818 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 HCD_03740 7835aa4f7a0e66c9f81701341204daa3 217 Gene3D G3DSA:3.40.50.300 1 207 2.6E-36 T 13-10-2018 HCD_07065 34e67aeac6b7045c7a2d5fa68d4d3609 561 SUPERFAMILY SSF56752 334 559 9.94E-24 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 HCD_07065 34e67aeac6b7045c7a2d5fa68d4d3609 561 Pfam PF01063 Amino-transferase class IV 364 557 1.2E-21 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 HCD_07065 34e67aeac6b7045c7a2d5fa68d4d3609 561 Gene3D G3DSA:3.60.120.10 10 357 1.1E-91 T 13-10-2018 IPR005801 ADC synthase GO:0009058 HCD_07065 34e67aeac6b7045c7a2d5fa68d4d3609 561 Gene3D G3DSA:3.30.470.10 358 427 2.4E-7 T 13-10-2018 HCD_07065 34e67aeac6b7045c7a2d5fa68d4d3609 561 PRINTS PR00095 Anthranilate synthase component I signature 293 307 3.5E-7 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 HCD_07065 34e67aeac6b7045c7a2d5fa68d4d3609 561 PRINTS PR00095 Anthranilate synthase component I signature 199 212 3.5E-7 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 HCD_07065 34e67aeac6b7045c7a2d5fa68d4d3609 561 PRINTS PR00095 Anthranilate synthase component I signature 213 226 3.5E-7 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 HCD_07065 34e67aeac6b7045c7a2d5fa68d4d3609 561 Pfam PF00425 chorismate binding enzyme 94 352 3.0E-77 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal HCD_07065 34e67aeac6b7045c7a2d5fa68d4d3609 561 SUPERFAMILY SSF56322 22 361 1.07E-87 T 13-10-2018 IPR005801 ADC synthase GO:0009058 HCD_07065 34e67aeac6b7045c7a2d5fa68d4d3609 561 Gene3D G3DSA:3.20.10.10 429 558 2.0E-24 T 13-10-2018 HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 Pfam PF00154 recA bacterial DNA recombination protein 9 271 4.1E-142 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 PRINTS PR00142 RecA protein signature 300 317 2.1E-82 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 PRINTS PR00142 RecA protein signature 246 275 2.1E-82 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 PRINTS PR00142 RecA protein signature 129 158 2.1E-82 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 PRINTS PR00142 RecA protein signature 95 124 2.1E-82 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 PRINTS PR00142 RecA protein signature 167 196 2.1E-82 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 PRINTS PR00142 RecA protein signature 213 241 2.1E-82 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 SUPERFAMILY SSF54752 271 329 1.44E-18 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 6 327 3.8E-172 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 SUPERFAMILY SSF52540 6 270 4.75E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 ProSitePatterns PS00321 recA signature. 216 224 - T 13-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 Hamap MF_00268 Protein RecA [recA]. 7 332 50.895 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 Gene3D G3DSA:3.40.50.300 28 270 9.1E-84 T 13-10-2018 HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 Gene3D G3DSA:3.30.250.10 271 344 4.7E-24 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal HCD_03165 c68f1ab4d893f8701659bcbda9edf571 347 SMART SM00382 59 231 8.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_04305 c3bc79db30fc36588ca7bdddc5c45c91 191 SUPERFAMILY SSF53271 120 188 4.97E-9 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like HCD_04305 c3bc79db30fc36588ca7bdddc5c45c91 191 Gene3D G3DSA:3.40.50.2020 63 191 1.9E-6 T 13-10-2018 HCD_07505 f1baf052c208abce4324912799681b74 188 Pfam PF00692 dUTPase 76 181 1.3E-8 T 13-10-2018 IPR029054 dUTPase-like HCD_07505 f1baf052c208abce4324912799681b74 188 SUPERFAMILY SSF51283 3 187 3.93E-49 T 13-10-2018 IPR036157 dUTPase-like superfamily HCD_07505 f1baf052c208abce4324912799681b74 188 Gene3D G3DSA:2.70.40.10 1 157 1.3E-48 T 13-10-2018 IPR036157 dUTPase-like superfamily HCD_07505 f1baf052c208abce4324912799681b74 188 Hamap MF_00146 dCTP deaminase [dcd]. 1 186 28.793 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 HCD_07505 f1baf052c208abce4324912799681b74 188 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 3 186 1.3E-52 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 HCD_05465 9aa1de73c5d5e11a239645b6a913c691 149 SUPERFAMILY SSF55658 1 54 3.49E-16 T 13-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal HCD_05465 9aa1de73c5d5e11a239645b6a913c691 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 46 5.5E-20 T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_05465 9aa1de73c5d5e11a239645b6a913c691 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 65 147 8.1E-21 T 13-10-2018 IPR020069 Ribosomal protein L9, C-terminal HCD_05465 9aa1de73c5d5e11a239645b6a913c691 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 149 7.7E-51 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_05465 9aa1de73c5d5e11a239645b6a913c691 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_05465 9aa1de73c5d5e11a239645b6a913c691 149 Gene3D G3DSA:3.40.5.10 1 62 2.9E-19 T 13-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_05465 9aa1de73c5d5e11a239645b6a913c691 149 SUPERFAMILY SSF55653 60 148 3.14E-19 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily HCD_05465 9aa1de73c5d5e11a239645b6a913c691 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 22.247 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_05465 9aa1de73c5d5e11a239645b6a913c691 149 Gene3D G3DSA:3.10.430.100 63 149 2.5E-21 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily HCD_03480 879eef88fe3eb261f8efe86f1134454c 676 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 528 664 1.6E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_03480 879eef88fe3eb261f8efe86f1134454c 676 Gene3D G3DSA:3.30.450.20 171 306 6.9E-9 T 13-10-2018 HCD_03480 879eef88fe3eb261f8efe86f1134454c 676 SUPERFAMILY SSF58104 363 673 7.19E-50 T 13-10-2018 HCD_03480 879eef88fe3eb261f8efe86f1134454c 676 Gene3D G3DSA:1.10.287.950 388 675 9.4E-52 T 13-10-2018 HCD_03480 879eef88fe3eb261f8efe86f1134454c 676 SMART SM00283 459 675 3.3E-24 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_06770 d75cb2038afb07ab4ff9599964ec5b9e 560 Gene3D G3DSA:1.10.530.10 394 544 3.2E-30 T 13-10-2018 HCD_06770 d75cb2038afb07ab4ff9599964ec5b9e 560 SUPERFAMILY SSF53955 402 542 2.03E-34 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily HCD_06770 d75cb2038afb07ab4ff9599964ec5b9e 560 Pfam PF01464 Transglycosylase SLT domain 396 506 6.0E-27 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 Gene3D G3DSA:3.40.50.300 424 633 2.3E-64 T 13-10-2018 HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 15 49 7.4E-5 T 13-10-2018 IPR004176 Clp, N-terminal HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 SMART SM00382 192 337 2.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 SMART SM00382 471 635 9.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 SUPERFAMILY SSF81923 4 135 6.28E-13 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 SUPERFAMILY SSF52540 153 400 4.63E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 517 535 8.5E-33 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 475 493 8.5E-33 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 546 564 8.5E-33 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 579 593 8.5E-33 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 634 712 2.2E-15 T 13-10-2018 IPR019489 Clp ATPase, C-terminal HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 Gene3D G3DSA:1.10.8.60 342 417 4.5E-23 T 13-10-2018 HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 SMART SM01086 634 723 6.5E-15 T 13-10-2018 IPR019489 Clp ATPase, C-terminal HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 SUPERFAMILY SSF52540 420 713 9.58E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 Gene3D G3DSA:3.40.50.300 152 341 5.1E-64 T 13-10-2018 HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 Pfam PF07724 AAA domain (Cdc48 subfamily) 470 628 1.1E-39 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 288 300 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 197 302 3.1E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 Gene3D G3DSA:1.10.8.60 634 729 4.8E-15 T 13-10-2018 HCD_00115 42f60b9714fff7ebeec416b9da20160d 737 Gene3D G3DSA:1.10.1780.10 4 137 3.7E-16 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 HCD_06480 169a30c2d22a94012eb49565196eed8f 282 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 272 1.7E-60 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 HCD_06480 169a30c2d22a94012eb49565196eed8f 282 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 154 166 - T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 HCD_06480 169a30c2d22a94012eb49565196eed8f 282 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 280 8.5E-96 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 HCD_06480 169a30c2d22a94012eb49565196eed8f 282 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 277 18.47 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 HCD_00200 831ddcf5df4bb2a79129c1012f10017e 350 Pfam PF03054 tRNA methyl transferase 7 114 3.0E-7 T 13-10-2018 HCD_00200 831ddcf5df4bb2a79129c1012f10017e 350 SUPERFAMILY SSF52402 5 244 9.7E-27 T 13-10-2018 HCD_00200 831ddcf5df4bb2a79129c1012f10017e 350 Gene3D G3DSA:3.40.50.620 3 149 1.1E-30 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_04000 1e4d81235719bf9ca6dd11044aa98f99 178 Gene3D G3DSA:3.90.930.12 83 178 1.7E-38 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04000 1e4d81235719bf9ca6dd11044aa98f99 178 Gene3D G3DSA:3.90.930.12 1 82 2.2E-18 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04000 1e4d81235719bf9ca6dd11044aa98f99 178 PIRSF PIRSF002162 1 176 1.3E-46 T 13-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04000 1e4d81235719bf9ca6dd11044aa98f99 178 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 153 161 - T 13-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04000 1e4d81235719bf9ca6dd11044aa98f99 178 SUPERFAMILY SSF56053 2 82 4.32E-17 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04000 1e4d81235719bf9ca6dd11044aa98f99 178 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 175 33.128 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 HCD_04000 1e4d81235719bf9ca6dd11044aa98f99 178 PRINTS PR00059 Ribosomal protein L6 signature 71 96 3.3E-31 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 HCD_04000 1e4d81235719bf9ca6dd11044aa98f99 178 PRINTS PR00059 Ribosomal protein L6 signature 140 161 3.3E-31 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 HCD_04000 1e4d81235719bf9ca6dd11044aa98f99 178 PRINTS PR00059 Ribosomal protein L6 signature 99 115 3.3E-31 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 HCD_04000 1e4d81235719bf9ca6dd11044aa98f99 178 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 175 2.2E-67 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 HCD_04000 1e4d81235719bf9ca6dd11044aa98f99 178 SUPERFAMILY SSF56053 83 175 1.14E-34 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04000 1e4d81235719bf9ca6dd11044aa98f99 178 Pfam PF00347 Ribosomal protein L6 91 163 1.1E-19 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04000 1e4d81235719bf9ca6dd11044aa98f99 178 Pfam PF00347 Ribosomal protein L6 11 82 9.9E-6 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_07760 9eda84a358b89e252dc4ac5dbd9889cd 456 Gene3D G3DSA:3.30.1330.90 12 159 1.5E-47 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 HCD_07760 9eda84a358b89e252dc4ac5dbd9889cd 456 SUPERFAMILY SSF143548 18 157 2.04E-38 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 HCD_07760 9eda84a358b89e252dc4ac5dbd9889cd 456 Pfam PF03315 Serine dehydratase beta chain 5 155 1.6E-48 T 13-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 HCD_07760 9eda84a358b89e252dc4ac5dbd9889cd 456 Pfam PF03313 Serine dehydratase alpha chain 186 450 4.3E-85 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit HCD_07760 9eda84a358b89e252dc4ac5dbd9889cd 456 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 4 452 2.6E-197 T 13-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 HCD_02655 5e302b68f4fcfc531467f8b636b0a2b8 274 Gene3D G3DSA:3.40.1010.20 5 268 4.6E-92 T 13-10-2018 HCD_02655 5e302b68f4fcfc531467f8b636b0a2b8 274 Pfam PF02401 LytB protein 3 271 1.1E-88 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 HCD_02655 5e302b68f4fcfc531467f8b636b0a2b8 274 Gene3D G3DSA:3.40.1010.20 92 188 4.6E-92 T 13-10-2018 HCD_02655 5e302b68f4fcfc531467f8b636b0a2b8 274 Gene3D G3DSA:3.40.50.11270 12 91 4.6E-92 T 13-10-2018 HCD_02655 5e302b68f4fcfc531467f8b636b0a2b8 274 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 274 31.294 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 HCD_02655 5e302b68f4fcfc531467f8b636b0a2b8 274 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 273 2.5E-93 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 HCD_04705 03dc8c10c7120a7092da1b266a37599f 217 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 130 152 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 HCD_04705 03dc8c10c7120a7092da1b266a37599f 217 PIRSF PIRSF001461 1 217 3.2E-88 T 13-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 HCD_04705 03dc8c10c7120a7092da1b266a37599f 217 Gene3D G3DSA:3.20.20.70 1 215 3.0E-70 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_04705 03dc8c10c7120a7092da1b266a37599f 217 SUPERFAMILY SSF51366 2 211 1.36E-60 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 HCD_04705 03dc8c10c7120a7092da1b266a37599f 217 Pfam PF00834 Ribulose-phosphate 3 epimerase family 2 197 4.6E-79 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 HCD_04705 03dc8c10c7120a7092da1b266a37599f 217 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 2 210 6.7E-87 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 HCD_04705 03dc8c10c7120a7092da1b266a37599f 217 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 28 42 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 HCD_07530 b4240c38cae2329a50221eddb16960b1 221 SUPERFAMILY SSF52833 76 193 2.81E-16 T 13-10-2018 IPR036249 Thioredoxin-like superfamily HCD_07530 b4240c38cae2329a50221eddb16960b1 221 Pfam PF13098 Thioredoxin-like domain 75 184 5.6E-24 T 13-10-2018 IPR012336 Thioredoxin-like fold HCD_07530 b4240c38cae2329a50221eddb16960b1 221 Gene3D G3DSA:3.40.30.10 55 221 9.9E-44 T 13-10-2018 HCD_07200 33da539dd01b3d3cfc28db4159372acf 822 Pfam PF00669 Bacterial flagellin N-terminal helical region 9 139 3.8E-14 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 HCD_07200 33da539dd01b3d3cfc28db4159372acf 822 SUPERFAMILY SSF64518 1 822 6.41E-44 T 13-10-2018 HCD_07200 33da539dd01b3d3cfc28db4159372acf 822 Gene3D G3DSA:1.20.1330.10 45 218 3.9E-26 T 13-10-2018 HCD_00855 b4b321b1ee047d8f9fba41d212ccae88 292 Gene3D G3DSA:3.40.1750.20 145 211 4.0E-56 T 13-10-2018 HCD_00855 b4b321b1ee047d8f9fba41d212ccae88 292 SUPERFAMILY SSF52096 31 241 4.56E-32 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily HCD_00855 b4b321b1ee047d8f9fba41d212ccae88 292 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 49 254 1.1E-79 T 13-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 HCD_00855 b4b321b1ee047d8f9fba41d212ccae88 292 Pfam PF01343 Peptidase family S49 105 256 1.4E-53 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 HCD_00855 b4b321b1ee047d8f9fba41d212ccae88 292 Gene3D G3DSA:3.90.226.10 55 247 4.0E-56 T 13-10-2018 HCD_02650 2494f494015cc611b4981c7b14720975 427 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 10 424 5.4E-126 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 HCD_02650 2494f494015cc611b4981c7b14720975 427 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 1 426 29.427 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 HCD_02650 2494f494015cc611b4981c7b14720975 427 SUPERFAMILY SSF55205 11 423 3.27E-104 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 HCD_02650 2494f494015cc611b4981c7b14720975 427 ProSitePatterns PS00104 EPSP synthase signature 1. 78 92 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 HCD_02650 2494f494015cc611b4981c7b14720975 427 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 10 419 1.1E-103 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 HCD_02650 2494f494015cc611b4981c7b14720975 427 Gene3D G3DSA:3.65.10.10 13 221 1.2E-116 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 HCD_02650 2494f494015cc611b4981c7b14720975 427 PIRSF PIRSF000505 8 426 8.8E-99 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 HCD_02650 2494f494015cc611b4981c7b14720975 427 Gene3D G3DSA:3.65.10.10 11 418 1.2E-116 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 HCD_05290 a74621f063fdc5c479165bf9622569c2 392 Pfam PF09312 SurA N-terminal domain 159 237 1.5E-10 T 13-10-2018 IPR015391 SurA N-terminal HCD_05290 a74621f063fdc5c479165bf9622569c2 392 Gene3D G3DSA:1.10.4030.30 140 391 7.4E-80 T 13-10-2018 HCD_05290 a74621f063fdc5c479165bf9622569c2 392 Gene3D G3DSA:3.10.50.40 268 349 7.4E-80 T 13-10-2018 HCD_05290 a74621f063fdc5c479165bf9622569c2 392 SUPERFAMILY SSF109998 138 274 1.04E-20 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily HCD_01255 f6df0ff529dc31180375300813143d55 433 SMART SM00283 113 319 2.8E-25 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_01255 f6df0ff529dc31180375300813143d55 433 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 159 295 6.9E-38 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_01255 f6df0ff529dc31180375300813143d55 433 SUPERFAMILY SSF58104 124 286 4.19E-49 T 13-10-2018 HCD_01255 f6df0ff529dc31180375300813143d55 433 Pfam PF13682 Chemoreceptor zinc-binding domain 315 379 1.7E-12 T 13-10-2018 IPR025991 Chemoreceptor zinc-binding domain HCD_01255 f6df0ff529dc31180375300813143d55 433 Gene3D G3DSA:1.20.120.30 320 417 8.6E-7 T 13-10-2018 HCD_01255 f6df0ff529dc31180375300813143d55 433 Gene3D G3DSA:1.10.287.950 110 306 3.9E-50 T 13-10-2018 HCD_01255 f6df0ff529dc31180375300813143d55 433 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 196 223 2.3E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 HCD_01255 f6df0ff529dc31180375300813143d55 433 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 225 254 2.3E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 HCD_06455 282aa78f7f78b99801d044a6dee9a850 844 Gene3D G3DSA:1.10.10.10 776 841 6.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_06455 282aa78f7f78b99801d044a6dee9a850 844 Pfam PF01580 FtsK/SpoIIIE family 492 633 9.0E-50 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 HCD_06455 282aa78f7f78b99801d044a6dee9a850 844 SMART SM00843 780 844 1.5E-19 T 13-10-2018 IPR018541 FtsK gamma domain HCD_06455 282aa78f7f78b99801d044a6dee9a850 844 Gene3D G3DSA:3.40.50.300 489 767 1.6E-106 T 13-10-2018 HCD_06455 282aa78f7f78b99801d044a6dee9a850 844 SUPERFAMILY SSF46785 780 843 1.28E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily HCD_06455 282aa78f7f78b99801d044a6dee9a850 844 Gene3D G3DSA:3.30.980.40 384 488 2.3E-30 T 13-10-2018 HCD_06455 282aa78f7f78b99801d044a6dee9a850 844 SMART SM00382 527 703 0.007 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_06455 282aa78f7f78b99801d044a6dee9a850 844 SUPERFAMILY SSF52540 466 755 2.34E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_06455 282aa78f7f78b99801d044a6dee9a850 844 Pfam PF09397 Ftsk gamma domain 782 841 1.7E-19 T 13-10-2018 IPR018541 FtsK gamma domain HCD_01045 d573b8c0e78493f47be86ee33bd0e7c0 938 Gene3D G3DSA:3.30.190.20 131 240 1.7E-217 T 13-10-2018 HCD_01045 d573b8c0e78493f47be86ee33bd0e7c0 938 Gene3D G3DSA:3.40.50.300 608 931 2.4E-131 T 13-10-2018 HCD_01045 d573b8c0e78493f47be86ee33bd0e7c0 938 SUPERFAMILY SSF52540 12 563 3.02E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01045 d573b8c0e78493f47be86ee33bd0e7c0 938 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 4 917 0.0 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 HCD_01045 d573b8c0e78493f47be86ee33bd0e7c0 938 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_01045 d573b8c0e78493f47be86ee33bd0e7c0 938 Gene3D G3DSA:1.10.8.280 289 393 1.7E-217 T 13-10-2018 HCD_01045 d573b8c0e78493f47be86ee33bd0e7c0 938 SUPERFAMILY SSF52540 607 902 3.27E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01045 d573b8c0e78493f47be86ee33bd0e7c0 938 Gene3D G3DSA:1.20.1580.10 684 822 2.4E-131 T 13-10-2018 HCD_01045 d573b8c0e78493f47be86ee33bd0e7c0 938 Gene3D G3DSA:1.20.1580.10 91 486 1.7E-217 T 13-10-2018 HCD_01045 d573b8c0e78493f47be86ee33bd0e7c0 938 Gene3D G3DSA:3.40.50.300 6 587 1.7E-217 T 13-10-2018 HCD_01045 d573b8c0e78493f47be86ee33bd0e7c0 938 ProSitePatterns PS00211 ABC transporters family signature. 822 836 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_04965 87c1512461c517b2194fc0e37689ab33 353 Gene3D G3DSA:1.10.760.10 206 332 2.8E-91 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_04965 87c1512461c517b2194fc0e37689ab33 353 Pfam PF00034 Cytochrome c 227 314 1.9E-6 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_04965 87c1512461c517b2194fc0e37689ab33 353 PIRSF PIRSF000294 28 353 4.2E-119 T 13-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 HCD_04965 87c1512461c517b2194fc0e37689ab33 353 SUPERFAMILY SSF46626 206 350 3.77E-29 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_04965 87c1512461c517b2194fc0e37689ab33 353 SUPERFAMILY SSF46626 62 207 1.33E-41 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_04965 87c1512461c517b2194fc0e37689ab33 353 Gene3D G3DSA:1.10.760.10 66 205 2.8E-91 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_04965 87c1512461c517b2194fc0e37689ab33 353 Pfam PF03150 Di-haem cytochrome c peroxidase 69 218 6.3E-41 T 13-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 HCD_02670 5aca854ce33624419d04433f2e76152e 524 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 3 522 1.9E-211 T 13-10-2018 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|Reactome: R-HSA-977347 HCD_02670 5aca854ce33624419d04433f2e76152e 524 SUPERFAMILY SSF143548 322 447 1.26E-31 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 HCD_02670 5aca854ce33624419d04433f2e76152e 524 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 314 8.1E-33 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 HCD_02670 5aca854ce33624419d04433f2e76152e 524 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 282 1.5E-54 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 HCD_02670 5aca854ce33624419d04433f2e76152e 524 Gene3D G3DSA:3.30.70.260 452 524 3.5E-14 T 13-10-2018 HCD_02670 5aca854ce33624419d04433f2e76152e 524 Gene3D G3DSA:3.30.1330.90 318 451 3.4E-33 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 HCD_02670 5aca854ce33624419d04433f2e76152e 524 SUPERFAMILY SSF52283 23 125 1.72E-30 T 13-10-2018 HCD_02670 5aca854ce33624419d04433f2e76152e 524 Pfam PF01842 ACT domain 453 514 5.4E-8 T 13-10-2018 IPR002912 ACT domain HCD_02670 5aca854ce33624419d04433f2e76152e 524 Gene3D G3DSA:3.40.50.720 94 284 2.4E-100 T 13-10-2018 HCD_02670 5aca854ce33624419d04433f2e76152e 524 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 145 172 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 HCD_02670 5aca854ce33624419d04433f2e76152e 524 Gene3D G3DSA:3.40.50.720 4 293 2.4E-100 T 13-10-2018 HCD_02670 5aca854ce33624419d04433f2e76152e 524 SUPERFAMILY SSF55021 441 520 5.34E-15 T 13-10-2018 HCD_02670 5aca854ce33624419d04433f2e76152e 524 SUPERFAMILY SSF51735 98 283 3.95E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_04355 c0da5c0289fa7b2b446b7727fc030712 253 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 22 251 7.9E-73 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 HCD_04355 c0da5c0289fa7b2b446b7727fc030712 253 SUPERFAMILY SSF53335 9 239 3.07E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_04355 c0da5c0289fa7b2b446b7727fc030712 253 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 33 48 - T 13-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 HCD_04355 c0da5c0289fa7b2b446b7727fc030712 253 Pfam PF01209 ubiE/COQ5 methyltransferase family 17 240 3.1E-43 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 HCD_04355 c0da5c0289fa7b2b446b7727fc030712 253 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 13 252 29.559 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 HCD_04355 c0da5c0289fa7b2b446b7727fc030712 253 Gene3D G3DSA:3.40.50.150 28 252 1.2E-47 T 13-10-2018 HCD_04480 b08624a454d6dd9c419de3120eeb8d07 238 Gene3D G3DSA:3.40.50.150 1 231 8.9E-41 T 13-10-2018 HCD_04480 b08624a454d6dd9c419de3120eeb8d07 238 SUPERFAMILY SSF53335 19 152 3.66E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_04480 b08624a454d6dd9c419de3120eeb8d07 238 Pfam PF05175 Methyltransferase small domain 31 114 2.2E-13 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 HCD_04480 b08624a454d6dd9c419de3120eeb8d07 238 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 103 109 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_07855 6ebeaa8289842febf91c9d1c96a8fbd7 369 Gene3D G3DSA:3.40.50.2000 5 159 1.9E-75 T 13-10-2018 HCD_07855 6ebeaa8289842febf91c9d1c96a8fbd7 369 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 3 142 1.0E-31 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_07855 6ebeaa8289842febf91c9d1c96a8fbd7 369 SUPERFAMILY SSF53756 1 336 2.74E-82 T 13-10-2018 HCD_07855 6ebeaa8289842febf91c9d1c96a8fbd7 369 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 3 354 27.407 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_07855 6ebeaa8289842febf91c9d1c96a8fbd7 369 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 348 3.0E-87 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_07855 6ebeaa8289842febf91c9d1c96a8fbd7 369 Gene3D G3DSA:3.40.50.2000 160 314 1.9E-75 T 13-10-2018 HCD_07855 6ebeaa8289842febf91c9d1c96a8fbd7 369 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 177 340 1.5E-43 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 HCD_02750 1f9e2362f8f226aea7058acda5b73932 237 Gene3D G3DSA:3.40.50.1580 1 235 2.0E-63 T 13-10-2018 HCD_02750 1f9e2362f8f226aea7058acda5b73932 237 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 1 234 45.079 T 13-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 HCD_02750 1f9e2362f8f226aea7058acda5b73932 237 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 4 234 1.5E-113 T 13-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 HCD_02750 1f9e2362f8f226aea7058acda5b73932 237 SUPERFAMILY SSF53167 1 232 9.43E-79 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 HCD_02750 1f9e2362f8f226aea7058acda5b73932 237 Pfam PF01048 Phosphorylase superfamily 16 228 9.3E-32 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 HCD_02750 1f9e2362f8f226aea7058acda5b73932 237 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 61 76 - T 13-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 HCD_07875 dd1d18311905404f5faf1f3b45bf165f 76 Pfam PF00886 Ribosomal protein S16 8 66 4.2E-24 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07875 dd1d18311905404f5faf1f3b45bf165f 76 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 76 23.084 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07875 dd1d18311905404f5faf1f3b45bf165f 76 Gene3D G3DSA:3.30.1320.10 1 76 4.1E-30 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07875 dd1d18311905404f5faf1f3b45bf165f 76 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 13-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_07875 dd1d18311905404f5faf1f3b45bf165f 76 TIGRFAM TIGR00002 S16: ribosomal protein bS16 4 75 3.9E-29 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07875 dd1d18311905404f5faf1f3b45bf165f 76 SUPERFAMILY SSF54565 1 74 5.49E-28 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01175 14ab031ac925cd4fecd6ec32a6a5281a 178 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 6 151 1.8E-36 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 HCD_01175 14ab031ac925cd4fecd6ec32a6a5281a 178 Gene3D G3DSA:3.40.50.1450 3 165 1.9E-32 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily HCD_01175 14ab031ac925cd4fecd6ec32a6a5281a 178 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 5 156 1.7E-51 T 13-10-2018 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 HCD_01175 14ab031ac925cd4fecd6ec32a6a5281a 178 Pfam PF01750 Hydrogenase maturation protease 22 150 6.9E-33 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 HCD_01175 14ab031ac925cd4fecd6ec32a6a5281a 178 PRINTS PR00446 Hydrogen uptake protein signature 58 68 1.8E-14 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 HCD_01175 14ab031ac925cd4fecd6ec32a6a5281a 178 PRINTS PR00446 Hydrogen uptake protein signature 37 54 1.8E-14 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 HCD_01175 14ab031ac925cd4fecd6ec32a6a5281a 178 PRINTS PR00446 Hydrogen uptake protein signature 5 17 1.8E-14 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 HCD_01175 14ab031ac925cd4fecd6ec32a6a5281a 178 PRINTS PR00446 Hydrogen uptake protein signature 17 28 1.8E-14 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 HCD_01175 14ab031ac925cd4fecd6ec32a6a5281a 178 SUPERFAMILY SSF53163 4 164 3.4E-40 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily HCD_04385 fa676cd787ed1ea259c5153cf9a217af 510 SUPERFAMILY SSF56954 48 499 1.15E-58 T 13-10-2018 HCD_04385 fa676cd787ed1ea259c5153cf9a217af 510 Pfam PF02321 Outer membrane efflux protein 50 291 1.7E-21 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 HCD_04385 fa676cd787ed1ea259c5153cf9a217af 510 Pfam PF02321 Outer membrane efflux protein 320 498 9.0E-25 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 HCD_01570 6eee84fd3cca701687b9d9e6e41edc56 352 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 20 350 23.169 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_01570 6eee84fd3cca701687b9d9e6e41edc56 352 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 62 74 1.2E-5 T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_01570 6eee84fd3cca701687b9d9e6e41edc56 352 ProSitePatterns PS01348 MraY family signature 2. 181 192 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_01570 6eee84fd3cca701687b9d9e6e41edc56 352 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 32 352 3.5E-141 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_01570 6eee84fd3cca701687b9d9e6e41edc56 352 Pfam PF00953 Glycosyl transferase family 4 94 276 1.3E-32 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 HCD_01570 6eee84fd3cca701687b9d9e6e41edc56 352 ProSitePatterns PS01347 MraY family signature 1. 62 74 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_02030 07eeabf7235bef2f513151082239ace6 289 Pfam PF01039 Carboxyl transferase domain 58 242 4.0E-18 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 HCD_02030 07eeabf7235bef2f513151082239ace6 289 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 165 183 1.1E-37 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_02030 07eeabf7235bef2f513151082239ace6 289 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 202 219 1.1E-37 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_02030 07eeabf7235bef2f513151082239ace6 289 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 253 262 1.1E-37 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_02030 07eeabf7235bef2f513151082239ace6 289 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 131 145 1.1E-37 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_02030 07eeabf7235bef2f513151082239ace6 289 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 231 242 1.1E-37 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_02030 07eeabf7235bef2f513151082239ace6 289 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 286 2.6E-145 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_02030 07eeabf7235bef2f513151082239ace6 289 SUPERFAMILY SSF52096 28 281 1.09E-82 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily HCD_02030 07eeabf7235bef2f513151082239ace6 289 Gene3D G3DSA:3.90.226.10 27 287 7.2E-87 T 13-10-2018 HCD_02030 07eeabf7235bef2f513151082239ace6 289 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 4 283 37.893 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_03830 9e62db5457819b340ee54948672dc519 1001 Gene3D G3DSA:3.90.1150.50 878 995 6.7E-20 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain HCD_03830 9e62db5457819b340ee54948672dc519 1001 SMART SM00487 481 666 1.2E-28 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain HCD_03830 9e62db5457819b340ee54948672dc519 1001 Pfam PF02559 CarD-like/TRCF domain 361 455 2.8E-19 T 13-10-2018 IPR003711 CarD-like/TRCF domain HCD_03830 9e62db5457819b340ee54948672dc519 1001 SMART SM00982 882 982 1.9E-26 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 HCD_03830 9e62db5457819b340ee54948672dc519 1001 Gene3D G3DSA:3.40.50.300 423 660 1.6E-194 T 13-10-2018 HCD_03830 9e62db5457819b340ee54948672dc519 1001 SUPERFAMILY SSF52540 532 802 5.7E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_03830 9e62db5457819b340ee54948672dc519 1001 SMART SM00490 699 789 5.6E-18 T 13-10-2018 IPR001650 Helicase, C-terminal HCD_03830 9e62db5457819b340ee54948672dc519 1001 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 309 955 1.5E-279 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 HCD_03830 9e62db5457819b340ee54948672dc519 1001 SUPERFAMILY SSF143517 868 992 2.35E-23 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain HCD_03830 9e62db5457819b340ee54948672dc519 1001 Pfam PF00270 DEAD/DEAH box helicase 486 644 2.9E-14 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 HCD_03830 9e62db5457819b340ee54948672dc519 1001 Pfam PF00271 Helicase conserved C-terminal domain 680 788 1.3E-17 T 13-10-2018 IPR001650 Helicase, C-terminal HCD_03830 9e62db5457819b340ee54948672dc519 1001 SUPERFAMILY SSF52540 16 199 2.66E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_03830 9e62db5457819b340ee54948672dc519 1001 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 7 976 23.798 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 HCD_03830 9e62db5457819b340ee54948672dc519 1001 Gene3D G3DSA:3.40.50.300 359 868 1.6E-194 T 13-10-2018 HCD_03830 9e62db5457819b340ee54948672dc519 1001 Gene3D G3DSA:2.30.30.840 364 422 1.6E-194 T 13-10-2018 HCD_03830 9e62db5457819b340ee54948672dc519 1001 SMART SM01058 360 457 2.9E-35 T 13-10-2018 IPR003711 CarD-like/TRCF domain HCD_03830 9e62db5457819b340ee54948672dc519 1001 SUPERFAMILY SSF141259 356 429 5.36E-18 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily HCD_03830 9e62db5457819b340ee54948672dc519 1001 Pfam PF03461 TRCF domain 883 974 1.3E-18 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 HCD_03830 9e62db5457819b340ee54948672dc519 1001 Gene3D G3DSA:3.30.2060.10 107 191 3.8E-18 T 13-10-2018 HCD_05150 040a8e336f2596043a029d0e060ef00c 337 Gene3D G3DSA:2.40.128.140 34 337 2.0E-50 T 13-10-2018 IPR037107 Putative outer membrane protein superfamily HCD_05150 040a8e336f2596043a029d0e060ef00c 337 Pfam PF09982 Uncharacterized protein conserved in bacteria (DUF2219) 38 335 5.1E-66 T 13-10-2018 IPR018707 Protein of unknown function DUF2219 HCD_05390 3a938c5dbf448ce38295dd5f822397ca 176 SMART SM00926 45 99 2.7E-12 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_05390 3a938c5dbf448ce38295dd5f822397ca 176 Pfam PF00384 Molybdopterin oxidoreductase 102 171 2.0E-11 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_05390 3a938c5dbf448ce38295dd5f822397ca 176 SUPERFAMILY SSF53706 44 176 1.57E-45 T 13-10-2018 HCD_05390 3a938c5dbf448ce38295dd5f822397ca 176 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 6 24 3.5E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal HCD_05390 3a938c5dbf448ce38295dd5f822397ca 176 Gene3D G3DSA:2.20.25.90 41 104 4.1E-13 T 13-10-2018 HCD_05390 3a938c5dbf448ce38295dd5f822397ca 176 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 46 96 4.8E-11 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_05390 3a938c5dbf448ce38295dd5f822397ca 176 Gene3D G3DSA:3.40.50.740 108 176 2.5E-18 T 13-10-2018 HCD_04045 2d1aed6c23d6b8ee8411eced02a25f63 234 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 38.441 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 HCD_04045 2d1aed6c23d6b8ee8411eced02a25f63 234 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 13-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04045 2d1aed6c23d6b8ee8411eced02a25f63 234 SUPERFAMILY SSF54814 2 106 1.07E-34 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 HCD_04045 2d1aed6c23d6b8ee8411eced02a25f63 234 SUPERFAMILY SSF54821 107 206 3.14E-39 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04045 2d1aed6c23d6b8ee8411eced02a25f63 234 Gene3D G3DSA:3.30.1140.32 108 208 2.7E-42 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04045 2d1aed6c23d6b8ee8411eced02a25f63 234 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 5.1E-39 T 13-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04045 2d1aed6c23d6b8ee8411eced02a25f63 234 Pfam PF07650 KH domain 38 110 4.6E-18 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04045 2d1aed6c23d6b8ee8411eced02a25f63 234 Gene3D G3DSA:3.30.300.20 17 107 1.0E-27 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta HCD_04045 2d1aed6c23d6b8ee8411eced02a25f63 234 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 210 7.2E-97 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 HCD_04045 2d1aed6c23d6b8ee8411eced02a25f63 234 SMART SM00322 60 125 2.1E-6 T 13-10-2018 IPR004087 K Homology domain GO:0003676 HCD_07260 d1bf4af07f25104144bbc26428379e9b 625 SUPERFAMILY SSF50182 413 479 4.9E-17 T 13-10-2018 IPR010920 LSM domain superfamily HCD_07260 d1bf4af07f25104144bbc26428379e9b 625 Pfam PF00924 Mechanosensitive ion channel 371 604 1.2E-71 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 HCD_07260 d1bf4af07f25104144bbc26428379e9b 625 SUPERFAMILY SSF82861 331 412 1.7E-10 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 HCD_07260 d1bf4af07f25104144bbc26428379e9b 625 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 443 477 - T 13-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 HCD_07260 d1bf4af07f25104144bbc26428379e9b 625 SUPERFAMILY SSF82689 485 614 1.31E-13 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 HCD_07260 d1bf4af07f25104144bbc26428379e9b 625 Gene3D G3DSA:2.30.30.60 429 480 2.1E-14 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily HCD_07260 d1bf4af07f25104144bbc26428379e9b 625 Gene3D G3DSA:3.30.70.100 481 608 8.5E-19 T 13-10-2018 HCD_07010 72cedd07cad953937e7119440881e849 439 Pfam PF00202 Aminotransferase class-III 24 430 4.7E-105 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 HCD_07010 72cedd07cad953937e7119440881e849 439 Gene3D G3DSA:3.40.640.10 65 332 1.8E-140 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 HCD_07010 72cedd07cad953937e7119440881e849 439 Gene3D G3DSA:3.90.1150.10 13 423 1.8E-140 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 HCD_07010 72cedd07cad953937e7119440881e849 439 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 15 430 1.1E-151 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 HCD_07010 72cedd07cad953937e7119440881e849 439 SUPERFAMILY SSF53383 10 430 2.04E-108 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase HCD_07010 72cedd07cad953937e7119440881e849 439 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 242 279 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 HCD_07010 72cedd07cad953937e7119440881e849 439 PIRSF PIRSF000521 19 433 1.4E-29 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 HCD_02300 2f10c43dbd1486ee2386680fd7d0f75d 343 PIRSF PIRSF001455 3 343 5.5E-102 T 13-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 HCD_02300 2f10c43dbd1486ee2386680fd7d0f75d 343 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 20 337 2.1E-109 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 HCD_02300 2f10c43dbd1486ee2386680fd7d0f75d 343 Gene3D G3DSA:1.20.1090.10 163 343 1.4E-65 T 13-10-2018 HCD_02300 2f10c43dbd1486ee2386680fd7d0f75d 343 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 339 63.317 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 HCD_02300 2f10c43dbd1486ee2386680fd7d0f75d 343 Gene3D G3DSA:3.40.50.1970 1 162 7.5E-60 T 13-10-2018 HCD_02300 2f10c43dbd1486ee2386680fd7d0f75d 343 SUPERFAMILY SSF56796 19 340 1.31E-101 T 13-10-2018 HCD_02300 2f10c43dbd1486ee2386680fd7d0f75d 343 Pfam PF01761 3-dehydroquinate synthase 57 308 1.1E-99 T 13-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 HCD_05070 f423e991f0a8284065017cbfefaf202e 734 Gene3D G3DSA:1.10.8.540 541 629 2.9E-21 T 13-10-2018 HCD_05070 f423e991f0a8284065017cbfefaf202e 734 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 165 183 7.9E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 HCD_05070 f423e991f0a8284065017cbfefaf202e 734 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 79 98 7.9E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 HCD_05070 f423e991f0a8284065017cbfefaf202e 734 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 246 260 7.9E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 HCD_05070 f423e991f0a8284065017cbfefaf202e 734 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 195 212 7.9E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 HCD_05070 f423e991f0a8284065017cbfefaf202e 734 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 42 55 7.9E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 HCD_05070 f423e991f0a8284065017cbfefaf202e 734 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 146 162 7.9E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 HCD_05070 f423e991f0a8284065017cbfefaf202e 734 Gene3D G3DSA:3.40.30.60 397 540 6.6E-55 T 13-10-2018 HCD_05070 f423e991f0a8284065017cbfefaf202e 734 PIRSF PIRSF005419 9 734 5.4E-224 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 HCD_05070 f423e991f0a8284065017cbfefaf202e 734 Pfam PF00771 FHIPEP family 35 721 1.8E-244 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 HCD_05070 f423e991f0a8284065017cbfefaf202e 734 Gene3D G3DSA:1.10.490.80 631 730 3.5E-7 T 13-10-2018 HCD_05070 f423e991f0a8284065017cbfefaf202e 734 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 24 730 4.3E-286 T 13-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 HCD_05070 f423e991f0a8284065017cbfefaf202e 734 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 151 174 - T 13-10-2018 IPR025505 FHIPEP conserved site HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 Gene3D G3DSA:1.10.150.20 175 251 3.6E-70 T 13-10-2018 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 SMART SM00482 649 851 3.0E-90 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 ProSitePatterns PS00447 DNA polymerase family A signature. 715 734 - T 13-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 172 264 1.7E-24 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 Pfam PF00476 DNA polymerase family A 520 885 2.3E-117 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 TIGRFAM TIGR00593 pola: DNA polymerase I 11 888 1.6E-280 T 13-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 Gene3D G3DSA:1.10.150.20 673 812 2.3E-80 T 13-10-2018 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 SMART SM00279 174 209 3.0E-13 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 Gene3D G3DSA:1.20.1060.10 512 621 3.3E-32 T 13-10-2018 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 Gene3D G3DSA:3.40.50.1010 12 278 3.6E-70 T 13-10-2018 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 PRINTS PR00868 DNA-polymerase family A (pol I) signature 694 707 4.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 PRINTS PR00868 DNA-polymerase family A (pol I) signature 641 656 4.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 PRINTS PR00868 DNA-polymerase family A (pol I) signature 664 687 4.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 PRINTS PR00868 DNA-polymerase family A (pol I) signature 774 785 4.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 PRINTS PR00868 DNA-polymerase family A (pol I) signature 752 763 4.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 PRINTS PR00868 DNA-polymerase family A (pol I) signature 618 640 4.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 PRINTS PR00868 DNA-polymerase family A (pol I) signature 715 740 4.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 PRINTS PR00868 DNA-polymerase family A (pol I) signature 834 847 4.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 PRINTS PR00868 DNA-polymerase family A (pol I) signature 805 821 4.4E-63 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 SUPERFAMILY SSF56672 494 888 3.78E-118 T 13-10-2018 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 SUPERFAMILY SSF88723 7 171 6.45E-37 T 13-10-2018 IPR029060 PIN-like domain superfamily HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 SUPERFAMILY SSF53098 313 523 2.28E-7 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 SUPERFAMILY SSF47807 172 287 6.88E-24 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 Gene3D G3DSA:3.30.420.10 314 510 1.1E-15 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 SMART SM00475 6 266 1.8E-116 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 Gene3D G3DSA:3.30.70.370 625 884 2.3E-80 T 13-10-2018 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 SMART SM00474 316 487 1.0E-14 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 HCD_04665 ebb0987f4453b3380d43b3c985a0e733 889 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 11 171 8.9E-37 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 HCD_07980 b1e5bec46868fd9eda478f81bb854fcd 350 SUPERFAMILY SSF50129 9 172 3.3E-46 T 13-10-2018 IPR011032 GroES-like superfamily HCD_07980 b1e5bec46868fd9eda478f81bb854fcd 350 Gene3D G3DSA:3.40.50.720 163 315 4.7E-125 T 13-10-2018 HCD_07980 b1e5bec46868fd9eda478f81bb854fcd 350 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 HCD_07980 b1e5bec46868fd9eda478f81bb854fcd 350 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 147 4.0E-27 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 HCD_07980 b1e5bec46868fd9eda478f81bb854fcd 350 Pfam PF00107 Zinc-binding dehydrogenase 189 307 5.6E-14 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 HCD_07980 b1e5bec46868fd9eda478f81bb854fcd 350 SUPERFAMILY SSF51735 153 313 1.72E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_07980 b1e5bec46868fd9eda478f81bb854fcd 350 Gene3D G3DSA:3.90.180.10 24 343 4.7E-125 T 13-10-2018 HCD_06790 3ea991620a2d8f78a8f3b3ccd4fa1b0a 439 Gene3D G3DSA:3.80.30.20 140 370 5.4E-62 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe HCD_06790 3ea991620a2d8f78a8f3b3ccd4fa1b0a 439 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 145 165 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 HCD_06790 3ea991620a2d8f78a8f3b3ccd4fa1b0a 439 Pfam PF04055 Radical SAM superfamily 146 316 7.8E-20 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 HCD_06790 3ea991620a2d8f78a8f3b3ccd4fa1b0a 439 SUPERFAMILY SSF102114 137 362 9.29E-43 T 13-10-2018 HCD_06790 3ea991620a2d8f78a8f3b3ccd4fa1b0a 439 SMART SM00729 141 361 3.1E-42 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 HCD_06790 3ea991620a2d8f78a8f3b3ccd4fa1b0a 439 Pfam PF00919 Uncharacterized protein family UPF0004 10 103 2.1E-26 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 HCD_06790 3ea991620a2d8f78a8f3b3ccd4fa1b0a 439 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 10 410 2.6E-113 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 HCD_06790 3ea991620a2d8f78a8f3b3ccd4fa1b0a 439 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 7 436 56.162 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 HCD_06790 3ea991620a2d8f78a8f3b3ccd4fa1b0a 439 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 11 385 7.7E-98 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 HCD_06790 3ea991620a2d8f78a8f3b3ccd4fa1b0a 439 Gene3D G3DSA:3.40.50.12160 8 139 1.3E-38 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily HCD_07640 ea23d72f550a89b15e1c80187b41a86a 313 Gene3D G3DSA:3.30.450.90 6 113 2.8E-12 T 13-10-2018 HCD_07640 ea23d72f550a89b15e1c80187b41a86a 313 Gene3D G3DSA:3.40.50.300 120 312 1.5E-47 T 13-10-2018 HCD_07640 ea23d72f550a89b15e1c80187b41a86a 313 Pfam PF00437 Type II/IV secretion system protein 20 288 3.0E-45 T 13-10-2018 IPR001482 Type II/IV secretion system protein HCD_07640 ea23d72f550a89b15e1c80187b41a86a 313 SUPERFAMILY SSF52540 13 258 4.25E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01150 8e3bced8bffade900bf46d9dd2b93fbb 227 SUPERFAMILY SSF52402 7 221 7.5E-53 T 13-10-2018 HCD_01150 8e3bced8bffade900bf46d9dd2b93fbb 227 Pfam PF06508 Queuosine biosynthesis protein QueC 6 221 6.4E-75 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 HCD_01150 8e3bced8bffade900bf46d9dd2b93fbb 227 PIRSF PIRSF006293 2 226 2.1E-77 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 HCD_01150 8e3bced8bffade900bf46d9dd2b93fbb 227 Gene3D G3DSA:3.40.50.620 3 226 4.4E-68 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_01150 8e3bced8bffade900bf46d9dd2b93fbb 227 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 6 214 2.8E-80 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 HCD_01150 8e3bced8bffade900bf46d9dd2b93fbb 227 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 4 227 44.829 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 HCD_04640 66ffef1644b7decabc9979aae4f9526f 209 Gene3D G3DSA:3.30.1360.170 1 208 2.3E-73 T 13-10-2018 HCD_04640 66ffef1644b7decabc9979aae4f9526f 209 Hamap MF_01408 Flavin-dependent thymidylate synthase [thyX]. 1 209 22.491 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 HCD_04640 66ffef1644b7decabc9979aae4f9526f 209 SUPERFAMILY SSF69796 1 205 1.23E-42 T 13-10-2018 IPR036098 Thymidylate synthase ThyX superfamily GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 HCD_04640 66ffef1644b7decabc9979aae4f9526f 209 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 8 202 1.4E-50 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 HCD_04640 66ffef1644b7decabc9979aae4f9526f 209 Pfam PF02511 Thymidylate synthase complementing protein 9 194 3.3E-35 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 Gene3D G3DSA:3.20.20.10 12 230 8.2E-119 T 13-10-2018 IPR029066 PLP-binding barrel HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 SUPERFAMILY SSF50621 249 380 1.01E-43 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 SMART SM01005 253 380 1.2E-54 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 PRINTS PR00992 Alanine racemase signature 362 375 1.3E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 PRINTS PR00992 Alanine racemase signature 161 172 1.3E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 PRINTS PR00992 Alanine racemase signature 286 301 1.3E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 PRINTS PR00992 Alanine racemase signature 29 45 1.3E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 PRINTS PR00992 Alanine racemase signature 269 284 1.3E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 PRINTS PR00992 Alanine racemase signature 65 83 1.3E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 PRINTS PR00992 Alanine racemase signature 208 235 1.3E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 PRINTS PR00992 Alanine racemase signature 126 138 1.3E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 PRINTS PR00992 Alanine racemase signature 307 324 1.3E-54 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 Gene3D G3DSA:2.40.37.10 8 379 8.2E-119 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 Hamap MF_01201 Alanine racemase. 3 380 32.697 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 34 44 - T 13-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 Pfam PF00842 Alanine racemase, C-terminal domain 253 379 8.5E-40 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 Pfam PF01168 Alanine racemase, N-terminal domain 10 235 1.1E-63 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 SUPERFAMILY SSF51419 10 240 1.89E-56 T 13-10-2018 IPR029066 PLP-binding barrel HCD_01990 d5c3baf4be7ce582b3cf2ee9fd15737b 380 TIGRFAM TIGR00492 alr: alanine racemase 4 380 6.1E-141 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_04065 c996bb76a92f63bde7c04610e79f3a0a 93 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 4 93 13.728 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 HCD_04065 c996bb76a92f63bde7c04610e79f3a0a 93 Gene3D G3DSA:3.30.70.330 4 93 4.7E-18 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily HCD_04065 c996bb76a92f63bde7c04610e79f3a0a 93 SUPERFAMILY SSF54189 4 90 8.99E-20 T 13-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04065 c996bb76a92f63bde7c04610e79f3a0a 93 Pfam PF00276 Ribosomal protein L23 8 88 1.0E-16 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 HCD_07470 c6af3e358e9a8f64b1337bc7f38cbc4f 405 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 69 81 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 HCD_07470 c6af3e358e9a8f64b1337bc7f38cbc4f 405 Gene3D G3DSA:3.90.120.10 323 388 8.2E-19 T 13-10-2018 HCD_07470 c6af3e358e9a8f64b1337bc7f38cbc4f 405 SUPERFAMILY SSF53335 6 397 1.25E-91 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_07470 c6af3e358e9a8f64b1337bc7f38cbc4f 405 Pfam PF00145 C-5 cytosine-specific DNA methylase 6 397 8.5E-86 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_07470 c6af3e358e9a8f64b1337bc7f38cbc4f 405 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 154 167 2.9E-19 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_07470 c6af3e358e9a8f64b1337bc7f38cbc4f 405 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 108 122 2.9E-19 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_07470 c6af3e358e9a8f64b1337bc7f38cbc4f 405 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 7 23 2.9E-19 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_07470 c6af3e358e9a8f64b1337bc7f38cbc4f 405 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 8 395 8.2E-79 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_07470 c6af3e358e9a8f64b1337bc7f38cbc4f 405 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 377 395 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 HCD_07470 c6af3e358e9a8f64b1337bc7f38cbc4f 405 Gene3D G3DSA:3.40.50.150 9 178 1.8E-74 T 13-10-2018 HCD_07470 c6af3e358e9a8f64b1337bc7f38cbc4f 405 Gene3D G3DSA:3.90.120.10 149 307 1.8E-74 T 13-10-2018 HCD_03075 8667ccd2952bbf0be47498bb61dd6c4b 363 Pfam PF00472 RF-1 domain 229 335 4.1E-42 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 HCD_03075 8667ccd2952bbf0be47498bb61dd6c4b 363 Gene3D G3DSA:3.30.70.1660 129 356 4.2E-95 T 13-10-2018 HCD_03075 8667ccd2952bbf0be47498bb61dd6c4b 363 Pfam PF03462 PCRF domain 29 219 6.8E-60 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 HCD_03075 8667ccd2952bbf0be47498bb61dd6c4b 363 Gene3D G3DSA:1.20.58.410 3 115 7.3E-17 T 13-10-2018 HCD_03075 8667ccd2952bbf0be47498bb61dd6c4b 363 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 2 363 38.589 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 HCD_03075 8667ccd2952bbf0be47498bb61dd6c4b 363 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 244 260 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 HCD_03075 8667ccd2952bbf0be47498bb61dd6c4b 363 SMART SM00937 84 194 4.2E-52 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 HCD_03075 8667ccd2952bbf0be47498bb61dd6c4b 363 Gene3D G3DSA:3.30.160.20 225 318 4.2E-95 T 13-10-2018 HCD_03075 8667ccd2952bbf0be47498bb61dd6c4b 363 SUPERFAMILY SSF75620 29 360 8.11E-126 T 13-10-2018 HCD_03075 8667ccd2952bbf0be47498bb61dd6c4b 363 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 362 1.2E-176 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 38 564 3.7E-230 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 Gene3D G3DSA:1.10.246.130 266 379 9.4E-44 T 13-10-2018 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 Gene3D G3DSA:3.60.20.40 380 567 4.2E-81 T 13-10-2018 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 151 170 7.7E-77 T 13-10-2018 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 280 299 7.7E-77 T 13-10-2018 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 469 486 7.7E-77 T 13-10-2018 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 60 85 7.7E-77 T 13-10-2018 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 404 422 7.7E-77 T 13-10-2018 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 445 460 7.7E-77 T 13-10-2018 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 380 398 7.7E-77 T 13-10-2018 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 133 151 7.7E-77 T 13-10-2018 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 250 266 7.7E-77 T 13-10-2018 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 Pfam PF01019 Gamma-glutamyltranspeptidase 53 566 1.4E-188 T 13-10-2018 HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 SUPERFAMILY SSF56235 34 566 3.67E-185 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal HCD_07270 f5961840e78665cd6a5d2e2e0f20b4ed 567 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 380 404 - T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 HCD_05980 46447a9dfe8cab6862a827f5e3956675 578 Pfam PF08439 Oligopeptidase F 103 168 3.4E-11 T 13-10-2018 IPR013647 Oligopeptidase F, N-terminal domain HCD_05980 46447a9dfe8cab6862a827f5e3956675 578 TIGRFAM TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family 5 572 5.9E-190 T 13-10-2018 IPR011977 Peptidase M3B, oligoendopeptidase-related clade 3 HCD_05980 46447a9dfe8cab6862a827f5e3956675 578 Pfam PF01432 Peptidase family M3 184 560 2.2E-61 T 13-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 HCD_05980 46447a9dfe8cab6862a827f5e3956675 578 Gene3D G3DSA:1.20.140.70 14 161 4.6E-15 T 13-10-2018 HCD_05980 46447a9dfe8cab6862a827f5e3956675 578 SUPERFAMILY SSF55486 2 557 1.51E-94 T 13-10-2018 HCD_05980 46447a9dfe8cab6862a827f5e3956675 578 Gene3D G3DSA:1.10.1370.20 210 577 2.8E-105 T 13-10-2018 HCD_03935 5eb448b969cccee2da28eeba1c7de3af 329 Gene3D G3DSA:3.40.50.150 2 219 8.1E-7 T 13-10-2018 HCD_03935 5eb448b969cccee2da28eeba1c7de3af 329 Gene3D G3DSA:1.10.1020.10 59 184 8.1E-7 T 13-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 HCD_03935 5eb448b969cccee2da28eeba1c7de3af 329 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 3 290 1.8E-62 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_03935 5eb448b969cccee2da28eeba1c7de3af 329 SUPERFAMILY SSF53335 1 290 1.22E-44 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_03935 5eb448b969cccee2da28eeba1c7de3af 329 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 207 213 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_03935 5eb448b969cccee2da28eeba1c7de3af 329 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 52 65 5.9E-16 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_03935 5eb448b969cccee2da28eeba1c7de3af 329 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 3 19 5.9E-16 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_03935 5eb448b969cccee2da28eeba1c7de3af 329 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 204 216 5.9E-16 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_03935 5eb448b969cccee2da28eeba1c7de3af 329 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 5.9E-16 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_02430 f66b981f92ff58d0580df91da8240e40 326 Gene3D G3DSA:3.30.200.120 1 94 1.7E-38 T 13-10-2018 HCD_02430 f66b981f92ff58d0580df91da8240e40 326 Pfam PF07804 HipA-like C-terminal domain 23 186 3.8E-9 T 13-10-2018 IPR012893 HipA-like, C-terminal HCD_02430 f66b981f92ff58d0580df91da8240e40 326 Gene3D G3DSA:1.10.1070.20 95 295 1.4E-84 T 13-10-2018 HCD_00415 a49ff2ddfd32949a3ee41aecc05b65a2 265 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 62 184 5.9E-34 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00415 a49ff2ddfd32949a3ee41aecc05b65a2 265 Gene3D G3DSA:3.30.460.80 10 163 9.5E-27 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00415 a49ff2ddfd32949a3ee41aecc05b65a2 265 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 61 183 1.3E-41 T 13-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00415 a49ff2ddfd32949a3ee41aecc05b65a2 265 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 144 165 - T 13-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00415 a49ff2ddfd32949a3ee41aecc05b65a2 265 SUPERFAMILY SSF143243 48 211 2.48E-43 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00415 a49ff2ddfd32949a3ee41aecc05b65a2 265 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 113 179 2.0E-28 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_02295 a975c2e4015a2650d39f078a4be800fa 519 SUPERFAMILY SSF50182 307 387 1.77E-6 T 13-10-2018 IPR010920 LSM domain superfamily HCD_02295 a975c2e4015a2650d39f078a4be800fa 519 Pfam PF00924 Mechanosensitive ion channel 263 497 1.1E-50 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 HCD_00390 9a2bde11a0d3f31cc798304b18d1f9f3 185 Gene3D G3DSA:3.30.1360.40 31 105 4.8E-62 T 13-10-2018 HCD_00390 9a2bde11a0d3f31cc798304b18d1f9f3 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 6.8E-77 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 HCD_00390 9a2bde11a0d3f31cc798304b18d1f9f3 185 Pfam PF01765 Ribosome recycling factor 20 183 2.1E-58 T 13-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 HCD_00390 9a2bde11a0d3f31cc798304b18d1f9f3 185 Gene3D G3DSA:1.10.132.20 13 182 4.8E-62 T 13-10-2018 HCD_00390 9a2bde11a0d3f31cc798304b18d1f9f3 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 24.593 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 HCD_00390 9a2bde11a0d3f31cc798304b18d1f9f3 185 SUPERFAMILY SSF55194 3 184 1.24E-63 T 13-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 HCD_02510 4ad3c8c995da3b1479400c6734962438 213 SUPERFAMILY SSF54719 81 194 5.89E-41 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 HCD_02510 4ad3c8c995da3b1479400c6734962438 213 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 188 6.8E-35 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 HCD_02510 4ad3c8c995da3b1479400c6734962438 213 PRINTS PR01703 Manganese superoxide dismutase signature 64 77 2.4E-15 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 HCD_02510 4ad3c8c995da3b1479400c6734962438 213 PRINTS PR01703 Manganese superoxide dismutase signature 26 39 2.4E-15 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 HCD_02510 4ad3c8c995da3b1479400c6734962438 213 PRINTS PR01703 Manganese superoxide dismutase signature 116 124 2.4E-15 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 HCD_02510 4ad3c8c995da3b1479400c6734962438 213 PRINTS PR01703 Manganese superoxide dismutase signature 154 166 2.4E-15 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 HCD_02510 4ad3c8c995da3b1479400c6734962438 213 Gene3D G3DSA:1.10.287.990 21 81 3.0E-24 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 HCD_02510 4ad3c8c995da3b1479400c6734962438 213 PIRSF PIRSF000349 1 197 3.8E-69 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 HCD_02510 4ad3c8c995da3b1479400c6734962438 213 SUPERFAMILY SSF46609 1 82 1.19E-28 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 HCD_02510 4ad3c8c995da3b1479400c6734962438 213 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 81 1.3E-22 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 HCD_02510 4ad3c8c995da3b1479400c6734962438 213 Gene3D G3DSA:2.40.500.20 82 213 5.2E-51 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 HCD_02510 4ad3c8c995da3b1479400c6734962438 213 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 156 163 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 HCD_02805 7291c193072fedef20f194cc41930efc 349 SUPERFAMILY SSF53756 9 347 3.77E-76 T 13-10-2018 HCD_02805 7291c193072fedef20f194cc41930efc 349 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 10 346 8.9E-59 T 13-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 HCD_02805 7291c193072fedef20f194cc41930efc 349 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 78 321 3.5E-64 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 HCD_02805 7291c193072fedef20f194cc41930efc 349 Gene3D G3DSA:3.40.50.2000 163 349 1.5E-49 T 13-10-2018 HCD_02805 7291c193072fedef20f194cc41930efc 349 Gene3D G3DSA:3.40.50.2000 4 153 9.0E-23 T 13-10-2018 HCD_08355 10d199cb1a0c4a842795184cb334f450 3503 SMART SM00487 2423 2697 6.2E-22 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain HCD_08355 10d199cb1a0c4a842795184cb334f450 3503 SMART SM00490 2951 3040 6.6E-5 T 13-10-2018 IPR001650 Helicase, C-terminal HCD_08355 10d199cb1a0c4a842795184cb334f450 3503 SUPERFAMILY SSF52540 2374 2702 1.46E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_08355 10d199cb1a0c4a842795184cb334f450 3503 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 1717 1741 2.0E-9 T 13-10-2018 HCD_08355 10d199cb1a0c4a842795184cb334f450 3503 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 1633 1647 2.0E-9 T 13-10-2018 HCD_08355 10d199cb1a0c4a842795184cb334f450 3503 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 1603 1619 2.0E-9 T 13-10-2018 HCD_08355 10d199cb1a0c4a842795184cb334f450 3503 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 1691 1703 2.0E-9 T 13-10-2018 HCD_08355 10d199cb1a0c4a842795184cb334f450 3503 SUPERFAMILY SSF52540 2609 3093 1.23E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_08355 10d199cb1a0c4a842795184cb334f450 3503 SUPERFAMILY SSF53335 1577 1844 8.86E-34 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_08355 10d199cb1a0c4a842795184cb334f450 3503 Gene3D G3DSA:3.40.50.150 1600 1819 4.4E-28 T 13-10-2018 HCD_08355 10d199cb1a0c4a842795184cb334f450 3503 Pfam PF00176 SNF2 family N-terminal domain 2446 2703 1.6E-14 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 HCD_08355 10d199cb1a0c4a842795184cb334f450 3503 Pfam PF07669 Eco57I restriction-modification methylase 1691 1789 3.4E-6 T 13-10-2018 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 HCD_08355 10d199cb1a0c4a842795184cb334f450 3503 Gene3D G3DSA:3.40.50.300 2926 3082 1.8E-15 T 13-10-2018 HCD_01650 ab9d384fd2504a4d13f992e73cd06f08 327 SUPERFAMILY SSF51735 1 262 2.53E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_01650 ab9d384fd2504a4d13f992e73cd06f08 327 Gene3D G3DSA:3.40.50.720 4 310 8.1E-143 T 13-10-2018 HCD_01650 ab9d384fd2504a4d13f992e73cd06f08 327 Pfam PF02719 Polysaccharide biosynthesis protein 7 280 1.1E-103 T 13-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain HCD_01650 ab9d384fd2504a4d13f992e73cd06f08 327 TIGRFAM TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 1 325 6.7E-161 T 13-10-2018 IPR020025 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) KEGG: 00520+4.2.1.115|MetaCyc: PWY-6143|MetaCyc: PWY-7330|MetaCyc: PWY-7331|MetaCyc: PWY-7332|MetaCyc: PWY-7719 HCD_01650 ab9d384fd2504a4d13f992e73cd06f08 327 Gene3D G3DSA:3.90.25.30 167 314 8.1E-143 T 13-10-2018 HCD_01915 15910feec88c60c4e6a6f7cf49b80c24 303 SUPERFAMILY SSF53335 7 302 1.64E-52 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_01915 15910feec88c60c4e6a6f7cf49b80c24 303 TIGRFAM TIGR00571 dam: DNA adenine methylase 11 300 7.3E-45 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_01915 15910feec88c60c4e6a6f7cf49b80c24 303 PIRSF PIRSF000398 4 303 4.5E-56 T 13-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 HCD_01915 15910feec88c60c4e6a6f7cf49b80c24 303 Gene3D G3DSA:3.40.50.150 12 281 1.5E-70 T 13-10-2018 HCD_01915 15910feec88c60c4e6a6f7cf49b80c24 303 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 34 48 7.4E-16 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_01915 15910feec88c60c4e6a6f7cf49b80c24 303 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 53 66 7.4E-16 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_01915 15910feec88c60c4e6a6f7cf49b80c24 303 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 12 28 7.4E-16 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_01915 15910feec88c60c4e6a6f7cf49b80c24 303 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 205 217 7.4E-16 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_01915 15910feec88c60c4e6a6f7cf49b80c24 303 Gene3D G3DSA:1.10.1020.10 59 181 1.5E-70 T 13-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 HCD_01915 15910feec88c60c4e6a6f7cf49b80c24 303 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 208 214 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_01915 15910feec88c60c4e6a6f7cf49b80c24 303 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 12 278 1.4E-35 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_01590 3b258c02f0320f875f6d4e2c15a39f16 82 SUPERFAMILY SSF54928 2 81 8.06E-28 T 13-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 HCD_01590 3b258c02f0320f875f6d4e2c15a39f16 82 Gene3D G3DSA:3.30.70.330 1 82 3.3E-28 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily HCD_01590 3b258c02f0320f875f6d4e2c15a39f16 82 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 73 1.7E-21 T 13-10-2018 IPR000504 RNA recognition motif domain GO:0003676 HCD_01590 3b258c02f0320f875f6d4e2c15a39f16 82 SMART SM00360 3 75 2.8E-23 T 13-10-2018 IPR000504 RNA recognition motif domain GO:0003676 HCD_07125 47b4be75469bd898f6101b926efcffb5 707 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 519 540 1.0E-42 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07125 47b4be75469bd898f6101b926efcffb5 707 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 545 565 1.0E-42 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07125 47b4be75469bd898f6101b926efcffb5 707 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 566 587 1.0E-42 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07125 47b4be75469bd898f6101b926efcffb5 707 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 667 688 1.0E-42 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07125 47b4be75469bd898f6101b926efcffb5 707 Pfam PF01856 Helicobacter outer membrane protein 530 707 4.9E-46 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02110 689b146d249b5dcc5ca661686805a168 385 Pfam PF02384 N-6 DNA Methylase 66 350 1.6E-76 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 HCD_02110 689b146d249b5dcc5ca661686805a168 385 SUPERFAMILY SSF53335 64 381 1.02E-81 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_02110 689b146d249b5dcc5ca661686805a168 385 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 97 111 3.4E-15 T 13-10-2018 HCD_02110 689b146d249b5dcc5ca661686805a168 385 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 168 180 3.4E-15 T 13-10-2018 HCD_02110 689b146d249b5dcc5ca661686805a168 385 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 203 227 3.4E-15 T 13-10-2018 HCD_02110 689b146d249b5dcc5ca661686805a168 385 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 73 89 3.4E-15 T 13-10-2018 HCD_02110 689b146d249b5dcc5ca661686805a168 385 Gene3D G3DSA:3.40.50.150 74 344 4.9E-70 T 13-10-2018 HCD_03755 c49c18e2ed172613c9f6e423972f9d4d 268 Pfam PF03180 NLPA lipoprotein 36 268 1.4E-87 T 13-10-2018 IPR004872 Lipoprotein NlpA family HCD_03755 c49c18e2ed172613c9f6e423972f9d4d 268 Gene3D G3DSA:3.40.190.10 117 218 2.7E-89 T 13-10-2018 HCD_03755 c49c18e2ed172613c9f6e423972f9d4d 268 SUPERFAMILY SSF53850 35 268 5.28E-76 T 13-10-2018 HCD_03755 c49c18e2ed172613c9f6e423972f9d4d 268 PIRSF PIRSF002854 1 268 3.7E-95 T 13-10-2018 IPR004872 Lipoprotein NlpA family HCD_03755 c49c18e2ed172613c9f6e423972f9d4d 268 Gene3D G3DSA:3.40.190.10 36 265 2.7E-89 T 13-10-2018 HCD_00710 6dba59933087768f7a47002a2a7caeed 86 PIRSF PIRSF038881 1 85 1.3E-25 T 13-10-2018 IPR025490 RNA-binding protein, HP1423 type HCD_00710 6dba59933087768f7a47002a2a7caeed 86 SUPERFAMILY SSF55174 1 79 6.28E-17 T 13-10-2018 HCD_00710 6dba59933087768f7a47002a2a7caeed 86 Pfam PF01479 S4 domain 1 47 3.4E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_00710 6dba59933087768f7a47002a2a7caeed 86 SMART SM00363 1 60 8.7E-12 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_00710 6dba59933087768f7a47002a2a7caeed 86 Gene3D G3DSA:3.10.290.10 1 86 9.8E-25 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 HCD_06360 e36677008abf6736296ea81262d0553f 68 SUPERFAMILY SSF55008 3 67 2.09E-15 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 HCD_06360 e36677008abf6736296ea81262d0553f 68 Pfam PF00403 Heavy-metal-associated domain 6 64 1.5E-12 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 HCD_06360 e36677008abf6736296ea81262d0553f 68 Gene3D G3DSA:3.30.70.100 3 67 1.1E-16 T 13-10-2018 HCD_06360 e36677008abf6736296ea81262d0553f 68 PRINTS PR00944 Copper ion binding protein signature 16 29 2.3E-31 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 HCD_06360 e36677008abf6736296ea81262d0553f 68 PRINTS PR00944 Copper ion binding protein signature 54 67 2.3E-31 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 HCD_06360 e36677008abf6736296ea81262d0553f 68 PRINTS PR00944 Copper ion binding protein signature 4 16 2.3E-31 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 HCD_06360 e36677008abf6736296ea81262d0553f 68 PRINTS PR00944 Copper ion binding protein signature 42 54 2.3E-31 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 HCD_06360 e36677008abf6736296ea81262d0553f 68 PRINTS PR00944 Copper ion binding protein signature 29 42 2.3E-31 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 HCD_06360 e36677008abf6736296ea81262d0553f 68 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 4 67 1.5E-32 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 HCD_04625 c5a7e2d420ca1e3ea2c42273cca67971 597 Gene3D G3DSA:3.40.50.10490 242 596 1.6E-110 T 13-10-2018 HCD_04625 c5a7e2d420ca1e3ea2c42273cca67971 597 Gene3D G3DSA:3.60.20.10 2 234 9.0E-71 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal HCD_04625 c5a7e2d420ca1e3ea2c42273cca67971 597 Pfam PF13522 Glutamine amidotransferase domain 67 192 6.6E-21 T 13-10-2018 HCD_04625 c5a7e2d420ca1e3ea2c42273cca67971 597 Gene3D G3DSA:3.40.50.10490 435 582 1.6E-110 T 13-10-2018 HCD_04625 c5a7e2d420ca1e3ea2c42273cca67971 597 SUPERFAMILY SSF56235 2 225 3.95E-64 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal HCD_04625 c5a7e2d420ca1e3ea2c42273cca67971 597 Pfam PF01380 SIS domain 460 547 1.4E-10 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 HCD_04625 c5a7e2d420ca1e3ea2c42273cca67971 597 Pfam PF01380 SIS domain 283 406 1.9E-22 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 HCD_04625 c5a7e2d420ca1e3ea2c42273cca67971 597 SUPERFAMILY SSF53697 240 597 2.04E-81 T 13-10-2018 HCD_04625 c5a7e2d420ca1e3ea2c42273cca67971 597 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 597 1.3E-228 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 HCD_02470 3c92c92d5202adb201956f0f368846c6 368 Pfam PF01883 Iron-sulfur cluster assembly protein 5 67 1.1E-7 T 13-10-2018 IPR002744 MIP18 family-like HCD_02470 3c92c92d5202adb201956f0f368846c6 368 Gene3D G3DSA:3.40.50.300 84 340 2.9E-80 T 13-10-2018 HCD_02470 3c92c92d5202adb201956f0f368846c6 368 SUPERFAMILY SSF52540 97 353 1.73E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02470 3c92c92d5202adb201956f0f368846c6 368 ProSitePatterns PS01215 Mrp family signature. 204 220 - T 13-10-2018 IPR000808 Mrp, conserved site GO:0005524 HCD_02470 3c92c92d5202adb201956f0f368846c6 368 Hamap MF_02040 Iron-sulfur cluster carrier protein. 90 341 37.516 T 13-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein HCD_02470 3c92c92d5202adb201956f0f368846c6 368 SUPERFAMILY SSF117916 1 86 1.31E-12 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily HCD_02470 3c92c92d5202adb201956f0f368846c6 368 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 95 340 1.5E-95 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 HCD_04475 1940c47dc82cb27101819de167459551 782 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 236 779 2.9E-109 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 HCD_04475 1940c47dc82cb27101819de167459551 782 Pfam PF00702 haloacid dehalogenase-like hydrolase 491 692 7.8E-24 T 13-10-2018 HCD_04475 1940c47dc82cb27101819de167459551 782 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 494 508 8.9E-11 T 13-10-2018 HCD_04475 1940c47dc82cb27101819de167459551 782 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 678 697 8.9E-11 T 13-10-2018 HCD_04475 1940c47dc82cb27101819de167459551 782 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 628 638 8.9E-11 T 13-10-2018 HCD_04475 1940c47dc82cb27101819de167459551 782 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 345 359 8.9E-11 T 13-10-2018 HCD_04475 1940c47dc82cb27101819de167459551 782 SUPERFAMILY SSF56784 493 777 1.41E-34 T 13-10-2018 IPR036412 HAD-like superfamily HCD_04475 1940c47dc82cb27101819de167459551 782 SUPERFAMILY SSF55008 84 153 3.4E-14 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 HCD_04475 1940c47dc82cb27101819de167459551 782 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 496 502 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 HCD_04475 1940c47dc82cb27101819de167459551 782 SUPERFAMILY SSF81653 302 393 7.06E-10 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 HCD_04475 1940c47dc82cb27101819de167459551 782 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 269 761 3.4E-84 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 HCD_04475 1940c47dc82cb27101819de167459551 782 Pfam PF00403 Heavy-metal-associated domain 90 144 3.3E-8 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 HCD_04475 1940c47dc82cb27101819de167459551 782 SUPERFAMILY SSF81665 163 488 1.19E-7 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 HCD_04475 1940c47dc82cb27101819de167459551 782 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 2 51 1.7E-13 T 13-10-2018 IPR021993 Putative metal-binding domain of cation transport ATPase HCD_04475 1940c47dc82cb27101819de167459551 782 Gene3D G3DSA:2.70.150.20 291 398 3.1E-11 T 13-10-2018 HCD_04475 1940c47dc82cb27101819de167459551 782 Gene3D G3DSA:3.40.1110.10 505 613 8.5E-50 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 HCD_04475 1940c47dc82cb27101819de167459551 782 Pfam PF00122 E1-E2 ATPase 300 470 1.3E-29 T 13-10-2018 HCD_04475 1940c47dc82cb27101819de167459551 782 Gene3D G3DSA:3.40.50.1000 476 728 8.5E-50 T 13-10-2018 IPR023214 HAD superfamily HCD_04475 1940c47dc82cb27101819de167459551 782 Gene3D G3DSA:3.30.70.100 85 149 1.6E-12 T 13-10-2018 HCD_04245 efcefc5f3085d71014586b91a31cfc3c 451 SMART SM00228 107 178 6.2E-12 T 13-10-2018 IPR001478 PDZ domain GO:0005515 HCD_04245 efcefc5f3085d71014586b91a31cfc3c 451 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 57 385 3.7E-117 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 HCD_04245 efcefc5f3085d71014586b91a31cfc3c 451 Gene3D G3DSA:2.30.42.10 107 194 4.6E-84 T 13-10-2018 HCD_04245 efcefc5f3085d71014586b91a31cfc3c 451 SUPERFAMILY SSF50156 79 199 6.79E-22 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 HCD_04245 efcefc5f3085d71014586b91a31cfc3c 451 Gene3D G3DSA:3.30.750.44 54 343 4.6E-84 T 13-10-2018 HCD_04245 efcefc5f3085d71014586b91a31cfc3c 451 SUPERFAMILY SSF52096 47 371 8.45E-71 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily HCD_04245 efcefc5f3085d71014586b91a31cfc3c 451 Pfam PF03572 Peptidase family S41 208 366 6.2E-51 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 HCD_04245 efcefc5f3085d71014586b91a31cfc3c 451 Pfam PF13180 PDZ domain 107 182 1.8E-9 T 13-10-2018 IPR001478 PDZ domain GO:0005515 HCD_04245 efcefc5f3085d71014586b91a31cfc3c 451 SMART SM00245 180 368 4.0E-78 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 HCD_04245 efcefc5f3085d71014586b91a31cfc3c 451 Gene3D G3DSA:3.90.226.10 195 365 4.6E-84 T 13-10-2018 HCD_02675 41ac453728e819b08c0add46629a2469 617 TIGRFAM TIGR03701 mena_SCO4490: menaquinone biosynthesis decarboxylase, SCO4490 family 3 443 3.6E-195 T 13-10-2018 IPR022390 4-hydroxybenzoate decarboxylase subunit C GO:0016831 HCD_02675 41ac453728e819b08c0add46629a2469 617 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 2 451 3.0E-165 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 HCD_02675 41ac453728e819b08c0add46629a2469 617 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 5 420 4.3E-119 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 HCD_02675 41ac453728e819b08c0add46629a2469 617 SUPERFAMILY SSF50475 2 320 3.02E-94 T 13-10-2018 HCD_02675 41ac453728e819b08c0add46629a2469 617 SUPERFAMILY SSF143968 321 454 1.12E-36 T 13-10-2018 HCD_02675 41ac453728e819b08c0add46629a2469 617 SUPERFAMILY SSF143968 464 588 4.71E-8 T 13-10-2018 HCD_02675 41ac453728e819b08c0add46629a2469 617 Gene3D G3DSA:3.40.1670.10 335 450 2.2E-26 T 13-10-2018 HCD_02570 8420bb3e2c013685580e8b92e4838ab0 142 Pfam PF02050 Flagellar FliJ protein 17 132 6.6E-12 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 HCD_05170 e1a63b02395406392ae543cad1c912e9 437 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 31 419 1.4E-94 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_05170 e1a63b02395406392ae543cad1c912e9 437 Gene3D G3DSA:3.90.120.10 319 396 3.0E-7 T 13-10-2018 HCD_05170 e1a63b02395406392ae543cad1c912e9 437 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 30 46 1.5E-18 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_05170 e1a63b02395406392ae543cad1c912e9 437 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 181 194 1.5E-18 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_05170 e1a63b02395406392ae543cad1c912e9 437 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 135 149 1.5E-18 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_05170 e1a63b02395406392ae543cad1c912e9 437 Gene3D G3DSA:3.40.50.150 30 210 1.3E-70 T 13-10-2018 HCD_05170 e1a63b02395406392ae543cad1c912e9 437 Gene3D G3DSA:3.40.50.150 397 419 3.0E-7 T 13-10-2018 HCD_05170 e1a63b02395406392ae543cad1c912e9 437 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 96 108 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 HCD_05170 e1a63b02395406392ae543cad1c912e9 437 Pfam PF00145 C-5 cytosine-specific DNA methylase 30 419 6.9E-77 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_05170 e1a63b02395406392ae543cad1c912e9 437 SUPERFAMILY SSF53335 30 420 8.31E-73 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 Gene3D G3DSA:3.30.70.890 155 260 6.9E-73 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 Gene3D G3DSA:3.30.230.10 3 154 6.9E-73 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 Pfam PF00288 GHMP kinases N terminal domain 76 136 1.4E-8 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 Hamap MF_00384 Homoserine kinase [thrB]. 3 291 26.668 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 SUPERFAMILY SSF54211 2 148 4.55E-25 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 SUPERFAMILY SSF55060 158 276 4.56E-30 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 PRINTS PR00958 Homoserine kinase signature 123 136 8.3E-30 T 13-10-2018 HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 PRINTS PR00958 Homoserine kinase signature 89 104 8.3E-30 T 13-10-2018 HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 PRINTS PR00958 Homoserine kinase signature 241 256 8.3E-30 T 13-10-2018 HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 PRINTS PR00958 Homoserine kinase signature 162 179 8.3E-30 T 13-10-2018 HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 PRINTS PR00958 Homoserine kinase signature 8 23 8.3E-30 T 13-10-2018 HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 82 93 - T 13-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 PIRSF PIRSF000676 1 293 1.7E-80 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 HCD_08160 ca79d003906f2517925bf47d43e02ef2 293 TIGRFAM TIGR00191 thrB: homoserine kinase 2 292 2.3E-103 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 HCD_03955 f914de1ecbd25850d829d14a5e558360 131 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 13 128 1.1E-52 T 13-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03955 f914de1ecbd25850d829d14a5e558360 131 Pfam PF00411 Ribosomal protein S11 20 130 5.6E-42 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 HCD_03955 f914de1ecbd25850d829d14a5e558360 131 SUPERFAMILY SSF53137 14 131 2.31E-43 T 13-10-2018 HCD_03955 f914de1ecbd25850d829d14a5e558360 131 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 131 32.125 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 HCD_03955 f914de1ecbd25850d829d14a5e558360 131 PIRSF PIRSF002131 1 131 8.1E-48 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 HCD_03955 f914de1ecbd25850d829d14a5e558360 131 Gene3D G3DSA:3.30.420.80 1 131 3.3E-49 T 13-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 HCD_03955 f914de1ecbd25850d829d14a5e558360 131 ProSitePatterns PS00054 Ribosomal protein S11 signature. 98 121 - T 13-10-2018 IPR018102 Ribosomal S11, conserved site HCD_00820 cf707a1cb0fecb1a223b91b972dce507 262 Gene3D G3DSA:3.30.30.80 1 57 1.0E-17 T 13-10-2018 IPR038247 Jag, N-terminal domain superfamily HCD_00820 cf707a1cb0fecb1a223b91b972dce507 262 Pfam PF14804 Jag N-terminus 8 56 9.4E-16 T 13-10-2018 IPR032782 Jag, N-terminal HCD_00820 cf707a1cb0fecb1a223b91b972dce507 262 Gene3D G3DSA:3.30.1370.180 191 262 1.0E-33 T 13-10-2018 HCD_00820 cf707a1cb0fecb1a223b91b972dce507 262 SMART SM01245 6 57 4.7E-18 T 13-10-2018 IPR032782 Jag, N-terminal HCD_00820 cf707a1cb0fecb1a223b91b972dce507 262 Gene3D G3DSA:3.30.300.20 111 190 2.5E-34 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta HCD_05605 e0ad2eff1611d6e11415ada96b61d09f 195 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 1 192 5.3E-109 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 HCD_05605 e0ad2eff1611d6e11415ada96b61d09f 195 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 1.0E-52 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 HCD_05605 e0ad2eff1611d6e11415ada96b61d09f 195 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 1.0E-52 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 HCD_05605 e0ad2eff1611d6e11415ada96b61d09f 195 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 1.0E-52 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 HCD_05605 e0ad2eff1611d6e11415ada96b61d09f 195 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 1.0E-52 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 HCD_05605 e0ad2eff1611d6e11415ada96b61d09f 195 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 1.0E-52 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 HCD_05605 e0ad2eff1611d6e11415ada96b61d09f 195 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 90 101 - T 13-10-2018 IPR018215 ClpP, Ser active site HCD_05605 e0ad2eff1611d6e11415ada96b61d09f 195 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 193 43.839 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 HCD_05605 e0ad2eff1611d6e11415ada96b61d09f 195 Pfam PF00574 Clp protease 13 192 1.4E-85 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA HCD_05605 e0ad2eff1611d6e11415ada96b61d09f 195 Gene3D G3DSA:3.90.226.10 1 194 3.6E-81 T 13-10-2018 HCD_05605 e0ad2eff1611d6e11415ada96b61d09f 195 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 13-10-2018 IPR033135 ClpP, histidine active site HCD_05605 e0ad2eff1611d6e11415ada96b61d09f 195 SUPERFAMILY SSF52096 11 192 9.94E-72 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily HCD_06540 3ed5bf694984f1d085033942fb6e4518 267 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 49 175 5.0E-8 T 13-10-2018 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system HCD_01450 5426e6663ff48bd73f377dd3d93cd4a3 70 Gene3D G3DSA:1.20.5.1150 16 54 3.1E-5 T 13-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01450 5426e6663ff48bd73f377dd3d93cd4a3 70 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.2E-8 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01450 5426e6663ff48bd73f377dd3d93cd4a3 70 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.2E-8 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01450 5426e6663ff48bd73f377dd3d93cd4a3 70 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.2E-8 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01450 5426e6663ff48bd73f377dd3d93cd4a3 70 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.2E-8 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01450 5426e6663ff48bd73f377dd3d93cd4a3 70 Pfam PF01165 Ribosomal protein S21 4 56 1.7E-13 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01450 5426e6663ff48bd73f377dd3d93cd4a3 70 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 20.032 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01450 5426e6663ff48bd73f377dd3d93cd4a3 70 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 43 9.0E-10 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01450 5426e6663ff48bd73f377dd3d93cd4a3 70 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 1.1E-19 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01450 5426e6663ff48bd73f377dd3d93cd4a3 70 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 13-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_00565 7c5478c150be881dab0b3ef9f6dbc073 262 Gene3D G3DSA:3.20.20.70 1 262 8.0E-87 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_00565 7c5478c150be881dab0b3ef9f6dbc073 262 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 7 260 5.8E-105 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 HCD_00565 7c5478c150be881dab0b3ef9f6dbc073 262 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 13 259 34.364 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 HCD_00565 7c5478c150be881dab0b3ef9f6dbc073 262 SUPERFAMILY SSF51366 2 259 1.41E-80 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 HCD_00565 7c5478c150be881dab0b3ef9f6dbc073 262 Pfam PF00290 Tryptophan synthase alpha chain 7 260 3.3E-83 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 59 83 4.5E-12 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 414 436 4.5E-12 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 486 507 4.5E-12 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 85 105 4.5E-12 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 263 285 4.5E-12 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 Pfam PF00361 Proton-conducting membrane transporter 134 422 2.5E-82 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 415 434 1.4E-61 T 13-10-2018 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 83 108 1.4E-61 T 13-10-2018 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 313 325 1.4E-61 T 13-10-2018 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 223 244 1.4E-61 T 13-10-2018 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 158 179 1.4E-61 T 13-10-2018 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 111 131 1.4E-61 T 13-10-2018 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 245 271 1.4E-61 T 13-10-2018 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 65 122 5.6E-23 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00460 5aba35a0d0bdecd57c002d687b693054 613 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 6 608 1.1E-232 T 13-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_02635 afe3454c53ed6e48a6d3d1f99045b86a 104 ProSitePatterns PS00892 HIT domain signature. 82 100 - T 13-10-2018 IPR019808 Histidine triad, conserved site HCD_02635 afe3454c53ed6e48a6d3d1f99045b86a 104 Pfam PF01230 HIT domain 9 103 4.8E-29 T 13-10-2018 IPR001310 Histidine triad (HIT) protein HCD_02635 afe3454c53ed6e48a6d3d1f99045b86a 104 SUPERFAMILY SSF54197 2 102 1.18E-28 T 13-10-2018 IPR036265 HIT-like superfamily HCD_02635 afe3454c53ed6e48a6d3d1f99045b86a 104 PRINTS PR00332 Histidine triad family signature 24 42 2.8E-18 T 13-10-2018 IPR001310 Histidine triad (HIT) protein HCD_02635 afe3454c53ed6e48a6d3d1f99045b86a 104 PRINTS PR00332 Histidine triad family signature 3 19 2.8E-18 T 13-10-2018 IPR001310 Histidine triad (HIT) protein HCD_02635 afe3454c53ed6e48a6d3d1f99045b86a 104 PRINTS PR00332 Histidine triad family signature 89 99 2.8E-18 T 13-10-2018 IPR001310 Histidine triad (HIT) protein HCD_02635 afe3454c53ed6e48a6d3d1f99045b86a 104 Gene3D G3DSA:3.30.428.10 1 104 4.5E-36 T 13-10-2018 IPR036265 HIT-like superfamily HCD_05780 dbd7835b13f82968184b532999bcfb4f 519 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 198 3.5E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 HCD_05780 dbd7835b13f82968184b532999bcfb4f 519 SUPERFAMILY SSF53850 253 516 5.1E-59 T 13-10-2018 HCD_05780 dbd7835b13f82968184b532999bcfb4f 519 Gene3D G3DSA:1.10.3720.10 13 206 1.9E-23 T 13-10-2018 IPR035906 MetI-like superfamily HCD_05780 dbd7835b13f82968184b532999bcfb4f 519 Gene3D G3DSA:3.40.190.10 257 515 2.8E-84 T 13-10-2018 HCD_05780 dbd7835b13f82968184b532999bcfb4f 519 SUPERFAMILY SSF161098 18 200 1.96E-28 T 13-10-2018 IPR035906 MetI-like superfamily HCD_05780 dbd7835b13f82968184b532999bcfb4f 519 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 253 515 2.2E-59 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 HCD_05780 dbd7835b13f82968184b532999bcfb4f 519 Gene3D G3DSA:3.40.190.120 356 459 2.8E-84 T 13-10-2018 HCD_02960 63fe395f49a74f5ad88b1f3698e8b60f 159 Pfam PF06271 RDD family 29 136 8.2E-9 T 13-10-2018 IPR010432 RDD HCD_04450 c4ec3f5ce3431456b943e48ef7588e7f 702 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 63 75 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 HCD_04450 c4ec3f5ce3431456b943e48ef7588e7f 702 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 5 319 3.3E-90 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_04450 c4ec3f5ce3431456b943e48ef7588e7f 702 Gene3D G3DSA:3.40.50.150 4 314 5.6E-95 T 13-10-2018 HCD_04450 c4ec3f5ce3431456b943e48ef7588e7f 702 Pfam PF00145 C-5 cytosine-specific DNA methylase 4 320 1.9E-88 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_04450 c4ec3f5ce3431456b943e48ef7588e7f 702 Gene3D G3DSA:3.90.120.10 180 286 5.6E-95 T 13-10-2018 HCD_04450 c4ec3f5ce3431456b943e48ef7588e7f 702 SUPERFAMILY SSF53335 3 324 6.65E-82 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_04450 c4ec3f5ce3431456b943e48ef7588e7f 702 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 3 19 1.3E-15 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_04450 c4ec3f5ce3431456b943e48ef7588e7f 702 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 103 117 1.3E-15 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_04450 c4ec3f5ce3431456b943e48ef7588e7f 702 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 149 162 1.3E-15 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_07345 ec730844bf8c709f599d4878084631f6 466 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 336 345 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_07345 ec730844bf8c709f599d4878084631f6 466 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 132 345 2.1E-66 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_07345 ec730844bf8c709f599d4878084631f6 466 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 2 463 5.9E-260 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 HCD_07345 ec730844bf8c709f599d4878084631f6 466 SUPERFAMILY SSF52540 79 350 1.78E-94 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_07345 ec730844bf8c709f599d4878084631f6 466 SUPERFAMILY SSF47917 348 464 4.45E-51 T 13-10-2018 HCD_07345 ec730844bf8c709f599d4878084631f6 466 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 463 54.896 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 HCD_07345 ec730844bf8c709f599d4878084631f6 466 Gene3D G3DSA:2.40.10.170 1 76 4.9E-25 T 13-10-2018 HCD_07345 ec730844bf8c709f599d4878084631f6 466 Gene3D G3DSA:1.10.1140.10 348 466 2.2E-56 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_07345 ec730844bf8c709f599d4878084631f6 466 Gene3D G3DSA:3.40.50.300 78 347 8.9E-116 T 13-10-2018 HCD_07345 ec730844bf8c709f599d4878084631f6 466 SMART SM00382 144 322 6.2E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_07345 ec730844bf8c709f599d4878084631f6 466 SUPERFAMILY SSF50615 2 75 3.14E-21 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_07345 ec730844bf8c709f599d4878084631f6 466 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 5 75 1.1E-17 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_06805 b836009edd40173e68968d0b8d89875b 158 Pfam PF04608 Phosphatidylglycerophosphatase A 9 147 4.6E-38 T 13-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 HCD_06805 b836009edd40173e68968d0b8d89875b 158 PIRSF PIRSF006162 2 155 1.9E-36 T 13-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 HCD_06805 b836009edd40173e68968d0b8d89875b 158 SUPERFAMILY SSF101307 7 147 2.62E-32 T 13-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 HCD_06925 531dc918b69c89852b282410cbaf235f 295 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 23 289 56.412 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 HCD_06925 531dc918b69c89852b282410cbaf235f 295 SMART SM00962 88 289 2.7E-98 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 HCD_06925 531dc918b69c89852b282410cbaf235f 295 Pfam PF00448 SRP54-type protein, GTPase domain 89 288 5.6E-72 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 HCD_06925 531dc918b69c89852b282410cbaf235f 295 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 262 275 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 HCD_06925 531dc918b69c89852b282410cbaf235f 295 Gene3D G3DSA:3.40.50.300 79 277 8.1E-87 T 13-10-2018 HCD_06925 531dc918b69c89852b282410cbaf235f 295 SUPERFAMILY SSF52540 85 287 6.0E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_06925 531dc918b69c89852b282410cbaf235f 295 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 28 288 5.1E-100 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 HCD_06925 531dc918b69c89852b282410cbaf235f 295 Gene3D G3DSA:1.20.120.140 7 287 8.1E-87 T 13-10-2018 HCD_01410 9b86b61a203de92fa30d6b69636cb073 496 SUPERFAMILY SSF53187 171 491 2.54E-104 T 13-10-2018 HCD_01410 9b86b61a203de92fa30d6b69636cb073 496 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 176 484 2.0E-108 T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 HCD_01410 9b86b61a203de92fa30d6b69636cb073 496 Gene3D G3DSA:3.40.220.10 1 155 1.4E-74 T 13-10-2018 HCD_01410 9b86b61a203de92fa30d6b69636cb073 496 PRINTS PR00481 Cytosol aminopeptidase signature 362 377 8.8E-47 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 HCD_01410 9b86b61a203de92fa30d6b69636cb073 496 PRINTS PR00481 Cytosol aminopeptidase signature 275 296 8.8E-47 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 HCD_01410 9b86b61a203de92fa30d6b69636cb073 496 PRINTS PR00481 Cytosol aminopeptidase signature 334 354 8.8E-47 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 HCD_01410 9b86b61a203de92fa30d6b69636cb073 496 PRINTS PR00481 Cytosol aminopeptidase signature 253 270 8.8E-47 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 HCD_01410 9b86b61a203de92fa30d6b69636cb073 496 PRINTS PR00481 Cytosol aminopeptidase signature 312 333 8.8E-47 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 HCD_01410 9b86b61a203de92fa30d6b69636cb073 496 SUPERFAMILY SSF52949 21 140 3.35E-11 T 13-10-2018 HCD_01410 9b86b61a203de92fa30d6b69636cb073 496 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 338 345 - T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 HCD_01410 9b86b61a203de92fa30d6b69636cb073 496 Gene3D G3DSA:3.40.630.10 156 496 2.3E-135 T 13-10-2018 HCD_01410 9b86b61a203de92fa30d6b69636cb073 496 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 67 130 1.0E-4 T 13-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 HCD_01410 9b86b61a203de92fa30d6b69636cb073 496 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 5 494 34.87 T 13-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 HCD_05630 7105cc9c6bbcd6f464eb7719b90a7b8b 943 SMART SM00926 51 105 1.1E-12 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_05630 7105cc9c6bbcd6f464eb7719b90a7b8b 943 Pfam PF01568 Molydopterin dinucleotide binding domain 826 934 8.5E-24 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 HCD_05630 7105cc9c6bbcd6f464eb7719b90a7b8b 943 Pfam PF00384 Molybdopterin oxidoreductase 108 628 4.3E-73 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_05630 7105cc9c6bbcd6f464eb7719b90a7b8b 943 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 52 104 2.9E-16 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_05630 7105cc9c6bbcd6f464eb7719b90a7b8b 943 SUPERFAMILY SSF53706 47 644 5.37E-169 T 13-10-2018 HCD_05630 7105cc9c6bbcd6f464eb7719b90a7b8b 943 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 12 940 31.424 T 13-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 HCD_05630 7105cc9c6bbcd6f464eb7719b90a7b8b 943 SUPERFAMILY SSF50692 803 940 1.08E-41 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily HCD_05630 7105cc9c6bbcd6f464eb7719b90a7b8b 943 Gene3D G3DSA:2.40.40.20 817 940 1.5E-45 T 13-10-2018 HCD_05630 7105cc9c6bbcd6f464eb7719b90a7b8b 943 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 56 74 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 HCD_05630 7105cc9c6bbcd6f464eb7719b90a7b8b 943 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 15 940 0.0 T 13-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 HCD_02710 e1888f5b76d0d70ff781954b0f643e49 569 Pfam PF01979 Amidohydrolase family 126 455 4.8E-72 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 HCD_02710 e1888f5b76d0d70ff781954b0f643e49 569 Gene3D G3DSA:2.30.40.10 5 482 1.3E-278 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 HCD_02710 e1888f5b76d0d70ff781954b0f643e49 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 403 418 1.0E-30 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02710 e1888f5b76d0d70ff781954b0f643e49 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 296 313 1.0E-30 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02710 e1888f5b76d0d70ff781954b0f643e49 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 429 442 1.0E-30 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02710 e1888f5b76d0d70ff781954b0f643e49 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 335 351 1.0E-30 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02710 e1888f5b76d0d70ff781954b0f643e49 569 SUPERFAMILY SSF51338 411 480 8.2E-9 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 HCD_02710 e1888f5b76d0d70ff781954b0f643e49 569 SUPERFAMILY SSF51338 3 178 9.72E-65 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 HCD_02710 e1888f5b76d0d70ff781954b0f643e49 569 Pfam PF00449 Urease alpha-subunit, N-terminal domain 2 119 1.8E-52 T 13-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02710 e1888f5b76d0d70ff781954b0f643e49 569 Hamap MF_01953 Urease subunit alpha [ureC]. 1 569 54.382 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02710 e1888f5b76d0d70ff781954b0f643e49 569 SUPERFAMILY SSF51556 131 569 5.5E-180 T 13-10-2018 IPR032466 Metal-dependent hydrolase HCD_02710 e1888f5b76d0d70ff781954b0f643e49 569 Gene3D G3DSA:3.20.20.140 130 569 1.3E-278 T 13-10-2018 HCD_02710 e1888f5b76d0d70ff781954b0f643e49 569 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 2 569 4.2E-273 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_06910 56820f6f2e3422600919a7d14e3ddbd2 503 Pfam PF01966 HD domain 317 408 7.2E-18 T 13-10-2018 IPR006674 HD domain HCD_06910 56820f6f2e3422600919a7d14e3ddbd2 503 Hamap MF_00335 Ribonuclease Y [rny]. 4 500 19.538 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 HCD_06910 56820f6f2e3422600919a7d14e3ddbd2 503 SUPERFAMILY SSF54791 187 273 7.94E-10 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 HCD_06910 56820f6f2e3422600919a7d14e3ddbd2 503 TIGRFAM TIGR00277 HDIG: HDIG domain 313 389 1.1E-23 T 13-10-2018 IPR006675 HDIG domain HCD_06910 56820f6f2e3422600919a7d14e3ddbd2 503 TIGRFAM TIGR03319 RNase_Y: ribonuclease Y 10 499 2.5E-138 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 HCD_06910 56820f6f2e3422600919a7d14e3ddbd2 503 Pfam PF00013 KH domain 193 246 4.6E-6 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 HCD_06910 56820f6f2e3422600919a7d14e3ddbd2 503 SUPERFAMILY SSF109604 305 450 1.66E-25 T 13-10-2018 HCD_06910 56820f6f2e3422600919a7d14e3ddbd2 503 SMART SM00322 188 276 3.2E-4 T 13-10-2018 IPR004087 K Homology domain GO:0003676 HCD_06910 56820f6f2e3422600919a7d14e3ddbd2 503 Gene3D G3DSA:1.10.3210.10 305 464 1.9E-19 T 13-10-2018 HCD_06910 56820f6f2e3422600919a7d14e3ddbd2 503 SMART SM00471 312 418 2.5E-13 T 13-10-2018 IPR003607 HD/PDEase domain HCD_06910 56820f6f2e3422600919a7d14e3ddbd2 503 Gene3D G3DSA:3.30.310.210 129 256 3.4E-5 T 13-10-2018 HCD_06845 3b423e271eb1eb39567a2f3e1b2ed1cc 419 SUPERFAMILY SSF49265 326 414 1.19E-11 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 HCD_06845 3b423e271eb1eb39567a2f3e1b2ed1cc 419 Gene3D G3DSA:2.60.40.10 327 418 1.8E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold HCD_06845 3b423e271eb1eb39567a2f3e1b2ed1cc 419 Gene3D G3DSA:2.60.40.10 142 235 2.8E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold HCD_06845 3b423e271eb1eb39567a2f3e1b2ed1cc 419 Gene3D G3DSA:2.60.40.10 51 141 1.7E-6 T 13-10-2018 IPR013783 Immunoglobulin-like fold HCD_06845 3b423e271eb1eb39567a2f3e1b2ed1cc 419 SMART SM00060 47 127 140.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 HCD_06845 3b423e271eb1eb39567a2f3e1b2ed1cc 419 SMART SM00060 329 406 0.19 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 HCD_06845 3b423e271eb1eb39567a2f3e1b2ed1cc 419 SMART SM00060 140 220 4.3 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 HCD_06845 3b423e271eb1eb39567a2f3e1b2ed1cc 419 SMART SM00060 235 314 28.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 HCD_06845 3b423e271eb1eb39567a2f3e1b2ed1cc 419 Gene3D G3DSA:2.60.40.10 236 319 2.9E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold HCD_06845 3b423e271eb1eb39567a2f3e1b2ed1cc 419 SUPERFAMILY SSF49265 156 290 5.42E-11 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 HCD_06845 3b423e271eb1eb39567a2f3e1b2ed1cc 419 SUPERFAMILY SSF49265 74 183 2.68E-8 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 HCD_04005 4d8dbcb51baea201df9bd34d40342364 131 Gene3D G3DSA:3.30.1490.10 78 131 1.7E-24 T 13-10-2018 HCD_04005 4d8dbcb51baea201df9bd34d40342364 131 ProSitePatterns PS00053 Ribosomal protein S8 signature. 101 118 - T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04005 4d8dbcb51baea201df9bd34d40342364 131 Gene3D G3DSA:3.30.1370.30 3 77 1.4E-19 T 13-10-2018 HCD_04005 4d8dbcb51baea201df9bd34d40342364 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 1 131 27.495 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04005 4d8dbcb51baea201df9bd34d40342364 131 SUPERFAMILY SSF56047 1 131 7.19E-42 T 13-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04005 4d8dbcb51baea201df9bd34d40342364 131 Pfam PF00410 Ribosomal protein S8 4 131 2.9E-44 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_01930 109c90ddc0f772264e166ffad9bb6b60 673 Gene3D G3DSA:1.10.10.160 106 187 3.8E-61 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily HCD_01930 109c90ddc0f772264e166ffad9bb6b60 673 Gene3D G3DSA:3.40.50.300 270 666 2.2E-59 T 13-10-2018 HCD_01930 109c90ddc0f772264e166ffad9bb6b60 673 Pfam PF00580 UvrD/REP helicase N-terminal domain 7 261 4.9E-53 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 HCD_01930 109c90ddc0f772264e166ffad9bb6b60 673 Gene3D G3DSA:3.40.50.300 7 261 3.8E-61 T 13-10-2018 HCD_01930 109c90ddc0f772264e166ffad9bb6b60 673 Pfam PF13361 UvrD-like helicase C-terminal domain 267 647 4.8E-45 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 HCD_01930 109c90ddc0f772264e166ffad9bb6b60 673 Gene3D G3DSA:1.10.486.10 368 576 2.2E-59 T 13-10-2018 HCD_01930 109c90ddc0f772264e166ffad9bb6b60 673 SUPERFAMILY SSF52540 5 666 5.83E-113 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_05805 a185cea50db55f2c4b1fe7cad0ef2b40 255 SUPERFAMILY SSF103088 113 233 4.58E-24 T 13-10-2018 IPR036737 OmpA-like domain superfamily HCD_05805 a185cea50db55f2c4b1fe7cad0ef2b40 255 Pfam PF00691 OmpA family 129 226 7.1E-13 T 13-10-2018 IPR006665 OmpA-like domain HCD_05805 a185cea50db55f2c4b1fe7cad0ef2b40 255 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 4 54 8.0E-15 T 13-10-2018 IPR025713 Motility protein B, N-terminal domain HCD_05805 a185cea50db55f2c4b1fe7cad0ef2b40 255 Gene3D G3DSA:3.30.1330.60 93 255 4.8E-52 T 13-10-2018 IPR036737 OmpA-like domain superfamily HCD_03605 8c0d686d5feef974340dedd8284ada2b 199 Hamap MF_01389 Urease accessory protein UreG [ureG]. 1 198 46.124 T 13-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 HCD_03605 8c0d686d5feef974340dedd8284ada2b 199 Gene3D G3DSA:3.40.50.300 1 198 3.0E-53 T 13-10-2018 HCD_03605 8c0d686d5feef974340dedd8284ada2b 199 SUPERFAMILY SSF52540 3 193 1.22E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_03605 8c0d686d5feef974340dedd8284ada2b 199 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 4 174 5.5E-40 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain HCD_03605 8c0d686d5feef974340dedd8284ada2b 199 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 1 199 8.7E-123 T 13-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 HCD_03605 8c0d686d5feef974340dedd8284ada2b 199 PIRSF PIRSF005624 1 198 2.7E-53 T 13-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 Gene3D G3DSA:1.25.40.10 27 240 2.5E-65 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 SUPERFAMILY SSF81901 35 236 1.99E-49 T 13-10-2018 HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 SUPERFAMILY SSF81901 244 373 2.09E-37 T 13-10-2018 HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 Pfam PF08238 Sel1 repeat 299 330 2.5E-7 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 Pfam PF08238 Sel1 repeat 48 80 4.8E-7 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 Pfam PF08238 Sel1 repeat 335 369 1.2E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 Pfam PF08238 Sel1 repeat 156 188 4.1E-4 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 Pfam PF08238 Sel1 repeat 84 115 1.9E-5 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 Pfam PF08238 Sel1 repeat 229 261 0.0014 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 Pfam PF08238 Sel1 repeat 265 297 0.011 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 Pfam PF08238 Sel1 repeat 118 152 2.6E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 Pfam PF08238 Sel1 repeat 195 224 1.6E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 SMART SM00671 262 297 9.5E-7 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 SMART SM00671 190 225 5.3E-11 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 SMART SM00671 154 189 1.9E-7 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 SMART SM00671 298 333 6.5E-11 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 SMART SM00671 334 369 2.0E-8 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 SMART SM00671 46 81 1.9E-10 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 SMART SM00671 226 261 1.8E-8 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 SMART SM00671 82 117 5.4E-9 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 SMART SM00671 118 153 1.4E-9 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06370 8d6a0c91a0cb1536a72fdff832996d10 381 Gene3D G3DSA:1.25.40.10 241 381 8.1E-42 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_06715 01c645abc04f40d48732184d0680509c 492 SUPERFAMILY SSF53649 3 488 8.72E-62 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 HCD_06715 01c645abc04f40d48732184d0680509c 492 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 81 285 1.2E-64 T 13-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_06715 01c645abc04f40d48732184d0680509c 492 PIRSF PIRSF001492 1 492 7.8E-187 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_06715 01c645abc04f40d48732184d0680509c 492 SUPERFAMILY SSF64158 76 295 4.05E-75 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_06715 01c645abc04f40d48732184d0680509c 492 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 3 489 8.7E-219 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_06715 01c645abc04f40d48732184d0680509c 492 Gene3D G3DSA:3.40.720.10 5 488 1.1E-189 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 HCD_06715 01c645abc04f40d48732184d0680509c 492 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 3 492 42.815 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_06715 01c645abc04f40d48732184d0680509c 492 Gene3D G3DSA:3.40.1450.10 76 297 1.1E-189 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 HCD_06715 01c645abc04f40d48732184d0680509c 492 Pfam PF01676 Metalloenzyme superfamily 4 482 2.2E-72 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 HCD_05420 1b45394bebdf380376051cb485580c7a 227 SUPERFAMILY SSF75217 64 223 1.37E-32 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases HCD_05420 1b45394bebdf380376051cb485580c7a 227 Gene3D G3DSA:3.40.1280.10 73 227 1.5E-34 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal HCD_05420 1b45394bebdf380376051cb485580c7a 227 SUPERFAMILY SSF55315 3 71 1.65E-10 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like HCD_05420 1b45394bebdf380376051cb485580c7a 227 Pfam PF00588 SpoU rRNA Methylase family 87 223 6.5E-27 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 HCD_05420 1b45394bebdf380376051cb485580c7a 227 Gene3D G3DSA:3.30.1330.30 1 71 1.1E-6 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like HCD_05420 1b45394bebdf380376051cb485580c7a 227 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 1 226 4.4E-67 T 13-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 HCD_05420 1b45394bebdf380376051cb485580c7a 227 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 4 73 2.9E-13 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 HCD_05420 1b45394bebdf380376051cb485580c7a 227 SMART SM00967 4 76 1.9E-11 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 HCD_08420 a19efb2cea024d2849c8336faeffe967 246 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 6 242 3.6E-93 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 HCD_08420 a19efb2cea024d2849c8336faeffe967 246 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 188 205 - T 13-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 HCD_08420 a19efb2cea024d2849c8336faeffe967 246 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 4 243 35.44 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 HCD_08420 a19efb2cea024d2849c8336faeffe967 246 SUPERFAMILY SSF64005 3 237 8.37E-73 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 HCD_08420 a19efb2cea024d2849c8336faeffe967 246 Pfam PF01255 Putative undecaprenyl diphosphate synthase 11 242 3.2E-72 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 HCD_08420 a19efb2cea024d2849c8336faeffe967 246 Gene3D G3DSA:3.40.1180.10 1 246 3.2E-86 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 HCD_00020 58509040e09f5014ab94a19998968cf3 212 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 78 98 - T 13-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 HCD_00020 58509040e09f5014ab94a19998968cf3 212 Gene3D G3DSA:3.40.1050.10 1 204 2.0E-61 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 HCD_00020 58509040e09f5014ab94a19998968cf3 212 SMART SM00947 19 194 3.7E-61 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 HCD_00020 58509040e09f5014ab94a19998968cf3 212 SUPERFAMILY SSF53056 2 204 1.24E-58 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 HCD_00020 58509040e09f5014ab94a19998968cf3 212 Pfam PF00484 Carbonic anhydrase 26 190 1.3E-47 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 HCD_07165 c4af0c69590b521f032a1810ec6251ab 268 SMART SM00382 38 230 6.8E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_07165 c4af0c69590b521f032a1810ec6251ab 268 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 262 2.6E-6 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 HCD_07165 c4af0c69590b521f032a1810ec6251ab 268 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_07165 c4af0c69590b521f032a1810ec6251ab 268 Pfam PF00005 ABC transporter 29 180 1.4E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_07165 c4af0c69590b521f032a1810ec6251ab 268 Gene3D G3DSA:3.40.50.300 1 268 3.4E-88 T 13-10-2018 HCD_07165 c4af0c69590b521f032a1810ec6251ab 268 SUPERFAMILY SSF52540 3 252 3.27E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04565 aaebba2f103a59972364f5d0c30a4760 967 Pfam PF04851 Type III restriction enzyme, res subunit 8 235 1.8E-19 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 HCD_04565 aaebba2f103a59972364f5d0c30a4760 967 SUPERFAMILY SSF52540 34 267 1.08E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04565 aaebba2f103a59972364f5d0c30a4760 967 Gene3D G3DSA:3.40.50.300 363 550 1.2E-9 T 13-10-2018 HCD_04565 aaebba2f103a59972364f5d0c30a4760 967 Gene3D G3DSA:3.40.50.300 36 249 1.7E-11 T 13-10-2018 HCD_04565 aaebba2f103a59972364f5d0c30a4760 967 SUPERFAMILY SSF52540 79 527 4.43E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_03435 144d624974ee895ad5140752829230f2 212 SUPERFAMILY SSF53639 14 195 2.35E-23 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily HCD_03435 144d624974ee895ad5140752829230f2 212 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 21 193 8.5E-20 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal HCD_03435 144d624974ee895ad5140752829230f2 212 SMART SM01007 17 195 1.1E-14 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal HCD_03435 144d624974ee895ad5140752829230f2 212 Gene3D G3DSA:3.40.225.10 10 201 2.4E-17 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 Pfam PF01131 DNA topoisomerase 133 555 3.8E-83 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 Pfam PF01751 Toprim domain 6 114 2.2E-15 T 13-10-2018 IPR006171 TOPRIM domain HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 SUPERFAMILY SSF56712 6 555 6.67E-112 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 Gene3D G3DSA:1.10.290.10 262 390 8.6E-86 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 SMART SM00437 254 521 1.4E-70 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 SMART SM00493 4 104 2.3E-17 T 13-10-2018 IPR006171 TOPRIM domain HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 376 392 1.7E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 482 496 1.7E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 78 91 1.7E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 167 185 1.7E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 296 305 1.7E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 Gene3D G3DSA:3.40.50.140 2 132 1.7E-22 T 13-10-2018 HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 SMART SM00436 105 196 1.3E-31 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 Gene3D G3DSA:2.70.20.10 189 465 8.6E-86 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 HCD_07935 3b0c85bb2b392902296c91ae844b3ac3 558 Gene3D G3DSA:1.10.460.10 143 555 8.6E-86 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 HCD_04345 8cae8041645a40d6c9b92900c020b0fd 265 Gene3D G3DSA:3.60.110.10 16 264 3.4E-28 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily HCD_04345 8cae8041645a40d6c9b92900c020b0fd 265 SUPERFAMILY SSF56317 13 260 1.7E-33 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily HCD_04345 8cae8041645a40d6c9b92900c020b0fd 265 Pfam PF00795 Carbon-nitrogen hydrolase 27 255 7.0E-18 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 HCD_04105 09438791aa2fbb13ffa9bc045e5efddf 539 Pfam PF13483 Beta-lactamase superfamily domain 116 194 1.4E-9 T 13-10-2018 HCD_04105 09438791aa2fbb13ffa9bc045e5efddf 539 Gene3D G3DSA:2.102.10.10 10 95 4.0E-5 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 HCD_04105 09438791aa2fbb13ffa9bc045e5efddf 539 Gene3D G3DSA:3.60.15.10 111 248 2.0E-20 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like HCD_04105 09438791aa2fbb13ffa9bc045e5efddf 539 SUPERFAMILY SSF56281 115 268 2.9E-12 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like HCD_07100 7d3348bfeb2e3bacc75c2acd5142967d 390 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 388 2.5E-114 T 13-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain HCD_07100 7d3348bfeb2e3bacc75c2acd5142967d 390 SUPERFAMILY SSF56059 11 387 7.42E-58 T 13-10-2018 HCD_07100 7d3348bfeb2e3bacc75c2acd5142967d 390 SUPERFAMILY SSF52440 178 288 1.38E-13 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily HCD_07100 7d3348bfeb2e3bacc75c2acd5142967d 390 Gene3D G3DSA:3.30.1490.330 272 350 4.5E-20 T 13-10-2018 HCD_00125 ae17b35530c7258aa083ec361d691d4b 137 SUPERFAMILY SSF52402 2 137 6.61E-19 T 13-10-2018 HCD_00125 ae17b35530c7258aa083ec361d691d4b 137 Pfam PF00582 Universal stress protein family 2 137 1.1E-16 T 13-10-2018 IPR006016 UspA HCD_00125 ae17b35530c7258aa083ec361d691d4b 137 Gene3D G3DSA:3.40.50.620 1 137 9.6E-32 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_00515 1f752297c4ad385dba3db1b4b892116e 230 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 7 218 1.7E-43 T 13-10-2018 IPR005519 Acid phosphatase, class B-like HCD_00515 1f752297c4ad385dba3db1b4b892116e 230 PIRSF PIRSF019271 1 230 6.0E-82 T 13-10-2018 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 HCD_00515 1f752297c4ad385dba3db1b4b892116e 230 TIGRFAM TIGR01533 lipo_e_P4: 5'-nucleotidase, lipoprotein e(P4) family 13 220 1.1E-86 T 13-10-2018 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 HCD_00515 1f752297c4ad385dba3db1b4b892116e 230 Gene3D G3DSA:3.40.50.1000 2 230 1.2E-70 T 13-10-2018 IPR023214 HAD superfamily HCD_00515 1f752297c4ad385dba3db1b4b892116e 230 SUPERFAMILY SSF56784 30 226 7.19E-43 T 13-10-2018 IPR036412 HAD-like superfamily HCD_01720 1ac5023cf7c03251fbd615e0e9e0df7a 533 Gene3D G3DSA:3.40.50.300 285 533 1.1E-53 T 13-10-2018 HCD_01720 1ac5023cf7c03251fbd615e0e9e0df7a 533 SUPERFAMILY SSF52540 6 239 6.86E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01720 1ac5023cf7c03251fbd615e0e9e0df7a 533 SUPERFAMILY SSF52540 304 514 1.08E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01720 1ac5023cf7c03251fbd615e0e9e0df7a 533 Gene3D G3DSA:3.40.50.300 2 284 5.6E-53 T 13-10-2018 HCD_01720 1ac5023cf7c03251fbd615e0e9e0df7a 533 Pfam PF00005 ABC transporter 18 186 3.4E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_01720 1ac5023cf7c03251fbd615e0e9e0df7a 533 Pfam PF12848 ABC transporter 226 309 2.6E-19 T 13-10-2018 IPR032781 ABC-transporter extension domain HCD_01720 1ac5023cf7c03251fbd615e0e9e0df7a 533 SMART SM00382 346 513 4.0E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_01720 1ac5023cf7c03251fbd615e0e9e0df7a 533 SMART SM00382 26 230 1.5E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_01720 1ac5023cf7c03251fbd615e0e9e0df7a 533 Pfam PF00005 ABC transporter 337 468 3.1E-21 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_04165 5caaadb0c976eeafddef90b1694d3c17 383 SMART SM00387 274 383 0.0031 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase HCD_04165 5caaadb0c976eeafddef90b1694d3c17 383 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 278 364 2.0E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase HCD_04165 5caaadb0c976eeafddef90b1694d3c17 383 SUPERFAMILY SSF47384 168 226 2.75E-6 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 HCD_04165 5caaadb0c976eeafddef90b1694d3c17 383 Gene3D G3DSA:1.10.287.130 178 231 2.9E-18 T 13-10-2018 HCD_04165 5caaadb0c976eeafddef90b1694d3c17 383 SMART SM00388 174 232 1.7E-5 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 HCD_04165 5caaadb0c976eeafddef90b1694d3c17 383 Gene3D G3DSA:3.30.565.10 232 370 2.9E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily HCD_04165 5caaadb0c976eeafddef90b1694d3c17 383 SUPERFAMILY SSF55874 238 370 1.74E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily HCD_04505 9ac49fa324d36df49a784f56fac9d0b1 220 Pfam PF02660 Glycerol-3-phosphate acyltransferase 18 210 2.5E-40 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 HCD_04505 9ac49fa324d36df49a784f56fac9d0b1 220 SMART SM01207 17 212 1.3E-63 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 HCD_04505 9ac49fa324d36df49a784f56fac9d0b1 220 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 14 220 18.191 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 HCD_04505 9ac49fa324d36df49a784f56fac9d0b1 220 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 9 219 1.4E-68 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 HCD_03540 fb2f468ebaf3a4d0d70b41d895da0d1a 129 SUPERFAMILY SSF54211 3 129 1.02E-41 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_03540 fb2f468ebaf3a4d0d70b41d895da0d1a 129 Pfam PF00380 Ribosomal protein S9/S16 8 129 1.2E-41 T 13-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 HCD_03540 fb2f468ebaf3a4d0d70b41d895da0d1a 129 ProSitePatterns PS00360 Ribosomal protein S9 signature. 68 86 - T 13-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 HCD_03540 fb2f468ebaf3a4d0d70b41d895da0d1a 129 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 129 28.366 T 13-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid HCD_03540 fb2f468ebaf3a4d0d70b41d895da0d1a 129 Gene3D G3DSA:3.30.230.10 1 129 4.6E-45 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup HCD_07805 6de1d4fe5e5744d365555708c2d360a7 322 Gene3D G3DSA:3.50.50.60 5 298 5.1E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_07805 6de1d4fe5e5744d365555708c2d360a7 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 158 182 8.1E-17 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 HCD_07805 6de1d4fe5e5744d365555708c2d360a7 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 8.1E-17 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 HCD_07805 6de1d4fe5e5744d365555708c2d360a7 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 122 130 8.1E-17 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 HCD_07805 6de1d4fe5e5744d365555708c2d360a7 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 283 301 8.1E-17 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 HCD_07805 6de1d4fe5e5744d365555708c2d360a7 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 244 260 7.0E-15 T 13-10-2018 HCD_07805 6de1d4fe5e5744d365555708c2d360a7 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 7.0E-15 T 13-10-2018 HCD_07805 6de1d4fe5e5744d365555708c2d360a7 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 273 295 7.0E-15 T 13-10-2018 HCD_07805 6de1d4fe5e5744d365555708c2d360a7 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 162 180 7.0E-15 T 13-10-2018 HCD_07805 6de1d4fe5e5744d365555708c2d360a7 322 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 7 292 3.5E-46 T 13-10-2018 HCD_07805 6de1d4fe5e5744d365555708c2d360a7 322 Gene3D G3DSA:3.50.50.60 134 251 5.1E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_07805 6de1d4fe5e5744d365555708c2d360a7 322 SUPERFAMILY SSF51905 5 321 2.92E-31 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_02700 8023055ebe5e9662ca167ecc8e130a2f 165 Gene3D G3DSA:2.30.30.40 33 155 2.4E-35 T 13-10-2018 HCD_02700 8023055ebe5e9662ca167ecc8e130a2f 165 SMART SM00260 25 161 1.9E-47 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 HCD_02700 8023055ebe5e9662ca167ecc8e130a2f 165 Pfam PF01584 CheW-like domain 29 163 3.0E-36 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 HCD_02700 8023055ebe5e9662ca167ecc8e130a2f 165 Gene3D G3DSA:2.40.50.180 48 156 2.4E-35 T 13-10-2018 HCD_02700 8023055ebe5e9662ca167ecc8e130a2f 165 SUPERFAMILY SSF50341 23 163 6.54E-38 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 HCD_07580 a2e9b05ae3d1872cd071a9ed7a919d5c 283 SUPERFAMILY SSF140931 53 207 6.54E-34 T 13-10-2018 IPR036597 Fido-like domain superfamily HCD_07580 a2e9b05ae3d1872cd071a9ed7a919d5c 283 Gene3D G3DSA:1.10.3290.10 5 238 5.1E-50 T 13-10-2018 IPR036597 Fido-like domain superfamily HCD_07580 a2e9b05ae3d1872cd071a9ed7a919d5c 283 Pfam PF02661 Fic/DOC family 78 174 1.9E-18 T 13-10-2018 IPR003812 Fido domain HCD_08340 a2e9b05ae3d1872cd071a9ed7a919d5c 283 SUPERFAMILY SSF140931 53 207 6.54E-34 T 13-10-2018 IPR036597 Fido-like domain superfamily HCD_08340 a2e9b05ae3d1872cd071a9ed7a919d5c 283 Gene3D G3DSA:1.10.3290.10 5 238 5.1E-50 T 13-10-2018 IPR036597 Fido-like domain superfamily HCD_08340 a2e9b05ae3d1872cd071a9ed7a919d5c 283 Pfam PF02661 Fic/DOC family 78 174 1.9E-18 T 13-10-2018 IPR003812 Fido domain HCD_00650 727980568a81dca8288defad3c8c32c8 113 Pfam PF02410 Ribosomal silencing factor during starvation 7 99 6.5E-19 T 13-10-2018 HCD_00650 727980568a81dca8288defad3c8c32c8 113 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 1 102 17.933 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS HCD_00650 727980568a81dca8288defad3c8c32c8 113 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 5 100 2.4E-25 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS HCD_00650 727980568a81dca8288defad3c8c32c8 113 Gene3D G3DSA:3.30.460.10 1 113 3.5E-21 T 13-10-2018 HCD_00650 727980568a81dca8288defad3c8c32c8 113 SUPERFAMILY SSF81301 3 101 8.5E-24 T 13-10-2018 HCD_06740 90593ab6978ed66c3daa08ddf3835cfe 191 Gene3D G3DSA:3.40.50.11650 86 100 2.6E-56 T 13-10-2018 HCD_06740 90593ab6978ed66c3daa08ddf3835cfe 191 Gene3D G3DSA:3.40.50.11660 2 85 2.6E-56 T 13-10-2018 IPR038577 GT10-like superfamily HCD_06740 90593ab6978ed66c3daa08ddf3835cfe 191 Pfam PF00852 Glycosyltransferase family 10 (fucosyltransferase) C-term 5 65 2.0E-10 T 13-10-2018 IPR001503 Glycosyl transferase family 10 GO:0006486|GO:0008417|GO:0016020 HCD_06740 90593ab6978ed66c3daa08ddf3835cfe 191 SUPERFAMILY SSF53756 3 96 7.85E-26 T 13-10-2018 HCD_04870 2514febeb3aa18a4b0295468985f6d06 342 Gene3D G3DSA:3.40.50.620 1 202 2.0E-62 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_04870 2514febeb3aa18a4b0295468985f6d06 342 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 341 9.2E-127 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 HCD_04870 2514febeb3aa18a4b0295468985f6d06 342 Gene3D G3DSA:2.30.30.280 207 267 1.7E-17 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 HCD_04870 2514febeb3aa18a4b0295468985f6d06 342 Pfam PF03054 tRNA methyl transferase 1 341 2.0E-112 T 13-10-2018 HCD_04870 2514febeb3aa18a4b0295468985f6d06 342 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 1 342 35.233 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 HCD_04870 2514febeb3aa18a4b0295468985f6d06 342 SUPERFAMILY SSF52402 1 236 1.37E-42 T 13-10-2018 HCD_04870 2514febeb3aa18a4b0295468985f6d06 342 Gene3D G3DSA:2.40.30.10 268 342 2.5E-14 T 13-10-2018 HCD_04765 0a759aa110f91d901c30c2e5f65d3e24 308 Pfam PF00491 Arginase family 2 292 1.9E-42 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 HCD_04765 0a759aa110f91d901c30c2e5f65d3e24 308 Gene3D G3DSA:3.40.800.10 1 308 6.9E-101 T 13-10-2018 HCD_04765 0a759aa110f91d901c30c2e5f65d3e24 308 TIGRFAM TIGR01229 rocF_arginase: arginase 3 307 3.9E-104 T 13-10-2018 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: R-HSA-70635 HCD_04765 0a759aa110f91d901c30c2e5f65d3e24 308 SUPERFAMILY SSF52768 2 298 4.68E-46 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily HCD_01115 1310e0230460adda8c511668454d18b1 170 Gene3D G3DSA:1.20.120.1430 14 111 2.3E-32 T 13-10-2018 HCD_01115 1310e0230460adda8c511668454d18b1 170 Pfam PF06518 Protein of unknown function (DUF1104) 21 106 2.3E-25 T 13-10-2018 IPR009488 Protein of unknown function DUF1104 HCD_06705 0472157587c5cfc6ce4153f0a50a143a 711 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 421 440 3.5E-35 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06705 0472157587c5cfc6ce4153f0a50a143a 711 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 3.5E-35 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06705 0472157587c5cfc6ce4153f0a50a143a 711 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 266 281 3.5E-35 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06705 0472157587c5cfc6ce4153f0a50a143a 711 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 3.5E-35 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06705 0472157587c5cfc6ce4153f0a50a143a 711 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 339 355 3.5E-35 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06705 0472157587c5cfc6ce4153f0a50a143a 711 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 572 6.3E-161 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06705 0472157587c5cfc6ce4153f0a50a143a 711 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 709 2.4E-258 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06705 0472157587c5cfc6ce4153f0a50a143a 711 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 709 22.15 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_01765 f27a41b323529866b7a7e37cbeae693a 463 Gene3D G3DSA:3.40.50.620 308 463 1.9E-42 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_01765 f27a41b323529866b7a7e37cbeae693a 463 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 326 458 6.3E-60 T 13-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 HCD_01765 f27a41b323529866b7a7e37cbeae693a 463 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 2 308 1.4E-118 T 13-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 HCD_01765 f27a41b323529866b7a7e37cbeae693a 463 SUPERFAMILY SSF52374 331 457 2.02E-25 T 13-10-2018 HCD_01765 f27a41b323529866b7a7e37cbeae693a 463 SUPERFAMILY SSF53613 3 311 7.17E-57 T 13-10-2018 IPR029056 Ribokinase-like HCD_01765 f27a41b323529866b7a7e37cbeae693a 463 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 42 65 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 HCD_01765 f27a41b323529866b7a7e37cbeae693a 463 Hamap MF_01603 Bifunctional protein HldE [hldE]. 1 460 38.901 T 13-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 HCD_01765 f27a41b323529866b7a7e37cbeae693a 463 Gene3D G3DSA:3.40.1190.20 1 305 7.3E-100 T 13-10-2018 IPR029056 Ribokinase-like HCD_01765 f27a41b323529866b7a7e37cbeae693a 463 Pfam PF01467 Cytidylyltransferase-like 335 428 3.5E-17 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 HCD_01765 f27a41b323529866b7a7e37cbeae693a 463 Pfam PF00294 pfkB family carbohydrate kinase 1 298 2.0E-57 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB HCD_01765 f27a41b323529866b7a7e37cbeae693a 463 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 332 397 4.3E-16 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 HCD_04265 22a8d113949361c88337d30555a274c4 330 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 143 161 4.0E-35 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04265 22a8d113949361c88337d30555a274c4 330 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 4.0E-35 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04265 22a8d113949361c88337d30555a274c4 330 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 226 243 4.0E-35 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04265 22a8d113949361c88337d30555a274c4 330 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 266 281 4.0E-35 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04265 22a8d113949361c88337d30555a274c4 330 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 170 186 4.0E-35 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04265 22a8d113949361c88337d30555a274c4 330 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 1.6E-27 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04265 22a8d113949361c88337d30555a274c4 330 Gene3D G3DSA:3.40.50.720 4 326 3.8E-125 T 13-10-2018 HCD_04265 22a8d113949361c88337d30555a274c4 330 Gene3D G3DSA:3.30.360.10 148 312 3.8E-125 T 13-10-2018 HCD_04265 22a8d113949361c88337d30555a274c4 330 SUPERFAMILY SSF55347 149 311 1.88E-58 T 13-10-2018 HCD_04265 22a8d113949361c88337d30555a274c4 330 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 310 1.1E-57 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04265 22a8d113949361c88337d30555a274c4 330 PIRSF PIRSF000149 1 330 2.6E-126 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04265 22a8d113949361c88337d30555a274c4 330 SMART SM00846 3 149 3.9E-65 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04265 22a8d113949361c88337d30555a274c4 330 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 322 9.4E-124 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04265 22a8d113949361c88337d30555a274c4 330 SUPERFAMILY SSF51735 3 165 2.03E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_03960 6a7383aae287468ba3899a7322d6c7a8 120 SUPERFAMILY SSF46946 2 118 4.27E-43 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 HCD_03960 6a7383aae287468ba3899a7322d6c7a8 120 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 119 26.499 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_03960 6a7383aae287468ba3899a7322d6c7a8 120 Gene3D G3DSA:1.10.8.50 1 72 3.7E-29 T 13-10-2018 HCD_03960 6a7383aae287468ba3899a7322d6c7a8 120 Gene3D G3DSA:4.10.910.10 73 118 6.6E-24 T 13-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_03960 6a7383aae287468ba3899a7322d6c7a8 120 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 13-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_03960 6a7383aae287468ba3899a7322d6c7a8 120 Pfam PF00416 Ribosomal protein S13/S18 3 109 5.8E-32 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_03960 6a7383aae287468ba3899a7322d6c7a8 120 PIRSF PIRSF002134 1 120 2.8E-43 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_03960 6a7383aae287468ba3899a7322d6c7a8 120 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 115 6.2E-52 T 13-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_07715 1d0082df34ce41a7d25090b9d01841f1 158 Gene3D G3DSA:3.90.79.10 2 154 4.6E-38 T 13-10-2018 HCD_07715 1d0082df34ce41a7d25090b9d01841f1 158 SUPERFAMILY SSF55811 3 151 4.2E-27 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 HCD_07715 1d0082df34ce41a7d25090b9d01841f1 158 ProSitePatterns PS00893 Nudix box signature. 43 64 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 HCD_07715 1d0082df34ce41a7d25090b9d01841f1 158 Pfam PF00293 NUDIX domain 7 145 1.6E-22 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 HCD_07715 1d0082df34ce41a7d25090b9d01841f1 158 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 155 30.252 T 13-10-2018 IPR022927 RNA pyrophosphohydrolase RppH HCD_07715 1d0082df34ce41a7d25090b9d01841f1 158 PRINTS PR00502 NUDIX hydrolase family signature 38 52 7.4E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 HCD_07715 1d0082df34ce41a7d25090b9d01841f1 158 PRINTS PR00502 NUDIX hydrolase family signature 52 67 7.4E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 HCD_06670 15562069f7dacfaa942cebcc0481761e 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 5.1E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06670 15562069f7dacfaa942cebcc0481761e 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 5.1E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06670 15562069f7dacfaa942cebcc0481761e 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 5.1E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06670 15562069f7dacfaa942cebcc0481761e 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 5.1E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06670 15562069f7dacfaa942cebcc0481761e 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 5.1E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06670 15562069f7dacfaa942cebcc0481761e 280 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 HCD_06670 15562069f7dacfaa942cebcc0481761e 280 Gene3D G3DSA:3.40.50.720 5 257 3.5E-53 T 13-10-2018 HCD_06670 15562069f7dacfaa942cebcc0481761e 280 Pfam PF00106 short chain dehydrogenase 9 190 1.2E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06670 15562069f7dacfaa942cebcc0481761e 280 SUPERFAMILY SSF51735 7 275 2.91E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_06670 15562069f7dacfaa942cebcc0481761e 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 2.2E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06670 15562069f7dacfaa942cebcc0481761e 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 2.2E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06670 15562069f7dacfaa942cebcc0481761e 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.2E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_02915 7b2e7589e0119e45ada591fb2f9eb923 580 Pfam PF00005 ABC transporter 386 533 1.7E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_02915 7b2e7589e0119e45ada591fb2f9eb923 580 Gene3D G3DSA:3.40.50.300 368 570 3.7E-88 T 13-10-2018 HCD_02915 7b2e7589e0119e45ada591fb2f9eb923 580 SUPERFAMILY SSF52540 361 573 1.2E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02915 7b2e7589e0119e45ada591fb2f9eb923 580 ProSitePatterns PS00211 ABC transporters family signature. 505 519 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_02915 7b2e7589e0119e45ada591fb2f9eb923 580 SUPERFAMILY SSF90123 26 518 2.49E-28 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 HCD_02915 7b2e7589e0119e45ada591fb2f9eb923 580 SMART SM00382 395 579 7.7E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_02915 7b2e7589e0119e45ada591fb2f9eb923 580 Gene3D G3DSA:1.20.1560.10 108 367 3.7E-88 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 HCD_04300 1f2eeaf71dfe2bf019f04168cc7d6838 680 SUPERFAMILY SSF53335 252 670 4.94E-50 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_04300 1f2eeaf71dfe2bf019f04168cc7d6838 680 Gene3D G3DSA:3.40.50.150 341 639 2.6E-34 T 13-10-2018 HCD_04300 1f2eeaf71dfe2bf019f04168cc7d6838 680 Pfam PF08774 VRR-NUC domain 3 97 7.2E-10 T 13-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 HCD_04300 1f2eeaf71dfe2bf019f04168cc7d6838 680 Pfam PF02384 N-6 DNA Methylase 496 600 6.8E-6 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 HCD_04300 1f2eeaf71dfe2bf019f04168cc7d6838 680 Pfam PF02384 N-6 DNA Methylase 359 491 1.6E-11 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 HCD_03295 131d6b0395d61fd2a62bf70e8f856ec9 185 PIRSF PIRSF006305 1 184 1.2E-38 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 HCD_03295 131d6b0395d61fd2a62bf70e8f856ec9 185 SUPERFAMILY SSF52972 2 181 2.68E-33 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like HCD_03295 131d6b0395d61fd2a62bf70e8f856ec9 185 Pfam PF02545 Maf-like protein 3 182 3.6E-23 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 HCD_03295 131d6b0395d61fd2a62bf70e8f856ec9 185 Gene3D G3DSA:3.90.950.10 2 184 2.7E-29 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like HCD_03295 131d6b0395d61fd2a62bf70e8f856ec9 185 TIGRFAM TIGR00172 maf: septum formation protein Maf 1 182 6.5E-59 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 HCD_00825 78d1ca4ad615c6e6e0e00cf00d44f65a 450 Pfam PF12631 MnmE helical domain 120 447 3.2E-29 T 13-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 HCD_00825 78d1ca4ad615c6e6e0e00cf00d44f65a 450 Pfam PF01926 50S ribosome-binding GTPase 217 330 2.0E-26 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_00825 78d1ca4ad615c6e6e0e00cf00d44f65a 450 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 215 348 2.3E-29 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 HCD_00825 78d1ca4ad615c6e6e0e00cf00d44f65a 450 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 283 301 8.6E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_00825 78d1ca4ad615c6e6e0e00cf00d44f65a 450 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 216 236 8.6E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 HCD_00825 78d1ca4ad615c6e6e0e00cf00d44f65a 450 Pfam PF10396 GTP-binding protein TrmE N-terminus 4 117 7.3E-38 T 13-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 HCD_00825 78d1ca4ad615c6e6e0e00cf00d44f65a 450 Gene3D G3DSA:3.30.1360.120 1 118 5.5E-43 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 HCD_00825 78d1ca4ad615c6e6e0e00cf00d44f65a 450 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 3 450 29.019 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 HCD_00825 78d1ca4ad615c6e6e0e00cf00d44f65a 450 Gene3D G3DSA:1.20.120.430 119 450 2.0E-82 T 13-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 HCD_00825 78d1ca4ad615c6e6e0e00cf00d44f65a 450 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 9 450 1.8E-173 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 HCD_00825 78d1ca4ad615c6e6e0e00cf00d44f65a 450 SUPERFAMILY SSF52540 70 348 2.07E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_00825 78d1ca4ad615c6e6e0e00cf00d44f65a 450 Gene3D G3DSA:3.40.50.300 214 381 2.0E-82 T 13-10-2018 HCD_02250 c0612d87e7ba15a5973ce749a44458b3 124 Pfam PF10137 Predicted nucleotide-binding protein containing TIR-like domain 9 120 4.5E-26 T 13-10-2018 IPR019302 Nucleotide-binding protein, predicted, TIR-like domain HCD_06090 23c4b1ed798ac33aacd18e5a43fee96c 123 SMART SM00422 9 78 1.3E-26 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 HCD_06090 23c4b1ed798ac33aacd18e5a43fee96c 123 Gene3D G3DSA:1.10.1660.10 8 100 1.3E-24 T 13-10-2018 HCD_06090 23c4b1ed798ac33aacd18e5a43fee96c 123 SUPERFAMILY SSF46955 9 103 1.74E-19 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily HCD_06090 23c4b1ed798ac33aacd18e5a43fee96c 123 Pfam PF13411 MerR HTH family regulatory protein 9 76 1.5E-16 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 HCD_06090 23c4b1ed798ac33aacd18e5a43fee96c 123 ProSitePatterns PS00552 MerR-type HTH domain signature. 12 34 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 HCD_05625 685e9dc5f406a1f3b8ea07f0715b7ed8 254 SUPERFAMILY SSF54862 41 221 1.98E-24 T 13-10-2018 HCD_05625 685e9dc5f406a1f3b8ea07f0715b7ed8 254 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 58 69 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_05625 685e9dc5f406a1f3b8ea07f0715b7ed8 254 Pfam PF12838 4Fe-4S dicluster domain 57 112 1.5E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_05625 685e9dc5f406a1f3b8ea07f0715b7ed8 254 Pfam PF12838 4Fe-4S dicluster domain 145 198 2.8E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_05625 685e9dc5f406a1f3b8ea07f0715b7ed8 254 Gene3D G3DSA:3.30.70.20 52 133 4.5E-13 T 13-10-2018 HCD_05625 685e9dc5f406a1f3b8ea07f0715b7ed8 254 Gene3D G3DSA:3.30.70.20 142 219 4.3E-10 T 13-10-2018 HCD_05625 685e9dc5f406a1f3b8ea07f0715b7ed8 254 TIGRFAM TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein 9 217 7.4E-62 T 13-10-2018 IPR004494 MauM/NapG ferredoxin-type protein HCD_04030 a0c3ed9d3c53539237d78d2dff4f8689 86 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 8 78 4.0E-24 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04030 a0c3ed9d3c53539237d78d2dff4f8689 86 ProSitePatterns PS00056 Ribosomal protein S17 signature. 59 71 - T 13-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04030 a0c3ed9d3c53539237d78d2dff4f8689 86 PRINTS PR00973 Ribosomal protein S17 family signature 27 50 6.7E-10 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04030 a0c3ed9d3c53539237d78d2dff4f8689 86 PRINTS PR00973 Ribosomal protein S17 family signature 59 69 6.7E-10 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04030 a0c3ed9d3c53539237d78d2dff4f8689 86 PRINTS PR00973 Ribosomal protein S17 family signature 69 76 6.7E-10 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04030 a0c3ed9d3c53539237d78d2dff4f8689 86 SUPERFAMILY SSF50249 8 82 1.03E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_04030 a0c3ed9d3c53539237d78d2dff4f8689 86 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 8 83 20.242 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04030 a0c3ed9d3c53539237d78d2dff4f8689 86 Pfam PF00366 Ribosomal protein S17 13 78 2.9E-23 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04030 a0c3ed9d3c53539237d78d2dff4f8689 86 Gene3D G3DSA:2.40.50.140 5 84 1.6E-24 T 13-10-2018 HCD_04030 a0c3ed9d3c53539237d78d2dff4f8689 86 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 8 78 2.3E-27 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04530 43714713eec13e87f06f78d29ee566b2 398 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 2 392 9.4E-107 T 13-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 HCD_04530 43714713eec13e87f06f78d29ee566b2 398 SUPERFAMILY SSF53383 17 397 1.25E-32 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase HCD_04530 43714713eec13e87f06f78d29ee566b2 398 Pfam PF03841 L-seryl-tRNA selenium transferase 20 378 3.9E-95 T 13-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 HCD_04530 43714713eec13e87f06f78d29ee566b2 398 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 397 112.828 T 13-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 HCD_04530 43714713eec13e87f06f78d29ee566b2 398 Gene3D G3DSA:3.90.1150.180 18 381 7.4E-106 T 13-10-2018 HCD_04530 43714713eec13e87f06f78d29ee566b2 398 Gene3D G3DSA:3.40.640.10 32 291 7.4E-106 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 HCD_00730 d282f76003313de1f2e6702b98c8ddc7 272 SUPERFAMILY SSF53335 2 258 4.35E-41 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_00730 d282f76003313de1f2e6702b98c8ddc7 272 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 2 270 42.163 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 HCD_00730 d282f76003313de1f2e6702b98c8ddc7 272 Pfam PF00398 Ribosomal RNA adenine dimethylase 4 254 5.3E-36 T 13-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm HCD_00730 d282f76003313de1f2e6702b98c8ddc7 272 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 34 60 - T 13-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 HCD_00730 d282f76003313de1f2e6702b98c8ddc7 272 SMART SM00650 18 182 1.0E-52 T 13-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 HCD_00730 d282f76003313de1f2e6702b98c8ddc7 272 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 3 268 1.7E-72 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 HCD_00730 d282f76003313de1f2e6702b98c8ddc7 272 Gene3D G3DSA:3.40.50.150 1 183 1.5E-44 T 13-10-2018 HCD_02010 718d8d4b406b9cba715b42fee4f9b5b5 517 Pfam PF01856 Helicobacter outer membrane protein 357 517 3.9E-43 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02010 718d8d4b406b9cba715b42fee4f9b5b5 517 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 391 412 3.0E-31 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02010 718d8d4b406b9cba715b42fee4f9b5b5 517 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 344 365 3.0E-31 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02010 718d8d4b406b9cba715b42fee4f9b5b5 517 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 370 390 3.0E-31 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02010 718d8d4b406b9cba715b42fee4f9b5b5 517 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 477 498 3.0E-31 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07890 e01a3d3b1801532a9f3e9ac8ffa69bb1 229 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 229 67.788 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 HCD_07890 e01a3d3b1801532a9f3e9ac8ffa69bb1 229 Gene3D G3DSA:1.10.1270.20 169 229 3.0E-5 T 13-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 HCD_07890 e01a3d3b1801532a9f3e9ac8ffa69bb1 229 SUPERFAMILY SSF75217 2 227 1.64E-69 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases HCD_07890 e01a3d3b1801532a9f3e9ac8ffa69bb1 229 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 220 4.4E-58 T 13-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 HCD_07890 e01a3d3b1801532a9f3e9ac8ffa69bb1 229 PIRSF PIRSF000386 1 229 8.2E-82 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 HCD_07890 e01a3d3b1801532a9f3e9ac8ffa69bb1 229 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 228 1.5E-90 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 HCD_07890 e01a3d3b1801532a9f3e9ac8ffa69bb1 229 Gene3D G3DSA:3.40.1280.10 1 168 1.1E-58 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal HCD_03525 2bde374c2230f2b86337e827ec7518b5 451 SUPERFAMILY SSF51905 1 290 3.31E-21 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_03525 2bde374c2230f2b86337e827ec7518b5 451 Gene3D G3DSA:3.30.9.10 236 382 1.2E-5 T 13-10-2018 HCD_03525 2bde374c2230f2b86337e827ec7518b5 451 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 4 417 6.5E-24 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 HCD_03525 2bde374c2230f2b86337e827ec7518b5 451 Gene3D G3DSA:3.50.50.60 2 151 1.3E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_01250 784938d1582aeea5a5e5e31a35c79366 510 SUPERFAMILY SSF64518 1 509 7.98E-88 T 13-10-2018 HCD_01250 784938d1582aeea5a5e5e31a35c79366 510 Gene3D G3DSA:2.170.280.10 178 417 7.7E-90 T 13-10-2018 HCD_01250 784938d1582aeea5a5e5e31a35c79366 510 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 143 2.5E-39 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 HCD_01250 784938d1582aeea5a5e5e31a35c79366 510 Gene3D G3DSA:2.30.220.10 196 287 7.7E-90 T 13-10-2018 HCD_01250 784938d1582aeea5a5e5e31a35c79366 510 Gene3D G3DSA:1.20.1330.10 45 469 7.7E-90 T 13-10-2018 HCD_01250 784938d1582aeea5a5e5e31a35c79366 510 Gene3D G3DSA:1.20.58.1830 5 509 7.7E-90 T 13-10-2018 HCD_01250 784938d1582aeea5a5e5e31a35c79366 510 Pfam PF00700 Bacterial flagellin C-terminal helical region 424 509 5.6E-28 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 HCD_01250 784938d1582aeea5a5e5e31a35c79366 510 PRINTS PR00207 Flagellin signature 111 134 3.8E-15 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 HCD_01250 784938d1582aeea5a5e5e31a35c79366 510 PRINTS PR00207 Flagellin signature 76 95 3.8E-15 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 HCD_01250 784938d1582aeea5a5e5e31a35c79366 510 PRINTS PR00207 Flagellin signature 37 54 3.8E-15 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 HCD_01250 784938d1582aeea5a5e5e31a35c79366 510 Pfam PF07196 Flagellin hook IN motif 251 301 2.6E-12 T 13-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 HCD_01250 784938d1582aeea5a5e5e31a35c79366 510 Pfam PF07196 Flagellin hook IN motif 187 247 1.1E-8 T 13-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 HCD_00475 510e6b7dec6d8e55472136723a4161e5 806 SMART SM00028 715 748 180.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_00475 510e6b7dec6d8e55472136723a4161e5 806 SMART SM00028 602 635 210.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_00475 510e6b7dec6d8e55472136723a4161e5 806 SMART SM00028 311 344 260.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_00475 510e6b7dec6d8e55472136723a4161e5 806 SMART SM00028 348 381 130.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_00475 510e6b7dec6d8e55472136723a4161e5 806 SMART SM00028 274 307 14.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_00475 510e6b7dec6d8e55472136723a4161e5 806 Pfam PF09976 Tetratricopeptide repeat-like domain 278 374 6.0E-7 T 13-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 HCD_00475 510e6b7dec6d8e55472136723a4161e5 806 Gene3D G3DSA:1.25.40.10 318 454 1.2E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_00475 510e6b7dec6d8e55472136723a4161e5 806 Gene3D G3DSA:1.25.40.10 200 317 1.6E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_00475 510e6b7dec6d8e55472136723a4161e5 806 Gene3D G3DSA:1.25.40.10 468 681 8.7E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_00475 510e6b7dec6d8e55472136723a4161e5 806 SUPERFAMILY SSF48452 269 395 1.44E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_00475 510e6b7dec6d8e55472136723a4161e5 806 Gene3D G3DSA:1.25.40.10 682 798 7.8E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_00475 510e6b7dec6d8e55472136723a4161e5 806 SUPERFAMILY SSF48452 599 785 3.16E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_00360 dbb723c4c6cb1eeaf220ede8b26d2819 197 SMART SM00287 134 197 4.0E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type HCD_00360 dbb723c4c6cb1eeaf220ede8b26d2819 197 Pfam PF08239 Bacterial SH3 domain 142 194 4.7E-12 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type HCD_00360 dbb723c4c6cb1eeaf220ede8b26d2819 197 Gene3D G3DSA:2.30.30.40 137 197 2.9E-13 T 13-10-2018 HCD_07290 308844bbfe674685e24896ababf870b4 319 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 3 19 9.3E-14 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_07290 308844bbfe674685e24896ababf870b4 319 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 103 117 9.3E-14 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_07290 308844bbfe674685e24896ababf870b4 319 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 149 162 9.3E-14 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_07290 308844bbfe674685e24896ababf870b4 319 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 64 76 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 HCD_07290 308844bbfe674685e24896ababf870b4 319 Pfam PF00145 C-5 cytosine-specific DNA methylase 253 313 1.0E-5 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_07290 308844bbfe674685e24896ababf870b4 319 Pfam PF00145 C-5 cytosine-specific DNA methylase 3 220 7.6E-67 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_07290 308844bbfe674685e24896ababf870b4 319 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 4 312 1.8E-91 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_07290 308844bbfe674685e24896ababf870b4 319 SUPERFAMILY SSF53335 2 315 7.12E-75 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_07290 308844bbfe674685e24896ababf870b4 319 Gene3D G3DSA:3.40.50.150 3 306 5.4E-79 T 13-10-2018 HCD_07290 308844bbfe674685e24896ababf870b4 319 Gene3D G3DSA:3.90.120.10 177 272 5.4E-79 T 13-10-2018 HCD_03990 678c6e11ddacc13cfc5113659d1077aa 147 Gene3D G3DSA:3.30.230.10 72 147 8.3E-33 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup HCD_03990 678c6e11ddacc13cfc5113659d1077aa 147 Gene3D G3DSA:3.30.160.20 2 71 2.9E-31 T 13-10-2018 HCD_03990 678c6e11ddacc13cfc5113659d1077aa 147 SUPERFAMILY SSF54211 78 145 4.8E-24 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_03990 678c6e11ddacc13cfc5113659d1077aa 147 ProSitePatterns PS00585 Ribosomal protein S5 signature. 26 58 - T 13-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site HCD_03990 678c6e11ddacc13cfc5113659d1077aa 147 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 7 146 2.3E-67 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 HCD_03990 678c6e11ddacc13cfc5113659d1077aa 147 Pfam PF03719 Ribosomal protein S5, C-terminal domain 85 146 5.8E-28 T 13-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 HCD_03990 678c6e11ddacc13cfc5113659d1077aa 147 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 147 31.53 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 HCD_03990 678c6e11ddacc13cfc5113659d1077aa 147 SUPERFAMILY SSF54768 5 73 2.62E-24 T 13-10-2018 HCD_03990 678c6e11ddacc13cfc5113659d1077aa 147 Pfam PF00333 Ribosomal protein S5, N-terminal domain 9 72 2.4E-29 T 13-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 HCD_05515 50d19abf2c40b07054a297f9e211de23 459 Gene3D G3DSA:1.10.45.10 418 457 2.6E-10 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 HCD_05515 50d19abf2c40b07054a297f9e211de23 459 Gene3D G3DSA:3.30.70.2740 336 417 1.5E-16 T 13-10-2018 HCD_05515 50d19abf2c40b07054a297f9e211de23 459 Pfam PF01565 FAD binding domain 40 179 6.1E-40 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 HCD_05515 50d19abf2c40b07054a297f9e211de23 459 Pfam PF02913 FAD linked oxidases, C-terminal domain 217 456 2.3E-59 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 HCD_05515 50d19abf2c40b07054a297f9e211de23 459 SUPERFAMILY SSF56176 5 217 6.07E-67 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 HCD_05515 50d19abf2c40b07054a297f9e211de23 459 SUPERFAMILY SSF55103 220 458 1.26E-60 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 HCD_05515 50d19abf2c40b07054a297f9e211de23 459 TIGRFAM TIGR00387 glcD: glycolate oxidase, subunit GlcD 43 456 1.5E-186 T 13-10-2018 IPR004490 Glycolate oxidase subunit GlcD GO:0008891|GO:0009339 HCD_05515 50d19abf2c40b07054a297f9e211de23 459 Gene3D G3DSA:3.30.465.40 6 236 1.6E-69 T 13-10-2018 HCD_02525 ff5b9c85ed47e026e9584093d253cc01 344 SUPERFAMILY SSF51735 2 337 2.2E-74 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_02525 ff5b9c85ed47e026e9584093d253cc01 344 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 269 1.7E-42 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 HCD_02525 ff5b9c85ed47e026e9584093d253cc01 344 Gene3D G3DSA:3.90.25.10 202 337 1.1E-101 T 13-10-2018 HCD_02525 ff5b9c85ed47e026e9584093d253cc01 344 Gene3D G3DSA:3.40.50.720 4 281 1.1E-101 T 13-10-2018 HCD_02525 ff5b9c85ed47e026e9584093d253cc01 344 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 342 6.5E-142 T 13-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 HCD_02785 5717b236c47e7781bb1ec2b9fa3505f0 247 SUPERFAMILY SSF51069 22 239 1.01E-57 T 13-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily HCD_02785 5717b236c47e7781bb1ec2b9fa3505f0 247 Gene3D G3DSA:3.10.200.10 22 247 4.4E-89 T 13-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily HCD_02785 5717b236c47e7781bb1ec2b9fa3505f0 247 SMART SM01057 23 243 2.7E-66 T 13-10-2018 IPR001148 Alpha carbonic anhydrase domain HCD_02785 5717b236c47e7781bb1ec2b9fa3505f0 247 Pfam PF00194 Eukaryotic-type carbonic anhydrase 22 235 1.5E-35 T 13-10-2018 IPR001148 Alpha carbonic anhydrase domain HCD_06215 2bbe37f9b088beb22e8658f065288889 449 SUPERFAMILY SSF69075 330 429 1.44E-15 T 13-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 HCD_06215 2bbe37f9b088beb22e8658f065288889 449 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 10 429 2.9E-146 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 HCD_06215 2bbe37f9b088beb22e8658f065288889 449 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 14 167 1.2E-35 T 13-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 HCD_06215 2bbe37f9b088beb22e8658f065288889 449 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 185 315 3.5E-31 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase HCD_06215 2bbe37f9b088beb22e8658f065288889 449 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 330 428 2.4E-18 T 13-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 HCD_06215 2bbe37f9b088beb22e8658f065288889 449 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 9 429 23.494 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 HCD_06215 2bbe37f9b088beb22e8658f065288889 449 Gene3D G3DSA:3.30.460.30 8 170 2.0E-43 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 HCD_06215 2bbe37f9b088beb22e8658f065288889 449 SUPERFAMILY SSF69742 10 170 2.22E-36 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 HCD_06215 2bbe37f9b088beb22e8658f065288889 449 PIRSF PIRSF000445 8 442 1.2E-116 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 HCD_06215 2bbe37f9b088beb22e8658f065288889 449 Gene3D G3DSA:3.40.50.720 174 317 5.0E-30 T 13-10-2018 HCD_06215 2bbe37f9b088beb22e8658f065288889 449 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 111 134 - T 13-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 HCD_06215 2bbe37f9b088beb22e8658f065288889 449 SUPERFAMILY SSF51735 176 325 2.66E-17 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_04050 ee20cf4d5c477d83989d219f8b1edbb0 122 SUPERFAMILY SSF54843 3 107 8.76E-32 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 HCD_04050 ee20cf4d5c477d83989d219f8b1edbb0 122 Pfam PF00237 Ribosomal protein L22p/L17e 6 102 4.1E-26 T 13-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 HCD_04050 ee20cf4d5c477d83989d219f8b1edbb0 122 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 105 23.26 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_04050 ee20cf4d5c477d83989d219f8b1edbb0 122 Gene3D G3DSA:3.90.470.10 2 122 2.4E-32 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 HCD_04050 ee20cf4d5c477d83989d219f8b1edbb0 122 ProSitePatterns PS00464 Ribosomal protein L22 signature. 78 102 - T 13-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04050 ee20cf4d5c477d83989d219f8b1edbb0 122 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 4 102 8.3E-40 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_08010 42edab6ebc31c303e6dc7cc804a7b1be 407 Gene3D G3DSA:3.40.50.970 7 258 2.2E-88 T 13-10-2018 HCD_08010 42edab6ebc31c303e6dc7cc804a7b1be 407 SUPERFAMILY SSF52922 258 403 5.5E-32 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 HCD_08010 42edab6ebc31c303e6dc7cc804a7b1be 407 Gene3D G3DSA:3.40.50.920 259 400 1.5E-32 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 HCD_08010 42edab6ebc31c303e6dc7cc804a7b1be 407 SUPERFAMILY SSF52518 10 257 1.26E-64 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold HCD_08010 42edab6ebc31c303e6dc7cc804a7b1be 407 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 268 372 6.1E-23 T 13-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II HCD_08010 42edab6ebc31c303e6dc7cc804a7b1be 407 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 23 246 1.1E-76 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 HCD_03365 c422e461da821de229ebb0e09dba9d3a 276 Pfam PF01856 Helicobacter outer membrane protein 104 276 1.6E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03365 c422e461da821de229ebb0e09dba9d3a 276 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 228 249 2.2E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03365 c422e461da821de229ebb0e09dba9d3a 276 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 150 171 2.2E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03365 c422e461da821de229ebb0e09dba9d3a 276 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 119 139 2.2E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03365 c422e461da821de229ebb0e09dba9d3a 276 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 93 114 2.2E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00310 8ecd820e211580ed356e806716ad35f5 245 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 60 68 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 HCD_00310 8ecd820e211580ed356e806716ad35f5 245 Pfam PF13183 4Fe-4S dicluster domain 150 224 2.2E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_00310 8ecd820e211580ed356e806716ad35f5 245 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 9 112 9.9E-30 T 13-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 HCD_00310 8ecd820e211580ed356e806716ad35f5 245 SUPERFAMILY SSF54292 6 108 4.19E-27 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 HCD_00310 8ecd820e211580ed356e806716ad35f5 245 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 154 165 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_00310 8ecd820e211580ed356e806716ad35f5 245 SUPERFAMILY SSF46548 112 240 2.09E-25 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 HCD_00310 8ecd820e211580ed356e806716ad35f5 245 Gene3D G3DSA:3.10.20.30 4 109 7.1E-32 T 13-10-2018 IPR012675 Beta-grasp domain superfamily HCD_00310 8ecd820e211580ed356e806716ad35f5 245 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 12 235 5.8E-54 T 13-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 HCD_00310 8ecd820e211580ed356e806716ad35f5 245 Gene3D G3DSA:1.10.1060.10 110 244 9.3E-47 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 SUPERFAMILY SSF55186 545 696 6.28E-43 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 SUPERFAMILY SSF50447 445 535 2.33E-10 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 Gene3D G3DSA:2.40.30.130 457 543 1.3E-6 T 13-10-2018 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 643 686 8.0E-15 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 Pfam PF01411 tRNA synthetases class II (A) 3 546 5.0E-210 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 SMART SM00863 643 686 1.4E-16 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 845 148.113 T 13-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 SUPERFAMILY SSF55681 3 239 8.95E-97 T 13-10-2018 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 SUPERFAMILY SSF101353 240 444 1.01E-53 T 13-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 3 824 0.0 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 Pfam PF02272 DHHA1 domain 711 839 4.6E-18 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 Gene3D G3DSA:3.30.930.10 1 236 1.7E-100 T 13-10-2018 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 Gene3D G3DSA:3.30.54.20 614 667 3.7E-47 T 13-10-2018 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 Gene3D G3DSA:3.30.980.10 547 685 3.7E-47 T 13-10-2018 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 Gene3D G3DSA:3.10.310.40 740 841 1.8E-20 T 13-10-2018 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 PRINTS PR00980 Alanyl-tRNA synthetase signature 292 305 9.8E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 PRINTS PR00980 Alanyl-tRNA synthetase signature 268 284 9.8E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 PRINTS PR00980 Alanyl-tRNA synthetase signature 220 233 9.8E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 PRINTS PR00980 Alanyl-tRNA synthetase signature 71 82 9.8E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 HCD_03300 997be4261cbbab1e0da3e3efab9a57f5 847 PRINTS PR00980 Alanyl-tRNA synthetase signature 193 204 9.8E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 HCD_03030 aa37938ff15368288863c1b85961f856 424 SUPERFAMILY SSF56317 220 416 2.35E-18 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily HCD_03030 aa37938ff15368288863c1b85961f856 424 Pfam PF00795 Carbon-nitrogen hydrolase 221 406 4.4E-9 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 HCD_03030 aa37938ff15368288863c1b85961f856 424 Gene3D G3DSA:3.60.110.10 212 408 3.6E-7 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily HCD_03030 aa37938ff15368288863c1b85961f856 424 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 62 413 3.5E-68 T 13-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 HCD_00680 145806a6a3f87dab2a6282d72db6d992 283 Pfam PF02963 Restriction endonuclease EcoRI 17 273 1.0E-135 T 13-10-2018 IPR004221 Restriction endonuclease, type II, EcoRI GO:0000287|GO:0003677|GO:0009036|GO:0009307 HCD_00680 145806a6a3f87dab2a6282d72db6d992 283 ProDom PD039825 ENDONUCLEASE RESTRICTION ENZYME TYPE PLASMID MAGNESIUM RSRI DIRECT SYSTEM HYDROLASE 26 266 1.0E-97 T 13-10-2018 IPR004221 Restriction endonuclease, type II, EcoRI GO:0000287|GO:0003677|GO:0009036|GO:0009307 HCD_00680 145806a6a3f87dab2a6282d72db6d992 283 Gene3D G3DSA:3.40.580.10 2 277 7.0E-138 T 13-10-2018 IPR011336 Restriction endonuclease, type II, EcoRI/MunI GO:0003677|GO:0009036|GO:0009307 HCD_00680 145806a6a3f87dab2a6282d72db6d992 283 SUPERFAMILY SSF52980 17 275 1.07E-112 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 HCD_08575 f5cbe46e19ba82a6a53ec83b205b2f49 355 Pfam PF00145 C-5 cytosine-specific DNA methylase 3 350 5.0E-78 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08575 f5cbe46e19ba82a6a53ec83b205b2f49 355 Gene3D G3DSA:3.40.50.150 6 342 2.3E-97 T 13-10-2018 HCD_08575 f5cbe46e19ba82a6a53ec83b205b2f49 355 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 6 349 6.3E-71 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08575 f5cbe46e19ba82a6a53ec83b205b2f49 355 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 159 172 3.2E-19 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08575 f5cbe46e19ba82a6a53ec83b205b2f49 355 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 113 127 3.2E-19 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08575 f5cbe46e19ba82a6a53ec83b205b2f49 355 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 4 20 3.2E-19 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08575 f5cbe46e19ba82a6a53ec83b205b2f49 355 SUPERFAMILY SSF53335 1 350 8.3E-93 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_08575 f5cbe46e19ba82a6a53ec83b205b2f49 355 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 331 349 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 HCD_08575 f5cbe46e19ba82a6a53ec83b205b2f49 355 Gene3D G3DSA:3.90.120.10 155 338 2.3E-97 T 13-10-2018 HCD_08575 f5cbe46e19ba82a6a53ec83b205b2f49 355 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 74 86 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 HCD_05510 0d0a1ff906a049fe020614ce0ebc79e5 418 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 122 417 2.3E-60 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_05510 0d0a1ff906a049fe020614ce0ebc79e5 418 Pfam PF00145 C-5 cytosine-specific DNA methylase 118 417 1.1E-55 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_05510 0d0a1ff906a049fe020614ce0ebc79e5 418 SUPERFAMILY SSF53335 134 417 1.16E-53 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_05510 0d0a1ff906a049fe020614ce0ebc79e5 418 Gene3D G3DSA:3.40.50.150 132 280 1.0E-57 T 13-10-2018 HCD_05510 0d0a1ff906a049fe020614ce0ebc79e5 418 Gene3D G3DSA:3.90.120.10 281 338 1.0E-57 T 13-10-2018 HCD_05510 0d0a1ff906a049fe020614ce0ebc79e5 418 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 167 179 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 HCD_05510 0d0a1ff906a049fe020614ce0ebc79e5 418 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 252 265 3.4E-15 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_05510 0d0a1ff906a049fe020614ce0ebc79e5 418 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 206 220 3.4E-15 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_05510 0d0a1ff906a049fe020614ce0ebc79e5 418 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 3 19 3.4E-15 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_02620 81cb0b9dab6b78b5f5d5132d6acc1900 798 Gene3D G3DSA:3.40.228.10 172 617 9.9E-176 T 13-10-2018 HCD_02620 81cb0b9dab6b78b5f5d5132d6acc1900 798 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 39 795 0.0 T 13-10-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 HCD_02620 81cb0b9dab6b78b5f5d5132d6acc1900 798 Pfam PF01568 Molydopterin dinucleotide binding domain 651 771 1.1E-26 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 HCD_02620 81cb0b9dab6b78b5f5d5132d6acc1900 798 Pfam PF00384 Molybdopterin oxidoreductase 82 534 9.5E-70 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_02620 81cb0b9dab6b78b5f5d5132d6acc1900 798 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 690 717 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 HCD_02620 81cb0b9dab6b78b5f5d5132d6acc1900 798 SUPERFAMILY SSF50692 645 780 6.78E-38 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily HCD_02620 81cb0b9dab6b78b5f5d5132d6acc1900 798 Gene3D G3DSA:2.40.40.20 625 784 2.9E-50 T 13-10-2018 HCD_02620 81cb0b9dab6b78b5f5d5132d6acc1900 798 SUPERFAMILY SSF53706 38 653 6.15E-157 T 13-10-2018 HCD_02620 81cb0b9dab6b78b5f5d5132d6acc1900 798 Gene3D G3DSA:3.40.50.740 82 547 9.9E-176 T 13-10-2018 HCD_02620 81cb0b9dab6b78b5f5d5132d6acc1900 798 Gene3D G3DSA:3.90.55.10 77 591 9.9E-176 T 13-10-2018 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 Gene3D G3DSA:1.25.40.10 446 556 1.7E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 SUPERFAMILY SSF48452 460 797 1.33E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 SMART SM00028 490 523 0.0083 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 SMART SM00028 704 737 330.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 SMART SM00028 163 196 27.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 SMART SM00028 296 329 14.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 SMART SM00028 773 804 490.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 SMART SM00028 456 489 270.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 SUPERFAMILY SSF48452 127 198 6.83E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 Pfam PF13174 Tetratricopeptide repeat 302 328 0.2 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 SUPERFAMILY SSF48452 280 520 3.64E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 Pfam PF13181 Tetratricopeptide repeat 492 520 0.15 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 Gene3D G3DSA:1.25.40.10 278 406 6.2E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 Gene3D G3DSA:1.25.40.10 649 826 6.8E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_04335 b1ae99b6a6d8bb084aa38889a2a99966 832 Gene3D G3DSA:1.25.40.10 118 244 2.1E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_07390 35e9b2c2db30c66fa5e4a62ecc6d170e 303 SUPERFAMILY SSF53328 1 204 3.01E-48 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 HCD_07390 35e9b2c2db30c66fa5e4a62ecc6d170e 303 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 297 2.8E-72 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 HCD_07390 35e9b2c2db30c66fa5e4a62ecc6d170e 303 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 297 27.778 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 HCD_07390 35e9b2c2db30c66fa5e4a62ecc6d170e 303 SUPERFAMILY SSF50486 202 302 8.04E-16 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 HCD_07390 35e9b2c2db30c66fa5e4a62ecc6d170e 303 Gene3D G3DSA:3.10.25.10 204 302 7.1E-14 T 13-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 HCD_07390 35e9b2c2db30c66fa5e4a62ecc6d170e 303 Gene3D G3DSA:3.40.50.170 1 203 4.0E-60 T 13-10-2018 HCD_07390 35e9b2c2db30c66fa5e4a62ecc6d170e 303 Pfam PF02911 Formyl transferase, C-terminal domain 201 294 2.6E-15 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 HCD_07390 35e9b2c2db30c66fa5e4a62ecc6d170e 303 Pfam PF00551 Formyl transferase 1 170 3.4E-29 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 HCD_07860 2dfd255badecc01b7e553f62b8ed67e6 135 Pfam PF02623 FliW protein 5 116 7.7E-25 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 HCD_07860 2dfd255badecc01b7e553f62b8ed67e6 135 Hamap MF_01185 Flagellar assembly factor FliW [fliW]. 1 127 16.772 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 HCD_07860 2dfd255badecc01b7e553f62b8ed67e6 135 Gene3D G3DSA:2.30.290.10 2 129 6.9E-18 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily HCD_07860 2dfd255badecc01b7e553f62b8ed67e6 135 SUPERFAMILY SSF141457 3 116 3.27E-27 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily HCD_04830 3cf879e490e4006e013c91112ef59537 347 SUPERFAMILY SSF53067 154 335 3.06E-46 T 13-10-2018 HCD_04830 3cf879e490e4006e013c91112ef59537 347 Gene3D G3DSA:3.30.420.40 14 332 3.0E-122 T 13-10-2018 HCD_04830 3cf879e490e4006e013c91112ef59537 347 Gene3D G3DSA:3.30.420.40 159 322 3.0E-122 T 13-10-2018 HCD_04830 3cf879e490e4006e013c91112ef59537 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 54 72 2.2E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 HCD_04830 3cf879e490e4006e013c91112ef59537 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 74 97 2.2E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 HCD_04830 3cf879e490e4006e013c91112ef59537 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 192 212 2.2E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 HCD_04830 3cf879e490e4006e013c91112ef59537 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 305 331 2.2E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 HCD_04830 3cf879e490e4006e013c91112ef59537 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 137 156 2.2E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 HCD_04830 3cf879e490e4006e013c91112ef59537 347 Pfam PF06723 MreB/Mbl protein 12 340 3.9E-142 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 HCD_04830 3cf879e490e4006e013c91112ef59537 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 10 341 5.7E-161 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 HCD_04830 3cf879e490e4006e013c91112ef59537 347 SUPERFAMILY SSF53067 10 153 4.94E-38 T 13-10-2018 HCD_04830 3cf879e490e4006e013c91112ef59537 347 Gene3D G3DSA:3.90.640.10 191 264 3.0E-122 T 13-10-2018 HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 2 317 4.7E-102 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 3 16 2.5E-30 T 13-10-2018 IPR017861 Kae1/TsaD family HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 2.5E-30 T 13-10-2018 IPR017861 Kae1/TsaD family HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 267 276 2.5E-30 T 13-10-2018 IPR017861 Kae1/TsaD family HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 2.5E-30 T 13-10-2018 IPR017861 Kae1/TsaD family HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 2.5E-30 T 13-10-2018 IPR017861 Kae1/TsaD family HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 2.5E-30 T 13-10-2018 IPR017861 Kae1/TsaD family HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 SUPERFAMILY SSF53067 101 313 6.47E-23 T 13-10-2018 HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 Gene3D G3DSA:3.30.420.40 2 319 5.7E-92 T 13-10-2018 HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 336 50.915 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 SUPERFAMILY SSF53067 1 121 3.56E-18 T 13-10-2018 HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 13-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 3 310 8.7E-112 T 13-10-2018 IPR017861 Kae1/TsaD family HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 Gene3D G3DSA:3.30.420.40 129 297 5.7E-92 T 13-10-2018 HCD_08590 6cd958cdba705eeee7b891381bf9cfeb 343 Pfam PF00814 Glycoprotease family 24 310 5.8E-74 T 13-10-2018 IPR000905 Gcp-like domain HCD_08130 3125d156110bacdc276dd89d74fe8c88 264 Pfam PF01856 Helicobacter outer membrane protein 123 262 1.9E-8 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03125 bb5357da3bddb790c8e29bc57a84f8d0 370 Pfam PF01501 Glycosyl transferase family 8 6 289 3.8E-34 T 13-10-2018 IPR002495 Glycosyl transferase, family 8 GO:0016757 HCD_03125 bb5357da3bddb790c8e29bc57a84f8d0 370 Gene3D G3DSA:3.90.550.10 6 308 7.5E-42 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_03125 bb5357da3bddb790c8e29bc57a84f8d0 370 SUPERFAMILY SSF53448 5 309 4.78E-46 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_01520 53d3e1f200642ca606e83bcd0dd1fd90 330 Gene3D G3DSA:3.40.50.150 3 255 3.0E-12 T 13-10-2018 HCD_01520 53d3e1f200642ca606e83bcd0dd1fd90 330 SUPERFAMILY SSF53335 3 250 1.51E-13 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_01520 53d3e1f200642ca606e83bcd0dd1fd90 330 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 84 90 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_01520 53d3e1f200642ca606e83bcd0dd1fd90 330 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 31 45 7.2E-5 T 13-10-2018 HCD_01520 53d3e1f200642ca606e83bcd0dd1fd90 330 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 81 93 7.2E-5 T 13-10-2018 HCD_01520 53d3e1f200642ca606e83bcd0dd1fd90 330 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 4 20 7.2E-5 T 13-10-2018 HCD_06655 49bc948395f3d6b85ec7940c81f69fd9 167 Gene3D G3DSA:3.90.220.20 1 164 2.8E-17 T 13-10-2018 HCD_06655 49bc948395f3d6b85ec7940c81f69fd9 167 SUPERFAMILY SSF116734 2 160 1.8E-18 T 13-10-2018 HCD_07265 7baff1d230e81e49bfd3801a6853e8f5 258 Pfam PF08238 Sel1 repeat 136 168 6.0E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_07265 7baff1d230e81e49bfd3801a6853e8f5 258 Pfam PF08238 Sel1 repeat 210 241 7.4E-5 T 13-10-2018 IPR006597 Sel1-like repeat HCD_07265 7baff1d230e81e49bfd3801a6853e8f5 258 Pfam PF08238 Sel1 repeat 63 95 2.5E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_07265 7baff1d230e81e49bfd3801a6853e8f5 258 Pfam PF08238 Sel1 repeat 170 207 1.7E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_07265 7baff1d230e81e49bfd3801a6853e8f5 258 Pfam PF08238 Sel1 repeat 100 133 4.6E-8 T 13-10-2018 IPR006597 Sel1-like repeat HCD_07265 7baff1d230e81e49bfd3801a6853e8f5 258 SMART SM00671 170 208 7.9E-8 T 13-10-2018 IPR006597 Sel1-like repeat HCD_07265 7baff1d230e81e49bfd3801a6853e8f5 258 SMART SM00671 98 133 1.6E-11 T 13-10-2018 IPR006597 Sel1-like repeat HCD_07265 7baff1d230e81e49bfd3801a6853e8f5 258 SMART SM00671 209 244 1.1E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_07265 7baff1d230e81e49bfd3801a6853e8f5 258 SMART SM00671 134 169 2.5E-7 T 13-10-2018 IPR006597 Sel1-like repeat HCD_07265 7baff1d230e81e49bfd3801a6853e8f5 258 SMART SM00671 62 97 7.8E-9 T 13-10-2018 IPR006597 Sel1-like repeat HCD_07265 7baff1d230e81e49bfd3801a6853e8f5 258 Gene3D G3DSA:1.25.40.10 29 258 3.5E-66 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_07265 7baff1d230e81e49bfd3801a6853e8f5 258 SUPERFAMILY SSF81901 33 246 7.19E-53 T 13-10-2018 HCD_05460 5004e1e990079eedf0071b61a70a7bc0 180 Gene3D G3DSA:3.60.20.10 1 180 2.3E-51 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal HCD_05460 5004e1e990079eedf0071b61a70a7bc0 180 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 17 179 6.0E-70 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 HCD_05460 5004e1e990079eedf0071b61a70a7bc0 180 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 4 180 38.194 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 HCD_05460 5004e1e990079eedf0071b61a70a7bc0 180 Pfam PF00227 Proteasome subunit 2 177 1.8E-17 T 13-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 HCD_05460 5004e1e990079eedf0071b61a70a7bc0 180 SUPERFAMILY SSF56235 2 179 3.66E-46 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal HCD_06095 ee715dbb1282ba1cd16e2e9877864279 392 Pfam PF12002 MgsA AAA+ ATPase C terminal 238 390 3.9E-53 T 13-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal HCD_06095 ee715dbb1282ba1cd16e2e9877864279 392 Gene3D G3DSA:1.20.272.10 219 317 2.0E-42 T 13-10-2018 HCD_06095 ee715dbb1282ba1cd16e2e9877864279 392 SUPERFAMILY SSF48019 223 391 1.02E-60 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 HCD_06095 ee715dbb1282ba1cd16e2e9877864279 392 SMART SM00382 36 148 1.1E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_06095 ee715dbb1282ba1cd16e2e9877864279 392 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 5 119 7.3E-17 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 HCD_06095 ee715dbb1282ba1cd16e2e9877864279 392 Gene3D G3DSA:3.40.50.300 1 147 2.4E-31 T 13-10-2018 HCD_06095 ee715dbb1282ba1cd16e2e9877864279 392 SUPERFAMILY SSF52540 3 197 8.58E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_06095 ee715dbb1282ba1cd16e2e9877864279 392 Gene3D G3DSA:1.10.3710.10 319 380 6.2E-9 T 13-10-2018 HCD_06095 ee715dbb1282ba1cd16e2e9877864279 392 Pfam PF16193 AAA C-terminal domain 168 237 4.9E-13 T 13-10-2018 IPR032423 AAA C-terminal domain HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 PIRSF PIRSF036687 2 853 0.0 T 13-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 SUPERFAMILY SSF53732 370 850 4.45E-139 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 ProSitePatterns PS00450 Aconitase family signature 1. 701 718 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 Gene3D G3DSA:3.20.19.10 166 353 2.8E-67 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 Gene3D G3DSA:3.40.1060.10 377 673 9.3E-142 T 13-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 SUPERFAMILY SSF74778 4 163 5.75E-55 T 13-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 4 852 0.0 T 13-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 Pfam PF06434 Aconitate hydratase 2 N-terminus 173 374 4.7E-97 T 13-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 Gene3D G3DSA:3.30.499.10 394 521 9.3E-142 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 Pfam PF00330 Aconitase family (aconitate hydratase) 460 816 2.7E-42 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 ProSitePatterns PS01244 Aconitase family signature 2. 759 772 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 Gene3D G3DSA:1.25.40.310 4 165 1.5E-53 T 13-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 Gene3D G3DSA:3.30.499.10 675 853 6.6E-57 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 SUPERFAMILY SSF52016 167 364 6.67E-64 T 13-10-2018 HCD_06955 1cdd56e3fc3aa3cdf0322449bf1d1e3b 853 Pfam PF11791 Aconitate B N-terminal domain 7 160 2.4E-56 T 13-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 HCD_08555 79719f819c1d6f939e52404b93be74ce 332 Pfam PF02769 AIR synthase related protein, C-terminal domain 159 309 1.5E-21 T 13-10-2018 IPR010918 PurM-like, C-terminal domain HCD_08555 79719f819c1d6f939e52404b93be74ce 332 Pfam PF00586 AIR synthase related protein, N-terminal domain 48 146 1.2E-9 T 13-10-2018 IPR016188 PurM-like, N-terminal domain HCD_08555 79719f819c1d6f939e52404b93be74ce 332 Gene3D G3DSA:3.90.650.10 150 332 2.1E-48 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily HCD_08555 79719f819c1d6f939e52404b93be74ce 332 SUPERFAMILY SSF55326 3 149 5.06E-22 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily HCD_08555 79719f819c1d6f939e52404b93be74ce 332 SUPERFAMILY SSF56042 152 326 1.03E-35 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily HCD_08555 79719f819c1d6f939e52404b93be74ce 332 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 3 332 9.2E-133 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE HCD_08555 79719f819c1d6f939e52404b93be74ce 332 PIRSF PIRSF005644 1 332 5.6E-115 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE HCD_08555 79719f819c1d6f939e52404b93be74ce 332 Gene3D G3DSA:3.30.1330.10 1 149 1.6E-38 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily HCD_01600 636e3ccd1c0331923cd6556d66d044c2 481 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 7 448 7.2E-186 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 HCD_01600 636e3ccd1c0331923cd6556d66d044c2 481 SMART SM00116 156 204 1.1E-6 T 13-10-2018 IPR000644 CBS domain HCD_01600 636e3ccd1c0331923cd6556d66d044c2 481 SMART SM00116 95 143 3.0E-5 T 13-10-2018 IPR000644 CBS domain HCD_01600 636e3ccd1c0331923cd6556d66d044c2 481 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 7 468 9.5E-159 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 HCD_01600 636e3ccd1c0331923cd6556d66d044c2 481 SMART SM01240 6 468 0.0 T 13-10-2018 HCD_01600 636e3ccd1c0331923cd6556d66d044c2 481 Pfam PF00571 CBS domain 148 203 2.4E-8 T 13-10-2018 IPR000644 CBS domain HCD_01600 636e3ccd1c0331923cd6556d66d044c2 481 Pfam PF00571 CBS domain 95 139 3.8E-6 T 13-10-2018 IPR000644 CBS domain HCD_01600 636e3ccd1c0331923cd6556d66d044c2 481 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 7 481 85.456 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 HCD_01600 636e3ccd1c0331923cd6556d66d044c2 481 SUPERFAMILY SSF51412 2 472 5.23E-120 T 13-10-2018 HCD_01600 636e3ccd1c0331923cd6556d66d044c2 481 PIRSF PIRSF000130 1 481 1.0E-202 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 HCD_01600 636e3ccd1c0331923cd6556d66d044c2 481 Gene3D G3DSA:3.20.20.70 1 481 1.5E-210 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_01600 636e3ccd1c0331923cd6556d66d044c2 481 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 290 302 - T 13-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 HCD_01600 636e3ccd1c0331923cd6556d66d044c2 481 SUPERFAMILY SSF54631 93 203 1.64E-29 T 13-10-2018 HCD_08150 d67b3b22182a6edbd2f67c478968d4b3 295 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 3 270 7.9E-102 T 13-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 HCD_08150 d67b3b22182a6edbd2f67c478968d4b3 295 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 1 274 44.135 T 13-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 HCD_08150 d67b3b22182a6edbd2f67c478968d4b3 295 SUPERFAMILY SSF54211 1 122 1.44E-38 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_08150 d67b3b22182a6edbd2f67c478968d4b3 295 Gene3D G3DSA:3.30.1700.10 125 294 1.3E-59 T 13-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 HCD_08150 d67b3b22182a6edbd2f67c478968d4b3 295 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1 295 3.5E-142 T 13-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 HCD_08150 d67b3b22182a6edbd2f67c478968d4b3 295 Gene3D G3DSA:3.30.230.20 1 124 9.2E-42 T 13-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 HCD_08150 d67b3b22182a6edbd2f67c478968d4b3 295 SUPERFAMILY SSF54211 131 272 5.61E-47 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_02105 883e3279b5baf7e4f5b6b0a23746a6d1 194 SUPERFAMILY SSF116734 2 189 1.8E-24 T 13-10-2018 HCD_02105 883e3279b5baf7e4f5b6b0a23746a6d1 194 Gene3D G3DSA:3.90.220.20 1 190 1.2E-21 T 13-10-2018 HCD_02105 883e3279b5baf7e4f5b6b0a23746a6d1 194 Pfam PF01420 Type I restriction modification DNA specificity domain 2 169 6.2E-12 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 HCD_01610 96591631f75b0bb92a2759d0846a8ddd 196 Gene3D G3DSA:3.40.50.300 3 196 7.3E-58 T 13-10-2018 HCD_01610 96591631f75b0bb92a2759d0846a8ddd 196 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 7 189 1.4E-57 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 HCD_01610 96591631f75b0bb92a2759d0846a8ddd 196 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 4 194 24.078 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 HCD_01610 96591631f75b0bb92a2759d0846a8ddd 196 SUPERFAMILY SSF52540 5 192 1.23E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01610 96591631f75b0bb92a2759d0846a8ddd 196 Pfam PF01121 Dephospho-CoA kinase 7 183 1.2E-43 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 HCD_05240 d38abe71bed1baeb892408815c56a723 355 Hamap MF_02054 Tyrosine recombinase XerH [xerH]. 1 352 45.309 T 13-10-2018 IPR033683 Tyrosine recombinase XerH HCD_05240 d38abe71bed1baeb892408815c56a723 355 Pfam PF00589 Phage integrase family 168 342 3.8E-34 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 HCD_05240 d38abe71bed1baeb892408815c56a723 355 SUPERFAMILY SSF56349 168 349 9.12E-42 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 HCD_05240 d38abe71bed1baeb892408815c56a723 355 Gene3D G3DSA:1.10.443.10 166 349 4.5E-43 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 HCD_04810 975d79dc8d902be2ba3ab6d05cd27b93 127 SUPERFAMILY SSF141457 1 117 1.96E-27 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily HCD_04810 975d79dc8d902be2ba3ab6d05cd27b93 127 Gene3D G3DSA:2.30.290.10 1 122 5.9E-21 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily HCD_04810 975d79dc8d902be2ba3ab6d05cd27b93 127 Pfam PF02623 FliW protein 1 109 5.6E-25 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 HCD_01470 73fa77787510db85859f47eb3c17ad20 309 Gene3D G3DSA:3.90.226.10 1 309 1.5E-97 T 13-10-2018 HCD_01470 73fa77787510db85859f47eb3c17ad20 309 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 4 307 43.442 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_01470 73fa77787510db85859f47eb3c17ad20 309 SUPERFAMILY SSF52096 32 307 5.74E-83 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily HCD_01470 73fa77787510db85859f47eb3c17ad20 309 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 308 4.2E-154 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_01470 73fa77787510db85859f47eb3c17ad20 309 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 4 141 9.6E-46 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_01470 73fa77787510db85859f47eb3c17ad20 309 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 190 199 2.3E-42 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_01470 73fa77787510db85859f47eb3c17ad20 309 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 127 143 2.3E-42 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_01470 73fa77787510db85859f47eb3c17ad20 309 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 162 175 2.3E-42 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_01470 73fa77787510db85859f47eb3c17ad20 309 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 81 92 2.3E-42 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_01470 73fa77787510db85859f47eb3c17ad20 309 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 146 159 2.3E-42 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_01470 73fa77787510db85859f47eb3c17ad20 309 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 106 124 2.3E-42 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 HCD_04930 1c127e6f6e5b7a1026347088f0ee0962 232 Pfam PF01856 Helicobacter outer membrane protein 90 232 3.9E-17 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07150 82a9c4506e610698805acf911d2f81ff 430 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 HCD_07150 82a9c4506e610698805acf911d2f81ff 430 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 5 426 94.806 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 HCD_07150 82a9c4506e610698805acf911d2f81ff 430 Gene3D G3DSA:3.90.1150.10 10 416 2.6E-153 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 HCD_07150 82a9c4506e610698805acf911d2f81ff 430 SUPERFAMILY SSF53383 4 425 3.93E-116 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase HCD_07150 82a9c4506e610698805acf911d2f81ff 430 Pfam PF00202 Aminotransferase class-III 36 393 2.8E-71 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 HCD_07150 82a9c4506e610698805acf911d2f81ff 430 Gene3D G3DSA:3.40.640.10 71 317 2.6E-153 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 HCD_07150 82a9c4506e610698805acf911d2f81ff 430 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 425 4.8E-189 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 HCD_03485 71766d78d6b3aadc6c8c0f1c164529a3 484 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 99 113 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 HCD_03485 71766d78d6b3aadc6c8c0f1c164529a3 484 Gene3D G3DSA:3.40.50.1100 105 435 1.3E-109 T 13-10-2018 HCD_03485 71766d78d6b3aadc6c8c0f1c164529a3 484 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 91 406 2.3E-15 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme HCD_03485 71766d78d6b3aadc6c8c0f1c164529a3 484 SUPERFAMILY SSF53686 1 476 9.49E-123 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme HCD_03485 71766d78d6b3aadc6c8c0f1c164529a3 484 Gene3D G3DSA:3.90.1380.10 1 85 2.2E-7 T 13-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily HCD_03485 71766d78d6b3aadc6c8c0f1c164529a3 484 TIGRFAM TIGR00260 thrC: threonine synthase 61 434 2.0E-105 T 13-10-2018 IPR004450 Threonine synthase-like HCD_03485 71766d78d6b3aadc6c8c0f1c164529a3 484 Gene3D G3DSA:3.40.50.1100 94 433 1.3E-109 T 13-10-2018 HCD_06100 dae321e3262ec50d08a89acb480c00d4 150 SUPERFAMILY SSF46785 14 143 5.58E-34 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily HCD_06100 dae321e3262ec50d08a89acb480c00d4 150 Gene3D G3DSA:3.30.1490.190 94 150 4.5E-24 T 13-10-2018 HCD_06100 dae321e3262ec50d08a89acb480c00d4 150 Gene3D G3DSA:1.10.10.10 1 93 2.2E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_06100 dae321e3262ec50d08a89acb480c00d4 150 Pfam PF01475 Ferric uptake regulator family 20 138 1.1E-39 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 HCD_03000 1f74dac25e2d3554874d9bfce6e50ff7 806 SUPERFAMILY SSF55486 367 595 1.49E-5 T 13-10-2018 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 Gene3D G3DSA:3.40.50.720 2 323 3.9E-116 T 13-10-2018 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 PIRSF PIRSF000149 1 331 2.3E-113 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 1 96 6.7E-23 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 2 322 2.4E-116 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 SUPERFAMILY SSF51735 1 165 1.17E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 SMART SM00846 1 149 2.8E-53 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 SUPERFAMILY SSF55347 149 311 2.17E-56 T 13-10-2018 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 147 154 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 103 116 4.9E-29 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 267 282 4.9E-29 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 170 186 4.9E-29 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 143 161 4.9E-29 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 227 244 4.9E-29 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 Gene3D G3DSA:3.30.360.10 148 312 3.9E-116 T 13-10-2018 HCD_05875 400c3c918f44f0315b9538a4e3b24c8d 335 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 154 310 1.1E-54 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04330 9954c50cc9c62a367277386e3b40eb62 675 Gene3D G3DSA:1.10.10.160 113 173 3.2E-77 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily HCD_04330 9954c50cc9c62a367277386e3b40eb62 675 Gene3D G3DSA:3.40.50.300 264 610 3.2E-93 T 13-10-2018 HCD_04330 9954c50cc9c62a367277386e3b40eb62 675 Pfam PF00580 UvrD/REP helicase N-terminal domain 127 255 1.5E-38 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 HCD_04330 9954c50cc9c62a367277386e3b40eb62 675 Pfam PF13361 UvrD-like helicase C-terminal domain 261 593 7.3E-58 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 HCD_04330 9954c50cc9c62a367277386e3b40eb62 675 Gene3D G3DSA:3.40.50.300 11 256 3.2E-77 T 13-10-2018 HCD_04330 9954c50cc9c62a367277386e3b40eb62 675 Gene3D G3DSA:1.10.486.10 366 523 3.2E-93 T 13-10-2018 HCD_04330 9954c50cc9c62a367277386e3b40eb62 675 SUPERFAMILY SSF52540 5 614 5.06E-140 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02380 b3140f29bee0e88d9576a8f5594930c4 410 Pfam PF01979 Amidohydrolase family 56 409 4.3E-47 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 HCD_02380 b3140f29bee0e88d9576a8f5594930c4 410 Gene3D G3DSA:2.30.40.10 19 406 3.4E-126 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 HCD_02380 b3140f29bee0e88d9576a8f5594930c4 410 SUPERFAMILY SSF51338 5 70 1.05E-6 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 HCD_02380 b3140f29bee0e88d9576a8f5594930c4 410 Gene3D G3DSA:3.20.20.140 61 364 3.4E-126 T 13-10-2018 HCD_02380 b3140f29bee0e88d9576a8f5594930c4 410 SUPERFAMILY SSF51556 59 362 1.79E-44 T 13-10-2018 IPR032466 Metal-dependent hydrolase HCD_08260 18bf5eec92f9f34aa7c743ae6b9b21d1 388 Gene3D G3DSA:3.90.1150.10 6 376 7.6E-137 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 HCD_08260 18bf5eec92f9f34aa7c743ae6b9b21d1 388 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 198 217 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site HCD_08260 18bf5eec92f9f34aa7c743ae6b9b21d1 388 SUPERFAMILY SSF53383 5 377 2.76E-101 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase HCD_08260 18bf5eec92f9f34aa7c743ae6b9b21d1 388 PIRSF PIRSF005572 3 385 1.4E-124 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 HCD_08260 18bf5eec92f9f34aa7c743ae6b9b21d1 388 TIGRFAM TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family 6 387 1.3E-230 T 13-10-2018 IPR017773 Cysteine desulfurase NifS, proteobacteria GO:0006534|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 HCD_08260 18bf5eec92f9f34aa7c743ae6b9b21d1 388 Pfam PF00266 Aminotransferase class-V 6 369 1.7E-80 T 13-10-2018 IPR000192 Aminotransferase class V domain HCD_08260 18bf5eec92f9f34aa7c743ae6b9b21d1 388 Gene3D G3DSA:3.40.640.10 17 261 7.6E-137 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 HCD_03250 22010be812232f1586e47332625f132e 481 Pfam PF02589 LUD domain 71 295 2.6E-49 T 13-10-2018 IPR003741 LUD domain HCD_03250 22010be812232f1586e47332625f132e 481 SUPERFAMILY SSF100950 66 296 5.02E-38 T 13-10-2018 IPR037171 NagB/RpiA transferase-like HCD_03250 22010be812232f1586e47332625f132e 481 Pfam PF11870 Domain of unknown function (DUF3390) 386 477 1.3E-18 T 13-10-2018 IPR024569 4Fe-4S binding protein, C-terminal HCD_03250 22010be812232f1586e47332625f132e 481 Gene3D G3DSA:1.10.1060.10 304 393 2.6E-7 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 HCD_03250 22010be812232f1586e47332625f132e 481 TIGRFAM TIGR00273 TIGR00273: iron-sulfur cluster-binding protein 18 462 3.2E-221 T 13-10-2018 IPR004452 4Fe-4S binding protein GO:0019516 HCD_03250 22010be812232f1586e47332625f132e 481 Gene3D G3DSA:3.40.50.10420 132 295 1.1E-9 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily HCD_03250 22010be812232f1586e47332625f132e 481 Pfam PF13183 4Fe-4S dicluster domain 312 378 2.1E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_03250 22010be812232f1586e47332625f132e 481 SUPERFAMILY SSF46548 271 390 4.71E-18 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 HCD_03250 22010be812232f1586e47332625f132e 481 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 364 375 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_04720 ce11ec2db15d30c792cba916896f2626 437 Pfam PF05670 Domain of unknown function (DUF814) 336 417 1.6E-17 T 13-10-2018 IPR008532 Domain of unknown function DUF814 HCD_04720 ce11ec2db15d30c792cba916896f2626 437 Gene3D G3DSA:2.30.310.10 7 155 6.1E-8 T 13-10-2018 HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 Pfam PF13662 Toprim domain 255 324 2.7E-17 T 13-10-2018 IPR006171 TOPRIM domain HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 SMART SM00493 254 325 7.8E-19 T 13-10-2018 IPR006171 TOPRIM domain HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 SMART SM00400 33 87 1.2E-34 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 SUPERFAMILY SSF57783 1 97 2.72E-35 T 13-10-2018 HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 Pfam PF01807 CHC2 zinc finger 3 98 7.3E-39 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 SUPERFAMILY SSF56731 108 411 5.75E-81 T 13-10-2018 HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 Gene3D G3DSA:3.40.1360.10 236 358 6.9E-35 T 13-10-2018 HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 Hamap MF_00974 DNA primase [dnaG]. 1 561 25.928 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 Gene3D G3DSA:3.90.980.10 107 235 8.4E-28 T 13-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 Gene3D G3DSA:1.10.860.10 447 568 5.0E-49 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 TIGRFAM TIGR01391 dnaG: DNA primase 1 408 3.7E-134 T 13-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 Gene3D G3DSA:3.90.580.10 2 99 2.0E-36 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 Pfam PF08275 DNA primase catalytic core, N-terminal domain 118 247 7.2E-30 T 13-10-2018 IPR013264 DNA primase, catalytic core, N-terminal HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 Pfam PF16730 DnaG-primase C-terminal, helicase-binding domain 452 567 2.3E-35 T 13-10-2018 IPR031988 DNA primase DnaG, C-terminal helicase-binding domain HCD_00205 c72ae2275eccbb4058b6e289f4612d3c 568 PIRSF PIRSF002811 1 562 4.5E-135 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 HCD_06440 666f8b11c76efe462f6de873eb1a5555 282 SMART SM00904 157 279 2.1E-33 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 HCD_06440 666f8b11c76efe462f6de873eb1a5555 282 PIRSF PIRSF004491 1 281 1.4E-67 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 HCD_06440 666f8b11c76efe462f6de873eb1a5555 282 Pfam PF01687 Riboflavin kinase 158 278 9.4E-22 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 HCD_06440 666f8b11c76efe462f6de873eb1a5555 282 Gene3D G3DSA:2.40.30.30 160 281 3.1E-25 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 HCD_06440 666f8b11c76efe462f6de873eb1a5555 282 SUPERFAMILY SSF52374 17 160 5.93E-15 T 13-10-2018 HCD_06440 666f8b11c76efe462f6de873eb1a5555 282 SUPERFAMILY SSF82114 148 279 1.81E-31 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 HCD_06440 666f8b11c76efe462f6de873eb1a5555 282 Gene3D G3DSA:3.40.50.620 3 159 6.7E-25 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_06440 666f8b11c76efe462f6de873eb1a5555 282 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 15 278 1.6E-82 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 HCD_06440 666f8b11c76efe462f6de873eb1a5555 282 Pfam PF06574 FAD synthetase 11 140 1.2E-14 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 HCD_08120 35c8b0df1bbde608fab255c6a403e210 270 Pfam PF02548 Ketopantoate hydroxymethyltransferase 10 264 9.6E-104 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 HCD_08120 35c8b0df1bbde608fab255c6a403e210 270 PIRSF PIRSF000388 1 270 1.5E-110 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 HCD_08120 35c8b0df1bbde608fab255c6a403e210 270 Gene3D G3DSA:3.20.20.60 1 269 5.7E-103 T 13-10-2018 HCD_08120 35c8b0df1bbde608fab255c6a403e210 270 SUPERFAMILY SSF51621 11 269 3.3E-95 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 HCD_08120 35c8b0df1bbde608fab255c6a403e210 270 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 11 269 39.005 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 HCD_08120 35c8b0df1bbde608fab255c6a403e210 270 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 9 269 4.8E-128 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 HCD_08505 105642156b8a74f481b1c29086b17b9e 231 SUPERFAMILY SSF52540 2 221 6.24E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_08505 105642156b8a74f481b1c29086b17b9e 231 PIRSF PIRSF039085 1 227 5.5E-98 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 HCD_08505 105642156b8a74f481b1c29086b17b9e 231 Gene3D G3DSA:3.40.50.300 1 226 2.7E-72 T 13-10-2018 HCD_08505 105642156b8a74f481b1c29086b17b9e 231 Pfam PF00005 ABC transporter 3 151 9.5E-38 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_08505 105642156b8a74f481b1c29086b17b9e 231 ProSitePatterns PS00211 ABC transporters family signature. 123 137 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_08505 105642156b8a74f481b1c29086b17b9e 231 SMART SM00382 12 199 2.0E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_04900 7cba069ea54f920ea7151ea9cbe2c6de 264 Gene3D G3DSA:3.30.1150.10 139 262 1.2E-24 T 13-10-2018 HCD_04900 7cba069ea54f920ea7151ea9cbe2c6de 264 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 188 262 7.6E-23 T 13-10-2018 IPR006260 TonB/TolA, C-terminal HCD_04900 7cba069ea54f920ea7151ea9cbe2c6de 264 SUPERFAMILY SSF74653 163 262 5.49E-17 T 13-10-2018 HCD_04900 7cba069ea54f920ea7151ea9cbe2c6de 264 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 188 261 1.1E-20 T 13-10-2018 IPR037682 TonB, C-terminal GO:0055085 HCD_04900 7cba069ea54f920ea7151ea9cbe2c6de 264 PRINTS PR01374 Gram-negative bacterial tonB protein signature 203 221 4.3E-22 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 HCD_04900 7cba069ea54f920ea7151ea9cbe2c6de 264 PRINTS PR01374 Gram-negative bacterial tonB protein signature 182 203 4.3E-22 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 HCD_04900 7cba069ea54f920ea7151ea9cbe2c6de 264 PRINTS PR01374 Gram-negative bacterial tonB protein signature 87 97 4.3E-22 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 HCD_04900 7cba069ea54f920ea7151ea9cbe2c6de 264 PRINTS PR01374 Gram-negative bacterial tonB protein signature 225 242 4.3E-22 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 HCD_04855 f74bca2da83f9fbad661b06272cc3f32 228 Pfam PF03591 AzlC protein 18 154 1.3E-37 T 13-10-2018 IPR011606 Branched-chain amino acid transport, permease HCD_04855 f74bca2da83f9fbad661b06272cc3f32 228 TIGRFAM TIGR00346 azlC: azaleucine resistance protein AzlC 7 227 2.2E-105 T 13-10-2018 IPR004471 Branched-chain amino acid transport, AzlC GO:0016021 HCD_06755 595fe60bd8534432bc3015b64efca7e4 422 Gene3D G3DSA:3.65.10.10 6 416 4.6E-156 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 HCD_06755 595fe60bd8534432bc3015b64efca7e4 422 SUPERFAMILY SSF55205 2 420 1.46E-127 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 HCD_06755 595fe60bd8534432bc3015b64efca7e4 422 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 409 3.4E-92 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 HCD_06755 595fe60bd8534432bc3015b64efca7e4 422 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 419 41.539 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_06755 595fe60bd8534432bc3015b64efca7e4 422 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 418 6.5E-177 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_06755 595fe60bd8534432bc3015b64efca7e4 422 Gene3D G3DSA:3.65.10.10 21 232 4.6E-156 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 HCD_05675 f410fabc74a41d38d4ed2dc4df4d1fb4 344 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 3 200 5.5E-84 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 HCD_05675 f410fabc74a41d38d4ed2dc4df4d1fb4 344 Gene3D G3DSA:3.90.870.10 1 207 8.5E-84 T 13-10-2018 HCD_05675 f410fabc74a41d38d4ed2dc4df4d1fb4 344 SUPERFAMILY SSF55821 4 206 4.81E-80 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily HCD_05675 f410fabc74a41d38d4ed2dc4df4d1fb4 344 PIRSF PIRSF001259 1 298 4.9E-82 T 13-10-2018 HCD_05675 f410fabc74a41d38d4ed2dc4df4d1fb4 344 PIRSF PIRSF001259 287 344 4.3E-6 T 13-10-2018 HCD_05675 f410fabc74a41d38d4ed2dc4df4d1fb4 344 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 8 199 2.2E-81 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 HCD_05675 f410fabc74a41d38d4ed2dc4df4d1fb4 344 Pfam PF00925 GTP cyclohydrolase II 291 342 3.1E-6 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 HCD_05675 f410fabc74a41d38d4ed2dc4df4d1fb4 344 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 204 40.843 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 HCD_05675 f410fabc74a41d38d4ed2dc4df4d1fb4 344 Gene3D G3DSA:3.40.50.10990 217 344 2.8E-6 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 HCD_05675 f410fabc74a41d38d4ed2dc4df4d1fb4 344 SUPERFAMILY SSF142695 207 343 4.84E-16 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 HCD_06025 635536caf615060f46821780270f1486 351 Pfam PF01180 Dihydroorotate dehydrogenase 50 334 1.4E-70 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 HCD_06025 635536caf615060f46821780270f1486 351 SUPERFAMILY SSF51395 1 350 3.66E-86 T 13-10-2018 HCD_06025 635536caf615060f46821780270f1486 351 Gene3D G3DSA:3.20.20.70 1 351 1.5E-104 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_06025 635536caf615060f46821780270f1486 351 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 351 8.7E-153 T 13-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 HCD_06025 635536caf615060f46821780270f1486 351 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 85 104 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 HCD_06025 635536caf615060f46821780270f1486 351 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 286 306 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 HCD_06025 635536caf615060f46821780270f1486 351 PIRSF PIRSF000164 10 351 6.6E-95 T 13-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 HCD_07230 6662ee117a416034c5ad9385d8e29ba1 142 Pfam PF03061 Thioesterase superfamily 60 118 9.2E-5 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 HCD_07230 6662ee117a416034c5ad9385d8e29ba1 142 SUPERFAMILY SSF54637 27 126 1.28E-11 T 13-10-2018 IPR029069 HotDog domain superfamily HCD_07230 6662ee117a416034c5ad9385d8e29ba1 142 Gene3D G3DSA:3.10.129.10 1 142 2.9E-33 T 13-10-2018 HCD_04180 28326904e74bef698ef68e9e9328e958 485 SUPERFAMILY SSF48024 7 110 2.62E-18 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 HCD_04180 28326904e74bef698ef68e9e9328e958 485 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 10 466 3.3E-128 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 HCD_04180 28326904e74bef698ef68e9e9328e958 485 Gene3D G3DSA:3.40.50.300 150 468 5.5E-107 T 13-10-2018 HCD_04180 28326904e74bef698ef68e9e9328e958 485 SUPERFAMILY SSF52540 175 456 3.2E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04180 28326904e74bef698ef68e9e9328e958 485 Gene3D G3DSA:1.10.860.10 2 121 3.9E-25 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal HCD_04180 28326904e74bef698ef68e9e9328e958 485 Pfam PF00772 DnaB-like helicase N terminal domain 9 101 4.7E-17 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 HCD_04180 28326904e74bef698ef68e9e9328e958 485 Pfam PF03796 DnaB-like helicase C terminal domain 177 465 5.2E-89 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 HCD_00700 36d865d656c53769b6b798c8134c556b 304 SMART SM00382 137 290 0.0092 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_00700 36d865d656c53769b6b798c8134c556b 304 Gene3D G3DSA:3.30.450.90 10 112 1.7E-9 T 13-10-2018 HCD_00700 36d865d656c53769b6b798c8134c556b 304 Pfam PF00437 Type II/IV secretion system protein 22 287 1.9E-44 T 13-10-2018 IPR001482 Type II/IV secretion system protein HCD_00700 36d865d656c53769b6b798c8134c556b 304 Gene3D G3DSA:3.40.50.300 113 304 2.9E-48 T 13-10-2018 HCD_00700 36d865d656c53769b6b798c8134c556b 304 SUPERFAMILY SSF52540 18 292 5.9E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01605 665f8324999394362ccf34444bae749a 453 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 4 449 80.618 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 HCD_01605 665f8324999394362ccf34444bae749a 453 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 2 449 7.0E-194 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 HCD_01605 665f8324999394362ccf34444bae749a 453 Gene3D G3DSA:3.90.1300.10 1 452 6.5E-161 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 HCD_01605 665f8324999394362ccf34444bae749a 453 SUPERFAMILY SSF75304 46 448 1.14E-133 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 HCD_01605 665f8324999394362ccf34444bae749a 453 ProSitePatterns PS00571 Amidases signature. 126 157 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 HCD_01605 665f8324999394362ccf34444bae749a 453 Pfam PF01425 Amidase 13 438 4.0E-147 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 HCD_05300 93f18600b5acb10c878313aa09e1e0b6 440 Gene3D G3DSA:3.30.830.10 28 233 3.9E-30 T 13-10-2018 HCD_05300 93f18600b5acb10c878313aa09e1e0b6 440 SUPERFAMILY SSF63411 29 236 5.24E-34 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 HCD_05300 93f18600b5acb10c878313aa09e1e0b6 440 SUPERFAMILY SSF63411 249 429 9.33E-32 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 HCD_05300 93f18600b5acb10c878313aa09e1e0b6 440 Pfam PF05193 Peptidase M16 inactive domain 185 359 4.9E-21 T 13-10-2018 IPR007863 Peptidase M16, C-terminal HCD_05300 93f18600b5acb10c878313aa09e1e0b6 440 Pfam PF00675 Insulinase (Peptidase family M16) 46 179 1.4E-9 T 13-10-2018 IPR011765 Peptidase M16, N-terminal HCD_05300 93f18600b5acb10c878313aa09e1e0b6 440 Gene3D G3DSA:3.30.830.10 240 431 1.7E-34 T 13-10-2018 HCD_00760 2ec28fbfec96d17f9e60f66c6a6208cb 396 Gene3D G3DSA:1.20.1250.20 9 393 9.9E-25 T 13-10-2018 HCD_00760 2ec28fbfec96d17f9e60f66c6a6208cb 396 Pfam PF00083 Sugar (and other) transporter 18 197 9.0E-7 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 HCD_00760 2ec28fbfec96d17f9e60f66c6a6208cb 396 SUPERFAMILY SSF103473 10 389 5.49E-29 T 13-10-2018 IPR036259 MFS transporter superfamily HCD_03055 151e1508b08f0647f6038987c9c1a17f 293 Gene3D G3DSA:1.10.8.1040 37 96 3.8E-9 T 13-10-2018 HCD_03055 151e1508b08f0647f6038987c9c1a17f 293 SUPERFAMILY SSF109998 36 174 2.0E-15 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily HCD_03055 151e1508b08f0647f6038987c9c1a17f 293 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 183 206 - T 13-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 HCD_03055 151e1508b08f0647f6038987c9c1a17f 293 SUPERFAMILY SSF54534 124 246 1.24E-22 T 13-10-2018 HCD_03055 151e1508b08f0647f6038987c9c1a17f 293 Gene3D G3DSA:3.10.50.40 146 252 2.2E-30 T 13-10-2018 HCD_03055 151e1508b08f0647f6038987c9c1a17f 293 Pfam PF00639 PPIC-type PPIASE domain 155 246 1.4E-20 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 HCD_03840 910c58fb786c78f16be7377d2290b444 299 Gene3D G3DSA:2.70.70.10 142 268 8.3E-45 T 13-10-2018 IPR011055 Duplicated hybrid motif HCD_03840 910c58fb786c78f16be7377d2290b444 299 SUPERFAMILY SSF51261 67 266 3.14E-53 T 13-10-2018 IPR011055 Duplicated hybrid motif HCD_03840 910c58fb786c78f16be7377d2290b444 299 Pfam PF01551 Peptidase family M23 167 263 1.8E-30 T 13-10-2018 IPR016047 Peptidase M23 HCD_04350 48ae46f64fe6e325f9ebe9a30f2db672 84 Pfam PF02609 Exonuclease VII small subunit 28 78 2.5E-8 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 HCD_04350 48ae46f64fe6e325f9ebe9a30f2db672 84 SUPERFAMILY SSF116842 23 80 1.7E-10 T 13-10-2018 HCD_04350 48ae46f64fe6e325f9ebe9a30f2db672 84 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 27 81 1.7E-10 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 HCD_04350 48ae46f64fe6e325f9ebe9a30f2db672 84 Gene3D G3DSA:1.10.287.1040 21 84 3.0E-8 T 13-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 HCD_06125 e9cc1ea5d1166873c94f89b8a380638a 253 SUPERFAMILY SSF88659 112 174 7.85E-9 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like HCD_06125 e9cc1ea5d1166873c94f89b8a380638a 253 PRINTS PR00046 Major sigma-70 factor signature 218 233 9.7E-7 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 HCD_06125 e9cc1ea5d1166873c94f89b8a380638a 253 PRINTS PR00046 Major sigma-70 factor signature 201 213 9.7E-7 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 HCD_06125 e9cc1ea5d1166873c94f89b8a380638a 253 PRINTS PR00046 Major sigma-70 factor signature 233 244 9.7E-7 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 HCD_06125 e9cc1ea5d1166873c94f89b8a380638a 253 PRINTS PR00046 Major sigma-70 factor signature 66 79 9.7E-7 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 HCD_06125 e9cc1ea5d1166873c94f89b8a380638a 253 SUPERFAMILY SSF88659 180 248 2.8E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like HCD_06125 e9cc1ea5d1166873c94f89b8a380638a 253 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 40 248 1.9E-59 T 13-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 HCD_06125 e9cc1ea5d1166873c94f89b8a380638a 253 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 37 248 1.6E-28 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 HCD_06125 e9cc1ea5d1166873c94f89b8a380638a 253 Gene3D G3DSA:1.10.1740.10 22 109 6.9E-22 T 13-10-2018 HCD_06125 e9cc1ea5d1166873c94f89b8a380638a 253 SUPERFAMILY SSF88946 27 110 2.55E-17 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 HCD_06125 e9cc1ea5d1166873c94f89b8a380638a 253 Pfam PF04542 Sigma-70 region 2 41 108 5.2E-11 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 HCD_06125 e9cc1ea5d1166873c94f89b8a380638a 253 Gene3D G3DSA:1.20.140.160 110 250 1.2E-26 T 13-10-2018 HCD_06125 e9cc1ea5d1166873c94f89b8a380638a 253 Pfam PF04545 Sigma-70, region 4 197 246 2.3E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 HCD_05520 491e96c252322189d2024f4b97086933 360 Pfam PF15436 Plasminogen-binding protein pgbA N-terminal 25 237 3.7E-78 T 13-10-2018 IPR029276 Plasminogen-binding protein PgbA, N-terminal HCD_05520 491e96c252322189d2024f4b97086933 360 Pfam PF15437 Plasminogen-binding protein pgbA C-terminal 283 358 7.7E-20 T 13-10-2018 IPR032737 Plasminogen-binding protein PgbA, C-terminal HCD_03065 8bdc1a0e64c032784c8a83770cbcb68c 255 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 14 254 1.3E-72 T 13-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 HCD_03065 8bdc1a0e64c032784c8a83770cbcb68c 255 Pfam PF01311 Bacterial export proteins, family 1 15 244 4.3E-53 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 HCD_03065 8bdc1a0e64c032784c8a83770cbcb68c 255 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 7.3E-20 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 HCD_03065 8bdc1a0e64c032784c8a83770cbcb68c 255 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 7.3E-20 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 HCD_03065 8bdc1a0e64c032784c8a83770cbcb68c 255 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 7.3E-20 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 HCD_03065 8bdc1a0e64c032784c8a83770cbcb68c 255 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 7.3E-20 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 HCD_00540 bf08f4d18fecd6b0c3674883eb2b6a85 500 SUPERFAMILY SSF56322 5 495 1.15E-135 T 13-10-2018 IPR005801 ADC synthase GO:0009058 HCD_00540 bf08f4d18fecd6b0c3674883eb2b6a85 500 Pfam PF04715 Anthranilate synthase component I, N terminal region 13 179 1.4E-16 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 HCD_00540 bf08f4d18fecd6b0c3674883eb2b6a85 500 Gene3D G3DSA:3.60.120.10 1 499 3.6E-147 T 13-10-2018 IPR005801 ADC synthase GO:0009058 HCD_00540 bf08f4d18fecd6b0c3674883eb2b6a85 500 PRINTS PR00095 Anthranilate synthase component I signature 429 443 6.1E-22 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 HCD_00540 bf08f4d18fecd6b0c3674883eb2b6a85 500 PRINTS PR00095 Anthranilate synthase component I signature 351 364 6.1E-22 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 HCD_00540 bf08f4d18fecd6b0c3674883eb2b6a85 500 PRINTS PR00095 Anthranilate synthase component I signature 337 350 6.1E-22 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 HCD_00540 bf08f4d18fecd6b0c3674883eb2b6a85 500 PRINTS PR00095 Anthranilate synthase component I signature 444 458 6.1E-22 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 HCD_00540 bf08f4d18fecd6b0c3674883eb2b6a85 500 PIRSF PIRSF001373 1 500 3.0E-213 T 13-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 HCD_00540 bf08f4d18fecd6b0c3674883eb2b6a85 500 Pfam PF00425 chorismate binding enzyme 230 487 1.6E-75 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal HCD_00540 bf08f4d18fecd6b0c3674883eb2b6a85 500 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 10 499 1.5E-248 T 13-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 HCD_07135 d96088eeb68149c8161be2ddb7c63e94 583 Gene3D G3DSA:2.40.30.10 170 277 2.0E-18 T 13-10-2018 HCD_07135 d96088eeb68149c8161be2ddb7c63e94 583 SUPERFAMILY SSF52540 4 189 6.54E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_07135 d96088eeb68149c8161be2ddb7c63e94 583 Pfam PF00009 Elongation factor Tu GTP binding domain 4 132 9.3E-28 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_07135 d96088eeb68149c8161be2ddb7c63e94 583 Gene3D G3DSA:3.40.50.300 1 164 1.2E-41 T 13-10-2018 HCD_07135 d96088eeb68149c8161be2ddb7c63e94 583 Pfam PF09107 Elongation factor SelB, winged helix 539 581 2.6E-13 T 13-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 HCD_07135 d96088eeb68149c8161be2ddb7c63e94 583 SUPERFAMILY SSF46785 530 581 9.25E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily HCD_07135 d96088eeb68149c8161be2ddb7c63e94 583 SUPERFAMILY SSF50447 169 255 4.16E-17 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily HCD_07135 d96088eeb68149c8161be2ddb7c63e94 583 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 154 3.8E-17 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 HCD_07135 d96088eeb68149c8161be2ddb7c63e94 583 Pfam PF03144 Elongation factor Tu domain 2 188 254 2.5E-7 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 HCD_07135 d96088eeb68149c8161be2ddb7c63e94 583 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 5 576 3.7E-73 T 13-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 HCD_07135 d96088eeb68149c8161be2ddb7c63e94 583 Gene3D G3DSA:1.10.10.10 525 582 5.8E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_02630 3a6e78582a2638f4b33ecd6493c8f905 440 Gene3D G3DSA:3.90.1150.10 305 440 1.2E-27 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 HCD_02630 3a6e78582a2638f4b33ecd6493c8f905 440 Gene3D G3DSA:3.40.640.10 34 304 3.0E-32 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 HCD_02630 3a6e78582a2638f4b33ecd6493c8f905 440 Pfam PF00266 Aminotransferase class-V 42 428 8.3E-40 T 13-10-2018 IPR000192 Aminotransferase class V domain HCD_02630 3a6e78582a2638f4b33ecd6493c8f905 440 SUPERFAMILY SSF53383 21 440 6.87E-65 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase HCD_03895 10104e1b481777622837c6d8c30c51ad 264 Gene3D G3DSA:3.40.50.10490 8 213 1.1E-87 T 13-10-2018 HCD_03895 10104e1b481777622837c6d8c30c51ad 264 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 1 223 39.146 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03895 10104e1b481777622837c6d8c30c51ad 264 SUPERFAMILY SSF52313 4 231 6.02E-92 T 13-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily HCD_03895 10104e1b481777622837c6d8c30c51ad 264 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 4 15 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 HCD_03895 10104e1b481777622837c6d8c30c51ad 264 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 1 224 1.2E-110 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03895 10104e1b481777622837c6d8c30c51ad 264 Gene3D G3DSA:1.10.287.610 95 150 1.1E-87 T 13-10-2018 HCD_03895 10104e1b481777622837c6d8c30c51ad 264 PRINTS PR00395 Ribosomal protein S2 signature 85 102 3.4E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03895 10104e1b481777622837c6d8c30c51ad 264 PRINTS PR00395 Ribosomal protein S2 signature 4 22 3.4E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03895 10104e1b481777622837c6d8c30c51ad 264 PRINTS PR00395 Ribosomal protein S2 signature 35 44 3.4E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03895 10104e1b481777622837c6d8c30c51ad 264 PRINTS PR00395 Ribosomal protein S2 signature 194 208 3.4E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03895 10104e1b481777622837c6d8c30c51ad 264 PRINTS PR00395 Ribosomal protein S2 signature 156 173 3.4E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03895 10104e1b481777622837c6d8c30c51ad 264 PRINTS PR00395 Ribosomal protein S2 signature 173 184 3.4E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03895 10104e1b481777622837c6d8c30c51ad 264 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 156 180 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 HCD_03895 10104e1b481777622837c6d8c30c51ad 264 Pfam PF00318 Ribosomal protein S2 7 222 2.6E-93 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_08445 81d98c68fae4a4e2cd8028f7114b5638 608 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 5 605 0.0 T 13-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 HCD_08445 81d98c68fae4a4e2cd8028f7114b5638 608 SUPERFAMILY SSF143975 5 417 1.83E-124 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 HCD_08445 81d98c68fae4a4e2cd8028f7114b5638 608 SUPERFAMILY SSF52016 418 603 2.28E-50 T 13-10-2018 HCD_08445 81d98c68fae4a4e2cd8028f7114b5638 608 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 154 164 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 HCD_08445 81d98c68fae4a4e2cd8028f7114b5638 608 Pfam PF00920 Dehydratase family 66 601 4.0E-146 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 HCD_08445 81d98c68fae4a4e2cd8028f7114b5638 608 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 504 515 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 HCD_08445 81d98c68fae4a4e2cd8028f7114b5638 608 Gene3D G3DSA:3.50.30.80 418 565 5.6E-46 T 13-10-2018 HCD_01965 eba3a7255f868d2346897eb66f1fd9c1 230 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 2 18 7.3E-18 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_01965 eba3a7255f868d2346897eb66f1fd9c1 230 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 104 118 7.3E-18 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_01965 eba3a7255f868d2346897eb66f1fd9c1 230 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 150 163 7.3E-18 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_01965 eba3a7255f868d2346897eb66f1fd9c1 230 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 65 77 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 HCD_01965 eba3a7255f868d2346897eb66f1fd9c1 230 SUPERFAMILY SSF53335 1 209 9.51E-66 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_01965 eba3a7255f868d2346897eb66f1fd9c1 230 Gene3D G3DSA:3.90.120.10 145 222 3.9E-80 T 13-10-2018 HCD_01965 eba3a7255f868d2346897eb66f1fd9c1 230 Pfam PF00145 C-5 cytosine-specific DNA methylase 2 221 4.2E-73 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_01965 eba3a7255f868d2346897eb66f1fd9c1 230 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 4 220 1.3E-63 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_01965 eba3a7255f868d2346897eb66f1fd9c1 230 Gene3D G3DSA:3.40.50.150 4 174 3.9E-80 T 13-10-2018 HCD_04080 324dc62feea6f342b59f2ee072763483 104 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 1 100 26.304 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04080 324dc62feea6f342b59f2ee072763483 104 Gene3D G3DSA:3.30.70.600 1 100 2.8E-36 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily HCD_04080 324dc62feea6f342b59f2ee072763483 104 ProSitePatterns PS00361 Ribosomal protein S10 signature. 27 42 - T 13-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04080 324dc62feea6f342b59f2ee072763483 104 Pfam PF00338 Ribosomal protein S10p/S20e 5 99 1.4E-34 T 13-10-2018 IPR027486 Ribosomal protein S10 domain HCD_04080 324dc62feea6f342b59f2ee072763483 104 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 2 99 3.6E-44 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04080 324dc62feea6f342b59f2ee072763483 104 SUPERFAMILY SSF54999 3 99 8.11E-37 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily HCD_04080 324dc62feea6f342b59f2ee072763483 104 SMART SM01403 5 99 2.4E-50 T 13-10-2018 IPR027486 Ribosomal protein S10 domain HCD_04080 324dc62feea6f342b59f2ee072763483 104 PRINTS PR00971 Ribosomal protein S10 family signature 3 16 6.4E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04080 324dc62feea6f342b59f2ee072763483 104 PRINTS PR00971 Ribosomal protein S10 family signature 59 73 6.4E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04080 324dc62feea6f342b59f2ee072763483 104 PRINTS PR00971 Ribosomal protein S10 family signature 38 53 6.4E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_07315 c6eddf0d2d4d29d6f7cd3388da3d2bd0 187 Pfam PF00691 OmpA family 85 179 3.1E-18 T 13-10-2018 IPR006665 OmpA-like domain HCD_07315 c6eddf0d2d4d29d6f7cd3388da3d2bd0 187 SUPERFAMILY SSF103088 66 185 3.27E-28 T 13-10-2018 IPR036737 OmpA-like domain superfamily HCD_07315 c6eddf0d2d4d29d6f7cd3388da3d2bd0 187 Gene3D G3DSA:3.30.1330.60 69 186 1.1E-30 T 13-10-2018 IPR036737 OmpA-like domain superfamily HCD_07315 c6eddf0d2d4d29d6f7cd3388da3d2bd0 187 PRINTS PR01021 OMPA domain signature 130 146 3.1E-15 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 HCD_07315 c6eddf0d2d4d29d6f7cd3388da3d2bd0 187 PRINTS PR01021 OMPA domain signature 115 130 3.1E-15 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 HCD_07315 c6eddf0d2d4d29d6f7cd3388da3d2bd0 187 PRINTS PR01021 OMPA domain signature 86 108 3.1E-15 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 HCD_03210 45ada0a0a05c50b72ababbea6ac7efa0 228 SUPERFAMILY SSF46626 12 221 3.45E-22 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_03210 45ada0a0a05c50b72ababbea6ac7efa0 228 Gene3D G3DSA:1.10.760.10 37 227 2.9E-53 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_03210 45ada0a0a05c50b72ababbea6ac7efa0 228 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 2 227 5.6E-113 T 13-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO HCD_03210 45ada0a0a05c50b72ababbea6ac7efa0 228 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 4 222 2.5E-87 T 13-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO HCD_03330 02268701fca53c80eb8951c25049220f 375 PRINTS PR00096 Glutamine amidotransferase superfamily signature 235 244 2.2E-11 T 13-10-2018 HCD_03330 02268701fca53c80eb8951c25049220f 375 PRINTS PR00096 Glutamine amidotransferase superfamily signature 347 360 2.2E-11 T 13-10-2018 HCD_03330 02268701fca53c80eb8951c25049220f 375 PRINTS PR00096 Glutamine amidotransferase superfamily signature 263 274 2.2E-11 T 13-10-2018 HCD_03330 02268701fca53c80eb8951c25049220f 375 SUPERFAMILY SSF52317 181 373 3.35E-49 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like HCD_03330 02268701fca53c80eb8951c25049220f 375 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 4 125 2.3E-39 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_03330 02268701fca53c80eb8951c25049220f 375 SUPERFAMILY SSF52021 4 146 2.48E-44 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_03330 02268701fca53c80eb8951c25049220f 375 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 1 375 41.303 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_03330 02268701fca53c80eb8951c25049220f 375 SMART SM01097 1 129 9.3E-58 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_03330 02268701fca53c80eb8951c25049220f 375 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 3 373 1.7E-128 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_03330 02268701fca53c80eb8951c25049220f 375 PRINTS PR00097 Anthranilate synthase component II signature 263 274 3.0E-6 T 13-10-2018 HCD_03330 02268701fca53c80eb8951c25049220f 375 PRINTS PR00097 Anthranilate synthase component II signature 235 244 3.0E-6 T 13-10-2018 HCD_03330 02268701fca53c80eb8951c25049220f 375 PRINTS PR00097 Anthranilate synthase component II signature 347 360 3.0E-6 T 13-10-2018 HCD_03330 02268701fca53c80eb8951c25049220f 375 Gene3D G3DSA:3.50.30.20 1 146 3.6E-42 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_03330 02268701fca53c80eb8951c25049220f 375 Gene3D G3DSA:3.40.50.880 148 375 3.8E-59 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like HCD_03330 02268701fca53c80eb8951c25049220f 375 Pfam PF00117 Glutamine amidotransferase class-I 191 370 3.5E-41 T 13-10-2018 IPR017926 Glutamine amidotransferase HCD_03330 02268701fca53c80eb8951c25049220f 375 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 189 203 2.7E-32 T 13-10-2018 HCD_03330 02268701fca53c80eb8951c25049220f 375 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 305 316 2.7E-32 T 13-10-2018 HCD_03330 02268701fca53c80eb8951c25049220f 375 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 280 297 2.7E-32 T 13-10-2018 HCD_03330 02268701fca53c80eb8951c25049220f 375 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 232 246 2.7E-32 T 13-10-2018 HCD_03330 02268701fca53c80eb8951c25049220f 375 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 263 279 2.7E-32 T 13-10-2018 HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 5 450 27.025 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 351 420 3.2E-10 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 Gene3D G3DSA:1.10.1750.10 341 448 1.9E-12 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 Pfam PF11638 DnaA N-terminal domain 10 69 1.1E-5 T 13-10-2018 IPR024633 DnaA N-terminal domain HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 141 161 4.7E-35 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 203 217 4.7E-35 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 237 264 4.7E-35 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 171 185 4.7E-35 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 401 420 4.7E-35 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 SUPERFAMILY SSF52540 110 315 1.68E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 Gene3D G3DSA:3.40.50.300 91 270 1.8E-48 T 13-10-2018 HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 SMART SM00382 140 266 2.5E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 Pfam PF00308 Bacterial dnaA protein 109 322 1.8E-79 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 Gene3D G3DSA:3.30.300.180 1 89 2.3E-43 T 13-10-2018 IPR038454 DnaA, N-terminal domain superfamily HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 Gene3D G3DSA:1.10.8.60 272 340 7.4E-25 T 13-10-2018 HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 SUPERFAMILY SSF48295 336 443 4.71E-14 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 SMART SM00760 349 420 1.8E-11 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 ProSitePatterns PS01008 DnaA protein signature. 401 420 - T 13-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 HCD_04605 3fb73cc8c6d6e6464337a7e41cdcdc2a 456 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 9 439 2.1E-131 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 HCD_03760 1a9c5c9d854eebc81bf8c35a7ed98a40 198 SUPERFAMILY SSF52833 2 193 2.24E-60 T 13-10-2018 IPR036249 Thioredoxin-like superfamily HCD_03760 1a9c5c9d854eebc81bf8c35a7ed98a40 198 PIRSF PIRSF000239 1 197 1.7E-57 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 HCD_03760 1a9c5c9d854eebc81bf8c35a7ed98a40 198 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 158 192 1.1E-10 T 13-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 HCD_03760 1a9c5c9d854eebc81bf8c35a7ed98a40 198 Pfam PF00578 AhpC/TSA family 5 137 1.3E-31 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 HCD_03760 1a9c5c9d854eebc81bf8c35a7ed98a40 198 Gene3D G3DSA:3.40.30.10 1 195 3.9E-67 T 13-10-2018 HCD_01580 3ca80da8d62e1097b64bd46e156ab8ed 62 SUPERFAMILY SSF143800 1 60 4.51E-22 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01580 3ca80da8d62e1097b64bd46e156ab8ed 62 Pfam PF00830 Ribosomal L28 family 3 60 1.8E-19 T 13-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01580 3ca80da8d62e1097b64bd46e156ab8ed 62 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 61 17.895 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_01580 3ca80da8d62e1097b64bd46e156ab8ed 62 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 57 4.1E-23 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_01580 3ca80da8d62e1097b64bd46e156ab8ed 62 Gene3D G3DSA:2.30.170.40 2 62 2.1E-18 T 13-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00720 b08be72d7d636b02ba7fa506827c87eb 316 Pfam PF01856 Helicobacter outer membrane protein 116 268 4.2E-6 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02200 dd825d4bb19b751b6a163b4e049737d2 251 Gene3D G3DSA:2.30.110.10 81 251 1.3E-56 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 HCD_02200 dd825d4bb19b751b6a163b4e049737d2 251 TIGRFAM TIGR04109 heme_ox_HugZ: heme oxygenase, HugZ family 4 246 1.2E-108 T 13-10-2018 IPR026324 Haem oxygenase, HugZ HCD_02200 dd825d4bb19b751b6a163b4e049737d2 251 Pfam PF10615 Protein of unknown function (DUF2470) 3 74 8.1E-13 T 13-10-2018 IPR019595 Domain of unknown function DUF2470 HCD_02200 dd825d4bb19b751b6a163b4e049737d2 251 SUPERFAMILY SSF50475 87 235 2.4E-26 T 13-10-2018 HCD_02200 dd825d4bb19b751b6a163b4e049737d2 251 SUPERFAMILY SSF50475 4 78 3.18E-9 T 13-10-2018 HCD_02200 dd825d4bb19b751b6a163b4e049737d2 251 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 88 179 2.7E-12 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 HCD_02200 dd825d4bb19b751b6a163b4e049737d2 251 Gene3D G3DSA:3.20.180.10 1 80 2.9E-27 T 13-10-2018 IPR037119 Haem oxygenase HugZ-like superfamily HCD_04040 abde0a51589557c3b169f6bdd1b85ffb 141 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 8.0E-60 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_04040 abde0a51589557c3b169f6bdd1b85ffb 141 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 37.427 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_04040 abde0a51589557c3b169f6bdd1b85ffb 141 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04040 abde0a51589557c3b169f6bdd1b85ffb 141 SUPERFAMILY SSF54686 1 135 6.28E-54 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 HCD_04040 abde0a51589557c3b169f6bdd1b85ffb 141 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 3.1E-47 T 13-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 HCD_04040 abde0a51589557c3b169f6bdd1b85ffb 141 Gene3D G3DSA:3.90.1170.10 1 141 1.8E-52 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 HCD_04040 abde0a51589557c3b169f6bdd1b85ffb 141 PRINTS PR00060 Ribosomal protein L16 signature 58 87 2.9E-34 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_04040 abde0a51589557c3b169f6bdd1b85ffb 141 PRINTS PR00060 Ribosomal protein L16 signature 24 36 2.9E-34 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_04040 abde0a51589557c3b169f6bdd1b85ffb 141 PRINTS PR00060 Ribosomal protein L16 signature 42 53 2.9E-34 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_04040 abde0a51589557c3b169f6bdd1b85ffb 141 PRINTS PR00060 Ribosomal protein L16 signature 88 117 2.9E-34 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_04040 abde0a51589557c3b169f6bdd1b85ffb 141 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_05210 0580dda0784c8fa878894f8c6b57bc60 431 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 3 427 3.4E-151 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 HCD_05210 0580dda0784c8fa878894f8c6b57bc60 431 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 369 400 1.4E-6 T 13-10-2018 IPR001451 Hexapeptide repeat HCD_05210 0580dda0784c8fa878894f8c6b57bc60 431 Gene3D G3DSA:2.160.10.10 243 414 1.8E-38 T 13-10-2018 HCD_05210 0580dda0784c8fa878894f8c6b57bc60 431 Gene3D G3DSA:3.90.550.10 2 242 2.3E-54 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_05210 0580dda0784c8fa878894f8c6b57bc60 431 Pfam PF12804 MobA-like NTP transferase domain 4 123 3.2E-13 T 13-10-2018 IPR025877 MobA-like NTP transferase HCD_05210 0580dda0784c8fa878894f8c6b57bc60 431 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 1 426 33.873 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 HCD_05210 0580dda0784c8fa878894f8c6b57bc60 431 SUPERFAMILY SSF53448 2 247 2.91E-45 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_05210 0580dda0784c8fa878894f8c6b57bc60 431 SUPERFAMILY SSF51161 251 410 1.12E-34 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily HCD_02925 6e22443750e225724e285c78033ef85e 146 Gene3D G3DSA:1.10.150.240 18 94 8.6E-7 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 HCD_02925 6e22443750e225724e285c78033ef85e 146 SUPERFAMILY SSF56784 3 144 3.82E-14 T 13-10-2018 IPR036412 HAD-like superfamily HCD_02925 6e22443750e225724e285c78033ef85e 146 Gene3D G3DSA:3.40.50.1000 6 143 8.6E-7 T 13-10-2018 IPR023214 HAD superfamily HCD_01215 bcef7fa2d1e9d17acb2a1502b1587f9e 188 Pfam PF01856 Helicobacter outer membrane protein 71 167 1.2E-7 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07020 61155fe484515df351ebf293d7a03dde 497 Gene3D G3DSA:3.90.640.10 257 326 1.4E-82 T 13-10-2018 HCD_07020 61155fe484515df351ebf293d7a03dde 497 Gene3D G3DSA:3.30.420.40 10 404 1.4E-82 T 13-10-2018 HCD_07020 61155fe484515df351ebf293d7a03dde 497 SMART SM00842 7 218 8.7E-60 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 HCD_07020 61155fe484515df351ebf293d7a03dde 497 SUPERFAMILY SSF53067 6 219 1.56E-37 T 13-10-2018 HCD_07020 61155fe484515df351ebf293d7a03dde 497 Gene3D G3DSA:3.30.1490.110 106 191 1.4E-82 T 13-10-2018 HCD_07020 61155fe484515df351ebf293d7a03dde 497 SUPERFAMILY SSF53067 221 410 1.18E-32 T 13-10-2018 HCD_07020 61155fe484515df351ebf293d7a03dde 497 Pfam PF14450 Cell division protein FtsA 8 217 3.6E-9 T 13-10-2018 HCD_07020 61155fe484515df351ebf293d7a03dde 497 Hamap MF_02033 Cell division protein FtsA [ftsA]. 3 497 24.391 T 13-10-2018 IPR020823 Cell division protein FtsA HCD_07020 61155fe484515df351ebf293d7a03dde 497 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 6 410 5.2E-132 T 13-10-2018 IPR020823 Cell division protein FtsA HCD_07020 61155fe484515df351ebf293d7a03dde 497 Pfam PF02491 SHS2 domain inserted in FTSA 106 183 2.9E-18 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 HCD_07020 61155fe484515df351ebf293d7a03dde 497 Gene3D G3DSA:3.30.420.40 219 381 1.4E-82 T 13-10-2018 HCD_07020 61155fe484515df351ebf293d7a03dde 497 Pfam PF14450 Cell division protein FtsA 229 406 3.2E-15 T 13-10-2018 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 SUPERFAMILY SSF52335 954 1082 3.92E-29 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 Gene3D G3DSA:3.30.470.20 117 398 1.0E-117 T 13-10-2018 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1066 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 418 542 2.0E-34 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 SUPERFAMILY SSF52440 556 674 4.03E-46 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 SMART SM00851 970 1055 2.2E-25 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 SMART SM01096 415 542 1.6E-50 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 295 302 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1076 12.669 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 SUPERFAMILY SSF52440 1 125 6.91E-43 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 Gene3D G3DSA:3.30.470.20 665 950 3.9E-103 T 13-10-2018 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 126 332 3.0E-65 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 672 876 6.0E-32 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 Pfam PF02142 MGS-like domain 972 1055 8.0E-16 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 Gene3D G3DSA:3.40.50.20 519 661 1.6E-56 T 13-10-2018 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 SUPERFAMILY SSF56059 126 397 2.47E-102 T 13-10-2018 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 Gene3D G3DSA:3.40.50.1380 952 1084 5.1E-35 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 Gene3D G3DSA:3.40.50.20 1 114 8.2E-44 T 13-10-2018 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 SUPERFAMILY SSF48108 392 543 5.75E-40 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.5E-60 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 237 254 6.5E-60 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 295 324 6.5E-60 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 166 178 6.5E-60 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 202 221 6.5E-60 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.5E-60 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 376 394 6.5E-60 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 SUPERFAMILY SSF56059 672 948 7.25E-91 T 13-10-2018 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 839 846 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 HCD_05865 8a80078b30d727a857c07d1d9a5ddfb3 1084 Gene3D G3DSA:1.10.1030.10 399 506 8.9E-25 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_01145 9aca9965171dce6edf498c40f391eaf6 392 Gene3D G3DSA:3.30.460.10 3 145 5.8E-39 T 13-10-2018 HCD_01145 9aca9965171dce6edf498c40f391eaf6 392 Gene3D G3DSA:1.10.3090.10 146 380 2.6E-30 T 13-10-2018 HCD_01145 9aca9965171dce6edf498c40f391eaf6 392 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 173 213 1.5E-10 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 HCD_01145 9aca9965171dce6edf498c40f391eaf6 392 SUPERFAMILY SSF81301 6 142 2.29E-34 T 13-10-2018 HCD_01145 9aca9965171dce6edf498c40f391eaf6 392 SUPERFAMILY SSF81891 144 389 1.96E-38 T 13-10-2018 HCD_01145 9aca9965171dce6edf498c40f391eaf6 392 Pfam PF01743 Poly A polymerase head domain 22 145 2.4E-35 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 HCD_05285 fccd331e7a32e7ce5b13e6fb4abfbec3 342 SUPERFAMILY SSF48452 27 165 2.48E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_05285 fccd331e7a32e7ce5b13e6fb4abfbec3 342 Gene3D G3DSA:1.25.40.10 20 249 4.2E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_02885 2d7fd23fb7db8a52935fafdd6fcd90c7 234 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 3 230 43.054 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 HCD_02885 2d7fd23fb7db8a52935fafdd6fcd90c7 234 SUPERFAMILY SSF56808 7 226 3.79E-83 T 13-10-2018 IPR023674 Ribosomal protein L1-like HCD_02885 2d7fd23fb7db8a52935fafdd6fcd90c7 234 Gene3D G3DSA:3.30.190.20 27 223 1.1E-82 T 13-10-2018 HCD_02885 2d7fd23fb7db8a52935fafdd6fcd90c7 234 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 4 229 8.4E-106 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 HCD_02885 2d7fd23fb7db8a52935fafdd6fcd90c7 234 Gene3D G3DSA:3.40.50.790 69 160 1.1E-82 T 13-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich HCD_02885 2d7fd23fb7db8a52935fafdd6fcd90c7 234 Pfam PF00687 Ribosomal protein L1p/L10e family 32 221 1.8E-56 T 13-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein HCD_02885 2d7fd23fb7db8a52935fafdd6fcd90c7 234 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 140 - T 13-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_02885 2d7fd23fb7db8a52935fafdd6fcd90c7 234 PIRSF PIRSF002155 2 228 7.5E-80 T 13-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_01490 e9289dfa2fd9ac86fdd4e9419395f0d0 114 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 1 109 1.7E-17 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 HCD_01490 e9289dfa2fd9ac86fdd4e9419395f0d0 114 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 110 6.1E-44 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 HCD_01490 e9289dfa2fd9ac86fdd4e9419395f0d0 114 SUPERFAMILY SSF56214 1 110 3.92E-24 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 HCD_01490 e9289dfa2fd9ac86fdd4e9419395f0d0 114 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 1 113 16.758 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 HCD_01490 e9289dfa2fd9ac86fdd4e9419395f0d0 114 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 2 83 3.0E-31 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 HCD_01490 e9289dfa2fd9ac86fdd4e9419395f0d0 114 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 1 110 2.9E-27 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 HCD_01490 e9289dfa2fd9ac86fdd4e9419395f0d0 114 Gene3D G3DSA:3.90.470.20 1 112 4.1E-28 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 HCD_04875 c8f5af23c713f948e389a7e5137b7aba 253 SMART SM00271 193 251 1.8E-7 T 13-10-2018 IPR001623 DnaJ domain HCD_04875 c8f5af23c713f948e389a7e5137b7aba 253 Pfam PF00226 DnaJ domain 195 248 7.2E-9 T 13-10-2018 IPR001623 DnaJ domain HCD_04875 c8f5af23c713f948e389a7e5137b7aba 253 Gene3D G3DSA:1.10.287.110 182 253 6.3E-11 T 13-10-2018 IPR036869 Chaperone J-domain superfamily HCD_04875 c8f5af23c713f948e389a7e5137b7aba 253 SUPERFAMILY SSF46565 189 251 4.32E-14 T 13-10-2018 IPR036869 Chaperone J-domain superfamily HCD_05860 86f76b087cb6e6d2d55fee88c33419f8 143 SUPERFAMILY SSF55821 10 142 6.71E-8 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily HCD_04520 c7664891920da8d7f82c1a576fdbaa7e 870 Gene3D G3DSA:2.40.170.20 400 870 2.0E-73 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily HCD_04520 c7664891920da8d7f82c1a576fdbaa7e 870 Pfam PF07715 TonB-dependent Receptor Plug Domain 47 140 1.9E-18 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain HCD_04520 c7664891920da8d7f82c1a576fdbaa7e 870 Gene3D G3DSA:2.170.130.10 37 146 3.2E-32 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily HCD_04520 c7664891920da8d7f82c1a576fdbaa7e 870 Gene3D G3DSA:2.40.170.20 147 357 1.2E-20 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily HCD_04520 c7664891920da8d7f82c1a576fdbaa7e 870 SUPERFAMILY SSF56935 46 870 3.11E-58 T 13-10-2018 HCD_04520 c7664891920da8d7f82c1a576fdbaa7e 870 Pfam PF00593 TonB dependent receptor 409 868 9.8E-28 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel HCD_06785 d0e8dd67335c16d397634413bcdf6d91 338 SUPERFAMILY SSF52402 14 197 2.65E-38 T 13-10-2018 HCD_06785 d0e8dd67335c16d397634413bcdf6d91 338 Gene3D G3DSA:3.40.50.620 11 215 4.3E-38 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_06785 d0e8dd67335c16d397634413bcdf6d91 338 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 4 280 16.593 T 13-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 HCD_06785 d0e8dd67335c16d397634413bcdf6d91 338 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 16 188 3.3E-42 T 13-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 HCD_06785 d0e8dd67335c16d397634413bcdf6d91 338 Pfam PF01171 PP-loop family 16 187 6.5E-48 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 HCD_00735 003d30442eccc93f0dedc485d97cfad2 687 Hamap MF_01491 Ribonuclease J [rnj]. 134 687 41.543 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 HCD_00735 003d30442eccc93f0dedc485d97cfad2 687 Gene3D G3DSA:3.10.20.580 581 686 3.8E-9 T 13-10-2018 HCD_00735 003d30442eccc93f0dedc485d97cfad2 687 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 139 685 3.9E-217 T 13-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 HCD_00735 003d30442eccc93f0dedc485d97cfad2 687 SUPERFAMILY SSF56281 140 555 3.67E-86 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like HCD_00735 003d30442eccc93f0dedc485d97cfad2 687 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 487 535 7.8E-10 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain HCD_00735 003d30442eccc93f0dedc485d97cfad2 687 Gene3D G3DSA:3.60.15.10 140 568 1.0E-169 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like HCD_00735 003d30442eccc93f0dedc485d97cfad2 687 Pfam PF00753 Metallo-beta-lactamase superfamily 148 231 6.0E-12 T 13-10-2018 IPR001279 Metallo-beta-lactamase HCD_00735 003d30442eccc93f0dedc485d97cfad2 687 SMART SM00849 151 347 4.7E-16 T 13-10-2018 IPR001279 Metallo-beta-lactamase HCD_00735 003d30442eccc93f0dedc485d97cfad2 687 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 496 524 - T 13-10-2018 IPR001587 Ribonuclease J, conserved site HCD_00735 003d30442eccc93f0dedc485d97cfad2 687 Gene3D G3DSA:3.40.50.10710 339 497 1.0E-169 T 13-10-2018 HCD_04315 33acecd09bd9da7b4e55784444a22a71 157 SUPERFAMILY SSF52374 1 156 2.68E-44 T 13-10-2018 HCD_04315 33acecd09bd9da7b4e55784444a22a71 157 Gene3D G3DSA:3.40.50.620 1 157 8.3E-57 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_04315 33acecd09bd9da7b4e55784444a22a71 157 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 157 31.465 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 HCD_04315 33acecd09bd9da7b4e55784444a22a71 157 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 155 1.2E-56 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 HCD_04315 33acecd09bd9da7b4e55784444a22a71 157 Pfam PF01467 Cytidylyltransferase-like 6 134 7.5E-26 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 HCD_04315 33acecd09bd9da7b4e55784444a22a71 157 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 62 2.6E-19 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 HCD_04315 33acecd09bd9da7b4e55784444a22a71 157 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 7.7E-48 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 HCD_04315 33acecd09bd9da7b4e55784444a22a71 157 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 7.7E-48 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 HCD_04315 33acecd09bd9da7b4e55784444a22a71 157 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 7.7E-48 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 HCD_04315 33acecd09bd9da7b4e55784444a22a71 157 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 7.7E-48 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 HCD_04315 33acecd09bd9da7b4e55784444a22a71 157 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 7.7E-48 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 HCD_03415 2c3c5686ed35f5549bd0e68f3b746bad 560 Pfam PF17200 Single Cache domain 2 74 193 6.7E-22 T 13-10-2018 IPR033480 Single Cache domain 2 HCD_03415 2c3c5686ed35f5549bd0e68f3b746bad 560 SUPERFAMILY SSF58104 250 560 4.32E-58 T 13-10-2018 HCD_03415 2c3c5686ed35f5549bd0e68f3b746bad 560 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 374 516 5.6E-37 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_03415 2c3c5686ed35f5549bd0e68f3b746bad 560 Gene3D G3DSA:3.30.450.20 28 207 1.0E-67 T 13-10-2018 HCD_03415 2c3c5686ed35f5549bd0e68f3b746bad 560 SMART SM01049 44 134 1.4E-9 T 13-10-2018 IPR033480 Single Cache domain 2 HCD_03415 2c3c5686ed35f5549bd0e68f3b746bad 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 425 454 5.0E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 HCD_03415 2c3c5686ed35f5549bd0e68f3b746bad 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 316 345 5.0E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 HCD_03415 2c3c5686ed35f5549bd0e68f3b746bad 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 423 5.0E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 HCD_03415 2c3c5686ed35f5549bd0e68f3b746bad 560 SMART SM00283 298 559 2.6E-60 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_03415 2c3c5686ed35f5549bd0e68f3b746bad 560 SMART SM00304 228 283 5.2E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 HCD_03415 2c3c5686ed35f5549bd0e68f3b746bad 560 Gene3D G3DSA:1.10.287.950 228 560 8.0E-57 T 13-10-2018 HCD_04390 6d855098d99cf528b2744d0f38fe060d 439 SUPERFAMILY SSF56176 356 436 1.66E-17 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 HCD_04390 6d855098d99cf528b2744d0f38fe060d 439 Pfam PF00571 CBS domain 222 276 4.1E-4 T 13-10-2018 IPR000644 CBS domain HCD_04390 6d855098d99cf528b2744d0f38fe060d 439 Pfam PF00571 CBS domain 292 341 1.3E-7 T 13-10-2018 IPR000644 CBS domain HCD_04390 6d855098d99cf528b2744d0f38fe060d 439 SUPERFAMILY SSF54631 208 344 2.2E-29 T 13-10-2018 HCD_04390 6d855098d99cf528b2744d0f38fe060d 439 Pfam PF03471 Transporter associated domain 357 434 3.3E-18 T 13-10-2018 IPR005170 Transporter-associated domain HCD_04390 6d855098d99cf528b2744d0f38fe060d 439 Gene3D G3DSA:3.30.465.10 354 438 3.4E-18 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 HCD_04390 6d855098d99cf528b2744d0f38fe060d 439 SMART SM00116 293 341 1.1 T 13-10-2018 IPR000644 CBS domain HCD_04390 6d855098d99cf528b2744d0f38fe060d 439 SMART SM00116 230 279 16.0 T 13-10-2018 IPR000644 CBS domain HCD_04390 6d855098d99cf528b2744d0f38fe060d 439 Gene3D G3DSA:3.10.580.10 203 353 1.3E-49 T 13-10-2018 HCD_04390 6d855098d99cf528b2744d0f38fe060d 439 Pfam PF01595 Domain of unknown function DUF21 12 204 5.9E-49 T 13-10-2018 IPR002550 CNNM, transmembrane domain HCD_04390 6d855098d99cf528b2744d0f38fe060d 439 SMART SM01091 356 435 2.4E-22 T 13-10-2018 IPR005170 Transporter-associated domain HCD_03510 d3f17e61761ceb6ac13d4a7323eca433 231 Pfam PF01048 Phosphorylase superfamily 3 227 8.1E-50 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 HCD_03510 d3f17e61761ceb6ac13d4a7323eca433 231 SUPERFAMILY SSF53167 3 228 1.44E-62 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 HCD_03510 d3f17e61761ceb6ac13d4a7323eca433 231 Gene3D G3DSA:3.40.50.1580 1 230 8.2E-67 T 13-10-2018 HCD_03510 d3f17e61761ceb6ac13d4a7323eca433 231 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 3 230 2.8E-45 T 13-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 HCD_00010 9d9d773bab845197695b3bbe53967f70 156 SUPERFAMILY SSF52121 7 154 3.92E-54 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 HCD_00010 9d9d773bab845197695b3bbe53967f70 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 15 150 1.8E-57 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 HCD_00010 9d9d773bab845197695b3bbe53967f70 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 9 154 29.109 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 HCD_00010 9d9d773bab845197695b3bbe53967f70 156 Gene3D G3DSA:3.40.50.960 1 155 4.8E-52 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 HCD_00010 9d9d773bab845197695b3bbe53967f70 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 15 150 2.8E-49 T 13-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 HCD_00170 f7a8569fdb4ab05a5aa7f965ff021030 321 SUPERFAMILY SSF50341 16 172 2.49E-19 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 HCD_00170 f7a8569fdb4ab05a5aa7f965ff021030 321 Gene3D G3DSA:2.40.50.180 40 172 1.1E-14 T 13-10-2018 HCD_00170 f7a8569fdb4ab05a5aa7f965ff021030 321 PIRSF PIRSF002867 1 321 7.4E-101 T 13-10-2018 IPR024181 Chemotaxis response regulator CheV HCD_00170 f7a8569fdb4ab05a5aa7f965ff021030 321 SMART SM00448 197 314 2.5E-14 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_00170 f7a8569fdb4ab05a5aa7f965ff021030 321 SUPERFAMILY SSF52172 196 317 5.12E-20 T 13-10-2018 IPR011006 CheY-like superfamily HCD_00170 f7a8569fdb4ab05a5aa7f965ff021030 321 Pfam PF01584 CheW-like domain 21 174 6.7E-26 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 HCD_00170 f7a8569fdb4ab05a5aa7f965ff021030 321 Gene3D G3DSA:3.40.50.2300 182 320 6.3E-22 T 13-10-2018 HCD_00170 f7a8569fdb4ab05a5aa7f965ff021030 321 SMART SM00260 17 172 1.3E-30 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 HCD_00170 f7a8569fdb4ab05a5aa7f965ff021030 321 Gene3D G3DSA:2.30.30.40 24 166 1.1E-14 T 13-10-2018 HCD_00170 f7a8569fdb4ab05a5aa7f965ff021030 321 Pfam PF00072 Response regulator receiver domain 199 311 2.6E-15 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_03770 ec147d54560f98822a599d9d42ef450e 386 Pfam PF01098 Cell cycle protein 4 385 1.0E-101 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_03770 ec147d54560f98822a599d9d42ef450e 386 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 342 366 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_06390 103907a20725fc0a7a24df8541d91be4 171 Gene3D G3DSA:1.20.120.1890 33 147 1.2E-43 T 13-10-2018 IPR038315 FLiS export co-chaperone, HP1076 superfamily HCD_06390 103907a20725fc0a7a24df8541d91be4 171 Pfam PF16522 Flagellar FLiS export co-chaperone, HP1076 6 149 4.1E-54 T 13-10-2018 IPR032411 Flagellar FLiS export co-chaperone, HP1076 HCD_05220 3051f9185024169aa9be3d997e1db53c 314 Gene3D G3DSA:3.40.50.720 2 128 5.6E-24 T 13-10-2018 HCD_05220 3051f9185024169aa9be3d997e1db53c 314 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 142 248 2.1E-12 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 HCD_05220 3051f9185024169aa9be3d997e1db53c 314 Gene3D G3DSA:3.30.360.10 130 312 1.5E-49 T 13-10-2018 HCD_05220 3051f9185024169aa9be3d997e1db53c 314 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 124 1.5E-24 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 HCD_05220 3051f9185024169aa9be3d997e1db53c 314 SUPERFAMILY SSF51735 3 169 1.71E-22 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_02705 abe952b1708b86dec9a5b8499d1d2c7e 227 SUPERFAMILY SSF51278 109 226 4.71E-37 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02705 abe952b1708b86dec9a5b8499d1d2c7e 227 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 114 208 1.7E-34 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02705 abe952b1708b86dec9a5b8499d1d2c7e 227 Pfam PF00699 Urease beta subunit 108 206 4.0E-34 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02705 abe952b1708b86dec9a5b8499d1d2c7e 227 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 101 7.7E-44 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02705 abe952b1708b86dec9a5b8499d1d2c7e 227 Gene3D G3DSA:3.30.280.10 1 103 9.9E-41 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02705 abe952b1708b86dec9a5b8499d1d2c7e 227 SUPERFAMILY SSF54111 1 104 4.58E-38 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02705 abe952b1708b86dec9a5b8499d1d2c7e 227 Pfam PF00547 Urease, gamma subunit 1 100 1.3E-37 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02705 abe952b1708b86dec9a5b8499d1d2c7e 227 Gene3D G3DSA:2.10.150.10 104 227 1.8E-42 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02705 abe952b1708b86dec9a5b8499d1d2c7e 227 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 100 2.0E-28 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_02705 abe952b1708b86dec9a5b8499d1d2c7e 227 PIRSF PIRSF001225 1 227 1.6E-97 T 13-10-2018 IPR008223 Urease, gamma-beta subunit GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 HCD_04150 80fc9a494423548b510c1d8b185c44cc 993 SUPERFAMILY SSF52540 199 411 1.13E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04150 80fc9a494423548b510c1d8b185c44cc 993 Gene3D G3DSA:3.90.1570.50 5 234 5.4E-27 T 13-10-2018 HCD_04150 80fc9a494423548b510c1d8b185c44cc 993 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 5 191 8.2E-35 T 13-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 HCD_04150 80fc9a494423548b510c1d8b185c44cc 993 Gene3D G3DSA:3.40.50.300 418 684 2.4E-42 T 13-10-2018 HCD_04150 80fc9a494423548b510c1d8b185c44cc 993 Gene3D G3DSA:3.90.640.50 29 106 5.4E-27 T 13-10-2018 HCD_04150 80fc9a494423548b510c1d8b185c44cc 993 Pfam PF04851 Type III restriction enzyme, res subunit 242 396 1.7E-17 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 HCD_04150 80fc9a494423548b510c1d8b185c44cc 993 Gene3D G3DSA:3.40.50.300 240 416 3.1E-51 T 13-10-2018 HCD_04150 80fc9a494423548b510c1d8b185c44cc 993 SMART SM00487 237 425 1.6E-11 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain HCD_04150 80fc9a494423548b510c1d8b185c44cc 993 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 7 675 6.0E-202 T 13-10-2018 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 HCD_00740 a7211098dd0001a15a50a03bad39a78d 331 Pfam PF00571 CBS domain 286 324 9.9E-4 T 13-10-2018 IPR000644 CBS domain HCD_00740 a7211098dd0001a15a50a03bad39a78d 331 Pfam PF00571 CBS domain 206 262 1.6E-8 T 13-10-2018 IPR000644 CBS domain HCD_00740 a7211098dd0001a15a50a03bad39a78d 331 PIRSF PIRSF004692 1 328 2.7E-119 T 13-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 HCD_00740 a7211098dd0001a15a50a03bad39a78d 331 SUPERFAMILY SSF53697 10 327 4.23E-56 T 13-10-2018 HCD_00740 a7211098dd0001a15a50a03bad39a78d 331 Gene3D G3DSA:3.10.580.10 202 324 8.9E-31 T 13-10-2018 HCD_00740 a7211098dd0001a15a50a03bad39a78d 331 Pfam PF01380 SIS domain 51 175 2.2E-23 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 HCD_00740 a7211098dd0001a15a50a03bad39a78d 331 Gene3D G3DSA:3.40.50.10490 4 201 3.0E-57 T 13-10-2018 HCD_00740 a7211098dd0001a15a50a03bad39a78d 331 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 50 318 2.4E-127 T 13-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 HCD_00740 a7211098dd0001a15a50a03bad39a78d 331 SMART SM00116 214 262 5.4E-5 T 13-10-2018 IPR000644 CBS domain HCD_00025 6ac230209917242e0528b319b24f1fd0 227 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 3 219 8.5E-56 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_00025 6ac230209917242e0528b319b24f1fd0 227 SMART SM00934 2 223 6.5E-62 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_00025 6ac230209917242e0528b319b24f1fd0 227 SUPERFAMILY SSF51366 2 225 2.7E-54 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 HCD_00025 6ac230209917242e0528b319b24f1fd0 227 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 1 226 30.168 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_00025 6ac230209917242e0528b319b24f1fd0 227 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 56 69 - T 13-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_00025 6ac230209917242e0528b319b24f1fd0 227 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 1 219 3.9E-38 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_00025 6ac230209917242e0528b319b24f1fd0 227 Gene3D G3DSA:3.20.20.70 1 227 1.5E-66 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_02390 56960fdddbae85d72894028282e9de7c 238 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 19 227 1.2E-77 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 HCD_03535 cfdbceb2a8593b8545bf366f7e649e83 141 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 14 136 26.69 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 HCD_03535 cfdbceb2a8593b8545bf366f7e649e83 141 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 137 1.1E-60 T 13-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03535 cfdbceb2a8593b8545bf366f7e649e83 141 Gene3D G3DSA:3.90.1180.10 1 139 1.1E-54 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 HCD_03535 cfdbceb2a8593b8545bf366f7e649e83 141 SUPERFAMILY SSF52161 2 134 2.88E-51 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 HCD_03535 cfdbceb2a8593b8545bf366f7e649e83 141 ProSitePatterns PS00783 Ribosomal protein L13 signature. 104 126 - T 13-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 HCD_03535 cfdbceb2a8593b8545bf366f7e649e83 141 PIRSF PIRSF002181 1 141 3.2E-45 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 HCD_03535 cfdbceb2a8593b8545bf366f7e649e83 141 Pfam PF00572 Ribosomal protein L13 14 134 5.6E-52 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 HCD_06825 09c984140758961d0ddbe2d6406282a7 161 Gene3D G3DSA:3.30.428.10 1 159 4.7E-42 T 13-10-2018 IPR036265 HIT-like superfamily HCD_06825 09c984140758961d0ddbe2d6406282a7 161 Pfam PF01230 HIT domain 34 124 4.0E-13 T 13-10-2018 IPR001310 Histidine triad (HIT) protein HCD_06825 09c984140758961d0ddbe2d6406282a7 161 SUPERFAMILY SSF54197 1 152 6.65E-35 T 13-10-2018 IPR036265 HIT-like superfamily HCD_00790 40ed49f6b61e7e5a61baf60cd129f662 150 TIGRFAM TIGR02805 exbB2: tonB-system energizer ExbB 1 133 4.6E-50 T 13-10-2018 IPR014172 TonB-system energizer ExbB type-2 GO:0016020|GO:0055085 HCD_00790 40ed49f6b61e7e5a61baf60cd129f662 150 Pfam PF01618 MotA/TolQ/ExbB proton channel family 47 133 2.7E-27 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel HCD_01310 c2019fbf2531b8aef6e3fd90d24ca0d7 107 SUPERFAMILY SSF54862 11 89 1.02E-17 T 13-10-2018 HCD_01310 c2019fbf2531b8aef6e3fd90d24ca0d7 107 Pfam PF13237 4Fe-4S dicluster domain 13 67 1.6E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_01310 c2019fbf2531b8aef6e3fd90d24ca0d7 107 Gene3D G3DSA:3.30.70.3270 40 102 6.2E-6 T 13-10-2018 HCD_01310 c2019fbf2531b8aef6e3fd90d24ca0d7 107 Gene3D G3DSA:3.30.70.20 2 39 7.7E-7 T 13-10-2018 HCD_01310 c2019fbf2531b8aef6e3fd90d24ca0d7 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 19 30 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_01310 c2019fbf2531b8aef6e3fd90d24ca0d7 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 56 67 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_06505 578f3b002f28c07a191e3d592e1c7ec4 299 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 77 97 9.5E-68 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06505 578f3b002f28c07a191e3d592e1c7ec4 299 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 108 132 9.5E-68 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06505 578f3b002f28c07a191e3d592e1c7ec4 299 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 56 71 9.5E-68 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06505 578f3b002f28c07a191e3d592e1c7ec4 299 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 134 154 9.5E-68 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06505 578f3b002f28c07a191e3d592e1c7ec4 299 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 157 172 9.5E-68 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06505 578f3b002f28c07a191e3d592e1c7ec4 299 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 246 262 9.5E-68 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06505 578f3b002f28c07a191e3d592e1c7ec4 299 Gene3D G3DSA:3.30.930.10 1 209 9.9E-107 T 13-10-2018 HCD_06505 578f3b002f28c07a191e3d592e1c7ec4 299 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 2 293 9.2E-166 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06505 578f3b002f28c07a191e3d592e1c7ec4 299 Gene3D G3DSA:1.20.58.180 210 288 5.4E-32 T 13-10-2018 HCD_06505 578f3b002f28c07a191e3d592e1c7ec4 299 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 4 284 1.3E-141 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06505 578f3b002f28c07a191e3d592e1c7ec4 299 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 2 286 58.76 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 HCD_06505 578f3b002f28c07a191e3d592e1c7ec4 299 SUPERFAMILY SSF55681 3 285 9.28E-124 T 13-10-2018 HCD_02730 18f1bdfbeea7a0f8259e20ae38bc605b 250 Pfam PF00106 short chain dehydrogenase 3 188 7.1E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_02730 18f1bdfbeea7a0f8259e20ae38bc605b 250 SUPERFAMILY SSF51735 3 233 5.67E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_02730 18f1bdfbeea7a0f8259e20ae38bc605b 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 7.8E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_02730 18f1bdfbeea7a0f8259e20ae38bc605b 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 7.8E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_02730 18f1bdfbeea7a0f8259e20ae38bc605b 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 7.8E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_02730 18f1bdfbeea7a0f8259e20ae38bc605b 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 3.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_02730 18f1bdfbeea7a0f8259e20ae38bc605b 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 3.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_02730 18f1bdfbeea7a0f8259e20ae38bc605b 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 3.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_02730 18f1bdfbeea7a0f8259e20ae38bc605b 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 3.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_02730 18f1bdfbeea7a0f8259e20ae38bc605b 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 3.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_02730 18f1bdfbeea7a0f8259e20ae38bc605b 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 3.5E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_02730 18f1bdfbeea7a0f8259e20ae38bc605b 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 HCD_02730 18f1bdfbeea7a0f8259e20ae38bc605b 250 Gene3D G3DSA:3.40.50.720 4 236 3.0E-58 T 13-10-2018 HCD_04820 baccaf838fd9af21698fe8043299183b 272 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 46 4.3E-8 T 13-10-2018 IPR001451 Hexapeptide repeat HCD_04820 baccaf838fd9af21698fe8043299183b 272 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 105 139 7.6E-9 T 13-10-2018 IPR001451 Hexapeptide repeat HCD_04820 baccaf838fd9af21698fe8043299183b 272 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 257 41.362 T 13-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 HCD_04820 baccaf838fd9af21698fe8043299183b 272 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 4 255 5.9E-104 T 13-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 HCD_04820 baccaf838fd9af21698fe8043299183b 272 SUPERFAMILY SSF51161 4 257 4.72E-69 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily HCD_04820 baccaf838fd9af21698fe8043299183b 272 Gene3D G3DSA:1.20.1180.10 194 272 2.6E-38 T 13-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 HCD_04820 baccaf838fd9af21698fe8043299183b 272 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 176 255 5.5E-14 T 13-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 HCD_04820 baccaf838fd9af21698fe8043299183b 272 Gene3D G3DSA:2.160.10.10 1 193 3.6E-55 T 13-10-2018 HCD_04820 baccaf838fd9af21698fe8043299183b 272 PIRSF PIRSF000456 1 264 4.4E-101 T 13-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 HCD_03790 32b39cfb12dacdece4143548df7097ff 614 Pfam PF00905 Penicillin binding protein transpeptidase domain 282 588 6.5E-72 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 HCD_03790 32b39cfb12dacdece4143548df7097ff 614 Gene3D G3DSA:3.30.450.330 259 593 1.3E-80 T 13-10-2018 HCD_03790 32b39cfb12dacdece4143548df7097ff 614 SUPERFAMILY SSF56519 62 254 3.01E-24 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 HCD_03790 32b39cfb12dacdece4143548df7097ff 614 Gene3D G3DSA:3.40.710.10 315 509 1.3E-80 T 13-10-2018 HCD_03790 32b39cfb12dacdece4143548df7097ff 614 Gene3D G3DSA:3.90.1310.30 58 255 3.7E-22 T 13-10-2018 HCD_03790 32b39cfb12dacdece4143548df7097ff 614 SUPERFAMILY SSF56601 258 596 1.02E-70 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like HCD_03790 32b39cfb12dacdece4143548df7097ff 614 Pfam PF03717 Penicillin-binding Protein dimerisation domain 62 237 3.0E-14 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 HCD_05275 23a39251d54f36946f94f87a93877ebd 234 Gene3D G3DSA:1.10.1520.10 13 155 8.8E-44 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 HCD_05275 23a39251d54f36946f94f87a93877ebd 234 Pfam PF14622 Ribonuclease-III-like 26 148 6.5E-31 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 HCD_05275 23a39251d54f36946f94f87a93877ebd 234 Pfam PF00035 Double-stranded RNA binding motif 164 230 1.2E-15 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain HCD_05275 23a39251d54f36946f94f87a93877ebd 234 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 16 229 4.2E-69 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 HCD_05275 23a39251d54f36946f94f87a93877ebd 234 Gene3D G3DSA:3.30.160.20 162 234 2.9E-19 T 13-10-2018 HCD_05275 23a39251d54f36946f94f87a93877ebd 234 SMART SM00535 28 157 4.2E-51 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 HCD_05275 23a39251d54f36946f94f87a93877ebd 234 SUPERFAMILY SSF54768 159 232 9.43E-21 T 13-10-2018 HCD_05275 23a39251d54f36946f94f87a93877ebd 234 SUPERFAMILY SSF69065 13 164 4.01E-44 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 HCD_05275 23a39251d54f36946f94f87a93877ebd 234 Hamap MF_00104 Ribonuclease 3 [rnc]. 16 227 28.245 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 HCD_05275 23a39251d54f36946f94f87a93877ebd 234 ProSitePatterns PS00517 Ribonuclease III family signature. 46 54 - T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 HCD_05275 23a39251d54f36946f94f87a93877ebd 234 SMART SM00358 164 231 1.2E-21 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain HCD_01305 fc0cc803d26847f378e96ecdb750784d 375 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 275 368 3.9E-22 T 13-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II HCD_01305 fc0cc803d26847f378e96ecdb750784d 375 SUPERFAMILY SSF52518 3 258 1.18E-63 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold HCD_01305 fc0cc803d26847f378e96ecdb750784d 375 Gene3D G3DSA:3.40.50.920 265 375 3.0E-20 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 HCD_01305 fc0cc803d26847f378e96ecdb750784d 375 SUPERFAMILY SSF52922 268 375 1.88E-16 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 HCD_01305 fc0cc803d26847f378e96ecdb750784d 375 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 15 243 3.0E-68 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 HCD_01305 fc0cc803d26847f378e96ecdb750784d 375 Gene3D G3DSA:3.40.50.970 1 191 2.4E-66 T 13-10-2018 HCD_06020 50ead3834b549866f5f1b1e2f2bd13a8 683 SUPERFAMILY SSF140356 2 100 3.79E-34 T 13-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 HCD_06020 50ead3834b549866f5f1b1e2f2bd13a8 683 Pfam PF02503 Polyphosphate kinase middle domain 118 320 3.3E-47 T 13-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 HCD_06020 50ead3834b549866f5f1b1e2f2bd13a8 683 Pfam PF13090 Polyphosphate kinase C-terminal domain 329 667 1.0E-134 T 13-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 HCD_06020 50ead3834b549866f5f1b1e2f2bd13a8 683 PIRSF PIRSF015589 1 681 5.0E-250 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 HCD_06020 50ead3834b549866f5f1b1e2f2bd13a8 683 Gene3D G3DSA:3.30.870.10 321 497 4.5E-62 T 13-10-2018 HCD_06020 50ead3834b549866f5f1b1e2f2bd13a8 683 SUPERFAMILY SSF56024 321 490 8.79E-45 T 13-10-2018 HCD_06020 50ead3834b549866f5f1b1e2f2bd13a8 683 Hamap MF_00347 Polyphosphate kinase [ppk]. 1 673 26.231 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 HCD_06020 50ead3834b549866f5f1b1e2f2bd13a8 683 SUPERFAMILY SSF143724 109 308 1.12E-42 T 13-10-2018 HCD_06020 50ead3834b549866f5f1b1e2f2bd13a8 683 Pfam PF13089 Polyphosphate kinase N-terminal domain 4 107 1.2E-33 T 13-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 HCD_06020 50ead3834b549866f5f1b1e2f2bd13a8 683 SUPERFAMILY SSF56024 500 671 1.73E-60 T 13-10-2018 HCD_06020 50ead3834b549866f5f1b1e2f2bd13a8 683 Gene3D G3DSA:3.30.870.10 503 674 6.7E-59 T 13-10-2018 HCD_06020 50ead3834b549866f5f1b1e2f2bd13a8 683 Gene3D G3DSA:3.30.1840.10 1 310 2.8E-82 T 13-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 HCD_06020 50ead3834b549866f5f1b1e2f2bd13a8 683 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 4 667 1.1E-220 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 HCD_08530 3ebab8feb0ab8a55952bf8cf6ea78bcb 407 SUPERFAMILY SSF103473 7 402 3.53E-36 T 13-10-2018 IPR036259 MFS transporter superfamily HCD_08530 3ebab8feb0ab8a55952bf8cf6ea78bcb 407 Pfam PF07690 Major Facilitator Superfamily 16 361 1.1E-19 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 HCD_08530 3ebab8feb0ab8a55952bf8cf6ea78bcb 407 Gene3D G3DSA:1.20.1250.20 214 406 5.3E-55 T 13-10-2018 HCD_08530 3ebab8feb0ab8a55952bf8cf6ea78bcb 407 TIGRFAM TIGR01272 gluP: glucose/galactose transporter WARNING 90 396 2.8E-81 T 13-10-2018 IPR005964 Bacterial glucose/galactose transporter GO:0005354|GO:0005355|GO:0015757|GO:0016021|GO:1904659 HCD_08530 3ebab8feb0ab8a55952bf8cf6ea78bcb 407 Gene3D G3DSA:1.20.1250.20 6 213 1.5E-48 T 13-10-2018 HCD_04055 0df4dd7fcd20700d382283a9e5d1d7d0 93 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.7E-21 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04055 0df4dd7fcd20700d382283a9e5d1d7d0 93 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.7E-21 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04055 0df4dd7fcd20700d382283a9e5d1d7d0 93 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.7E-21 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04055 0df4dd7fcd20700d382283a9e5d1d7d0 93 Gene3D G3DSA:3.30.860.10 1 91 4.2E-37 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04055 0df4dd7fcd20700d382283a9e5d1d7d0 93 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 13-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04055 0df4dd7fcd20700d382283a9e5d1d7d0 93 SUPERFAMILY SSF54570 3 84 3.66E-34 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04055 0df4dd7fcd20700d382283a9e5d1d7d0 93 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.269 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04055 0df4dd7fcd20700d382283a9e5d1d7d0 93 Pfam PF00203 Ribosomal protein S19 3 83 7.2E-34 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04055 0df4dd7fcd20700d382283a9e5d1d7d0 93 PIRSF PIRSF002144 1 93 1.3E-30 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04055 0df4dd7fcd20700d382283a9e5d1d7d0 93 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 89 1.8E-44 T 13-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 HCD_06835 9a1a928da239abd65b680014041a7c23 381 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 313 337 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_06835 9a1a928da239abd65b680014041a7c23 381 Pfam PF01098 Cell cycle protein 3 353 1.0E-104 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_06835 9a1a928da239abd65b680014041a7c23 381 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 6 358 24.797 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_03070 cef708edb401945d8230267ae2afc579 391 Gene3D G3DSA:2.40.340.10 320 380 1.3E-90 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_03070 cef708edb401945d8230267ae2afc579 391 SMART SM00852 175 309 3.1E-24 T 13-10-2018 IPR001453 MoaB/Mog domain HCD_03070 cef708edb401945d8230267ae2afc579 391 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 171 305 1.6E-25 T 13-10-2018 IPR001453 MoaB/Mog domain HCD_03070 cef708edb401945d8230267ae2afc579 391 SUPERFAMILY SSF63882 1 171 1.83E-43 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_03070 cef708edb401945d8230267ae2afc579 391 Gene3D G3DSA:2.170.190.11 45 136 1.3E-90 T 13-10-2018 HCD_03070 cef708edb401945d8230267ae2afc579 391 Gene3D G3DSA:3.40.980.10 170 319 1.3E-90 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily HCD_03070 cef708edb401945d8230267ae2afc579 391 Pfam PF03453 MoeA N-terminal region (domain I and II) 2 162 2.0E-33 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_03070 cef708edb401945d8230267ae2afc579 391 SUPERFAMILY SSF53218 170 310 3.8E-27 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily HCD_03070 cef708edb401945d8230267ae2afc579 391 Pfam PF00994 Probable molybdopterin binding domain 178 308 6.8E-16 T 13-10-2018 IPR001453 MoaB/Mog domain HCD_03070 cef708edb401945d8230267ae2afc579 391 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 244 278 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 HCD_03070 cef708edb401945d8230267ae2afc579 391 Gene3D G3DSA:3.90.105.10 22 169 1.3E-90 T 13-10-2018 HCD_05965 4bca3d02130f134d6acf88d9eab59599 464 PRINTS PR00987 Glutamyl-tRNA synthetase signature 180 190 3.0E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 HCD_05965 4bca3d02130f134d6acf88d9eab59599 464 PRINTS PR00987 Glutamyl-tRNA synthetase signature 36 49 3.0E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 HCD_05965 4bca3d02130f134d6acf88d9eab59599 464 PRINTS PR00987 Glutamyl-tRNA synthetase signature 21 32 3.0E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 HCD_05965 4bca3d02130f134d6acf88d9eab59599 464 PRINTS PR00987 Glutamyl-tRNA synthetase signature 7 19 3.0E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 HCD_05965 4bca3d02130f134d6acf88d9eab59599 464 PRINTS PR00987 Glutamyl-tRNA synthetase signature 196 204 3.0E-26 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 HCD_05965 4bca3d02130f134d6acf88d9eab59599 464 Gene3D G3DSA:1.10.10.350 365 464 1.2E-18 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 HCD_05965 4bca3d02130f134d6acf88d9eab59599 464 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 4 306 5.8E-101 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 HCD_05965 4bca3d02130f134d6acf88d9eab59599 464 SUPERFAMILY SSF52374 4 299 7.51E-106 T 13-10-2018 HCD_05965 4bca3d02130f134d6acf88d9eab59599 464 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 3 461 30.27 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 HCD_05965 4bca3d02130f134d6acf88d9eab59599 464 Gene3D G3DSA:3.40.50.620 3 315 5.0E-128 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_05965 4bca3d02130f134d6acf88d9eab59599 464 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 4 462 4.2E-191 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 HCD_05965 4bca3d02130f134d6acf88d9eab59599 464 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 10 21 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_05965 4bca3d02130f134d6acf88d9eab59599 464 SUPERFAMILY SSF48163 301 461 3.14E-31 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 HCD_01880 f9a3f337290dcd3414fe59ba78947430 183 Gene3D G3DSA:2.40.50.140 1 65 1.7E-13 T 13-10-2018 HCD_01880 f9a3f337290dcd3414fe59ba78947430 183 Pfam PF14520 Helix-hairpin-helix domain 71 127 7.9E-14 T 13-10-2018 HCD_01880 f9a3f337290dcd3414fe59ba78947430 183 SUPERFAMILY SSF46929 138 181 2.09E-7 T 13-10-2018 IPR036267 RuvA, C-terminal domain superfamily HCD_01880 f9a3f337290dcd3414fe59ba78947430 183 Gene3D G3DSA:1.10.150.20 66 136 1.7E-21 T 13-10-2018 HCD_01880 f9a3f337290dcd3414fe59ba78947430 183 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 182 27.682 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 HCD_01880 f9a3f337290dcd3414fe59ba78947430 183 Gene3D G3DSA:1.10.8.10 137 181 5.5E-8 T 13-10-2018 HCD_01880 f9a3f337290dcd3414fe59ba78947430 183 SMART SM00278 72 91 0.61 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 HCD_01880 f9a3f337290dcd3414fe59ba78947430 183 SMART SM00278 107 126 0.22 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 HCD_01880 f9a3f337290dcd3414fe59ba78947430 183 SUPERFAMILY SSF47781 64 130 2.45E-18 T 13-10-2018 IPR010994 RuvA domain 2-like HCD_01880 f9a3f337290dcd3414fe59ba78947430 183 SUPERFAMILY SSF50249 1 62 1.41E-12 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_01880 f9a3f337290dcd3414fe59ba78947430 183 Pfam PF07499 RuvA, C-terminal domain 139 182 2.5E-12 T 13-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 HCD_01880 f9a3f337290dcd3414fe59ba78947430 183 Pfam PF01330 RuvA N terminal domain 1 61 4.4E-13 T 13-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 HCD_01880 f9a3f337290dcd3414fe59ba78947430 183 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 181 4.0E-59 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 HCD_04415 8c3bd5e83238e3dc2738e5f1eab12d1d 316 SUPERFAMILY SSF51569 4 315 6.47E-55 T 13-10-2018 HCD_04415 8c3bd5e83238e3dc2738e5f1eab12d1d 316 Hamap MF_00493 Transaldolase [tal]. 1 316 74.652 T 13-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 HCD_04415 8c3bd5e83238e3dc2738e5f1eab12d1d 316 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 6 315 1.3E-74 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 HCD_04415 8c3bd5e83238e3dc2738e5f1eab12d1d 316 PIRSF PIRSF036915 2 316 3.9E-55 T 13-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 HCD_04415 8c3bd5e83238e3dc2738e5f1eab12d1d 316 Gene3D G3DSA:3.20.20.70 1 316 1.2E-83 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_04415 8c3bd5e83238e3dc2738e5f1eab12d1d 316 TIGRFAM TIGR00876 tal_mycobact: transaldolase 2 315 3.2E-142 T 13-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 HCD_04415 8c3bd5e83238e3dc2738e5f1eab12d1d 316 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 HCD_00180 ddc045341d39a4f459d68f9b74ba285a 791 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 176 375 2.1E-55 T 13-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 HCD_00180 ddc045341d39a4f459d68f9b74ba285a 791 SUPERFAMILY SSF52540 381 708 7.31E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_00180 ddc045341d39a4f459d68f9b74ba285a 791 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 21 787 2.1E-217 T 13-10-2018 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 HCD_00180 ddc045341d39a4f459d68f9b74ba285a 791 Pfam PF01580 FtsK/SpoIIIE family 401 466 5.3E-7 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 HCD_04975 a2c0dee96130af007e3a8ee9d446bf67 251 Pfam PF00849 RNA pseudouridylate synthase 63 207 1.1E-16 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_04975 a2c0dee96130af007e3a8ee9d446bf67 251 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 100 114 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 HCD_04975 a2c0dee96130af007e3a8ee9d446bf67 251 Gene3D G3DSA:3.30.70.1560 124 226 1.7E-38 T 13-10-2018 HCD_04975 a2c0dee96130af007e3a8ee9d446bf67 251 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 67 237 6.5E-52 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 HCD_04975 a2c0dee96130af007e3a8ee9d446bf67 251 SMART SM00363 1 57 1.1E-12 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04975 a2c0dee96130af007e3a8ee9d446bf67 251 SUPERFAMILY SSF55120 62 248 3.96E-30 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_04975 a2c0dee96130af007e3a8ee9d446bf67 251 Gene3D G3DSA:3.30.70.580 65 234 1.7E-38 T 13-10-2018 HCD_04975 a2c0dee96130af007e3a8ee9d446bf67 251 Gene3D G3DSA:3.10.290.10 1 56 5.8E-13 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 HCD_04975 a2c0dee96130af007e3a8ee9d446bf67 251 Pfam PF01479 S4 domain 1 46 2.1E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04975 a2c0dee96130af007e3a8ee9d446bf67 251 SUPERFAMILY SSF55174 1 55 2.94E-10 T 13-10-2018 HCD_01085 9b76008303d94552dca33a59f27e7aa3 414 Pfam PF04552 Sigma-54, DNA binding domain 254 408 1.4E-51 T 13-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding HCD_01085 9b76008303d94552dca33a59f27e7aa3 414 Gene3D G3DSA:1.10.10.1330 76 208 4.3E-21 T 13-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily HCD_01085 9b76008303d94552dca33a59f27e7aa3 414 Pfam PF04963 Sigma-54 factor, core binding domain 69 247 1.1E-30 T 13-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 HCD_01085 9b76008303d94552dca33a59f27e7aa3 414 Gene3D G3DSA:1.10.10.60 348 407 9.9E-19 T 13-10-2018 HCD_01085 9b76008303d94552dca33a59f27e7aa3 414 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 407 4.2E-108 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 HCD_01085 9b76008303d94552dca33a59f27e7aa3 414 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 388 395 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 HCD_01085 9b76008303d94552dca33a59f27e7aa3 414 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 299 318 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 HCD_01085 9b76008303d94552dca33a59f27e7aa3 414 PIRSF PIRSF000774 1 410 2.0E-67 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 HCD_01085 9b76008303d94552dca33a59f27e7aa3 414 PRINTS PR00045 Sigma-54 factor signature 327 338 8.4E-15 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 HCD_01085 9b76008303d94552dca33a59f27e7aa3 414 PRINTS PR00045 Sigma-54 factor signature 311 323 8.4E-15 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 HCD_01085 9b76008303d94552dca33a59f27e7aa3 414 PRINTS PR00045 Sigma-54 factor signature 143 160 8.4E-15 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 HCD_01085 9b76008303d94552dca33a59f27e7aa3 414 PRINTS PR00045 Sigma-54 factor signature 383 401 8.4E-15 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 HCD_01085 9b76008303d94552dca33a59f27e7aa3 414 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 4 48 3.3E-7 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 HCD_01050 74208bc6f17ffcfd33e45e1c59c2bd62 277 Pfam PF01856 Helicobacter outer membrane protein 89 277 1.1E-49 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01050 74208bc6f17ffcfd33e45e1c59c2bd62 277 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 134 155 2.8E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01050 74208bc6f17ffcfd33e45e1c59c2bd62 277 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 110 130 2.8E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01050 74208bc6f17ffcfd33e45e1c59c2bd62 277 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 233 254 2.8E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01050 74208bc6f17ffcfd33e45e1c59c2bd62 277 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 78 99 2.8E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06035 6ebbaff37131ae0983a8d4ed5eeb14e2 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 78 96 3.5E-31 T 13-10-2018 IPR002220 DapA-like GO:0016829 HCD_06035 6ebbaff37131ae0983a8d4ed5eeb14e2 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 135 152 3.5E-31 T 13-10-2018 IPR002220 DapA-like GO:0016829 HCD_06035 6ebbaff37131ae0983a8d4ed5eeb14e2 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 3.5E-31 T 13-10-2018 IPR002220 DapA-like GO:0016829 HCD_06035 6ebbaff37131ae0983a8d4ed5eeb14e2 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 110 126 3.5E-31 T 13-10-2018 IPR002220 DapA-like GO:0016829 HCD_06035 6ebbaff37131ae0983a8d4ed5eeb14e2 300 Gene3D G3DSA:3.20.20.70 4 299 3.7E-102 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_06035 6ebbaff37131ae0983a8d4ed5eeb14e2 300 Pfam PF00701 Dihydrodipicolinate synthetase family 6 295 7.4E-81 T 13-10-2018 IPR002220 DapA-like GO:0016829 HCD_06035 6ebbaff37131ae0983a8d4ed5eeb14e2 300 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 140 171 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 HCD_06035 6ebbaff37131ae0983a8d4ed5eeb14e2 300 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 295 58.257 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_06035 6ebbaff37131ae0983a8d4ed5eeb14e2 300 PIRSF PIRSF001365 3 297 1.2E-77 T 13-10-2018 IPR002220 DapA-like GO:0016829 HCD_06035 6ebbaff37131ae0983a8d4ed5eeb14e2 300 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 5 296 1.2E-117 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_06035 6ebbaff37131ae0983a8d4ed5eeb14e2 300 SMART SM01130 2 297 1.2E-113 T 13-10-2018 IPR002220 DapA-like GO:0016829 HCD_06035 6ebbaff37131ae0983a8d4ed5eeb14e2 300 SUPERFAMILY SSF51569 7 296 7.95E-87 T 13-10-2018 HCD_01315 646c3c798737dc6f2aa5e37cd79be8e1 329 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 24 327 25.476 T 13-10-2018 IPR003770 Endolytic murein transglycosylase HCD_01315 646c3c798737dc6f2aa5e37cd79be8e1 329 Pfam PF02618 YceG-like family 45 323 4.0E-54 T 13-10-2018 IPR003770 Endolytic murein transglycosylase HCD_01315 646c3c798737dc6f2aa5e37cd79be8e1 329 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 95 321 1.7E-37 T 13-10-2018 IPR003770 Endolytic murein transglycosylase HCD_05090 adaf7d50c8cb8c7b2db5d39356cf5584 111 Gene3D G3DSA:3.40.91.50 1 109 1.6E-11 T 13-10-2018 HCD_05090 adaf7d50c8cb8c7b2db5d39356cf5584 111 Pfam PF09491 AlwI restriction endonuclease 1 65 4.4E-13 T 13-10-2018 IPR018573 Restriction endonuclease, type II, AlwI HCD_03810 6d65578278189ac2d40dbc2bcc4566a8 307 Gene3D G3DSA:3.40.50.1820 1 302 7.4E-46 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold HCD_03810 6d65578278189ac2d40dbc2bcc4566a8 307 SUPERFAMILY SSF53474 8 300 3.73E-31 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold HCD_03810 6d65578278189ac2d40dbc2bcc4566a8 307 Pfam PF12146 Serine aminopeptidase, S33 30 286 2.2E-43 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 HCD_06475 f1656702ae9a1f1fb75e2ec24afecd8a 210 SUPERFAMILY SSF55469 11 209 1.7E-45 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 HCD_06475 f1656702ae9a1f1fb75e2ec24afecd8a 210 Gene3D G3DSA:3.40.109.10 4 210 3.7E-46 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 HCD_06475 f1656702ae9a1f1fb75e2ec24afecd8a 210 Pfam PF00881 Nitroreductase family 15 190 2.2E-24 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 HCD_01140 9f6cde9b7029ef6515a25d1413fe09d5 330 Gene3D G3DSA:1.10.1200.80 248 318 3.5E-8 T 13-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 HCD_01140 9f6cde9b7029ef6515a25d1413fe09d5 330 SUPERFAMILY SSF51395 11 311 7.2E-66 T 13-10-2018 HCD_01140 9f6cde9b7029ef6515a25d1413fe09d5 330 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 13-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 HCD_01140 9f6cde9b7029ef6515a25d1413fe09d5 330 Pfam PF01207 Dihydrouridine synthase (Dus) 13 310 5.9E-65 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 HCD_01140 9f6cde9b7029ef6515a25d1413fe09d5 330 PIRSF PIRSF006621 3 321 1.8E-76 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 HCD_01140 9f6cde9b7029ef6515a25d1413fe09d5 330 Gene3D G3DSA:3.20.20.70 7 245 8.0E-68 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_01865 44a73abd8ea55bf6eee7bd696592959c 1193 SUPERFAMILY SSF103515 895 1193 2.09E-20 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily HCD_01865 44a73abd8ea55bf6eee7bd696592959c 1193 Pfam PF02691 Vacuolating cyotoxin 35 242 1.3E-34 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01865 44a73abd8ea55bf6eee7bd696592959c 1193 Pfam PF02691 Vacuolating cyotoxin 277 905 2.1E-189 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01865 44a73abd8ea55bf6eee7bd696592959c 1193 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 91 116 1.4E-28 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01865 44a73abd8ea55bf6eee7bd696592959c 1193 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 486 511 1.4E-28 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01865 44a73abd8ea55bf6eee7bd696592959c 1193 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 863 883 1.4E-28 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01865 44a73abd8ea55bf6eee7bd696592959c 1193 PRINTS PR01656 Helicobacter pylori vacuolating cytotoxin signature 413 435 1.4E-28 T 13-10-2018 IPR003842 Vacuolating cytotoxin GO:0005576|GO:0009405 HCD_01865 44a73abd8ea55bf6eee7bd696592959c 1193 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 795 1193 1.1E-10 T 13-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 HCD_01865 44a73abd8ea55bf6eee7bd696592959c 1193 SMART SM00869 924 1181 4.7E-11 T 13-10-2018 IPR005546 Autotransporter beta-domain HCD_01865 44a73abd8ea55bf6eee7bd696592959c 1193 Gene3D G3DSA:2.40.128.130 860 1193 5.7E-22 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily HCD_03495 bf801147d2fbfd4fa9c9fc8b709328fc 313 Gene3D G3DSA:3.40.50.720 99 286 1.9E-95 T 13-10-2018 HCD_03495 bf801147d2fbfd4fa9c9fc8b709328fc 313 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 287 1.4E-45 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 HCD_03495 bf801147d2fbfd4fa9c9fc8b709328fc 313 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 17 109 2.2E-22 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 HCD_03495 bf801147d2fbfd4fa9c9fc8b709328fc 313 Gene3D G3DSA:3.40.50.720 20 311 1.9E-95 T 13-10-2018 HCD_03495 bf801147d2fbfd4fa9c9fc8b709328fc 313 SUPERFAMILY SSF51735 103 288 6.21E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_03495 bf801147d2fbfd4fa9c9fc8b709328fc 313 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 224 240 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site HCD_03495 bf801147d2fbfd4fa9c9fc8b709328fc 313 SUPERFAMILY SSF52283 6 129 3.02E-25 T 13-10-2018 HCD_03040 7e022930f84b70f776cabed1e3c208a8 336 TIGRFAM TIGR03586 PseI: pseudaminic acid synthase 5 329 2.3E-146 T 13-10-2018 IPR020030 Pseudaminic acid biosynthesis, PseI KEGG: 00520+2.5.1.97|MetaCyc: PWY-6143 HCD_03040 7e022930f84b70f776cabed1e3c208a8 336 SUPERFAMILY SSF51269 272 335 5.65E-18 T 13-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 HCD_03040 7e022930f84b70f776cabed1e3c208a8 336 Gene3D G3DSA:3.90.1210.10 283 335 9.9E-22 T 13-10-2018 HCD_03040 7e022930f84b70f776cabed1e3c208a8 336 SMART SM00858 277 335 1.7E-7 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 HCD_03040 7e022930f84b70f776cabed1e3c208a8 336 SUPERFAMILY SSF51569 5 287 2.69E-78 T 13-10-2018 HCD_03040 7e022930f84b70f776cabed1e3c208a8 336 Pfam PF08666 SAF domain 278 335 1.9E-10 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 HCD_03040 7e022930f84b70f776cabed1e3c208a8 336 Gene3D G3DSA:3.20.20.70 3 282 2.4E-89 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_03040 7e022930f84b70f776cabed1e3c208a8 336 Pfam PF03102 NeuB family 26 261 2.0E-81 T 13-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 HCD_06745 e90f1ed8e6af02f62b5ed30f451110a5 205 Pfam PF03167 Uracil DNA glycosylase superfamily 58 193 1.3E-7 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 HCD_06745 e90f1ed8e6af02f62b5ed30f451110a5 205 SUPERFAMILY SSF52141 36 204 1.18E-13 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 HCD_06745 e90f1ed8e6af02f62b5ed30f451110a5 205 Gene3D G3DSA:3.40.470.10 34 203 8.1E-13 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 HCD_02930 e2b090de75aaa8c727890a4d5ac325d6 156 Pfam PF06518 Protein of unknown function (DUF1104) 41 130 1.3E-21 T 13-10-2018 IPR009488 Protein of unknown function DUF1104 HCD_02930 e2b090de75aaa8c727890a4d5ac325d6 156 Gene3D G3DSA:1.20.120.1430 28 132 1.8E-24 T 13-10-2018 HCD_07830 d32c48187f7db2ca711b41dc3481076f 257 Gene3D G3DSA:3.40.50.720 2 158 1.5E-20 T 13-10-2018 HCD_07830 d32c48187f7db2ca711b41dc3481076f 257 SUPERFAMILY SSF51735 5 133 3.26E-7 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_07830 d32c48187f7db2ca711b41dc3481076f 257 Gene3D G3DSA:1.10.3730.10 159 257 1.2E-23 T 13-10-2018 HCD_07830 d32c48187f7db2ca711b41dc3481076f 257 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 2 255 18.219 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 HCD_07830 d32c48187f7db2ca711b41dc3481076f 257 SUPERFAMILY SSF48179 156 256 1.09E-21 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 HCD_07830 d32c48187f7db2ca711b41dc3481076f 257 PIRSF PIRSF000193 1 257 6.3E-66 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 HCD_07830 d32c48187f7db2ca711b41dc3481076f 257 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 4 256 4.0E-68 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 HCD_07830 d32c48187f7db2ca711b41dc3481076f 257 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 4 94 1.0E-12 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal HCD_07830 d32c48187f7db2ca711b41dc3481076f 257 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 156 256 1.8E-26 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 HCD_07830 d32c48187f7db2ca711b41dc3481076f 257 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 214 236 - T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 HCD_06875 dd79a10aa0f793100ecd2006a69f5d71 437 Pfam PF13726 Na+-H+ antiporter family 10 96 4.1E-25 T 13-10-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal HCD_06875 dd79a10aa0f793100ecd2006a69f5d71 437 Pfam PF03553 Na+/H+ antiporter family 150 432 3.5E-64 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 HCD_05270 db75ffa4a0b961be19bb738eb604dfad 365 TIGRFAM TIGR00033 aroC: chorismate synthase 8 350 1.3E-114 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 HCD_05270 db75ffa4a0b961be19bb738eb604dfad 365 Pfam PF01264 Chorismate synthase 8 348 9.6E-121 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 HCD_05270 db75ffa4a0b961be19bb738eb604dfad 365 Gene3D G3DSA:3.60.150.10 1 365 3.8E-148 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 HCD_05270 db75ffa4a0b961be19bb738eb604dfad 365 ProSitePatterns PS00788 Chorismate synthase signature 2. 122 138 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 HCD_05270 db75ffa4a0b961be19bb738eb604dfad 365 Hamap MF_00300 Chorismate synthase [aroC]. 8 355 35.037 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 HCD_05270 db75ffa4a0b961be19bb738eb604dfad 365 PIRSF PIRSF001456 1 364 2.1E-127 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 HCD_05270 db75ffa4a0b961be19bb738eb604dfad 365 SUPERFAMILY SSF103263 2 354 6.28E-131 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 HCD_05270 db75ffa4a0b961be19bb738eb604dfad 365 ProSitePatterns PS00789 Chorismate synthase signature 3. 322 338 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 HCD_05270 db75ffa4a0b961be19bb738eb604dfad 365 ProSitePatterns PS00787 Chorismate synthase signature 1. 14 29 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 HCD_06980 e151002cf8fc609801ad1d0aca3fef49 433 Gene3D G3DSA:3.40.630.40 197 433 3.5E-64 T 13-10-2018 HCD_06980 e151002cf8fc609801ad1d0aca3fef49 433 SMART SM00646 271 426 1.2E-49 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 HCD_06980 e151002cf8fc609801ad1d0aca3fef49 433 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 212 426 1.4E-42 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 HCD_06980 e151002cf8fc609801ad1d0aca3fef49 433 SUPERFAMILY SSF53187 210 430 6.91E-45 T 13-10-2018 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 228 244 - T 13-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 5 209 1.6E-71 T 13-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 Gene3D G3DSA:3.40.190.10 6 206 1.7E-73 T 13-10-2018 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 Gene3D G3DSA:3.40.190.10 100 200 1.7E-73 T 13-10-2018 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 223 292 2.6E-19 T 13-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 SUPERFAMILY SSF54782 217 303 1.7E-20 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 PRINTS PR00151 Porphobilinogen deaminase signature 227 244 3.9E-45 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 PRINTS PR00151 Porphobilinogen deaminase signature 73 92 3.9E-45 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 PRINTS PR00151 Porphobilinogen deaminase signature 121 138 3.9E-45 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 PRINTS PR00151 Porphobilinogen deaminase signature 42 62 3.9E-45 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 PRINTS PR00151 Porphobilinogen deaminase signature 140 157 3.9E-45 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 Gene3D G3DSA:3.30.160.40 218 303 7.2E-21 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 293 9.7E-109 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 PIRSF PIRSF001438 1 305 6.8E-109 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 3 294 35.05 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 HCD_06205 6f9bbabbd9b945b8320b8a7b519fe50d 306 SUPERFAMILY SSF53850 2 211 3.0E-71 T 13-10-2018 HCD_05255 4cd9981555255e639902ac363ae4216b 433 Pfam PF13183 4Fe-4S dicluster domain 12 77 4.6E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_05255 4cd9981555255e639902ac363ae4216b 433 Pfam PF02754 Cysteine-rich domain 179 262 1.2E-16 T 13-10-2018 IPR004017 Cysteine-rich domain HCD_05255 4cd9981555255e639902ac363ae4216b 433 Pfam PF02754 Cysteine-rich domain 318 401 7.3E-11 T 13-10-2018 IPR004017 Cysteine-rich domain HCD_05255 4cd9981555255e639902ac363ae4216b 433 PIRSF PIRSF000139 1 432 1.5E-132 T 13-10-2018 HCD_05255 4cd9981555255e639902ac363ae4216b 433 Gene3D G3DSA:1.10.1060.10 2 96 5.2E-8 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 HCD_05255 4cd9981555255e639902ac363ae4216b 433 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 64 75 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_05255 4cd9981555255e639902ac363ae4216b 433 SUPERFAMILY SSF46548 11 93 5.23E-17 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 HCD_02045 4e1ca172047bd467ace38b91e511bc89 659 Gene3D G3DSA:3.40.50.300 36 318 1.3E-10 T 13-10-2018 HCD_02045 4e1ca172047bd467ace38b91e511bc89 659 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 72 522 1.1E-10 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 HCD_02045 4e1ca172047bd467ace38b91e511bc89 659 Gene3D G3DSA:3.40.50.300 337 537 3.5E-12 T 13-10-2018 HCD_02045 4e1ca172047bd467ace38b91e511bc89 659 SUPERFAMILY SSF52540 69 523 1.39E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01390 8032dcb6d36db9362770a711740ce6d1 144 SUPERFAMILY SSF89623 5 143 1.83E-48 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 HCD_01390 8032dcb6d36db9362770a711740ce6d1 144 PIRSF PIRSF005384 5 144 1.0E-47 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 HCD_01390 8032dcb6d36db9362770a711740ce6d1 144 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 7 143 4.5E-66 T 13-10-2018 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 HCD_01390 8032dcb6d36db9362770a711740ce6d1 144 Pfam PF02502 Ribose/Galactose Isomerase 7 142 1.2E-48 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 HCD_01390 8032dcb6d36db9362770a711740ce6d1 144 Gene3D G3DSA:3.40.1400.10 1 144 3.6E-52 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 HCD_01390 8032dcb6d36db9362770a711740ce6d1 144 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 7 143 1.3E-58 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 HCD_01465 32667f061ee025a35f1192cea38ad03c 412 Gene3D G3DSA:3.40.47.10 1 258 2.2E-79 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 HCD_01465 32667f061ee025a35f1192cea38ad03c 412 SMART SM00825 Beta-ketoacyl synthase 4 412 2.4E-11 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain HCD_01465 32667f061ee025a35f1192cea38ad03c 412 Gene3D G3DSA:3.40.47.10 260 401 6.7E-49 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 HCD_01465 32667f061ee025a35f1192cea38ad03c 412 SUPERFAMILY SSF53901 2 255 1.49E-66 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 HCD_01465 32667f061ee025a35f1192cea38ad03c 412 PIRSF PIRSF000447 1 412 2.3E-160 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 HCD_01465 32667f061ee025a35f1192cea38ad03c 412 SUPERFAMILY SSF53901 218 411 5.98E-67 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 HCD_01465 32667f061ee025a35f1192cea38ad03c 412 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 258 369 1.0E-33 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal HCD_01465 32667f061ee025a35f1192cea38ad03c 412 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 410 9.1E-177 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 HCD_01465 32667f061ee025a35f1192cea38ad03c 412 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 250 9.8E-52 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal HCD_01555 772169b9f3b8a790e6b1638846bb14ef 133 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 2 113 8.4E-35 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 HCD_01555 772169b9f3b8a790e6b1638846bb14ef 133 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 4 21 - T 13-10-2018 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 HCD_01555 772169b9f3b8a790e6b1638846bb14ef 133 SUPERFAMILY SSF54637 1 130 2.7E-24 T 13-10-2018 IPR029069 HotDog domain superfamily HCD_01555 772169b9f3b8a790e6b1638846bb14ef 133 Gene3D G3DSA:3.10.129.10 1 133 6.8E-34 T 13-10-2018 HCD_01555 772169b9f3b8a790e6b1638846bb14ef 133 Pfam PF03061 Thioesterase superfamily 14 92 2.1E-13 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 HCD_00370 febce9a923e4ba88255776855bf0ff43 597 Gene3D G3DSA:3.10.105.10 305 567 1.2E-228 T 13-10-2018 HCD_00370 febce9a923e4ba88255776855bf0ff43 597 SUPERFAMILY SSF53850 43 589 1.09E-113 T 13-10-2018 HCD_00370 febce9a923e4ba88255776855bf0ff43 597 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 93 505 6.7E-78 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain HCD_00370 febce9a923e4ba88255776855bf0ff43 597 PIRSF PIRSF002741 6 592 3.0E-96 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 HCD_00370 febce9a923e4ba88255776855bf0ff43 597 Gene3D G3DSA:3.40.190.10 26 587 1.2E-228 T 13-10-2018 HCD_06815 661c51b9ce948c02a4ab5063f748c36e 241 Pfam PF12697 Alpha/beta hydrolase family 29 118 1.8E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 HCD_06815 661c51b9ce948c02a4ab5063f748c36e 241 Gene3D G3DSA:3.40.50.1820 7 239 5.5E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold HCD_06815 661c51b9ce948c02a4ab5063f748c36e 241 SUPERFAMILY SSF53474 13 235 6.2E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold HCD_03975 14dca10fb73c9123cbb6567e3577bfb1 253 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 252 8.2E-101 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 HCD_03975 14dca10fb73c9123cbb6567e3577bfb1 253 Pfam PF00557 Metallopeptidase family M24 13 242 3.4E-43 T 13-10-2018 IPR000994 Peptidase M24 HCD_03975 14dca10fb73c9123cbb6567e3577bfb1 253 Gene3D G3DSA:3.90.230.10 1 253 2.3E-84 T 13-10-2018 HCD_03975 14dca10fb73c9123cbb6567e3577bfb1 253 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 166 184 - T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 HCD_03975 14dca10fb73c9123cbb6567e3577bfb1 253 PRINTS PR00599 Methionine aminopeptidase-1 signature 90 106 2.1E-21 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 HCD_03975 14dca10fb73c9123cbb6567e3577bfb1 253 PRINTS PR00599 Methionine aminopeptidase-1 signature 195 207 2.1E-21 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 HCD_03975 14dca10fb73c9123cbb6567e3577bfb1 253 PRINTS PR00599 Methionine aminopeptidase-1 signature 68 81 2.1E-21 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 HCD_03975 14dca10fb73c9123cbb6567e3577bfb1 253 PRINTS PR00599 Methionine aminopeptidase-1 signature 160 172 2.1E-21 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 HCD_03975 14dca10fb73c9123cbb6567e3577bfb1 253 Hamap MF_01974 Methionine aminopeptidase [map]. 3 253 36.85 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 HCD_03975 14dca10fb73c9123cbb6567e3577bfb1 253 SUPERFAMILY SSF55920 3 252 4.32E-72 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 Pfam PF06628 Catalase-related immune-responsive 422 482 7.9E-22 T 13-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 335 343 - T 13-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 Gene3D G3DSA:2.40.180.10 1 499 9.7E-244 T 13-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 PRINTS PR00067 Catalase signature 125 143 3.2E-71 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 PRINTS PR00067 Catalase signature 322 348 3.2E-71 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 PRINTS PR00067 Catalase signature 106 123 3.2E-71 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 PRINTS PR00067 Catalase signature 290 317 3.2E-71 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 PRINTS PR00067 Catalase signature 22 45 3.2E-71 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 PRINTS PR00067 Catalase signature 85 103 3.2E-71 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 SMART SM01060 9 392 6.0E-286 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 Pfam PF00199 Catalase 10 388 9.1E-193 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 PIRSF PIRSF038928 1 488 1.2E-225 T 13-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 SUPERFAMILY SSF56634 4 486 5.89E-211 T 13-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 HCD_01845 b3002fae47553e427f88ee4c83095ff0 499 ProSitePatterns PS00438 Catalase proximal active site signature. 45 61 - T 13-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 HCD_01710 39edaf6ac7a9b1f67975be47a8204d84 259 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 2 248 5.1E-95 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01710 39edaf6ac7a9b1f67975be47a8204d84 259 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 4 253 27.34 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01710 39edaf6ac7a9b1f67975be47a8204d84 259 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 111 125 4.2E-38 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01710 39edaf6ac7a9b1f67975be47a8204d84 259 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 10 17 4.2E-38 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01710 39edaf6ac7a9b1f67975be47a8204d84 259 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 80 97 4.2E-38 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01710 39edaf6ac7a9b1f67975be47a8204d84 259 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 154 171 4.2E-38 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01710 39edaf6ac7a9b1f67975be47a8204d84 259 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 54 62 4.2E-38 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01710 39edaf6ac7a9b1f67975be47a8204d84 259 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 23 44 4.2E-38 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01710 39edaf6ac7a9b1f67975be47a8204d84 259 Pfam PF02110 Hydroxyethylthiazole kinase family 2 247 8.8E-93 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01710 39edaf6ac7a9b1f67975be47a8204d84 259 Gene3D G3DSA:3.40.1190.20 1 257 1.2E-76 T 13-10-2018 IPR029056 Ribokinase-like HCD_01710 39edaf6ac7a9b1f67975be47a8204d84 259 PIRSF PIRSF000513 1 258 3.0E-89 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_01710 39edaf6ac7a9b1f67975be47a8204d84 259 SUPERFAMILY SSF53613 2 247 1.96E-46 T 13-10-2018 IPR029056 Ribokinase-like HCD_02060 98b5c8f05677cc6668f041477ae51569 596 Gene3D G3DSA:3.40.50.300 1 184 2.2E-69 T 13-10-2018 HCD_02060 98b5c8f05677cc6668f041477ae51569 596 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site HCD_02060 98b5c8f05677cc6668f041477ae51569 596 Pfam PF03144 Elongation factor Tu domain 2 204 275 1.3E-8 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 HCD_02060 98b5c8f05677cc6668f041477ae51569 596 SUPERFAMILY SSF54980 291 370 5.04E-16 T 13-10-2018 IPR035647 EF-G domain III/V-like HCD_02060 98b5c8f05677cc6668f041477ae51569 596 SUPERFAMILY SSF54980 399 494 6.23E-22 T 13-10-2018 IPR035647 EF-G domain III/V-like HCD_02060 98b5c8f05677cc6668f041477ae51569 596 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 173 4.4E-19 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 HCD_02060 98b5c8f05677cc6668f041477ae51569 596 PRINTS PR00315 GTP-binding elongation factor signature 49 57 1.1E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02060 98b5c8f05677cc6668f041477ae51569 596 PRINTS PR00315 GTP-binding elongation factor signature 73 83 1.1E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02060 98b5c8f05677cc6668f041477ae51569 596 PRINTS PR00315 GTP-binding elongation factor signature 6 19 1.1E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02060 98b5c8f05677cc6668f041477ae51569 596 PRINTS PR00315 GTP-binding elongation factor signature 125 134 1.1E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02060 98b5c8f05677cc6668f041477ae51569 596 TIGRFAM TIGR01393 lepA: elongation factor 4 2 596 3.7E-284 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 HCD_02060 98b5c8f05677cc6668f041477ae51569 596 Pfam PF00009 Elongation factor Tu GTP binding domain 2 180 1.5E-52 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 HCD_02060 98b5c8f05677cc6668f041477ae51569 596 Gene3D G3DSA:3.30.70.870 286 367 1.1E-32 T 13-10-2018 HCD_02060 98b5c8f05677cc6668f041477ae51569 596 SUPERFAMILY SSF52540 2 198 2.59E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02060 98b5c8f05677cc6668f041477ae51569 596 SUPERFAMILY SSF50447 165 288 9.66E-27 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily HCD_02060 98b5c8f05677cc6668f041477ae51569 596 Pfam PF06421 GTP-binding protein LepA C-terminus 489 594 5.3E-47 T 13-10-2018 IPR013842 GTP-binding protein LepA, C-terminal HCD_02060 98b5c8f05677cc6668f041477ae51569 596 Hamap MF_00071 Elongation factor 4 [lepA]. 1 596 273.78 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 HCD_02060 98b5c8f05677cc6668f041477ae51569 596 Pfam PF00679 Elongation factor G C-terminus 399 477 5.8E-21 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like HCD_02060 98b5c8f05677cc6668f041477ae51569 596 Gene3D G3DSA:2.40.30.10 185 285 1.2E-25 T 13-10-2018 HCD_02060 98b5c8f05677cc6668f041477ae51569 596 Gene3D G3DSA:3.30.70.2570 480 554 6.8E-29 T 13-10-2018 IPR038363 LepA, C-terminal domain superfamily HCD_02060 98b5c8f05677cc6668f041477ae51569 596 Gene3D G3DSA:3.30.70.3380 368 479 5.1E-40 T 13-10-2018 HCD_04615 2a59e933219c7b4567130284b19d5466 177 SUPERFAMILY SSF53167 15 176 7.46E-19 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 HCD_04615 2a59e933219c7b4567130284b19d5466 177 Gene3D G3DSA:3.40.50.1580 5 176 2.9E-17 T 13-10-2018 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 SUPERFAMILY SSF53697 2 544 1.58E-206 T 13-10-2018 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 493 510 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 Gene3D G3DSA:3.40.50.10490 10 502 3.6E-220 T 13-10-2018 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 41 520 41.673 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 Gene3D G3DSA:1.10.1390.10 503 544 2.9E-17 T 13-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 Pfam PF00342 Phosphoglucose isomerase 47 537 2.1E-208 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 479 493 2.1E-53 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 257 275 2.1E-53 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 461 479 2.1E-53 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 334 355 2.1E-53 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 145 164 2.1E-53 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 493 506 2.1E-53 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 Gene3D G3DSA:3.40.50.10490 93 287 3.6E-220 T 13-10-2018 HCD_08480 226ed1b61fe4b7e361a179a49999816e 548 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 261 274 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_06310 a7130b98e51a01b521846da674dc0147 178 SUPERFAMILY SSF53335 4 159 5.83E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_06310 a7130b98e51a01b521846da674dc0147 178 Gene3D G3DSA:3.40.50.150 3 175 4.3E-44 T 13-10-2018 HCD_06310 a7130b98e51a01b521846da674dc0147 178 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 6 161 8.4E-48 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 HCD_06310 a7130b98e51a01b521846da674dc0147 178 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 1 171 21.746 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 HCD_06310 a7130b98e51a01b521846da674dc0147 178 PIRSF PIRSF003078 1 176 3.2E-43 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 HCD_06310 a7130b98e51a01b521846da674dc0147 178 Pfam PF02527 rRNA small subunit methyltransferase G 3 174 3.0E-55 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 HCD_01370 e17b2d6d13d6c303a03bad60d54092ab 339 Gene3D G3DSA:3.40.50.300 132 309 2.3E-5 T 13-10-2018 HCD_01370 e17b2d6d13d6c303a03bad60d54092ab 339 Pfam PF00581 Rhodanese-like domain 12 125 3.0E-11 T 13-10-2018 IPR001763 Rhodanese-like domain HCD_01370 e17b2d6d13d6c303a03bad60d54092ab 339 SMART SM00450 1 130 2.1E-6 T 13-10-2018 IPR001763 Rhodanese-like domain HCD_01370 e17b2d6d13d6c303a03bad60d54092ab 339 SUPERFAMILY SSF52540 138 276 1.08E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01370 e17b2d6d13d6c303a03bad60d54092ab 339 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 11 312 8.0E-89 T 13-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 HCD_01370 e17b2d6d13d6c303a03bad60d54092ab 339 SUPERFAMILY SSF52821 13 152 3.67E-21 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily HCD_01370 e17b2d6d13d6c303a03bad60d54092ab 339 Gene3D G3DSA:3.40.250.10 3 131 5.4E-36 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily HCD_03225 d3303f39043a9b35917e704d47705999 289 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 1 131 7.5E-17 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 HCD_03225 d3303f39043a9b35917e704d47705999 289 Gene3D G3DSA:1.10.340.30 1 95 7.7E-56 T 13-10-2018 HCD_03225 d3303f39043a9b35917e704d47705999 289 SMART SM00478 1 149 1.3E-48 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 HCD_03225 d3303f39043a9b35917e704d47705999 289 SUPERFAMILY SSF48150 1 168 8.48E-52 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 HCD_03225 d3303f39043a9b35917e704d47705999 289 Pfam PF00633 Helix-hairpin-helix motif 63 91 7.7E-7 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 HCD_03225 d3303f39043a9b35917e704d47705999 289 Gene3D G3DSA:1.10.1670.10 96 167 7.7E-56 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 HCD_00355 a604f36d359221d1f96045667be0fe3c 263 Gene3D G3DSA:3.40.50.10860 6 245 1.9E-84 T 13-10-2018 HCD_00355 a604f36d359221d1f96045667be0fe3c 263 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 8 92 7.0E-23 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 HCD_00355 a604f36d359221d1f96045667be0fe3c 263 SUPERFAMILY SSF53223 4 104 5.01E-24 T 13-10-2018 HCD_00355 a604f36d359221d1f96045667be0fe3c 263 Gene3D G3DSA:3.40.50.720 105 237 1.9E-84 T 13-10-2018 HCD_00355 a604f36d359221d1f96045667be0fe3c 263 SUPERFAMILY SSF51735 105 261 1.05E-22 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_00355 a604f36d359221d1f96045667be0fe3c 263 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 262 1.4E-83 T 13-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 HCD_00355 a604f36d359221d1f96045667be0fe3c 263 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 3 262 26.668 T 13-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 HCD_07780 3a0bc349a94e54d62febea81a7f9044b 893 Gene3D G3DSA:3.90.220.20 470 612 7.8E-25 T 13-10-2018 HCD_07780 3a0bc349a94e54d62febea81a7f9044b 893 Gene3D G3DSA:3.40.50.150 1 365 1.1E-46 T 13-10-2018 HCD_07780 3a0bc349a94e54d62febea81a7f9044b 893 SUPERFAMILY SSF116734 476 647 9.48E-24 T 13-10-2018 HCD_07780 3a0bc349a94e54d62febea81a7f9044b 893 SUPERFAMILY SSF53335 1 327 1.12E-44 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_07780 3a0bc349a94e54d62febea81a7f9044b 893 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 192 216 7.4E-8 T 13-10-2018 HCD_07780 3a0bc349a94e54d62febea81a7f9044b 893 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 151 163 7.4E-8 T 13-10-2018 HCD_07780 3a0bc349a94e54d62febea81a7f9044b 893 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 17 31 7.4E-8 T 13-10-2018 HCD_07780 3a0bc349a94e54d62febea81a7f9044b 893 Pfam PF01420 Type I restriction modification DNA specificity domain 718 850 6.6E-7 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 HCD_07780 3a0bc349a94e54d62febea81a7f9044b 893 Pfam PF01420 Type I restriction modification DNA specificity domain 480 611 1.6E-5 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 HCD_07780 3a0bc349a94e54d62febea81a7f9044b 893 Gene3D G3DSA:3.90.220.20 700 889 7.4E-24 T 13-10-2018 HCD_07780 3a0bc349a94e54d62febea81a7f9044b 893 Pfam PF02384 N-6 DNA Methylase 1 288 4.6E-17 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 HCD_07780 3a0bc349a94e54d62febea81a7f9044b 893 SUPERFAMILY SSF116734 702 870 6.87E-19 T 13-10-2018 HCD_06995 f7cba66968d2ebb6c111bdc8033bf559 771 SUPERFAMILY SSF81301 219 390 1.63E-48 T 13-10-2018 HCD_06995 f7cba66968d2ebb6c111bdc8033bf559 771 Pfam PF04607 Region found in RelA / SpoT proteins 265 374 2.9E-32 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 HCD_06995 f7cba66968d2ebb6c111bdc8033bf559 771 Gene3D G3DSA:3.10.20.30 407 480 1.3E-22 T 13-10-2018 IPR012675 Beta-grasp domain superfamily HCD_06995 f7cba66968d2ebb6c111bdc8033bf559 771 Pfam PF02824 TGS domain 415 473 5.1E-15 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 HCD_06995 f7cba66968d2ebb6c111bdc8033bf559 771 Gene3D G3DSA:3.30.460.10 219 354 1.1E-35 T 13-10-2018 HCD_06995 f7cba66968d2ebb6c111bdc8033bf559 771 SMART SM00954 265 375 2.2E-54 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 HCD_06995 f7cba66968d2ebb6c111bdc8033bf559 771 Pfam PF13328 HD domain 45 202 8.8E-43 T 13-10-2018 IPR003607 HD/PDEase domain HCD_06995 f7cba66968d2ebb6c111bdc8033bf559 771 SUPERFAMILY SSF109604 40 217 9.84E-59 T 13-10-2018 HCD_06995 f7cba66968d2ebb6c111bdc8033bf559 771 Gene3D G3DSA:1.10.3210.10 32 217 8.5E-65 T 13-10-2018 HCD_06995 f7cba66968d2ebb6c111bdc8033bf559 771 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 45 760 5.9E-253 T 13-10-2018 IPR004811 RelA/SpoT family GO:0015969 HCD_06995 f7cba66968d2ebb6c111bdc8033bf559 771 SUPERFAMILY SSF81271 401 473 1.13E-16 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 HCD_06995 f7cba66968d2ebb6c111bdc8033bf559 771 SMART SM00471 60 180 4.9E-10 T 13-10-2018 IPR003607 HD/PDEase domain HCD_01655 a736eed84c3cf88a13a6fc09f8e2088f 423 Gene3D G3DSA:3.40.50.10300 204 422 5.2E-50 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 HCD_01655 a736eed84c3cf88a13a6fc09f8e2088f 423 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 203 393 1.4E-42 T 13-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 HCD_01655 a736eed84c3cf88a13a6fc09f8e2088f 423 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 14 419 6.6E-141 T 13-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 HCD_01655 a736eed84c3cf88a13a6fc09f8e2088f 423 Pfam PF02441 Flavoprotein 17 195 7.1E-37 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 HCD_01655 a736eed84c3cf88a13a6fc09f8e2088f 423 Gene3D G3DSA:3.40.50.1950 10 203 2.6E-52 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 HCD_01655 a736eed84c3cf88a13a6fc09f8e2088f 423 SUPERFAMILY SSF52507 12 194 7.85E-50 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 HCD_01655 a736eed84c3cf88a13a6fc09f8e2088f 423 SUPERFAMILY SSF102645 187 420 1.57E-43 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 HCD_03145 54d931d38eb5163c2eac82532bee545e 164 Gene3D G3DSA:3.40.50.300 1 161 8.1E-47 T 13-10-2018 HCD_03145 54d931d38eb5163c2eac82532bee545e 164 Pfam PF01202 Shikimate kinase 10 158 1.0E-33 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 HCD_03145 54d931d38eb5163c2eac82532bee545e 164 PRINTS PR01100 Shikimate kinase family signature 75 84 1.0E-23 T 13-10-2018 HCD_03145 54d931d38eb5163c2eac82532bee545e 164 PRINTS PR01100 Shikimate kinase family signature 56 64 1.0E-23 T 13-10-2018 HCD_03145 54d931d38eb5163c2eac82532bee545e 164 PRINTS PR01100 Shikimate kinase family signature 92 109 1.0E-23 T 13-10-2018 HCD_03145 54d931d38eb5163c2eac82532bee545e 164 PRINTS PR01100 Shikimate kinase family signature 4 19 1.0E-23 T 13-10-2018 HCD_03145 54d931d38eb5163c2eac82532bee545e 164 PRINTS PR01100 Shikimate kinase family signature 28 41 1.0E-23 T 13-10-2018 HCD_03145 54d931d38eb5163c2eac82532bee545e 164 Hamap MF_00109 Shikimate kinase [aroK]. 1 162 23.104 T 13-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 HCD_03145 54d931d38eb5163c2eac82532bee545e 164 ProSitePatterns PS01128 Shikimate kinase signature. 57 83 - T 13-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 HCD_03145 54d931d38eb5163c2eac82532bee545e 164 SUPERFAMILY SSF52540 4 158 3.02E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_03715 ac5d7d500bb3080712d2b3355549072a 368 Gene3D G3DSA:1.10.530.10 72 230 1.2E-33 T 13-10-2018 HCD_03715 ac5d7d500bb3080712d2b3355549072a 368 Gene3D G3DSA:3.10.350.10 306 364 1.7E-13 T 13-10-2018 IPR036779 LysM domain superfamily HCD_03715 ac5d7d500bb3080712d2b3355549072a 368 Pfam PF01464 Transglycosylase SLT domain 80 190 3.1E-31 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 HCD_03715 ac5d7d500bb3080712d2b3355549072a 368 SUPERFAMILY SSF54106 315 360 2.75E-9 T 13-10-2018 HCD_03715 ac5d7d500bb3080712d2b3355549072a 368 SUPERFAMILY SSF53955 76 221 1.58E-34 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily HCD_03715 ac5d7d500bb3080712d2b3355549072a 368 SMART SM00257 316 359 1.6E-11 T 13-10-2018 IPR018392 LysM domain HCD_03715 ac5d7d500bb3080712d2b3355549072a 368 Pfam PF01476 LysM domain 317 359 3.8E-10 T 13-10-2018 IPR018392 LysM domain HCD_03025 86dba1f48ef42f1faac0e02a973b9637 218 Pfam PF02674 Colicin V production protein 4 150 4.7E-26 T 13-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 HCD_02760 3d66c309d8db117f576f0952ad45ba7a 418 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 202 412 3.3E-66 T 13-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 HCD_02760 3d66c309d8db117f576f0952ad45ba7a 418 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 10 83 3.3E-24 T 13-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 HCD_02760 3d66c309d8db117f576f0952ad45ba7a 418 Pfam PF07670 Nucleoside recognition 100 196 1.2E-5 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 HCD_02760 3d66c309d8db117f576f0952ad45ba7a 418 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 6 412 1.1E-152 T 13-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 HCD_06280 ea1fbc7be10843903dcf9566191a8e00 167 Pfam PF13391 HNH endonuclease 65 117 3.6E-7 T 13-10-2018 IPR003615 HNH nuclease HCD_04535 36a1a873e2159b016d178cbca154a26e 397 SUPERFAMILY SSF50249 135 202 1.9E-9 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_04535 36a1a873e2159b016d178cbca154a26e 397 SUPERFAMILY SSF54814 203 281 9.48E-26 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 HCD_04535 36a1a873e2159b016d178cbca154a26e 397 Pfam PF08529 NusA N-terminal domain 5 110 4.4E-8 T 13-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 HCD_04535 36a1a873e2159b016d178cbca154a26e 397 SMART SM00316 135 201 7.8E-6 T 13-10-2018 IPR022967 RNA-binding domain, S1 HCD_04535 36a1a873e2159b016d178cbca154a26e 397 Gene3D G3DSA:3.30.1480.10 2 126 3.5E-9 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 HCD_04535 36a1a873e2159b016d178cbca154a26e 397 Gene3D G3DSA:2.40.50.140 138 201 2.1E-9 T 13-10-2018 HCD_04535 36a1a873e2159b016d178cbca154a26e 397 Gene3D G3DSA:3.30.300.20 283 369 3.3E-16 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta HCD_04535 36a1a873e2159b016d178cbca154a26e 397 Gene3D G3DSA:3.30.300.20 202 280 4.6E-26 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta HCD_04535 36a1a873e2159b016d178cbca154a26e 397 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 366 2.7E-79 T 13-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 HCD_04535 36a1a873e2159b016d178cbca154a26e 397 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 1 395 21.21 T 13-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 HCD_04535 36a1a873e2159b016d178cbca154a26e 397 SUPERFAMILY SSF69705 4 123 9.29E-18 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 HCD_04535 36a1a873e2159b016d178cbca154a26e 397 Pfam PF13184 NusA-like KH domain 233 301 3.2E-23 T 13-10-2018 IPR025249 KH domain, NusA-like GO:0003723 HCD_05025 2f7bf2dc80f6e9685ab7692dffdc0ebb 389 Pfam PF13252 Protein of unknown function (DUF4043) 133 360 6.5E-12 T 13-10-2018 IPR025267 Protein of unknown function DUF4043 HCD_00925 2f7bf2dc80f6e9685ab7692dffdc0ebb 389 Pfam PF13252 Protein of unknown function (DUF4043) 133 360 6.5E-12 T 13-10-2018 IPR025267 Protein of unknown function DUF4043 HCD_03470 69fda36e8761b3ae9910deee8ef89f66 522 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 370 390 7.7E-25 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03470 69fda36e8761b3ae9910deee8ef89f66 522 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 481 502 7.7E-25 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03470 69fda36e8761b3ae9910deee8ef89f66 522 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 344 365 7.7E-25 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03470 69fda36e8761b3ae9910deee8ef89f66 522 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 393 414 7.7E-25 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03470 69fda36e8761b3ae9910deee8ef89f66 522 Pfam PF01856 Helicobacter outer membrane protein 355 522 3.1E-42 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01460 bf675d9a6ce23c7d94e9d230e20211b9 78 Hamap MF_01217 Acyl carrier protein [acpP]. 2 76 22.556 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 HCD_01460 bf675d9a6ce23c7d94e9d230e20211b9 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 76 1.1E-34 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 HCD_01460 bf675d9a6ce23c7d94e9d230e20211b9 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 34 73 1.0E-12 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 HCD_01460 bf675d9a6ce23c7d94e9d230e20211b9 78 SUPERFAMILY SSF47336 3 75 5.76E-22 T 13-10-2018 IPR036736 ACP-like superfamily HCD_01460 bf675d9a6ce23c7d94e9d230e20211b9 78 Gene3D G3DSA:1.10.1200.10 1 77 1.9E-28 T 13-10-2018 IPR036736 ACP-like superfamily HCD_01460 bf675d9a6ce23c7d94e9d230e20211b9 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 31 46 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site HCD_01460 bf675d9a6ce23c7d94e9d230e20211b9 78 Pfam PF00550 Phosphopantetheine attachment site 6 72 1.8E-15 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain HCD_06175 7c62807f34b7ebc03d42f6080548952b 141 Pfam PF13155 Toprim-like 11 79 3.2E-7 T 13-10-2018 HCD_06175 7c62807f34b7ebc03d42f6080548952b 141 SUPERFAMILY SSF56731 5 116 6.02E-18 T 13-10-2018 HCD_06175 7c62807f34b7ebc03d42f6080548952b 141 Gene3D G3DSA:3.40.1360.10 1 93 5.0E-15 T 13-10-2018 HCD_00145 744e419a13e336efd55da0c87bf16e1a 426 PIRSF PIRSF001369 36 426 2.7E-135 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type HCD_00145 744e419a13e336efd55da0c87bf16e1a 426 PRINTS PR00143 Citrate synthase signature 249 277 3.8E-48 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 HCD_00145 744e419a13e336efd55da0c87bf16e1a 426 PRINTS PR00143 Citrate synthase signature 304 324 3.8E-48 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 HCD_00145 744e419a13e336efd55da0c87bf16e1a 426 PRINTS PR00143 Citrate synthase signature 388 402 3.8E-48 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 HCD_00145 744e419a13e336efd55da0c87bf16e1a 426 PRINTS PR00143 Citrate synthase signature 165 178 3.8E-48 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 HCD_00145 744e419a13e336efd55da0c87bf16e1a 426 PRINTS PR00143 Citrate synthase signature 368 384 3.8E-48 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 HCD_00145 744e419a13e336efd55da0c87bf16e1a 426 PRINTS PR00143 Citrate synthase signature 227 242 3.8E-48 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 HCD_00145 744e419a13e336efd55da0c87bf16e1a 426 Pfam PF00285 Citrate synthase, C-terminal domain 45 420 8.6E-120 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 HCD_00145 744e419a13e336efd55da0c87bf16e1a 426 ProSitePatterns PS00480 Citrate synthase signature. 311 323 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 HCD_00145 744e419a13e336efd55da0c87bf16e1a 426 Gene3D G3DSA:1.10.580.10 56 420 2.0E-126 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 HCD_00145 744e419a13e336efd55da0c87bf16e1a 426 SUPERFAMILY SSF48256 4 425 4.19E-135 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 HCD_00145 744e419a13e336efd55da0c87bf16e1a 426 Gene3D G3DSA:2.20.28.60 2 49 1.1E-15 T 13-10-2018 HCD_00145 744e419a13e336efd55da0c87bf16e1a 426 Gene3D G3DSA:1.10.230.10 276 385 2.0E-126 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain HCD_05375 0a6e3a132cd8a23dc22ed3cc8a482748 478 Gene3D G3DSA:3.30.70.20 109 192 1.4E-10 T 13-10-2018 HCD_05375 0a6e3a132cd8a23dc22ed3cc8a482748 478 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 378 389 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_05375 0a6e3a132cd8a23dc22ed3cc8a482748 478 Pfam PF12837 4Fe-4S binding domain 152 173 1.4E-5 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_05375 0a6e3a132cd8a23dc22ed3cc8a482748 478 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 158 169 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_05375 0a6e3a132cd8a23dc22ed3cc8a482748 478 SUPERFAMILY SSF54862 100 440 1.38E-21 T 13-10-2018 HCD_05375 0a6e3a132cd8a23dc22ed3cc8a482748 478 Gene3D G3DSA:3.30.70.20 341 394 1.9E-8 T 13-10-2018 HCD_08235 ea6334464baf521f8ea81f1fa07843ab 407 Pfam PF16491 CAAX prenyl protease N-terminal, five membrane helices 45 200 9.9E-26 T 13-10-2018 IPR032456 CAAX prenyl protease 1, N-terminal KEGG: 00900+3.4.24.84 HCD_08235 ea6334464baf521f8ea81f1fa07843ab 407 Pfam PF01435 Peptidase family M48 203 404 1.9E-44 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 HCD_08235 ea6334464baf521f8ea81f1fa07843ab 407 Gene3D G3DSA:3.30.2010.10 199 280 1.0E-27 T 13-10-2018 HCD_08510 2799b12895df7ab5614476c00c464dcb 277 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 44 258 1.6E-45 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF HCD_08510 2799b12895df7ab5614476c00c464dcb 277 SUPERFAMILY SSF53850 9 258 1.16E-56 T 13-10-2018 HCD_08510 2799b12895df7ab5614476c00c464dcb 277 Gene3D G3DSA:3.40.190.10 35 257 9.7E-74 T 13-10-2018 HCD_08510 2799b12895df7ab5614476c00c464dcb 277 SMART SM00062 43 264 2.9E-71 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF HCD_08510 2799b12895df7ab5614476c00c464dcb 277 Gene3D G3DSA:3.40.190.10 133 222 9.7E-74 T 13-10-2018 HCD_02940 0270e956be9acd2c6a02743f8e460927 103 ProSitePatterns PS00605 ATP synthase c subunit signature. 61 82 - T 13-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_02940 0270e956be9acd2c6a02743f8e460927 103 Hamap MF_01396 ATP synthase subunit c [atpH]. 31 96 14.702 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_02940 0270e956be9acd2c6a02743f8e460927 103 Gene3D G3DSA:1.20.20.10 24 102 2.6E-21 T 13-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_02940 0270e956be9acd2c6a02743f8e460927 103 PRINTS PR00124 ATP synthase C subunit signature 33 52 1.4E-11 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_02940 0270e956be9acd2c6a02743f8e460927 103 PRINTS PR00124 ATP synthase C subunit signature 54 69 1.4E-11 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_02940 0270e956be9acd2c6a02743f8e460927 103 PRINTS PR00124 ATP synthase C subunit signature 71 96 1.4E-11 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_02940 0270e956be9acd2c6a02743f8e460927 103 Pfam PF00137 ATP synthase subunit C 32 94 4.8E-12 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 HCD_02940 0270e956be9acd2c6a02743f8e460927 103 SUPERFAMILY SSF81333 23 99 1.7E-17 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily HCD_01480 4da25f2911ac68e0e941b5905c6d0fc5 790 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 173 3.6E-22 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain HCD_01480 4da25f2911ac68e0e941b5905c6d0fc5 790 Pfam PF00593 TonB dependent receptor 287 789 3.0E-26 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel HCD_01480 4da25f2911ac68e0e941b5905c6d0fc5 790 Gene3D G3DSA:2.40.170.20 210 790 3.1E-79 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily HCD_01480 4da25f2911ac68e0e941b5905c6d0fc5 790 Gene3D G3DSA:2.170.130.10 57 182 2.3E-27 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily HCD_01480 4da25f2911ac68e0e941b5905c6d0fc5 790 SUPERFAMILY SSF56935 55 790 3.21E-91 T 13-10-2018 HCD_00655 955710eec0c2c0a9ec0ecdc3be1852c9 265 Gene3D G3DSA:3.40.50.300 2 242 1.4E-56 T 13-10-2018 HCD_00655 955710eec0c2c0a9ec0ecdc3be1852c9 265 Gene3D G3DSA:1.10.20.140 77 146 1.4E-56 T 13-10-2018 HCD_00655 955710eec0c2c0a9ec0ecdc3be1852c9 265 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 2 249 4.7E-88 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 HCD_00655 955710eec0c2c0a9ec0ecdc3be1852c9 265 Pfam PF01715 IPP transferase 6 243 5.4E-53 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 HCD_01300 18ec3418e378e168168f83aee7b6fc2a 273 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 51 198 1.6E-35 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 HCD_01300 18ec3418e378e168168f83aee7b6fc2a 273 SUPERFAMILY SSF52518 14 264 9.76E-70 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold HCD_01300 18ec3418e378e168168f83aee7b6fc2a 273 Gene3D G3DSA:3.40.50.970 64 263 4.7E-27 T 13-10-2018 HCD_04260 cfdbba06d2317b3c5199b364c272c1a3 233 SUPERFAMILY SSF52141 13 230 1.44E-65 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 HCD_04260 cfdbba06d2317b3c5199b364c272c1a3 233 Gene3D G3DSA:3.40.470.10 6 233 3.9E-71 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 HCD_04260 cfdbba06d2317b3c5199b364c272c1a3 233 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 63 72 - T 13-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 HCD_04260 cfdbba06d2317b3c5199b364c272c1a3 233 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 13 224 2.2E-71 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 HCD_04260 cfdbba06d2317b3c5199b364c272c1a3 233 Pfam PF03167 Uracil DNA glycosylase superfamily 57 211 2.5E-13 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 HCD_04260 cfdbba06d2317b3c5199b364c272c1a3 233 SMART SM00986 55 221 7.6E-19 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 HCD_04260 cfdbba06d2317b3c5199b364c272c1a3 233 SMART SM00987 55 221 7.6E-19 T 13-10-2018 HCD_04260 cfdbba06d2317b3c5199b364c272c1a3 233 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 10 232 33.012 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 HCD_01615 3d89565a4d058cafef73e6b26d5af719 262 SUPERFAMILY SSF53335 1 256 5.91E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_01615 3d89565a4d058cafef73e6b26d5af719 262 Pfam PF01564 Spermine/spermidine synthase domain 56 219 2.7E-32 T 13-10-2018 HCD_01615 3d89565a4d058cafef73e6b26d5af719 262 Pfam PF17284 Spermidine synthase tetramerisation domain 1 49 9.2E-15 T 13-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 HCD_01615 3d89565a4d058cafef73e6b26d5af719 262 Gene3D G3DSA:3.40.50.150 52 262 3.3E-46 T 13-10-2018 HCD_01615 3d89565a4d058cafef73e6b26d5af719 262 Gene3D G3DSA:2.30.140.10 1 51 5.7E-30 T 13-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 HCD_01615 3d89565a4d058cafef73e6b26d5af719 262 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 1 257 19.88 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 HCD_06665 b62785e4371137fb372433c8bbb4e09e 329 Gene3D G3DSA:1.10.3470.10 2 329 5.6E-87 T 13-10-2018 IPR037294 ABC transporter, BtuC-like HCD_06665 b62785e4371137fb372433c8bbb4e09e 329 SUPERFAMILY SSF81345 4 325 2.75E-72 T 13-10-2018 IPR037294 ABC transporter, BtuC-like HCD_06665 b62785e4371137fb372433c8bbb4e09e 329 Pfam PF01032 FecCD transport family 14 325 8.1E-82 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 HCD_08280 810dd571d6af6866be5927fdd6874b48 359 Gene3D G3DSA:2.170.150.20 198 346 1.2E-57 T 13-10-2018 HCD_08280 810dd571d6af6866be5927fdd6874b48 359 Pfam PF01625 Peptide methionine sulfoxide reductase 38 185 6.3E-60 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 HCD_08280 810dd571d6af6866be5927fdd6874b48 359 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 35 190 34.805 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 HCD_08280 810dd571d6af6866be5927fdd6874b48 359 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 37 184 1.5E-51 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 HCD_08280 810dd571d6af6866be5927fdd6874b48 359 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 203 337 2.7E-66 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 HCD_08280 810dd571d6af6866be5927fdd6874b48 359 Gene3D G3DSA:3.30.1060.10 18 195 1.0E-62 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 HCD_08280 810dd571d6af6866be5927fdd6874b48 359 SUPERFAMILY SSF51316 202 342 4.08E-55 T 13-10-2018 IPR011057 Mss4-like superfamily HCD_08280 810dd571d6af6866be5927fdd6874b48 359 Pfam PF01641 SelR domain 209 328 3.3E-47 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 HCD_08280 810dd571d6af6866be5927fdd6874b48 359 SUPERFAMILY SSF55068 24 188 4.32E-63 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 HCD_05650 aef239c6ed943087affd164e45af120b 145 SUPERFAMILY SSF54690 8 139 1.83E-30 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 HCD_05650 aef239c6ed943087affd164e45af120b 145 Pfam PF02391 MoaE protein 18 115 7.6E-12 T 13-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 HCD_05650 aef239c6ed943087affd164e45af120b 145 Gene3D G3DSA:3.90.1170.40 1 145 1.9E-57 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 HCD_07750 9af9514eb5565fce40b04d82a24095a2 447 Gene3D G3DSA:3.20.20.70 175 444 3.2E-98 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_07750 9af9514eb5565fce40b04d82a24095a2 447 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 6 446 1.6E-190 T 13-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 HCD_07750 9af9514eb5565fce40b04d82a24095a2 447 Pfam PF01474 Class-II DAHP synthetase family 6 439 2.4E-192 T 13-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 HCD_07750 9af9514eb5565fce40b04d82a24095a2 447 SUPERFAMILY SSF51569 3 443 2.27E-184 T 13-10-2018 HCD_00260 e5ed2198f2552f1d4336ca883bff28ef 341 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 330 130.521 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 HCD_00260 e5ed2198f2552f1d4336ca883bff28ef 341 PIRSF PIRSF002465 1 330 1.7E-125 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 HCD_00260 e5ed2198f2552f1d4336ca883bff28ef 341 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 1 329 2.4E-144 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 HCD_00260 e5ed2198f2552f1d4336ca883bff28ef 341 Pfam PF02504 Fatty acid synthesis protein 1 317 7.0E-133 T 13-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 HCD_00260 e5ed2198f2552f1d4336ca883bff28ef 341 SUPERFAMILY SSF53659 1 325 6.99E-95 T 13-10-2018 HCD_00260 e5ed2198f2552f1d4336ca883bff28ef 341 Gene3D G3DSA:3.40.718.10 1 338 3.7E-124 T 13-10-2018 HCD_00395 b19c0408f4128b13264c10c303d54d20 201 Gene3D G3DSA:3.40.50.2020 1 201 8.9E-65 T 13-10-2018 HCD_00395 b19c0408f4128b13264c10c303d54d20 201 SUPERFAMILY SSF53271 8 148 2.13E-37 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like HCD_00395 b19c0408f4128b13264c10c303d54d20 201 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 201 23.689 T 13-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 HCD_00395 b19c0408f4128b13264c10c303d54d20 201 TIGRFAM TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase 2 199 5.8E-69 T 13-10-2018 IPR006273 Orotate phosphoribosyltransferase, bacterial GO:0004588|GO:0019856 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 HCD_00395 b19c0408f4128b13264c10c303d54d20 201 Pfam PF00156 Phosphoribosyl transferase domain 35 149 2.2E-8 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 HCD_03110 ef6864f0ab8f72bb0e44a10fe8bde68c 328 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 263 278 5.8E-56 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 HCD_03110 ef6864f0ab8f72bb0e44a10fe8bde68c 328 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 118 132 5.8E-56 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 HCD_03110 ef6864f0ab8f72bb0e44a10fe8bde68c 328 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 148 167 5.8E-56 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 HCD_03110 ef6864f0ab8f72bb0e44a10fe8bde68c 328 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 238 254 5.8E-56 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 HCD_03110 ef6864f0ab8f72bb0e44a10fe8bde68c 328 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 186 205 5.8E-56 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 HCD_03110 ef6864f0ab8f72bb0e44a10fe8bde68c 328 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 293 312 5.8E-56 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 HCD_03110 ef6864f0ab8f72bb0e44a10fe8bde68c 328 PIRSF PIRSF001415 1 322 2.6E-137 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 HCD_03110 ef6864f0ab8f72bb0e44a10fe8bde68c 328 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 238 250 - T 13-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 HCD_03110 ef6864f0ab8f72bb0e44a10fe8bde68c 328 SMART SM01004 1 319 2.1E-204 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 HCD_03110 ef6864f0ab8f72bb0e44a10fe8bde68c 328 Pfam PF00490 Delta-aminolevulinic acid dehydratase 3 316 4.4E-137 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 HCD_03110 ef6864f0ab8f72bb0e44a10fe8bde68c 328 Gene3D G3DSA:3.20.20.70 1 320 2.8E-136 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_03110 ef6864f0ab8f72bb0e44a10fe8bde68c 328 SUPERFAMILY SSF51569 2 321 2.05E-130 T 13-10-2018 HCD_05110 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF01385 Probable transposase 247 328 4.4E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_05110 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF12323 Helix-turn-helix domain 1 47 2.5E-13 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_05110 4a11360770cb77fa4361bfb3c5153db7 440 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 298 377 3.1E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_05110 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF07282 Putative transposase DNA-binding domain 350 418 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_07850 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF01385 Probable transposase 247 328 4.4E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_07850 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF12323 Helix-turn-helix domain 1 47 2.5E-13 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_07850 4a11360770cb77fa4361bfb3c5153db7 440 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 298 377 3.1E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_07850 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF07282 Putative transposase DNA-binding domain 350 418 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_08330 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF01385 Probable transposase 247 328 4.4E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_08330 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF12323 Helix-turn-helix domain 1 47 2.5E-13 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_08330 4a11360770cb77fa4361bfb3c5153db7 440 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 298 377 3.1E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_08330 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF07282 Putative transposase DNA-binding domain 350 418 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_08095 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF01385 Probable transposase 247 328 4.4E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_08095 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF12323 Helix-turn-helix domain 1 47 2.5E-13 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_08095 4a11360770cb77fa4361bfb3c5153db7 440 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 298 377 3.1E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_08095 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF07282 Putative transposase DNA-binding domain 350 418 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_01195 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF01385 Probable transposase 247 328 4.4E-7 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 HCD_01195 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF12323 Helix-turn-helix domain 1 47 2.5E-13 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_01195 4a11360770cb77fa4361bfb3c5153db7 440 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 298 377 3.1E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_01195 4a11360770cb77fa4361bfb3c5153db7 440 Pfam PF07282 Putative transposase DNA-binding domain 350 418 1.5E-21 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_04570 e6adfc5b04b51f1e1ea0342ccbdf36a9 651 PIRSF PIRSF015855 1 648 2.0E-157 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 HCD_04570 e6adfc5b04b51f1e1ea0342ccbdf36a9 651 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 117 129 1.1E-19 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 HCD_04570 e6adfc5b04b51f1e1ea0342ccbdf36a9 651 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 397 419 1.1E-19 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 HCD_04570 e6adfc5b04b51f1e1ea0342ccbdf36a9 651 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 420 434 1.1E-19 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 HCD_04570 e6adfc5b04b51f1e1ea0342ccbdf36a9 651 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 179 198 1.1E-19 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 HCD_04570 e6adfc5b04b51f1e1ea0342ccbdf36a9 651 SUPERFAMILY SSF53335 92 474 1.59E-55 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_04570 e6adfc5b04b51f1e1ea0342ccbdf36a9 651 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 120 126 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_04570 e6adfc5b04b51f1e1ea0342ccbdf36a9 651 Pfam PF01555 DNA methylase 117 467 2.3E-43 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 HCD_01335 5890fe1cf6d5d6e3dadd755c77757f7c 122 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 37 111 2.1E-25 T 13-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 HCD_01335 5890fe1cf6d5d6e3dadd755c77757f7c 122 SUPERFAMILY SSF101801 37 112 4.84E-18 T 13-10-2018 IPR036429 SpoA-like superfamily HCD_01335 5890fe1cf6d5d6e3dadd755c77757f7c 122 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 39 109 8.6E-21 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) HCD_01335 5890fe1cf6d5d6e3dadd755c77757f7c 122 Gene3D G3DSA:2.30.330.10 18 118 1.4E-21 T 13-10-2018 IPR036429 SpoA-like superfamily HCD_01335 5890fe1cf6d5d6e3dadd755c77757f7c 122 PRINTS PR00956 Flagellar motor switch protein FliN signature 39 55 1.6E-20 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 HCD_01335 5890fe1cf6d5d6e3dadd755c77757f7c 122 PRINTS PR00956 Flagellar motor switch protein FliN signature 85 100 1.6E-20 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 HCD_01335 5890fe1cf6d5d6e3dadd755c77757f7c 122 PRINTS PR00956 Flagellar motor switch protein FliN signature 72 85 1.6E-20 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 HCD_01335 5890fe1cf6d5d6e3dadd755c77757f7c 122 PRINTS PR00956 Flagellar motor switch protein FliN signature 56 72 1.6E-20 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 HCD_07110 fc2fe137fae041bda40c55581a393cb4 264 Gene3D G3DSA:3.40.30.10 129 264 5.4E-42 T 13-10-2018 HCD_07110 fc2fe137fae041bda40c55581a393cb4 264 SUPERFAMILY SSF52833 132 253 4.48E-8 T 13-10-2018 IPR036249 Thioredoxin-like superfamily HCD_07110 fc2fe137fae041bda40c55581a393cb4 264 Gene3D G3DSA:3.10.450.520 29 94 2.2E-32 T 13-10-2018 HCD_04590 c1c299506871a9388299512a605e7514 250 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 28 37 - T 13-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 HCD_04590 c1c299506871a9388299512a605e7514 250 ProSitePatterns PS00727 AP endonucleases family 1 signature 2. 184 200 - T 13-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 HCD_04590 c1c299506871a9388299512a605e7514 250 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 249 5.8E-104 T 13-10-2018 HCD_04590 c1c299506871a9388299512a605e7514 250 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 249 4.2E-104 T 13-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 HCD_04590 c1c299506871a9388299512a605e7514 250 Gene3D G3DSA:3.60.10.10 1 250 4.9E-98 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily HCD_04590 c1c299506871a9388299512a605e7514 250 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 210 221 - T 13-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 HCD_04590 c1c299506871a9388299512a605e7514 250 SUPERFAMILY SSF56219 1 249 1.44E-79 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily HCD_04590 c1c299506871a9388299512a605e7514 250 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 242 8.0E-22 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase HCD_00160 abdf66d97ca1820347a8cb88982d31d3 194 SUPERFAMILY SSF48317 51 188 3.14E-11 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily HCD_00160 abdf66d97ca1820347a8cb88982d31d3 194 Gene3D G3DSA:1.20.144.10 81 193 8.4E-10 T 13-10-2018 HCD_00160 abdf66d97ca1820347a8cb88982d31d3 194 Pfam PF01569 PAP2 superfamily 106 189 1.0E-11 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase HCD_00160 abdf66d97ca1820347a8cb88982d31d3 194 SMART SM00014 81 189 0.0098 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase HCD_05555 f165549f49770e6f4d4b96595d7a77a8 183 Gene3D G3DSA:2.50.20.10 24 182 1.0E-19 T 13-10-2018 HCD_05555 f165549f49770e6f4d4b96595d7a77a8 183 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 33 171 4.5E-10 T 13-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like HCD_05555 f165549f49770e6f4d4b96595d7a77a8 183 SUPERFAMILY SSF89392 30 173 5.49E-27 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX HCD_00450 cf5b2a1d77f15d17b221a48be7ba8301 178 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 18 158 5.5E-31 T 13-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00450 cf5b2a1d77f15d17b221a48be7ba8301 178 Gene3D G3DSA:1.20.120.1200 3 161 6.0E-36 T 13-10-2018 HCD_06295 923760aeaf825327f43a67282ca80c0f 151 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 151 16.436 T 13-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 HCD_06295 923760aeaf825327f43a67282ca80c0f 151 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 3.3E-13 T 13-10-2018 HCD_06295 923760aeaf825327f43a67282ca80c0f 151 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 3.3E-13 T 13-10-2018 HCD_06295 923760aeaf825327f43a67282ca80c0f 151 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 3.3E-13 T 13-10-2018 HCD_06295 923760aeaf825327f43a67282ca80c0f 151 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 73 9.1E-25 T 13-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 HCD_03450 60a09b2a5b3e2a25827dd2d554e89683 514 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 1.8E-44 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 HCD_03450 60a09b2a5b3e2a25827dd2d554e89683 514 Pfam PF07196 Flagellin hook IN motif 198 256 2.1E-9 T 13-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 HCD_03450 60a09b2a5b3e2a25827dd2d554e89683 514 Pfam PF07196 Flagellin hook IN motif 262 311 8.9E-10 T 13-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 HCD_03450 60a09b2a5b3e2a25827dd2d554e89683 514 Gene3D G3DSA:1.20.58.1830 5 513 1.4E-91 T 13-10-2018 HCD_03450 60a09b2a5b3e2a25827dd2d554e89683 514 Gene3D G3DSA:2.30.220.10 191 297 1.4E-91 T 13-10-2018 HCD_03450 60a09b2a5b3e2a25827dd2d554e89683 514 SUPERFAMILY SSF64518 1 514 9.42E-96 T 13-10-2018 HCD_03450 60a09b2a5b3e2a25827dd2d554e89683 514 Pfam PF00700 Bacterial flagellin C-terminal helical region 428 513 1.4E-23 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 HCD_03450 60a09b2a5b3e2a25827dd2d554e89683 514 Gene3D G3DSA:1.20.1330.10 45 473 1.4E-91 T 13-10-2018 HCD_03450 60a09b2a5b3e2a25827dd2d554e89683 514 Gene3D G3DSA:2.170.280.10 178 421 1.4E-91 T 13-10-2018 HCD_03450 60a09b2a5b3e2a25827dd2d554e89683 514 PRINTS PR00207 Flagellin signature 37 54 1.4E-20 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 HCD_03450 60a09b2a5b3e2a25827dd2d554e89683 514 PRINTS PR00207 Flagellin signature 76 95 1.4E-20 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 HCD_03450 60a09b2a5b3e2a25827dd2d554e89683 514 PRINTS PR00207 Flagellin signature 111 134 1.4E-20 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 HCD_02740 742f47a1330836cd652aeea9221216bf 498 Gene3D G3DSA:3.90.220.20 284 467 3.3E-11 T 13-10-2018 HCD_02740 742f47a1330836cd652aeea9221216bf 498 Gene3D G3DSA:3.90.220.20 34 236 7.9E-16 T 13-10-2018 HCD_02740 742f47a1330836cd652aeea9221216bf 498 Pfam PF01420 Type I restriction modification DNA specificity domain 330 435 1.2E-7 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 HCD_02740 742f47a1330836cd652aeea9221216bf 498 SUPERFAMILY SSF116734 307 437 9.32E-11 T 13-10-2018 HCD_02740 742f47a1330836cd652aeea9221216bf 498 SUPERFAMILY SSF116734 45 223 3.76E-12 T 13-10-2018 HCD_00555 55c39f561985d73842105eef5288d0dc 453 SUPERFAMILY SSF51366 12 251 1.88E-75 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 HCD_00555 55c39f561985d73842105eef5288d0dc 453 Gene3D G3DSA:3.20.20.70 8 252 6.2E-160 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_00555 55c39f561985d73842105eef5288d0dc 453 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 249 4.6E-80 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 HCD_00555 55c39f561985d73842105eef5288d0dc 453 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 47 65 - T 13-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 HCD_00555 55c39f561985d73842105eef5288d0dc 453 SUPERFAMILY SSF51366 254 451 2.35E-48 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 HCD_00555 55c39f561985d73842105eef5288d0dc 453 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 254 447 9.0E-43 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 HCD_00555 55c39f561985d73842105eef5288d0dc 453 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 251 32.549 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 HCD_00555 55c39f561985d73842105eef5288d0dc 453 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 252 453 26.843 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 HCD_00555 55c39f561985d73842105eef5288d0dc 453 Gene3D G3DSA:3.20.20.70 253 446 6.2E-160 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_05940 fde44de6325af173357c3e65e50e43a4 566 Pfam PF03235 Protein of unknown function DUF262 9 262 2.3E-31 T 13-10-2018 IPR004919 Domain of unknown function DUF262 HCD_02385 36a7db5382c60e6dce6147f56df70cd8 378 SUPERFAMILY SSF51338 2 374 1.78E-18 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 HCD_02385 36a7db5382c60e6dce6147f56df70cd8 378 Gene3D G3DSA:3.20.20.140 1 75 2.0E-9 T 13-10-2018 HCD_02385 36a7db5382c60e6dce6147f56df70cd8 378 SUPERFAMILY SSF51556 59 321 2.04E-36 T 13-10-2018 IPR032466 Metal-dependent hydrolase HCD_02385 36a7db5382c60e6dce6147f56df70cd8 378 Pfam PF01979 Amidohydrolase family 216 367 6.1E-12 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 HCD_02385 36a7db5382c60e6dce6147f56df70cd8 378 Gene3D G3DSA:3.20.20.140 76 372 1.7E-38 T 13-10-2018 HCD_04750 ff8c1f9e098ff7379114d279617b6c16 365 Pfam PF00107 Zinc-binding dehydrogenase 199 319 9.4E-19 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 HCD_04750 ff8c1f9e098ff7379114d279617b6c16 365 SMART SM00829 24 354 0.0025 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 HCD_04750 ff8c1f9e098ff7379114d279617b6c16 365 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 40 157 6.4E-24 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 HCD_04750 ff8c1f9e098ff7379114d279617b6c16 365 SUPERFAMILY SSF51735 163 324 1.12E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_04750 ff8c1f9e098ff7379114d279617b6c16 365 Gene3D G3DSA:3.40.50.720 173 326 7.7E-118 T 13-10-2018 HCD_04750 ff8c1f9e098ff7379114d279617b6c16 365 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 72 86 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 HCD_04750 ff8c1f9e098ff7379114d279617b6c16 365 SUPERFAMILY SSF50129 21 183 6.29E-45 T 13-10-2018 IPR011032 GroES-like superfamily HCD_04750 ff8c1f9e098ff7379114d279617b6c16 365 Gene3D G3DSA:3.90.180.10 33 354 7.7E-118 T 13-10-2018 HCD_05840 132e1636fc0e2c5f5b9d412db8daf180 483 Pfam PF02521 Putative outer membrane protein 13 483 6.6E-138 T 13-10-2018 IPR003678 Putative outer membrane protein HCD_03340 0792d5fc0e4731ba23b801cf9505a792 416 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 72 168 3.8E-9 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like HCD_01420 da69b61b1f1bcdfe4a4c97acad9b0504 257 Pfam PF13186 Iron-sulfur cluster-binding domain 181 247 2.3E-12 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain HCD_01420 da69b61b1f1bcdfe4a4c97acad9b0504 257 SUPERFAMILY SSF102114 1 248 7.06E-15 T 13-10-2018 HCD_07285 029b241e764750194ace2c1ed5f5a5e2 250 Pfam PF11463 R.HinP1I restriction endonuclease 43 249 2.5E-94 T 13-10-2018 IPR021107 Restriction endonuclease, type II, HinP1I HCD_07285 029b241e764750194ace2c1ed5f5a5e2 250 Gene3D G3DSA:3.40.1350.40 4 110 2.2E-34 T 13-10-2018 HCD_07285 029b241e764750194ace2c1ed5f5a5e2 250 Gene3D G3DSA:3.40.1350.40 132 195 5.0E-6 T 13-10-2018 HCD_05900 69a59e11dd2a046b60496a3771ce75a8 376 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 193 370 9.5E-10 T 13-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_05900 69a59e11dd2a046b60496a3771ce75a8 376 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 15 187 5.8E-39 T 13-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_05900 69a59e11dd2a046b60496a3771ce75a8 376 SUPERFAMILY SSF55120 5 371 3.74E-81 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_05900 69a59e11dd2a046b60496a3771ce75a8 376 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 78 91 - T 13-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 HCD_05900 69a59e11dd2a046b60496a3771ce75a8 376 Gene3D G3DSA:3.30.2350.20 5 200 8.3E-46 T 13-10-2018 HCD_05900 69a59e11dd2a046b60496a3771ce75a8 376 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 1 375 7.0E-104 T 13-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_05900 69a59e11dd2a046b60496a3771ce75a8 376 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 6 375 27.484 T 13-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_03780 a4f54c37279ef3d3885704d96d8dce89 161 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 3 160 9.1E-51 T 13-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 HCD_03780 a4f54c37279ef3d3885704d96d8dce89 161 Pfam PF00460 Flagella basal body rod protein 9 33 1.0E-6 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 HCD_03780 a4f54c37279ef3d3885704d96d8dce89 161 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 12 32 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site HCD_03780 a4f54c37279ef3d3885704d96d8dce89 161 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 110 158 3.4E-12 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain HCD_00080 4e8a678e283035de4492c67eb7c22397 309 Gene3D G3DSA:2.60.40.2500 211 309 4.7E-18 T 13-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily HCD_00080 4e8a678e283035de4492c67eb7c22397 309 Pfam PF03524 Conjugal transfer protein 59 304 4.4E-27 T 13-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX HCD_03965 4dbe2f53748b53aec629619746cce98b 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 1.1E-23 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03965 4dbe2f53748b53aec629619746cce98b 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03965 4dbe2f53748b53aec629619746cce98b 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 17.047 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03965 4dbe2f53748b53aec629619746cce98b 37 Pfam PF00444 Ribosomal protein L36 1 37 4.2E-18 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03965 4dbe2f53748b53aec629619746cce98b 37 SUPERFAMILY SSF57840 1 37 3.92E-16 T 13-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03255 40c740f241799019850d96822646ed3d 211 Gene3D G3DSA:3.40.50.10420 32 211 5.3E-23 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily HCD_03255 40c740f241799019850d96822646ed3d 211 SUPERFAMILY SSF100950 33 210 2.01E-29 T 13-10-2018 IPR037171 NagB/RpiA transferase-like HCD_03255 40c740f241799019850d96822646ed3d 211 Pfam PF02589 LUD domain 48 210 4.1E-21 T 13-10-2018 IPR003741 LUD domain HCD_00520 3a50cb87c4c12f332e8b2f51834cafb8 352 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 85 301 1.8E-8 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 HCD_00520 3a50cb87c4c12f332e8b2f51834cafb8 352 SUPERFAMILY SSF53756 18 340 4.71E-42 T 13-10-2018 HCD_00520 3a50cb87c4c12f332e8b2f51834cafb8 352 Gene3D G3DSA:3.40.50.2000 11 158 1.8E-11 T 13-10-2018 HCD_00520 3a50cb87c4c12f332e8b2f51834cafb8 352 Gene3D G3DSA:3.40.50.2000 174 342 1.7E-15 T 13-10-2018 HCD_00315 0f22a97c8980aac222b80e4fdb9f622a 504 Pfam PF13091 PLD-like domain 312 446 2.7E-19 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 HCD_00315 0f22a97c8980aac222b80e4fdb9f622a 504 Pfam PF13091 PLD-like domain 74 223 1.7E-18 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 HCD_00315 0f22a97c8980aac222b80e4fdb9f622a 504 Gene3D G3DSA:3.30.870.10 292 468 9.1E-31 T 13-10-2018 HCD_00315 0f22a97c8980aac222b80e4fdb9f622a 504 SUPERFAMILY SSF56024 52 237 1.05E-33 T 13-10-2018 HCD_00315 0f22a97c8980aac222b80e4fdb9f622a 504 SMART SM00155 164 191 0.0086 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 HCD_00315 0f22a97c8980aac222b80e4fdb9f622a 504 SMART SM00155 398 425 1.2E-4 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 HCD_00315 0f22a97c8980aac222b80e4fdb9f622a 504 Gene3D G3DSA:3.30.870.10 55 253 1.0E-33 T 13-10-2018 HCD_00315 0f22a97c8980aac222b80e4fdb9f622a 504 SUPERFAMILY SSF56024 305 449 1.5E-24 T 13-10-2018 HCD_04660 42df5a9b48fc732c1e4ef7aa90d3c6b1 930 Pfam PF04851 Type III restriction enzyme, res subunit 138 341 1.4E-10 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 HCD_04660 42df5a9b48fc732c1e4ef7aa90d3c6b1 930 SUPERFAMILY SSF52540 23 370 2.02E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04660 42df5a9b48fc732c1e4ef7aa90d3c6b1 930 Gene3D G3DSA:3.40.50.300 126 355 5.6E-9 T 13-10-2018 HCD_04660 42df5a9b48fc732c1e4ef7aa90d3c6b1 930 SUPERFAMILY SSF52540 302 532 1.77E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_08410 b975e158d8562ef7350473c720590352 418 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 376 397 4.6E-19 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_08410 b975e158d8562ef7350473c720590352 418 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 297 318 4.6E-19 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_08410 b975e158d8562ef7350473c720590352 418 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 253 274 4.6E-19 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_08410 b975e158d8562ef7350473c720590352 418 Pfam PF01856 Helicobacter outer membrane protein 264 416 8.2E-41 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03890 e6db4d44d50c614b9c47389b5963e64e 934 Gene3D G3DSA:3.40.50.300 202 411 3.0E-21 T 13-10-2018 HCD_03890 e6db4d44d50c614b9c47389b5963e64e 934 Pfam PF00580 UvrD/REP helicase N-terminal domain 8 406 2.0E-44 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 HCD_03890 e6db4d44d50c614b9c47389b5963e64e 934 SUPERFAMILY SSF52540 8 728 3.04E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_03890 e6db4d44d50c614b9c47389b5963e64e 934 Pfam PF13361 UvrD-like helicase C-terminal domain 412 545 7.2E-7 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 HCD_03890 e6db4d44d50c614b9c47389b5963e64e 934 Pfam PF13361 UvrD-like helicase C-terminal domain 621 728 2.9E-13 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 HCD_03890 e6db4d44d50c614b9c47389b5963e64e 934 Gene3D G3DSA:3.40.50.300 606 800 1.0E-18 T 13-10-2018 HCD_03890 e6db4d44d50c614b9c47389b5963e64e 934 Gene3D G3DSA:3.40.50.300 413 537 1.3E-8 T 13-10-2018 HCD_03150 cc5dc92f2cc4ac7454ee28cb1fbb6ec6 199 Gene3D G3DSA:2.60.40.3500 93 198 2.9E-5 T 13-10-2018 HCD_03150 cc5dc92f2cc4ac7454ee28cb1fbb6ec6 199 Pfam PF11741 AMIN domain 116 192 1.7E-9 T 13-10-2018 IPR021731 AMIN domain HCD_03015 ffbe62a9953bfb919735962345799e14 416 Pfam PF00464 Serine hydroxymethyltransferase 5 379 6.1E-164 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 HCD_03015 ffbe62a9953bfb919735962345799e14 416 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 4 412 49.215 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 HCD_03015 ffbe62a9953bfb919735962345799e14 416 SUPERFAMILY SSF53383 5 412 5.27E-166 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase HCD_03015 ffbe62a9953bfb919735962345799e14 416 Gene3D G3DSA:3.90.1150.10 7 390 5.1E-172 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 HCD_03015 ffbe62a9953bfb919735962345799e14 416 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 218 234 - T 13-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 HCD_03015 ffbe62a9953bfb919735962345799e14 416 Gene3D G3DSA:3.40.640.10 34 284 5.1E-172 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 HCD_03015 ffbe62a9953bfb919735962345799e14 416 PIRSF PIRSF000412 2 413 2.3E-158 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 HCD_02290 b51e82a6c0a6a59ffeb9a502b1deea21 418 Pfam PF00919 Uncharacterized protein family UPF0004 3 87 2.2E-18 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 HCD_02290 b51e82a6c0a6a59ffeb9a502b1deea21 418 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 413 1.1E-116 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 HCD_02290 b51e82a6c0a6a59ffeb9a502b1deea21 418 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 6 399 8.2E-114 T 13-10-2018 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 HCD_02290 b51e82a6c0a6a59ffeb9a502b1deea21 418 Gene3D G3DSA:3.40.50.12160 2 129 6.7E-16 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily HCD_02290 b51e82a6c0a6a59ffeb9a502b1deea21 418 Pfam PF04055 Radical SAM superfamily 139 300 5.9E-19 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 HCD_02290 b51e82a6c0a6a59ffeb9a502b1deea21 418 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 138 158 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 HCD_02290 b51e82a6c0a6a59ffeb9a502b1deea21 418 SUPERFAMILY SSF102114 129 359 2.49E-44 T 13-10-2018 HCD_02290 b51e82a6c0a6a59ffeb9a502b1deea21 418 SMART SM00729 134 347 4.1E-36 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 HCD_02290 b51e82a6c0a6a59ffeb9a502b1deea21 418 Gene3D G3DSA:3.80.30.20 132 357 3.0E-63 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe HCD_02585 8c35fdcd13a2e34efc55434e2194af0f 491 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 318 339 1.7E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02585 8c35fdcd13a2e34efc55434e2194af0f 491 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 344 364 1.7E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02585 8c35fdcd13a2e34efc55434e2194af0f 491 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 451 472 1.7E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02585 8c35fdcd13a2e34efc55434e2194af0f 491 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 365 386 1.7E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02585 8c35fdcd13a2e34efc55434e2194af0f 491 Pfam PF01856 Helicobacter outer membrane protein 329 491 4.1E-47 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02100 2ab63c9b277bfb420ac930c378121b77 298 Gene3D G3DSA:3.30.2350.10 59 284 3.2E-49 T 13-10-2018 HCD_02100 2ab63c9b277bfb420ac930c378121b77 298 SUPERFAMILY SSF55120 70 294 5.28E-51 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_02100 2ab63c9b277bfb420ac930c378121b77 298 Pfam PF00849 RNA pseudouridylate synthase 80 227 9.5E-24 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_02100 2ab63c9b277bfb420ac930c378121b77 298 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 115 129 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_05535 eeacb0330e3c7ce4ebb7152f5f5d218d 314 SUPERFAMILY SSF55326 4 129 7.15E-26 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily HCD_05535 eeacb0330e3c7ce4ebb7152f5f5d218d 314 Pfam PF02769 AIR synthase related protein, C-terminal domain 141 311 6.8E-26 T 13-10-2018 IPR010918 PurM-like, C-terminal domain HCD_05535 eeacb0330e3c7ce4ebb7152f5f5d218d 314 Pfam PF00586 AIR synthase related protein, N-terminal domain 20 126 2.9E-11 T 13-10-2018 IPR016188 PurM-like, N-terminal domain HCD_05535 eeacb0330e3c7ce4ebb7152f5f5d218d 314 SUPERFAMILY SSF56042 133 309 9.57E-38 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily HCD_05535 eeacb0330e3c7ce4ebb7152f5f5d218d 314 TIGRFAM TIGR00476 selD: selenide, water dikinase 5 282 1.1E-89 T 13-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 HCD_05535 eeacb0330e3c7ce4ebb7152f5f5d218d 314 Gene3D G3DSA:3.30.1330.10 1 131 3.7E-32 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily HCD_05535 eeacb0330e3c7ce4ebb7152f5f5d218d 314 PIRSF PIRSF036407 1 314 8.8E-92 T 13-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 HCD_05535 eeacb0330e3c7ce4ebb7152f5f5d218d 314 Gene3D G3DSA:3.90.650.10 134 313 4.7E-47 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily HCD_00610 4a692d4ff751dc2b665c792e976a71ac 56 Gene3D G3DSA:1.25.40.10 1 56 1.3E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_00610 4a692d4ff751dc2b665c792e976a71ac 56 SUPERFAMILY SSF81901 3 55 9.16E-7 T 13-10-2018 HCD_06865 da85cc2dba8027e9558eba19254d63d6 400 Gene3D G3DSA:2.70.70.10 277 398 4.9E-13 T 13-10-2018 IPR011055 Duplicated hybrid motif HCD_06865 da85cc2dba8027e9558eba19254d63d6 400 SUPERFAMILY SSF51261 194 396 1.36E-15 T 13-10-2018 IPR011055 Duplicated hybrid motif HCD_06865 da85cc2dba8027e9558eba19254d63d6 400 Pfam PF01551 Peptidase family M23 314 393 4.5E-10 T 13-10-2018 IPR016047 Peptidase M23 HCD_01270 af94e5dcf7cffc5bb37c583b98413f39 192 Gene3D G3DSA:1.10.490.90 34 192 2.9E-85 T 13-10-2018 IPR038285 Tipalpha superfamily HCD_01270 af94e5dcf7cffc5bb37c583b98413f39 192 Pfam PF16753 TNF-alpha-Inducing protein of Helicobacter 32 181 2.8E-71 T 13-10-2018 IPR031923 Helicobacter TNF-alpha-inducing protein HCD_01680 07a765f9745da33ce19cdc36c7f66d66 356 SUPERFAMILY SSF102414 8 223 9.29E-50 T 13-10-2018 IPR036715 Alpha-2,3-sialyltransferase superfamily HCD_01680 07a765f9745da33ce19cdc36c7f66d66 356 Pfam PF06002 Alpha-2,3-sialyltransferase (CST-I) 8 245 2.6E-78 T 13-10-2018 IPR009251 Alpha-2,3-sialyltransferase HCD_01680 07a765f9745da33ce19cdc36c7f66d66 356 Gene3D G3DSA:3.90.1480.10 1 265 2.0E-76 T 13-10-2018 IPR036715 Alpha-2,3-sialyltransferase superfamily HCD_07025 1f593dc171c66f672485d7b88febba39 385 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 25 375 33.138 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 HCD_07025 1f593dc171c66f672485d7b88febba39 385 ProSitePatterns PS01135 FtsZ protein signature 2. 114 135 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 HCD_07025 1f593dc171c66f672485d7b88febba39 385 Pfam PF12327 FtsZ family, C-terminal domain 239 333 1.5E-19 T 13-10-2018 IPR024757 Cell division protein FtsZ, C-terminal HCD_07025 1f593dc171c66f672485d7b88febba39 385 Gene3D G3DSA:3.30.1330.20 238 344 7.2E-28 T 13-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 HCD_07025 1f593dc171c66f672485d7b88febba39 385 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 26 340 1.5E-123 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 HCD_07025 1f593dc171c66f672485d7b88febba39 385 SUPERFAMILY SSF55307 222 335 1.28E-33 T 13-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 HCD_07025 1f593dc171c66f672485d7b88febba39 385 SUPERFAMILY SSF52490 28 225 4.97E-57 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 HCD_07025 1f593dc171c66f672485d7b88febba39 385 SMART SM00864 29 222 1.8E-88 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 HCD_07025 1f593dc171c66f672485d7b88febba39 385 Gene3D G3DSA:3.40.50.1440 24 236 3.1E-71 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 HCD_07025 1f593dc171c66f672485d7b88febba39 385 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 29 187 1.8E-38 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 HCD_07025 1f593dc171c66f672485d7b88febba39 385 PRINTS PR00423 Cell division protein FtsZ signature 143 164 3.3E-37 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 HCD_07025 1f593dc171c66f672485d7b88febba39 385 PRINTS PR00423 Cell division protein FtsZ signature 206 228 3.3E-37 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 HCD_07025 1f593dc171c66f672485d7b88febba39 385 PRINTS PR00423 Cell division protein FtsZ signature 115 135 3.3E-37 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 HCD_07025 1f593dc171c66f672485d7b88febba39 385 PRINTS PR00423 Cell division protein FtsZ signature 229 250 3.3E-37 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 HCD_07025 1f593dc171c66f672485d7b88febba39 385 SMART SM00865 224 343 1.5E-37 T 13-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 HCD_07025 1f593dc171c66f672485d7b88febba39 385 ProSitePatterns PS01134 FtsZ protein signature 1. 61 95 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 HCD_06220 e3fcde79263c84d395aaef21a3dd9514 307 Gene3D G3DSA:1.10.600.10 1 307 4.2E-107 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily HCD_06220 e3fcde79263c84d395aaef21a3dd9514 307 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 192 204 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site HCD_06220 e3fcde79263c84d395aaef21a3dd9514 307 Pfam PF00348 Polyprenyl synthetase 35 252 1.4E-49 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 HCD_06220 e3fcde79263c84d395aaef21a3dd9514 307 SUPERFAMILY SSF48576 35 295 1.1E-62 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily HCD_06050 602e25d97158b22fb4c3fef46094eb4f 179 Gene3D G3DSA:1.20.120.1760 1 175 1.3E-13 T 13-10-2018 HCD_06050 602e25d97158b22fb4c3fef46094eb4f 179 Pfam PF01066 CDP-alcohol phosphatidyltransferase 7 81 2.0E-16 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 HCD_06050 602e25d97158b22fb4c3fef46094eb4f 179 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 59 81 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 HCD_06050 602e25d97158b22fb4c3fef46094eb4f 179 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 6 178 7.0E-52 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 HCD_06050 602e25d97158b22fb4c3fef46094eb4f 179 PIRSF PIRSF000847 2 179 1.7E-50 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 HCD_01265 40bbcb33ed0daaf50855326eff6f2f0b 662 SUPERFAMILY SSF56601 211 637 7.44E-103 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like HCD_01265 40bbcb33ed0daaf50855326eff6f2f0b 662 SUPERFAMILY SSF53955 41 254 1.01E-69 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily HCD_01265 40bbcb33ed0daaf50855326eff6f2f0b 662 Gene3D G3DSA:1.10.3810.10 47 246 2.0E-66 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_01265 40bbcb33ed0daaf50855326eff6f2f0b 662 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 66 613 2.0E-168 T 13-10-2018 HCD_01265 40bbcb33ed0daaf50855326eff6f2f0b 662 Pfam PF00912 Transglycosylase 54 229 3.1E-57 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 HCD_01265 40bbcb33ed0daaf50855326eff6f2f0b 662 Pfam PF00905 Penicillin binding protein transpeptidase domain 334 609 2.1E-32 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 HCD_01265 40bbcb33ed0daaf50855326eff6f2f0b 662 Gene3D G3DSA:3.40.710.10 248 657 2.1E-97 T 13-10-2018 HCD_00800 c46d9ed5fcebef62f34250ad343c0151 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 2.3E-27 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00800 c46d9ed5fcebef62f34250ad343c0151 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 13-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_00800 c46d9ed5fcebef62f34250ad343c0151 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 42 6.0E-17 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00800 c46d9ed5fcebef62f34250ad343c0151 44 Pfam PF00468 Ribosomal protein L34 1 44 7.0E-25 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00800 c46d9ed5fcebef62f34250ad343c0151 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.274 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 Gene3D G3DSA:1.25.40.10 147 355 1.3E-54 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 Pfam PF13176 Tetratricopeptide repeat 133 158 0.0063 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 SUPERFAMILY SSF81901 146 353 1.11E-44 T 13-10-2018 HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 Pfam PF08238 Sel1 repeat 240 274 3.7E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 Pfam PF08238 Sel1 repeat 59 94 2.3E-5 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 Pfam PF08238 Sel1 repeat 97 120 0.03 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 Pfam PF08238 Sel1 repeat 166 201 1.2E-4 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 Pfam PF08238 Sel1 repeat 277 310 5.9E-4 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 Pfam PF08238 Sel1 repeat 204 234 0.0059 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 SUPERFAMILY SSF81901 38 136 1.88E-23 T 13-10-2018 HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 SMART SM00671 165 201 1.1E-7 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 SMART SM00671 59 94 5.9E-10 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 SMART SM00671 131 164 0.0087 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 SMART SM00671 239 274 5.8E-10 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 SMART SM00671 95 130 1.6E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 SMART SM00671 311 343 0.091 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 SMART SM00671 275 310 1.0E-7 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 SMART SM00671 202 238 3.7E-5 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 Pfam PF13181 Tetratricopeptide repeat 313 341 0.044 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_06195 637ae3918a8c776adb0aa5137fc97c5b 356 Gene3D G3DSA:1.25.40.10 28 146 1.5E-29 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_08245 dda222748240106d7f6b2451c1f02304 448 SMART SM00839 200 447 2.6E-69 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 HCD_08245 dda222748240106d7f6b2451c1f02304 448 PIRSF PIRSF000185 18 448 4.1E-105 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 HCD_08245 dda222748240106d7f6b2451c1f02304 448 SUPERFAMILY SSF53223 2 192 4.16E-69 T 13-10-2018 HCD_08245 dda222748240106d7f6b2451c1f02304 448 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 118 131 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 HCD_08245 dda222748240106d7f6b2451c1f02304 448 SUPERFAMILY SSF51735 198 448 1.35E-67 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_08245 dda222748240106d7f6b2451c1f02304 448 Gene3D G3DSA:3.40.50.720 205 374 1.0E-166 T 13-10-2018 HCD_08245 dda222748240106d7f6b2451c1f02304 448 Gene3D G3DSA:1.10.285.10 386 448 6.3E-8 T 13-10-2018 HCD_08245 dda222748240106d7f6b2451c1f02304 448 Gene3D G3DSA:3.40.50.10860 51 186 1.0E-166 T 13-10-2018 HCD_08245 dda222748240106d7f6b2451c1f02304 448 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 198 447 3.4E-82 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 HCD_08245 dda222748240106d7f6b2451c1f02304 448 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 53 181 9.4E-48 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 HCD_08245 dda222748240106d7f6b2451c1f02304 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 231 251 1.3E-28 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 HCD_08245 dda222748240106d7f6b2451c1f02304 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 373 384 1.3E-28 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 HCD_08245 dda222748240106d7f6b2451c1f02304 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 110 124 1.3E-28 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 HCD_08245 dda222748240106d7f6b2451c1f02304 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 189 211 1.3E-28 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 HCD_08245 dda222748240106d7f6b2451c1f02304 448 Gene3D G3DSA:1.10.285.10 2 385 1.0E-166 T 13-10-2018 HCD_07195 771dc15d1e224edfdb860c28234e4e73 104 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 2 104 23.209 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07195 771dc15d1e224edfdb860c28234e4e73 104 TIGRFAM TIGR00061 L21: ribosomal protein bL21 3 103 2.0E-40 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07195 771dc15d1e224edfdb860c28234e4e73 104 SUPERFAMILY SSF141091 2 103 6.67E-33 T 13-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07195 771dc15d1e224edfdb860c28234e4e73 104 ProSitePatterns PS01169 Ribosomal protein L21 signature. 73 95 - T 13-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_07195 771dc15d1e224edfdb860c28234e4e73 104 Pfam PF00829 Ribosomal prokaryotic L21 protein 3 102 2.3E-34 T 13-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_05195 559b9fa0e9ff5d5b6850677117680f19 401 SUPERFAMILY SSF53448 10 287 8.72E-19 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_05195 559b9fa0e9ff5d5b6850677117680f19 401 Pfam PF01501 Glycosyl transferase family 8 11 268 7.3E-34 T 13-10-2018 IPR002495 Glycosyl transferase, family 8 GO:0016757 HCD_05195 559b9fa0e9ff5d5b6850677117680f19 401 Gene3D G3DSA:3.90.550.10 11 286 2.2E-18 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_05905 2db7277ed5b92746f42983095a8256d5 308 Hamap MF_00188 Protease HtpX [htpX]. 11 307 23.496 T 13-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 HCD_05905 2db7277ed5b92746f42983095a8256d5 308 Pfam PF01435 Peptidase family M48 98 307 1.6E-50 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 HCD_05905 2db7277ed5b92746f42983095a8256d5 308 Gene3D G3DSA:3.30.2010.10 92 182 3.2E-25 T 13-10-2018 HCD_00505 ccf6a1757b39d139a84518a7fbb84a56 218 Pfam PF03070 TENA/THI-4/PQQC family 9 216 6.4E-69 T 13-10-2018 IPR004305 Thiaminase-2/PQQC HCD_00505 ccf6a1757b39d139a84518a7fbb84a56 218 Gene3D G3DSA:1.20.910.10 1 217 3.1E-66 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 HCD_00505 ccf6a1757b39d139a84518a7fbb84a56 218 SUPERFAMILY SSF48613 1 215 7.53E-67 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 HCD_00505 ccf6a1757b39d139a84518a7fbb84a56 218 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 11 217 1.0E-91 T 13-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 HCD_06465 3f2e9093f64c0b45b8af27481c22de1e 269 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 192 263 2.1E-12 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain HCD_06465 3f2e9093f64c0b45b8af27481c22de1e 269 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 140 3.8E-27 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G HCD_06465 3f2e9093f64c0b45b8af27481c22de1e 269 SUPERFAMILY SSF117143 96 225 9.81E-20 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like HCD_06465 3f2e9093f64c0b45b8af27481c22de1e 269 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site HCD_06465 3f2e9093f64c0b45b8af27481c22de1e 269 Pfam PF00460 Flagella basal body rod protein 6 35 8.2E-7 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 HCD_05330 7ee1f2d8de8fd01aac2aba08e004ad67 173 SUPERFAMILY SSF50324 13 172 1.83E-62 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 HCD_05330 7ee1f2d8de8fd01aac2aba08e004ad67 173 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 13 172 36.013 T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 HCD_05330 7ee1f2d8de8fd01aac2aba08e004ad67 173 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 64 70 - T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 HCD_05330 7ee1f2d8de8fd01aac2aba08e004ad67 173 Pfam PF00719 Inorganic pyrophosphatase 17 172 2.4E-55 T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 HCD_05330 7ee1f2d8de8fd01aac2aba08e004ad67 173 Gene3D G3DSA:3.90.80.10 1 173 4.1E-70 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 HCD_00345 b3f75ab972d19e95c4ba297354d427b6 342 Pfam PF06144 DNA polymerase III, delta subunit 20 200 2.1E-12 T 13-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 HCD_00345 b3f75ab972d19e95c4ba297354d427b6 342 Gene3D G3DSA:1.10.8.60 157 236 6.7E-6 T 13-10-2018 HCD_00345 b3f75ab972d19e95c4ba297354d427b6 342 Gene3D G3DSA:3.40.50.300 6 133 5.2E-7 T 13-10-2018 HCD_00345 b3f75ab972d19e95c4ba297354d427b6 342 SUPERFAMILY SSF52540 2 214 1.59E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_05225 7e631f32835dc5b51a7c2fda7671bb9c 254 Pfam PF01925 Sulfite exporter TauE/SafE 8 243 1.0E-36 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 HCD_04825 f8017f0543cc9811320d2e1ce20b711d 439 Gene3D G3DSA:3.40.50.300 69 334 1.0E-108 T 13-10-2018 HCD_04825 f8017f0543cc9811320d2e1ce20b711d 439 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 1 433 47.476 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 HCD_04825 f8017f0543cc9811320d2e1ce20b711d 439 SUPERFAMILY SSF52540 72 423 3.11E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04825 f8017f0543cc9811320d2e1ce20b711d 439 Pfam PF07724 AAA domain (Cdc48 subfamily) 135 328 7.5E-47 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 HCD_04825 f8017f0543cc9811320d2e1ce20b711d 439 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 3 430 2.3E-203 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 HCD_04825 f8017f0543cc9811320d2e1ce20b711d 439 Pfam PF06689 ClpX C4-type zinc finger 5 45 5.4E-5 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 HCD_04825 f8017f0543cc9811320d2e1ce20b711d 439 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 339 406 1.2E-11 T 13-10-2018 IPR019489 Clp ATPase, C-terminal HCD_04825 f8017f0543cc9811320d2e1ce20b711d 439 SMART SM00382 134 296 6.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_04825 f8017f0543cc9811320d2e1ce20b711d 439 SMART SM01086 336 429 2.4E-27 T 13-10-2018 IPR019489 Clp ATPase, C-terminal HCD_04825 f8017f0543cc9811320d2e1ce20b711d 439 SMART SM00994 4 50 4.6E-6 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 HCD_04825 f8017f0543cc9811320d2e1ce20b711d 439 Gene3D G3DSA:1.10.8.60 335 439 6.0E-41 T 13-10-2018 HCD_07115 2565a0c5901b9da38b36ea71fc2de1e1 239 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 229 8.4E-104 T 13-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 HCD_07115 2565a0c5901b9da38b36ea71fc2de1e1 239 Gene3D G3DSA:3.90.550.10 1 237 1.4E-69 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_07115 2565a0c5901b9da38b36ea71fc2de1e1 239 Pfam PF02348 Cytidylyltransferase 1 210 3.2E-60 T 13-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 HCD_07115 2565a0c5901b9da38b36ea71fc2de1e1 239 SUPERFAMILY SSF53448 2 233 7.35E-47 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_07115 2565a0c5901b9da38b36ea71fc2de1e1 239 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 236 32.81 T 13-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 HCD_05790 3ae7b900f2f73900ff3f621e86807555 1383 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 1247 1268 7.2E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05790 3ae7b900f2f73900ff3f621e86807555 1383 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 1200 1221 7.2E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05790 3ae7b900f2f73900ff3f621e86807555 1383 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 1226 1246 7.2E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05790 3ae7b900f2f73900ff3f621e86807555 1383 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 1343 1364 7.2E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05790 3ae7b900f2f73900ff3f621e86807555 1383 Pfam PF01856 Helicobacter outer membrane protein 1211 1383 2.8E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00869 2938 3197 2.8E-8 T 13-10-2018 IPR005546 Autotransporter beta-domain HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SUPERFAMILY SSF103515 2924 3209 8.24E-19 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 Pfam PF03077 Putative vacuolating cytotoxin 1375 1425 1.1E-10 T 13-10-2018 IPR004311 Vacuolating cytotoxin, putative HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 Pfam PF03077 Putative vacuolating cytotoxin 563 622 3.0E-21 T 13-10-2018 IPR004311 Vacuolating cytotoxin, putative HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 Pfam PF03077 Putative vacuolating cytotoxin 986 1045 2.3E-22 T 13-10-2018 IPR004311 Vacuolating cytotoxin, putative HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 Pfam PF03077 Putative vacuolating cytotoxin 146 205 9.0E-22 T 13-10-2018 IPR004311 Vacuolating cytotoxin, putative HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 Pfam PF03077 Putative vacuolating cytotoxin 2078 2134 1.1E-21 T 13-10-2018 IPR004311 Vacuolating cytotoxin, putative HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00710 1602 1623 6000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00710 1542 1564 2400.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00710 331 359 2500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00710 463 489 7900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00710 636 658 870.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00710 1444 1466 8900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00710 866 897 2100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00710 2631 2652 5200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00710 2737 2758 9200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00710 1145 1172 3700.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00710 1100 1131 2500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00710 258 290 8000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat HCD_05490 ffb4b5ed21da81f8782726a821e21be9 3209 SMART SM00710 737 758 7100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat HCD_03575 5488153d09cd14b592bd3abc64cd2e68 157 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 152 13.278 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 HCD_03575 5488153d09cd14b592bd3abc64cd2e68 157 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 48 56 1.8E-12 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 HCD_03575 5488153d09cd14b592bd3abc64cd2e68 157 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 92 107 1.8E-12 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 HCD_03575 5488153d09cd14b592bd3abc64cd2e68 157 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 127 143 1.8E-12 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 HCD_03575 5488153d09cd14b592bd3abc64cd2e68 157 ProSitePatterns PS00855 Signal peptidases II signature. 95 107 - T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 HCD_03575 5488153d09cd14b592bd3abc64cd2e68 157 Pfam PF01252 Signal peptidase (SPase) II 16 147 2.6E-23 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 HCD_03575 5488153d09cd14b592bd3abc64cd2e68 157 TIGRFAM TIGR00077 lspA: signal peptidase II 3 154 8.5E-46 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 HCD_08070 bb7cd330d5adf5f459d1f469fe7edeea 125 Pfam PF00872 Transposase, Mutator family 5 123 1.4E-29 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 HCD_00225 bb7cd330d5adf5f459d1f469fe7edeea 125 Pfam PF00872 Transposase, Mutator family 5 123 1.4E-29 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 HCD_02780 7a5c35932e95b85f3e8aaa065024c6d7 458 PIRSF PIRSF006603 1 453 8.4E-65 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 HCD_02780 7a5c35932e95b85f3e8aaa065024c6d7 458 Pfam PF01554 MatE 23 184 5.2E-32 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 HCD_02780 7a5c35932e95b85f3e8aaa065024c6d7 458 Pfam PF01554 MatE 247 404 1.4E-16 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 HCD_00770 934a06a1ca719deb67c931f9d506f46a 162 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 126 3.8E-23 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 HCD_00770 934a06a1ca719deb67c931f9d506f46a 162 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 59 71 3.8E-23 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 HCD_00770 934a06a1ca719deb67c931f9d506f46a 162 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 127 142 3.8E-23 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 HCD_00770 934a06a1ca719deb67c931f9d506f46a 162 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 99 114 3.8E-23 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 HCD_00770 934a06a1ca719deb67c931f9d506f46a 162 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 33 48 3.8E-23 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 HCD_00770 934a06a1ca719deb67c931f9d506f46a 162 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 54 71 - T 13-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 HCD_00770 934a06a1ca719deb67c931f9d506f46a 162 Gene3D G3DSA:2.40.100.10 14 160 1.6E-54 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily HCD_00770 934a06a1ca719deb67c931f9d506f46a 162 SUPERFAMILY SSF50891 19 153 7.31E-50 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily HCD_00770 934a06a1ca719deb67c931f9d506f46a 162 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 20 151 1.8E-41 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 HCD_00770 934a06a1ca719deb67c931f9d506f46a 162 PIRSF PIRSF001467 8 158 1.4E-40 T 13-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 HCD_02745 de757dca2c035d4c1ded5e13dafd3dff 720 SUPERFAMILY SSF53335 238 707 3.23E-55 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_02745 de757dca2c035d4c1ded5e13dafd3dff 720 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 512 518 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_02745 de757dca2c035d4c1ded5e13dafd3dff 720 Pfam PF02384 N-6 DNA Methylase 368 702 4.2E-27 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 HCD_02745 de757dca2c035d4c1ded5e13dafd3dff 720 Gene3D G3DSA:3.40.50.150 359 719 1.4E-51 T 13-10-2018 HCD_02745 de757dca2c035d4c1ded5e13dafd3dff 720 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 509 521 1.6E-12 T 13-10-2018 HCD_02745 de757dca2c035d4c1ded5e13dafd3dff 720 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 381 397 1.6E-12 T 13-10-2018 HCD_02745 de757dca2c035d4c1ded5e13dafd3dff 720 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 564 588 1.6E-12 T 13-10-2018 HCD_02745 de757dca2c035d4c1ded5e13dafd3dff 720 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 405 419 1.6E-12 T 13-10-2018 HCD_05825 e5967b05af17fa9383f4a53fc874b1b1 339 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 45 268 1.5E-11 T 13-10-2018 IPR003788 Protein arginine methyltransferase NDUFAF7 Reactome: R-HSA-6799198 HCD_05825 e5967b05af17fa9383f4a53fc874b1b1 339 Gene3D G3DSA:3.40.50.12710 2 338 7.0E-48 T 13-10-2018 IPR038375 Protein arginine methyltransferase NDUFAF7 superfamily Reactome: R-HSA-6799198 HCD_05825 e5967b05af17fa9383f4a53fc874b1b1 339 SUPERFAMILY SSF53335 3 334 5.98E-57 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_07430 4470abb3a32a13652b2f799f9bdee070 383 Pfam PF06306 Beta-1,4-N-acetylgalactosaminyltransferase (CgtA) 110 378 4.5E-66 T 13-10-2018 IPR010446 Beta-1,4-N-acetylgalactosaminyltransferase HCD_04160 9f1a494e2e9302aa3332c7fb7eac740d 213 SUPERFAMILY SSF52172 3 173 1.39E-34 T 13-10-2018 IPR011006 CheY-like superfamily HCD_04160 9f1a494e2e9302aa3332c7fb7eac740d 213 Gene3D G3DSA:1.10.10.10 130 212 5.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_04160 9f1a494e2e9302aa3332c7fb7eac740d 213 Pfam PF00072 Response regulator receiver domain 5 115 5.1E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_04160 9f1a494e2e9302aa3332c7fb7eac740d 213 Pfam PF00486 Transcriptional regulatory protein, C terminal 142 210 1.4E-16 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 HCD_04160 9f1a494e2e9302aa3332c7fb7eac740d 213 SMART SM00862 141 210 9.5E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 HCD_04160 9f1a494e2e9302aa3332c7fb7eac740d 213 SMART SM00448 3 115 5.8E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_04160 9f1a494e2e9302aa3332c7fb7eac740d 213 Gene3D G3DSA:3.40.50.2300 1 129 3.9E-32 T 13-10-2018 HCD_04890 46ed3f9fbe3124733010d2ea9772f2f2 146 Pfam PF01618 MotA/TolQ/ExbB proton channel family 49 141 5.3E-28 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel HCD_04890 46ed3f9fbe3124733010d2ea9772f2f2 146 TIGRFAM TIGR02805 exbB2: tonB-system energizer ExbB 8 143 3.8E-61 T 13-10-2018 IPR014172 TonB-system energizer ExbB type-2 GO:0016020|GO:0055085 HCD_08115 71b8c1472adf79a948bdc42781a763d0 336 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 5 236 1.0E-111 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 HCD_08115 71b8c1472adf79a948bdc42781a763d0 336 Gene3D G3DSA:1.10.10.10 258 334 3.1E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_08115 71b8c1472adf79a948bdc42781a763d0 336 SMART SM00382 52 186 2.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_08115 71b8c1472adf79a948bdc42781a763d0 336 SUPERFAMILY SSF52540 21 251 1.43E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_08115 71b8c1472adf79a948bdc42781a763d0 336 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 336 149.059 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 HCD_08115 71b8c1472adf79a948bdc42781a763d0 336 Gene3D G3DSA:3.40.50.300 21 182 3.9E-41 T 13-10-2018 HCD_08115 71b8c1472adf79a948bdc42781a763d0 336 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 252 327 3.0E-34 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 HCD_08115 71b8c1472adf79a948bdc42781a763d0 336 Gene3D G3DSA:1.10.8.60 183 257 1.5E-26 T 13-10-2018 HCD_08115 71b8c1472adf79a948bdc42781a763d0 336 SUPERFAMILY SSF46785 257 328 2.45E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily HCD_08115 71b8c1472adf79a948bdc42781a763d0 336 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 254 326 6.2E-26 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 HCD_08115 71b8c1472adf79a948bdc42781a763d0 336 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 25 326 2.1E-142 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 HCD_08605 cd6c5a36d2d2792456b8024a461e35ba 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 146 243 6.5E-32 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G HCD_08605 cd6c5a36d2d2792456b8024a461e35ba 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 5.0E-48 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G HCD_08605 cd6c5a36d2d2792456b8024a461e35ba 262 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 260 6.5E-27 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain HCD_08605 cd6c5a36d2d2792456b8024a461e35ba 262 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site HCD_08605 cd6c5a36d2d2792456b8024a461e35ba 262 Pfam PF00460 Flagella basal body rod protein 5 35 3.1E-12 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 HCD_08605 cd6c5a36d2d2792456b8024a461e35ba 262 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 5.0E-113 T 13-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 HCD_08605 cd6c5a36d2d2792456b8024a461e35ba 262 SUPERFAMILY SSF117143 92 222 1.1E-37 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like HCD_02115 3eca16795b7c5ec367b4152ad30d2038 135 SUPERFAMILY SSF53098 1 129 1.01E-19 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily HCD_02115 3eca16795b7c5ec367b4152ad30d2038 135 Gene3D G3DSA:3.30.420.140 1 130 1.2E-17 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 HCD_02115 3eca16795b7c5ec367b4152ad30d2038 135 Pfam PF03652 Holliday junction resolvase 2 128 8.7E-21 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 HCD_02115 3eca16795b7c5ec367b4152ad30d2038 135 SMART SM00732 1 93 2.7E-17 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 HCD_02115 3eca16795b7c5ec367b4152ad30d2038 135 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 1 131 14.108 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 HCD_03695 8d10de36284a43c85a578b1e4a1eaad4 327 Gene3D G3DSA:3.40.50.300 2 237 9.7E-72 T 13-10-2018 HCD_03695 8d10de36284a43c85a578b1e4a1eaad4 327 Pfam PF09383 NIL domain 253 323 8.1E-18 T 13-10-2018 IPR018449 NIL domain HCD_03695 8d10de36284a43c85a578b1e4a1eaad4 327 SUPERFAMILY SSF52540 2 237 6.86E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_03695 8d10de36284a43c85a578b1e4a1eaad4 327 Pfam PF00005 ABC transporter 19 167 1.1E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_03695 8d10de36284a43c85a578b1e4a1eaad4 327 SMART SM00382 28 224 5.8E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_03695 8d10de36284a43c85a578b1e4a1eaad4 327 SMART SM00930 250 325 4.5E-20 T 13-10-2018 IPR018449 NIL domain HCD_03695 8d10de36284a43c85a578b1e4a1eaad4 327 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_03695 8d10de36284a43c85a578b1e4a1eaad4 327 Gene3D G3DSA:3.30.70.260 238 327 8.3E-24 T 13-10-2018 HCD_03695 8d10de36284a43c85a578b1e4a1eaad4 327 SUPERFAMILY SSF55021 238 326 2.86E-20 T 13-10-2018 HCD_01225 09f1d1a10e719b77df3759d43975f34a 235 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 25 219 7.5E-12 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain HCD_01225 09f1d1a10e719b77df3759d43975f34a 235 Gene3D G3DSA:1.10.287.470 66 122 5.0E-25 T 13-10-2018 HCD_01225 09f1d1a10e719b77df3759d43975f34a 235 SUPERFAMILY SSF111369 28 220 4.32E-21 T 13-10-2018 HCD_01225 09f1d1a10e719b77df3759d43975f34a 235 Gene3D G3DSA:2.40.50.100 32 162 5.0E-25 T 13-10-2018 HCD_01225 09f1d1a10e719b77df3759d43975f34a 235 Gene3D G3DSA:2.40.30.170 23 213 5.0E-25 T 13-10-2018 HCD_01225 09f1d1a10e719b77df3759d43975f34a 235 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 17 220 1.0E-28 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 HCD_02555 c4f15acc3b9e6063a88653636176ecd5 420 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 1 415 25.764 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 HCD_02555 c4f15acc3b9e6063a88653636176ecd5 420 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 5 413 7.2E-113 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 HCD_02555 c4f15acc3b9e6063a88653636176ecd5 420 Pfam PF02601 Exonuclease VII, large subunit 121 376 5.5E-64 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 HCD_02555 c4f15acc3b9e6063a88653636176ecd5 420 Pfam PF13742 OB-fold nucleic acid binding domain 4 97 2.7E-29 T 13-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 HCD_07515 c735ef61d147f6525b6e29d50d1c11b2 226 Pfam PF04452 RNA methyltransferase 15 225 5.8E-43 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 HCD_07515 c735ef61d147f6525b6e29d50d1c11b2 226 Gene3D G3DSA:3.40.1280.10 2 226 3.6E-30 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal HCD_07515 c735ef61d147f6525b6e29d50d1c11b2 226 SUPERFAMILY SSF75217 76 225 9.94E-29 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases HCD_07515 c735ef61d147f6525b6e29d50d1c11b2 226 PIRSF PIRSF015601 1 226 2.4E-46 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 HCD_07515 c735ef61d147f6525b6e29d50d1c11b2 226 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 1 226 3.1E-65 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 HCD_03850 8aa5249fa41f3034051f722591baa314 403 Pfam PF08245 Mur ligase middle domain 53 253 1.8E-8 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 HCD_03850 8aa5249fa41f3034051f722591baa314 403 SUPERFAMILY SSF53623 23 269 8.55E-51 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 HCD_03850 8aa5249fa41f3034051f722591baa314 403 TIGRFAM TIGR01499 folC: bifunctional protein FolC 35 391 6.6E-89 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 HCD_03850 8aa5249fa41f3034051f722591baa314 403 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 140 155 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 HCD_03850 8aa5249fa41f3034051f722591baa314 403 Gene3D G3DSA:3.40.1190.10 5 273 1.2E-55 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 HCD_03850 8aa5249fa41f3034051f722591baa314 403 SUPERFAMILY SSF53244 275 394 2.24E-19 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 HCD_03850 8aa5249fa41f3034051f722591baa314 403 Gene3D G3DSA:3.90.190.20 275 400 2.5E-18 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 HCD_05405 8e94fd7636304218b211e875f67a50ff 293 Pfam PF01292 Prokaryotic cytochrome b561 91 272 1.7E-18 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 HCD_05405 8e94fd7636304218b211e875f67a50ff 293 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 87 293 1.3E-60 T 13-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 HCD_05405 8e94fd7636304218b211e875f67a50ff 293 Gene3D G3DSA:1.20.950.20 83 293 1.4E-52 T 13-10-2018 HCD_05405 8e94fd7636304218b211e875f67a50ff 293 SUPERFAMILY SSF81342 85 292 4.32E-38 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 HCD_06775 0419926105f088e36ca13a1c61084764 97 Pfam PF02325 YGGT family 16 83 8.9E-15 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 HCD_07380 88eccac2690aa74097cfce58b00aa33c 264 Gene3D G3DSA:3.40.50.300 1 264 4.7E-72 T 13-10-2018 HCD_07380 88eccac2690aa74097cfce58b00aa33c 264 Pfam PF13614 AAA domain 3 183 1.1E-61 T 13-10-2018 IPR025669 AAA domain HCD_07380 88eccac2690aa74097cfce58b00aa33c 264 SUPERFAMILY SSF52540 1 263 1.68E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04755 83488a6e850877ea73b011643c345550 383 SUPERFAMILY SSF51735 156 309 2.76E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_04755 83488a6e850877ea73b011643c345550 383 SMART SM01003 7 138 2.2E-45 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal HCD_04755 83488a6e850877ea73b011643c345550 383 SMART SM01002 153 303 1.3E-35 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain HCD_04755 83488a6e850877ea73b011643c345550 383 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 7 138 2.5E-33 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal HCD_04755 83488a6e850877ea73b011643c345550 383 Gene3D G3DSA:3.40.50.720 6 358 9.4E-103 T 13-10-2018 HCD_04755 83488a6e850877ea73b011643c345550 383 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 152 362 3.8E-59 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain HCD_04755 83488a6e850877ea73b011643c345550 383 SUPERFAMILY SSF52283 6 370 4.0E-45 T 13-10-2018 HCD_04755 83488a6e850877ea73b011643c345550 383 Gene3D G3DSA:3.40.50.720 131 311 9.4E-103 T 13-10-2018 HCD_06940 cb4a938d304af10b2e0db05cd74998ae 321 Pfam PF13353 4Fe-4S single cluster domain 18 121 7.1E-9 T 13-10-2018 HCD_06940 cb4a938d304af10b2e0db05cd74998ae 321 Pfam PF04055 Radical SAM superfamily 15 175 4.9E-28 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 HCD_06940 cb4a938d304af10b2e0db05cd74998ae 321 Gene3D G3DSA:3.20.20.70 1 320 3.6E-80 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_06940 cb4a938d304af10b2e0db05cd74998ae 321 Pfam PF06463 Molybdenum Cofactor Synthesis C 181 302 1.2E-30 T 13-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_06940 cb4a938d304af10b2e0db05cd74998ae 321 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 2 321 37.82 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_06940 cb4a938d304af10b2e0db05cd74998ae 321 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 2 321 4.5E-105 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_06940 cb4a938d304af10b2e0db05cd74998ae 321 SUPERFAMILY SSF102114 2 270 2.49E-66 T 13-10-2018 HCD_06940 cb4a938d304af10b2e0db05cd74998ae 321 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 17 28 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_06940 cb4a938d304af10b2e0db05cd74998ae 321 SMART SM00729 11 212 8.5E-10 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 HCD_05680 87c80e9490d960f9eb750442eb0cfc27 246 Gene3D G3DSA:3.40.190.10 28 243 1.3E-70 T 13-10-2018 HCD_05680 87c80e9490d960f9eb750442eb0cfc27 246 SUPERFAMILY SSF53850 22 244 1.77E-59 T 13-10-2018 HCD_05680 87c80e9490d960f9eb750442eb0cfc27 246 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 29 242 3.9E-80 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 HCD_05680 87c80e9490d960f9eb750442eb0cfc27 246 Pfam PF13531 Bacterial extracellular solute-binding protein 24 243 2.7E-43 T 13-10-2018 HCD_05680 87c80e9490d960f9eb750442eb0cfc27 246 Gene3D G3DSA:3.40.190.10 103 205 1.3E-70 T 13-10-2018 HCD_05680 87c80e9490d960f9eb750442eb0cfc27 246 PIRSF PIRSF004846 1 246 5.1E-58 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 HCD_02565 73122bb8e47de0f5a896a8e7905a55de 214 Pfam PF03448 MgtE intracellular N domain 89 179 7.3E-6 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain HCD_02565 73122bb8e47de0f5a896a8e7905a55de 214 SUPERFAMILY SSF158791 110 177 6.28E-6 T 13-10-2018 HCD_02565 73122bb8e47de0f5a896a8e7905a55de 214 Gene3D G3DSA:1.25.60.10 51 179 2.7E-6 T 13-10-2018 IPR038076 MgtE, N-terminal domain superfamily HCD_05655 30d106c82d7b77ed31bb0553cf403568 73 Gene3D G3DSA:3.10.20.30 1 73 3.9E-26 T 13-10-2018 IPR012675 Beta-grasp domain superfamily HCD_05655 30d106c82d7b77ed31bb0553cf403568 73 Pfam PF02597 ThiS family 4 73 1.7E-14 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 HCD_05655 30d106c82d7b77ed31bb0553cf403568 73 SUPERFAMILY SSF54285 1 73 8.0E-14 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp HCD_03985 b94fa202c8fa33cc5d3f31a807b7fb31 133 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 127 2.2E-17 T 13-10-2018 IPR021131 Ribosomal protein L18e/L15P HCD_03985 b94fa202c8fa33cc5d3f31a807b7fb31 133 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 133 13.275 T 13-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 HCD_03985 b94fa202c8fa33cc5d3f31a807b7fb31 133 SUPERFAMILY SSF52080 5 127 4.71E-30 T 13-10-2018 IPR036227 Ribosomal L18e/L15P superfamily HCD_03985 b94fa202c8fa33cc5d3f31a807b7fb31 133 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 3 132 4.1E-42 T 13-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_01440 b6c476c50e7cec401ef4da76155824e3 67 Pfam PF16777 Transcriptional regulator, RHH-like, CopG 7 66 4.5E-26 T 13-10-2018 IPR031895 RHH transcriptional regulator CopG HCD_01440 b6c476c50e7cec401ef4da76155824e3 67 Gene3D G3DSA:1.10.1220.10 13 67 2.4E-26 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 HCD_01440 b6c476c50e7cec401ef4da76155824e3 67 SUPERFAMILY SSF47598 25 61 3.78E-6 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 HCD_01090 f9c1655b12cb6457981224e1767136d8 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_01090 f9c1655b12cb6457981224e1767136d8 240 SUPERFAMILY SSF52540 3 236 1.86E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01090 f9c1655b12cb6457981224e1767136d8 240 Gene3D G3DSA:3.40.50.300 2 240 2.3E-67 T 13-10-2018 HCD_01090 f9c1655b12cb6457981224e1767136d8 240 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 4 239 1.4E-104 T 13-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 HCD_01090 f9c1655b12cb6457981224e1767136d8 240 SMART SM00382 28 212 1.9E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_01090 f9c1655b12cb6457981224e1767136d8 240 Pfam PF00005 ABC transporter 20 165 1.5E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_05955 7c12275cca0fa21122302663eda13028 533 Pfam PF02384 N-6 DNA Methylase 94 263 2.0E-13 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 HCD_05955 7c12275cca0fa21122302663eda13028 533 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 137 151 9.2E-16 T 13-10-2018 HCD_05955 7c12275cca0fa21122302663eda13028 533 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 203 215 9.2E-16 T 13-10-2018 HCD_05955 7c12275cca0fa21122302663eda13028 533 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 235 259 9.2E-16 T 13-10-2018 HCD_05955 7c12275cca0fa21122302663eda13028 533 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 111 127 9.2E-16 T 13-10-2018 HCD_05955 7c12275cca0fa21122302663eda13028 533 Pfam PF12950 TaqI-like C-terminal specificity domain 388 501 1.6E-22 T 13-10-2018 IPR025931 TaqI-like C-terminal specificity domain HCD_05955 7c12275cca0fa21122302663eda13028 533 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 206 212 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_05955 7c12275cca0fa21122302663eda13028 533 SUPERFAMILY SSF53335 70 342 9.99E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_05955 7c12275cca0fa21122302663eda13028 533 Gene3D G3DSA:3.40.50.150 113 328 1.3E-37 T 13-10-2018 HCD_01180 38eccba645b87fc2ad2d36a7255ffe05 221 SUPERFAMILY SSF81342 8 218 6.08E-36 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 HCD_01180 38eccba645b87fc2ad2d36a7255ffe05 221 Pfam PF01292 Prokaryotic cytochrome b561 10 215 5.2E-32 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 HCD_01180 38eccba645b87fc2ad2d36a7255ffe05 221 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 12 35 3.9E-29 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 HCD_01180 38eccba645b87fc2ad2d36a7255ffe05 221 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 207 220 3.9E-29 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 HCD_01180 38eccba645b87fc2ad2d36a7255ffe05 221 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 176 198 3.9E-29 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 HCD_01180 38eccba645b87fc2ad2d36a7255ffe05 221 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 52 76 3.9E-29 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 HCD_01180 38eccba645b87fc2ad2d36a7255ffe05 221 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 127 146 3.9E-29 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 HCD_01180 38eccba645b87fc2ad2d36a7255ffe05 221 Gene3D G3DSA:1.20.950.20 1 203 2.9E-54 T 13-10-2018 HCD_01180 38eccba645b87fc2ad2d36a7255ffe05 221 TIGRFAM TIGR02125 CytB-hydogenase: Ni/Fe-hydrogenase, b-type cytochrome subunit 9 221 6.5E-85 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 HCD_03430 96dedf7e956802d5ab7de44ee2afd3a0 257 SUPERFAMILY SSF46785 3 79 3.22E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily HCD_03430 96dedf7e956802d5ab7de44ee2afd3a0 257 Gene3D G3DSA:1.10.10.10 1 82 2.5E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_08360 a6f301fb0f3a1d675384fc97fa431a84 332 Pfam PF00589 Phage integrase family 173 321 1.4E-18 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 HCD_08360 a6f301fb0f3a1d675384fc97fa431a84 332 Gene3D G3DSA:1.10.443.10 145 331 3.6E-28 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 HCD_08360 a6f301fb0f3a1d675384fc97fa431a84 332 SUPERFAMILY SSF56349 71 324 1.27E-29 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 HCD_02005 d39da3320a7d7d5ba43e166b9cb55ae9 530 Pfam PF01856 Helicobacter outer membrane protein 368 530 1.9E-43 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02005 d39da3320a7d7d5ba43e166b9cb55ae9 530 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 402 423 1.7E-30 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02005 d39da3320a7d7d5ba43e166b9cb55ae9 530 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 490 511 1.7E-30 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02005 d39da3320a7d7d5ba43e166b9cb55ae9 530 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 381 401 1.7E-30 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02005 d39da3320a7d7d5ba43e166b9cb55ae9 530 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 355 376 1.7E-30 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04465 e42eeb386841a0291648dbe6e27cb2fa 359 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 143 163 3.9E-34 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04465 e42eeb386841a0291648dbe6e27cb2fa 359 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 117 138 3.9E-34 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04465 e42eeb386841a0291648dbe6e27cb2fa 359 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 293 314 3.9E-34 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04465 e42eeb386841a0291648dbe6e27cb2fa 359 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 174 195 3.9E-34 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04465 e42eeb386841a0291648dbe6e27cb2fa 359 Pfam PF01856 Helicobacter outer membrane protein 128 359 2.5E-61 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03245 83c0b0e9aff18a760b26594a95d97818 242 Pfam PF02754 Cysteine-rich domain 3 85 2.7E-13 T 13-10-2018 IPR004017 Cysteine-rich domain HCD_03245 83c0b0e9aff18a760b26594a95d97818 242 Pfam PF02754 Cysteine-rich domain 132 216 2.1E-17 T 13-10-2018 IPR004017 Cysteine-rich domain HCD_02600 628964837d88717ad0be32f6a4231b35 247 Pfam PF05211 Neuraminyllactose-binding hemagglutinin precursor (NLBH) 4 247 2.1E-79 T 13-10-2018 IPR007876 Neuraminyllactose-binding hemagglutinin GO:0009279 HCD_02600 628964837d88717ad0be32f6a4231b35 247 SUPERFAMILY SSF159594 30 247 9.42E-67 T 13-10-2018 HCD_02600 628964837d88717ad0be32f6a4231b35 247 Gene3D G3DSA:3.30.160.180 55 247 7.9E-69 T 13-10-2018 IPR038531 Neuraminyllactose-binding hemagglutinin superfamily HCD_01125 d7fd8e409162d92ee67b5c717ab926a8 344 Pfam PF03601 Conserved hypothetical protein 698 12 325 6.6E-87 T 13-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 HCD_01125 d7fd8e409162d92ee67b5c717ab926a8 344 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 11 339 6.9E-70 T 13-10-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 HCD_05830 cd59295688c363d74b0204a2849cc1f4 463 Pfam PF02521 Putative outer membrane protein 15 460 7.8E-137 T 13-10-2018 IPR003678 Putative outer membrane protein HCD_00455 094f863be46fa5f8bde97e443fc1a672 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 7 95 6.7E-25 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like HCD_00455 094f863be46fa5f8bde97e443fc1a672 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 19.927 T 13-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 HCD_02280 247cf74fb6765da27d1e03d6c0d13fe8 181 Gene3D G3DSA:3.40.50.1820 14 178 1.9E-5 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold HCD_02280 247cf74fb6765da27d1e03d6c0d13fe8 181 SUPERFAMILY SSF53474 25 177 3.87E-8 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold HCD_03465 c214a37f08094a601573dfbc3b8c47db 527 Pfam PF01856 Helicobacter outer membrane protein 362 527 4.2E-38 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03465 c214a37f08094a601573dfbc3b8c47db 527 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 400 421 1.7E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03465 c214a37f08094a601573dfbc3b8c47db 527 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 351 372 1.7E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03465 c214a37f08094a601573dfbc3b8c47db 527 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 377 397 1.7E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03465 c214a37f08094a601573dfbc3b8c47db 527 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 487 508 1.7E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04280 b4f704e8f1e774bde4b94e15a9ad2e78 246 Pfam PF03741 Integral membrane protein TerC family 21 209 4.6E-48 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 HCD_02590 dc8eb4916560daa4bf7c5fcfde02d911 338 SUPERFAMILY SSF161098 132 320 4.32E-19 T 13-10-2018 IPR035906 MetI-like superfamily HCD_02590 dc8eb4916560daa4bf7c5fcfde02d911 338 Gene3D G3DSA:1.10.3720.10 127 332 8.7E-18 T 13-10-2018 IPR035906 MetI-like superfamily HCD_02590 dc8eb4916560daa4bf7c5fcfde02d911 338 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 155 336 5.9E-27 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 HCD_02590 dc8eb4916560daa4bf7c5fcfde02d911 338 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 10 40 9.8E-7 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain HCD_04400 bf04b927912c361450f418ea2e1f8d16 89 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 18 78 5.0E-27 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 HCD_04400 bf04b927912c361450f418ea2e1f8d16 89 SUPERFAMILY SSF117916 3 81 5.89E-23 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily HCD_04400 bf04b927912c361450f418ea2e1f8d16 89 Gene3D G3DSA:3.30.300.130 3 87 5.5E-23 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily HCD_04400 bf04b927912c361450f418ea2e1f8d16 89 Pfam PF01106 NifU-like domain 15 78 1.2E-23 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 HCD_08615 7c328bf2eaa6fe96258bf37313d3554d 337 SMART SM01126 142 297 1.2E-20 T 13-10-2018 IPR024445 ISXO2-like transposase domain HCD_08615 7c328bf2eaa6fe96258bf37313d3554d 337 Pfam PF12762 ISXO2-like transposase domain 143 293 1.4E-13 T 13-10-2018 IPR024445 ISXO2-like transposase domain HCD_05295 8094543695b81759519302e904b219e2 475 SUPERFAMILY SSF55931 4 293 6.54E-119 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 HCD_05295 8094543695b81759519302e904b219e2 475 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 474 36.935 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 HCD_05295 8094543695b81759519302e904b219e2 475 SUPERFAMILY SSF89095 296 399 8.24E-23 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 HCD_05295 8094543695b81759519302e904b219e2 475 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 1 474 1.6E-197 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 HCD_05295 8094543695b81759519302e904b219e2 475 SMART SM00845 327 473 3.0E-60 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 HCD_05295 8094543695b81759519302e904b219e2 475 Pfam PF02637 GatB domain 327 473 1.3E-42 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 HCD_05295 8094543695b81759519302e904b219e2 475 Pfam PF02934 GatB/GatE catalytic domain 6 288 1.1E-112 T 13-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 HCD_05295 8094543695b81759519302e904b219e2 475 Gene3D G3DSA:1.10.10.410 414 475 1.2E-22 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal HCD_05295 8094543695b81759519302e904b219e2 475 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 141 155 - T 13-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 HCD_05295 8094543695b81759519302e904b219e2 475 Gene3D G3DSA:1.10.150.380 296 413 9.7E-25 T 13-10-2018 HCD_06400 8e5ca39fdadeb936e35ea275352ba54b 235 SUPERFAMILY SSF81901 23 232 1.83E-24 T 13-10-2018 HCD_06400 8e5ca39fdadeb936e35ea275352ba54b 235 Pfam PF08238 Sel1 repeat 94 116 0.96 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06400 8e5ca39fdadeb936e35ea275352ba54b 235 Pfam PF08238 Sel1 repeat 54 79 0.03 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06400 8e5ca39fdadeb936e35ea275352ba54b 235 Pfam PF08238 Sel1 repeat 196 225 0.014 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06400 8e5ca39fdadeb936e35ea275352ba54b 235 Gene3D G3DSA:1.25.40.10 153 235 2.5E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_06400 8e5ca39fdadeb936e35ea275352ba54b 235 Gene3D G3DSA:1.25.40.10 14 135 1.9E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_06400 8e5ca39fdadeb936e35ea275352ba54b 235 SMART SM00671 193 228 0.007 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06400 8e5ca39fdadeb936e35ea275352ba54b 235 SMART SM00671 88 123 1.3 T 13-10-2018 IPR006597 Sel1-like repeat HCD_06400 8e5ca39fdadeb936e35ea275352ba54b 235 SMART SM00671 49 84 0.0044 T 13-10-2018 IPR006597 Sel1-like repeat HCD_05470 6fbbd2031f3105743cdbea6e5cebac3f 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 402 429 1.2E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 HCD_05470 6fbbd2031f3105743cdbea6e5cebac3f 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 325 354 1.2E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 HCD_05470 6fbbd2031f3105743cdbea6e5cebac3f 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 431 460 1.2E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 HCD_05470 6fbbd2031f3105743cdbea6e5cebac3f 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 17 42 1.2E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 HCD_05470 6fbbd2031f3105743cdbea6e5cebac3f 566 SMART SM00283 304 565 1.1E-36 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_05470 6fbbd2031f3105743cdbea6e5cebac3f 566 Gene3D G3DSA:3.30.450.20 33 213 1.1E-35 T 13-10-2018 HCD_05470 6fbbd2031f3105743cdbea6e5cebac3f 566 Pfam PF17200 Single Cache domain 2 67 196 7.3E-17 T 13-10-2018 IPR033480 Single Cache domain 2 HCD_05470 6fbbd2031f3105743cdbea6e5cebac3f 566 SUPERFAMILY SSF58104 258 565 1.83E-56 T 13-10-2018 HCD_05470 6fbbd2031f3105743cdbea6e5cebac3f 566 Gene3D G3DSA:1.10.287.950 234 566 4.8E-58 T 13-10-2018 HCD_05470 6fbbd2031f3105743cdbea6e5cebac3f 566 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 381 530 1.2E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_04835 82592e50e9375db6ba78498998c0504b 250 Gene3D G3DSA:2.40.10.350 160 235 1.5E-10 T 13-10-2018 HCD_04835 82592e50e9375db6ba78498998c0504b 250 Pfam PF04085 rod shape-determining protein MreC 156 243 3.3E-10 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 HCD_05075 cc1341b21e249e01088bbc505246f77c 348 Gene3D G3DSA:3.10.310.30 223 348 4.9E-11 T 13-10-2018 HCD_05075 cc1341b21e249e01088bbc505246f77c 348 SUPERFAMILY SSF64182 6 345 3.27E-15 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily HCD_06145 97ce64da27c3be00c3334b1b557e5ae8 163 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 25 151 4.3E-23 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 HCD_06145 97ce64da27c3be00c3334b1b557e5ae8 163 SUPERFAMILY SSF55083 22 151 5.1E-38 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 HCD_06145 97ce64da27c3be00c3334b1b557e5ae8 163 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 110 121 - T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 HCD_06145 97ce64da27c3be00c3334b1b557e5ae8 163 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 24 151 3.9E-35 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 HCD_06145 97ce64da27c3be00c3334b1b557e5ae8 163 Gene3D G3DSA:3.30.70.560 19 159 1.3E-35 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 HCD_05425 a99739843bd1ffe41a919c27a445c9dc 293 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 1 281 3.0E-103 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 HCD_05425 a99739843bd1ffe41a919c27a445c9dc 293 SUPERFAMILY SSF53790 1 236 2.36E-59 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 HCD_05425 a99739843bd1ffe41a919c27a445c9dc 293 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 1 238 33.704 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 HCD_05425 a99739843bd1ffe41a919c27a445c9dc 293 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 1 218 1.3E-25 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 HCD_05425 a99739843bd1ffe41a919c27a445c9dc 293 Gene3D G3DSA:3.40.1010.10 1 122 1.8E-32 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 HCD_05425 a99739843bd1ffe41a919c27a445c9dc 293 PIRSF PIRSF005917 1 286 3.9E-77 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 HCD_05425 a99739843bd1ffe41a919c27a445c9dc 293 Gene3D G3DSA:3.30.950.10 123 241 7.4E-31 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 HCD_02490 c0ee2b846b63c5b684ae6d90a8c5ad72 844 SUPERFAMILY SSF52540 28 612 8.44E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02490 c0ee2b846b63c5b684ae6d90a8c5ad72 844 Pfam PF13175 AAA ATPase domain 38 591 1.5E-8 T 13-10-2018 HCD_02490 c0ee2b846b63c5b684ae6d90a8c5ad72 844 Gene3D G3DSA:3.40.50.300 306 612 3.2E-11 T 13-10-2018 HCD_03800 c5da5f05f673757d5c444789a66e968a 369 SUPERFAMILY SSF52540 1 325 2.34E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_03800 c5da5f05f673757d5c444789a66e968a 369 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 24 317 7.2E-14 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 HCD_03800 c5da5f05f673757d5c444789a66e968a 369 Gene3D G3DSA:3.40.50.300 1 332 1.7E-17 T 13-10-2018 HCD_05620 eceb63cb972daf41f6171415ce6f0653 260 Gene3D G3DSA:3.30.70.20 192 259 3.6E-7 T 13-10-2018 HCD_05620 eceb63cb972daf41f6171415ce6f0653 260 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 201 212 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_05620 eceb63cb972daf41f6171415ce6f0653 260 TIGRFAM TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family 3 250 4.0E-89 T 13-10-2018 IPR011886 Ferredoxin-type protein, NapH/MauN family HCD_05620 eceb63cb972daf41f6171415ce6f0653 260 SUPERFAMILY SSF54862 69 256 4.19E-20 T 13-10-2018 HCD_05620 eceb63cb972daf41f6171415ce6f0653 260 Pfam PF12801 4Fe-4S binding domain 152 191 4.3E-4 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_05620 eceb63cb972daf41f6171415ce6f0653 260 Pfam PF12801 4Fe-4S binding domain 57 98 2.3E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_05620 eceb63cb972daf41f6171415ce6f0653 260 Pfam PF13237 4Fe-4S dicluster domain 194 242 5.4E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_07765 f23c3f22486d33d6d2d071051ba9c78c 316 SUPERFAMILY SSF53335 182 301 9.14E-8 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_07765 f23c3f22486d33d6d2d071051ba9c78c 316 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 45 150 1.2E-26 T 13-10-2018 IPR029464 Type I restriction enzyme R protein, N-terminal domain HCD_08145 5def6a3f39af6a36d732f576635fa554 192 Gene3D G3DSA:2.160.20.70 75 182 4.7E-13 T 13-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 HCD_08145 5def6a3f39af6a36d732f576635fa554 192 SUPERFAMILY SSF63848 91 190 5.75E-14 T 13-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 HCD_08145 5def6a3f39af6a36d732f576635fa554 192 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 93 182 2.0E-12 T 13-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 HCD_04380 fd93b003d347e74f77977424fb3a3ce1 325 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 39 277 1.4E-12 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain HCD_04380 fd93b003d347e74f77977424fb3a3ce1 325 Gene3D G3DSA:2.40.50.100 42 234 1.3E-26 T 13-10-2018 HCD_04380 fd93b003d347e74f77977424fb3a3ce1 325 Gene3D G3DSA:1.10.287.470 76 194 1.3E-26 T 13-10-2018 HCD_04380 fd93b003d347e74f77977424fb3a3ce1 325 SUPERFAMILY SSF111369 41 99 9.29E-7 T 13-10-2018 HCD_04380 fd93b003d347e74f77977424fb3a3ce1 325 Gene3D G3DSA:2.40.30.170 36 282 1.3E-26 T 13-10-2018 HCD_04380 fd93b003d347e74f77977424fb3a3ce1 325 SUPERFAMILY SSF56954 78 171 4.84E-5 T 13-10-2018 HCD_04380 fd93b003d347e74f77977424fb3a3ce1 325 SUPERFAMILY SSF111369 115 251 9.15E-5 T 13-10-2018 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 Pfam PF01336 OB-fold nucleic acid binding domain 18 98 7.4E-14 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 Gene3D G3DSA:2.40.50.140 1 104 3.0E-31 T 13-10-2018 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 574 2.4E-258 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 1.1E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 PRINTS PR01042 Aspartyl-tRNA synthetase signature 510 524 1.1E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 PRINTS PR01042 Aspartyl-tRNA synthetase signature 466 482 1.1E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 1.1E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 Gene3D G3DSA:3.30.930.10 116 574 6.7E-191 T 13-10-2018 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 SUPERFAMILY SSF50249 1 104 2.1E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 Pfam PF02938 GAD domain 314 403 1.1E-30 T 13-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 Pfam PF00152 tRNA synthetases class II (D, K and N) 118 550 7.5E-112 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 576 32.782 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 SUPERFAMILY SSF55261 288 417 1.85E-35 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 Gene3D G3DSA:3.30.1360.30 271 417 6.7E-191 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 HCD_05360 5daca7e12d69db2a69dfa1d9f8a6d834 579 SUPERFAMILY SSF55681 110 577 1.99E-108 T 13-10-2018 HCD_02545 d388dfc3047820b53d8d97a8181eadc0 341 Pfam PF00268 Ribonucleotide reductase, small chain 31 306 4.3E-71 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_02545 d388dfc3047820b53d8d97a8181eadc0 341 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 119 135 - T 13-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_02545 d388dfc3047820b53d8d97a8181eadc0 341 Gene3D G3DSA:1.10.620.20 2 333 6.8E-93 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 HCD_02545 d388dfc3047820b53d8d97a8181eadc0 341 PIRSF PIRSF000355 1 341 2.1E-125 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_02545 d388dfc3047820b53d8d97a8181eadc0 341 SUPERFAMILY SSF47240 6 333 1.02E-88 T 13-10-2018 IPR009078 Ferritin-like superfamily HCD_04190 b42aa2ebdb8a0ede87b30040ef598403 181 Pfam PF04367 Protein of unknown function (DUF502) 58 150 6.3E-19 T 13-10-2018 IPR007462 Protein of unknown function DUF502 HCD_01810 56ee00311a08e86d95053a221290f819 358 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 2 355 3.7E-133 T 13-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 HCD_01810 56ee00311a08e86d95053a221290f819 358 Pfam PF02684 Lipid-A-disaccharide synthetase 4 348 1.5E-113 T 13-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 HCD_01810 56ee00311a08e86d95053a221290f819 358 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 1 358 32.63 T 13-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 HCD_01810 56ee00311a08e86d95053a221290f819 358 SUPERFAMILY SSF53756 48 264 2.04E-6 T 13-10-2018 HCD_07405 16abee0a4f2b1928487b0f5abf3e5f1d 320 Gene3D G3DSA:3.40.50.150 32 211 2.3E-5 T 13-10-2018 HCD_07405 16abee0a4f2b1928487b0f5abf3e5f1d 320 SUPERFAMILY SSF53335 21 205 7.2E-9 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_06580 2e12826bd2c986ecde14e50e31e112c0 711 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 555 575 5.9E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06580 2e12826bd2c986ecde14e50e31e112c0 711 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 529 550 5.9E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06580 2e12826bd2c986ecde14e50e31e112c0 711 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 671 692 5.9E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06580 2e12826bd2c986ecde14e50e31e112c0 711 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 576 597 5.9E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06580 2e12826bd2c986ecde14e50e31e112c0 711 Pfam PF01856 Helicobacter outer membrane protein 540 711 7.5E-50 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01830 83a48b2c80a99c14c958b3e866d6cb40 109 Pfam PF03831 PhnA domain 43 109 9.2E-30 T 13-10-2018 IPR013988 PhnA protein, C-terminal HCD_01830 83a48b2c80a99c14c958b3e866d6cb40 109 Pfam PF08274 PhnA Zinc-Ribbon 4 32 9.5E-13 T 13-10-2018 IPR013987 PhnA protein, N-terminal HCD_01830 83a48b2c80a99c14c958b3e866d6cb40 109 SUPERFAMILY SSF57783 3 38 4.42E-14 T 13-10-2018 HCD_01830 83a48b2c80a99c14c958b3e866d6cb40 109 Gene3D G3DSA:2.30.30.40 41 109 2.4E-30 T 13-10-2018 HCD_01830 83a48b2c80a99c14c958b3e866d6cb40 109 SUPERFAMILY SSF82057 38 109 1.1E-25 T 13-10-2018 HCD_01830 83a48b2c80a99c14c958b3e866d6cb40 109 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 3 109 3.8E-55 T 13-10-2018 IPR004624 PhnA protein HCD_01830 83a48b2c80a99c14c958b3e866d6cb40 109 Gene3D G3DSA:2.20.25.10 1 40 9.0E-19 T 13-10-2018 HCD_02935 6f13e6568428514f0273f0277d5cabd8 746 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 584 605 9.9E-9 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02935 6f13e6568428514f0273f0277d5cabd8 746 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 608 628 9.9E-9 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02935 6f13e6568428514f0273f0277d5cabd8 746 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 698 719 9.9E-9 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02935 6f13e6568428514f0273f0277d5cabd8 746 Pfam PF01856 Helicobacter outer membrane protein 596 746 1.5E-8 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01985 5b10eaed32da2858d743649f78f887c9 450 PIRSF PIRSF006060 51 379 8.9E-15 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 HCD_01985 5b10eaed32da2858d743649f78f887c9 450 PIRSF PIRSF006060 389 438 240.0 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 HCD_01985 5b10eaed32da2858d743649f78f887c9 450 PRINTS PR00175 Sodium/alanine symporter signature 180 198 5.4E-50 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 HCD_01985 5b10eaed32da2858d743649f78f887c9 450 PRINTS PR00175 Sodium/alanine symporter signature 208 227 5.4E-50 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 HCD_01985 5b10eaed32da2858d743649f78f887c9 450 PRINTS PR00175 Sodium/alanine symporter signature 303 321 5.4E-50 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 HCD_01985 5b10eaed32da2858d743649f78f887c9 450 PRINTS PR00175 Sodium/alanine symporter signature 353 375 5.4E-50 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 HCD_01985 5b10eaed32da2858d743649f78f887c9 450 PRINTS PR00175 Sodium/alanine symporter signature 90 112 5.4E-50 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 HCD_01985 5b10eaed32da2858d743649f78f887c9 450 PRINTS PR00175 Sodium/alanine symporter signature 412 432 5.4E-50 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 HCD_01985 5b10eaed32da2858d743649f78f887c9 450 Gene3D G3DSA:1.20.1740.10 56 445 1.5E-11 T 13-10-2018 HCD_01985 5b10eaed32da2858d743649f78f887c9 450 Pfam PF01235 Sodium:alanine symporter family 51 448 9.2E-133 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 HCD_01985 5b10eaed32da2858d743649f78f887c9 450 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 443 6.8E-173 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 HCD_02810 2fdb6359de903d437f2e95aaa19a033b 194 SUPERFAMILY SSF50475 10 167 1.79E-20 T 13-10-2018 HCD_02810 2fdb6359de903d437f2e95aaa19a033b 194 Gene3D G3DSA:2.30.110.10 2 186 1.4E-37 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 HCD_02810 2fdb6359de903d437f2e95aaa19a033b 194 Pfam PF01613 Flavin reductase like domain 22 176 1.9E-10 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 HCD_05125 4c18e30905226e85a76a004b9b6d83d2 383 Gene3D G3DSA:1.10.8.60 309 383 1.5E-18 T 13-10-2018 HCD_05125 4c18e30905226e85a76a004b9b6d83d2 383 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 162 175 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 HCD_05125 4c18e30905226e85a76a004b9b6d83d2 383 SMART SM00382 158 305 2.4E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_05125 4c18e30905226e85a76a004b9b6d83d2 383 SUPERFAMILY SSF52540 141 379 9.96E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_05125 4c18e30905226e85a76a004b9b6d83d2 383 Pfam PF00072 Response regulator receiver domain 3 109 6.3E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_05125 4c18e30905226e85a76a004b9b6d83d2 383 Pfam PF00158 Sigma-54 interaction domain 140 304 5.9E-67 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 HCD_05125 4c18e30905226e85a76a004b9b6d83d2 383 SUPERFAMILY SSF52172 1 183 1.42E-29 T 13-10-2018 IPR011006 CheY-like superfamily HCD_05125 4c18e30905226e85a76a004b9b6d83d2 383 Gene3D G3DSA:3.40.50.300 125 308 3.5E-62 T 13-10-2018 HCD_05125 4c18e30905226e85a76a004b9b6d83d2 383 Gene3D G3DSA:3.40.50.2300 1 123 4.4E-26 T 13-10-2018 HCD_05125 4c18e30905226e85a76a004b9b6d83d2 383 SMART SM00448 1 109 3.9E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_05125 4c18e30905226e85a76a004b9b6d83d2 383 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 224 239 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 HCD_02715 8826460b0c1dd49ef38cc649b3979059 230 Pfam PF13707 RloB-like protein 29 223 7.2E-30 T 13-10-2018 IPR025591 RloB-like protein HCD_02035 0b7f04e327823131df8a9ebe90dd521c 204 Pfam PF13114 RecO N terminal 1 71 2.2E-33 T 13-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal HCD_05055 936fdd724a2a1bbff921a906cf26fcfd 106 SUPERFAMILY SSF47413 33 92 7.31E-5 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 HCD_05055 936fdd724a2a1bbff921a906cf26fcfd 106 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 6 91 1.2E-21 T 13-10-2018 IPR014057 Uncharacterized protein HI1420 HCD_05095 144a9de30bd1efa3fef22493604c9c0e 98 Pfam PF06300 Tsp45I type II restriction enzyme 1 97 1.1E-42 T 13-10-2018 IPR010443 Restriction endonuclease, type II, Tsp45I HCD_01325 12df4b8d1e9fc78faab4de83a800aa9a 78 SMART SM00899 1 74 1.9E-10 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 HCD_01325 12df4b8d1e9fc78faab4de83a800aa9a 78 Gene3D G3DSA:2.30.30.90 1 77 4.8E-12 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain HCD_01325 12df4b8d1e9fc78faab4de83a800aa9a 78 SUPERFAMILY SSF50037 3 75 6.1E-11 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal HCD_01325 12df4b8d1e9fc78faab4de83a800aa9a 78 Pfam PF04023 FeoA domain 1 74 2.4E-12 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 Gene3D G3DSA:3.40.50.880 1 190 1.2E-51 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 PRINTS PR00097 Anthranilate synthase component II signature 79 90 2.0E-29 T 13-10-2018 HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 PRINTS PR00097 Anthranilate synthase component II signature 52 61 2.0E-29 T 13-10-2018 HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 PRINTS PR00097 Anthranilate synthase component II signature 124 136 2.0E-29 T 13-10-2018 HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 PRINTS PR00097 Anthranilate synthase component II signature 3 17 2.0E-29 T 13-10-2018 HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 PRINTS PR00097 Anthranilate synthase component II signature 166 179 2.0E-29 T 13-10-2018 HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 PRINTS PR00097 Anthranilate synthase component II signature 104 112 2.0E-29 T 13-10-2018 HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 Pfam PF00117 Glutamine amidotransferase class-I 5 186 6.1E-45 T 13-10-2018 IPR017926 Glutamine amidotransferase HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 SUPERFAMILY SSF52317 1 190 1.08E-43 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 4.3E-12 T 13-10-2018 HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 4.3E-12 T 13-10-2018 HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 4.3E-12 T 13-10-2018 HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 3 185 2.0E-47 T 13-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 5.0E-6 T 13-10-2018 HCD_00545 8e5fe6c4c18aff2c7cec24569b1e1123 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 5.0E-6 T 13-10-2018 HCD_03820 d4c3fc75bd07ca9d87ac700289795572 412 Pfam PF00033 Cytochrome b/b6/petB 29 215 3.8E-58 T 13-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 HCD_03820 d4c3fc75bd07ca9d87ac700289795572 412 Gene3D G3DSA:1.20.810.10 1 411 3.3E-130 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 HCD_03820 d4c3fc75bd07ca9d87ac700289795572 412 SUPERFAMILY SSF81648 241 381 2.62E-38 T 13-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 HCD_03820 d4c3fc75bd07ca9d87ac700289795572 412 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 288 389 4.3E-28 T 13-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 HCD_03820 d4c3fc75bd07ca9d87ac700289795572 412 SUPERFAMILY SSF81342 13 289 2.35E-82 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 HCD_07255 3088250b229b5909f59d8b732634b37e 389 PIRSF PIRSF003085 3 389 1.2E-126 T 13-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 HCD_07255 3088250b229b5909f59d8b732634b37e 389 SUPERFAMILY SSF53335 2 328 5.78E-81 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_07255 3088250b229b5909f59d8b732634b37e 389 Pfam PF02353 Mycolic acid cyclopropane synthetase 103 370 5.2E-114 T 13-10-2018 HCD_07255 3088250b229b5909f59d8b732634b37e 389 Gene3D G3DSA:3.40.50.150 109 377 1.5E-97 T 13-10-2018 HCD_03685 1f88d948310a0ba4a220690d469e5660 239 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 193 214 4.9E-22 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03685 1f88d948310a0ba4a220690d469e5660 239 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 116 137 4.9E-22 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03685 1f88d948310a0ba4a220690d469e5660 239 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 60 81 4.9E-22 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03685 1f88d948310a0ba4a220690d469e5660 239 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 86 106 4.9E-22 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03685 1f88d948310a0ba4a220690d469e5660 239 Pfam PF01856 Helicobacter outer membrane protein 72 234 7.1E-35 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00535 c5f0717e2d8d6fa645e342841c6c717a 224 SUPERFAMILY SSF53335 4 220 4.76E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_00535 c5f0717e2d8d6fa645e342841c6c717a 224 Gene3D G3DSA:3.40.50.150 1 86 5.9E-14 T 13-10-2018 HCD_00535 c5f0717e2d8d6fa645e342841c6c717a 224 Pfam PF00145 C-5 cytosine-specific DNA methylase 5 217 3.2E-27 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_00535 c5f0717e2d8d6fa645e342841c6c717a 224 Gene3D G3DSA:3.90.120.10 87 209 1.9E-22 T 13-10-2018 HCD_08570 74b6829cfc9e02398b10e5ab85bc01ce 230 Gene3D G3DSA:3.40.50.150 1 230 2.1E-79 T 13-10-2018 HCD_08570 74b6829cfc9e02398b10e5ab85bc01ce 230 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 26 32 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_08570 74b6829cfc9e02398b10e5ab85bc01ce 230 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 22 36 6.8E-32 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_08570 74b6829cfc9e02398b10e5ab85bc01ce 230 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 168 185 6.8E-32 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_08570 74b6829cfc9e02398b10e5ab85bc01ce 230 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 65 85 6.8E-32 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_08570 74b6829cfc9e02398b10e5ab85bc01ce 230 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 187 205 6.8E-32 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_08570 74b6829cfc9e02398b10e5ab85bc01ce 230 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 210 230 6.8E-32 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_08570 74b6829cfc9e02398b10e5ab85bc01ce 230 SUPERFAMILY SSF53335 2 230 9.21E-55 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_08570 74b6829cfc9e02398b10e5ab85bc01ce 230 Pfam PF01555 DNA methylase 23 227 4.6E-42 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 HCD_05530 d511eb06ee4b349bd3b10d07a276d611 402 Gene3D G3DSA:2.70.70.10 227 359 3.1E-94 T 13-10-2018 IPR011055 Duplicated hybrid motif HCD_05530 d511eb06ee4b349bd3b10d07a276d611 402 Pfam PF01551 Peptidase family M23 256 352 1.9E-27 T 13-10-2018 IPR016047 Peptidase M23 HCD_05530 d511eb06ee4b349bd3b10d07a276d611 402 SUPERFAMILY SSF51261 107 355 9.94E-56 T 13-10-2018 IPR011055 Duplicated hybrid motif HCD_05530 d511eb06ee4b349bd3b10d07a276d611 402 Gene3D G3DSA:3.10.450.350 134 382 3.1E-94 T 13-10-2018 HCD_04435 478cfc7c26ecae98e9e50eb4b4e109b5 355 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 349 2.2E-38 T 13-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 HCD_08185 ad444bd68ce08f24adf344f8ab83684a 53 SUPERFAMILY SSF143422 1 40 9.68E-6 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_08185 ad444bd68ce08f24adf344f8ab83684a 53 Pfam PF01797 Transposase IS200 like 1 40 1.9E-6 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 HCD_08185 ad444bd68ce08f24adf344f8ab83684a 53 Gene3D G3DSA:3.30.70.1290 1 45 3.8E-5 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 Gene3D G3DSA:3.40.50.1000 412 681 2.5E-66 T 13-10-2018 IPR023214 HAD superfamily HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 Pfam PF00403 Heavy-metal-associated domain 5 65 8.3E-12 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00943 Copper-transporting ATPase signature 702 716 3.9E-107 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00943 Copper-transporting ATPase signature 47 67 3.9E-107 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00943 Copper-transporting ATPase signature 195 214 3.9E-107 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00943 Copper-transporting ATPase signature 18 32 3.9E-107 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00943 Copper-transporting ATPase signature 348 362 3.9E-107 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00943 Copper-transporting ATPase signature 414 429 3.9E-107 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00943 Copper-transporting ATPase signature 143 162 3.9E-107 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00943 Copper-transporting ATPase signature 606 623 3.9E-107 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00943 Copper-transporting ATPase signature 663 677 3.9E-107 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00943 Copper-transporting ATPase signature 215 233 3.9E-107 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00943 Copper-transporting ATPase signature 123 141 3.9E-107 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 158 737 3.5E-180 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 197 720 6.4E-79 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 SUPERFAMILY SSF55008 2 67 7.59E-16 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 Gene3D G3DSA:3.30.70.100 1 67 3.2E-16 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 Gene3D G3DSA:3.40.1110.10 442 561 2.5E-66 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 140 738 4.2E-179 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 SUPERFAMILY SSF81665 186 716 2.48E-9 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 433 439 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 431 445 2.1E-19 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 275 289 2.1E-19 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 576 586 2.1E-19 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 629 648 2.1E-19 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 652 664 2.1E-19 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 SUPERFAMILY SSF56784 429 734 6.95E-48 T 13-10-2018 IPR036412 HAD-like superfamily HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 Pfam PF00702 haloacid dehalogenase-like hydrolase 428 641 4.5E-39 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 SUPERFAMILY SSF81653 228 325 6.02E-23 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 Gene3D G3DSA:2.70.150.20 219 330 5.8E-35 T 13-10-2018 HCD_06355 10d502ee076abbbe39cf7e458e3df280 745 Pfam PF00122 E1-E2 ATPase 227 408 8.9E-50 T 13-10-2018 HCD_01910 917ff973bf87982fac44c4031f368def 344 SUPERFAMILY SSF53335 15 287 7.83E-34 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_01910 917ff973bf87982fac44c4031f368def 344 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 16 288 4.7E-32 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_01910 917ff973bf87982fac44c4031f368def 344 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 16 32 8.2E-8 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_01910 917ff973bf87982fac44c4031f368def 344 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 40 54 8.2E-8 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_01910 917ff973bf87982fac44c4031f368def 344 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 212 224 8.2E-8 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_01910 917ff973bf87982fac44c4031f368def 344 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 215 221 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 79 104 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 Hamap MF_01576 Bifunctional protein FolD [folD]. 6 286 37.068 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 SUPERFAMILY SSF53223 7 125 6.33E-39 T 13-10-2018 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 78 105 2.6E-83 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 207 236 2.6E-83 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 259 277 2.6E-83 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 113 134 2.6E-83 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 242 258 2.6E-83 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 158 178 2.6E-83 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 37 59 2.6E-83 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 SUPERFAMILY SSF51735 126 283 3.07E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 Gene3D G3DSA:3.40.50.720 9 262 9.9E-108 T 13-10-2018 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 8 124 3.0E-40 T 13-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 Gene3D G3DSA:3.40.50.10860 11 279 9.9E-108 T 13-10-2018 HCD_01375 e71d17e4c19a56a502811a2033ecd9b4 287 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 127 285 1.6E-66 T 13-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 HCD_06855 abc3913bc93b1f64911e2a7ef53b0bd1 223 Gene3D G3DSA:3.40.50.300 2 223 1.3E-56 T 13-10-2018 HCD_06855 abc3913bc93b1f64911e2a7ef53b0bd1 223 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_06855 abc3913bc93b1f64911e2a7ef53b0bd1 223 SUPERFAMILY SSF52540 4 222 4.8E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_06855 abc3913bc93b1f64911e2a7ef53b0bd1 223 Pfam PF00005 ABC transporter 22 168 6.2E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_06855 abc3913bc93b1f64911e2a7ef53b0bd1 223 SMART SM00382 30 218 1.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_03080 9eb697cd55e7e570d27f3c4d10ceaa0d 238 SUPERFAMILY SSF75708 54 236 9.02E-30 T 13-10-2018 HCD_03400 fa576ba0cab85d3a74720ab08c52eb94 462 Pfam PF13729 F plasmid transfer operon, TraF, protein 54 372 6.6E-20 T 13-10-2018 IPR032811 Putative conjugal transfer protein TraF-related HCD_06120 a5086de74e60e25e64204e4b6cf8d3ef 354 PIRSF PIRSF002888 1 341 3.7E-106 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 HCD_06120 a5086de74e60e25e64204e4b6cf8d3ef 354 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 254 323 1.2E-13 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) HCD_06120 a5086de74e60e25e64204e4b6cf8d3ef 354 Gene3D G3DSA:2.30.330.10 239 334 2.1E-7 T 13-10-2018 IPR036429 SpoA-like superfamily HCD_06120 a5086de74e60e25e64204e4b6cf8d3ef 354 PRINTS PR00955 Flagellar motor switch protein FliM signature 91 107 3.8E-30 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 HCD_06120 a5086de74e60e25e64204e4b6cf8d3ef 354 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 3.8E-30 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 HCD_06120 a5086de74e60e25e64204e4b6cf8d3ef 354 PRINTS PR00955 Flagellar motor switch protein FliM signature 2 15 3.8E-30 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 HCD_06120 a5086de74e60e25e64204e4b6cf8d3ef 354 PRINTS PR00955 Flagellar motor switch protein FliM signature 116 135 3.8E-30 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 HCD_06120 a5086de74e60e25e64204e4b6cf8d3ef 354 SUPERFAMILY SSF101801 250 327 1.96E-13 T 13-10-2018 IPR036429 SpoA-like superfamily HCD_06120 a5086de74e60e25e64204e4b6cf8d3ef 354 Gene3D G3DSA:3.40.1550.10 48 238 2.6E-58 T 13-10-2018 IPR028976 CheC-like superfamily HCD_06120 a5086de74e60e25e64204e4b6cf8d3ef 354 Pfam PF02154 Flagellar motor switch protein FliM 40 230 1.1E-80 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 HCD_06120 a5086de74e60e25e64204e4b6cf8d3ef 354 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 3 323 1.4E-119 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 HCD_06120 a5086de74e60e25e64204e4b6cf8d3ef 354 SUPERFAMILY SSF103039 46 231 1.99E-23 T 13-10-2018 IPR028976 CheC-like superfamily HCD_06945 d520e921376e4bf982bdd281827cc139 201 Pfam PF12804 MobA-like NTP transferase domain 11 156 3.1E-13 T 13-10-2018 IPR025877 MobA-like NTP transferase HCD_06945 d520e921376e4bf982bdd281827cc139 201 SUPERFAMILY SSF53448 9 191 8.88E-18 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_06945 d520e921376e4bf982bdd281827cc139 201 Gene3D G3DSA:3.90.550.10 5 197 1.3E-30 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_06945 d520e921376e4bf982bdd281827cc139 201 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 7 191 18.831 T 13-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 HCD_01295 8f70c928bd8560e9f3c152632d66e612 186 Gene3D G3DSA:3.40.920.10 1 185 1.5E-57 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 HCD_01295 8f70c928bd8560e9f3c152632d66e612 186 SUPERFAMILY SSF53323 4 180 8.37E-34 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 HCD_01295 8f70c928bd8560e9f3c152632d66e612 186 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 11 174 4.3E-31 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 HCD_07585 4adb9c5b03f2afd4901511206287eaf0 582 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 80 204 3.1E-26 T 13-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 HCD_07585 4adb9c5b03f2afd4901511206287eaf0 582 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 328 566 4.4E-43 T 13-10-2018 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 HCD_07585 4adb9c5b03f2afd4901511206287eaf0 582 Gene3D G3DSA:3.40.50.300 330 562 8.2E-36 T 13-10-2018 HCD_07585 4adb9c5b03f2afd4901511206287eaf0 582 SUPERFAMILY SSF52540 59 554 1.89E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_06070 874ce7f77ae83ad87f6cb8dc9d9adee0 298 Pfam PF00072 Response regulator receiver domain 4 105 4.0E-6 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_06070 874ce7f77ae83ad87f6cb8dc9d9adee0 298 Gene3D G3DSA:3.40.50.2300 1 116 2.7E-16 T 13-10-2018 HCD_06070 874ce7f77ae83ad87f6cb8dc9d9adee0 298 SUPERFAMILY SSF52172 1 131 1.85E-15 T 13-10-2018 IPR011006 CheY-like superfamily HCD_06070 874ce7f77ae83ad87f6cb8dc9d9adee0 298 PIRSF PIRSF016788 1 298 9.4E-147 T 13-10-2018 IPR014483 Fis-like DNA-binding domain-containing signal transduction response regulator, predicted HCD_06070 874ce7f77ae83ad87f6cb8dc9d9adee0 298 SMART SM00448 1 105 1.0E-8 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_05855 943ba642fdd76205f0f4f0a5b4f298ae 809 Pfam PF00593 TonB dependent receptor 321 808 3.3E-26 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel HCD_05855 943ba642fdd76205f0f4f0a5b4f298ae 809 SUPERFAMILY SSF56935 61 809 1.83E-67 T 13-10-2018 HCD_05855 943ba642fdd76205f0f4f0a5b4f298ae 809 Gene3D G3DSA:2.170.130.10 55 162 2.2E-33 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily HCD_05855 943ba642fdd76205f0f4f0a5b4f298ae 809 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 156 3.8E-16 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain HCD_03705 b8e2293c1494646db2bb27ec5bd0a933 204 PIRSF PIRSF000498 1 200 9.0E-60 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 HCD_03705 b8e2293c1494646db2bb27ec5bd0a933 204 SUPERFAMILY SSF63380 84 187 4.34E-26 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel HCD_03705 b8e2293c1494646db2bb27ec5bd0a933 204 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 189 2.1E-70 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 HCD_03705 b8e2293c1494646db2bb27ec5bd0a933 204 SUPERFAMILY SSF63380 1 79 8.5E-13 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel HCD_03705 b8e2293c1494646db2bb27ec5bd0a933 204 Gene3D G3DSA:2.40.30.20 92 193 1.6E-24 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_03705 b8e2293c1494646db2bb27ec5bd0a933 204 Gene3D G3DSA:2.40.30.20 1 79 1.8E-13 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_03705 b8e2293c1494646db2bb27ec5bd0a933 204 Pfam PF00677 Lumazine binding domain 3 73 2.1E-11 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 HCD_03705 b8e2293c1494646db2bb27ec5bd0a933 204 Pfam PF00677 Lumazine binding domain 90 174 3.3E-18 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 HCD_03170 75d71765347f6f035b53051e3696b399 287 Hamap MF_00996 1,4-dihydroxy-6-naphtoate synthase [mqnD]. 1 267 36.067 T 13-10-2018 IPR030869 1,4-dihydroxy-6-naphtoate synthase GO:0009234|GO:0016829 HCD_03170 75d71765347f6f035b53051e3696b399 287 Gene3D G3DSA:3.40.190.10 4 260 9.9E-64 T 13-10-2018 HCD_03170 75d71765347f6f035b53051e3696b399 287 SUPERFAMILY SSF53850 2 265 3.53E-69 T 13-10-2018 HCD_03170 75d71765347f6f035b53051e3696b399 287 Gene3D G3DSA:3.40.190.10 81 174 9.9E-64 T 13-10-2018 HCD_03170 75d71765347f6f035b53051e3696b399 287 Pfam PF02621 Menaquinone biosynthesis 2 261 1.0E-72 T 13-10-2018 IPR003773 Menaquinone biosynthesis enzyme HCD_08175 680621c24eb75c7623df343fa189bba2 111 Gene3D G3DSA:3.30.300.20 1 110 5.4E-18 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta HCD_08175 680621c24eb75c7623df343fa189bba2 111 ProSitePatterns PS01319 Ribosome-binding factor A signature. 67 88 - T 13-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 HCD_08175 680621c24eb75c7623df343fa189bba2 111 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 2 106 2.1E-30 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 HCD_08175 680621c24eb75c7623df343fa189bba2 111 SUPERFAMILY SSF89919 5 95 5.23E-16 T 13-10-2018 IPR023799 Ribosome-binding factor A domain superfamily HCD_08175 680621c24eb75c7623df343fa189bba2 111 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 3 101 19.778 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 HCD_08175 680621c24eb75c7623df343fa189bba2 111 Pfam PF02033 Ribosome-binding factor A 5 101 3.1E-16 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 HCD_01645 393768af1bc8b5c415f9dbeb8ccd3c25 587 SUPERFAMILY SSF56935 30 568 8.55E-43 T 13-10-2018 HCD_01645 393768af1bc8b5c415f9dbeb8ccd3c25 587 Gene3D G3DSA:2.40.160.60 297 587 4.2E-22 T 13-10-2018 HCD_01645 393768af1bc8b5c415f9dbeb8ccd3c25 587 Gene3D G3DSA:2.40.160.60 133 293 3.5E-13 T 13-10-2018 HCD_01645 393768af1bc8b5c415f9dbeb8ccd3c25 587 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 28 548 1.6E-30 T 13-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) HCD_04230 75743a2d8192d50d3d313ce3b5cc28a7 359 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 31 37 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_04230 75743a2d8192d50d3d313ce3b5cc28a7 359 Gene3D G3DSA:3.40.50.150 6 256 9.0E-69 T 13-10-2018 HCD_04230 75743a2d8192d50d3d313ce3b5cc28a7 359 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 233 253 2.9E-37 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_04230 75743a2d8192d50d3d313ce3b5cc28a7 359 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 27 41 2.9E-37 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_04230 75743a2d8192d50d3d313ce3b5cc28a7 359 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 76 96 2.9E-37 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_04230 75743a2d8192d50d3d313ce3b5cc28a7 359 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 191 208 2.9E-37 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_04230 75743a2d8192d50d3d313ce3b5cc28a7 359 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 210 228 2.9E-37 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_04230 75743a2d8192d50d3d313ce3b5cc28a7 359 Pfam PF01555 DNA methylase 28 249 1.4E-57 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 HCD_04230 75743a2d8192d50d3d313ce3b5cc28a7 359 SUPERFAMILY SSF53335 6 252 5.9E-69 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 Pfam PF00226 DnaJ domain 5 66 2.7E-27 T 13-10-2018 IPR001623 DnaJ domain HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 4 343 1.7E-119 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 Pfam PF00684 DnaJ central domain 143 201 4.1E-12 T 13-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 Gene3D G3DSA:2.60.260.20 249 353 6.1E-21 T 13-10-2018 HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 SMART SM00271 3 61 1.1E-29 T 13-10-2018 IPR001623 DnaJ domain HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 SUPERFAMILY SSF49493 252 338 1.44E-17 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 SUPERFAMILY SSF49493 115 248 9.81E-14 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 Gene3D G3DSA:1.10.287.110 2 111 4.8E-33 T 13-10-2018 IPR036869 Chaperone J-domain superfamily HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 1 366 33.207 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 SUPERFAMILY SSF57938 130 205 3.01E-18 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 SUPERFAMILY SSF46565 4 100 1.44E-31 T 13-10-2018 IPR036869 Chaperone J-domain superfamily HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 Gene3D G3DSA:2.60.260.20 115 243 1.9E-32 T 13-10-2018 HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 Gene3D G3DSA:2.10.230.10 143 202 1.9E-32 T 13-10-2018 HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 PRINTS PR00625 DnaJ domain signature 41 61 5.6E-27 T 13-10-2018 IPR001623 DnaJ domain HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 PRINTS PR00625 DnaJ domain signature 61 80 5.6E-27 T 13-10-2018 IPR001623 DnaJ domain HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 PRINTS PR00625 DnaJ domain signature 24 39 5.6E-27 T 13-10-2018 IPR001623 DnaJ domain HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 PRINTS PR00625 DnaJ domain signature 6 24 5.6E-27 T 13-10-2018 IPR001623 DnaJ domain HCD_04860 a1a494cd2d3af0c756ecd0f10fa824dd 368 Pfam PF01556 DnaJ C terminal domain 119 327 2.4E-32 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal HCD_03590 7a042e926c4ecdd568ada23632f58ef4 195 Gene3D G3DSA:1.25.40.600 1 195 1.3E-84 T 13-10-2018 IPR038523 AmiS/UreI transporter superfamily HCD_03590 7a042e926c4ecdd568ada23632f58ef4 195 Pfam PF02293 AmiS/UreI family transporter 1 193 7.9E-65 T 13-10-2018 IPR003211 AmiS/UreI transporter GO:0016020 HCD_02065 4d536eee79085cc74a532d96ca09c285 615 Gene3D G3DSA:3.40.50.970 305 476 1.9E-58 T 13-10-2018 HCD_02065 4d536eee79085cc74a532d96ca09c285 615 Gene3D G3DSA:3.40.50.920 485 614 7.4E-21 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 HCD_02065 4d536eee79085cc74a532d96ca09c285 615 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 1 614 40.387 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 HCD_02065 4d536eee79085cc74a532d96ca09c285 615 ProSitePatterns PS00801 Transketolase signature 1. 25 44 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 HCD_02065 4d536eee79085cc74a532d96ca09c285 615 Pfam PF02780 Transketolase, C-terminal domain 485 604 2.2E-22 T 13-10-2018 IPR033248 Transketolase, C-terminal domain HCD_02065 4d536eee79085cc74a532d96ca09c285 615 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 13 271 1.8E-94 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 HCD_02065 4d536eee79085cc74a532d96ca09c285 615 SMART SM00861 308 473 3.2E-52 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain HCD_02065 4d536eee79085cc74a532d96ca09c285 615 ProSitePatterns PS00802 Transketolase signature 2. 414 430 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 HCD_02065 4d536eee79085cc74a532d96ca09c285 615 SUPERFAMILY SSF52922 481 613 4.97E-21 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 HCD_02065 4d536eee79085cc74a532d96ca09c285 615 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 4 613 1.2E-293 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 HCD_02065 4d536eee79085cc74a532d96ca09c285 615 SUPERFAMILY SSF52518 309 485 3.92E-44 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold HCD_02065 4d536eee79085cc74a532d96ca09c285 615 Pfam PF02779 Transketolase, pyrimidine binding domain 312 469 4.8E-31 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain HCD_02065 4d536eee79085cc74a532d96ca09c285 615 SUPERFAMILY SSF52518 16 370 4.72E-73 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold HCD_06565 a94462939926a4d2d3a803d2eb6d1760 1696 SUPERFAMILY SSF53335 1111 1326 4.07E-32 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_06565 a94462939926a4d2d3a803d2eb6d1760 1696 Pfam PF07669 Eco57I restriction-modification methylase 1208 1287 2.3E-5 T 13-10-2018 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 HCD_06565 a94462939926a4d2d3a803d2eb6d1760 1696 Gene3D G3DSA:3.40.50.150 1115 1334 7.7E-27 T 13-10-2018 HCD_06565 a94462939926a4d2d3a803d2eb6d1760 1696 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 1234 1258 2.2E-11 T 13-10-2018 HCD_06565 a94462939926a4d2d3a803d2eb6d1760 1696 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 1150 1164 2.2E-11 T 13-10-2018 HCD_06565 a94462939926a4d2d3a803d2eb6d1760 1696 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 1208 1220 2.2E-11 T 13-10-2018 HCD_06565 a94462939926a4d2d3a803d2eb6d1760 1696 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 1120 1136 2.2E-11 T 13-10-2018 HCD_06605 f3f0c291758a2d8176dba81cc95e86e3 113 Gene3D G3DSA:2.60.120.10 5 101 1.1E-16 T 13-10-2018 IPR014710 RmlC-like jelly roll fold HCD_06605 f3f0c291758a2d8176dba81cc95e86e3 113 SUPERFAMILY SSF51182 15 94 5.51E-12 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily HCD_05445 12a799e042a188afc862c3ae4f19f5f1 333 Pfam PF03734 L,D-transpeptidase catalytic domain 75 197 1.1E-9 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 HCD_05445 12a799e042a188afc862c3ae4f19f5f1 333 SUPERFAMILY SSF141523 84 185 5.89E-8 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like HCD_05445 12a799e042a188afc862c3ae4f19f5f1 333 SUPERFAMILY SSF54427 219 330 2.19E-8 T 13-10-2018 IPR032710 NTF2-like domain superfamily HCD_04815 68c932c77db950f41d79470f3cb6a261 159 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 12 157 34.124 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 HCD_04815 68c932c77db950f41d79470f3cb6a261 159 SUPERFAMILY SSF54637 14 157 2.76E-44 T 13-10-2018 IPR029069 HotDog domain superfamily HCD_04815 68c932c77db950f41d79470f3cb6a261 159 Pfam PF07977 FabA-like domain 21 150 3.4E-37 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 HCD_04815 68c932c77db950f41d79470f3cb6a261 159 Gene3D G3DSA:3.10.129.10 4 159 3.3E-56 T 13-10-2018 HCD_04815 68c932c77db950f41d79470f3cb6a261 159 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 12 155 4.5E-62 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 HCD_06795 817362570ac0d5b5ae2484776dea75dd 153 Gene3D G3DSA:3.40.50.2020 1 151 2.8E-28 T 13-10-2018 HCD_06795 817362570ac0d5b5ae2484776dea75dd 153 SUPERFAMILY SSF53271 2 138 1.12E-21 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like HCD_06795 817362570ac0d5b5ae2484776dea75dd 153 Pfam PF00156 Phosphoribosyl transferase domain 12 147 1.6E-14 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 HCD_07910 54d44688fd88d45ef0145f5ed24d2302 650 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 491 512 1.7E-7 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07910 54d44688fd88d45ef0145f5ed24d2302 650 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 602 623 1.7E-7 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07910 54d44688fd88d45ef0145f5ed24d2302 650 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 515 535 1.7E-7 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07130 a4ba091f388e2cc8efd80ab9323ffbc5 70 Gene3D G3DSA:3.30.429.10 2 68 1.2E-21 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily HCD_07130 a4ba091f388e2cc8efd80ab9323ffbc5 70 SUPERFAMILY SSF55331 2 68 3.81E-15 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily HCD_07130 a4ba091f388e2cc8efd80ab9323ffbc5 70 Pfam PF01361 Tautomerase enzyme 2 63 1.8E-18 T 13-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 HCD_07130 a4ba091f388e2cc8efd80ab9323ffbc5 70 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 66 1.0E-24 T 13-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 HCD_05750 c61625eb2659fd9c8c10437359657fc6 106 Pfam PF00085 Thioredoxin 5 103 1.9E-32 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 HCD_05750 c61625eb2659fd9c8c10437359657fc6 106 PIRSF PIRSF000077 1 105 1.2E-40 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 HCD_05750 c61625eb2659fd9c8c10437359657fc6 106 TIGRFAM TIGR01068 thioredoxin: thioredoxin 8 103 2.0E-39 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 HCD_05750 c61625eb2659fd9c8c10437359657fc6 106 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 HCD_05750 c61625eb2659fd9c8c10437359657fc6 106 SUPERFAMILY SSF52833 2 105 7.51E-38 T 13-10-2018 IPR036249 Thioredoxin-like superfamily HCD_05750 c61625eb2659fd9c8c10437359657fc6 106 Gene3D G3DSA:3.40.30.10 1 106 1.2E-35 T 13-10-2018 HCD_05750 c61625eb2659fd9c8c10437359657fc6 106 PRINTS PR00421 Thioredoxin family signature 29 38 4.0E-9 T 13-10-2018 HCD_05750 c61625eb2659fd9c8c10437359657fc6 106 PRINTS PR00421 Thioredoxin family signature 69 80 4.0E-9 T 13-10-2018 HCD_05750 c61625eb2659fd9c8c10437359657fc6 106 PRINTS PR00421 Thioredoxin family signature 21 29 4.0E-9 T 13-10-2018 HCD_05115 7c4b7dad93961251481c72af9694aeb9 53 Gene3D G3DSA:1.10.3290.10 1 51 1.3E-13 T 13-10-2018 IPR036597 Fido-like domain superfamily HCD_05115 7c4b7dad93961251481c72af9694aeb9 53 SUPERFAMILY SSF140931 1 37 7.19E-10 T 13-10-2018 IPR036597 Fido-like domain superfamily HCD_02130 76d2b98a5329b63393c6a2f5cb15eafb 268 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 225 4.2E-23 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain HCD_02130 76d2b98a5329b63393c6a2f5cb15eafb 268 PIRSF PIRSF003092 1 268 1.2E-86 T 13-10-2018 IPR025501 ATP binding protein MinD HCD_02130 76d2b98a5329b63393c6a2f5cb15eafb 268 SUPERFAMILY SSF52540 1 251 3.62E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02130 76d2b98a5329b63393c6a2f5cb15eafb 268 Gene3D G3DSA:3.40.50.300 1 257 1.1E-65 T 13-10-2018 HCD_02130 76d2b98a5329b63393c6a2f5cb15eafb 268 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 3 267 1.9E-118 T 13-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 HCD_01665 152554371cd75726018b36d42c077251 78 Pfam PF00872 Transposase, Mutator family 1 76 1.4E-13 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 HCD_03505 20a3066bfa400fe01654963039e699b3 309 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 297 7.5E-16 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain HCD_03505 20a3066bfa400fe01654963039e699b3 309 Gene3D G3DSA:3.40.366.10 4 280 9.1E-92 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 HCD_03505 20a3066bfa400fe01654963039e699b3 309 Pfam PF00698 Acyl transferase domain 6 271 1.6E-22 T 13-10-2018 IPR014043 Acyl transferase HCD_03505 20a3066bfa400fe01654963039e699b3 309 Gene3D G3DSA:3.30.70.250 125 194 9.1E-92 T 13-10-2018 HCD_03505 20a3066bfa400fe01654963039e699b3 309 SUPERFAMILY SSF55048 131 190 2.88E-12 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding HCD_03505 20a3066bfa400fe01654963039e699b3 309 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 1 286 2.0E-116 T 13-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 HCD_03505 20a3066bfa400fe01654963039e699b3 309 SUPERFAMILY SSF52151 3 306 6.02E-53 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase HCD_03505 20a3066bfa400fe01654963039e699b3 309 PIRSF PIRSF000446 1 306 8.5E-69 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 HCD_05615 22ce87bf0b5c8e410898d7dc007b442b 110 Pfam PF03927 NapD protein 1 73 1.6E-15 T 13-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly HCD_05615 22ce87bf0b5c8e410898d7dc007b442b 110 Gene3D G3DSA:3.30.70.920 1 69 3.1E-9 T 13-10-2018 HCD_04495 9f91854ad173f19222650839ed7d9f42 399 SUPERFAMILY SSF51735 3 190 1.16E-15 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_04495 9f91854ad173f19222650839ed7d9f42 399 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 141 392 1.6E-31 T 13-10-2018 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 HCD_04495 9f91854ad173f19222650839ed7d9f42 399 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 4 135 1.5E-31 T 13-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 HCD_04495 9f91854ad173f19222650839ed7d9f42 399 Gene3D G3DSA:3.30.360.10 151 347 5.1E-144 T 13-10-2018 HCD_04495 9f91854ad173f19222650839ed7d9f42 399 Gene3D G3DSA:3.40.50.720 5 394 5.1E-144 T 13-10-2018 HCD_02860 718b5c681d5ff0031ba14cb8b8b362da 155 SUPERFAMILY SSF47973 6 148 1.2E-58 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily HCD_02860 718b5c681d5ff0031ba14cb8b8b362da 155 PIRSF PIRSF002122 4 155 4.6E-60 T 13-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 HCD_02860 718b5c681d5ff0031ba14cb8b8b362da 155 ProSitePatterns PS00052 Ribosomal protein S7 signature. 19 45 - T 13-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_02860 718b5c681d5ff0031ba14cb8b8b362da 155 Gene3D G3DSA:1.10.455.10 1 155 4.8E-61 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily HCD_02860 718b5c681d5ff0031ba14cb8b8b362da 155 Pfam PF00177 Ribosomal protein S7p/S5e 2 148 2.0E-63 T 13-10-2018 IPR023798 Ribosomal protein S7 domain HCD_02860 718b5c681d5ff0031ba14cb8b8b362da 155 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 155 35.639 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 HCD_02860 718b5c681d5ff0031ba14cb8b8b362da 155 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 2 155 1.8E-71 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 HCD_06435 ab1ec010b6b5898d16ac6769d3cf881a 235 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 2 227 1.3E-85 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 HCD_06435 ab1ec010b6b5898d16ac6769d3cf881a 235 Pfam PF01728 FtsJ-like methyltransferase 56 232 2.5E-16 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 HCD_06435 ab1ec010b6b5898d16ac6769d3cf881a 235 SUPERFAMILY SSF55174 1 57 4.37E-13 T 13-10-2018 HCD_06435 ab1ec010b6b5898d16ac6769d3cf881a 235 Pfam PF01479 S4 domain 1 48 2.3E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_06435 ab1ec010b6b5898d16ac6769d3cf881a 235 Gene3D G3DSA:3.10.290.10 1 49 6.2E-9 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 HCD_06435 ab1ec010b6b5898d16ac6769d3cf881a 235 SUPERFAMILY SSF53335 42 232 9.47E-17 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_06435 ab1ec010b6b5898d16ac6769d3cf881a 235 SMART SM00363 1 62 2.5E-13 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_06435 ab1ec010b6b5898d16ac6769d3cf881a 235 Gene3D G3DSA:3.40.50.150 50 235 2.3E-61 T 13-10-2018 HCD_00465 06c63e7327e3c795fe4f035434b6c30a 512 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 9 488 2.1E-169 T 13-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00465 06c63e7327e3c795fe4f035434b6c30a 512 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 377 403 3.4E-36 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00465 06c63e7327e3c795fe4f035434b6c30a 512 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 162 186 3.4E-36 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00465 06c63e7327e3c795fe4f035434b6c30a 512 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 325 344 3.4E-36 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00465 06c63e7327e3c795fe4f035434b6c30a 512 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 132 151 3.4E-36 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00465 06c63e7327e3c795fe4f035434b6c30a 512 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 237 261 3.4E-36 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00465 06c63e7327e3c795fe4f035434b6c30a 512 Pfam PF00361 Proton-conducting membrane transporter 126 419 7.2E-66 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_07415 a7de68ddd0b6804caf343393e58e9347 26 SUPERFAMILY SSF46600 1 25 4.32E-9 T 13-10-2018 IPR036876 UVR domain superfamily HCD_07415 a7de68ddd0b6804caf343393e58e9347 26 Pfam PF02151 UvrB/uvrC motif 1 25 1.4E-10 T 13-10-2018 IPR001943 UVR domain GO:0005515 HCD_07415 a7de68ddd0b6804caf343393e58e9347 26 Gene3D G3DSA:4.10.860.10 1 26 6.2E-7 T 13-10-2018 HCD_03930 6de3dc25718e43a3d92477a192230630 208 Gene3D G3DSA:3.40.50.150 30 204 1.4E-7 T 13-10-2018 HCD_03930 6de3dc25718e43a3d92477a192230630 208 PIRSF PIRSF011491 1 208 3.8E-72 T 13-10-2018 IPR016584 Methyltransferase VrtF-like HCD_03930 6de3dc25718e43a3d92477a192230630 208 SUPERFAMILY SSF53335 16 185 3.89E-10 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_01975 4abdae906540bc32ee8594c88350c1e3 125 Gene3D G3DSA:3.30.1330.40 1 125 1.6E-50 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 HCD_01975 4abdae906540bc32ee8594c88350c1e3 125 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 101 119 - T 13-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 HCD_01975 4abdae906540bc32ee8594c88350c1e3 125 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 2 125 1.6E-53 T 13-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 HCD_01975 4abdae906540bc32ee8594c88350c1e3 125 Pfam PF01042 Endoribonuclease L-PSP 10 124 1.1E-41 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 HCD_01975 4abdae906540bc32ee8594c88350c1e3 125 SUPERFAMILY SSF55298 1 125 5.81E-44 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 HCD_03425 02ff772feca9d26ec0dc455fb370149b 184 SUPERFAMILY SSF58014 38 127 2.22E-21 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 HCD_03425 02ff772feca9d26ec0dc455fb370149b 184 Gene3D G3DSA:2.30.22.10 127 182 1.1E-22 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 HCD_03425 02ff772feca9d26ec0dc455fb370149b 184 ProSitePatterns PS01071 grpE protein signature. 137 180 - T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 HCD_03425 02ff772feca9d26ec0dc455fb370149b 184 PRINTS PR00773 GrpE protein signature 53 69 1.6E-24 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 HCD_03425 02ff772feca9d26ec0dc455fb370149b 184 PRINTS PR00773 GrpE protein signature 81 96 1.6E-24 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 HCD_03425 02ff772feca9d26ec0dc455fb370149b 184 PRINTS PR00773 GrpE protein signature 161 180 1.6E-24 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 HCD_03425 02ff772feca9d26ec0dc455fb370149b 184 PRINTS PR00773 GrpE protein signature 134 149 1.6E-24 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 HCD_03425 02ff772feca9d26ec0dc455fb370149b 184 Hamap MF_01151 Protein GrpE [grpE]. 3 182 19.402 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 HCD_03425 02ff772feca9d26ec0dc455fb370149b 184 Pfam PF01025 GrpE 22 182 1.3E-48 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 HCD_03425 02ff772feca9d26ec0dc455fb370149b 184 SUPERFAMILY SSF51064 135 183 1.57E-17 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 HCD_03425 02ff772feca9d26ec0dc455fb370149b 184 Gene3D G3DSA:3.90.20.20 13 126 3.7E-21 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 HCD_06730 f77a96353cb5bf43a88033396c2b7c1f 207 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 2 207 7.9E-86 T 13-10-2018 HCD_06730 f77a96353cb5bf43a88033396c2b7c1f 207 Gene3D G3DSA:1.10.150.210 14 74 6.1E-64 T 13-10-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 HCD_06730 f77a96353cb5bf43a88033396c2b7c1f 207 SUPERFAMILY SSF56784 3 207 8.01E-50 T 13-10-2018 IPR036412 HAD-like superfamily HCD_06730 f77a96353cb5bf43a88033396c2b7c1f 207 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 4 174 1.3E-26 T 13-10-2018 HCD_06730 f77a96353cb5bf43a88033396c2b7c1f 207 Gene3D G3DSA:3.40.50.1000 4 195 6.1E-64 T 13-10-2018 IPR023214 HAD superfamily HCD_06730 f77a96353cb5bf43a88033396c2b7c1f 207 Pfam PF00702 haloacid dehalogenase-like hydrolase 3 175 2.2E-15 T 13-10-2018 HCD_05495 dfc2a79a0567aff330f50e08fac79d05 254 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 142 159 - T 13-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_05495 dfc2a79a0567aff330f50e08fac79d05 254 PIRSF PIRSF000161 1 254 4.2E-67 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_05495 dfc2a79a0567aff330f50e08fac79d05 254 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 253 7.4E-86 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_05495 dfc2a79a0567aff330f50e08fac79d05 254 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 121 252 5.2E-32 T 13-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_05495 dfc2a79a0567aff330f50e08fac79d05 254 Gene3D G3DSA:3.40.50.720 3 252 1.6E-68 T 13-10-2018 HCD_05495 dfc2a79a0567aff330f50e08fac79d05 254 SUPERFAMILY SSF51735 1 252 2.73E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_05495 dfc2a79a0567aff330f50e08fac79d05 254 SUPERFAMILY SSF55347 120 225 2.83E-26 T 13-10-2018 HCD_05495 dfc2a79a0567aff330f50e08fac79d05 254 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 1 254 27.729 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_05495 dfc2a79a0567aff330f50e08fac79d05 254 Gene3D G3DSA:3.30.360.10 120 223 1.6E-68 T 13-10-2018 HCD_05495 dfc2a79a0567aff330f50e08fac79d05 254 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 1 118 4.5E-23 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 HCD_05235 04db8d62ec9f5531e03073685cbec838 595 SUPERFAMILY SSF53335 46 365 8.81E-55 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_05235 04db8d62ec9f5531e03073685cbec838 595 Pfam PF02384 N-6 DNA Methylase 114 343 7.3E-27 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 HCD_05235 04db8d62ec9f5531e03073685cbec838 595 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 151 165 3.1E-20 T 13-10-2018 HCD_05235 04db8d62ec9f5531e03073685cbec838 595 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 127 143 3.1E-20 T 13-10-2018 HCD_05235 04db8d62ec9f5531e03073685cbec838 595 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 248 272 3.1E-20 T 13-10-2018 HCD_05235 04db8d62ec9f5531e03073685cbec838 595 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 234 246 3.1E-20 T 13-10-2018 HCD_05235 04db8d62ec9f5531e03073685cbec838 595 Gene3D G3DSA:3.40.50.150 106 382 5.9E-48 T 13-10-2018 HCD_05235 04db8d62ec9f5531e03073685cbec838 595 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 237 243 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_06275 bbccc1b6be83f8374028a49efedb4b4a 335 Pfam PF03432 Relaxase/Mobilisation nuclease domain 81 287 6.1E-9 T 13-10-2018 IPR005094 Endonuclease relaxase, MobA/VirD2 HCD_00385 1f12352bbd26e03950631c48102bda4c 171 PRINTS PR01651 Protein-export SecG membrane protein signature 1 20 5.0E-7 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 HCD_00385 1f12352bbd26e03950631c48102bda4c 171 PRINTS PR01651 Protein-export SecG membrane protein signature 36 52 5.0E-7 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 HCD_00385 1f12352bbd26e03950631c48102bda4c 171 PRINTS PR01651 Protein-export SecG membrane protein signature 52 74 5.0E-7 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 HCD_00385 1f12352bbd26e03950631c48102bda4c 171 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 71 3.2E-19 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 HCD_00385 1f12352bbd26e03950631c48102bda4c 171 Pfam PF03840 Preprotein translocase SecG subunit 4 71 6.2E-16 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 HCD_02505 43a6304491b6ecf48b3a1074db59cf2b 241 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 2 240 5.3E-104 T 13-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 HCD_02505 43a6304491b6ecf48b3a1074db59cf2b 241 Gene3D G3DSA:3.40.50.150 16 240 7.5E-55 T 13-10-2018 HCD_02505 43a6304491b6ecf48b3a1074db59cf2b 241 PIRSF PIRSF006325 1 241 2.5E-100 T 13-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 HCD_02505 43a6304491b6ecf48b3a1074db59cf2b 241 Pfam PF13649 Methyltransferase domain 60 156 3.5E-13 T 13-10-2018 HCD_02505 43a6304491b6ecf48b3a1074db59cf2b 241 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 1 240 37.3 T 13-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 HCD_02505 43a6304491b6ecf48b3a1074db59cf2b 241 SUPERFAMILY SSF53335 16 240 7.08E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_01155 67d7db2483371e12603a4de12bcb450f 1054 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 396 412 2.0E-6 T 13-10-2018 HCD_01155 67d7db2483371e12603a4de12bcb450f 1054 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 623 635 2.0E-6 T 13-10-2018 HCD_01155 67d7db2483371e12603a4de12bcb450f 1054 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 424 438 2.0E-6 T 13-10-2018 HCD_01155 67d7db2483371e12603a4de12bcb450f 1054 SUPERFAMILY SSF53335 272 751 2.79E-35 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_00305 8a5cffbb15b626427b185fa13120b230 715 Gene3D G3DSA:1.20.58.100 464 581 9.5E-40 T 13-10-2018 HCD_00305 8a5cffbb15b626427b185fa13120b230 715 SUPERFAMILY SSF51905 3 460 5.81E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_00305 8a5cffbb15b626427b185fa13120b230 715 SUPERFAMILY SSF56425 251 397 7.18E-36 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 HCD_00305 8a5cffbb15b626427b185fa13120b230 715 Pfam PF02910 Fumarate reductase flavoprotein C-term 494 624 1.1E-36 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 HCD_00305 8a5cffbb15b626427b185fa13120b230 715 PIRSF PIRSF000171 1 616 5.4E-33 T 13-10-2018 HCD_00305 8a5cffbb15b626427b185fa13120b230 715 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 41 50 - T 13-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 HCD_00305 8a5cffbb15b626427b185fa13120b230 715 Pfam PF00890 FAD binding domain 7 437 3.5E-128 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 HCD_00305 8a5cffbb15b626427b185fa13120b230 715 Gene3D G3DSA:3.50.50.60 7 276 7.0E-114 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_00305 8a5cffbb15b626427b185fa13120b230 715 Gene3D G3DSA:3.50.50.60 376 463 3.0E-25 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily HCD_00305 8a5cffbb15b626427b185fa13120b230 715 Gene3D G3DSA:1.10.472.70 582 675 1.0E-41 T 13-10-2018 HCD_00305 8a5cffbb15b626427b185fa13120b230 715 Gene3D G3DSA:3.90.700.10 277 359 7.0E-114 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 HCD_00305 8a5cffbb15b626427b185fa13120b230 715 SUPERFAMILY SSF46977 485 681 2.09E-58 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 HCD_01705 a041cccba5f03d693a43587dd7ff4119 269 SUPERFAMILY SSF53613 4 261 2.96E-74 T 13-10-2018 IPR029056 Ribokinase-like HCD_01705 a041cccba5f03d693a43587dd7ff4119 269 Gene3D G3DSA:3.40.1190.20 2 268 4.0E-88 T 13-10-2018 IPR029056 Ribokinase-like HCD_01705 a041cccba5f03d693a43587dd7ff4119 269 Pfam PF08543 Phosphomethylpyrimidine kinase 14 261 1.6E-86 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 HCD_01705 a041cccba5f03d693a43587dd7ff4119 269 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 7 263 2.9E-104 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 HCD_06350 1d1849c7800775ee2fd75aac0e274b81 235 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 50 72 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 HCD_06350 1d1849c7800775ee2fd75aac0e274b81 235 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 14 177 3.7E-56 T 13-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 HCD_06350 1d1849c7800775ee2fd75aac0e274b81 235 Pfam PF01066 CDP-alcohol phosphatidyltransferase 9 72 1.0E-15 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 HCD_06350 1d1849c7800775ee2fd75aac0e274b81 235 Gene3D G3DSA:1.20.120.1760 3 151 5.5E-16 T 13-10-2018 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 Gene3D G3DSA:3.40.50.1260 177 390 7.9E-144 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 Pfam PF00162 Phosphoglycerate kinase 14 390 1.0E-138 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 13 400 36.86 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 23 33 - T 13-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 PIRSF PIRSF000724 6 402 1.8E-137 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 PRINTS PR00477 Phosphoglycerate kinase family signature 198 217 3.3E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 PRINTS PR00477 Phosphoglycerate kinase family signature 116 131 3.3E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 PRINTS PR00477 Phosphoglycerate kinase family signature 320 345 3.3E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 PRINTS PR00477 Phosphoglycerate kinase family signature 353 364 3.3E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 PRINTS PR00477 Phosphoglycerate kinase family signature 144 166 3.3E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 PRINTS PR00477 Phosphoglycerate kinase family signature 40 62 3.3E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 PRINTS PR00477 Phosphoglycerate kinase family signature 376 393 3.3E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 PRINTS PR00477 Phosphoglycerate kinase family signature 18 34 3.3E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 PRINTS PR00477 Phosphoglycerate kinase family signature 175 197 3.3E-83 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 SUPERFAMILY SSF53748 10 400 3.3E-138 T 13-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_04270 64cb82af571ce8945c0f7d3a2f8f7fef 402 Gene3D G3DSA:3.40.50.1260 16 398 7.9E-144 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 HCD_02640 03e1317f583ab6f3f3d43c858634e4d0 328 SUPERFAMILY SSF46589 6 90 1.88E-15 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 HCD_02640 03e1317f583ab6f3f3d43c858634e4d0 328 Gene3D G3DSA:3.30.930.10 2 328 2.2E-103 T 13-10-2018 HCD_02640 03e1317f583ab6f3f3d43c858634e4d0 328 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 13 78 2.8E-14 T 13-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 HCD_02640 03e1317f583ab6f3f3d43c858634e4d0 328 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 35 328 9.3E-104 T 13-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 HCD_02640 03e1317f583ab6f3f3d43c858634e4d0 328 Pfam PF01409 tRNA synthetases class II core domain (F) 85 328 4.0E-93 T 13-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 HCD_02640 03e1317f583ab6f3f3d43c858634e4d0 328 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 1 328 43.639 T 13-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 HCD_02640 03e1317f583ab6f3f3d43c858634e4d0 328 SUPERFAMILY SSF55681 95 327 5.63E-67 T 13-10-2018 HCD_06885 223a55b32be7748f042d674ddd73700c 225 SUPERFAMILY SSF69572 5 218 3.4E-36 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 HCD_06885 223a55b32be7748f042d674ddd73700c 225 Pfam PF00899 ThiF family 17 140 4.1E-22 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 HCD_06885 223a55b32be7748f042d674ddd73700c 225 Gene3D G3DSA:3.40.50.720 6 225 1.5E-42 T 13-10-2018 HCD_01925 af78fc3d239551b287dbfcc91c6a6ab3 383 Gene3D G3DSA:3.40.50.150 16 201 1.1E-37 T 13-10-2018 HCD_01925 af78fc3d239551b287dbfcc91c6a6ab3 383 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 36 50 3.5E-21 T 13-10-2018 HCD_01925 af78fc3d239551b287dbfcc91c6a6ab3 383 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 14 30 3.5E-21 T 13-10-2018 HCD_01925 af78fc3d239551b287dbfcc91c6a6ab3 383 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 114 138 3.5E-21 T 13-10-2018 HCD_01925 af78fc3d239551b287dbfcc91c6a6ab3 383 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 81 93 3.5E-21 T 13-10-2018 HCD_01925 af78fc3d239551b287dbfcc91c6a6ab3 383 Pfam PF07669 Eco57I restriction-modification methylase 80 186 4.6E-12 T 13-10-2018 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 HCD_01925 af78fc3d239551b287dbfcc91c6a6ab3 383 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 84 90 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_01925 af78fc3d239551b287dbfcc91c6a6ab3 383 SUPERFAMILY SSF53335 2 222 5.57E-35 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_06305 5cc594003bc67b03ab9dd8b866757a3e 345 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 4 345 5.1E-138 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 HCD_06305 5cc594003bc67b03ab9dd8b866757a3e 345 SUPERFAMILY SSF111337 8 345 4.84E-106 T 13-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 HCD_06305 5cc594003bc67b03ab9dd8b866757a3e 345 Gene3D G3DSA:2.40.10.240 67 173 7.9E-92 T 13-10-2018 HCD_06305 5cc594003bc67b03ab9dd8b866757a3e 345 Gene3D G3DSA:3.40.1780.10 17 344 7.9E-92 T 13-10-2018 HCD_06305 5cc594003bc67b03ab9dd8b866757a3e 345 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 4 345 38.328 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 HCD_06305 5cc594003bc67b03ab9dd8b866757a3e 345 Pfam PF02547 Queuosine biosynthesis protein 7 344 4.4E-101 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 HCD_08240 9b314278010564e5c033a19677415487 279 SUPERFAMILY SSF53335 1 255 2.05E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_08240 9b314278010564e5c033a19677415487 279 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 182 188 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_08240 9b314278010564e5c033a19677415487 279 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 1 274 2.1E-90 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 HCD_08240 9b314278010564e5c033a19677415487 279 Pfam PF05175 Methyltransferase small domain 108 190 2.6E-10 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 HCD_08240 9b314278010564e5c033a19677415487 279 Gene3D G3DSA:1.10.8.10 1 81 6.6E-15 T 13-10-2018 HCD_08240 9b314278010564e5c033a19677415487 279 Gene3D G3DSA:3.40.50.150 82 271 3.1E-46 T 13-10-2018 HCD_08240 9b314278010564e5c033a19677415487 279 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 25 267 2.3E-62 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 HCD_06040 3a3468242bd7b540c7d6e3c36fd7c030 270 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 268 7.0E-57 T 13-10-2018 HCD_06040 3a3468242bd7b540c7d6e3c36fd7c030 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 164 7.3E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06040 3a3468242bd7b540c7d6e3c36fd7c030 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 230 250 7.3E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06040 3a3468242bd7b540c7d6e3c36fd7c030 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 193 7.3E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06040 3a3468242bd7b540c7d6e3c36fd7c030 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 19 36 7.3E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06040 3a3468242bd7b540c7d6e3c36fd7c030 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 95 106 7.3E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06040 3a3468242bd7b540c7d6e3c36fd7c030 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 195 212 7.3E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_06040 3a3468242bd7b540c7d6e3c36fd7c030 270 SUPERFAMILY SSF51735 16 268 9.93E-64 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_06040 3a3468242bd7b540c7d6e3c36fd7c030 270 Gene3D G3DSA:3.40.50.720 12 270 1.7E-57 T 13-10-2018 HCD_00865 306ea75a7afb561795733adc1e137f32 299 Gene3D G3DSA:3.10.28.20 15 116 1.7E-36 T 13-10-2018 HCD_00865 306ea75a7afb561795733adc1e137f32 299 Gene3D G3DSA:3.30.160.710 187 283 2.8E-36 T 13-10-2018 HCD_00865 306ea75a7afb561795733adc1e137f32 299 Pfam PF02169 LPP20 lipoprotein 17 115 5.9E-11 T 13-10-2018 IPR024952 Lipoprotein LPP20-like HCD_07650 e2b22c7136b9800e96f329365d1fe01a 433 Gene3D G3DSA:1.10.1200.160 350 380 2.4E-7 T 13-10-2018 HCD_07650 e2b22c7136b9800e96f329365d1fe01a 433 Gene3D G3DSA:2.40.128.260 201 349 5.3E-45 T 13-10-2018 HCD_07650 e2b22c7136b9800e96f329365d1fe01a 433 Pfam PF03743 Bacterial conjugation TrbI-like protein 206 401 1.5E-40 T 13-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI HCD_08440 d025c40f8499dc06c762c36313a47809 208 Gene3D G3DSA:3.20.20.70 1 208 4.9E-71 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_08440 d025c40f8499dc06c762c36313a47809 208 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 6 207 2.1E-85 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 HCD_08440 d025c40f8499dc06c762c36313a47809 208 Pfam PF01081 KDPG and KHG aldolase 6 199 3.2E-76 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 HCD_08440 d025c40f8499dc06c762c36313a47809 208 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 37 46 - T 13-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 HCD_08440 d025c40f8499dc06c762c36313a47809 208 SUPERFAMILY SSF51569 3 206 8.42E-66 T 13-10-2018 HCD_07075 338eaebec12e9e5643ba0f352b8c52e2 95 Pfam PF01817 Chorismate mutase type II 12 87 1.6E-20 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 HCD_07075 338eaebec12e9e5643ba0f352b8c52e2 95 SUPERFAMILY SSF48600 7 90 5.8E-19 T 13-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 HCD_07075 338eaebec12e9e5643ba0f352b8c52e2 95 SMART SM00830 12 89 5.4E-22 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 HCD_07075 338eaebec12e9e5643ba0f352b8c52e2 95 Gene3D G3DSA:1.20.59.10 4 89 6.6E-21 T 13-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 HCD_03940 0a16af971aabea28d0e9fa1926ac66f1 116 Gene3D G3DSA:3.90.1030.10 1 116 3.9E-42 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03940 0a16af971aabea28d0e9fa1926ac66f1 116 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.167 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03940 0a16af971aabea28d0e9fa1926ac66f1 116 SUPERFAMILY SSF64263 1 116 1.2E-43 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03940 0a16af971aabea28d0e9fa1926ac66f1 116 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03940 0a16af971aabea28d0e9fa1926ac66f1 116 TIGRFAM TIGR00059 L17: ribosomal protein bL17 6 116 4.3E-49 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03940 0a16af971aabea28d0e9fa1926ac66f1 116 Pfam PF01196 Ribosomal protein L17 20 116 1.8E-30 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_07835 66a43ce0074428139b9f260e15dda585 1175 Pfam PF01856 Helicobacter outer membrane protein 1003 1175 2.2E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07835 66a43ce0074428139b9f260e15dda585 1175 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 1018 1038 3.9E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07835 66a43ce0074428139b9f260e15dda585 1175 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 1039 1060 3.9E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07835 66a43ce0074428139b9f260e15dda585 1175 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 1135 1156 3.9E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07835 66a43ce0074428139b9f260e15dda585 1175 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 992 1013 3.9E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05585 d88c45d540af6eeef2b494ed70a06b38 784 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 736 757 8.0E-9 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05585 d88c45d540af6eeef2b494ed70a06b38 784 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 622 643 8.0E-9 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05585 d88c45d540af6eeef2b494ed70a06b38 784 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 646 666 8.0E-9 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02400 5fbb58b26dc18822e9a91ee161412865 252 Pfam PF01555 DNA methylase 29 243 1.4E-39 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 HCD_02400 5fbb58b26dc18822e9a91ee161412865 252 SUPERFAMILY SSF53335 6 246 1.82E-48 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_02400 5fbb58b26dc18822e9a91ee161412865 252 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 203 221 3.6E-20 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_02400 5fbb58b26dc18822e9a91ee161412865 252 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 226 246 3.6E-20 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_02400 5fbb58b26dc18822e9a91ee161412865 252 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 27 41 3.6E-20 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_02400 5fbb58b26dc18822e9a91ee161412865 252 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 184 201 3.6E-20 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 HCD_02400 5fbb58b26dc18822e9a91ee161412865 252 Gene3D G3DSA:3.40.50.150 1 250 4.8E-53 T 13-10-2018 HCD_02400 5fbb58b26dc18822e9a91ee161412865 252 ProSitePatterns PS00093 N-4 cytosine-specific DNA methylases signature. 32 37 - T 13-10-2018 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site GO:0003677|GO:0015667|GO:0090124 HCD_01695 8738f1dbac9d1b44e070a55629cd9583 345 Pfam PF08666 SAF domain 287 342 1.6E-8 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 HCD_01695 8738f1dbac9d1b44e070a55629cd9583 345 SUPERFAMILY SSF51269 275 341 2.35E-14 T 13-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 HCD_01695 8738f1dbac9d1b44e070a55629cd9583 345 SUPERFAMILY SSF51569 2 293 1.47E-74 T 13-10-2018 HCD_01695 8738f1dbac9d1b44e070a55629cd9583 345 SMART SM00858 283 342 4.5E-7 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 HCD_01695 8738f1dbac9d1b44e070a55629cd9583 345 Gene3D G3DSA:3.90.1210.10 271 342 6.4E-17 T 13-10-2018 HCD_01695 8738f1dbac9d1b44e070a55629cd9583 345 Pfam PF03102 NeuB family 36 267 1.2E-67 T 13-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 HCD_01695 8738f1dbac9d1b44e070a55629cd9583 345 Gene3D G3DSA:3.20.20.70 3 268 1.9E-84 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_02530 d1baed0eeb2d41f7099259d8d8d59684 242 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 242 28.357 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_02530 d1baed0eeb2d41f7099259d8d8d59684 242 Gene3D G3DSA:3.30.70.580 1 102 2.7E-22 T 13-10-2018 HCD_02530 d1baed0eeb2d41f7099259d8d8d59684 242 PIRSF PIRSF001430 1 242 3.4E-70 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_02530 d1baed0eeb2d41f7099259d8d8d59684 242 Pfam PF01416 tRNA pseudouridine synthase 138 242 6.6E-14 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_02530 d1baed0eeb2d41f7099259d8d8d59684 242 SUPERFAMILY SSF55120 1 242 2.16E-52 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_02530 d1baed0eeb2d41f7099259d8d8d59684 242 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 3 237 8.1E-61 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 HCD_02530 d1baed0eeb2d41f7099259d8d8d59684 242 Gene3D G3DSA:3.30.70.660 103 242 9.9E-18 T 13-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 HCD_07905 b39f4803ed03c95b46afa02aa16b6992 362 Pfam PF00892 EamA-like transporter family 262 349 1.9E-6 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 HCD_07905 b39f4803ed03c95b46afa02aa16b6992 362 Pfam PF00892 EamA-like transporter family 14 141 9.0E-11 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 HCD_07905 b39f4803ed03c95b46afa02aa16b6992 362 SUPERFAMILY SSF103481 44 142 6.15E-9 T 13-10-2018 HCD_07905 b39f4803ed03c95b46afa02aa16b6992 362 SUPERFAMILY SSF103481 272 349 1.83E-7 T 13-10-2018 HCD_06695 6df2ddc8861b6f3ed83c5a48d7736e88 354 Gene3D G3DSA:1.10.287.470 96 166 5.2E-21 T 13-10-2018 HCD_06695 6df2ddc8861b6f3ed83c5a48d7736e88 354 Gene3D G3DSA:2.40.50.100 62 204 5.2E-21 T 13-10-2018 HCD_06695 6df2ddc8861b6f3ed83c5a48d7736e88 354 Gene3D G3DSA:2.40.420.20 37 336 5.2E-21 T 13-10-2018 HCD_06695 6df2ddc8861b6f3ed83c5a48d7736e88 354 Gene3D G3DSA:2.40.30.170 48 277 5.2E-21 T 13-10-2018 HCD_03795 6ff52bbddd010fe6769a76d4c4705349 485 SUPERFAMILY SSF48371 12 214 4.93E-7 T 13-10-2018 IPR016024 Armadillo-type fold HCD_03795 6ff52bbddd010fe6769a76d4c4705349 485 Pfam PF04393 Protein of unknown function (DUF535) 247 477 1.9E-31 T 13-10-2018 IPR007488 Protein of unknown function DUF535 HCD_01040 90f5f774ed7d470c4f1c1414848fb531 165 SUPERFAMILY SSF55785 12 109 4.89E-16 T 13-10-2018 IPR035965 PAS domain superfamily HCD_01040 90f5f774ed7d470c4f1c1414848fb531 165 Pfam PF00989 PAS fold 11 105 1.5E-5 T 13-10-2018 IPR013767 PAS fold GO:0006355 HCD_01040 90f5f774ed7d470c4f1c1414848fb531 165 Gene3D G3DSA:3.30.450.20 11 110 2.3E-14 T 13-10-2018 HCD_04675 1b13f710703accd6f2cb8b123db73564 341 PIRSF PIRSF006468 1 338 2.5E-116 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 HCD_04675 1b13f710703accd6f2cb8b123db73564 341 SUPERFAMILY SSF56752 3 334 1.83E-99 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 HCD_04675 1b13f710703accd6f2cb8b123db73564 341 ProSitePatterns PS00770 Aminotransferases class-IV signature. 221 250 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 HCD_04675 1b13f710703accd6f2cb8b123db73564 341 Pfam PF01063 Amino-transferase class IV 56 296 2.9E-37 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 HCD_04675 1b13f710703accd6f2cb8b123db73564 341 Gene3D G3DSA:3.20.10.10 166 338 1.7E-55 T 13-10-2018 HCD_04675 1b13f710703accd6f2cb8b123db73564 341 Gene3D G3DSA:3.30.470.10 1 159 2.0E-56 T 13-10-2018 HCD_04675 1b13f710703accd6f2cb8b123db73564 341 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 30 337 3.2E-138 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 HCD_08779 6614cbd5e5ea80c984f831c25eb84c50 402 Gene3D G3DSA:1.10.10.10 14 163 4.3E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_08779 6614cbd5e5ea80c984f831c25eb84c50 402 Pfam PF01051 Initiator Replication protein 21 250 5.1E-43 T 13-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 HCD_08779 6614cbd5e5ea80c984f831c25eb84c50 402 SUPERFAMILY SSF46785 151 253 9.79E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily HCD_08779 6614cbd5e5ea80c984f831c25eb84c50 402 Gene3D G3DSA:1.10.10.10 166 285 2.9E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily HCD_08779 6614cbd5e5ea80c984f831c25eb84c50 402 SUPERFAMILY SSF46785 22 151 8.71E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily HCD_02560 2d6f937f85fd3cc31a18abf76b889b16 344 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 186 343 2.9E-47 T 13-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 HCD_02560 2d6f937f85fd3cc31a18abf76b889b16 344 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 3 186 2.5E-64 T 13-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 HCD_02560 2d6f937f85fd3cc31a18abf76b889b16 344 SUPERFAMILY SSF50156 81 184 1.58E-10 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 HCD_02560 2d6f937f85fd3cc31a18abf76b889b16 344 Pfam PF02163 Peptidase family M50 5 330 2.5E-66 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 HCD_02560 2d6f937f85fd3cc31a18abf76b889b16 344 Gene3D G3DSA:2.30.42.10 121 213 1.7E-11 T 13-10-2018 HCD_02070 9ccd0b124a5d30af00fe270dca9014fd 258 Pfam PF02108 Flagellar assembly protein FliH 123 248 2.0E-27 T 13-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE HCD_00230 b803c17515c71d5e7c989cd2cebbf889 59 Pfam PF00872 Transposase, Mutator family 16 55 2.2E-6 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 HCD_08065 b803c17515c71d5e7c989cd2cebbf889 59 Pfam PF00872 Transposase, Mutator family 16 55 2.2E-6 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 HCD_06570 b803c17515c71d5e7c989cd2cebbf889 59 Pfam PF00872 Transposase, Mutator family 16 55 2.2E-6 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 HCD_05430 92c4f5280a5cc7c18429a072462f3cb1 67 Gene3D G3DSA:2.30.170.50 1 67 1.5E-27 T 13-10-2018 HCD_05430 92c4f5280a5cc7c18429a072462f3cb1 67 Pfam PF01197 Ribosomal protein L31 1 65 3.2E-28 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_05430 92c4f5280a5cc7c18429a072462f3cb1 67 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 66 3.6E-29 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_05430 92c4f5280a5cc7c18429a072462f3cb1 67 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.3E-19 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_05430 92c4f5280a5cc7c18429a072462f3cb1 67 PRINTS PR01249 Ribosomal protein L31 signature 31 46 1.3E-19 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_05430 92c4f5280a5cc7c18429a072462f3cb1 67 PRINTS PR01249 Ribosomal protein L31 signature 46 64 1.3E-19 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_05430 92c4f5280a5cc7c18429a072462f3cb1 67 SUPERFAMILY SSF143800 1 66 5.1E-24 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_05430 92c4f5280a5cc7c18429a072462f3cb1 67 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_05430 92c4f5280a5cc7c18429a072462f3cb1 67 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 67 28.533 T 13-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03410 e457adc885ef9a502abead83e913e676 251 Gene3D G3DSA:3.90.550.10 1 236 3.6E-52 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_03410 e457adc885ef9a502abead83e913e676 251 Pfam PF00535 Glycosyl transferase family 2 5 130 9.9E-29 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 HCD_03410 e457adc885ef9a502abead83e913e676 251 SUPERFAMILY SSF53448 3 209 1.5E-49 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_08625 36d26bf462bd822619c76d0393802188 263 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 2 14 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 HCD_08625 36d26bf462bd822619c76d0393802188 263 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 240 258 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 HCD_08625 36d26bf462bd822619c76d0393802188 263 Pfam PF00145 C-5 cytosine-specific DNA methylase 1 260 7.6E-66 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08625 36d26bf462bd822619c76d0393802188 263 Gene3D G3DSA:3.90.120.10 116 224 1.2E-67 T 13-10-2018 HCD_08625 36d26bf462bd822619c76d0393802188 263 SUPERFAMILY SSF53335 1 262 5.54E-60 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_08625 36d26bf462bd822619c76d0393802188 263 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 41 55 1.2E-7 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08625 36d26bf462bd822619c76d0393802188 263 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 87 100 1.2E-7 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08625 36d26bf462bd822619c76d0393802188 263 Gene3D G3DSA:3.40.50.150 1 251 1.2E-67 T 13-10-2018 HCD_08625 36d26bf462bd822619c76d0393802188 263 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 1 258 1.3E-66 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_06235 41f4c7aff70a867e19b1df4faa737330 144 PIRSF PIRSF005900 1 144 1.3E-46 T 13-10-2018 IPR002177 DNA-binding protein Dps HCD_06235 41f4c7aff70a867e19b1df4faa737330 144 ProSitePatterns PS00819 Dps protein family signature 2. 51 65 - T 13-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 HCD_06235 41f4c7aff70a867e19b1df4faa737330 144 ProSitePatterns PS00818 Dps protein family signature 1. 25 41 - T 13-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 HCD_06235 41f4c7aff70a867e19b1df4faa737330 144 SUPERFAMILY SSF47240 2 144 3.81E-41 T 13-10-2018 IPR009078 Ferritin-like superfamily HCD_06235 41f4c7aff70a867e19b1df4faa737330 144 Pfam PF00210 Ferritin-like domain 5 144 2.6E-26 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 HCD_06235 41f4c7aff70a867e19b1df4faa737330 144 Gene3D G3DSA:1.20.1260.10 1 143 2.2E-47 T 13-10-2018 IPR012347 Ferritin-like HCD_06235 41f4c7aff70a867e19b1df4faa737330 144 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 25 41 2.3E-13 T 13-10-2018 IPR002177 DNA-binding protein Dps HCD_06235 41f4c7aff70a867e19b1df4faa737330 144 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 121 139 2.3E-13 T 13-10-2018 IPR002177 DNA-binding protein Dps HCD_06235 41f4c7aff70a867e19b1df4faa737330 144 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 49 65 2.3E-13 T 13-10-2018 IPR002177 DNA-binding protein Dps HCD_07170 ed5bc58fde1e6572e2568dc94e322c62 287 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_07170 ed5bc58fde1e6572e2568dc94e322c62 287 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 267 3.7E-10 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 HCD_07170 ed5bc58fde1e6572e2568dc94e322c62 287 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 234 266 1.2E-8 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 HCD_07170 ed5bc58fde1e6572e2568dc94e322c62 287 Gene3D G3DSA:3.40.50.300 1 285 1.0E-87 T 13-10-2018 HCD_07170 ed5bc58fde1e6572e2568dc94e322c62 287 SUPERFAMILY SSF52540 2 254 9.91E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_07170 ed5bc58fde1e6572e2568dc94e322c62 287 SMART SM00382 31 232 3.4E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_07170 ed5bc58fde1e6572e2568dc94e322c62 287 Pfam PF00005 ABC transporter 23 182 2.1E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_04805 8c4f44381690ddb4834ba258cb77708c 297 Gene3D G3DSA:1.25.40.10 128 284 1.4E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_04805 8c4f44381690ddb4834ba258cb77708c 297 Pfam PF13525 Outer membrane lipoprotein 123 266 2.3E-21 T 13-10-2018 IPR039565 Outer membrane lipoprotein BamD-like HCD_04805 8c4f44381690ddb4834ba258cb77708c 297 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 83 297 24.863 T 13-10-2018 IPR017689 Outer membrane protein assembly factor BamD HCD_04805 8c4f44381690ddb4834ba258cb77708c 297 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 86 271 9.6E-26 T 13-10-2018 IPR017689 Outer membrane protein assembly factor BamD HCD_03920 33b72e3019b292d4426a75421f9a788e 281 Gene3D G3DSA:1.10.1020.10 59 159 2.1E-52 T 13-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 HCD_03920 33b72e3019b292d4426a75421f9a788e 281 TIGRFAM TIGR00571 dam: DNA adenine methylase 6 273 1.3E-59 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_03920 33b72e3019b292d4426a75421f9a788e 281 SUPERFAMILY SSF53335 7 276 8.5E-52 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_03920 33b72e3019b292d4426a75421f9a788e 281 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 53 66 2.5E-9 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_03920 33b72e3019b292d4426a75421f9a788e 281 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 186 198 2.5E-9 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_03920 33b72e3019b292d4426a75421f9a788e 281 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 11 27 2.5E-9 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_03920 33b72e3019b292d4426a75421f9a788e 281 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 34 48 2.5E-9 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_03920 33b72e3019b292d4426a75421f9a788e 281 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 189 195 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_03920 33b72e3019b292d4426a75421f9a788e 281 Gene3D G3DSA:3.40.50.150 12 252 2.1E-52 T 13-10-2018 HCD_03920 33b72e3019b292d4426a75421f9a788e 281 PIRSF PIRSF000398 2 281 1.1E-55 T 13-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 HCD_03920 33b72e3019b292d4426a75421f9a788e 281 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 12 257 3.8E-48 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 HCD_04620 5bdad56d5eaeac25f9dd35deb501fd7d 79 SUPERFAMILY SSF140496 1 79 1.96E-34 T 13-10-2018 IPR038018 Uncharacterised protein HP_1531 HCD_04620 5bdad56d5eaeac25f9dd35deb501fd7d 79 Gene3D G3DSA:1.20.58.90 1 79 1.4E-38 T 13-10-2018 HCD_04620 5bdad56d5eaeac25f9dd35deb501fd7d 79 Pfam PF10398 Protein of unknown function (DUF2443) 1 79 3.6E-38 T 13-10-2018 IPR019469 Protein of unknown function DUF2443 HCD_07040 ebccf0547073f7da14f973fe7317bf91 76 Gene3D G3DSA:1.10.1200.10 4 76 6.1E-13 T 13-10-2018 IPR036736 ACP-like superfamily HCD_07040 ebccf0547073f7da14f973fe7317bf91 76 SUPERFAMILY SSF47336 33 75 2.72E-5 T 13-10-2018 IPR036736 ACP-like superfamily HCD_06630 efda2e6a0eb43ad6b1d3f5f7c1ed6f5e 604 Pfam PF07559 Flagellar basal body protein FlaE 356 446 1.3E-4 T 13-10-2018 IPR011491 Flagellar hook protein FlgE HCD_06630 efda2e6a0eb43ad6b1d3f5f7c1ed6f5e 604 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 513 602 4.9E-21 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain HCD_06630 efda2e6a0eb43ad6b1d3f5f7c1ed6f5e 604 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 5 230 1.1E-27 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G HCD_06630 efda2e6a0eb43ad6b1d3f5f7c1ed6f5e 604 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 356 585 2.4E-27 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G HCD_06630 efda2e6a0eb43ad6b1d3f5f7c1ed6f5e 604 SUPERFAMILY SSF117143 87 564 3.01E-44 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like HCD_06630 efda2e6a0eb43ad6b1d3f5f7c1ed6f5e 604 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site HCD_01585 b8315bea752d75abf16778b63674237b 378 Gene3D G3DSA:3.30.70.1450 292 370 8.6E-12 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 HCD_01585 b8315bea752d75abf16778b63674237b 378 Gene3D G3DSA:1.10.287.70 1 123 9.2E-8 T 13-10-2018 HCD_01585 b8315bea752d75abf16778b63674237b 378 Pfam PF02254 TrkA-N domain 138 259 4.4E-20 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 HCD_01585 b8315bea752d75abf16778b63674237b 378 Pfam PF02080 TrkA-C domain 294 361 7.1E-11 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 HCD_01585 b8315bea752d75abf16778b63674237b 378 SUPERFAMILY SSF81324 29 154 5.1E-12 T 13-10-2018 HCD_01585 b8315bea752d75abf16778b63674237b 378 Gene3D G3DSA:3.40.50.720 133 291 2.9E-21 T 13-10-2018 HCD_01585 b8315bea752d75abf16778b63674237b 378 SUPERFAMILY SSF51735 134 281 3.25E-22 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_01585 b8315bea752d75abf16778b63674237b 378 SUPERFAMILY SSF116726 288 363 9.55E-12 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 HCD_05265 7336b8fe904f3700fe6f4e97e872ecdc 169 Hamap MF_02110 UPF0763 protein . 17 156 22.192 T 13-10-2018 IPR019724 Uncharacterised protein family UPF0763 HCD_05265 7336b8fe904f3700fe6f4e97e872ecdc 169 Pfam PF10788 Protein of unknown function (DUF2603) 17 147 4.5E-48 T 13-10-2018 IPR019724 Uncharacterised protein family UPF0763 HCD_01550 3603e737245b689a6bdf23888d419cd5 243 SUPERFAMILY SSF161070 6 242 8.76E-59 T 13-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 HCD_01550 3603e737245b689a6bdf23888d419cd5 243 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 9 30 1.2E-8 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 HCD_01550 3603e737245b689a6bdf23888d419cd5 243 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 85 111 1.2E-8 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 HCD_01550 3603e737245b689a6bdf23888d419cd5 243 Pfam PF00209 Sodium:neurotransmitter symporter family 5 117 2.2E-19 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 HCD_01550 3603e737245b689a6bdf23888d419cd5 243 Pfam PF00209 Sodium:neurotransmitter symporter family 131 238 8.5E-8 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 HCD_01550 3603e737245b689a6bdf23888d419cd5 243 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 25 39 - T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 HCD_08005 68ad599082b16c14fcfc71a810c329ab 130 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 88 99 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_08005 68ad599082b16c14fcfc71a810c329ab 130 SUPERFAMILY SSF54862 43 100 6.28E-17 T 13-10-2018 HCD_08005 68ad599082b16c14fcfc71a810c329ab 130 Pfam PF14697 4Fe-4S dicluster domain 54 100 9.6E-9 T 13-10-2018 HCD_08005 68ad599082b16c14fcfc71a810c329ab 130 TIGRFAM TIGR02179 PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family 34 111 2.7E-30 T 13-10-2018 IPR011898 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0051539 HCD_08005 68ad599082b16c14fcfc71a810c329ab 130 Gene3D G3DSA:3.30.70.20 14 121 5.9E-14 T 13-10-2018 HCD_08015 10c535ef6dbce1ad09fd0d6b26acc9d0 314 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 51 218 2.2E-26 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 HCD_08015 10c535ef6dbce1ad09fd0d6b26acc9d0 314 SUPERFAMILY SSF52518 13 310 2.64E-72 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold HCD_08015 10c535ef6dbce1ad09fd0d6b26acc9d0 314 Gene3D G3DSA:3.40.50.970 86 312 1.4E-66 T 13-10-2018 HCD_06250 33a0bff94b3a20913dbbba7308524617 342 Pfam PF02119 Flagellar P-ring protein 21 341 2.4E-103 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 HCD_06250 33a0bff94b3a20913dbbba7308524617 342 PRINTS PR01010 Flagellar P-ring protein signature 148 166 8.5E-76 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 HCD_06250 33a0bff94b3a20913dbbba7308524617 342 PRINTS PR01010 Flagellar P-ring protein signature 21 36 8.5E-76 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 HCD_06250 33a0bff94b3a20913dbbba7308524617 342 PRINTS PR01010 Flagellar P-ring protein signature 55 70 8.5E-76 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 HCD_06250 33a0bff94b3a20913dbbba7308524617 342 PRINTS PR01010 Flagellar P-ring protein signature 119 137 8.5E-76 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 HCD_06250 33a0bff94b3a20913dbbba7308524617 342 PRINTS PR01010 Flagellar P-ring protein signature 102 119 8.5E-76 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 HCD_06250 33a0bff94b3a20913dbbba7308524617 342 PRINTS PR01010 Flagellar P-ring protein signature 174 192 8.5E-76 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 HCD_06250 33a0bff94b3a20913dbbba7308524617 342 PRINTS PR01010 Flagellar P-ring protein signature 36 51 8.5E-76 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 HCD_06250 33a0bff94b3a20913dbbba7308524617 342 PRINTS PR01010 Flagellar P-ring protein signature 236 248 8.5E-76 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 HCD_06250 33a0bff94b3a20913dbbba7308524617 342 PRINTS PR01010 Flagellar P-ring protein signature 80 99 8.5E-76 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 HCD_06250 33a0bff94b3a20913dbbba7308524617 342 Hamap MF_00416 Flagellar P-ring protein [flgI]. 1 342 33.432 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 HCD_01055 a735346e5384ece623b3eb873b9e7282 531 SUPERFAMILY SSF58104 223 517 3.01E-51 T 13-10-2018 HCD_01055 a735346e5384ece623b3eb873b9e7282 531 Gene3D G3DSA:3.30.450.290 40 174 3.7E-6 T 13-10-2018 HCD_01055 a735346e5384ece623b3eb873b9e7282 531 SMART SM00283 270 517 2.5E-24 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_01055 a735346e5384ece623b3eb873b9e7282 531 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 345 430 1.8E-28 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_01055 a735346e5384ece623b3eb873b9e7282 531 Gene3D G3DSA:1.10.287.950 203 522 1.2E-48 T 13-10-2018 HCD_00210 293ce3c5161721505928b5952985c982 335 Pfam PF12033 Protein of unknown function (DUF3519) 58 164 6.1E-12 T 13-10-2018 IPR021907 Protein of unknown function DUF3519 HCD_06515 44b48d0042d41e15a1f24dd96760138d 473 Pfam PF01856 Helicobacter outer membrane protein 330 473 1.5E-20 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06515 44b48d0042d41e15a1f24dd96760138d 473 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 358 379 2.4E-8 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06515 44b48d0042d41e15a1f24dd96760138d 473 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 429 450 2.4E-8 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06515 44b48d0042d41e15a1f24dd96760138d 473 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 318 339 2.4E-8 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00645 11be188ca3336456fe8d101bcfc1032e 150 Pfam PF14489 QueF-like protein 58 134 1.0E-33 T 13-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 HCD_00645 11be188ca3336456fe8d101bcfc1032e 150 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 23 134 1.9E-51 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 HCD_00645 11be188ca3336456fe8d101bcfc1032e 150 PIRSF PIRSF027377 4 143 1.6E-56 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 HCD_00645 11be188ca3336456fe8d101bcfc1032e 150 Gene3D G3DSA:3.30.1130.10 17 150 1.7E-50 T 13-10-2018 HCD_00645 11be188ca3336456fe8d101bcfc1032e 150 SUPERFAMILY SSF55620 20 128 5.41E-27 T 13-10-2018 HCD_00645 11be188ca3336456fe8d101bcfc1032e 150 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 150 49.792 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 HCD_05245 d63f9a064063092c2da7fc1d05a1c9a0 393 Gene3D G3DSA:3.40.640.10 62 284 7.9E-131 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 HCD_05245 d63f9a064063092c2da7fc1d05a1c9a0 393 SUPERFAMILY SSF53383 1 388 4.08E-114 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase HCD_05245 d63f9a064063092c2da7fc1d05a1c9a0 393 Gene3D G3DSA:3.90.1150.10 25 382 7.9E-131 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 HCD_05245 d63f9a064063092c2da7fc1d05a1c9a0 393 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 233 246 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 HCD_05245 d63f9a064063092c2da7fc1d05a1c9a0 393 Pfam PF00155 Aminotransferase class I and II 31 382 7.9E-72 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 HCD_05545 3eb8bada12d9f10781095b1855909613 455 Pfam PF02521 Putative outer membrane protein 15 455 1.0E-166 T 13-10-2018 IPR003678 Putative outer membrane protein HCD_07400 67bd73479b34b67f06a469957a608de4 429 Pfam PF09903 Uncharacterized protein conserved in bacteria (DUF2130) 177 421 5.4E-68 T 13-10-2018 IPR019219 Protein of unknown function DUF2130 HCD_02680 a612d463766d2e34499695e9265940a7 222 Pfam PF01168 Alanine racemase, N-terminal domain 26 220 4.0E-14 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 HCD_02680 a612d463766d2e34499695e9265940a7 222 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 222 27.151 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 HCD_02680 a612d463766d2e34499695e9265940a7 222 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 75 89 - T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 HCD_02680 a612d463766d2e34499695e9265940a7 222 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 222 9.6E-80 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 HCD_02680 a612d463766d2e34499695e9265940a7 222 SUPERFAMILY SSF51419 3 220 6.69E-59 T 13-10-2018 IPR029066 PLP-binding barrel HCD_02680 a612d463766d2e34499695e9265940a7 222 Gene3D G3DSA:3.20.20.10 3 222 1.0E-65 T 13-10-2018 IPR029066 PLP-binding barrel HCD_02680 a612d463766d2e34499695e9265940a7 222 PIRSF PIRSF004848 1 222 1.2E-68 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 HCD_06300 f5797b10bdfe85d3bc6012fb21b3ea02 245 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 5 216 4.0E-73 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 HCD_06300 f5797b10bdfe85d3bc6012fb21b3ea02 245 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 1 231 16.471 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 HCD_06300 f5797b10bdfe85d3bc6012fb21b3ea02 245 Pfam PF00902 Sec-independent protein translocase protein (TatC) 8 211 4.6E-65 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 HCD_06300 f5797b10bdfe85d3bc6012fb21b3ea02 245 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 75 93 5.3E-42 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 HCD_06300 f5797b10bdfe85d3bc6012fb21b3ea02 245 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 93 119 5.3E-42 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 HCD_06300 f5797b10bdfe85d3bc6012fb21b3ea02 245 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 144 172 5.3E-42 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 HCD_06300 f5797b10bdfe85d3bc6012fb21b3ea02 245 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 4 31 5.3E-42 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 HCD_06300 f5797b10bdfe85d3bc6012fb21b3ea02 245 ProSitePatterns PS01218 TatC family signature. 144 163 - T 13-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site HCD_06160 e1ce0afba573cc8f8969a95bd9f905dc 427 Pfam PF04932 O-Antigen ligase 196 361 3.7E-18 T 13-10-2018 IPR007016 O-antigen ligase-related HCD_01035 f4cb88edf29a661e358c38be4558032f 400 SMART SM00283 93 351 1.1E-21 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_01035 f4cb88edf29a661e358c38be4558032f 400 Gene3D G3DSA:1.10.287.950 80 366 3.0E-43 T 13-10-2018 HCD_01035 f4cb88edf29a661e358c38be4558032f 400 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 199 226 9.0E-17 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 HCD_01035 f4cb88edf29a661e358c38be4558032f 400 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 228 257 9.0E-17 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 HCD_01035 f4cb88edf29a661e358c38be4558032f 400 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 164 289 7.5E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 HCD_01035 f4cb88edf29a661e358c38be4558032f 400 SUPERFAMILY SSF58104 107 330 2.75E-45 T 13-10-2018 HCD_03035 c9039b39b42caef92fa2b4644871e166 213 SMART SM00382 25 206 1.0E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_03035 c9039b39b42caef92fa2b4644871e166 213 Pfam PF00005 ABC transporter 17 159 3.2E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_03035 c9039b39b42caef92fa2b4644871e166 213 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_03035 c9039b39b42caef92fa2b4644871e166 213 Gene3D G3DSA:3.40.50.300 1 213 1.3E-49 T 13-10-2018 HCD_03035 c9039b39b42caef92fa2b4644871e166 213 SUPERFAMILY SSF52540 3 210 1.89E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_00550 7d68aec26fcafbcfb2548b12dc0188b0 335 Gene3D G3DSA:1.20.970.10 10 183 9.4E-110 T 13-10-2018 HCD_00550 7d68aec26fcafbcfb2548b12dc0188b0 335 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 5 331 2.4E-127 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 HCD_00550 7d68aec26fcafbcfb2548b12dc0188b0 335 SUPERFAMILY SSF47648 1 64 9.03E-15 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 HCD_00550 7d68aec26fcafbcfb2548b12dc0188b0 335 Pfam PF00591 Glycosyl transferase family, a/b domain 73 322 2.0E-86 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 HCD_00550 7d68aec26fcafbcfb2548b12dc0188b0 335 Gene3D G3DSA:3.40.1030.10 68 322 9.4E-110 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 HCD_00550 7d68aec26fcafbcfb2548b12dc0188b0 335 SUPERFAMILY SSF52418 71 331 4.19E-82 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 HCD_00550 7d68aec26fcafbcfb2548b12dc0188b0 335 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 3 332 35.293 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 HCD_00550 7d68aec26fcafbcfb2548b12dc0188b0 335 Pfam PF02885 Glycosyl transferase family, helical bundle domain 2 63 4.4E-12 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 HCD_05890 fd21523c221e6f67142d05b62b30b115 70 SUPERFAMILY SSF55331 2 65 6.48E-18 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily HCD_05890 fd21523c221e6f67142d05b62b30b115 70 Pfam PF01361 Tautomerase enzyme 2 61 1.2E-23 T 13-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 HCD_05890 fd21523c221e6f67142d05b62b30b115 70 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 66 7.4E-28 T 13-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 HCD_05890 fd21523c221e6f67142d05b62b30b115 70 Gene3D G3DSA:3.30.429.10 2 68 1.4E-23 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily HCD_04935 99702d2cd6bc7126267d8dd01a4977f2 377 Pfam PF02405 Permease MlaE 161 370 1.1E-66 T 13-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 HCD_04935 99702d2cd6bc7126267d8dd01a4977f2 377 SUPERFAMILY SSF52091 13 87 8.37E-5 T 13-10-2018 IPR036513 STAS domain superfamily HCD_04935 99702d2cd6bc7126267d8dd01a4977f2 377 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 113 374 6.8E-98 T 13-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria HCD_08550 b44d49f8d74782cad74436277514f6d1 426 SUPERFAMILY SSF53335 45 242 4.9E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_08550 b44d49f8d74782cad74436277514f6d1 426 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 132 138 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_08550 b44d49f8d74782cad74436277514f6d1 426 Gene3D G3DSA:3.40.50.150 44 247 3.2E-29 T 13-10-2018 HCD_08550 b44d49f8d74782cad74436277514f6d1 426 Pfam PF05175 Methyltransferase small domain 55 180 6.6E-10 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 HCD_08550 b44d49f8d74782cad74436277514f6d1 426 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 69 83 7.6E-11 T 13-10-2018 HCD_08550 b44d49f8d74782cad74436277514f6d1 426 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 129 141 7.6E-11 T 13-10-2018 HCD_08550 b44d49f8d74782cad74436277514f6d1 426 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 152 176 7.6E-11 T 13-10-2018 HCD_01510 7f9efa20d0c1d5a592602f4903790e43 247 Pfam PF01856 Helicobacter outer membrane protein 62 247 5.7E-39 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01510 7f9efa20d0c1d5a592602f4903790e43 247 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 51 72 2.4E-25 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01510 7f9efa20d0c1d5a592602f4903790e43 247 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 110 131 2.4E-25 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01510 7f9efa20d0c1d5a592602f4903790e43 247 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 77 97 2.4E-25 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01510 7f9efa20d0c1d5a592602f4903790e43 247 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 203 224 2.4E-25 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03200 c17fecc20018ae17a1622f5036d03bc9 292 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 118 191 1.6E-7 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_03200 c17fecc20018ae17a1622f5036d03bc9 292 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 207 284 6.8E-11 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_03200 c17fecc20018ae17a1622f5036d03bc9 292 SUPERFAMILY SSF46626 62 193 5.17E-17 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_03200 c17fecc20018ae17a1622f5036d03bc9 292 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 35 287 1.0E-84 T 13-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III HCD_03200 c17fecc20018ae17a1622f5036d03bc9 292 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 46 89 2.2E-12 T 13-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal HCD_03200 c17fecc20018ae17a1622f5036d03bc9 292 SUPERFAMILY SSF46626 201 289 4.25E-15 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_03200 c17fecc20018ae17a1622f5036d03bc9 292 Gene3D G3DSA:1.10.760.10 106 197 2.0E-11 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_03200 c17fecc20018ae17a1622f5036d03bc9 292 Gene3D G3DSA:1.20.58.1490 2 99 2.2E-8 T 13-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily HCD_03200 c17fecc20018ae17a1622f5036d03bc9 292 PIRSF PIRSF000006 11 291 5.5E-72 T 13-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III HCD_03200 c17fecc20018ae17a1622f5036d03bc9 292 Gene3D G3DSA:1.10.760.10 198 292 2.8E-14 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_06495 513a22f4c99172d5b211e351aedc9ef7 243 Pfam PF02591 C4-type zinc ribbon domain 198 230 2.3E-12 T 13-10-2018 IPR003743 C4-type zinc ribbon domain HCD_00410 ff5fd196eaa4411ca0ef4fa12c0acb41 159 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 6 146 1.4E-74 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00410 ff5fd196eaa4411ca0ef4fa12c0acb41 159 Gene3D G3DSA:3.40.50.12280 1 158 7.0E-73 T 13-10-2018 HCD_00410 ff5fd196eaa4411ca0ef4fa12c0acb41 159 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 4 145 42.389 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00410 ff5fd196eaa4411ca0ef4fa12c0acb41 159 SUPERFAMILY SSF56770 5 149 1.44E-65 T 13-10-2018 HCD_00410 ff5fd196eaa4411ca0ef4fa12c0acb41 159 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 32 138 4.1E-23 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 3 14 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 SUPERFAMILY SSF53067 159 397 3.69E-86 T 13-10-2018 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 Pfam PF00871 Acetokinase family 3 390 2.6E-140 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 PIRSF PIRSF000722 1 401 1.8E-156 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 PRINTS PR00471 Acetate kinase family signature 205 226 5.2E-41 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 PRINTS PR00471 Acetate kinase family signature 323 339 5.2E-41 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 PRINTS PR00471 Acetate kinase family signature 3 14 5.2E-41 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 PRINTS PR00471 Acetate kinase family signature 301 314 5.2E-41 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 PRINTS PR00471 Acetate kinase family signature 378 390 5.2E-41 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 PRINTS PR00471 Acetate kinase family signature 175 188 5.2E-41 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 TIGRFAM TIGR00016 ackA: acetate kinase 2 394 1.5E-140 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 SUPERFAMILY SSF53067 1 197 7.77E-66 T 13-10-2018 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 Gene3D G3DSA:3.30.420.40 1 197 1.8E-73 T 13-10-2018 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 Gene3D G3DSA:3.30.420.40 198 399 6.0E-79 T 13-10-2018 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 Hamap MF_00020 Acetate kinase [ackA]. 1 400 168.463 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 HCD_06610 c93f0ef6b25ed85b67e2c81a51a0c0e8 402 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 205 222 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 HCD_06075 97bc934eadbcea1934862745905742e9 276 SUPERFAMILY SSF47807 168 256 6.07E-7 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily HCD_06075 97bc934eadbcea1934862745905742e9 276 SMART SM00475 18 255 4.6E-4 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 HCD_06075 97bc934eadbcea1934862745905742e9 276 Gene3D G3DSA:1.10.150.20 163 236 1.3E-6 T 13-10-2018 HCD_06075 97bc934eadbcea1934862745905742e9 276 SUPERFAMILY SSF88723 25 150 3.78E-14 T 13-10-2018 IPR029060 PIN-like domain superfamily HCD_06075 97bc934eadbcea1934862745905742e9 276 Gene3D G3DSA:3.40.50.1010 2 162 1.6E-13 T 13-10-2018 HCD_06075 97bc934eadbcea1934862745905742e9 276 SMART SM00279 165 200 2.0E-7 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 HCD_06075 97bc934eadbcea1934862745905742e9 276 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 36 142 4.7E-11 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 HCD_01455 17bbd47344e43f210f57928706649f50 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_01455 17bbd47344e43f210f57928706649f50 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_01455 17bbd47344e43f210f57928706649f50 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.3E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_01455 17bbd47344e43f210f57928706649f50 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 HCD_01455 17bbd47344e43f210f57928706649f50 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 1.7E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_01455 17bbd47344e43f210f57928706649f50 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.7E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_01455 17bbd47344e43f210f57928706649f50 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.7E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_01455 17bbd47344e43f210f57928706649f50 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.7E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_01455 17bbd47344e43f210f57928706649f50 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.7E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_01455 17bbd47344e43f210f57928706649f50 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.7E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_01455 17bbd47344e43f210f57928706649f50 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 1.7E-62 T 13-10-2018 HCD_01455 17bbd47344e43f210f57928706649f50 247 SUPERFAMILY SSF51735 5 247 1.77E-79 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_01455 17bbd47344e43f210f57928706649f50 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 246 8.0E-92 T 13-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 HCD_01455 17bbd47344e43f210f57928706649f50 247 Gene3D G3DSA:3.40.50.720 1 247 7.2E-79 T 13-10-2018 HCD_04255 d1adeca29e42d884f638d68598ae1439 233 Pfam PF01553 Acyltransferase 64 175 5.1E-24 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 HCD_04255 d1adeca29e42d884f638d68598ae1439 233 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 176 2.9E-42 T 13-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 HCD_04255 d1adeca29e42d884f638d68598ae1439 233 SMART SM00563 64 179 6.2E-33 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 HCD_04255 d1adeca29e42d884f638d68598ae1439 233 SUPERFAMILY SSF69593 14 212 1.7E-30 T 13-10-2018 HCD_05935 4e8d99bf1c0568c9e0d24d50e3016584 251 Pfam PF13353 4Fe-4S single cluster domain 12 168 6.6E-31 T 13-10-2018 HCD_05935 4e8d99bf1c0568c9e0d24d50e3016584 251 SUPERFAMILY SSF102114 66 219 7.72E-9 T 13-10-2018 HCD_05935 4e8d99bf1c0568c9e0d24d50e3016584 251 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 248 36.946 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 HCD_05935 4e8d99bf1c0568c9e0d24d50e3016584 251 Gene3D G3DSA:3.20.20.70 2 241 8.5E-30 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_06820 d7ed6605396622126a5b78ed9fa8abf2 493 SUPERFAMILY SSF53244 371 485 1.83E-13 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 HCD_06820 d7ed6605396622126a5b78ed9fa8abf2 493 Gene3D G3DSA:3.40.1190.10 151 367 2.0E-41 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 HCD_06820 d7ed6605396622126a5b78ed9fa8abf2 493 Gene3D G3DSA:3.90.190.20 371 486 2.5E-7 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 HCD_06820 d7ed6605396622126a5b78ed9fa8abf2 493 SUPERFAMILY SSF53623 167 368 8.77E-35 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 HCD_06820 d7ed6605396622126a5b78ed9fa8abf2 493 Pfam PF08245 Mur ligase middle domain 173 351 2.3E-28 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 HCD_07175 21c93d57c4296e11b8c6133d9d450acc 284 Gene3D G3DSA:1.10.3720.10 72 279 1.1E-25 T 13-10-2018 IPR035906 MetI-like superfamily HCD_07175 21c93d57c4296e11b8c6133d9d450acc 284 SUPERFAMILY SSF161098 77 264 7.33E-31 T 13-10-2018 IPR035906 MetI-like superfamily HCD_07175 21c93d57c4296e11b8c6133d9d450acc 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 283 1.6E-33 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 HCD_07175 21c93d57c4296e11b8c6133d9d450acc 284 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 4 54 2.7E-15 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain HCD_05165 6385284caf775ba611b329dc43ca17ca 150 Pfam PF09564 NgoBV restriction endonuclease 6 141 4.7E-30 T 13-10-2018 IPR019064 Type-2 restriction enzyme NlaIV GO:0009036|GO:0090305 HCD_07985 8eca2ebeb9457173634ae8532c8ab45f 400 Gene3D G3DSA:3.90.550.10 19 291 1.2E-20 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_07985 8eca2ebeb9457173634ae8532c8ab45f 400 SUPERFAMILY SSF53448 18 283 8.72E-20 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_07985 8eca2ebeb9457173634ae8532c8ab45f 400 Pfam PF01501 Glycosyl transferase family 8 19 265 6.4E-37 T 13-10-2018 IPR002495 Glycosyl transferase, family 8 GO:0016757 HCD_01970 b140d43aab2dd35a2cf4d07f495099ae 499 Pfam PF03553 Na+/H+ antiporter family 163 462 1.3E-66 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 HCD_02580 31002e2940f6614492a8cde36275991c 476 Pfam PF01856 Helicobacter outer membrane protein 308 476 3.9E-49 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02580 31002e2940f6614492a8cde36275991c 476 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 323 343 3.6E-35 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02580 31002e2940f6614492a8cde36275991c 476 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 344 365 3.6E-35 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02580 31002e2940f6614492a8cde36275991c 476 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 436 457 3.6E-35 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02580 31002e2940f6614492a8cde36275991c 476 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 297 318 3.6E-35 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 SUPERFAMILY SSF81901 61 205 1.83E-31 T 13-10-2018 HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 Gene3D G3DSA:1.25.40.10 20 214 3.5E-33 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 Pfam PF08238 Sel1 repeat 237 269 0.0034 T 13-10-2018 IPR006597 Sel1-like repeat HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 Pfam PF08238 Sel1 repeat 162 195 4.1E-4 T 13-10-2018 IPR006597 Sel1-like repeat HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 Pfam PF08238 Sel1 repeat 89 122 6.0E-4 T 13-10-2018 IPR006597 Sel1-like repeat HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 Pfam PF08238 Sel1 repeat 124 159 11.0 T 13-10-2018 IPR006597 Sel1-like repeat HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 Pfam PF08238 Sel1 repeat 62 86 23.0 T 13-10-2018 IPR006597 Sel1-like repeat HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 Pfam PF08238 Sel1 repeat 273 305 3.1E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 SMART SM00671 271 306 7.9E-9 T 13-10-2018 IPR006597 Sel1-like repeat HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 SMART SM00671 160 195 7.1E-10 T 13-10-2018 IPR006597 Sel1-like repeat HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 SMART SM00671 123 159 9.9E-4 T 13-10-2018 IPR006597 Sel1-like repeat HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 SMART SM00671 234 270 1.8E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 SMART SM00671 55 86 54.0 T 13-10-2018 IPR006597 Sel1-like repeat HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 SMART SM00671 87 122 1.2E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 Gene3D G3DSA:1.25.40.10 215 331 2.7E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_05705 cc8c1c1446f0a9342614a0f68635a69f 340 SUPERFAMILY SSF81901 227 327 9.94E-20 T 13-10-2018 HCD_05380 f77189f04b98842a9ad6b343f57ad7c4 201 SUPERFAMILY SSF89155 6 199 3.14E-14 T 13-10-2018 IPR036411 TorD-like superfamily HCD_05380 f77189f04b98842a9ad6b343f57ad7c4 201 Gene3D G3DSA:1.10.3480.10 5 199 1.2E-7 T 13-10-2018 HCD_04010 6970a6a90c2cbdd6fb18b62e381a91b9 61 Gene3D G3DSA:4.10.830.10 1 61 4.2E-29 T 13-10-2018 HCD_04010 6970a6a90c2cbdd6fb18b62e381a91b9 61 Hamap MF_01364_B 30S ribosomal protein S14 type Z [rpsZ]. 1 61 25.633 T 13-10-2018 IPR023053 Ribosomal protein S14, type Z HCD_04010 6970a6a90c2cbdd6fb18b62e381a91b9 61 ProSitePatterns PS00527 Ribosomal protein S14 signature. 23 45 - T 13-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 HCD_04010 6970a6a90c2cbdd6fb18b62e381a91b9 61 Pfam PF00253 Ribosomal protein S14p/S29e 9 60 2.9E-22 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04010 6970a6a90c2cbdd6fb18b62e381a91b9 61 SUPERFAMILY SSF57716 3 61 2.42E-20 T 13-10-2018 HCD_00425 31ad2e625e35c90cd3b2ec3307693e23 76 Gene3D G3DSA:3.30.110.40 1 76 2.4E-40 T 13-10-2018 IPR036868 TusA-like domain superfamily HCD_00425 31ad2e625e35c90cd3b2ec3307693e23 76 Pfam PF16514 putative NADH-ubiquinone oxidoreductase chain E 1 74 5.6E-38 T 13-10-2018 IPR032424 Putative NADH-ubiquinone oxidoreductase chain E HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 SMART SM00028 29 62 0.12 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 SMART SM00028 133 170 54.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 SMART SM00028 63 98 450.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 SMART SM00028 205 242 330.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 Gene3D G3DSA:1.25.40.10 24 290 2.3E-87 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 SMART SM00671 29 60 27.0 T 13-10-2018 IPR006597 Sel1-like repeat HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 SMART SM00671 61 96 7.8E-9 T 13-10-2018 IPR006597 Sel1-like repeat HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 SMART SM00671 133 168 1.2E-9 T 13-10-2018 IPR006597 Sel1-like repeat HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 SMART SM00671 169 204 8.9E-8 T 13-10-2018 IPR006597 Sel1-like repeat HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 SMART SM00671 205 240 2.2E-8 T 13-10-2018 IPR006597 Sel1-like repeat HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 SMART SM00671 241 276 9.6E-6 T 13-10-2018 IPR006597 Sel1-like repeat HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 SMART SM00671 97 132 4.3E-9 T 13-10-2018 IPR006597 Sel1-like repeat HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 SUPERFAMILY SSF81901 30 280 2.88E-65 T 13-10-2018 HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 Pfam PF08238 Sel1 repeat 244 275 0.011 T 13-10-2018 IPR006597 Sel1-like repeat HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 Pfam PF08238 Sel1 repeat 42 58 0.3 T 13-10-2018 IPR006597 Sel1-like repeat HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 Pfam PF08238 Sel1 repeat 172 203 0.0042 T 13-10-2018 IPR006597 Sel1-like repeat HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 Pfam PF08238 Sel1 repeat 63 95 2.8E-5 T 13-10-2018 IPR006597 Sel1-like repeat HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 Pfam PF08238 Sel1 repeat 207 239 0.28 T 13-10-2018 IPR006597 Sel1-like repeat HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 Pfam PF08238 Sel1 repeat 133 168 5.6E-5 T 13-10-2018 IPR006597 Sel1-like repeat HCD_08435 4d2b90353aedeb0536052e4dd57591cd 290 Pfam PF08238 Sel1 repeat 99 130 4.9E-5 T 13-10-2018 IPR006597 Sel1-like repeat HCD_04195 15c444745f10388a6ef58d222acd693f 294 TIGRFAM TIGR01475 ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase 8 289 3.8E-87 T 13-10-2018 IPR006371 4-hydroxybenzoate polyprenyltransferase-related HCD_04195 15c444745f10388a6ef58d222acd693f 294 Gene3D G3DSA:1.10.357.140 15 186 4.0E-43 T 13-10-2018 HCD_04195 15c444745f10388a6ef58d222acd693f 294 Pfam PF01040 UbiA prenyltransferase family 27 271 2.1E-45 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 HCD_00120 9c1970bd16e60ef9da92f07ae813ad99 123 SUPERFAMILY SSF54736 37 121 1.05E-24 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like HCD_00120 9c1970bd16e60ef9da92f07ae813ad99 123 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 28 117 21.986 T 13-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS HCD_00120 9c1970bd16e60ef9da92f07ae813ad99 123 Gene3D G3DSA:3.30.1390.10 26 123 1.5E-32 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like HCD_00120 9c1970bd16e60ef9da92f07ae813ad99 123 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 41 117 1.6E-25 T 13-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 HCD_02625 f8548400390db4375605f2ade1e0aa7d 190 Pfam PF13118 Protein of unknown function (DUF3972) 39 162 2.9E-49 T 13-10-2018 IPR025002 Domain of unknown function DUF3972 HCD_07395 624f866c9b421f6385e4fcb7bc1e8669 792 SUPERFAMILY SSF52540 2 619 3.17E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_07395 624f866c9b421f6385e4fcb7bc1e8669 792 SUPERFAMILY SSF48371 280 759 7.48E-5 T 13-10-2018 IPR016024 Armadillo-type fold HCD_07395 624f866c9b421f6385e4fcb7bc1e8669 792 Pfam PF13166 AAA domain 22 754 2.7E-133 T 13-10-2018 IPR026866 Protein CR006, P-loop domain HCD_07395 624f866c9b421f6385e4fcb7bc1e8669 792 Gene3D G3DSA:3.40.50.300 346 626 6.3E-16 T 13-10-2018 HCD_06525 8f84dd07751154b7c9e9253ce4a651fe 774 Pfam PF03432 Relaxase/Mobilisation nuclease domain 81 287 3.0E-8 T 13-10-2018 IPR005094 Endonuclease relaxase, MobA/VirD2 HCD_02445 8f84dd07751154b7c9e9253ce4a651fe 774 Pfam PF03432 Relaxase/Mobilisation nuclease domain 81 287 3.0E-8 T 13-10-2018 IPR005094 Endonuclease relaxase, MobA/VirD2 HCD_06245 0a12ea1a1177d0f165b662fbb829748d 107 Pfam PF10135 Rod binding protein 52 96 9.1E-5 T 13-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal HCD_06245 0a12ea1a1177d0f165b662fbb829748d 107 PIRSF PIRSF007248 1 103 1.5E-42 T 13-10-2018 IPR016511 Uncharacterised conserved protein UCP007248 HCD_06245 0a12ea1a1177d0f165b662fbb829748d 107 ProDom PD351196 CJ1463 JHP0230 HP0245 15 103 9.0E-38 T 13-10-2018 HCD_01285 96ad8f95b71b9edbf454b631e8021026 824 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 711 732 9.6E-7 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01285 96ad8f95b71b9edbf454b631e8021026 824 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 667 688 9.6E-7 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01285 96ad8f95b71b9edbf454b631e8021026 824 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 780 801 9.6E-7 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01285 96ad8f95b71b9edbf454b631e8021026 824 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 691 711 9.6E-7 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01515 4881241b5f0ab109a115287bb37a9581 290 Pfam PF09522 R.Pab1 restriction endonuclease 181 287 1.1E-25 T 13-10-2018 IPR018576 Restriction endonuclease, type II, Pab1 HCD_05315 a946d96431d19c777cc73192258ecc92 360 Pfam PF04055 Radical SAM superfamily 54 217 4.0E-16 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 HCD_05315 a946d96431d19c777cc73192258ecc92 360 Gene3D G3DSA:3.20.20.70 2 346 3.1E-53 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_05315 a946d96431d19c777cc73192258ecc92 360 SUPERFAMILY SSF102114 15 319 7.06E-41 T 13-10-2018 HCD_05315 a946d96431d19c777cc73192258ecc92 360 TIGRFAM TIGR03700 mena_SCO4494: putative menaquinone biosynthesis radical SAM enzyme, SCO4494 family 4 357 5.0E-160 T 13-10-2018 IPR022432 Aminodeoxyfutalosine synthase GO:0009234 KEGG: 00130+2.5.1.120|MetaCyc: PWY-7371|MetaCyc: PWY-7374 HCD_05315 a946d96431d19c777cc73192258ecc92 360 TIGRFAM TIGR00423 TIGR00423: radical SAM domain protein, CofH subfamily 45 357 2.2E-131 T 13-10-2018 IPR020050 FO synthase, subunit 2 GO:0016765 KEGG: 00680+2.5.1.77 HCD_05315 a946d96431d19c777cc73192258ecc92 360 Hamap MF_00993 Aminodeoxyfutalosine synthase [mqnE]. 1 360 47.833 T 13-10-2018 IPR022432 Aminodeoxyfutalosine synthase GO:0009234 KEGG: 00130+2.5.1.120|MetaCyc: PWY-7371|MetaCyc: PWY-7374 HCD_05315 a946d96431d19c777cc73192258ecc92 360 PIRSF PIRSF004762 1 359 1.6E-99 T 13-10-2018 HCD_01540 377061ed5d3769ff410eba1c5ffc9595 442 Pfam PF00209 Sodium:neurotransmitter symporter family 126 440 1.1E-25 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 HCD_01540 377061ed5d3769ff410eba1c5ffc9595 442 Pfam PF00209 Sodium:neurotransmitter symporter family 5 116 4.2E-19 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 HCD_01540 377061ed5d3769ff410eba1c5ffc9595 442 SUPERFAMILY SSF161070 5 441 1.44E-107 T 13-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 HCD_01540 377061ed5d3769ff410eba1c5ffc9595 442 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 8 29 3.8E-12 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 HCD_01540 377061ed5d3769ff410eba1c5ffc9595 442 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 84 110 3.8E-12 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 HCD_01540 377061ed5d3769ff410eba1c5ffc9595 442 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 308 328 3.8E-12 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 HCD_01540 377061ed5d3769ff410eba1c5ffc9595 442 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 385 404 3.8E-12 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 HCD_02025 92e4e148b850b3924246e5799ab40785 150 Pfam PF02590 Predicted SPOUT methyltransferase 7 149 3.5E-29 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 HCD_02025 92e4e148b850b3924246e5799ab40785 150 SUPERFAMILY SSF75217 1 148 4.24E-28 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases HCD_02025 92e4e148b850b3924246e5799ab40785 150 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 150 19.933 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 HCD_02025 92e4e148b850b3924246e5799ab40785 150 PIRSF PIRSF004505 1 150 6.7E-36 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 HCD_02025 92e4e148b850b3924246e5799ab40785 150 Gene3D G3DSA:3.40.1280.10 2 150 1.0E-31 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal HCD_02765 b7b8ac6c858dd8103f2c68396dbe20f2 443 Gene3D G3DSA:1.20.1250.20 3 384 2.0E-64 T 13-10-2018 HCD_02765 b7b8ac6c858dd8103f2c68396dbe20f2 443 SUPERFAMILY SSF103473 5 387 9.02E-58 T 13-10-2018 IPR036259 MFS transporter superfamily HCD_02765 b7b8ac6c858dd8103f2c68396dbe20f2 443 Pfam PF07690 Major Facilitator Superfamily 8 191 5.9E-30 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 HCD_02765 b7b8ac6c858dd8103f2c68396dbe20f2 443 Pfam PF07690 Major Facilitator Superfamily 205 388 8.4E-18 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 HCD_06030 344dac8b838aef3e697dc83660c48a1e 446 Pfam PF00675 Insulinase (Peptidase family M16) 60 161 3.5E-21 T 13-10-2018 IPR011765 Peptidase M16, N-terminal HCD_06030 344dac8b838aef3e697dc83660c48a1e 446 SUPERFAMILY SSF63411 265 445 5.41E-30 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 HCD_06030 344dac8b838aef3e697dc83660c48a1e 446 Gene3D G3DSA:3.30.830.10 28 255 4.9E-85 T 13-10-2018 HCD_06030 344dac8b838aef3e697dc83660c48a1e 446 Gene3D G3DSA:3.30.830.10 257 446 4.7E-48 T 13-10-2018 HCD_06030 344dac8b838aef3e697dc83660c48a1e 446 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 67 90 - T 13-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 HCD_06030 344dac8b838aef3e697dc83660c48a1e 446 SUPERFAMILY SSF63411 33 240 2.62E-52 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 HCD_06030 344dac8b838aef3e697dc83660c48a1e 446 Pfam PF05193 Peptidase M16 inactive domain 200 378 8.4E-33 T 13-10-2018 IPR007863 Peptidase M16, C-terminal HCD_05215 0651e5d1315354c6b3cd08701a4b20c6 788 Pfam PF03477 ATP cone domain 2 88 2.1E-14 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 HCD_05215 0651e5d1315354c6b3cd08701a4b20c6 788 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 637 659 - T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_05215 0651e5d1315354c6b3cd08701a4b20c6 788 PRINTS PR01183 Ribonucleotide reductase large chain signature 574 597 1.4E-41 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_05215 0651e5d1315354c6b3cd08701a4b20c6 788 PRINTS PR01183 Ribonucleotide reductase large chain signature 508 531 1.4E-41 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_05215 0651e5d1315354c6b3cd08701a4b20c6 788 PRINTS PR01183 Ribonucleotide reductase large chain signature 420 431 1.4E-41 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_05215 0651e5d1315354c6b3cd08701a4b20c6 788 PRINTS PR01183 Ribonucleotide reductase large chain signature 289 308 1.4E-41 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_05215 0651e5d1315354c6b3cd08701a4b20c6 788 PRINTS PR01183 Ribonucleotide reductase large chain signature 546 568 1.4E-41 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_05215 0651e5d1315354c6b3cd08701a4b20c6 788 PRINTS PR01183 Ribonucleotide reductase large chain signature 648 675 1.4E-41 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_05215 0651e5d1315354c6b3cd08701a4b20c6 788 SUPERFAMILY SSF48168 7 212 1.01E-65 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_05215 0651e5d1315354c6b3cd08701a4b20c6 788 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 136 209 5.2E-24 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_05215 0651e5d1315354c6b3cd08701a4b20c6 788 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 139 767 1.4E-189 T 13-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_05215 0651e5d1315354c6b3cd08701a4b20c6 788 Pfam PF02867 Ribonucleotide reductase, barrel domain 214 764 7.2E-173 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 HCD_05215 0651e5d1315354c6b3cd08701a4b20c6 788 SUPERFAMILY SSF51998 213 769 1.12E-177 T 13-10-2018 HCD_00810 e86ca8d31e512f2dd20765a2970afd4b 116 SMART SM01234 9 76 7.3E-20 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor HCD_00810 e86ca8d31e512f2dd20765a2970afd4b 116 Pfam PF01809 Haemolytic domain 12 73 8.8E-17 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor HCD_00810 e86ca8d31e512f2dd20765a2970afd4b 116 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 13 78 8.3E-27 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor HCD_00810 e86ca8d31e512f2dd20765a2970afd4b 116 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 25 73 2.0E-16 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor HCD_00560 cb23469bf444d66ea40351d9e5d0afd3 393 PIRSF PIRSF001413 1 393 2.7E-167 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 HCD_00560 cb23469bf444d66ea40351d9e5d0afd3 393 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 78 92 - T 13-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 HCD_00560 cb23469bf444d66ea40351d9e5d0afd3 393 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 388 50.193 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 HCD_00560 cb23469bf444d66ea40351d9e5d0afd3 393 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 5 387 9.5E-192 T 13-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 HCD_00560 cb23469bf444d66ea40351d9e5d0afd3 393 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 51 375 2.6E-48 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme HCD_00560 cb23469bf444d66ea40351d9e5d0afd3 393 SUPERFAMILY SSF53686 4 386 1.14E-143 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme HCD_00560 cb23469bf444d66ea40351d9e5d0afd3 393 Gene3D G3DSA:3.40.50.1100 8 203 1.2E-181 T 13-10-2018 HCD_00560 cb23469bf444d66ea40351d9e5d0afd3 393 Gene3D G3DSA:3.40.50.1100 52 381 1.2E-181 T 13-10-2018 HCD_01425 692739282018fea81876d6dd8dd82e95 344 Pfam PF01594 AI-2E family transporter 3 335 2.8E-64 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like HCD_07670 36df3b0e7cdcdccd162e8510af0b11cb 856 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 254 450 2.6E-43 T 13-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 HCD_07670 36df3b0e7cdcdccd162e8510af0b11cb 856 SUPERFAMILY SSF52540 474 772 5.88E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_01355 2a712d42b6fbf4089acac51266c907f3 372 SUPERFAMILY SSF50939 47 365 2.11E-7 T 13-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 HCD_01355 2a712d42b6fbf4089acac51266c907f3 372 Pfam PF13088 BNR repeat-like domain 74 344 4.5E-57 T 13-10-2018 IPR011040 Sialidase KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 HCD_06385 cc0ff66bd9791591d9260d28eb505cdd 447 Pfam PF17130 beta-barrel domain of carboxypeptidase M99 277 349 1.6E-38 T 13-10-2018 IPR033398 Carboxypeptidase M99, beta-barrel domain HCD_06385 cc0ff66bd9791591d9260d28eb505cdd 447 SUPERFAMILY SSF53187 42 287 1.06E-21 T 13-10-2018 HCD_06385 cc0ff66bd9791591d9260d28eb505cdd 447 Gene3D G3DSA:3.40.630.10 18 258 3.4E-27 T 13-10-2018 HCD_06385 cc0ff66bd9791591d9260d28eb505cdd 447 Pfam PF17033 Carboxypeptidase controlling helical cell shape catalytic 1 276 8.8E-154 T 13-10-2018 IPR031489 D,L-carboxypeptidase, peptidase domain HCD_06385 cc0ff66bd9791591d9260d28eb505cdd 447 Pfam PF17129 C-terminal domain of metallo-carboxypeptidase 350 447 2.1E-47 T 13-10-2018 IPR033397 Metallo-carboxypeptidase, C-terminal domain HCD_07525 18a4b14230cbe8b8a7a37184e9efa922 335 ProSitePatterns PS00534 Ferrochelatase signature. 202 220 - T 13-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 HCD_07525 18a4b14230cbe8b8a7a37184e9efa922 335 Gene3D G3DSA:3.40.50.1400 21 331 3.5E-82 T 13-10-2018 HCD_07525 18a4b14230cbe8b8a7a37184e9efa922 335 Hamap MF_00323 Ferrochelatase [hemH]. 19 333 31.852 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 HCD_07525 18a4b14230cbe8b8a7a37184e9efa922 335 Gene3D G3DSA:3.40.50.1400 175 314 3.5E-82 T 13-10-2018 HCD_07525 18a4b14230cbe8b8a7a37184e9efa922 335 SUPERFAMILY SSF53800 19 332 1.03E-77 T 13-10-2018 HCD_07525 18a4b14230cbe8b8a7a37184e9efa922 335 Pfam PF00762 Ferrochelatase 20 331 3.0E-88 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 HCD_07525 18a4b14230cbe8b8a7a37184e9efa922 335 TIGRFAM TIGR00109 hemH: ferrochelatase 17 333 4.6E-121 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 HCD_00880 e704ff657331efef98a9e6a35594066e 211 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 8 202 5.0E-55 T 13-10-2018 IPR014094 Penicillin-binding protein activator LpoB HCD_00880 e704ff657331efef98a9e6a35594066e 211 Pfam PF13036 Peptidoglycan-synthase activator LpoB 48 200 1.1E-34 T 13-10-2018 IPR014094 Penicillin-binding protein activator LpoB HCD_07310 ba23e24c617433114a3b3778099edee5 346 Gene3D G3DSA:1.25.40.10 221 342 7.9E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_07310 ba23e24c617433114a3b3778099edee5 346 SMART SM00028 255 288 0.0033 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 HCD_07310 ba23e24c617433114a3b3778099edee5 346 SUPERFAMILY SSF48452 216 340 1.77E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_01200 d7bdb7ef4809eba33baf7d609389147a 485 Gene3D G3DSA:1.10.645.10 1 479 1.4E-165 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_01200 d7bdb7ef4809eba33baf7d609389147a 485 Pfam PF00374 Nickel-dependent hydrogenase 40 474 1.0E-153 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 HCD_01200 d7bdb7ef4809eba33baf7d609389147a 485 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 40 65 - T 13-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 HCD_01200 d7bdb7ef4809eba33baf7d609389147a 485 SUPERFAMILY SSF56762 1 467 2.22E-125 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_06015 9bdae1b8eca7960681904279d47e3409 632 Pfam PF01973 Protein of unknown function DUF115 262 420 5.6E-30 T 13-10-2018 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like HCD_06200 44bf23b39c5e6d1b2aa2027e3b43adbe 118 Gene3D G3DSA:1.10.760.10 1 117 4.2E-8 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_06200 44bf23b39c5e6d1b2aa2027e3b43adbe 118 SUPERFAMILY SSF46626 4 113 4.46E-10 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_04790 ceafedb8045156e65b3c22785bd8b32f 714 SUPERFAMILY SSF53335 11 540 2.39E-81 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_04790 ceafedb8045156e65b3c22785bd8b32f 714 Pfam PF02384 N-6 DNA Methylase 175 482 3.6E-49 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 HCD_04790 ceafedb8045156e65b3c22785bd8b32f 714 Gene3D G3DSA:3.40.50.150 176 500 1.1E-76 T 13-10-2018 HCD_04790 ceafedb8045156e65b3c22785bd8b32f 714 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 310 316 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_08250 36bc363f7968aa3b1f7a22beb2cfc0e2 184 SUPERFAMILY SSF49777 5 178 1.57E-32 T 13-10-2018 IPR036610 PEBP-like superfamily HCD_08250 36bc363f7968aa3b1f7a22beb2cfc0e2 184 Pfam PF01161 Phosphatidylethanolamine-binding protein 34 177 2.5E-26 T 13-10-2018 IPR008914 Phosphatidylethanolamine-binding protein HCD_08250 36bc363f7968aa3b1f7a22beb2cfc0e2 184 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 24 178 3.2E-51 T 13-10-2018 IPR005247 YbhB/YbcL HCD_08250 36bc363f7968aa3b1f7a22beb2cfc0e2 184 Gene3D G3DSA:3.90.280.10 3 184 9.9E-58 T 13-10-2018 IPR036610 PEBP-like superfamily HCD_00300 34501d476be2e595330e67821755870b 255 Gene3D G3DSA:1.20.1300.10 1 250 5.6E-85 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 HCD_00300 34501d476be2e595330e67821755870b 255 PIRSF PIRSF000177 1 255 1.2E-135 T 13-10-2018 IPR004224 Fumarate reductase type B, transmembrane subunit GO:0006099 HCD_00300 34501d476be2e595330e67821755870b 255 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 111 219 4.2E-12 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 HCD_00300 34501d476be2e595330e67821755870b 255 SUPERFAMILY SSF81343 1 241 1.31E-71 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 HCD_04710 279c0f26816ee1c907d8fa13e61d922e 295 Gene3D G3DSA:3.30.420.10 67 232 2.9E-36 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 HCD_04710 279c0f26816ee1c907d8fa13e61d922e 295 SUPERFAMILY SSF53098 75 258 6.79E-43 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily HCD_04710 279c0f26816ee1c907d8fa13e61d922e 295 Pfam PF00929 Exonuclease 75 227 2.3E-31 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III HCD_04710 279c0f26816ee1c907d8fa13e61d922e 295 SMART SM00479 72 236 8.9E-48 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III HCD_04710 279c0f26816ee1c907d8fa13e61d922e 295 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 69 238 2.0E-24 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 HCD_02160 5a78421b0657a988575953f383f9512d 229 SUPERFAMILY SSF53448 1 225 7.59E-42 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_02160 5a78421b0657a988575953f383f9512d 229 TIGRFAM TIGR03584 PseF: pseudaminic acid cytidylyltransferase 4 222 7.8E-86 T 13-10-2018 IPR020039 Pseudaminic acid cytidylyltransferase KEGG: 00520+2.7.7.81|MetaCyc: PWY-6143 HCD_02160 5a78421b0657a988575953f383f9512d 229 Pfam PF02348 Cytidylyltransferase 5 204 1.2E-50 T 13-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 HCD_02160 5a78421b0657a988575953f383f9512d 229 Gene3D G3DSA:3.90.550.10 2 223 1.2E-51 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_08490 e1de6a953f91008a679650f472b9397e 687 Pfam PF02554 Carbon starvation protein CstA 32 407 2.4E-161 T 13-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 HCD_08490 e1de6a953f91008a679650f472b9397e 687 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 463 590 1.0E-31 T 13-10-2018 IPR025299 CstA, C-terminal domain HCD_04690 61d87ecff22a6a05646d3c4540070938 300 Gene3D G3DSA:3.40.50.150 16 196 5.4E-10 T 13-10-2018 HCD_04690 61d87ecff22a6a05646d3c4540070938 300 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 96 108 2.5E-5 T 13-10-2018 HCD_04690 61d87ecff22a6a05646d3c4540070938 300 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 47 61 2.5E-5 T 13-10-2018 HCD_04690 61d87ecff22a6a05646d3c4540070938 300 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 14 30 2.5E-5 T 13-10-2018 HCD_04690 61d87ecff22a6a05646d3c4540070938 300 SUPERFAMILY SSF53335 11 210 5.71E-12 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_03925 6c6674670abc25e2356253fbbb47dc6e 123 Gene3D G3DSA:3.90.120.10 1 108 8.9E-22 T 13-10-2018 HCD_03925 6c6674670abc25e2356253fbbb47dc6e 123 Pfam PF00145 C-5 cytosine-specific DNA methylase 16 116 8.6E-14 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_03925 6c6674670abc25e2356253fbbb47dc6e 123 SUPERFAMILY SSF53335 2 119 6.09E-20 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_03665 1c18092a70ebf28f453b595b6e1d301c 335 Pfam PF00953 Glycosyl transferase family 4 72 214 4.0E-25 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 HCD_06325 14c650f948b366ae1ad0ba4c1a539494 216 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 99 120 6.8E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06325 14c650f948b366ae1ad0ba4c1a539494 216 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 79 99 6.8E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06325 14c650f948b366ae1ad0ba4c1a539494 216 Pfam PF01856 Helicobacter outer membrane protein 67 216 5.9E-28 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03625 fe54a294af5171d0ef2c73b0c09959be 455 Pfam PF13435 Cytochrome c554 and c-prime 110 178 1.6E-4 T 13-10-2018 IPR023155 Cytochrome c-552/4 HCD_03625 fe54a294af5171d0ef2c73b0c09959be 455 Gene3D G3DSA:1.10.780.10 34 74 1.0E-6 T 13-10-2018 HCD_03625 fe54a294af5171d0ef2c73b0c09959be 455 SUPERFAMILY SSF48695 99 436 6.22E-49 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily HCD_03625 fe54a294af5171d0ef2c73b0c09959be 455 Gene3D G3DSA:1.20.850.10 233 454 9.3E-40 T 13-10-2018 HCD_03625 fe54a294af5171d0ef2c73b0c09959be 455 SUPERFAMILY SSF48695 45 84 2.3E-9 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily HCD_03625 fe54a294af5171d0ef2c73b0c09959be 455 Gene3D G3DSA:1.10.1130.10 140 231 2.2E-6 T 13-10-2018 HCD_03625 fe54a294af5171d0ef2c73b0c09959be 455 Pfam PF13447 Seven times multi-haem cytochrome CxxCH 201 390 1.9E-25 T 13-10-2018 HCD_02285 d3f73888a8586c280143344570b1ad3f 549 SMART SM00382 193 329 8.2E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_02285 d3f73888a8586c280143344570b1ad3f 549 SUPERFAMILY SSF140990 406 548 3.01E-12 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 HCD_02285 d3f73888a8586c280143344570b1ad3f 549 SUPERFAMILY SSF52540 157 395 1.04E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02285 d3f73888a8586c280143344570b1ad3f 549 ProSitePatterns PS00674 AAA-protein family signature. 297 315 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 HCD_02285 d3f73888a8586c280143344570b1ad3f 549 Gene3D G3DSA:1.10.8.60 329 403 8.6E-14 T 13-10-2018 HCD_02285 d3f73888a8586c280143344570b1ad3f 549 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 197 326 8.3E-42 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 HCD_02285 d3f73888a8586c280143344570b1ad3f 549 Gene3D G3DSA:3.40.50.300 149 328 1.8E-60 T 13-10-2018 HCD_02985 5ee6b56378800b3dc6d4f2a548d0468d 388 Pfam PF00589 Phage integrase family 210 370 7.9E-23 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 HCD_02985 5ee6b56378800b3dc6d4f2a548d0468d 388 Gene3D G3DSA:1.10.443.10 196 384 1.6E-37 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 HCD_02985 5ee6b56378800b3dc6d4f2a548d0468d 388 SUPERFAMILY SSF56349 99 379 1.82E-48 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 HCD_02985 5ee6b56378800b3dc6d4f2a548d0468d 388 Gene3D G3DSA:1.10.150.130 99 195 3.4E-5 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal HCD_07820 0fce67de1d319136bb93c05a8dc862f5 164 PIRSF PIRSF038996 1 164 3.9E-59 T 13-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 HCD_07820 0fce67de1d319136bb93c05a8dc862f5 164 Gene3D G3DSA:3.40.50.360 1 164 3.6E-48 T 13-10-2018 IPR029039 Flavoprotein-like superfamily HCD_07820 0fce67de1d319136bb93c05a8dc862f5 164 TIGRFAM TIGR01752 flav_long: flavodoxin 3 163 6.7E-64 T 13-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 HCD_07820 0fce67de1d319136bb93c05a8dc862f5 164 Pfam PF00258 Flavodoxin 6 155 2.0E-18 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 HCD_07820 0fce67de1d319136bb93c05a8dc862f5 164 SUPERFAMILY SSF52218 1 161 2.51E-37 T 13-10-2018 IPR029039 Flavoprotein-like superfamily HCD_06700 96b85fdce949bd04d822149f4d1b6a3b 428 Pfam PF02321 Outer membrane efflux protein 251 418 1.0E-20 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 HCD_06700 96b85fdce949bd04d822149f4d1b6a3b 428 Gene3D G3DSA:1.20.1600.10 30 422 3.9E-22 T 13-10-2018 HCD_06700 96b85fdce949bd04d822149f4d1b6a3b 428 SUPERFAMILY SSF56954 30 421 3.92E-28 T 13-10-2018 HCD_08500 349265bbc35c9a43bfabce2ceedd926b 223 SUPERFAMILY SSF161098 12 209 5.36E-34 T 13-10-2018 IPR035906 MetI-like superfamily HCD_08500 349265bbc35c9a43bfabce2ceedd926b 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 108 1.5E-17 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 HCD_08500 349265bbc35c9a43bfabce2ceedd926b 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 206 2.1E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 HCD_08500 349265bbc35c9a43bfabce2ceedd926b 223 Gene3D G3DSA:1.10.3720.10 5 220 4.5E-40 T 13-10-2018 IPR035906 MetI-like superfamily HCD_06985 99574ad24b9320613376210aa375a851 363 Gene3D G3DSA:3.20.20.70 10 363 2.5E-60 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_06985 99574ad24b9320613376210aa375a851 363 SUPERFAMILY SSF51412 9 363 3.66E-45 T 13-10-2018 HCD_06985 99574ad24b9320613376210aa375a851 363 Pfam PF03060 Nitronate monooxygenase 7 362 3.6E-115 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 HCD_01950 4a32575d6b2a9ed0ca9e80a13fb74b9b 98 SUPERFAMILY SSF53335 3 97 1.16E-18 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_01950 4a32575d6b2a9ed0ca9e80a13fb74b9b 98 Gene3D G3DSA:3.90.120.10 1 84 3.2E-40 T 13-10-2018 HCD_01950 4a32575d6b2a9ed0ca9e80a13fb74b9b 98 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 75 93 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 HCD_01950 4a32575d6b2a9ed0ca9e80a13fb74b9b 98 Pfam PF00145 C-5 cytosine-specific DNA methylase 5 94 1.6E-22 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_06415 43630cb3bf548cae134822dd48737676 551 Pfam PF00664 ABC transporter transmembrane region 19 289 7.1E-51 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 HCD_06415 43630cb3bf548cae134822dd48737676 551 Gene3D G3DSA:3.40.50.300 317 551 3.8E-72 T 13-10-2018 HCD_06415 43630cb3bf548cae134822dd48737676 551 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_06415 43630cb3bf548cae134822dd48737676 551 SUPERFAMILY SSF90123 6 322 1.29E-75 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 HCD_06415 43630cb3bf548cae134822dd48737676 551 Pfam PF00005 ABC transporter 353 501 4.9E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_06415 43630cb3bf548cae134822dd48737676 551 Gene3D G3DSA:1.20.1560.10 2 316 9.6E-82 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 HCD_06415 43630cb3bf548cae134822dd48737676 551 SMART SM00382 362 550 1.0E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_06415 43630cb3bf548cae134822dd48737676 551 SUPERFAMILY SSF52540 327 550 1.09E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_03235 11bdd944f7f22ede660f91e409ef7fbe 555 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 5 541 1.7E-244 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 HCD_03235 11bdd944f7f22ede660f91e409ef7fbe 555 Pfam PF02652 L-lactate permease 16 537 1.0E-227 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 HCD_08155 f373c763e55068953bad08de717627e6 161 SUPERFAMILY SSF53067 6 102 2.01E-7 T 13-10-2018 HCD_05085 970ec6fe497fdd59aadb6b1f416d60f5 369 Pfam PF00149 Calcineurin-like phosphoesterase 145 308 1.1E-14 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 HCD_05085 970ec6fe497fdd59aadb6b1f416d60f5 369 SUPERFAMILY SSF56300 145 367 6.16E-36 T 13-10-2018 HCD_05085 970ec6fe497fdd59aadb6b1f416d60f5 369 Gene3D G3DSA:3.60.21.10 143 326 6.7E-28 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like HCD_04585 e9421c781bae6e5811b7f75c63e8a4b3 211 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 94 115 9.5E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04585 e9421c781bae6e5811b7f75c63e8a4b3 211 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 74 94 9.5E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04585 e9421c781bae6e5811b7f75c63e8a4b3 211 Pfam PF01856 Helicobacter outer membrane protein 61 209 2.3E-27 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05960 7c9ee47ce35445ea4426dfb93bb8495e 367 Pfam PF01856 Helicobacter outer membrane protein 197 367 1.4E-41 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05960 7c9ee47ce35445ea4426dfb93bb8495e 367 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 211 231 2.6E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05960 7c9ee47ce35445ea4426dfb93bb8495e 367 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 323 344 2.6E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05960 7c9ee47ce35445ea4426dfb93bb8495e 367 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 185 206 2.6E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05960 7c9ee47ce35445ea4426dfb93bb8495e 367 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 236 257 2.6E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05280 fb0f01224b198f08c9e056c21762c6e9 142 Pfam PF00075 RNase H 5 137 3.2E-41 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 HCD_05280 fb0f01224b198f08c9e056c21762c6e9 142 Gene3D G3DSA:3.30.420.10 2 142 4.5E-49 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 HCD_05280 fb0f01224b198f08c9e056c21762c6e9 142 SUPERFAMILY SSF53098 6 138 1.39E-47 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily HCD_00350 4cf4cb4b01d1498adda1f54124c1ab68 641 SMART SM00955 212 531 1.7E-105 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 HCD_00350 4cf4cb4b01d1498adda1f54124c1ab68 641 Pfam PF00773 RNB domain 212 529 2.1E-81 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 HCD_00350 4cf4cb4b01d1498adda1f54124c1ab68 641 ProSitePatterns PS01175 Ribonuclease II family signature. 498 522 - T 13-10-2018 IPR022966 Ribonuclease II/R, conserved site HCD_00350 4cf4cb4b01d1498adda1f54124c1ab68 641 SUPERFAMILY SSF50249 177 571 3.94E-95 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_07005 34d65daf0b44396ee1747a0c9efecdde 240 Gene3D G3DSA:3.40.1160.10 1 240 4.9E-78 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily HCD_07005 34d65daf0b44396ee1747a0c9efecdde 240 PIRSF PIRSF005650 2 240 3.3E-90 T 13-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 HCD_07005 34d65daf0b44396ee1747a0c9efecdde 240 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 7 239 2.3E-98 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 HCD_07005 34d65daf0b44396ee1747a0c9efecdde 240 Pfam PF00696 Amino acid kinase family 8 218 3.8E-35 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 HCD_07005 34d65daf0b44396ee1747a0c9efecdde 240 SUPERFAMILY SSF53633 6 231 2.23E-67 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily HCD_07005 34d65daf0b44396ee1747a0c9efecdde 240 Hamap MF_01220_B Uridylate kinase [pyrH]. 5 240 42.409 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 HCD_03785 e78f230738ae607ee9b596d2d09f6c91 109 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 3 109 4.3E-43 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 HCD_03785 e78f230738ae607ee9b596d2d09f6c91 109 Pfam PF02049 Flagellar hook-basal body complex protein FliE 25 109 5.1E-25 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 HCD_03785 e78f230738ae607ee9b596d2d09f6c91 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 94 107 1.9E-12 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 HCD_03785 e78f230738ae607ee9b596d2d09f6c91 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 39 55 1.9E-12 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 HCD_03785 e78f230738ae607ee9b596d2d09f6c91 109 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 73 89 1.9E-12 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 HCD_03785 e78f230738ae607ee9b596d2d09f6c91 109 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 2 109 18.067 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 HCD_08789 5d7c0543ce0c22ebc75a4b1b27d2f6bf 259 SUPERFAMILY SSF52540 8 167 1.19E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_08789 5d7c0543ce0c22ebc75a4b1b27d2f6bf 259 Gene3D G3DSA:3.40.50.300 1 233 1.0E-6 T 13-10-2018 HCD_04655 ddd47adacde8eab89162f87cbfa59d15 614 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 88 94 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_04655 ddd47adacde8eab89162f87cbfa59d15 614 SUPERFAMILY SSF53335 59 356 4.28E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_04655 ddd47adacde8eab89162f87cbfa59d15 614 Pfam PF01555 DNA methylase 85 341 1.5E-34 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 HCD_04655 ddd47adacde8eab89162f87cbfa59d15 614 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 307 321 1.4E-13 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 HCD_04655 ddd47adacde8eab89162f87cbfa59d15 614 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 284 306 1.4E-13 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 HCD_04655 ddd47adacde8eab89162f87cbfa59d15 614 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 85 97 1.4E-13 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 HCD_04655 ddd47adacde8eab89162f87cbfa59d15 614 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 150 169 1.4E-13 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 HCD_02365 e3ad9896a5914732c80cb5e7297fe794 223 Pfam PF04028 Domain of unknown function (DUF374) 65 130 1.0E-25 T 13-10-2018 IPR007172 Domain of unknown function DUF374 HCD_02365 e3ad9896a5914732c80cb5e7297fe794 223 ProDom PD032436 LIPOPROTEIN UNCHARACTERIZED PROBABLE CJ0457C SIMILAR TRANSFERASE BACTERIA PRECURSOR SIGNAL CC0304 41 129 1.0E-35 T 13-10-2018 IPR007172 Domain of unknown function DUF374 HCD_00165 71d9393831eb3ff8ba56a7ff69f897dc 407 Gene3D G3DSA:2.40.37.10 9 403 2.2E-140 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 HCD_00165 71d9393831eb3ff8ba56a7ff69f897dc 407 SUPERFAMILY SSF50621 234 393 3.56E-25 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 HCD_00165 71d9393831eb3ff8ba56a7ff69f897dc 407 TIGRFAM TIGR01047 nspC: carboxynorspermidine decarboxylase 9 407 1.0E-185 T 13-10-2018 IPR005730 Carboxynorspermidine decarboxylase GO:0016831|GO:0045312 KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 HCD_00165 71d9393831eb3ff8ba56a7ff69f897dc 407 Gene3D G3DSA:3.20.20.10 18 265 2.2E-140 T 13-10-2018 IPR029066 PLP-binding barrel HCD_00165 71d9393831eb3ff8ba56a7ff69f897dc 407 SUPERFAMILY SSF51419 20 268 3.71E-35 T 13-10-2018 IPR029066 PLP-binding barrel HCD_00165 71d9393831eb3ff8ba56a7ff69f897dc 407 PIRSF PIRSF038941 1 407 1.2E-150 T 13-10-2018 IPR005730 Carboxynorspermidine decarboxylase GO:0016831|GO:0045312 KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 HCD_00165 71d9393831eb3ff8ba56a7ff69f897dc 407 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 141 365 1.0E-10 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 HCD_01780 6f29e72e5cf35d3bb4f51ba94cf32172 241 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 13 209 7.8E-41 T 13-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain HCD_05645 37a27998596a2fa67c4d04aff6566993 177 SUPERFAMILY SSF53218 3 159 6.02E-48 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily HCD_05645 37a27998596a2fa67c4d04aff6566993 177 SMART SM00852 7 153 4.8E-30 T 13-10-2018 IPR001453 MoaB/Mog domain HCD_05645 37a27998596a2fa67c4d04aff6566993 177 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 147 8.1E-44 T 13-10-2018 IPR001453 MoaB/Mog domain HCD_05645 37a27998596a2fa67c4d04aff6566993 177 Gene3D G3DSA:3.40.980.10 1 176 8.3E-64 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily HCD_05645 37a27998596a2fa67c4d04aff6566993 177 Pfam PF00994 Probable molybdopterin binding domain 7 151 1.1E-32 T 13-10-2018 IPR001453 MoaB/Mog domain HCD_05645 37a27998596a2fa67c4d04aff6566993 177 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 69 82 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 HCD_06190 166462a20ed429d04c291f384d40b102 588 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 540 561 1.2E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06190 166462a20ed429d04c291f384d40b102 588 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 448 468 1.2E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06190 166462a20ed429d04c291f384d40b102 588 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 424 445 1.2E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06365 1a619369e5cba5720d1dcae118764061 73 PRINTS PR00944 Copper ion binding protein signature 40 52 5.7E-13 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 HCD_06365 1a619369e5cba5720d1dcae118764061 73 PRINTS PR00944 Copper ion binding protein signature 52 65 5.7E-13 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 HCD_06365 1a619369e5cba5720d1dcae118764061 73 PRINTS PR00944 Copper ion binding protein signature 2 14 5.7E-13 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 HCD_06365 1a619369e5cba5720d1dcae118764061 73 PRINTS PR00944 Copper ion binding protein signature 14 27 5.7E-13 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 HCD_06365 1a619369e5cba5720d1dcae118764061 73 PRINTS PR00944 Copper ion binding protein signature 27 40 5.7E-13 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 HCD_06365 1a619369e5cba5720d1dcae118764061 73 Gene3D G3DSA:3.30.70.100 1 67 6.5E-14 T 13-10-2018 HCD_06365 1a619369e5cba5720d1dcae118764061 73 SUPERFAMILY SSF55008 1 67 4.19E-16 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 HCD_06365 1a619369e5cba5720d1dcae118764061 73 Pfam PF00403 Heavy-metal-associated domain 5 64 1.9E-11 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 HCD_06365 1a619369e5cba5720d1dcae118764061 73 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 2 65 1.5E-19 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 HCD_01730 c982e29d8d1114b970b5b95e6d4e42b2 286 Pfam PF12323 Helix-turn-helix domain 1 47 1.3E-13 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_02480 c982e29d8d1114b970b5b95e6d4e42b2 286 Pfam PF12323 Helix-turn-helix domain 1 47 1.3E-13 T 13-10-2018 IPR021027 Transposase, putative, helix-turn-helix domain HCD_05720 92ffefa625f8100005bcf4d5afacdadc 375 Pfam PF00155 Aminotransferase class I and II 23 339 2.6E-33 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 HCD_05720 92ffefa625f8100005bcf4d5afacdadc 375 SUPERFAMILY SSF53383 25 370 1.83E-66 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase HCD_05720 92ffefa625f8100005bcf4d5afacdadc 375 Gene3D G3DSA:3.90.1150.10 8 362 2.6E-133 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 HCD_05720 92ffefa625f8100005bcf4d5afacdadc 375 Gene3D G3DSA:3.40.640.10 36 276 2.6E-133 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 HCD_04140 04d7c3dca5f2513383ec19cb4ee903e5 86 Pfam PF04221 RelB antitoxin 5 69 5.4E-10 T 13-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ HCD_04140 04d7c3dca5f2513383ec19cb4ee903e5 86 Gene3D G3DSA:1.10.1220.10 1 45 6.8E-8 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 HCD_04925 da298f3da4657f618a6d6f50340cd0de 297 PIRSF PIRSF035875 10 285 9.6E-31 T 13-10-2018 IPR017039 Virulence factor BrkB HCD_04925 da298f3da4657f618a6d6f50340cd0de 297 Pfam PF03631 Virulence factor BrkB 35 273 3.6E-38 T 13-10-2018 IPR017039 Virulence factor BrkB HCD_04925 da298f3da4657f618a6d6f50340cd0de 297 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 22 278 3.5E-84 T 13-10-2018 IPR017039 Virulence factor BrkB HCD_00805 681b494c738231ac269c6698f7922072 173 Pfam PF00825 Ribonuclease P 17 149 8.0E-19 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 HCD_00805 681b494c738231ac269c6698f7922072 173 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 14 155 2.2E-38 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 HCD_00805 681b494c738231ac269c6698f7922072 173 SUPERFAMILY SSF54211 17 157 3.29E-20 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold HCD_00805 681b494c738231ac269c6698f7922072 173 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 86 149 5.0E-6 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 HCD_00805 681b494c738231ac269c6698f7922072 173 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 13 155 12.837 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 HCD_04075 9b5a9bfb450fbec16a776eabaf87a4a2 191 Pfam PF00297 Ribosomal protein L3 44 160 1.4E-13 T 13-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_04075 9b5a9bfb450fbec16a776eabaf87a4a2 191 SUPERFAMILY SSF50447 2 189 3.62E-48 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily HCD_04075 9b5a9bfb450fbec16a776eabaf87a4a2 191 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 189 1.6E-54 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_04075 9b5a9bfb450fbec16a776eabaf87a4a2 191 Gene3D G3DSA:2.40.30.10 115 190 1.9E-6 T 13-10-2018 HCD_04490 e2bdab6ef5c25501ca986aeaf7375031 408 Pfam PF03616 Sodium/glutamate symporter 4 373 4.4E-161 T 13-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 HCD_04490 e2bdab6ef5c25501ca986aeaf7375031 408 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 4 404 1.8E-198 T 13-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 HCD_04490 e2bdab6ef5c25501ca986aeaf7375031 408 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 4 404 23.884 T 13-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 HCD_04940 3881a51ca113ffc3b88b15dca89cf923 257 SMART SM00382 30 220 2.3E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_04940 3881a51ca113ffc3b88b15dca89cf923 257 Pfam PF00005 ABC transporter 23 171 3.2E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_04940 3881a51ca113ffc3b88b15dca89cf923 257 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 HCD_04940 3881a51ca113ffc3b88b15dca89cf923 257 SUPERFAMILY SSF52540 5 236 1.13E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04940 3881a51ca113ffc3b88b15dca89cf923 257 Gene3D G3DSA:3.40.50.300 3 251 5.1E-62 T 13-10-2018 HCD_01575 06a911df2b0aabc23b486a0781438402 281 SUPERFAMILY SSF159594 55 275 9.94E-88 T 13-10-2018 HCD_01575 06a911df2b0aabc23b486a0781438402 281 PIRSF PIRSF019714 1 277 1.8E-104 T 13-10-2018 IPR007876 Neuraminyllactose-binding hemagglutinin GO:0009279 HCD_01575 06a911df2b0aabc23b486a0781438402 281 Pfam PF05211 Neuraminyllactose-binding hemagglutinin precursor (NLBH) 21 275 1.1E-109 T 13-10-2018 IPR007876 Neuraminyllactose-binding hemagglutinin GO:0009279 HCD_01575 06a911df2b0aabc23b486a0781438402 281 Gene3D G3DSA:3.30.160.180 53 281 5.1E-102 T 13-10-2018 IPR038531 Neuraminyllactose-binding hemagglutinin superfamily HCD_06450 aa9bcc81f308a0a482daac94a9f40179 772 Pfam PF12705 PD-(D/E)XK nuclease superfamily 530 771 4.3E-32 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type HCD_06450 aa9bcc81f308a0a482daac94a9f40179 772 SUPERFAMILY SSF52980 529 705 4.24E-6 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 HCD_06450 aa9bcc81f308a0a482daac94a9f40179 772 Gene3D G3DSA:3.90.320.10 519 772 8.6E-12 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal HCD_06450 aa9bcc81f308a0a482daac94a9f40179 772 SUPERFAMILY SSF52540 244 497 4.67E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02085 5d5641ffbc3e607374fd263f29b5fea1 227 SMART SM00014 107 217 3.3E-22 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase HCD_02085 5d5641ffbc3e607374fd263f29b5fea1 227 Pfam PF01569 PAP2 superfamily 105 219 1.2E-20 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase HCD_02085 5d5641ffbc3e607374fd263f29b5fea1 227 SUPERFAMILY SSF48317 23 219 3.79E-37 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily HCD_02085 5d5641ffbc3e607374fd263f29b5fea1 227 Gene3D G3DSA:1.20.144.10 18 136 1.3E-7 T 13-10-2018 HCD_02085 5d5641ffbc3e607374fd263f29b5fea1 227 Gene3D G3DSA:1.20.144.10 137 227 2.4E-22 T 13-10-2018 HCD_03620 8d55ee2bf04ff13898e443753857987c 200 Gene3D G3DSA:1.10.3820.10 3 182 5.7E-32 T 13-10-2018 IPR038266 NapC/NirT cytochrome c superfamily HCD_03620 8d55ee2bf04ff13898e443753857987c 200 SUPERFAMILY SSF48695 9 166 5.1E-19 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily HCD_03620 8d55ee2bf04ff13898e443753857987c 200 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 8 174 1.0E-34 T 13-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal HCD_03620 8d55ee2bf04ff13898e443753857987c 200 PIRSF PIRSF000013 2 181 4.6E-16 T 13-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 HCD_07295 96c228b711b2efbac8eabb7b7b80dd2d 66 Pfam PF04316 Anti-sigma-28 factor, FlgM 29 61 5.8E-7 T 13-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal HCD_07295 96c228b711b2efbac8eabb7b7b80dd2d 66 SUPERFAMILY SSF101498 23 62 4.71E-7 T 13-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily HCD_02335 82e4b904bbb1a42446a67c82e5413128 184 Pfam PF00218 Indole-3-glycerol phosphate synthase 87 163 1.1E-7 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 HCD_02335 82e4b904bbb1a42446a67c82e5413128 184 SUPERFAMILY SSF51366 67 163 2.17E-9 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 HCD_02335 82e4b904bbb1a42446a67c82e5413128 184 Gene3D G3DSA:3.20.20.70 83 173 2.9E-11 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 HCD_03060 4f8078305550728773f15a1950ed9f03 241 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 10 219 8.9E-22 T 13-10-2018 HCD_04740 e30ca57dfbea1e29eacb4d76e787274b 558 Pfam PF03235 Protein of unknown function DUF262 15 221 5.0E-37 T 13-10-2018 IPR004919 Domain of unknown function DUF262 HCD_04740 e30ca57dfbea1e29eacb4d76e787274b 558 Pfam PF07510 Protein of unknown function (DUF1524) 401 550 4.2E-21 T 13-10-2018 IPR011089 Domain of unknown function DUF1524 HCD_06905 316d15240055876962bbe8d5c18f9fe7 119 SUPERFAMILY SSF160214 27 118 1.57E-21 T 13-10-2018 IPR035924 FlaG-like superfamily HCD_06905 316d15240055876962bbe8d5c18f9fe7 119 Gene3D G3DSA:3.30.160.170 17 115 4.5E-13 T 13-10-2018 IPR035924 FlaG-like superfamily HCD_06905 316d15240055876962bbe8d5c18f9fe7 119 Pfam PF03646 FlaG protein 27 117 2.1E-21 T 13-10-2018 IPR005186 FlaG protein HCD_00445 b4123a3d3b09fbc25e83b3611c6be602 222 Pfam PF12838 4Fe-4S dicluster domain 81 133 9.1E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain HCD_00445 b4123a3d3b09fbc25e83b3611c6be602 222 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 121 132 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site HCD_00445 b4123a3d3b09fbc25e83b3611c6be602 222 SUPERFAMILY SSF46548 33 147 1.78E-22 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 HCD_00445 b4123a3d3b09fbc25e83b3611c6be602 222 Gene3D G3DSA:3.30.70.3270 54 189 5.3E-32 T 13-10-2018 HCD_00445 b4123a3d3b09fbc25e83b3611c6be602 222 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 37 158 2.8E-49 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00445 b4123a3d3b09fbc25e83b3611c6be602 222 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 28 185 25.948 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_05485 59d1434e15e947f442372acffd86d6e9 330 Pfam PF01856 Helicobacter outer membrane protein 167 330 9.3E-43 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05485 59d1434e15e947f442372acffd86d6e9 330 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 156 177 1.8E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05485 59d1434e15e947f442372acffd86d6e9 330 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 290 311 1.8E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05485 59d1434e15e947f442372acffd86d6e9 330 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 201 222 1.8E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06725 8e13077cfe8f063dc5fd5eb64af00f3f 167 SUPERFAMILY SSF47240 1 159 3.08E-51 T 13-10-2018 IPR009078 Ferritin-like superfamily HCD_06725 8e13077cfe8f063dc5fd5eb64af00f3f 167 Pfam PF00210 Ferritin-like domain 7 144 1.4E-36 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 HCD_06725 8e13077cfe8f063dc5fd5eb64af00f3f 167 Gene3D G3DSA:1.20.1260.10 1 167 2.1E-48 T 13-10-2018 IPR012347 Ferritin-like HCD_04445 e6f71bbc7ccda0c3f85e317df046adac 581 Pfam PF07598 Protein of unknown function (DUF1561) 6 570 8.1E-107 T 13-10-2018 IPR011455 Protein of unknown function DUF1561 HCD_02175 6a4aca287ec19fcb5ad3f7da8da18d62 181 Pfam PF13091 PLD-like domain 41 174 6.1E-28 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 HCD_02175 6a4aca287ec19fcb5ad3f7da8da18d62 181 Gene3D G3DSA:3.30.870.10 19 177 1.9E-35 T 13-10-2018 HCD_02175 6a4aca287ec19fcb5ad3f7da8da18d62 181 SMART SM00155 120 147 9.7E-8 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 HCD_02175 6a4aca287ec19fcb5ad3f7da8da18d62 181 SUPERFAMILY SSF56024 25 178 8.37E-29 T 13-10-2018 HCD_06335 27c635818f83176021c572ab0a2c7e44 324 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 29 321 6.3E-56 T 13-10-2018 HCD_06335 27c635818f83176021c572ab0a2c7e44 324 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 6 316 1.1E-94 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 HCD_06335 27c635818f83176021c572ab0a2c7e44 324 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 6 322 27.731 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 HCD_06335 27c635818f83176021c572ab0a2c7e44 324 Gene3D G3DSA:3.40.50.150 135 324 1.2E-44 T 13-10-2018 HCD_06335 27c635818f83176021c572ab0a2c7e44 324 SUPERFAMILY SSF53335 99 320 1.76E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_06335 27c635818f83176021c572ab0a2c7e44 324 PIRSF PIRSF000401 18 324 1.4E-86 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 HCD_01080 ebb16cab6162bdbb14e3b184a56f8be8 414 Pfam PF13023 HD domain 212 391 4.6E-41 T 13-10-2018 IPR006674 HD domain HCD_01080 ebb16cab6162bdbb14e3b184a56f8be8 414 SUPERFAMILY SSF109604 205 387 2.88E-28 T 13-10-2018 HCD_01080 ebb16cab6162bdbb14e3b184a56f8be8 414 Gene3D G3DSA:1.10.3210.10 206 401 1.1E-31 T 13-10-2018 HCD_01080 ebb16cab6162bdbb14e3b184a56f8be8 414 Gene3D G3DSA:1.10.3210.10 25 205 4.6E-18 T 13-10-2018 HCD_06055 7922467cd7595c2c5f0b81859425553f 475 ProSitePatterns PS00218 Amino acid permeases signature. 46 77 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 HCD_06055 7922467cd7595c2c5f0b81859425553f 475 PIRSF PIRSF006060 1 474 6.4E-79 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 HCD_06055 7922467cd7595c2c5f0b81859425553f 475 Gene3D G3DSA:1.20.1740.10 11 474 6.1E-65 T 13-10-2018 HCD_06055 7922467cd7595c2c5f0b81859425553f 475 Pfam PF00324 Amino acid permease 21 465 3.7E-103 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 HCD_00695 01e5f330d0d914abe357be36e1ef7a9b 436 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 144 353 2.1E-67 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_00695 01e5f330d0d914abe357be36e1ef7a9b 436 SMART SM00382 156 337 7.2E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_00695 01e5f330d0d914abe357be36e1ef7a9b 436 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 344 353 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_00695 01e5f330d0d914abe357be36e1ef7a9b 436 Gene3D G3DSA:3.40.50.12240 14 436 9.0E-131 T 13-10-2018 HCD_00695 01e5f330d0d914abe357be36e1ef7a9b 436 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 3 433 3.4E-191 T 13-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 HCD_00695 01e5f330d0d914abe357be36e1ef7a9b 436 SUPERFAMILY SSF52540 92 357 6.61E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_08485 3953e78421f8fe7153dad87b8c1e70d6 476 Pfam PF02521 Putative outer membrane protein 15 476 2.1E-154 T 13-10-2018 IPR003678 Putative outer membrane protein HCD_06290 a8ed8748105b030e3334c3dc18c725fc 294 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 84 97 2.2E-10 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_06290 a8ed8748105b030e3334c3dc18c725fc 294 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 38 52 2.2E-10 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_06290 a8ed8748105b030e3334c3dc18c725fc 294 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 264 282 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 HCD_06290 a8ed8748105b030e3334c3dc18c725fc 294 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 1 282 1.9E-73 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_06290 a8ed8748105b030e3334c3dc18c725fc 294 SUPERFAMILY SSF53335 1 287 8.86E-67 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_06290 a8ed8748105b030e3334c3dc18c725fc 294 Pfam PF00145 C-5 cytosine-specific DNA methylase 1 284 2.9E-68 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_06420 2b4ca4a5040be89d740e94a9906dca6d 479 Pfam PF02521 Putative outer membrane protein 19 479 4.8E-174 T 13-10-2018 IPR003678 Putative outer membrane protein HCD_05100 bb709e05472b54c0e54da92a62e1d096 102 Gene3D G3DSA:1.10.443.10 3 100 3.8E-13 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 HCD_05100 bb709e05472b54c0e54da92a62e1d096 102 Pfam PF00589 Phage integrase family 39 84 2.7E-7 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 HCD_05100 bb709e05472b54c0e54da92a62e1d096 102 SUPERFAMILY SSF56349 32 91 2.0E-14 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 HCD_00440 8f30dc7901a8a04cbf021dcaf473eafa 329 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 50 65 - T 13-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00440 8f30dc7901a8a04cbf021dcaf473eafa 329 Pfam PF00146 NADH dehydrogenase 11 323 2.9E-110 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00440 8f30dc7901a8a04cbf021dcaf473eafa 329 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 4 329 22.839 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00970 c0297ab7d0c637f3aad3a590097fab5c 1876 Pfam PF12033 Protein of unknown function (DUF3519) 1114 1199 1.3E-17 T 13-10-2018 IPR021907 Protein of unknown function DUF3519 HCD_08465 85884aefcdd562b524822a162ad54ed4 349 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 69 81 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 HCD_08465 85884aefcdd562b524822a162ad54ed4 349 Gene3D G3DSA:3.90.120.10 148 332 3.3E-92 T 13-10-2018 HCD_08465 85884aefcdd562b524822a162ad54ed4 349 Gene3D G3DSA:3.40.50.150 6 336 3.3E-92 T 13-10-2018 HCD_08465 85884aefcdd562b524822a162ad54ed4 349 Pfam PF00145 C-5 cytosine-specific DNA methylase 3 343 3.0E-73 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08465 85884aefcdd562b524822a162ad54ed4 349 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 5 341 4.7E-69 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08465 85884aefcdd562b524822a162ad54ed4 349 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 152 165 3.3E-17 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08465 85884aefcdd562b524822a162ad54ed4 349 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 4 20 3.3E-17 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08465 85884aefcdd562b524822a162ad54ed4 349 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 106 120 3.3E-17 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 HCD_08465 85884aefcdd562b524822a162ad54ed4 349 SUPERFAMILY SSF53335 1 344 3.99E-94 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_00675 d7d7915b32744d76e0c273f7efcf97c4 319 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 133 139 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_00675 d7d7915b32744d76e0c273f7efcf97c4 319 Pfam PF13651 Adenine-specific methyltransferase EcoRI 9 316 1.5E-123 T 13-10-2018 IPR025247 Adenine-specific methylase EcoRI HCD_07730 d79a30c9b4049ef3c2ec76ecde194b08 218 Gene3D G3DSA:3.40.50.300 7 120 1.3E-15 T 13-10-2018 HCD_07730 d79a30c9b4049ef3c2ec76ecde194b08 218 SUPERFAMILY SSF52540 46 119 1.71E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_07730 d79a30c9b4049ef3c2ec76ecde194b08 218 Pfam PF13177 DNA polymerase III, delta subunit 37 118 2.3E-12 T 13-10-2018 HCD_07880 7c2fd45052274ad8a606b9a572041ac0 111 SUPERFAMILY SSF54814 38 81 8.63E-5 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 HCD_07880 7c2fd45052274ad8a606b9a572041ac0 111 Pfam PF13083 KH domain 25 96 2.0E-16 T 13-10-2018 HCD_07320 d1b34ff4a617ecc1da84ca36fead37f2 418 Pfam PF07676 WD40-like Beta Propeller Repeat 268 303 2.8E-5 T 13-10-2018 IPR011659 WD40-like Beta Propeller HCD_07320 d1b34ff4a617ecc1da84ca36fead37f2 418 SUPERFAMILY SSF69304 155 385 4.58E-21 T 13-10-2018 HCD_07320 d1b34ff4a617ecc1da84ca36fead37f2 418 Gene3D G3DSA:2.120.10.30 154 418 1.1E-28 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like HCD_07320 d1b34ff4a617ecc1da84ca36fead37f2 418 SUPERFAMILY SSF52964 40 126 3.66E-5 T 13-10-2018 HCD_04470 af3c6d78d49356f667905acc0c3525e9 145 PIRSF PIRSF015875 1 145 1.5E-64 T 13-10-2018 IPR007418 Protein of unknown function DUF474 HCD_01495 afa90ed7d7dc05d51daaccc6961f36cc 183 Pfam PF03748 Flagellar basal body-associated protein FliL 87 183 7.0E-23 T 13-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 HCD_06620 bb1623d4dca3e247559a69a5578c8ea5 503 Gene3D G3DSA:3.30.750.140 365 472 4.8E-9 T 13-10-2018 IPR038610 FliK-like, C-terminal domain superfamily HCD_06620 bb1623d4dca3e247559a69a5578c8ea5 503 Pfam PF02120 Flagellar hook-length control protein FliK 383 463 5.4E-14 T 13-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal HCD_06105 525875754b7b04fae12b69d0629f16d6 164 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 21 137 1.8E-20 T 13-10-2018 IPR019223 Domain of unknown function DUF2147 HCD_06105 525875754b7b04fae12b69d0629f16d6 164 Gene3D G3DSA:2.40.128.520 16 161 1.7E-54 T 13-10-2018 HCD_00335 e2b4c2fc6c4bce8205ef960b75ea5ae3 178 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 178 6.4E-51 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 HCD_00335 e2b4c2fc6c4bce8205ef960b75ea5ae3 178 Hamap MF_00984 Single-stranded DNA-binding protein. 2 109 31.273 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 HCD_00335 e2b4c2fc6c4bce8205ef960b75ea5ae3 178 Gene3D G3DSA:2.40.50.140 1 121 1.1E-35 T 13-10-2018 HCD_00335 e2b4c2fc6c4bce8205ef960b75ea5ae3 178 SUPERFAMILY SSF50249 1 178 1.2E-44 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_00335 e2b4c2fc6c4bce8205ef960b75ea5ae3 178 PIRSF PIRSF002070 1 163 1.0E-30 T 13-10-2018 HCD_00335 e2b4c2fc6c4bce8205ef960b75ea5ae3 178 Pfam PF00436 Single-strand binding protein family 2 105 6.9E-32 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 HCD_01885 8b4e94baea4b96b05fb14f84da640b84 618 Pfam PF03961 Flagellar Assembly Protein A 214 581 2.9E-11 T 13-10-2018 IPR005646 Flagellar assembly protein A HCD_05740 4ec4ea56c64592d9036975ff76a9e92d 274 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 3 219 1.0E-47 T 13-10-2018 IPR002654 Glycosyl transferase, family 25 HCD_07655 d3b214c35a0bce8718685ae17c9c4b24 502 Pfam PF03524 Conjugal transfer protein 126 391 2.2E-26 T 13-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX HCD_07655 d3b214c35a0bce8718685ae17c9c4b24 502 Gene3D G3DSA:2.60.40.2500 295 395 1.7E-13 T 13-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily HCD_05975 f9ba9790f2d4b96c13829914b0a6a402 413 Gene3D G3DSA:1.20.1530.20 2 402 9.4E-70 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily HCD_05975 f9ba9790f2d4b96c13829914b0a6a402 413 Pfam PF00999 Sodium/hydrogen exchanger family 9 394 6.2E-55 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 HCD_07690 b93830ac98955e15a78fda77784c1d77 112 Gene3D G3DSA:3.40.250.10 1 108 1.3E-26 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily HCD_07690 b93830ac98955e15a78fda77784c1d77 112 SMART SM00450 3 99 1.2E-16 T 13-10-2018 IPR001763 Rhodanese-like domain HCD_07690 b93830ac98955e15a78fda77784c1d77 112 SUPERFAMILY SSF52821 15 101 1.07E-20 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily HCD_07690 b93830ac98955e15a78fda77784c1d77 112 Pfam PF00581 Rhodanese-like domain 16 93 6.1E-11 T 13-10-2018 IPR001763 Rhodanese-like domain HCD_01920 1ab2896bd671c20ca6a21fd7164e45f0 651 Pfam PF09491 AlwI restriction endonuclease 86 627 4.5E-67 T 13-10-2018 IPR018573 Restriction endonuclease, type II, AlwI HCD_01920 1ab2896bd671c20ca6a21fd7164e45f0 651 Gene3D G3DSA:3.40.91.50 449 650 9.3E-31 T 13-10-2018 HCD_01800 6f58e0ae8f52ce499f562f46d6453e8f 145 TIGRFAM TIGR00576 dut: dUTP diphosphatase 2 141 2.4E-55 T 13-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 HCD_01800 6f58e0ae8f52ce499f562f46d6453e8f 145 Pfam PF00692 dUTPase 11 141 2.5E-31 T 13-10-2018 IPR029054 dUTPase-like HCD_01800 6f58e0ae8f52ce499f562f46d6453e8f 145 Gene3D G3DSA:2.70.40.10 1 142 6.2E-52 T 13-10-2018 IPR036157 dUTPase-like superfamily HCD_01800 6f58e0ae8f52ce499f562f46d6453e8f 145 SUPERFAMILY SSF51283 2 142 4.71E-46 T 13-10-2018 IPR036157 dUTPase-like superfamily HCD_01800 6f58e0ae8f52ce499f562f46d6453e8f 145 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 1 142 28.178 T 13-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 HCD_07015 b610e333070471ec05d27573419fc4e1 489 SUPERFAMILY SSF109998 40 226 1.73E-18 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily HCD_07015 b610e333070471ec05d27573419fc4e1 489 Pfam PF13145 PPIC-type PPIASE domain 244 361 8.1E-18 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 HCD_07015 b610e333070471ec05d27573419fc4e1 489 Pfam PF13624 SurA N-terminal domain 1 165 3.8E-41 T 13-10-2018 HCD_03735 3b1a4585d63761edeec7d43e9ba4ca66 187 Gene3D G3DSA:2.60.450.10 28 163 3.5E-18 T 13-10-2018 HCD_03735 3b1a4585d63761edeec7d43e9ba4ca66 187 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 29 156 3.7E-24 T 13-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 HCD_03735 3b1a4585d63761edeec7d43e9ba4ca66 187 Pfam PF03968 OstA-like protein 36 147 1.6E-24 T 13-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal HCD_02305 6289f0fd75809076e2a26ba3ef0affdc 478 Gene3D G3DSA:3.30.70.1450 145 224 6.6E-8 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 HCD_02305 6289f0fd75809076e2a26ba3ef0affdc 478 SUPERFAMILY SSF116726 152 217 4.05E-7 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 HCD_02305 6289f0fd75809076e2a26ba3ef0affdc 478 Pfam PF02080 TrkA-C domain 155 217 4.4E-10 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 HCD_01995 eafe023fe7eae1694ca1bb97478cd680 256 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 55 68 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site HCD_01995 eafe023fe7eae1694ca1bb97478cd680 256 Gene3D G3DSA:3.40.190.10 32 244 6.3E-60 T 13-10-2018 HCD_01995 eafe023fe7eae1694ca1bb97478cd680 256 Gene3D G3DSA:3.40.190.10 116 213 6.3E-60 T 13-10-2018 HCD_01995 eafe023fe7eae1694ca1bb97478cd680 256 SUPERFAMILY SSF53850 1 252 6.32E-52 T 13-10-2018 HCD_01995 eafe023fe7eae1694ca1bb97478cd680 256 SMART SM00062 32 252 5.4E-64 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF HCD_01995 eafe023fe7eae1694ca1bb97478cd680 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 33 251 1.8E-50 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF HCD_00815 3436bda1d553502f6dc80e6c1eada869 546 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 354 534 1.8E-67 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00815 3436bda1d553502f6dc80e6c1eada869 546 PRINTS PR01900 YidC translocation/secretion protein signature 469 484 2.8E-22 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 HCD_00815 3436bda1d553502f6dc80e6c1eada869 546 PRINTS PR01900 YidC translocation/secretion protein signature 340 356 2.8E-22 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 HCD_00815 3436bda1d553502f6dc80e6c1eada869 546 PRINTS PR01900 YidC translocation/secretion protein signature 489 513 2.8E-22 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 HCD_00815 3436bda1d553502f6dc80e6c1eada869 546 PRINTS PR00701 60kDa inner membrane protein signature 7 28 2.7E-35 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 HCD_00815 3436bda1d553502f6dc80e6c1eada869 546 PRINTS PR00701 60kDa inner membrane protein signature 416 439 2.7E-35 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 HCD_00815 3436bda1d553502f6dc80e6c1eada869 546 PRINTS PR00701 60kDa inner membrane protein signature 500 523 2.7E-35 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 HCD_00815 3436bda1d553502f6dc80e6c1eada869 546 PRINTS PR00701 60kDa inner membrane protein signature 325 345 2.7E-35 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 HCD_00815 3436bda1d553502f6dc80e6c1eada869 546 PRINTS PR00701 60kDa inner membrane protein signature 463 485 2.7E-35 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 HCD_00815 3436bda1d553502f6dc80e6c1eada869 546 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 9 536 20.771 T 13-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 HCD_00815 3436bda1d553502f6dc80e6c1eada869 546 Pfam PF14849 YidC periplasmic domain 117 343 5.7E-11 T 13-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain HCD_00815 3436bda1d553502f6dc80e6c1eada869 546 Pfam PF02096 60Kd inner membrane protein 355 534 5.5E-59 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 HCD_00815 3436bda1d553502f6dc80e6c1eada869 546 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 9 353 4.9E-36 T 13-10-2018 IPR028053 Membrane insertase YidC, N-terminal HCD_04110 bb03b641feb4149ab9022a5442ea5850 125 Pfam PF13115 YtkA-like 28 107 7.4E-22 T 13-10-2018 IPR032693 YtkA-like domain HCD_00290 7e89c7f05f32c0b07ce2d276147c8f71 275 SUPERFAMILY SSF51735 5 254 9.91E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_00290 7e89c7f05f32c0b07ce2d276147c8f71 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.1E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_00290 7e89c7f05f32c0b07ce2d276147c8f71 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.1E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_00290 7e89c7f05f32c0b07ce2d276147c8f71 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.1E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_00290 7e89c7f05f32c0b07ce2d276147c8f71 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.1E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR HCD_00290 7e89c7f05f32c0b07ce2d276147c8f71 275 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 251 3.7E-79 T 13-10-2018 HCD_00290 7e89c7f05f32c0b07ce2d276147c8f71 275 Gene3D G3DSA:3.40.50.720 1 275 3.6E-57 T 13-10-2018 HCD_00290 7e89c7f05f32c0b07ce2d276147c8f71 275 PIRSF PIRSF000094 1 259 1.5E-120 T 13-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 HCD_01275 a69bcc49ee6b7ead7b24290c43bb6c04 491 Gene3D G3DSA:1.20.1550.10 3 102 1.7E-7 T 13-10-2018 IPR023380 DsbB-like superfamily HCD_01275 a69bcc49ee6b7ead7b24290c43bb6c04 491 Pfam PF02600 Disulfide bond formation protein DsbB 12 93 2.6E-11 T 13-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 HCD_01275 a69bcc49ee6b7ead7b24290c43bb6c04 491 SUPERFAMILY SSF158442 14 128 2.88E-15 T 13-10-2018 IPR023380 DsbB-like superfamily HCD_01230 752949c3d7bbe653a9b6ae700d43d01c 478 SUPERFAMILY SSF56954 96 473 1.28E-45 T 13-10-2018 HCD_01230 752949c3d7bbe653a9b6ae700d43d01c 478 Gene3D G3DSA:1.20.1600.10 93 476 6.7E-42 T 13-10-2018 HCD_01230 752949c3d7bbe653a9b6ae700d43d01c 478 Pfam PF02321 Outer membrane efflux protein 292 470 1.3E-10 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 HCD_01230 752949c3d7bbe653a9b6ae700d43d01c 478 Pfam PF02321 Outer membrane efflux protein 97 271 4.2E-18 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 HCD_02170 9a3e6536d9b0d20243da8c25a5d9b838 227 Pfam PF01856 Helicobacter outer membrane protein 67 227 6.2E-42 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02170 9a3e6536d9b0d20243da8c25a5d9b838 227 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 104 125 1.2E-21 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02170 9a3e6536d9b0d20243da8c25a5d9b838 227 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 56 77 1.2E-21 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02170 9a3e6536d9b0d20243da8c25a5d9b838 227 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 82 102 1.2E-21 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02170 9a3e6536d9b0d20243da8c25a5d9b838 227 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 187 208 1.2E-21 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04945 02b90c70e44a038357a805eb5c4deb82 271 Pfam PF02470 MlaD protein 38 116 1.8E-14 T 13-10-2018 IPR003399 Mce/MlaD HCD_03090 23c79e37f62e523a67444d6149610535 101 SUPERFAMILY SSF48452 7 53 1.99E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_03090 23c79e37f62e523a67444d6149610535 101 Gene3D G3DSA:1.25.40.10 5 84 1.3E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 HCD_05640 86428b7192838148bfb57ba79f0c03ad 158 SUPERFAMILY SSF55040 11 154 4.84E-56 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_05640 86428b7192838148bfb57ba79f0c03ad 158 Pfam PF01967 MoaC family 14 149 2.0E-50 T 13-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_05640 86428b7192838148bfb57ba79f0c03ad 158 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 1 157 33.888 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_05640 86428b7192838148bfb57ba79f0c03ad 158 Gene3D G3DSA:3.30.70.640 1 158 7.5E-62 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_05640 86428b7192838148bfb57ba79f0c03ad 158 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 3 151 1.5E-54 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 HCD_00620 995e3be7009993bf49a3e651bd04dd33 50 Pfam PF01679 Proteolipid membrane potential modulator 1 40 2.1E-5 T 13-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 HCD_05500 3788972a7fc49d42900d230fd64b30b2 225 Pfam PF13391 HNH endonuclease 123 175 6.3E-7 T 13-10-2018 IPR003615 HNH nuclease HCD_00005 8c93f5373a626f793e8dba8f732b7981 136 SUPERFAMILY SSF48013 3 131 7.19E-34 T 13-10-2018 IPR035926 NusB-like superfamily HCD_00005 8c93f5373a626f793e8dba8f732b7981 136 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 4 131 3.2E-37 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 HCD_00005 8c93f5373a626f793e8dba8f732b7981 136 Pfam PF01029 NusB family 6 129 4.7E-30 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 HCD_00005 8c93f5373a626f793e8dba8f732b7981 136 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 2 133 19.878 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 HCD_00005 8c93f5373a626f793e8dba8f732b7981 136 Gene3D G3DSA:1.10.940.10 1 135 5.8E-37 T 13-10-2018 IPR035926 NusB-like superfamily HCD_00135 72b709838d42800abd2403a0e3444ad8 171 Pfam PF07509 Protein of unknown function (DUF1523) 4 163 3.9E-52 T 13-10-2018 IPR011088 Bacteriophage phiNM3, A0EWY4 HCD_02720 d5b33dcb001f40acc55894c9b6aab813 425 Gene3D G3DSA:3.40.50.300 2 386 3.0E-16 T 13-10-2018 HCD_02720 d5b33dcb001f40acc55894c9b6aab813 425 SUPERFAMILY SSF52540 45 381 1.18E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02720 d5b33dcb001f40acc55894c9b6aab813 425 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 46 366 2.1E-28 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 HCD_05665 dc74d9b77c3130a24366930d37120507 194 SUPERFAMILY SSF142695 3 163 1.31E-48 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 HCD_05665 dc74d9b77c3130a24366930d37120507 194 Pfam PF00925 GTP cyclohydrolase II 9 163 2.1E-55 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 HCD_05665 dc74d9b77c3130a24366930d37120507 194 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 2 194 38.461 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 HCD_05665 dc74d9b77c3130a24366930d37120507 194 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 5 194 1.1E-82 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 HCD_05665 dc74d9b77c3130a24366930d37120507 194 Gene3D G3DSA:3.40.50.10990 1 175 1.8E-71 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 HCD_07825 2b57703b1ad80367ae84c1a808fcc3ce 140 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 100 110 - T 13-10-2018 IPR020549 Endoribonuclease YbeY, conserved site HCD_07825 2b57703b1ad80367ae84c1a808fcc3ce 140 SUPERFAMILY SSF55486 17 133 2.93E-31 T 13-10-2018 HCD_07825 2b57703b1ad80367ae84c1a808fcc3ce 140 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 1 132 19.808 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 HCD_07825 2b57703b1ad80367ae84c1a808fcc3ce 140 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 30 127 4.5E-28 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 HCD_07825 2b57703b1ad80367ae84c1a808fcc3ce 140 Pfam PF02130 Uncharacterized protein family UPF0054 26 125 2.0E-30 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 HCD_07825 2b57703b1ad80367ae84c1a808fcc3ce 140 Gene3D G3DSA:3.40.390.30 5 137 2.1E-34 T 13-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 HCD_04735 bbfe5f3bddd04814e77236cf61eb6152 291 Pfam PF01856 Helicobacter outer membrane protein 62 291 6.5E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04735 bbfe5f3bddd04814e77236cf61eb6152 291 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 50 71 6.9E-15 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04735 bbfe5f3bddd04814e77236cf61eb6152 291 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 74 94 6.9E-15 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04735 bbfe5f3bddd04814e77236cf61eb6152 291 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 250 271 6.9E-15 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06135 17f7f9abc43342a145a86e8b6d213659 294 Gene3D G3DSA:3.40.50.300 27 264 2.5E-48 T 13-10-2018 HCD_06135 17f7f9abc43342a145a86e8b6d213659 294 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 28 263 6.4E-23 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 HCD_06135 17f7f9abc43342a145a86e8b6d213659 294 SUPERFAMILY SSF52540 27 286 1.01E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_06135 17f7f9abc43342a145a86e8b6d213659 294 PIRSF PIRSF003092 1 294 1.1E-64 T 13-10-2018 IPR025501 ATP binding protein MinD HCD_00690 c54e6d58eb7ce5d3e32d322e4f26d8f3 88 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 3 87 7.4E-31 T 13-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 HCD_00690 c54e6d58eb7ce5d3e32d322e4f26d8f3 88 Pfam PF01313 Bacterial export proteins, family 3 5 76 1.3E-29 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 HCD_00690 c54e6d58eb7ce5d3e32d322e4f26d8f3 88 PIRSF PIRSF004669 1 88 8.8E-32 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 HCD_00690 c54e6d58eb7ce5d3e32d322e4f26d8f3 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 17 38 5.0E-24 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 HCD_00690 c54e6d58eb7ce5d3e32d322e4f26d8f3 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 53 75 5.0E-24 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 HCD_00690 c54e6d58eb7ce5d3e32d322e4f26d8f3 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 38 53 5.0E-24 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 HCD_06555 1360553195bf64e28270134eacc9ece1 288 Gene3D G3DSA:1.10.3290.10 16 264 2.2E-35 T 13-10-2018 IPR036597 Fido-like domain superfamily HCD_06555 1360553195bf64e28270134eacc9ece1 288 Pfam PF02661 Fic/DOC family 101 193 9.6E-8 T 13-10-2018 IPR003812 Fido domain HCD_06555 1360553195bf64e28270134eacc9ece1 288 SUPERFAMILY SSF140931 81 253 4.84E-16 T 13-10-2018 IPR036597 Fido-like domain superfamily HCD_02225 a036788baf5151a031f1953c6ff69b30 87 SUPERFAMILY SSF52540 1 74 2.95E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_02225 a036788baf5151a031f1953c6ff69b30 87 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 3 57 2.5E-11 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain HCD_02225 a036788baf5151a031f1953c6ff69b30 87 Gene3D G3DSA:3.40.50.300 1 83 4.1E-15 T 13-10-2018 HCD_07660 3fa37092cee5b48c43f8dba8fd5596ae 452 Pfam PF04335 VirB8 protein 154 337 1.6E-22 T 13-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 HCD_07660 3fa37092cee5b48c43f8dba8fd5596ae 452 Gene3D G3DSA:3.10.450.230 208 341 8.0E-10 T 13-10-2018 HCD_07660 3fa37092cee5b48c43f8dba8fd5596ae 452 SUPERFAMILY SSF54427 206 337 1.71E-21 T 13-10-2018 IPR032710 NTF2-like domain superfamily HCD_05815 c62439d2cd7ac22f040d60848b658f54 257 Pfam PF00899 ThiF family 12 242 1.3E-55 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 HCD_05815 c62439d2cd7ac22f040d60848b658f54 257 SUPERFAMILY SSF69572 6 249 3.01E-78 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 HCD_05815 c62439d2cd7ac22f040d60848b658f54 257 Gene3D G3DSA:3.40.50.720 2 251 3.4E-79 T 13-10-2018 HCD_06900 bfeca91613aed9467c8779b38136448b 685 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 433 668 1.4E-54 T 13-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 HCD_06900 bfeca91613aed9467c8779b38136448b 685 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 19 108 1.0E-8 T 13-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 HCD_00660 e3c3965a57a986ac5c2ac8e1941f42b3 154 Pfam PF13274 Protein of unknown function (DUF4065) 30 126 2.8E-20 T 13-10-2018 IPR025272 Domain of unknown function DUF4065 HCD_00405 29e6c36d2a03c10f0fb13bce68a31c15 133 Gene3D G3DSA:1.20.58.1610 2 128 2.7E-33 T 13-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_00405 29e6c36d2a03c10f0fb13bce68a31c15 133 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 36 127 2.6E-30 T 13-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_01500 05206b91f697d4a7ee8703e2953f368f 202 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 3 201 2.5E-65 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 HCD_01500 05206b91f697d4a7ee8703e2953f368f 202 Gene3D G3DSA:3.40.50.150 2 202 2.8E-42 T 13-10-2018 HCD_01500 05206b91f697d4a7ee8703e2953f368f 202 SUPERFAMILY SSF53335 11 200 8.47E-32 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_01500 05206b91f697d4a7ee8703e2953f368f 202 PIRSF PIRSF004553 9 201 2.8E-50 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 HCD_01500 05206b91f697d4a7ee8703e2953f368f 202 Pfam PF03602 Conserved hypothetical protein 95 10 200 1.3E-53 T 13-10-2018 HCD_01770 6656a144132209445c407d47323456ed 330 Gene3D G3DSA:3.90.25.10 187 315 2.0E-109 T 13-10-2018 HCD_01770 6656a144132209445c407d47323456ed 330 SUPERFAMILY SSF51735 7 320 1.18E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily HCD_01770 6656a144132209445c407d47323456ed 330 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 13 322 9.5E-106 T 13-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 HCD_01770 6656a144132209445c407d47323456ed 330 Gene3D G3DSA:3.40.50.720 13 305 2.0E-109 T 13-10-2018 HCD_01770 6656a144132209445c407d47323456ed 330 Pfam PF01370 NAD dependent epimerase/dehydratase family 13 254 3.3E-41 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 HCD_06330 b52fdb96fcd52c26046495d1c38703d2 124 SMART SM00448 1 116 5.5E-36 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_06330 b52fdb96fcd52c26046495d1c38703d2 124 SUPERFAMILY SSF52172 2 121 1.99E-35 T 13-10-2018 IPR011006 CheY-like superfamily HCD_06330 b52fdb96fcd52c26046495d1c38703d2 124 Gene3D G3DSA:3.40.50.2300 1 124 4.5E-37 T 13-10-2018 HCD_06330 b52fdb96fcd52c26046495d1c38703d2 124 Pfam PF00072 Response regulator receiver domain 4 116 1.7E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 HCD_05885 a0c9cef214820f2f5f9dc7935e145892 2353 Pfam PF03077 Putative vacuolating cytotoxin 639 697 1.8E-19 T 13-10-2018 IPR004311 Vacuolating cytotoxin, putative HCD_05885 a0c9cef214820f2f5f9dc7935e145892 2353 Pfam PF03077 Putative vacuolating cytotoxin 1306 1362 6.9E-23 T 13-10-2018 IPR004311 Vacuolating cytotoxin, putative HCD_05885 a0c9cef214820f2f5f9dc7935e145892 2353 Pfam PF03077 Putative vacuolating cytotoxin 133 193 3.8E-21 T 13-10-2018 IPR004311 Vacuolating cytotoxin, putative HCD_05885 a0c9cef214820f2f5f9dc7935e145892 2353 SUPERFAMILY SSF103515 2072 2353 8.76E-20 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily HCD_05885 a0c9cef214820f2f5f9dc7935e145892 2353 SMART SM00869 2082 2341 7.1E-11 T 13-10-2018 IPR005546 Autotransporter beta-domain HCD_07545 43a4776cf3a3325894c513fceec12d6e 88 Gene3D G3DSA:1.10.3290.10 2 88 3.6E-22 T 13-10-2018 IPR036597 Fido-like domain superfamily HCD_07545 43a4776cf3a3325894c513fceec12d6e 88 SUPERFAMILY SSF140931 3 83 2.22E-20 T 13-10-2018 IPR036597 Fido-like domain superfamily HCD_07545 43a4776cf3a3325894c513fceec12d6e 88 Pfam PF02661 Fic/DOC family 3 31 8.4E-10 T 13-10-2018 IPR003812 Fido domain HCD_05205 f04e4280473f38790dd6251e84e62922 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 47 66 5.5E-64 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 174 194 5.5E-64 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 66 86 5.5E-64 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 86 105 5.5E-64 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 195 216 5.5E-64 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 219 244 5.5E-64 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 174 189 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 Pfam PF00813 FliP family 49 241 4.3E-79 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 49 245 3.9E-84 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 105 117 1.4E-21 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 45 54 1.4E-21 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 167 179 1.4E-21 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 235 245 1.4E-21 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 117 131 1.4E-21 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 HCD_05205 f04e4280473f38790dd6251e84e62922 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 145 157 1.4E-21 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 HCD_08215 3876e86a6b2b95f2be3d3d9b0e557776 42 Pfam PF10040 CRISPR-associated endoribonuclease Cas6 1 36 1.6E-5 T 13-10-2018 IPR019267 CRISPR-associated protein Cas6, C-terminal HCD_07330 f27731f470dc9c8d8650ba8c52af4578 133 Gene3D G3DSA:3.30.420.270 54 129 2.6E-10 T 13-10-2018 HCD_07330 f27731f470dc9c8d8650ba8c52af4578 133 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 132 1.5E-26 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 HCD_03445 c76ea40d04918c7dc7ee979fa7dadc3d 627 Pfam PF01973 Protein of unknown function DUF115 206 377 4.2E-39 T 13-10-2018 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like HCD_04120 7f1f37019ddba8654b677f840222459f 333 Gene3D G3DSA:2.40.420.20 255 333 1.2E-10 T 13-10-2018 HCD_04120 7f1f37019ddba8654b677f840222459f 333 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 47 252 4.9E-41 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain HCD_04120 7f1f37019ddba8654b677f840222459f 333 Gene3D G3DSA:2.40.30.170 181 254 3.9E-16 T 13-10-2018 HCD_04120 7f1f37019ddba8654b677f840222459f 333 Gene3D G3DSA:2.40.50.100 129 180 3.9E-16 T 13-10-2018 HCD_04120 7f1f37019ddba8654b677f840222459f 333 Gene3D G3DSA:1.10.287.470 115 128 3.9E-16 T 13-10-2018 HCD_00835 5a6392e9560d89cdb5e4b042a1758c67 860 Pfam PF01856 Helicobacter outer membrane protein 688 860 3.9E-42 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00835 5a6392e9560d89cdb5e4b042a1758c67 860 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 730 751 5.8E-29 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00835 5a6392e9560d89cdb5e4b042a1758c67 860 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 816 837 5.8E-29 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00835 5a6392e9560d89cdb5e4b042a1758c67 860 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 676 697 5.8E-29 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00835 5a6392e9560d89cdb5e4b042a1758c67 860 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 702 722 5.8E-29 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03845 080c859e9006456c60b8ef0594da2c88 305 SUPERFAMILY SSF51261 58 264 2.41E-37 T 13-10-2018 IPR011055 Duplicated hybrid motif HCD_03845 080c859e9006456c60b8ef0594da2c88 305 Gene3D G3DSA:2.70.70.10 122 266 8.0E-30 T 13-10-2018 IPR011055 Duplicated hybrid motif HCD_03845 080c859e9006456c60b8ef0594da2c88 305 Pfam PF01551 Peptidase family M23 165 256 1.8E-24 T 13-10-2018 IPR016047 Peptidase M23 HCD_05580 395fe43ab1a3a9e6738b97a0a0e88d0b 675 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 556 577 1.1E-6 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05580 395fe43ab1a3a9e6738b97a0a0e88d0b 675 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 513 534 1.1E-6 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05580 395fe43ab1a3a9e6738b97a0a0e88d0b 675 Pfam PF01856 Helicobacter outer membrane protein 525 621 2.8E-8 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05685 6ddd1d992bdd9ff2dd024240bbfa4b81 224 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 10 218 7.3E-62 T 13-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 HCD_05685 6ddd1d992bdd9ff2dd024240bbfa4b81 224 SUPERFAMILY SSF161098 2 212 6.67E-44 T 13-10-2018 IPR035906 MetI-like superfamily HCD_05685 6ddd1d992bdd9ff2dd024240bbfa4b81 224 Gene3D G3DSA:1.10.3720.10 1 222 4.7E-46 T 13-10-2018 IPR035906 MetI-like superfamily HCD_05685 6ddd1d992bdd9ff2dd024240bbfa4b81 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 25 219 1.5E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 HCD_06260 58d186560fdc9b7f934869ae84f1e3d1 362 Pfam PF01145 SPFH domain / Band 7 family 63 262 3.6E-32 T 13-10-2018 IPR001107 Band 7 domain HCD_06260 58d186560fdc9b7f934869ae84f1e3d1 362 Gene3D G3DSA:3.30.479.30 88 244 2.9E-5 T 13-10-2018 HCD_06260 58d186560fdc9b7f934869ae84f1e3d1 362 SMART SM00244 59 242 2.9E-34 T 13-10-2018 IPR001107 Band 7 domain HCD_06260 58d186560fdc9b7f934869ae84f1e3d1 362 PRINTS PR00679 Prohibitin signature 237 260 1.1E-14 T 13-10-2018 IPR000163 Prohibitin GO:0016020 Reactome: R-HSA-8949664 HCD_06260 58d186560fdc9b7f934869ae84f1e3d1 362 PRINTS PR00679 Prohibitin signature 163 181 1.1E-14 T 13-10-2018 IPR000163 Prohibitin GO:0016020 Reactome: R-HSA-8949664 HCD_06260 58d186560fdc9b7f934869ae84f1e3d1 362 PRINTS PR00679 Prohibitin signature 140 159 1.1E-14 T 13-10-2018 IPR000163 Prohibitin GO:0016020 Reactome: R-HSA-8949664 HCD_06260 58d186560fdc9b7f934869ae84f1e3d1 362 PRINTS PR00679 Prohibitin signature 186 202 1.1E-14 T 13-10-2018 IPR000163 Prohibitin GO:0016020 Reactome: R-HSA-8949664 HCD_06260 58d186560fdc9b7f934869ae84f1e3d1 362 PRINTS PR00679 Prohibitin signature 260 276 1.1E-14 T 13-10-2018 IPR000163 Prohibitin GO:0016020 Reactome: R-HSA-8949664 HCD_06260 58d186560fdc9b7f934869ae84f1e3d1 362 SUPERFAMILY SSF117892 91 248 6.41E-14 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily HCD_05050 97b228489277967a8c9d4345960dfa3e 99 TIGRFAM TIGR02683 upstrm_HI1419: putative addiction module killer protein 3 94 2.0E-31 T 13-10-2018 IPR014056 Addiction module killer protein, predicted HCD_05050 97b228489277967a8c9d4345960dfa3e 99 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 11 94 3.3E-8 T 13-10-2018 IPR009241 Toxin HigB-like HCD_05050 97b228489277967a8c9d4345960dfa3e 99 PIRSF PIRSF028744 1 98 2.2E-31 T 13-10-2018 IPR014056 Addiction module killer protein, predicted HCD_03995 deae8377d4336c36ece78f36037b31d9 118 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 8 117 2.4E-42 T 13-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_03995 deae8377d4336c36ece78f36037b31d9 118 Gene3D G3DSA:3.30.420.100 7 117 7.2E-31 T 13-10-2018 HCD_03995 deae8377d4336c36ece78f36037b31d9 118 SUPERFAMILY SSF53137 9 116 2.83E-37 T 13-10-2018 HCD_03995 deae8377d4336c36ece78f36037b31d9 118 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 9 118 8.1E-43 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_03995 deae8377d4336c36ece78f36037b31d9 118 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 8 118 23.594 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 HCD_07500 a21c284780bd3dfb8859708865939fbe 158 Pfam PF00364 Biotin-requiring enzyme 84 155 1.7E-16 T 13-10-2018 IPR000089 Biotin/lipoyl attachment HCD_07500 a21c284780bd3dfb8859708865939fbe 158 Gene3D G3DSA:2.40.50.100 78 156 2.5E-25 T 13-10-2018 HCD_07500 a21c284780bd3dfb8859708865939fbe 158 SUPERFAMILY SSF51230 82 156 9.68E-20 T 13-10-2018 IPR011053 Single hybrid motif HCD_07500 a21c284780bd3dfb8859708865939fbe 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 117 130 9.3E-18 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 HCD_07500 a21c284780bd3dfb8859708865939fbe 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 102 116 9.3E-18 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 HCD_07500 a21c284780bd3dfb8859708865939fbe 158 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 85 98 9.3E-18 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 HCD_07500 a21c284780bd3dfb8859708865939fbe 158 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 157 5.0E-64 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 HCD_03205 f16cfcefe97ed05519c8e91420222b87 72 TIGRFAM TIGR02736 cbb3_Q_epsi: cytochrome c oxidase, cbb3-type, CcoQ subunit 8 62 1.6E-30 T 13-10-2018 IPR014107 Cytochrome c oxidase cbb3-type, CcoQ HCD_03205 f16cfcefe97ed05519c8e91420222b87 72 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 1 50 2.9E-13 T 13-10-2018 IPR008621 Cbb3-type cytochrome oxidase component HCD_00325 2b88ca85ad08627820c9a74be09dc500 741 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 693 714 1.1E-6 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00325 2b88ca85ad08627820c9a74be09dc500 741 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 603 623 1.1E-6 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00325 2b88ca85ad08627820c9a74be09dc500 741 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 579 600 1.1E-6 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03335 e967b0851ecb81bbbb532638829fbe0e 183 Pfam PF04368 Protein of unknown function (DUF507) 1 182 6.4E-69 T 13-10-2018 IPR007463 Protein of unknown function DUF507 HCD_05820 650d4f61d0e0f7a64bcc5d0f495e1793 205 Gene3D G3DSA:3.60.15.10 1 203 1.8E-39 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like HCD_05820 650d4f61d0e0f7a64bcc5d0f495e1793 205 SMART SM00849 12 184 8.4E-30 T 13-10-2018 IPR001279 Metallo-beta-lactamase HCD_05820 650d4f61d0e0f7a64bcc5d0f495e1793 205 Pfam PF00753 Metallo-beta-lactamase superfamily 13 184 1.2E-19 T 13-10-2018 IPR001279 Metallo-beta-lactamase HCD_05820 650d4f61d0e0f7a64bcc5d0f495e1793 205 SUPERFAMILY SSF56281 13 195 5.9E-36 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like HCD_01670 d4967a5af4cb654cea56cfcdd1205ad3 54 Pfam PF00872 Transposase, Mutator family 16 52 4.5E-6 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 HCD_05835 c392d378cffc98f58f923bd4ecaccb96 528 Pfam PF02521 Putative outer membrane protein 18 528 4.7E-152 T 13-10-2018 IPR003678 Putative outer membrane protein HCD_08545 69b84fa6f73d863d6c4bfed4df80eccd 163 Gene3D G3DSA:3.40.1440.50 1 163 7.0E-84 T 13-10-2018 HCD_06590 b8d53fdf2d10e98ed5987202567f7238 370 Pfam PF01924 Hydrogenase formation hypA family 17 368 1.7E-149 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 HCD_06590 b8d53fdf2d10e98ed5987202567f7238 370 Gene3D G3DSA:3.40.50.11750 20 262 8.6E-105 T 13-10-2018 HCD_06590 b8d53fdf2d10e98ed5987202567f7238 370 PIRSF PIRSF005622 4 370 3.9E-161 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 HCD_06590 b8d53fdf2d10e98ed5987202567f7238 370 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 1 369 1.6E-173 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 HCD_06590 b8d53fdf2d10e98ed5987202567f7238 370 Gene3D G3DSA:1.10.10.2140 319 369 8.7E-26 T 13-10-2018 HCD_06590 b8d53fdf2d10e98ed5987202567f7238 370 Gene3D G3DSA:3.40.50.11740 65 303 8.6E-105 T 13-10-2018 HCD_01560 55639840bcfe2a453f01e115287065df 84 ProDom PD061650 JHP0447 HP0495 CJ0253 8 73 3.0E-26 T 13-10-2018 HCD_01560 55639840bcfe2a453f01e115287065df 84 SUPERFAMILY SSF117991 4 84 3.66E-18 T 13-10-2018 IPR027471 YbeD-like domain superfamily HCD_01560 55639840bcfe2a453f01e115287065df 84 Pfam PF04359 Protein of unknown function (DUF493) 6 84 4.6E-11 T 13-10-2018 IPR007454 Uncharacterised protein family UPF0250 HCD_01560 55639840bcfe2a453f01e115287065df 84 Gene3D G3DSA:3.30.70.260 12 84 4.6E-29 T 13-10-2018 HCD_04850 a29c6e840a13462ae128536652f856b0 115 PIRSF PIRSF003203 1 107 2.0E-37 T 13-10-2018 IPR008407 Branched-chain amino acid transport, AzlD HCD_04850 a29c6e840a13462ae128536652f856b0 115 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 7 102 2.1E-17 T 13-10-2018 IPR008407 Branched-chain amino acid transport, AzlD HCD_00050 6c4198dafa213c3a6ba378aafe942c3a 656 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 518 539 6.1E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00050 6c4198dafa213c3a6ba378aafe942c3a 656 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 497 517 6.1E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00050 6c4198dafa213c3a6ba378aafe942c3a 656 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 616 637 6.1E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00050 6c4198dafa213c3a6ba378aafe942c3a 656 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 471 492 6.1E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00050 6c4198dafa213c3a6ba378aafe942c3a 656 Pfam PF01856 Helicobacter outer membrane protein 482 656 1.1E-50 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06675 6d26a0accb40328b904160fe0ad09e0c 173 Pfam PF03061 Thioesterase superfamily 39 110 8.1E-13 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 HCD_06675 6d26a0accb40328b904160fe0ad09e0c 173 Gene3D G3DSA:3.10.129.10 15 165 1.4E-48 T 13-10-2018 HCD_06675 6d26a0accb40328b904160fe0ad09e0c 173 SUPERFAMILY SSF54637 16 162 1.78E-39 T 13-10-2018 IPR029069 HotDog domain superfamily HCD_03875 7a7a4cd3e85936ff683faa308f6fe373 526 PRINTS PR00702 Acriflavin resistance protein family signature 479 502 9.9E-7 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_03875 7a7a4cd3e85936ff683faa308f6fe373 526 PRINTS PR00702 Acriflavin resistance protein family signature 404 428 9.9E-7 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_03875 7a7a4cd3e85936ff683faa308f6fe373 526 PRINTS PR00702 Acriflavin resistance protein family signature 351 374 9.9E-7 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 HCD_03875 7a7a4cd3e85936ff683faa308f6fe373 526 Gene3D G3DSA:3.30.70.3400 134 339 1.1E-56 T 13-10-2018 HCD_03875 7a7a4cd3e85936ff683faa308f6fe373 526 SUPERFAMILY SSF82866 247 507 6.8E-37 T 13-10-2018 HCD_03875 7a7a4cd3e85936ff683faa308f6fe373 526 Gene3D G3DSA:1.20.1640.10 349 498 2.1E-9 T 13-10-2018 HCD_03875 7a7a4cd3e85936ff683faa308f6fe373 526 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 265 495 1.0E-83 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial HCD_03875 7a7a4cd3e85936ff683faa308f6fe373 526 Pfam PF02355 Protein export membrane protein 334 501 5.6E-16 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial HCD_03875 7a7a4cd3e85936ff683faa308f6fe373 526 Gene3D G3DSA:3.30.1360.200 194 333 1.1E-56 T 13-10-2018 HCD_03875 7a7a4cd3e85936ff683faa308f6fe373 526 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 515 40.118 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 HCD_03875 7a7a4cd3e85936ff683faa308f6fe373 526 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 36 501 3.4E-145 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 HCD_05700 10271ecd5a8fe390ff14eeb4bed2bf79 207 Gene3D G3DSA:3.30.2010.10 94 199 2.5E-15 T 13-10-2018 HCD_05700 10271ecd5a8fe390ff14eeb4bed2bf79 207 Pfam PF01863 Protein of unknown function DUF45 92 193 1.9E-29 T 13-10-2018 IPR002725 Protein of unknown function DUF45 HCD_04980 220e2452064bc2e82a987db7e42481d3 1549 Pfam PF12033 Protein of unknown function (DUF3519) 797 885 7.0E-14 T 13-10-2018 IPR021907 Protein of unknown function DUF3519 HCD_04980 220e2452064bc2e82a987db7e42481d3 1549 Pfam PF12033 Protein of unknown function (DUF3519) 337 436 9.8E-8 T 13-10-2018 IPR021907 Protein of unknown function DUF3519 HCD_00685 ce1912e6a3a9b56d1093bec54c919f43 259 Gene3D G3DSA:3.90.78.10 178 259 1.4E-25 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_00685 ce1912e6a3a9b56d1093bec54c919f43 259 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 170 257 6.3E-21 T 13-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_00685 ce1912e6a3a9b56d1093bec54c919f43 259 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 7 259 5.4E-81 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_00685 ce1912e6a3a9b56d1093bec54c919f43 259 SUPERFAMILY SSF56176 13 170 4.25E-16 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 HCD_00685 ce1912e6a3a9b56d1093bec54c919f43 259 Gene3D G3DSA:3.30.465.10 64 177 3.1E-19 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 HCD_00685 ce1912e6a3a9b56d1093bec54c919f43 259 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 259 45.541 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_00685 ce1912e6a3a9b56d1093bec54c919f43 259 SUPERFAMILY SSF56194 162 258 4.71E-27 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 HCD_01320 fa49e4352b4911361b80b4433f201313 976 Pfam PF13116 Protein of unknown function 212 463 7.0E-21 T 13-10-2018 IPR025263 Domain of unknown function DUF3971 HCD_01320 fa49e4352b4911361b80b4433f201313 976 Pfam PF13109 AsmA-like C-terminal region 744 957 4.9E-81 T 13-10-2018 IPR039441 AsmA-like C-terminal region HCD_00285 134931760239eef511ac77bd30b74345 336 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 3 320 33.618 T 13-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 HCD_00285 134931760239eef511ac77bd30b74345 336 Gene3D G3DSA:3.40.1390.10 1 93 5.2E-23 T 13-10-2018 HCD_00285 134931760239eef511ac77bd30b74345 336 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 217 250 6.0E-6 T 13-10-2018 IPR001451 Hexapeptide repeat HCD_00285 134931760239eef511ac77bd30b74345 336 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 138 173 3.2E-8 T 13-10-2018 IPR001451 Hexapeptide repeat HCD_00285 134931760239eef511ac77bd30b74345 336 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 107 136 1.0E-7 T 13-10-2018 IPR001451 Hexapeptide repeat HCD_00285 134931760239eef511ac77bd30b74345 336 SUPERFAMILY SSF51161 29 308 3.72E-68 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily HCD_00285 134931760239eef511ac77bd30b74345 336 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 19 87 1.7E-21 T 13-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 HCD_00285 134931760239eef511ac77bd30b74345 336 Gene3D G3DSA:2.160.10.10 104 303 4.4E-57 T 13-10-2018 HCD_00285 134931760239eef511ac77bd30b74345 336 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 5 323 5.2E-129 T 13-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 HCD_01105 3c523ef218b07841d8d123bb97a47b01 442 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 6 367 2.2E-140 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 HCD_01105 3c523ef218b07841d8d123bb97a47b01 442 PIRSF PIRSF004539 1 442 1.5E-174 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 HCD_01105 3c523ef218b07841d8d123bb97a47b01 442 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 6 442 8.5E-211 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 HCD_03825 0ede5769a6bd8352d63170f4c8959a6c 167 SUPERFAMILY SSF50022 27 153 2.04E-27 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 HCD_03825 0ede5769a6bd8352d63170f4c8959a6c 167 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 6 42 3.3E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal HCD_03825 0ede5769a6bd8352d63170f4c8959a6c 167 Gene3D G3DSA:2.102.10.10 38 154 2.0E-29 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 HCD_03825 0ede5769a6bd8352d63170f4c8959a6c 167 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 5 154 2.8E-47 T 13-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 HCD_03825 0ede5769a6bd8352d63170f4c8959a6c 167 Pfam PF00355 Rieske [2Fe-2S] domain 49 141 3.0E-12 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 HCD_00990 5c28bc588df905194ee64333a3bb2876 107 Pfam PF05106 Phage holin family (Lysis protein S) 52 106 9.1E-8 T 13-10-2018 IPR006481 Bacteriophage lambda, GpS, holin HCD_07710 c010333c2bed2f5693aafdab9902de1d 97 SUPERFAMILY SSF46626 19 95 9.0E-11 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_07710 c010333c2bed2f5693aafdab9902de1d 97 Gene3D G3DSA:1.10.760.10 20 94 7.9E-15 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_07710 c010333c2bed2f5693aafdab9902de1d 97 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 20 92 2.8E-7 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 HCD_03635 bca9176a9672bf8f4f79f2483462c734 496 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 9 487 1.4E-209 T 13-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 HCD_03635 bca9176a9672bf8f4f79f2483462c734 496 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 38 436 5.2E-98 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 HCD_03635 bca9176a9672bf8f4f79f2483462c734 496 Gene3D G3DSA:1.20.1730.10 26 494 1.4E-91 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily HCD_03635 bca9176a9672bf8f4f79f2483462c734 496 Pfam PF00474 Sodium:solute symporter family 38 436 5.9E-100 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 HCD_07725 38beaecae95518c483923551394e311c 180 Gene3D G3DSA:3.40.50.11670 1 180 3.4E-64 T 13-10-2018 IPR038381 DNA replication regulator HobA superfamily HCD_07725 38beaecae95518c483923551394e311c 180 Pfam PF12163 DNA replication regulator 1 180 2.3E-52 T 13-10-2018 IPR021011 DNA replication regulator, HobA HCD_01030 2fb2278f468abdd9117f24b348c04b6d 72 Pfam PF01856 Helicobacter outer membrane protein 1 69 4.6E-13 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02140 91167de0cbfc9565cd81a07dcd71ef90 260 SUPERFAMILY SSF52402 4 254 1.0E-62 T 13-10-2018 HCD_02140 91167de0cbfc9565cd81a07dcd71ef90 260 TIGRFAM TIGR00552 nadE: NAD+ synthetase 6 258 3.2E-86 T 13-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 HCD_02140 91167de0cbfc9565cd81a07dcd71ef90 260 Gene3D G3DSA:3.40.50.620 1 248 1.9E-78 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold HCD_02140 91167de0cbfc9565cd81a07dcd71ef90 260 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 4 254 44.37 T 13-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 HCD_02140 91167de0cbfc9565cd81a07dcd71ef90 260 Pfam PF02540 NAD synthase 9 251 6.9E-89 T 13-10-2018 IPR022310 NAD/GMP synthase HCD_02485 f47bc0a526194ef1e5e85c5b0a3aa668 126 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 2 63 1.1E-7 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_02485 f47bc0a526194ef1e5e85c5b0a3aa668 126 Pfam PF07282 Putative transposase DNA-binding domain 36 104 1.3E-22 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_01735 f47bc0a526194ef1e5e85c5b0a3aa668 126 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 2 63 1.1E-7 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_01735 f47bc0a526194ef1e5e85c5b0a3aa668 126 Pfam PF07282 Putative transposase DNA-binding domain 36 104 1.3E-22 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal HCD_00750 f41e7eb285ae4c010ca1630f462a9168 789 Pfam PF01856 Helicobacter outer membrane protein 636 763 3.0E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00840 879eb4c83dd972fe3d771acd52065484 641 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 593 614 1.5E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00840 879eb4c83dd972fe3d771acd52065484 641 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 477 498 1.5E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00840 879eb4c83dd972fe3d771acd52065484 641 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 501 521 1.5E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03805 4e261547c95ae1e00776e4063043be7a 234 Gene3D G3DSA:3.40.1360.10 1 101 1.4E-6 T 13-10-2018 HCD_03530 4bb5e4e67405614025638d8fbc674e4f 62 Pfam PF17402 Family of unknown function (DUF5408) 3 56 1.2E-15 T 13-10-2018 IPR035366 Protein of unknown function DUF5408 HCD_00525 69d23d949a36f2842f843468792e0557 366 Pfam PF17278 Family of unknown function (DUF5343) 197 292 2.3E-6 T 13-10-2018 IPR035235 Protein of unknown function DUF5343 HCD_04070 8b8c75f1741b8edb2b7c6192302e111a 215 Gene3D G3DSA:3.40.1370.10 5 215 2.5E-53 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 HCD_04070 8b8c75f1741b8edb2b7c6192302e111a 215 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 9 213 26.134 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_04070 8b8c75f1741b8edb2b7c6192302e111a 215 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 25 208 1.0E-53 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_04070 8b8c75f1741b8edb2b7c6192302e111a 215 Pfam PF00573 Ribosomal protein L4/L1 family 25 208 2.6E-49 T 13-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 HCD_04070 8b8c75f1741b8edb2b7c6192302e111a 215 SUPERFAMILY SSF52166 1 209 7.19E-53 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 HCD_07180 8a2bd54e7b56e4473ab5ec61f1386042 334 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 332 1.9E-44 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 HCD_07180 8a2bd54e7b56e4473ab5ec61f1386042 334 SUPERFAMILY SSF161098 90 315 6.67E-19 T 13-10-2018 IPR035906 MetI-like superfamily HCD_05930 2b9011dde7ada4bfd261ccf69308f17d 200 Gene3D G3DSA:3.30.479.10 1 145 5.9E-22 T 13-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 HCD_05930 2b9011dde7ada4bfd261ccf69308f17d 200 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 3 143 2.8E-21 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 HCD_05930 2b9011dde7ada4bfd261ccf69308f17d 200 SUPERFAMILY SSF55620 1 145 8.34E-25 T 13-10-2018 HCD_04670 4b183be5b947867145d5c1ea4928afd9 249 Pfam PF01856 Helicobacter outer membrane protein 59 249 5.3E-49 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04670 4b183be5b947867145d5c1ea4928afd9 249 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 124 145 1.3E-30 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04670 4b183be5b947867145d5c1ea4928afd9 249 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 204 225 1.3E-30 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04670 4b183be5b947867145d5c1ea4928afd9 249 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 74 94 1.3E-30 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04670 4b183be5b947867145d5c1ea4928afd9 249 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 48 69 1.3E-30 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07420 245d6641e708b0755254995e8612f47e 454 Pfam PF02521 Putative outer membrane protein 12 454 8.2E-145 T 13-10-2018 IPR003678 Putative outer membrane protein HCD_02145 321c5b3d27f61e5d85bfe6be2e7085e2 312 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 7 302 21.353 T 13-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 HCD_02145 321c5b3d27f61e5d85bfe6be2e7085e2 312 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 24 298 9.1E-40 T 13-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 HCD_03855 2bcac15ffe0908f8bf604d43510b42fd 169 Pfam PF04390 Lipopolysaccharide-assembly 36 156 5.5E-12 T 13-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 HCD_00670 383ab0640e5de02f06d74454657f1a36 382 SUPERFAMILY SSF53448 22 309 7.59E-39 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_00670 383ab0640e5de02f06d74454657f1a36 382 Pfam PF01501 Glycosyl transferase family 8 23 307 7.7E-55 T 13-10-2018 IPR002495 Glycosyl transferase, family 8 GO:0016757 HCD_00670 383ab0640e5de02f06d74454657f1a36 382 Gene3D G3DSA:3.90.550.10 63 320 3.7E-33 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases HCD_05140 097af6ddd5e6aba5b24a9d689f85215d 141 Gene3D G3DSA:1.10.3830.10 20 138 1.4E-33 T 13-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 HCD_05140 097af6ddd5e6aba5b24a9d689f85215d 141 Pfam PF01219 Prokaryotic diacylglycerol kinase 34 131 4.3E-29 T 13-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 HCD_00495 48a8796f5a916f5b9d80d558df55c9c7 203 Pfam PF04263 Thiamin pyrophosphokinase, catalytic domain 20 115 8.1E-17 T 13-10-2018 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 HCD_00495 48a8796f5a916f5b9d80d558df55c9c7 203 TIGRFAM TIGR01378 thi_PPkinase: thiamine pyrophosphokinase 4 198 1.6E-45 T 13-10-2018 IPR006282 Thiamin pyrophosphokinase GO:0004788|GO:0006772 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 HCD_00495 48a8796f5a916f5b9d80d558df55c9c7 203 Gene3D G3DSA:3.40.50.10240 1 203 7.0E-51 T 13-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 HCD_00495 48a8796f5a916f5b9d80d558df55c9c7 203 SUPERFAMILY SSF63999 1 122 8.11E-31 T 13-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 HCD_04375 6a12668bf236d9f705962d4e4793eb69 365 Pfam PF12698 ABC-2 family transporter protein 14 351 4.2E-29 T 13-10-2018 HCD_03305 7a13e3053cd461333dc13738158fc24b 76 Pfam PF04325 Protein of unknown function (DUF465) 19 63 1.4E-12 T 13-10-2018 IPR007420 Protein of unknown function DUF465 HCD_03305 7a13e3053cd461333dc13738158fc24b 76 Gene3D G3DSA:1.20.58.660 1 76 1.0E-30 T 13-10-2018 HCD_08620 65a6ab3af3cb221231104706fb805897 100 Gene3D G3DSA:3.40.50.150 1 99 1.3E-5 T 13-10-2018 HCD_04915 475f33a86d17ae93471fb3426543b9a9 63 Gene3D G3DSA:2.40.10.120 1 62 1.5E-8 T 13-10-2018 HCD_08535 72794015f7da63c356b81875de0a973e 435 Pfam PF00860 Permease family 17 395 3.9E-34 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 HCD_06680 56051958c2ed5f3d91b8efeff15410e2 847 Gene3D G3DSA:2.170.130.10 58 182 1.5E-25 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily HCD_06680 56051958c2ed5f3d91b8efeff15410e2 847 Pfam PF00593 TonB dependent receptor 463 845 1.1E-21 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel HCD_06680 56051958c2ed5f3d91b8efeff15410e2 847 SUPERFAMILY SSF56935 58 847 2.2E-87 T 13-10-2018 HCD_06680 56051958c2ed5f3d91b8efeff15410e2 847 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 173 8.6E-21 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain HCD_02270 8729e6b44a9efaf7310ecc34acbb440e 2925 Pfam PF03077 Putative vacuolating cytotoxin 1177 1233 1.3E-21 T 13-10-2018 IPR004311 Vacuolating cytotoxin, putative HCD_02270 8729e6b44a9efaf7310ecc34acbb440e 2925 Pfam PF03077 Putative vacuolating cytotoxin 1808 1865 8.0E-22 T 13-10-2018 IPR004311 Vacuolating cytotoxin, putative HCD_02270 8729e6b44a9efaf7310ecc34acbb440e 2925 Pfam PF03077 Putative vacuolating cytotoxin 705 764 2.2E-18 T 13-10-2018 IPR004311 Vacuolating cytotoxin, putative HCD_02270 8729e6b44a9efaf7310ecc34acbb440e 2925 SMART SM00869 2654 2913 1.5E-10 T 13-10-2018 IPR005546 Autotransporter beta-domain HCD_02270 8729e6b44a9efaf7310ecc34acbb440e 2925 SUPERFAMILY SSF103515 2639 2922 2.88E-18 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily HCD_07535 116badffb3b2e7bf65b06b5182939e37 936 Pfam PF01578 Cytochrome C assembly protein 695 896 5.4E-42 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 HCD_07535 116badffb3b2e7bf65b06b5182939e37 936 Pfam PF05140 ResB-like family 212 292 5.6E-12 T 13-10-2018 IPR007816 ResB-like domain HCD_03140 4de6c44631660f5a1ef11a684a7cb11b 318 Gene3D G3DSA:3.30.450.20 38 151 2.5E-11 T 13-10-2018 HCD_03140 4de6c44631660f5a1ef11a684a7cb11b 318 SUPERFAMILY SSF103190 95 153 1.65E-9 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily HCD_02275 d1905f3db41ac590d11b75a2a38d62f5 157 Pfam PF13664 Domain of unknown function (DUF4149) 11 115 7.5E-12 T 13-10-2018 IPR025423 Domain of unknown function DUF4149 HCD_02900 b3fe6522c1ae74a5d074bca0e9f0da49 59 Gene3D G3DSA:1.20.5.1030 5 58 5.1E-9 T 13-10-2018 IPR038379 SecE superfamily HCD_02900 b3fe6522c1ae74a5d074bca0e9f0da49 59 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 11 56 8.4E-9 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 HCD_02900 b3fe6522c1ae74a5d074bca0e9f0da49 59 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 10 58 5.1E-10 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 HCD_04950 6b299f043329bc1505b965d0e78e10a5 216 SUPERFAMILY SSF159594 35 162 3.4E-9 T 13-10-2018 HCD_01365 c1c90658eb36b57089033d484bdbba38 677 SUPERFAMILY SSF53649 297 638 1.78E-24 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 HCD_01365 c1c90658eb36b57089033d484bdbba38 677 Gene3D G3DSA:3.40.720.10 286 589 7.3E-33 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 HCD_01365 c1c90658eb36b57089033d484bdbba38 677 Pfam PF00884 Sulfatase 297 585 6.1E-37 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 HCD_03010 5f5c172be14d702d1e92d5fe3b20b3a8 180 Pfam PF08966 Domain of unknown function (DUF1882) 1 73 5.8E-34 T 13-10-2018 IPR015061 Domain of unknown function DUF1882 HCD_03010 5f5c172be14d702d1e92d5fe3b20b3a8 180 SUPERFAMILY SSF56747 3 178 1.57E-86 T 13-10-2018 HCD_03010 5f5c172be14d702d1e92d5fe3b20b3a8 180 Gene3D G3DSA:3.90.920.20 1 180 3.9E-84 T 13-10-2018 HCD_00630 5aa0026d060ba70201159a6dd35ca276 476 Pfam PF14281 PD-(D/E)XK nuclease superfamily 29 223 3.4E-30 T 13-10-2018 IPR029470 PD-(D/E)XK nuclease superfamily 4 HCD_08749 687ead8b36e0de46ff9dba76de6a4d19 673 Pfam PF03432 Relaxase/Mobilisation nuclease domain 51 237 1.9E-15 T 13-10-2018 IPR005094 Endonuclease relaxase, MobA/VirD2 HCD_04235 a773b519bb198a633fa53e41c8f2a2d1 289 SUPERFAMILY SSF52980 61 122 8.85E-6 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 HCD_00320 03ac73c35c370520bbf4b2856456b5a6 487 Pfam PF01856 Helicobacter outer membrane protein 344 487 1.6E-20 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00320 03ac73c35c370520bbf4b2856456b5a6 487 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 443 464 1.2E-8 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00320 03ac73c35c370520bbf4b2856456b5a6 487 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 372 393 1.2E-8 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00320 03ac73c35c370520bbf4b2856456b5a6 487 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 332 353 1.2E-8 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05845 2bd672a667c325bfaca2aa2af03ddd52 514 Pfam PF02521 Putative outer membrane protein 14 514 1.6E-159 T 13-10-2018 IPR003678 Putative outer membrane protein HCD_03880 29f3f111e94d8aa9395094319fa8fd32 96 PRINTS PR01853 Bacterial YajC preprotein translocase signature 28 46 4.0E-15 T 13-10-2018 IPR003849 Preprotein translocase YajC HCD_03880 29f3f111e94d8aa9395094319fa8fd32 96 PRINTS PR01853 Bacterial YajC preprotein translocase signature 8 28 4.0E-15 T 13-10-2018 IPR003849 Preprotein translocase YajC HCD_03880 29f3f111e94d8aa9395094319fa8fd32 96 Pfam PF02699 Preprotein translocase subunit 10 85 8.5E-25 T 13-10-2018 IPR003849 Preprotein translocase YajC HCD_03880 29f3f111e94d8aa9395094319fa8fd32 96 SMART SM01323 6 88 8.7E-33 T 13-10-2018 IPR003849 Preprotein translocase YajC HCD_03880 29f3f111e94d8aa9395094319fa8fd32 96 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 7 87 1.8E-30 T 13-10-2018 IPR003849 Preprotein translocase YajC HCD_06595 7a32a926a3302123fbfe533681205c65 78 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 39 55 1.6E-12 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC HCD_06595 7a32a926a3302123fbfe533681205c65 78 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 57 69 1.6E-12 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC HCD_06595 7a32a926a3302123fbfe533681205c65 78 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 1.6E-12 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC HCD_06595 7a32a926a3302123fbfe533681205c65 78 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 17 33 1.6E-12 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC HCD_06595 7a32a926a3302123fbfe533681205c65 78 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 76 4.7E-27 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC HCD_06595 7a32a926a3302123fbfe533681205c65 78 SUPERFAMILY SSF159127 1 75 5.36E-25 T 13-10-2018 IPR037254 HupF/HypC superfamily HCD_06595 7a32a926a3302123fbfe533681205c65 78 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 13-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site HCD_06595 7a32a926a3302123fbfe533681205c65 78 Pfam PF01455 HupF/HypC family 1 65 8.1E-24 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC HCD_06595 7a32a926a3302123fbfe533681205c65 78 Gene3D G3DSA:2.40.50.970 1 78 9.0E-28 T 13-10-2018 IPR037254 HupF/HypC superfamily HCD_02165 c86bdd819af7f25bfae47f7492b94072 234 Pfam PF02107 Flagellar L-ring protein 46 233 2.8E-47 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 HCD_02165 c86bdd819af7f25bfae47f7492b94072 234 PRINTS PR01008 Flagellar L-ring protein signature 174 190 4.7E-12 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 HCD_02165 c86bdd819af7f25bfae47f7492b94072 234 PRINTS PR01008 Flagellar L-ring protein signature 65 77 4.7E-12 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 HCD_02165 c86bdd819af7f25bfae47f7492b94072 234 PRINTS PR01008 Flagellar L-ring protein signature 148 163 4.7E-12 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 HCD_02165 c86bdd819af7f25bfae47f7492b94072 234 PRINTS PR01008 Flagellar L-ring protein signature 195 209 4.7E-12 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 HCD_02165 c86bdd819af7f25bfae47f7492b94072 234 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 232 24.83 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 HCD_05575 e99fd428f041abb0f8d6da64774073a9 609 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 483 503 7.6E-6 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05575 e99fd428f041abb0f8d6da64774073a9 609 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 459 480 7.6E-6 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_06870 20021bd88adbba88ce4247a56a378367 438 PIRSF PIRSF006603 4 437 7.8E-81 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 HCD_06870 20021bd88adbba88ce4247a56a378367 438 Pfam PF01554 MatE 13 168 2.0E-16 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 HCD_06870 20021bd88adbba88ce4247a56a378367 438 Pfam PF01554 MatE 235 395 2.3E-35 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 HCD_06870 20021bd88adbba88ce4247a56a378367 438 TIGRFAM TIGR00797 matE: MATE efflux family protein 21 401 3.1E-107 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 HCD_07095 63ff0177e9a3898932abd47c0accf991 173 Pfam PF16357 Putative PepSY_TM-like 3 169 2.6E-6 T 13-10-2018 IPR032307 Putative PepSY TM-like protein HCD_04210 dd658bff6b1cbcfe009c01b9c1d163d8 266 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 40 265 2.5E-79 T 13-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 HCD_04210 dd658bff6b1cbcfe009c01b9c1d163d8 266 Pfam PF02666 Phosphatidylserine decarboxylase 51 262 8.3E-53 T 13-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 HCD_02150 612ade4cd9aad3a9d65e4c56ff2ec842 122 TIGRFAM TIGR03585 PseH: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 2 108 2.4E-36 T 13-10-2018 IPR020036 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase HCD_02150 612ade4cd9aad3a9d65e4c56ff2ec842 122 Pfam PF00583 Acetyltransferase (GNAT) family 3 83 7.3E-7 T 13-10-2018 IPR000182 GNAT domain HCD_02150 612ade4cd9aad3a9d65e4c56ff2ec842 122 SUPERFAMILY SSF55729 2 109 5.32E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase HCD_02150 612ade4cd9aad3a9d65e4c56ff2ec842 122 Gene3D G3DSA:3.40.630.30 1 121 1.1E-32 T 13-10-2018 HCD_07995 35fbd7ff19e50a0e9065be3cbcc6ed40 221 Pfam PF01856 Helicobacter outer membrane protein 74 221 4.0E-26 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07800 bba58d34da26a4bfccb49696d2b9b060 634 Pfam PF01856 Helicobacter outer membrane protein 460 634 1.1E-50 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07800 bba58d34da26a4bfccb49696d2b9b060 634 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 475 495 5.4E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07800 bba58d34da26a4bfccb49696d2b9b060 634 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 594 615 5.4E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07800 bba58d34da26a4bfccb49696d2b9b060 634 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 496 517 5.4E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07800 bba58d34da26a4bfccb49696d2b9b060 634 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 449 470 5.4E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00265 98cd914f6a484e9e2e2bbfd8ae5eb78d 49 Pfam PF01783 Ribosomal L32p protein family 2 44 6.6E-8 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00265 98cd914f6a484e9e2e2bbfd8ae5eb78d 49 SUPERFAMILY SSF57829 2 48 1.59E-8 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 HCD_00265 98cd914f6a484e9e2e2bbfd8ae5eb78d 49 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 49 11.896 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_00265 98cd914f6a484e9e2e2bbfd8ae5eb78d 49 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 48 7.1E-13 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 HCD_05755 f0811099412364f686da41e750d1d05f 114 SUPERFAMILY SSF52980 14 109 3.11E-25 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 HCD_05755 f0811099412364f686da41e750d1d05f 114 Hamap MF_00048 UPF0102 protein YraN [yraN]. 8 114 18.286 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 HCD_05755 f0811099412364f686da41e750d1d05f 114 Gene3D G3DSA:3.40.1350.10 14 113 4.6E-22 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 HCD_05755 f0811099412364f686da41e750d1d05f 114 Pfam PF02021 Uncharacterised protein family UPF0102 15 99 2.8E-19 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 HCD_06880 2dcecdda2617cf124627a92f89e2763c 293 Pfam PF00795 Carbon-nitrogen hydrolase 7 271 2.8E-57 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 HCD_06880 2dcecdda2617cf124627a92f89e2763c 293 Gene3D G3DSA:3.60.110.10 5 293 8.7E-84 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily HCD_06880 2dcecdda2617cf124627a92f89e2763c 293 SUPERFAMILY SSF56317 5 290 3.79E-73 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily HCD_03260 9e2888328da272590b0db963b9e4d669 116 Gene3D G3DSA:3.40.30.10 4 116 4.0E-34 T 13-10-2018 HCD_03260 9e2888328da272590b0db963b9e4d669 116 SUPERFAMILY SSF52833 3 108 1.8E-35 T 13-10-2018 IPR036249 Thioredoxin-like superfamily HCD_03260 9e2888328da272590b0db963b9e4d669 116 Pfam PF00578 AhpC/TSA family 7 109 1.3E-31 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 HCD_05950 5014cd5c335d03a2d0aaa98269213658 287 SUPERFAMILY SSF53756 7 263 8.79E-15 T 13-10-2018 HCD_04250 bdc7e6f4babd4226ed8cf4e8fd6fa454 376 Gene3D G3DSA:2.30.30.40 324 376 4.3E-7 T 13-10-2018 HCD_02955 15681e6ada5085b1e996ed4b844fee9f 753 Pfam PF04453 Organic solvent tolerance protein 284 647 6.0E-40 T 13-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 HCD_02955 15681e6ada5085b1e996ed4b844fee9f 753 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 2 742 14.035 T 13-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 HCD_03405 778cb99ecb19e9522460ea3030ae8089 242 Pfam PF01856 Helicobacter outer membrane protein 98 242 4.7E-10 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00485 7d5cdbc5394d615f21fbcdfb47cf0825 148 Pfam PF13274 Protein of unknown function (DUF4065) 26 111 4.9E-16 T 13-10-2018 IPR025272 Domain of unknown function DUF4065 HCD_02615 339b66125248f92af1f0d2e647376199 178 SUPERFAMILY SSF46626 100 168 7.75E-7 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 HCD_01185 f701090c5848dfd25b075f431ede2560 97 Pfam PF00374 Nickel-dependent hydrogenase 1 76 1.1E-44 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 HCD_01185 f701090c5848dfd25b075f431ede2560 97 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 67 76 - T 13-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 HCD_01185 f701090c5848dfd25b075f431ede2560 97 Gene3D G3DSA:1.10.645.10 1 91 7.4E-46 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_01185 f701090c5848dfd25b075f431ede2560 97 SUPERFAMILY SSF56762 2 76 1.7E-33 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 HCD_05250 fd950a2d9f2ddc8d97ed71e5e9774eec 268 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 106 126 1.5E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05250 fd950a2d9f2ddc8d97ed71e5e9774eec 268 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 148 169 1.5E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05250 fd950a2d9f2ddc8d97ed71e5e9774eec 268 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 228 249 1.5E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05250 fd950a2d9f2ddc8d97ed71e5e9774eec 268 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 80 101 1.5E-32 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05250 fd950a2d9f2ddc8d97ed71e5e9774eec 268 Pfam PF01856 Helicobacter outer membrane protein 91 268 1.5E-53 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04895 7f57235ca076b5597b49df65d2f004c8 129 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 127 7.2E-23 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 HCD_04895 7f57235ca076b5597b49df65d2f004c8 129 Gene3D G3DSA:3.30.420.270 59 123 3.4E-5 T 13-10-2018 HCD_04895 7f57235ca076b5597b49df65d2f004c8 129 TIGRFAM TIGR02804 ExbD_2: TonB system transport protein ExbD 8 127 1.7E-44 T 13-10-2018 IPR014171 TonB system transport protein ExbD type-2 GO:0016020|GO:0055085 HCD_07120 78c8782083a81cd7e65c47e2f3c03087 379 Pfam PF00916 Sulfate permease family 155 346 9.8E-28 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 HCD_07120 78c8782083a81cd7e65c47e2f3c03087 379 Pfam PF00916 Sulfate permease family 8 133 1.6E-17 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 HCD_07540 d0b09dab41d1b1bbc6d76543156828dc 901 SUPERFAMILY SSF53335 182 548 3.68E-11 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase HCD_07540 d0b09dab41d1b1bbc6d76543156828dc 901 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 411 417 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 HCD_06395 5c93cf139113934da59f223f53052be9 331 Pfam PF03824 High-affinity nickel-transport protein 31 320 1.3E-90 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 HCD_06395 5c93cf139113934da59f223f53052be9 331 TIGRFAM TIGR00802 nico: transition metal uptake transporter, Ni2+-Co2+ transporter (NiCoT) family 34 315 1.6E-124 T 13-10-2018 IPR004688 Transition metal uptake transporter nickel/cobalt GO:0015099|GO:0016021|GO:0035444|GO:0046872 HCD_08045 787dad2a6b31b50d704916d13cb9c198 266 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 212 238 - T 13-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 HCD_08045 787dad2a6b31b50d704916d13cb9c198 266 Pfam PF01148 Cytidylyltransferase family 9 252 3.0E-51 T 13-10-2018 HCD_04370 5bed0828a83dfc9aa1b5a305c3dcc62a 376 Pfam PF12698 ABC-2 family transporter protein 18 362 4.1E-39 T 13-10-2018 HCD_07360 cda993e70625b4c0f42eb470f297a108 184 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 168 6.2E-13 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07360 cda993e70625b4c0f42eb470f297a108 184 Gene3D G3DSA:1.10.520.20 7 103 3.3E-6 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_07360 cda993e70625b4c0f42eb470f297a108 184 SUPERFAMILY SSF47928 4 104 1.7E-9 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 HCD_05870 fd2abf57b37098ee860f5c7268711c66 231 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 27 222 3.7E-45 T 13-10-2018 IPR006214 Bax inhibitor 1-related HCD_07615 179b8d18ff81062155a5d049f02a768b 378 Pfam PF08401 Domain of unknown function (DUF1738) 19 87 5.8E-5 T 13-10-2018 IPR013610 Domain of unknown function DUF1738 HCD_08195 2922c2aad5141de88d8406372e9d1beb 60 Pfam PF03750 Csm2 Type III-A 5 57 7.2E-6 T 13-10-2018 IPR010149 CRISPR-associated protein, Csm2 Type III-A HCD_02950 ec00b8af3bfecdb24dd61e611c936afb 234 SUPERFAMILY SSF53271 14 222 2.86E-24 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like HCD_02950 ec00b8af3bfecdb24dd61e611c936afb 234 Gene3D G3DSA:3.30.1310.20 68 131 4.4E-28 T 13-10-2018 HCD_02950 ec00b8af3bfecdb24dd61e611c936afb 234 Gene3D G3DSA:3.40.50.2020 16 219 4.4E-28 T 13-10-2018 HCD_02345 c3235de740aee28ad6648568b7a2c964 132 Pfam PF03692 Putative zinc- or iron-chelating domain 12 119 2.4E-16 T 13-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein HCD_08799 1ad846fa3caaf69cfd51ce615880ad2c 105 Pfam PF05713 Bacterial mobilisation protein (MobC) 54 101 1.9E-8 T 13-10-2018 IPR008687 Bacterial mobilisation HCD_08430 b396781d9bb34bd3d7ac4c237bd39ae3 812 SUPERFAMILY SSF55486 407 513 1.14E-5 T 13-10-2018 HCD_08430 b396781d9bb34bd3d7ac4c237bd39ae3 812 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 674 694 8.8E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_08430 b396781d9bb34bd3d7ac4c237bd39ae3 812 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 764 785 8.8E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_08430 b396781d9bb34bd3d7ac4c237bd39ae3 812 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 650 671 8.8E-5 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01130 e172eba44bada4369fcaf5a428193e8d 210 Pfam PF01810 LysE type translocator 13 200 7.7E-17 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 HCD_02735 d18371b6578242ae17fa4131c236723c 506 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 462 483 2.8E-8 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02735 d18371b6578242ae17fa4131c236723c 506 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 391 412 2.8E-8 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02735 d18371b6578242ae17fa4131c236723c 506 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 351 372 2.8E-8 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02735 d18371b6578242ae17fa4131c236723c 506 Pfam PF01856 Helicobacter outer membrane protein 363 506 1.7E-20 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02155 f8853fbdec78b1c9581edde755b70843 291 Gene3D G3DSA:3.40.50.2000 132 256 1.4E-16 T 13-10-2018 HCD_02155 f8853fbdec78b1c9581edde755b70843 291 SUPERFAMILY SSF53756 130 234 2.2E-5 T 13-10-2018 HCD_03970 32225f0f60cad08d1fecb4137bf2cdb3 72 SUPERFAMILY SSF50249 1 71 4.95E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold HCD_03970 32225f0f60cad08d1fecb4137bf2cdb3 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 1.8E-26 T 13-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 HCD_03970 32225f0f60cad08d1fecb4137bf2cdb3 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 24.446 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 HCD_03970 32225f0f60cad08d1fecb4137bf2cdb3 72 Gene3D G3DSA:2.40.50.140 1 72 2.1E-34 T 13-10-2018 HCD_03970 32225f0f60cad08d1fecb4137bf2cdb3 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 3.4E-31 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 HCD_03970 32225f0f60cad08d1fecb4137bf2cdb3 72 SMART SM00316 4 72 5.9E-4 T 13-10-2018 IPR022967 RNA-binding domain, S1 HCD_05970 f5665203f737d6adebe985a602503c66 179 Pfam PF01856 Helicobacter outer membrane protein 53 179 6.0E-22 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07810 1dae20ba4576b38beb11bf449fe4f80c 70 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 3 52 2.1E-23 T 13-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type HCD_07810 1dae20ba4576b38beb11bf449fe4f80c 70 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 4 46 1.9E-17 T 13-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type HCD_07950 73715cb8c2b6529060dc71bed653643f 809 SUPERFAMILY SSF52540 437 739 1.26E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_07950 73715cb8c2b6529060dc71bed653643f 809 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 214 410 2.2E-36 T 13-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 HCD_05340 735b8dd619626c758ae2e55e7fb943c0 334 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 1 246 8.6E-57 T 13-10-2018 IPR002654 Glycosyl transferase, family 25 HCD_02685 1096622786e1cc92b1752f5a00a33627 248 Gene3D G3DSA:3.60.21.10 8 246 8.4E-9 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like HCD_02685 1096622786e1cc92b1752f5a00a33627 248 SUPERFAMILY SSF56300 12 235 1.29E-14 T 13-10-2018 HCD_07815 22fb8f56b505dd00d3529a2ef1714906 193 Pfam PF09335 SNARE associated Golgi protein 44 144 1.2E-11 T 13-10-2018 IPR032816 SNARE associated Golgi protein HCD_00150 d836737e17b3621620bba704480fa4ca 710 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 575 596 5.9E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00150 d836737e17b3621620bba704480fa4ca 710 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 528 549 5.9E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00150 d836737e17b3621620bba704480fa4ca 710 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 554 574 5.9E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00150 d836737e17b3621620bba704480fa4ca 710 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 670 691 5.9E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00150 d836737e17b3621620bba704480fa4ca 710 Pfam PF01856 Helicobacter outer membrane protein 539 710 7.4E-50 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05570 5b03eb18251f98203c5255fadf6ed584 499 Pfam PF02521 Putative outer membrane protein 13 498 1.1E-180 T 13-10-2018 IPR003678 Putative outer membrane protein HCD_04635 61b99c5d0ca898708e84c1f9869d9df4 619 SUPERFAMILY SSF52540 2 588 8.5E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_04635 61b99c5d0ca898708e84c1f9869d9df4 619 Pfam PF13361 UvrD-like helicase C-terminal domain 368 583 5.7E-10 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 HCD_04635 61b99c5d0ca898708e84c1f9869d9df4 619 Pfam PF13245 AAA domain 5 232 3.2E-18 T 13-10-2018 HCD_02535 5e1d80fdceb529aa047cd936c544c03c 345 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 337 4.4E-35 T 13-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 HCD_06230 783c539fe0c02999dec70df8db1becf3 94 SUPERFAMILY SSF158752 5 93 9.55E-27 T 13-10-2018 IPR023126 HP0242-like superfamily HCD_06230 783c539fe0c02999dec70df8db1becf3 94 Pfam PF09442 Domain of unknown function (DUF2018) 10 94 5.5E-26 T 13-10-2018 IPR018563 Protein of unknown function DUF2018 HCD_06230 783c539fe0c02999dec70df8db1becf3 94 Gene3D G3DSA:1.20.120.1980 12 94 6.2E-41 T 13-10-2018 HCD_06490 fd50e8796c68f505d9f974e53255cb4a 393 Gene3D G3DSA:3.40.50.2000 215 383 7.9E-42 T 13-10-2018 HCD_06490 fd50e8796c68f505d9f974e53255cb4a 393 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 34 202 3.6E-39 T 13-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 HCD_06490 fd50e8796c68f505d9f974e53255cb4a 393 Gene3D G3DSA:3.40.50.11720 29 203 1.4E-33 T 13-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 HCD_07335 0c15d460d542b4c66204458f97d883bd 170 Pfam PF01618 MotA/TolQ/ExbB proton channel family 36 152 6.7E-30 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel HCD_05350 80ca36087b4ae3a9ba9ec52ff0544f21 198 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 15 160 8.6E-41 T 13-10-2018 IPR002654 Glycosyl transferase, family 25 HCD_04115 439aabc97b91db118d6c585ab2e85078 409 Gene3D G3DSA:1.20.1600.10 26 409 8.1E-22 T 13-10-2018 HCD_04115 439aabc97b91db118d6c585ab2e85078 409 Pfam PF02321 Outer membrane efflux protein 33 201 1.7E-6 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 HCD_04115 439aabc97b91db118d6c585ab2e85078 409 Pfam PF02321 Outer membrane efflux protein 233 363 1.1E-14 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 HCD_04115 439aabc97b91db118d6c585ab2e85078 409 SUPERFAMILY SSF56954 12 407 1.28E-29 T 13-10-2018 HCD_07570 b23b30f0627ccdbf254deab65f68d613 421 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 146 273 5.3E-8 T 13-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 HCD_01545 e2da1242f7f8f4b6529bb57961b561a3 145 SUPERFAMILY SSF161070 2 144 1.7E-25 T 13-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 HCD_01715 c47974eda3735d1159ba6a15c0b4f6c3 311 Pfam PF05066 HB1, ASXL, restriction endonuclease HTH domain 27 74 6.0E-6 T 13-10-2018 IPR007759 HB1/Asxl, restriction endonuclease HTH domain GO:0006351|GO:0006355 HCD_08744 5e46aa3abe8b4a7515dbf9415602be04 113 Pfam PF05713 Bacterial mobilisation protein (MobC) 67 104 2.5E-6 T 13-10-2018 IPR008687 Bacterial mobilisation HCD_00095 60014491868f312cc6a6de8a55a0d07e 348 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 44 253 9.0E-6 T 13-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 HCD_01435 45187a857a15efb643238bcdf1fbecb3 216 Pfam PF04224 Protein of unknown function, DUF417 6 190 2.5E-77 T 13-10-2018 IPR007339 Inner membrane protein RclC-like HCD_08425 3f624fc73e460fccada2840795a73773 228 Pfam PF00005 ABC transporter 18 154 2.8E-21 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 HCD_08425 3f624fc73e460fccada2840795a73773 228 SUPERFAMILY SSF52540 2 221 2.02E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase HCD_08425 3f624fc73e460fccada2840795a73773 228 SMART SM00382 27 210 1.9E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain HCD_08425 3f624fc73e460fccada2840795a73773 228 Gene3D G3DSA:3.40.50.300 1 226 6.7E-44 T 13-10-2018 HCD_00045 5660071701cfc3ccc9f5e8fe632d6017 519 Pfam PF01856 Helicobacter outer membrane protein 345 519 7.3E-51 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00045 5660071701cfc3ccc9f5e8fe632d6017 519 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 479 500 2.6E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00045 5660071701cfc3ccc9f5e8fe632d6017 519 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 360 380 2.6E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00045 5660071701cfc3ccc9f5e8fe632d6017 519 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 334 355 2.6E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00045 5660071701cfc3ccc9f5e8fe632d6017 519 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 381 402 2.6E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_05850 545a6171b9d9dbee78a853b58f1e8e90 475 Pfam PF02521 Putative outer membrane protein 18 475 4.0E-141 T 13-10-2018 IPR003678 Putative outer membrane protein HCD_04155 f8e69a0ed32224a77bf53ea8a315d34f 235 Gene3D G3DSA:3.30.2010.10 137 231 1.2E-16 T 13-10-2018 HCD_04155 f8e69a0ed32224a77bf53ea8a315d34f 235 Pfam PF01863 Protein of unknown function DUF45 24 229 5.2E-54 T 13-10-2018 IPR002725 Protein of unknown function DUF45 HCD_02500 db837210df347fe767015bfe9ac8dfa0 310 Pfam PF01856 Helicobacter outer membrane protein 126 310 1.4E-34 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02500 db837210df347fe767015bfe9ac8dfa0 310 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 143 163 8.5E-16 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02500 db837210df347fe767015bfe9ac8dfa0 310 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 115 136 8.5E-16 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02500 db837210df347fe767015bfe9ac8dfa0 310 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 250 271 8.5E-16 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_02500 db837210df347fe767015bfe9ac8dfa0 310 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 172 193 8.5E-16 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_03690 5bf831c2077e01f743dad5d90f33c9b2 215 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 211 2.1E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 HCD_03690 5bf831c2077e01f743dad5d90f33c9b2 215 SUPERFAMILY SSF161098 5 197 2.62E-36 T 13-10-2018 IPR035906 MetI-like superfamily HCD_03690 5bf831c2077e01f743dad5d90f33c9b2 215 Gene3D G3DSA:1.10.3720.10 1 213 1.4E-38 T 13-10-2018 IPR035906 MetI-like superfamily HCD_07370 b0e7f65c8479b478623663d5c2e976b8 144 Pfam PF00430 ATP synthase B/B' CF(0) 12 126 5.5E-12 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 HCD_03195 862e8dc2db99b0811ddb7c528fc38fef 68 Pfam PF13179 Family of unknown function (DUF4006) 4 57 4.6E-16 T 13-10-2018 IPR025065 Protein of unknown function DUF4006 HCD_08285 236ffc9f2a0f8b924adf53c36fdcdc11 306 Pfam PF03432 Relaxase/Mobilisation nuclease domain 54 243 3.7E-17 T 13-10-2018 IPR005094 Endonuclease relaxase, MobA/VirD2 HCD_08110 b180f816f691d3f945ce9467906cf316 99 Pfam PF13391 HNH endonuclease 4 49 2.6E-6 T 13-10-2018 IPR003615 HNH nuclease HCD_04295 0b19169ecaf063bb38737e2e74e072d1 199 SUPERFAMILY SSF116734 1 138 9.16E-7 T 13-10-2018 HCD_08640 f530c960f7a52dc63bc5a89d3a5deb8b 247 Pfam PF03981 Ubiquinol-cytochrome C chaperone 54 226 3.5E-26 T 13-10-2018 IPR021150 Ubiquinol-cytochrome c chaperone/UPF0174 HCD_08640 f530c960f7a52dc63bc5a89d3a5deb8b 247 Pfam PF13099 Domain of unknown function (DUF3944) 3 37 7.6E-16 T 13-10-2018 IPR025217 Domain of unknown function DUF3944 HCD_00595 4860093dcd2bae91f5b9f20c49e85901 90 Pfam PF07510 Protein of unknown function (DUF1524) 54 90 7.1E-7 T 13-10-2018 IPR011089 Domain of unknown function DUF1524 HCD_06270 ec5e55eea18650ba5e775871dfb5184a 285 Pfam PF01925 Sulfite exporter TauE/SafE 13 274 7.7E-38 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 HCD_08205 613b2bc87e8f015c2a823554e900596b 69 Gene3D G3DSA:3.30.70.2230 1 69 3.0E-23 T 13-10-2018 HCD_08290 9ff0a0cd0bb5a784056467dc1ba3014c 113 Pfam PF05713 Bacterial mobilisation protein (MobC) 66 104 1.1E-6 T 13-10-2018 IPR008687 Bacterial mobilisation HCD_07755 230afe110973e1dae477a21a0c652b00 413 Pfam PF03222 Tryptophan/tyrosine permease family 26 409 1.7E-17 T 13-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 HCD_01405 89d663b2076e26f8b425964b6ed134fc 192 Pfam PF09335 SNARE associated Golgi protein 30 147 1.6E-14 T 13-10-2018 IPR032816 SNARE associated Golgi protein HCD_02315 f327dcaf4f9e2799123684f2977670eb 330 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 21 319 9.9E-92 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 HCD_05345 2b900ae66acaea3695a3b9c26f119a3b 218 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 83 142 1.6E-11 T 13-10-2018 IPR002654 Glycosyl transferase, family 25 HCD_06265 82199a0b5ed5ec863dc5ed6d45708522 179 Pfam PF09624 Protein of unknown function (DUF2393) 37 178 1.2E-34 T 13-10-2018 IPR013417 Conserved hypothetical protein CHP02588 HCD_02775 451861c1aa8bf3463a3c160db993a8e3 381 Gene3D G3DSA:1.20.1530.20 2 381 4.6E-38 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily HCD_02775 451861c1aa8bf3463a3c160db993a8e3 381 Pfam PF00999 Sodium/hydrogen exchanger family 10 377 1.4E-41 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 HCD_03610 2b0f5c5afa4d8d421b30db1235721c64 264 Hamap MF_01384 Urease accessory protein UreD [ureD]. 6 261 21.698 T 13-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 HCD_03610 2b0f5c5afa4d8d421b30db1235721c64 264 Pfam PF01774 UreD urease accessory protein 49 249 3.9E-38 T 13-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 HCD_05670 e14dd27fa6fe627dcf464b63573b6691 265 Pfam PF13084 Domain of unknown function (DUF3943) 120 229 9.1E-37 T 13-10-2018 IPR025079 Domain of unknown function DUF3943 HCD_05060 6fb62e107d0f69ac97ac9f0378b374b1 256 SUPERFAMILY SSF46689 5 49 2.87E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 HCD_07145 54caf806832cf95e42e12b232f86fb0c 87 SUPERFAMILY SSF103473 18 62 6.15E-5 T 13-10-2018 IPR036259 MFS transporter superfamily HCD_07145 54caf806832cf95e42e12b232f86fb0c 87 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 13 63 4.2E-11 T 13-10-2018 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter HCD_05695 075b6e81eb4786b23e11925497e64549 291 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 46 231 5.3E-46 T 13-10-2018 IPR002654 Glycosyl transferase, family 25 HCD_04770 f47d15648de99bd9e7e95f01ce296810 622 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 437 458 5.0E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04770 f47d15648de99bd9e7e95f01ce296810 622 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 463 483 5.0E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04770 f47d15648de99bd9e7e95f01ce296810 622 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 484 505 5.0E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04770 f47d15648de99bd9e7e95f01ce296810 622 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 582 603 5.0E-44 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_04770 f47d15648de99bd9e7e95f01ce296810 622 Pfam PF01856 Helicobacter outer membrane protein 448 622 1.3E-50 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_00900 6b5715f4477063a94505761243992962 253 SUPERFAMILY SSF46689 5 49 2.87E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 HCD_03835 80da2dfb4b073fd7014a1a6df17bcabf 136 Pfam PF04519 Polymer-forming cytoskeletal 19 114 1.5E-22 T 13-10-2018 IPR007607 Bactofilin A/B HCD_07045 faf026268991274ae035320a04eea75e 51 SUPERFAMILY SSF140931 4 47 8.37E-5 T 13-10-2018 IPR036597 Fido-like domain superfamily HCD_04440 00415c54e58d7f9ca7cc0d5782104387 385 Pfam PF04393 Protein of unknown function (DUF535) 155 370 3.6E-16 T 13-10-2018 IPR007488 Protein of unknown function DUF535 HCD_06575 51c6fae052fd4fb9ad9183fe2c99eafd 99 Pfam PF00872 Transposase, Mutator family 5 94 9.0E-24 T 13-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 HCD_08135 5b465a53500fbe0fdc3a11a890475ee3 315 Pfam PF01856 Helicobacter outer membrane protein 138 315 2.8E-24 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07960 deebf1038f28f76dc40e4ef7e22030e1 101 Pfam PF04956 TrbC/VIRB2 family 10 87 1.2E-12 T 13-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 HCD_01070 e81cc96a3968e941dbf559db525c2587 653 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 605 626 6.0E-6 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01070 e81cc96a3968e941dbf559db525c2587 653 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 488 509 6.0E-6 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_01070 e81cc96a3968e941dbf559db525c2587 653 PRINTS PR01776 Helicobacter pylori outer membrane protein family signature 512 532 6.0E-6 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07105 fca8f9a05bb666604f9dddabc31c1b91 212 Hamap MF_01421 UPF0323 lipoprotein . 2 212 35.079 T 13-10-2018 IPR020913 Uncharacterised protein family UPF0323 HCD_01485 b10255968eb57e9533bc65a7153ce023 472 Pfam PF01856 Helicobacter outer membrane protein 316 472 5.3E-17 T 13-10-2018 IPR002718 Outer membrane protein, Helicobacter HCD_07325 d64adc7f95d7758594d119f80ab57d85 251 Pfam PF13103 TonB C terminal 164 245 1.8E-12 T 13-10-2018 HCD_04960 50af6a37b51609ee8c7612cd2c9da8bd 248 Pfam PF04393 Protein of unknown function (DUF535) 13 243 9.3E-34 T 13-10-2018 IPR007488 Protein of unknown function DUF535