locus-tag class description CV728_00005 PF08299 Bacterial dnaA protein helix-turn-helix CV728_00005 PF00308 Bacterial dnaA protein CV728_00020 PF03372 Endonuclease/Exonuclease/phosphatase family CV728_00035 PF04851 Type III restriction enzyme, res subunit CV728_00035 PF00271 Helicase conserved C-terminal domain CV728_00040 PF01555 DNA methylase CV728_00040 PF18273 Type III R-M EcoP15I C-terminal domain CV728_00045 PF04851 Type III restriction enzyme, res subunit CV728_00045 PF08774 VRR-NUC domain CV728_00060 PF13274 Protein of unknown function (DUF4065) CV728_00070 PF13184 NusA-like KH domain CV728_00070 PF08529 NusA N-terminal domain CV728_00075 PF03841 L-seryl-tRNA selenium transferase CV728_00095 PF02660 Glycerol-3-phosphate acyltransferase CV728_00100 PF12801 4Fe-4S binding domain CV728_00100 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CV728_00100 PF13746 4Fe-4S dicluster domain CV728_00105 PF16653 Saccharopine dehydrogenase C-terminal domain CV728_00105 PF03435 Saccharopine dehydrogenase NADP binding domain CV728_00110 PF03616 Sodium/glutamate symporter CV728_00115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CV728_00115 PF01872 RibD C-terminal domain CV728_00120 PF05175 Methyltransferase small domain CV728_00150 PF01195 Peptidyl-tRNA hydrolase CV728_00155 PF14693 Ribosomal protein TL5, C-terminal domain CV728_00155 PF01386 Ribosomal L25p family CV728_00160 PF00923 Transaldolase/Fructose-6-phosphate aldolase CV728_00165 PF02875 Mur ligase family, glutamate ligase domain CV728_00165 PF08245 Mur ligase middle domain CV728_00175 PF01106 NifU-like domain CV728_00180 PF01384 Phosphate transporter family CV728_00185 PF00571 CBS domain CV728_00185 PF01595 Cyclin M transmembrane N-terminal domain CV728_00185 PF03471 Transporter associated domain CV728_00195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CV728_00210 PF01205 Uncharacterized protein family UPF0029 CV728_00210 PF09186 Domain of unknown function (DUF1949) CV728_00220 PF01209 ubiE/COQ5 methyltransferase family CV728_00225 PF02609 Exonuclease VII small subunit CV728_00235 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CV728_00235 PF02403 Seryl-tRNA synthetase N-terminal domain CV728_00255 PF02441 Flavoprotein CV728_00260 PF01467 Cytidylyltransferase-like CV728_00265 PF02223 Thymidylate kinase CV728_00285 PF00145 C-5 cytosine-specific DNA methylase CV728_00285 PF01381 Helix-turn-helix CV728_00300 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CV728_00300 PF01367 5'-3' exonuclease, C-terminal SAM fold CV728_00300 PF00476 DNA polymerase family A CV728_00310 PF01063 Amino-transferase class IV CV728_00320 PF02405 Permease MlaE CV728_00325 PF00005 ABC transporter CV728_00325 PF09383 NIL domain CV728_00345 PF03150 Di-haem cytochrome c peroxidase CV728_00345 PF00034 Cytochrome c CV728_00350 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CV728_00350 PF07733 Bacterial DNA polymerase III alpha NTPase domain CV728_00350 PF02811 PHP domain CV728_00350 PF14579 Helix-hairpin-helix motif CV728_00355 PF00849 RNA pseudouridylate synthase CV728_00355 PF01479 S4 domain CV728_00360 PF00085 Thioredoxin CV728_00370 PF02169 LPP20 lipoprotein CV728_00400 PF01926 50S ribosome-binding GTPase CV728_00400 PF12631 MnmE helical domain CV728_00400 PF10396 GTP-binding protein TrmE N-terminus CV728_00410 PF14849 YidC periplasmic domain CV728_00410 PF02096 60Kd inner membrane protein CV728_00415 PF01809 Putative membrane protein insertion efficiency factor CV728_00420 PF00825 Ribonuclease P CV728_00425 PF00468 Ribosomal protein L34 CV728_00430 PF02472 Biopolymer transport protein ExbD/TolR CV728_00435 PF01618 MotA/TolQ/ExbB proton channel family CV728_00440 PF01668 SmpB protein CV728_00445 PF00288 GHMP kinases N terminal domain CV728_00450 PF02599 Global regulator protein family CV728_00455 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CV728_00500 PF00551 Formyl transferase CV728_00500 PF01842 ACT domain CV728_00520 PF00398 Ribosomal RNA adenine dimethylase CV728_00525 PF17770 Ribonuclease J C-terminal domain CV728_00525 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CV728_00525 PF00753 Metallo-beta-lactamase superfamily CV728_00530 PF01380 SIS domain CV728_00530 PF00571 CBS domain CV728_00535 PF04055 Radical SAM superfamily CV728_00555 PF01479 S4 domain CV728_00560 PF00133 tRNA synthetases class I (I, L, M and V) CV728_00560 PF08264 Anticodon-binding domain of tRNA CV728_00565 PF00437 Type II/IV secretion system protein CV728_00570 PF18269 T3SS EscN ATPase C-terminal domain CV728_00570 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CV728_00575 PF01313 Bacterial export proteins, family 3 CV728_00580 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CV728_00595 PF03572 Peptidase family S41 CV728_00595 PF13180 PDZ domain CV728_00605 PF01553 Acyltransferase CV728_00610 PF03167 Uracil DNA glycosylase superfamily CV728_00620 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CV728_00620 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CV728_00625 PF00162 Phosphoglycerate kinase CV728_00630 PF01544 CorA-like Mg2+ transporter protein CV728_00635 PF03741 Integral membrane protein TerC family CV728_00645 PF03544 Gram-negative bacterial TonB protein C-terminal CV728_00650 PF02472 Biopolymer transport protein ExbD/TolR CV728_00655 PF01618 MotA/TolQ/ExbB proton channel family CV728_00665 PF01402 Ribbon-helix-helix protein, copG family CV728_00665 PF08753 NikR C terminal nickel binding domain CV728_00670 PF01467 Cytidylyltransferase-like CV728_00690 PF00684 DnaJ central domain CV728_00690 PF00226 DnaJ domain CV728_00690 PF01556 DnaJ C terminal domain CV728_00695 PF03591 AzlC protein CV728_00700 PF05437 Branched-chain amino acid transport protein (AzlD) CV728_00705 PF00873 AcrB/AcrD/AcrF family CV728_00710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CV728_00710 PF00529 HlyD membrane-fusion protein of T1SS CV728_00725 PF00206 Lyase CV728_00725 PF10415 Fumarase C C-terminus CV728_00735 PF01351 Ribonuclease HII CV728_00750 PF00338 Ribosomal protein S10p/S20e CV728_00755 PF00297 Ribosomal protein L3 CV728_00760 PF00573 Ribosomal protein L4/L1 family CV728_00765 PF00276 Ribosomal protein L23 CV728_00770 PF03947 Ribosomal Proteins L2, C-terminal domain CV728_00770 PF00181 Ribosomal Proteins L2, RNA binding domain CV728_00775 PF00203 Ribosomal protein S19 CV728_00780 PF00237 Ribosomal protein L22p/L17e CV728_00785 PF07650 KH domain CV728_00785 PF00189 Ribosomal protein S3, C-terminal domain CV728_00790 PF00252 Ribosomal protein L16p/L10e CV728_00795 PF00831 Ribosomal L29 protein CV728_00800 PF00366 Ribosomal protein S17 CV728_00805 PF00238 Ribosomal protein L14p/L23e CV728_00810 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CV728_00810 PF00467 KOW motif CV728_00815 PF00673 ribosomal L5P family C-terminus CV728_00815 PF00281 Ribosomal protein L5 CV728_00820 PF00253 Ribosomal protein S14p/S29e CV728_00825 PF00410 Ribosomal protein S8 CV728_00830 PF00347 Ribosomal protein L6 CV728_00835 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CV728_00840 PF00333 Ribosomal protein S5, N-terminal domain CV728_00840 PF03719 Ribosomal protein S5, C-terminal domain CV728_00845 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CV728_00850 PF00344 SecY translocase CV728_00855 PF00557 Metallopeptidase family M24 CV728_00860 PF01176 Translation initiation factor 1A / IF-1 CV728_00865 PF00444 Ribosomal protein L36 CV728_00870 PF00416 Ribosomal protein S13/S18 CV728_00875 PF00411 Ribosomal protein S11 CV728_00880 PF00163 Ribosomal protein S4/S9 N-terminal domain CV728_00880 PF01479 S4 domain CV728_00885 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CV728_00885 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CV728_00885 PF01000 RNA polymerase Rpb3/RpoA insert domain CV728_00890 PF01196 Ribosomal protein L17 CV728_00900 PF04973 Nicotinamide mononucleotide transporter CV728_00915 PF03070 TENA/THI-4/PQQC family CV728_00920 PF04264 YceI-like domain CV728_00930 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CV728_00935 PF04715 Anthranilate synthase component I, N terminal region CV728_00935 PF00425 chorismate binding enzyme CV728_00940 PF00117 Glutamine amidotransferase class-I CV728_00945 PF02885 Glycosyl transferase family, helical bundle domain CV728_00945 PF00591 Glycosyl transferase family, a/b domain CV728_00950 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CV728_00950 PF00218 Indole-3-glycerol phosphate synthase CV728_00955 PF00291 Pyridoxal-phosphate dependent enzyme CV728_00960 PF00290 Tryptophan synthase alpha chain CV728_00970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CV728_00970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CV728_00970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CV728_00970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CV728_00980 PF00361 Proton-conducting membrane transporter CV728_00985 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CV728_00985 PF00361 Proton-conducting membrane transporter CV728_00990 PF00361 Proton-conducting membrane transporter CV728_00990 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CV728_00995 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CV728_01000 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CV728_01005 PF12838 4Fe-4S dicluster domain CV728_01010 PF00146 NADH dehydrogenase CV728_01015 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CV728_01015 PF01568 Molydopterin dinucleotide binding domain CV728_01015 PF00384 Molybdopterin oxidoreductase CV728_01015 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CV728_01015 PF12838 4Fe-4S dicluster domain CV728_01030 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CV728_01035 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CV728_01040 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CV728_01045 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CV728_01050 PF02146 Sir2 family CV728_01060 PF00156 Phosphoribosyl transferase domain CV728_01065 PF01765 Ribosome recycling factor CV728_01070 PF03840 Preprotein translocase SecG subunit CV728_01080 PF00579 tRNA synthetases class I (W and Y) CV728_01090 PF00528 Binding-protein-dependent transport system inner membrane component CV728_01100 PF08501 Shikimate dehydrogenase substrate binding domain CV728_01105 PF00773 RNB domain CV728_01110 PF06144 DNA polymerase III, delta subunit CV728_01120 PF01250 Ribosomal protein S6 CV728_01125 PF00436 Single-strand binding protein family CV728_01130 PF01084 Ribosomal protein S18 CV728_01150 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CV728_01150 PF01411 tRNA synthetases class II (A) CV728_01150 PF02272 DHHA1 domain CV728_01155 PF02545 Maf-like protein CV728_01165 PF00795 Carbon-nitrogen hydrolase CV728_01170 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CV728_01170 PF00117 Glutamine amidotransferase class-I CV728_01185 PF00892 EamA-like transporter family CV728_01195 PF00809 Pterin binding enzyme CV728_01200 PF12169 DNA polymerase III subunits gamma and tau domain III CV728_01210 PF13840 ACT domain CV728_01210 PF01842 ACT domain CV728_01210 PF00696 Amino acid kinase family CV728_01215 PF00293 NUDIX domain CV728_01220 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CV728_01225 PF04055 Radical SAM superfamily CV728_01230 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CV728_01250 PF01255 Putative undecaprenyl diphosphate synthase CV728_01255 PF00005 ABC transporter CV728_01280 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CV728_01280 PF02843 Phosphoribosylglycinamide synthetase, C domain CV728_01280 PF02844 Phosphoribosylglycinamide synthetase, N domain CV728_01290 PF04453 LPS transport system D CV728_01290 PF03968 OstA-like protein CV728_01300 PF00013 KH domain CV728_01300 PF03725 3' exoribonuclease family, domain 2 CV728_01300 PF01138 3' exoribonuclease family, domain 1 CV728_01300 PF00575 S1 RNA binding domain CV728_01305 PF00137 ATP synthase subunit C CV728_01320 PF00132 Bacterial transferase hexapeptide (six repeats) CV728_01325 PF05315 ICEA Protein CV728_01330 PF05315 ICEA Protein CV728_01335 PF05315 ICEA Protein CV728_01340 PF02086 D12 class N6 adenine-specific DNA methyltransferase CV728_01350 PF00664 ABC transporter transmembrane region CV728_01350 PF00005 ABC transporter CV728_01375 PF00009 Elongation factor Tu GTP binding domain CV728_01375 PF03144 Elongation factor Tu domain 2 CV728_01375 PF03143 Elongation factor Tu C-terminal domain CV728_01380 PF00471 Ribosomal protein L33 CV728_01395 PF02357 Transcription termination factor nusG CV728_01400 PF00298 Ribosomal protein L11, RNA binding domain CV728_01400 PF03946 Ribosomal protein L11, N-terminal domain CV728_01405 PF00687 Ribosomal protein L1p/L10e family CV728_01410 PF00466 Ribosomal protein L10 CV728_01415 PF00542 Ribosomal protein L7/L12 C-terminal domain CV728_01415 PF16320 Ribosomal protein L7/L12 dimerisation domain CV728_01425 PF05000 RNA polymerase Rpb1, domain 4 CV728_01425 PF04983 RNA polymerase Rpb1, domain 3 CV728_01425 PF00623 RNA polymerase Rpb1, domain 2 CV728_01425 PF04998 RNA polymerase Rpb1, domain 5 CV728_01425 PF04561 RNA polymerase Rpb2, domain 2 CV728_01425 PF10385 RNA polymerase beta subunit external 1 domain CV728_01425 PF00562 RNA polymerase Rpb2, domain 6 CV728_01425 PF04560 RNA polymerase Rpb2, domain 7 CV728_01425 PF04997 RNA polymerase Rpb1, domain 1 CV728_01425 PF04565 RNA polymerase Rpb2, domain 3 CV728_01425 PF04563 RNA polymerase beta subunit CV728_01430 PF00164 Ribosomal protein S12/S23 CV728_01435 PF00177 Ribosomal protein S7p/S5e CV728_01440 PF00009 Elongation factor Tu GTP binding domain CV728_01440 PF03764 Elongation factor G, domain IV CV728_01440 PF03144 Elongation factor Tu domain 2 CV728_01440 PF14492 Elongation Factor G, domain II CV728_01440 PF00679 Elongation factor G C-terminus CV728_01445 PF00248 Aldo/keto reductase family CV728_01460 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CV728_01465 PF13393 Histidyl-tRNA synthetase CV728_01465 PF03129 Anticodon binding domain CV728_01470 PF01118 Semialdehyde dehydrogenase, NAD binding domain CV728_01470 PF02774 Semialdehyde dehydrogenase, dimerisation domain CV728_01485 PF00194 Eukaryotic-type carbonic anhydrase CV728_01490 PF07690 Major Facilitator Superfamily CV728_01500 PF02080 TrkA-C domain CV728_01500 PF00999 Sodium/hydrogen exchanger family CV728_01500 PF02254 TrkA-N domain CV728_01505 PF01171 PP-loop family CV728_01510 PF07690 Major Facilitator Superfamily CV728_01520 PF07662 Na+ dependent nucleoside transporter C-terminus CV728_01520 PF01773 Na+ dependent nucleoside transporter N-terminus CV728_01525 PF01676 Metalloenzyme superfamily CV728_01530 PF01048 Phosphorylase superfamily CV728_01545 PF00860 Permease family CV728_01550 PF07690 Major Facilitator Superfamily CV728_01565 PF00005 ABC transporter CV728_01570 PF00528 Binding-protein-dependent transport system inner membrane component CV728_01575 PF00528 Binding-protein-dependent transport system inner membrane component CV728_01580 PF02554 Carbon starvation protein CstA CV728_01580 PF13722 5TM C-terminal transporter carbon starvation CstA CV728_01595 PF00342 Phosphoglucose isomerase CV728_01605 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV728_01620 PF00258 Flavodoxin CV728_01625 PF02130 Uncharacterized protein family UPF0054 CV728_01630 PF02661 Fic/DOC family CV728_01635 PF03807 NADP oxidoreductase coenzyme F420-dependent CV728_01635 PF14748 Pyrroline-5-carboxylate reductase dimerisation CV728_01650 PF04101 Glycosyltransferase family 28 C-terminal domain CV728_01650 PF03033 Glycosyltransferase family 28 N-terminal domain CV728_01655 PF02623 FliW protein CV728_01660 PF00133 tRNA synthetases class I (I, L, M and V) CV728_01660 PF10458 Valyl tRNA synthetase tRNA binding arm CV728_01660 PF08264 Anticodon-binding domain of tRNA CV728_01665 PF00448 SRP54-type protein, GTPase domain CV728_01665 PF02881 SRP54-type protein, helical bundle domain CV728_01665 PF02978 Signal peptide binding domain CV728_01670 PF00886 Ribosomal protein S16 CV728_01680 PF01782 RimM N-terminal domain CV728_01680 PF05239 PRC-barrel domain CV728_01685 PF01746 tRNA (Guanine-1)-methyltransferase CV728_01690 PF01245 Ribosomal protein L19 CV728_01730 PF02911 Formyl transferase, C-terminal domain CV728_01730 PF00551 Formyl transferase CV728_01735 PF03099 Biotin/lipoate A/B protein ligase family CV728_01735 PF03309 Type III pantothenate kinase CV728_01735 PF02237 Biotin protein ligase C terminal domain CV728_01740 PF13614 AAA domain CV728_01745 PF02195 ParB-like nuclease domain CV728_01745 PF17762 HTH domain found in ParB protein CV728_01755 PF00430 ATP synthase B/B' CF(0) CV728_01765 PF00306 ATP synthase alpha/beta chain, C terminal domain CV728_01765 PF02874 ATP synthase alpha/beta family, beta-barrel domain CV728_01765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CV728_01770 PF00231 ATP synthase CV728_01775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CV728_01775 PF02874 ATP synthase alpha/beta family, beta-barrel domain CV728_01780 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CV728_01785 PF01618 MotA/TolQ/ExbB proton channel family CV728_01790 PF02472 Biopolymer transport protein ExbD/TolR CV728_01800 PF07676 WD40-like Beta Propeller Repeat CV728_01805 PF00691 OmpA family CV728_01815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CV728_01830 PF00145 C-5 cytosine-specific DNA methylase CV728_01840 PF00460 Flagella basal body rod protein CV728_01840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CV728_01840 PF07559 Flagellar basal body protein FlaE CV728_01875 PF02151 UvrB/uvrC motif CV728_01875 PF12344 Ultra-violet resistance protein B CV728_01875 PF17757 UvrB interaction domain CV728_01875 PF00271 Helicase conserved C-terminal domain CV728_01875 PF04851 Type III restriction enzyme, res subunit CV728_01885 PF10397 Adenylosuccinate lyase C-terminus CV728_01885 PF00206 Lyase CV728_01890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CV728_01895 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CV728_01895 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CV728_01905 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CV728_01935 PF08240 Alcohol dehydrogenase GroES-like domain CV728_01935 PF00107 Zinc-binding dehydrogenase CV728_01940 PF02685 Glucokinase CV728_01945 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CV728_01950 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CV728_01950 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CV728_01955 PF00920 Dehydratase family CV728_01960 PF01081 KDPG and KHG aldolase CV728_01965 PF08238 Sel1 repeat CV728_01970 PF00106 short chain dehydrogenase CV728_01990 PF01370 NAD dependent epimerase/dehydratase family CV728_01995 PF01416 tRNA pseudouridine synthase CV728_02010 PF00268 Ribonucleotide reductase, small chain CV728_02020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CV728_02040 PF00289 Biotin carboxylase, N-terminal domain CV728_02040 PF02785 Biotin carboxylase C-terminal domain CV728_02040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CV728_02045 PF00364 Biotin-requiring enzyme CV728_02050 PF00692 dUTPase CV728_02060 PF04452 RNA methyltransferase CV728_02070 PF00762 Ferrochelatase CV728_02080 PF01578 Cytochrome C assembly protein CV728_02080 PF05140 ResB-like family CV728_02085 PF00852 Glycosyltransferase family 10 (fucosyltransferase) C-term CV728_02085 PF18025 Alpha-(1,3)-fucosyltransferase FucT N-terminal domain CV728_02090 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CV728_02090 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CV728_02095 PF05175 Methyltransferase small domain CV728_02095 PF17827 PrmC N-terminal domain CV728_02100 PF01435 Peptidase family M48 CV728_02125 PF18074 Primosomal protein N C-terminal domain CV728_02125 PF00270 DEAD/DEAH box helicase CV728_02125 PF00271 Helicase conserved C-terminal domain CV728_02125 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CV728_02125 PF17764 3′ DNA-binding domain (3′BD) CV728_02130 PF13649 Methyltransferase domain CV728_02135 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CV728_02135 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CV728_02140 PF08534 Redoxin CV728_02150 PF07194 P2 response regulator binding domain CV728_02150 PF01627 Hpt domain CV728_02150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV728_02150 PF02895 Signal transducing histidine kinase, homodimeric domain CV728_02150 PF01584 CheW-like domain CV728_02155 PF01584 CheW-like domain CV728_02155 PF00072 Response regulator receiver domain CV728_02165 PF01168 Alanine racemase, N-terminal domain CV728_02170 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CV728_02175 PF01842 ACT domain CV728_02175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CV728_02175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CV728_02185 PF00575 S1 RNA binding domain CV728_02190 PF02401 LytB protein CV728_02195 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CV728_02200 PF01588 Putative tRNA binding domain CV728_02200 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CV728_02200 PF03147 Ferredoxin-fold anticodon binding domain CV728_02200 PF03484 tRNA synthetase B5 domain CV728_02205 PF01409 tRNA synthetases class II core domain (F) CV728_02205 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CV728_02210 PF01230 HIT domain CV728_02215 PF02347 Glycine cleavage system P-protein CV728_02225 PF01568 Molydopterin dinucleotide binding domain CV728_02225 PF18364 Molybdopterin oxidoreductase N-terminal domain CV728_02225 PF00384 Molybdopterin oxidoreductase CV728_02235 PF02540 NAD synthase CV728_02235 PF00958 GMP synthase C terminal domain CV728_02235 PF00117 Glutamine amidotransferase class-I CV728_02270 PF00924 Mechanosensitive ion channel CV728_02280 PF09334 tRNA synthetases class I (M) CV728_02280 PF01588 Putative tRNA binding domain CV728_02280 PF00133 tRNA synthetases class I (I, L, M and V) CV728_02290 PF08003 Protein of unknown function (DUF1698) CV728_02305 PF17810 Arginine decarboxylase helical bundle domain CV728_02305 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CV728_02305 PF17944 Arginine decarboxylase C-terminal helical extension CV728_02370 PF00924 Mechanosensitive ion channel CV728_02390 PF00091 Tubulin/FtsZ family, GTPase domain CV728_02390 PF12327 FtsZ family, C-terminal domain CV728_02395 PF02491 SHS2 domain inserted in FTSA CV728_02405 PF00202 Aminotransferase class-III CV728_02410 PF02686 Glu-tRNAGln amidotransferase C subunit CV728_02415 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CV728_02415 PF01676 Metalloenzyme superfamily CV728_02425 PF02092 Glycyl-tRNA synthetase beta subunit CV728_02440 PF00873 AcrB/AcrD/AcrF family CV728_02470 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CV728_02470 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CV728_02475 PF02091 Glycyl-tRNA synthetase alpha subunit CV728_02480 PF01784 NIF3 (NGG1p interacting factor 3) CV728_02490 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CV728_02490 PF00534 Glycosyl transferases group 1 CV728_02495 PF00849 RNA pseudouridylate synthase CV728_02500 PF01790 Prolipoprotein diacylglyceryl transferase CV728_02505 PF00881 Nitroreductase family CV728_02515 PF02464 Competence-damaged protein CV728_02515 PF00994 Probable molybdopterin binding domain CV728_02515 PF18146 Damage-inducible protein CinA KH domain CV728_02525 PF01039 Carboxyl transferase domain CV728_02525 PF17848 Acetyl-coA carboxylase zinc finger domain CV728_02530 PF02590 Predicted SPOUT methyltransferase CV728_02545 PF03553 Na+/H+ antiporter family CV728_02575 PF01042 Endoribonuclease L-PSP CV728_02580 PF01266 FAD dependent oxidoreductase CV728_02585 PF01235 Sodium:alanine symporter family CV728_02590 PF00842 Alanine racemase, C-terminal domain CV728_02590 PF01168 Alanine racemase, N-terminal domain CV728_02595 PF00497 Bacterial extracellular solute-binding proteins, family 3 CV728_02600 PF00528 Binding-protein-dependent transport system inner membrane component CV728_02635 PF01242 6-pyruvoyl tetrahydropterin synthase CV728_02645 PF01975 Survival protein SurE CV728_02650 PF00348 Polyprenyl synthetase CV728_02655 PF01227 GTP cyclohydrolase I CV728_02660 PF01435 Peptidase family M48 CV728_02665 PF01142 tRNA pseudouridine synthase D (TruD) CV728_02670 PF02132 RecR protein CV728_02675 PF01361 Tautomerase enzyme CV728_02685 PF03797 Autotransporter beta-domain CV728_02685 PF02691 Vacuolating cyotoxin CV728_02690 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CV728_02690 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CV728_02695 PF01027 Inhibitor of apoptosis-promoting Bax1 CV728_02700 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CV728_02700 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CV728_02700 PF02142 MGS-like domain CV728_02730 PF00580 UvrD/REP helicase N-terminal domain CV728_02730 PF13361 UvrD-like helicase C-terminal domain CV728_02735 PF07669 Eco57I restriction-modification methylase CV728_02735 PF02384 N-6 DNA Methylase CV728_02745 PF00460 Flagella basal body rod protein CV728_02745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CV728_02745 PF00460 Flagella basal body rod protein CV728_02745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CV728_02745 PF07559 Flagellar basal body protein FlaE CV728_02745 PF07559 Flagellar basal body protein FlaE CV728_02750 PF13860 FlgD Ig-like domain CV728_02750 PF03963 Flagellar hook capping protein - N-terminal region CV728_02750 PF13861 FlgD Tudor-like domain CV728_02780 PF02492 CobW/HypB/UreG, nucleotide-binding domain CV728_02785 PF01455 HupF/HypC family CV728_02790 PF01924 Hydrogenase formation hypA family CV728_02825 PF09827 CRISPR associated protein Cas2 CV728_02830 PF03061 Thioesterase superfamily CV728_02835 PF00106 short chain dehydrogenase CV728_02840 PF01032 FecCD transport family CV728_02845 PF00005 ABC transporter CV728_02850 PF02691 Vacuolating cyotoxin CV728_02855 PF01406 tRNA synthetases class I (C) catalytic domain CV728_02855 PF09190 DALR domain CV728_02860 PF03023 Lipid II flippase MurJ CV728_02870 PF07499 RuvA, C-terminal domain CV728_02870 PF01330 RuvA N terminal domain CV728_02895 PF00830 Ribosomal L28 family CV728_02905 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CV728_02905 PF00953 Glycosyl transferase family 4 CV728_02910 PF08245 Mur ligase middle domain CV728_02910 PF02875 Mur ligase family, glutamate ligase domain CV728_02915 PF04359 Protein of unknown function (DUF493) CV728_02920 PF03061 Thioesterase superfamily CV728_02925 PF00209 Sodium:neurotransmitter symporter family CV728_02930 PF00209 Sodium:neurotransmitter symporter family CV728_02940 PF00712 DNA polymerase III beta subunit, N-terminal domain CV728_02940 PF02767 DNA polymerase III beta subunit, central domain CV728_02940 PF02768 DNA polymerase III beta subunit, C-terminal domain CV728_02945 PF00986 DNA gyrase B subunit, carboxyl terminus CV728_02945 PF00204 DNA gyrase B CV728_02945 PF01751 Toprim domain CV728_02945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV728_02960 PF01464 Transglycosylase SLT domain CV728_02960 PF10145 Phage-related minor tail protein CV728_02960 PF01551 Peptidase family M23 CV728_02970 PF15436 Plasminogen-binding protein pgbA N-terminal CV728_02970 PF15437 Plasminogen-binding protein pgbA C-terminal CV728_02975 PF02913 FAD linked oxidases, C-terminal domain CV728_02975 PF01565 FAD binding domain CV728_02980 PF05173 Dihydrodipicolinate reductase, C-terminus CV728_02980 PF01113 Dihydrodipicolinate reductase, N-terminus CV728_03000 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CV728_03060 PF16707 Cag pathogenicity island protein S of Helicobacter pylori CV728_03065 PF13117 Cag pathogenicity island protein Cag12 CV728_03090 PF03743 Bacterial conjugation TrbI-like protein CV728_03100 PF00437 Type II/IV secretion system protein CV728_03105 PF02534 Type IV secretory system Conjugative DNA transfer CV728_03140 PF03951 Glutamine synthetase, beta-Grasp domain CV728_03140 PF00120 Glutamine synthetase, catalytic domain CV728_03150 PF01281 Ribosomal protein L9, N-terminal domain CV728_03150 PF03948 Ribosomal protein L9, C-terminal domain CV728_03155 PF00227 Proteasome subunit CV728_03160 PF10431 C-terminal, D2-small domain, of ClpB protein CV728_03160 PF07724 AAA domain (Cdc48 subfamily) CV728_03165 PF07650 KH domain CV728_03165 PF01926 50S ribosome-binding GTPase CV728_03215 PF03507 CagA exotoxin CV728_03230 PF01177 Asp/Glu/Hydantoin racemase CV728_03235 PF07497 Rho termination factor, RNA-binding domain CV728_03235 PF07498 Rho termination factor, N-terminal domain CV728_03235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CV728_03240 PF01197 Ribosomal protein L31 CV728_03245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CV728_03250 PF00588 SpoU rRNA Methylase family CV728_03250 PF08032 RNA 2'-O ribose methyltransferase substrate binding CV728_03275 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CV728_03280 PF02801 Beta-ketoacyl synthase, C-terminal domain CV728_03280 PF00109 Beta-ketoacyl synthase, N-terminal domain CV728_03285 PF00550 Phosphopantetheine attachment site CV728_03295 PF01165 Ribosomal protein S21 CV728_03310 PF04224 Protein of unknown function, DUF417 CV728_03315 PF01678 Diaminopimelate epimerase CV728_03320 PF01594 AI-2E family transporter CV728_03330 PF01926 50S ribosome-binding GTPase CV728_03330 PF06071 Protein of unknown function (DUF933) CV728_03335 PF02789 Cytosol aminopeptidase family, N-terminal domain CV728_03335 PF00883 Cytosol aminopeptidase family, catalytic domain CV728_03345 PF00156 Phosphoribosyl transferase domain CV728_03355 PF02502 Ribose/Galactose Isomerase CV728_03360 PF02163 Peptidase family M50 CV728_03365 PF10502 Signal peptidase, peptidase S26 CV728_03370 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CV728_03370 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CV728_03405 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CV728_03405 PF04509 CheC-like family CV728_03410 PF00730 HhH-GPD superfamily base excision DNA repair protein CV728_03410 PF00633 Helix-hairpin-helix motif CV728_03415 PF04023 FeoA domain CV728_03435 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CV728_03435 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CV728_03435 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CV728_03440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CV728_03475 PF00912 Transglycosylase CV728_03475 PF00905 Penicillin binding protein transpeptidase domain CV728_03480 PF00155 Aminotransferase class I and II CV728_03485 PF00672 HAMP domain CV728_03485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CV728_03485 PF12729 Four helix bundle sensory module for signal transduction CV728_03500 PF00669 Bacterial flagellin N-terminal helical region CV728_03500 PF07196 Flagellin hook IN motif CV728_03500 PF00700 Bacterial flagellin C-terminal helical region CV728_03515 PF01208 Uroporphyrinogen decarboxylase (URO-D) CV728_03530 PF00873 AcrB/AcrD/AcrF family CV728_03540 PF08502 LeuA allosteric (dimerisation) domain CV728_03540 PF00682 HMGL-like CV728_03550 PF00005 ABC transporter CV728_03560 PF01653 NAD-dependent DNA ligase adenylation domain CV728_03560 PF00533 BRCA1 C Terminus (BRCT) domain CV728_03560 PF03120 NAD-dependent DNA ligase OB-fold domain CV728_03565 PF00072 Response regulator receiver domain CV728_03570 PF00152 tRNA synthetases class II (D, K and N) CV728_03570 PF01336 OB-fold nucleic acid binding domain CV728_03570 PF02938 GAD domain CV728_03590 PF00719 Inorganic pyrophosphatase CV728_03595 PF00488 MutS domain V CV728_03595 PF01713 Smr domain CV728_03605 PF08245 Mur ligase middle domain CV728_03605 PF02875 Mur ligase family, glutamate ligase domain CV728_03605 PF01225 Mur ligase family, catalytic domain CV728_03610 PF00155 Aminotransferase class I and II CV728_03615 PF04551 GcpE protein CV728_03620 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CV728_03620 PF14602 Hexapeptide repeat of succinyl-transferase CV728_03635 PF02525 Flavodoxin-like fold CV728_03640 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CV728_03640 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CV728_03640 PF10518 TAT (twin-arginine translocation) pathway signal sequence CV728_03645 PF00374 Nickel-dependent hydrogenase CV728_03650 PF01292 Prokaryotic cytochrome b561 CV728_03655 PF01750 Hydrogenase maturation protease CV728_03680 PF06508 Queuosine biosynthesis protein QueC CV728_03690 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CV728_03690 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CV728_03695 PF00881 Nitroreductase family CV728_03700 PF00749 tRNA synthetases class I (E and Q), catalytic domain CV728_03705 PF02325 YGGT family CV728_03710 PF01464 Transglycosylase SLT domain CV728_03710 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CV728_03715 PF00483 Nucleotidyl transferase CV728_03725 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CV728_03730 PF10415 Fumarase C C-terminus CV728_03730 PF00206 Lyase CV728_03740 PF18025 Alpha-(1,3)-fucosyltransferase FucT N-terminal domain CV728_03740 PF00852 Glycosyltransferase family 10 (fucosyltransferase) C-term CV728_03750 PF00210 Ferritin-like domain CV728_03755 PF04055 Radical SAM superfamily CV728_03760 PF01103 Surface antigen CV728_03760 PF07244 Surface antigen variable number repeat CV728_03765 PF04055 Radical SAM superfamily CV728_03775 PF02637 GatB domain CV728_03775 PF02934 GatB/GatE catalytic domain CV728_03790 PF00075 RNase H CV728_03795 PF14622 Ribonuclease-III-like CV728_03795 PF00035 Double-stranded RNA binding motif CV728_03800 PF01264 Chorismate synthase CV728_03805 PF10788 Protein of unknown function (DUF2603) CV728_03810 PF04055 Radical SAM superfamily CV728_03810 PF06969 HemN C-terminal domain CV728_03815 PF02754 Cysteine-rich domain CV728_03830 PF00155 Aminotransferase class I and II CV728_03840 PF18644 Phage integrase SAM-like domain CV728_03840 PF00589 Phage integrase family CV728_03845 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CV728_03845 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CV728_03850 PF01925 Sulfite exporter TauE/SafE CV728_03855 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CV728_03855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CV728_03860 PF02867 Ribonucleotide reductase, barrel domain CV728_03860 PF03477 ATP cone domain CV728_03860 PF00317 Ribonucleotide reductase, all-alpha domain CV728_03875 PF12804 MobA-like NTP transferase domain CV728_03875 PF14602 Hexapeptide repeat of succinyl-transferase CV728_03885 PF00813 FliP family CV728_03895 PF07670 Nucleoside recognition CV728_03895 PF02421 Ferrous iron transport protein B CV728_03895 PF07664 Ferrous iron transport protein B C terminus CV728_03905 PF02803 Thiolase, C-terminal domain CV728_03905 PF00108 Thiolase, N-terminal domain CV728_03910 PF01144 Coenzyme A transferase CV728_03915 PF01144 Coenzyme A transferase CV728_03920 PF02667 Short chain fatty acid transporter CV728_03930 PF05378 Hydantoinase/oxoprolinase N-terminal region CV728_03930 PF01968 Hydantoinase/oxoprolinase CV728_03935 PF02538 Hydantoinase B/oxoprolinase CV728_03940 PF08882 Acetone carboxylase gamma subunit CV728_03950 PF01219 Prokaryotic diacylglycerol kinase CV728_03955 PF00521 DNA gyrase/topoisomerase IV, subunit A CV728_03955 PF03989 DNA gyrase C-terminal domain, beta-propeller CV728_03965 PF02954 Bacterial regulatory protein, Fis family CV728_03965 PF00072 Response regulator receiver domain CV728_03965 PF00158 Sigma-54 interaction domain CV728_03980 PF00005 ABC transporter CV728_03980 PF17755 UvrA DNA-binding domain CV728_03980 PF17760 UvrA interaction domain CV728_03990 PF01795 MraW methylase family CV728_04000 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase CV728_04015 PF04552 Sigma-54, DNA binding domain CV728_04015 PF04963 Sigma-54 factor, core binding domain CV728_04015 PF00309 Sigma-54 factor, Activator interacting domain (AID) CV728_04020 PF12399 Branched-chain amino acid ATP-binding cassette transporter CV728_04020 PF00005 ABC transporter CV728_04035 PF12170 DNA polymerase III tau subunit V interacting with alpha CV728_04035 PF12169 DNA polymerase III subunits gamma and tau domain III CV728_04040 PF01810 LysE type translocator CV728_04060 PF00710 Asparaginase, N-terminal CV728_04060 PF17763 Glutaminase/Asparaginase C-terminal domain CV728_04065 PF03605 Anaerobic c4-dicarboxylate membrane transporter CV728_04080 PF01207 Dihydrouridine synthase (Dus) CV728_04085 PF01171 PP-loop family CV728_04125 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CV728_04130 PF01751 Toprim domain CV728_04130 PF01131 DNA topoisomerase CV728_04165 PF00437 Type II/IV secretion system protein CV728_04185 PF02534 Type IV secretory system Conjugative DNA transfer CV728_04195 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ CV728_04220 PF13614 AAA domain CV728_04260 PF07282 Putative transposase DNA-binding domain CV728_04260 PF01385 Probable transposase CV728_04260 PF12323 Helix-turn-helix domain CV728_04265 PF01797 Transposase IS200 like CV728_04280 PF00919 Uncharacterized protein family UPF0004 CV728_04280 PF04055 Radical SAM superfamily CV728_04285 PF00156 Phosphoribosyl transferase domain CV728_04290 PF00266 Aminotransferase class-V CV728_04295 PF04608 Phosphatidylglycerophosphatase A CV728_04300 PF01820 D-ala D-ala ligase N-terminus CV728_04300 PF07478 D-ala D-ala ligase C-terminus CV728_04310 PF08245 Mur ligase middle domain CV728_04310 PF02875 Mur ligase family, glutamate ligase domain CV728_04310 PF01225 Mur ligase family, catalytic domain CV728_04315 PF01230 HIT domain CV728_04320 PF14572 Phosphoribosyl synthetase-associated domain CV728_04320 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CV728_04330 PF01098 Cell cycle protein CV728_04340 PF01926 50S ribosome-binding GTPase CV728_04350 PF01479 S4 domain CV728_04350 PF00849 RNA pseudouridylate synthase CV728_04360 PF02390 Putative methyltransferase CV728_04365 PF00005 ABC transporter CV728_04390 PF02561 Flagellar protein FliS CV728_04400 PF00899 ThiF family CV728_04410 PF00795 Carbon-nitrogen hydrolase CV728_04415 PF03553 Na+/H+ antiporter family CV728_04415 PF13726 Na+-H+ antiporter family CV728_04420 PF01554 MatE CV728_04425 PF01966 HD domain CV728_04425 PF12072 Domain of unknown function (DUF3552) CV728_04425 PF00013 KH domain CV728_04440 PF00448 SRP54-type protein, GTPase domain CV728_04460 PF06463 Molybdenum Cofactor Synthesis C CV728_04460 PF04055 Radical SAM superfamily CV728_04465 PF12804 MobA-like NTP transferase domain CV728_04470 PF01312 FlhB HrpN YscU SpaS Family CV728_04480 PF01520 N-acetylmuramoyl-L-alanine amidase CV728_04490 PF01479 S4 domain CV728_04490 PF00579 tRNA synthetases class I (W and Y) CV728_04495 PF13291 ACT domain CV728_04495 PF04607 Region found in RelA / SpoT proteins CV728_04495 PF02824 TGS domain CV728_04500 PF01192 RNA polymerase Rpb6 CV728_04505 PF00696 Amino acid kinase family CV728_04545 PF03548 Outer membrane lipoprotein carrier protein LolA CV728_04550 PF07517 SecA DEAD-like domain CV728_04550 PF01043 SecA preprotein cross-linking domain CV728_04550 PF07516 SecA Wing and Scaffold domain CV728_04550 PF02810 SEC-C motif CV728_04580 PF00403 Heavy-metal-associated domain CV728_04585 PF13335 Magnesium chelatase, subunit ChlI C-terminal CV728_04585 PF01078 Magnesium chelatase, subunit ChlI CV728_04590 PF01327 Polypeptide deformylase CV728_04600 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CV728_04600 PF05697 Bacterial trigger factor protein (TF) CV728_04600 PF05698 Bacterial trigger factor protein (TF) C-terminus CV728_04610 PF05211 Neuraminyllactose-binding hemagglutinin precursor (NLBH) CV728_04615 PF01967 MoaC family CV728_04620 PF00994 Probable molybdopterin binding domain CV728_04625 PF02391 MoaE protein CV728_04635 PF00925 GTP cyclohydrolase II CV728_04645 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CV728_04645 PF00925 GTP cyclohydrolase II CV728_04665 PF01648 4'-phosphopantetheinyl transferase superfamily CV728_04670 PF03748 Flagellar basal body-associated protein FliL CV728_04690 PF00753 Metallo-beta-lactamase superfamily CV728_04695 PF00899 ThiF family CV728_04700 PF01618 MotA/TolQ/ExbB proton channel family CV728_04705 PF00691 OmpA family CV728_04705 PF13677 Membrane MotB of proton-channel complex MotA/MotB CV728_04715 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CV728_04720 PF00571 CBS domain CV728_04720 PF00005 ABC transporter CV728_04735 PF02151 UvrB/uvrC motif CV728_04735 PF01541 GIY-YIG catalytic domain CV728_04735 PF08459 UvrC Helix-hairpin-helix N-terminal CV728_04740 PF03447 Homoserine dehydrogenase, NAD binding domain CV728_04740 PF00742 Homoserine dehydrogenase CV728_04740 PF01842 ACT domain CV728_04745 PF02021 Uncharacterised protein family UPF0102 CV728_04750 PF00085 Thioredoxin CV728_04755 PF07992 Pyridine nucleotide-disulphide oxidoreductase CV728_04765 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CV728_04770 PF00119 ATP synthase A chain CV728_04775 PF00478 IMP dehydrogenase / GMP reductase domain CV728_04775 PF00571 CBS domain CV728_04780 PF01425 Amidase CV728_04785 PF01121 Dephospho-CoA kinase CV728_04790 PF17284 Spermidine synthase tetramerisation domain CV728_04800 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CV728_04800 PF01926 50S ribosome-binding GTPase CV728_04805 PF00216 Bacterial DNA-binding protein CV728_04830 PF02719 Polysaccharide biosynthesis protein CV728_04835 PF04127 DNA / pantothenate metabolism flavoprotein CV728_04835 PF02441 Flavoprotein CV728_04845 PF02581 Thiamine monophosphate synthase CV728_04850 PF08543 Phosphomethylpyrimidine kinase CV728_04855 PF02110 Hydroxyethylthiazole kinase family CV728_04860 PF18766 SWI2/SNF2 ATPase CV728_04860 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CV728_04860 PF12008 Type I restriction and modification enzyme - subunit R C terminal CV728_04865 PF01420 Type I restriction modification DNA specificity domain CV728_04880 PF01569 PAP2 superfamily CV728_04890 PF00005 ABC transporter CV728_04890 PF12848 ABC transporter CV728_04895 PF00478 IMP dehydrogenase / GMP reductase domain CV728_04900 PF13580 SIS domain CV728_04905 PF01467 Cytidylyltransferase-like CV728_04905 PF00294 pfkB family carbohydrate kinase CV728_04910 PF01370 NAD dependent epimerase/dehydratase family CV728_04925 PF03309 Type III pantothenate kinase CV728_04930 PF15437 Plasminogen-binding protein pgbA C-terminal CV728_04940 PF00692 dUTPase CV728_04945 PF03449 Transcription elongation factor, N-terminal CV728_04945 PF01272 Transcription elongation factor, GreA/GreB, C-term CV728_04950 PF02684 Lipid-A-disaccharide synthetase CV728_04960 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CV728_04965 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CV728_04965 PF07559 Flagellar basal body protein FlaE CV728_04965 PF07196 Flagellin hook IN motif CV728_04965 PF00460 Flagella basal body rod protein CV728_04970 PF02611 CDP-diacylglycerol pyrophosphatase CV728_04980 PF03831 PhnA domain CV728_04980 PF08274 PhnA Zinc-Ribbon CV728_04995 PF00199 Catalase CV728_04995 PF06628 Catalase-related immune-responsive CV728_05000 PF07715 TonB-dependent Receptor Plug Domain CV728_05000 PF00593 TonB dependent receptor CV728_05005 PF02075 Crossover junction endodeoxyribonuclease RuvC CV728_05065 PF00145 C-5 cytosine-specific DNA methylase CV728_05095 PF08402 TOBE domain CV728_05095 PF00005 ABC transporter CV728_05100 PF00528 Binding-protein-dependent transport system inner membrane component CV728_05115 PF00999 Sodium/hydrogen exchanger family CV728_05115 PF02254 TrkA-N domain CV728_05155 PF12161 HsdM N-terminal domain CV728_05155 PF02384 N-6 DNA Methylase CV728_05170 PF13090 Polyphosphate kinase C-terminal domain 2 CV728_05170 PF02503 Polyphosphate kinase middle domain CV728_05170 PF17941 Polyphosphate kinase C-terminal domain 1 CV728_05170 PF13089 Polyphosphate kinase N-terminal domain CV728_05175 PF01180 Dihydroorotate dehydrogenase CV728_05185 PF00701 Dihydrodipicolinate synthetase family CV728_05200 PF01066 CDP-alcohol phosphatidyltransferase CV728_05205 PF00324 Amino acid permease CV728_05210 PF17820 PDZ domain CV728_05210 PF13180 PDZ domain CV728_05215 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CV728_05215 PF02542 YgbB family CV728_05220 PF00486 Transcriptional regulatory protein, C terminal CV728_05220 PF00072 Response regulator receiver domain CV728_05225 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CV728_05225 PF01367 5'-3' exonuclease, C-terminal SAM fold CV728_05225 PF01612 3'-5' exonuclease CV728_05225 PF00476 DNA polymerase family A CV728_05235 PF00226 DnaJ domain CV728_05235 PF01556 DnaJ C terminal domain CV728_05240 PF13411 MerR HTH family regulatory protein CV728_05245 PF12002 MgsA AAA+ ATPase C terminal CV728_05245 PF01661 Macro domain CV728_05245 PF16193 AAA C-terminal domain CV728_05245 PF05496 Holliday junction DNA helicase RuvB P-loop domain CV728_05250 PF01475 Ferric uptake regulator family CV728_05265 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CV728_05265 PF04509 CheC-like family CV728_05270 PF02154 Flagellar motor switch protein FliM CV728_05270 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CV728_05275 PF04542 Sigma-70 region 2 CV728_05275 PF04539 Sigma-70 region 3 CV728_05275 PF04545 Sigma-70, region 4 CV728_05285 PF10609 NUBPL iron-transfer P-loop NTPase CV728_05290 PF00448 SRP54-type protein, GTPase domain CV728_05295 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CV728_05300 PF01321 Creatinase/Prolidase N-terminal domain CV728_05300 PF00557 Metallopeptidase family M24 CV728_05305 PF01220 Dehydroquinase class II CV728_05315 PF00312 Ribosomal protein S15 CV728_05320 PF00771 FHIPEP family CV728_05330 PF00486 Transcriptional regulatory protein, C terminal CV728_05330 PF00072 Response regulator receiver domain CV728_05335 PF00149 Calcineurin-like phosphoesterase CV728_05340 PF00501 AMP-binding enzyme CV728_05340 PF13193 AMP-binding enzyme C-terminal domain CV728_05340 PF16177 Acetyl-coenzyme A synthetase N-terminus CV728_05345 PF17384 RimP C-terminal SH3 domain CV728_05345 PF02576 RimP N-terminal domain CV728_05350 PF02033 Ribosome-binding factor A CV728_05355 PF11987 Translation-initiation factor 2 CV728_05355 PF00009 Elongation factor Tu GTP binding domain CV728_05355 PF04760 Translation initiation factor IF-2, N-terminal region CV728_05365 PF00288 GHMP kinases N terminal domain CV728_05375 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CV728_05380 PF03775 Septum formation inhibitor MinC, C-terminal domain CV728_05405 PF02548 Ketopantoate hydroxymethyltransferase CV728_05410 PF05496 Holliday junction DNA helicase RuvB P-loop domain CV728_05410 PF05491 RuvB C-terminal winged helix domain CV728_05410 PF17864 RuvB AAA lid domain CV728_05420 PF00902 Sec-independent protein translocase protein (TatC) CV728_05425 PF02547 Queuosine biosynthesis protein CV728_05430 PF02527 rRNA small subunit methyltransferase G CV728_05465 PF00004 ATPase family associated with various cellular activities (AAA) CV728_05465 PF17862 AAA+ lid domain CV728_05465 PF01434 Peptidase family M41 CV728_05475 PF01066 CDP-alcohol phosphatidyltransferase CV728_05480 PF00403 Heavy-metal-associated domain CV728_05485 PF00403 Heavy-metal-associated domain CV728_05505 PF03824 High-affinity nickel-transport protein CV728_05530 PF00005 ABC transporter CV728_05530 PF00664 ABC transporter transmembrane region CV728_05540 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CV728_05540 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CV728_05550 PF01728 FtsJ-like methyltransferase CV728_05550 PF01479 S4 domain CV728_05555 PF01687 Riboflavin kinase CV728_05555 PF06574 FAD synthetase CV728_05560 PF02779 Transketolase, pyrimidine binding domain CV728_05560 PF02780 Transketolase, C-terminal domain CV728_05560 PF00456 Transketolase, thiamine diphosphate binding domain CV728_05575 PF00083 Sugar (and other) transporter CV728_05580 PF00460 Flagella basal body rod protein CV728_05580 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CV728_05615 PF00009 Elongation factor Tu GTP binding domain CV728_05615 PF03144 Elongation factor Tu domain 2 CV728_05615 PF06421 GTP-binding protein LepA C-terminus CV728_05615 PF00679 Elongation factor G C-terminus CV728_05620 PF02779 Transketolase, pyrimidine binding domain CV728_05620 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CV728_05620 PF02780 Transketolase, C-terminal domain CV728_05630 PF14841 FliG middle domain CV728_05630 PF01706 FliG C-terminal domain CV728_05630 PF14842 FliG N-terminal domain CV728_05635 PF01514 Secretory protein of YscJ/FliF family CV728_05635 PF08345 Flagellar M-ring protein C-terminal CV728_05645 PF06418 CTP synthase N-terminus CV728_05645 PF00117 Glutamine amidotransferase class-I CV728_05650 PF02272 DHHA1 domain CV728_05650 PF17768 RecJ OB domain CV728_05650 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CV728_05650 PF01368 DHH family CV728_05655 PF00849 RNA pseudouridylate synthase CV728_05700 PF08238 Sel1 repeat CV728_05705 PF03652 Holliday junction resolvase CV728_05710 PF02481 DNA recombination-mediator protein A CV728_05710 PF17782 DprA winged helix domain CV728_05715 PF03776 Septum formation topological specificity factor MinE CV728_05720 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CV728_05725 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CV728_05725 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CV728_05735 PF02540 NAD synthase CV728_05740 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CV728_05755 PF02107 Flagellar L-ring protein CV728_05775 PF00625 Guanylate kinase CV728_05780 PF02416 mttA/Hcf106 family CV728_05790 PF01243 Pyridoxamine 5'-phosphate oxidase CV728_05790 PF10615 Protein of unknown function (DUF2470) CV728_05810 PF09827 CRISPR associated protein Cas2 CV728_05830 PF01522 Polysaccharide deacetylase CV728_05835 PF00795 Carbon-nitrogen hydrolase CV728_05850 PF00202 Aminotransferase class-III CV728_05865 PF01018 GTP1/OBG CV728_05865 PF01926 50S ribosome-binding GTPase CV728_05870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CV728_05870 PF00005 ABC transporter CV728_05875 PF00005 ABC transporter CV728_05875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CV728_05880 PF12911 N-terminal TM domain of oligopeptide transport permease C CV728_05880 PF00528 Binding-protein-dependent transport system inner membrane component CV728_05885 PF00528 Binding-protein-dependent transport system inner membrane component CV728_05890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CV728_05895 PF01016 Ribosomal L27 protein CV728_05900 PF00829 Ribosomal prokaryotic L21 protein CV728_05910 PF00795 Carbon-nitrogen hydrolase CV728_05915 PF04715 Anthranilate synthase component I, N terminal region CV728_05915 PF00425 chorismate binding enzyme CV728_05930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CV728_05930 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CV728_05950 PF17862 AAA+ lid domain CV728_05950 PF01434 Peptidase family M41 CV728_05950 PF00004 ATPase family associated with various cellular activities (AAA) CV728_05955 PF00919 Uncharacterized protein family UPF0004 CV728_05955 PF04055 Radical SAM superfamily CV728_05965 PF01761 3-dehydroquinate synthase CV728_05975 PF01702 Queuine tRNA-ribosyltransferase CV728_05985 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CV728_05990 PF02541 Ppx/GppA phosphatase family CV728_06000 PF00218 Indole-3-glycerol phosphate synthase CV728_06010 PF03692 Putative zinc- or iron-chelating domain CV728_06035 PF04055 Radical SAM superfamily CV728_06035 PF00919 Uncharacterized protein family UPF0004 CV728_06045 PF01979 Amidohydrolase family CV728_06050 PF01979 Amidohydrolase family CV728_06055 PF02683 Cytochrome C biogenesis protein transmembrane region CV728_06060 PF07724 AAA domain (Cdc48 subfamily) CV728_06060 PF02861 Clp amino terminal domain, pathogenicity island component CV728_06060 PF17871 AAA lid domain CV728_06060 PF10431 C-terminal, D2-small domain, of ClpB protein CV728_06060 PF00004 ATPase family associated with various cellular activities (AAA) CV728_06065 PF01555 DNA methylase CV728_06070 PF18643 BsaWI restriction endonuclease type 2 CV728_06075 PF18643 BsaWI restriction endonuclease type 2 CV728_06085 PF01555 DNA methylase CV728_06085 PF18273 Type III R-M EcoP15I C-terminal domain CV728_06090 PF02601 Exonuclease VII, large subunit CV728_06090 PF13742 OB-fold nucleic acid binding domain CV728_06095 PF02163 Peptidase family M50 CV728_06110 PF00709 Adenylosuccinate synthetase CV728_06135 PF00005 ABC transporter CV728_06135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CV728_06150 PF00271 Helicase conserved C-terminal domain CV728_06150 PF00270 DEAD/DEAH box helicase CV728_06155 PF02119 Flagellar P-ring protein CV728_06165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV728_06165 PF00512 His Kinase A (phospho-acceptor) domain CV728_06170 PF00210 Ferritin-like domain CV728_06185 PF00348 Polyprenyl synthetase CV728_06190 PF01488 Shikimate / quinate 5-dehydrogenase CV728_06190 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CV728_06190 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CV728_06195 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CV728_06195 PF03129 Anticodon binding domain CV728_06195 PF04073 Aminoacyl-tRNA editing domain CV728_06200 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CV728_06200 PF03900 Porphobilinogen deaminase, C-terminal domain CV728_06210 PF08238 Sel1 repeat CV728_06210 PF13181 Tetratricopeptide repeat CV728_06210 PF13176 Tetratricopeptide repeat CV728_06220 PF03738 Glutathionylspermidine synthase preATP-grasp CV728_06235 PF02348 Cytidylyltransferase CV728_06250 PF01740 STAS domain CV728_06250 PF00916 Sulfate permease family CV728_06265 PF01925 Sulfite exporter TauE/SafE CV728_06270 PF01625 Peptide methionine sulfoxide reductase CV728_06270 PF01641 SelR domain CV728_06275 PF18073 Rubredoxin metal binding domain CV728_06285 PF01592 NifU-like N terminal domain CV728_06285 PF04324 BFD-like [2Fe-2S] binding domain CV728_06285 PF01106 NifU-like domain CV728_06290 PF00266 Aminotransferase class-V CV728_06305 PF01161 Phosphatidylethanolamine-binding protein CV728_06320 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CV728_06320 PF13288 DXP reductoisomerase C-terminal domain CV728_06320 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CV728_06330 PF00939 Sodium:sulfate symporter transmembrane region CV728_06335 PF01134 Glucose inhibited division protein A CV728_06335 PF13932 GidA associated domain CV728_06340 PF07687 Peptidase dimerisation domain CV728_06340 PF01546 Peptidase family M20/M25/M40 CV728_06345 PF08238 Sel1 repeat CV728_06345 PF13181 Tetratricopeptide repeat CV728_06360 PF00589 Phage integrase family CV728_06360 PF02899 Phage integrase, N-terminal SAM-like domain CV728_06365 PF12728 Helix-turn-helix domain CV728_06365 PF02661 Fic/DOC family CV728_06415 PF13614 AAA domain CV728_06425 PF01131 DNA topoisomerase CV728_06425 PF01751 Toprim domain CV728_06425 PF13368 Topoisomerase C-terminal repeat CV728_06450 PF00437 Type II/IV secretion system protein CV728_06470 PF03743 Bacterial conjugation TrbI-like protein CV728_06490 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CV728_06540 PF10609 NUBPL iron-transfer P-loop NTPase CV728_06540 PF01883 Iron-sulfur cluster assembly protein CV728_06560 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CV728_06560 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CV728_06565 PF02504 Fatty acid synthesis protein CV728_06570 PF01783 Ribosomal L32p protein family CV728_06580 PF00334 Nucleoside diphosphate kinase CV728_06585 PF00438 S-adenosylmethionine synthetase, N-terminal domain CV728_06585 PF02772 S-adenosylmethionine synthetase, central domain CV728_06585 PF02773 S-adenosylmethionine synthetase, C-terminal domain CV728_06595 PF14659 Phage integrase, N-terminal SAM-like domain CV728_06595 PF00589 Phage integrase family CV728_06610 PF12323 Helix-turn-helix domain CV728_06610 PF07282 Putative transposase DNA-binding domain CV728_06610 PF01385 Probable transposase CV728_06615 PF01797 Transposase IS200 like CV728_06635 PF00132 Bacterial transferase hexapeptide (six repeats) CV728_06635 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CV728_06645 PF00121 Triosephosphate isomerase CV728_06650 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CV728_06655 PF02910 Fumarate reductase flavoprotein C-term CV728_06655 PF00890 FAD binding domain CV728_06660 PF13085 2Fe-2S iron-sulfur cluster binding domain CV728_06660 PF13183 4Fe-4S dicluster domain CV728_06665 PF13091 PLD-like domain CV728_06670 PF03350 Uncharacterized protein family, UPF0114 CV728_06690 PF00464 Serine hydroxymethyltransferase CV728_06695 PF00152 tRNA synthetases class II (D, K and N) CV728_06695 PF01336 OB-fold nucleic acid binding domain CV728_06705 PF00795 Carbon-nitrogen hydrolase CV728_06710 PF00005 ABC transporter CV728_06715 PF08666 SAF domain CV728_06715 PF03102 NeuB family CV728_06720 PF08207 Elongation factor P (EF-P) KOW-like domain CV728_06720 PF09285 Elongation factor P, C-terminal CV728_06720 PF01132 Elongation factor P (EF-P) OB domain CV728_06725 PF01116 Fructose-bisphosphate aldolase class-II CV728_06730 PF00639 PPIC-type PPIASE domain CV728_06750 PF03453 MoeA N-terminal region (domain I and II) CV728_06750 PF00994 Probable molybdopterin binding domain CV728_06750 PF03454 MoeA C-terminal region (domain IV) CV728_06755 PF03462 PCRF domain CV728_06755 PF00472 RF-1 domain CV728_06780 PF00486 Transcriptional regulatory protein, C terminal CV728_06780 PF00072 Response regulator receiver domain CV728_06785 PF00672 HAMP domain CV728_06785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CV728_06785 PF00512 His Kinase A (phospho-acceptor) domain CV728_06790 PF00490 Delta-aminolevulinic acid dehydratase CV728_06795 PF01709 Transcriptional regulator CV728_06805 PF08238 Sel1 repeat CV728_06820 PF01202 Shikimate kinase CV728_06835 PF03952 Enolase, N-terminal domain CV728_06835 PF00113 Enolase, C-terminal TIM barrel domain CV728_06840 PF00154 recA bacterial DNA recombination protein CV728_06870 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CV728_06870 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CV728_06885 PF00115 Cytochrome C and Quinol oxidase polypeptide I CV728_06895 PF00633 Helix-hairpin-helix motif CV728_06895 PF00730 HhH-GPD superfamily base excision DNA repair protein CV728_06895 PF14815 NUDIX domain CV728_06905 PF02652 L-lactate permease CV728_06910 PF02652 L-lactate permease CV728_06915 PF02754 Cysteine-rich domain CV728_06920 PF02589 LUD domain CV728_06920 PF11870 Domain of unknown function (DUF3390) CV728_06920 PF13183 4Fe-4S dicluster domain CV728_06925 PF02589 LUD domain CV728_06930 PF00578 AhpC/TSA family CV728_06940 PF01474 Class-II DAHP synthetase family CV728_06945 PF03222 Tryptophan/tyrosine permease family CV728_06950 PF03313 Serine dehydratase alpha chain CV728_06950 PF03315 Serine dehydratase beta chain CV728_06975 PF00453 Ribosomal protein L20 CV728_06980 PF01632 Ribosomal protein L35 CV728_06985 PF00707 Translation initiation factor IF-3, C-terminal domain CV728_06985 PF05198 Translation initiation factor IF-3, N-terminal domain CV728_06990 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CV728_06990 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CV728_06990 PF03129 Anticodon binding domain CV728_07000 PF00391 PEP-utilising enzyme, mobile domain CV728_07000 PF02896 PEP-utilising enzyme, TIM barrel domain CV728_07000 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CV728_07015 PF04055 Radical SAM superfamily CV728_07020 PF01751 Toprim domain CV728_07020 PF01131 DNA topoisomerase CV728_07020 PF01396 Topoisomerase DNA binding C4 zinc finger CV728_07025 PF00669 Bacterial flagellin N-terminal helical region CV728_07025 PF07196 Flagellin hook IN motif CV728_07025 PF00700 Bacterial flagellin C-terminal helical region CV728_07050 PF01025 GrpE CV728_07055 PF00012 Hsp70 protein CV728_07065 PF00291 Pyridoxal-phosphate dependent enzyme CV728_07070 PF01053 Cys/Met metabolism PLP-dependent enzyme CV728_07075 PF02664 S-Ribosylhomocysteinase (LuxS) CV728_07080 PF02872 5'-nucleotidase, C-terminal domain CV728_07080 PF00149 Calcineurin-like phosphoesterase CV728_07085 PF17200 Single Cache domain 2 CV728_07085 PF00672 HAMP domain CV728_07085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CV728_07090 PF00535 Glycosyl transferase family 2 CV728_07100 PF02677 Epoxyqueuosine reductase QueH CV728_07105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CV728_07105 PF16591 Helical bimodular sensor domain CV728_07105 PF00672 HAMP domain CV728_07110 PF00291 Pyridoxal-phosphate dependent enzyme CV728_07120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CV728_07120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CV728_07135 PF01531 Glycosyl transferase family 11 CV728_07140 PF01555 DNA methylase CV728_07155 PF00698 Acyl transferase domain CV728_07160 PF01048 Phosphorylase superfamily CV728_07165 PF04542 Sigma-70 region 2 CV728_07165 PF04545 Sigma-70, region 4 CV728_07165 PF04539 Sigma-70 region 3 CV728_07165 PF00140 Sigma-70 factor, region 1.2 CV728_07175 PF06039 Malate:quinone oxidoreductase (Mqo) CV728_07180 PF17402 Family of unknown function (DUF5408) CV728_07185 PF00572 Ribosomal protein L13 CV728_07190 PF00380 Ribosomal protein S9/S16 CV728_07195 PF17200 Single Cache domain 2 CV728_07195 PF00672 HAMP domain CV728_07195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CV728_07220 PF00472 RF-1 domain CV728_07220 PF03462 PCRF domain CV728_07225 PF01649 Ribosomal protein S20 CV728_07230 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CV728_07230 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CV728_07230 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CV728_07230 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CV728_07235 PF01252 Signal peptidase (SPase) II CV728_07245 PF00699 Urease beta subunit CV728_07245 PF00547 Urease, gamma subunit CV728_07250 PF01979 Amidohydrolase family CV728_07250 PF00449 Urease alpha-subunit, N-terminal domain CV728_07255 PF02293 AmiS/UreI family transporter CV728_07260 PF02814 UreE urease accessory protein, N-terminal domain CV728_07260 PF05194 UreE urease accessory protein, C-terminal domain CV728_07265 PF01730 UreF CV728_07270 PF02492 CobW/HypB/UreG, nucleotide-binding domain CV728_07275 PF01774 UreD urease accessory protein CV728_07320 PF00486 Transcriptional regulatory protein, C terminal CV728_07320 PF00072 Response regulator receiver domain CV728_07330 PF01256 Carbohydrate kinase CV728_07330 PF03853 YjeF-related protein N-terminus CV728_07335 PF00772 DnaB-like helicase N terminal domain CV728_07335 PF03796 DnaB-like helicase C terminal domain CV728_07345 PF01040 UbiA prenyltransferase family CV728_07360 PF02666 Phosphatidylserine decarboxylase CV728_07365 PF02445 Quinolinate synthetase A protein CV728_07370 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CV728_07370 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CV728_07380 PF04371 Porphyromonas-type peptidyl-arginine deiminase CV728_07385 PF01555 DNA methylase CV728_07390 PF00145 C-5 cytosine-specific DNA methylase CV728_07390 PF01381 Helix-turn-helix CV728_07405 PF01555 DNA methylase CV728_07420 PF00474 Sodium:solute symporter family CV728_07425 PF00171 Aldehyde dehydrogenase family CV728_07425 PF01619 Proline dehydrogenase CV728_07425 PF14850 DNA-binding domain of Proline dehydrogenase CV728_07425 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CV728_07470 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system CV728_07490 PF01555 DNA methylase CV728_07495 PF01555 DNA methylase CV728_07515 PF07724 AAA domain (Cdc48 subfamily) CV728_07515 PF10431 C-terminal, D2-small domain, of ClpB protein CV728_07520 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CV728_07520 PF00132 Bacterial transferase hexapeptide (six repeats) CV728_07525 PF07977 FabA-like domain CV728_07535 PF02623 FliW protein CV728_07540 PF13525 Outer membrane lipoprotein CV728_07545 PF05362 Lon protease (S16) C-terminal proteolytic domain CV728_07545 PF02190 ATP-dependent protease La (LON) substrate-binding domain CV728_07545 PF00004 ATPase family associated with various cellular activities (AAA) CV728_07550 PF01842 ACT domain CV728_07550 PF02153 Prephenate dehydrogenase CV728_07565 PF01555 DNA methylase CV728_07570 PF04851 Type III restriction enzyme, res subunit CV728_07575 PF06968 Biotin and Thiamin Synthesis associated domain CV728_07575 PF04055 Radical SAM superfamily CV728_07580 PF03631 Virulence factor BrkB CV728_07625 PF14489 QueF-like protein CV728_07645 PF13651 Adenine-specific methyltransferase EcoRI CV728_07650 PF01555 DNA methylase CV728_07655 PF04371 Porphyromonas-type peptidyl-arginine deiminase CV728_07660 PF07503 HypF finger CV728_07660 PF01300 Telomere recombination CV728_07660 PF17788 HypF Kae1-like domain CV728_07660 PF00708 Acylphosphatase CV728_07665 PF00586 AIR synthase related protein, N-terminal domain CV728_07665 PF02769 AIR synthase related protein, C-terminal domain CV728_07670 PF01370 NAD dependent epimerase/dehydratase family CV728_07675 PF16363 GDP-mannose 4,6 dehydratase CV728_07680 PF01050 Mannose-6-phosphate isomerase CV728_07680 PF00483 Nucleotidyl transferase CV728_07715 PF02575 YbaB/EbfC DNA-binding family CV728_07720 PF02261 Aspartate decarboxylase CV728_07725 PF02861 Clp amino terminal domain, pathogenicity island component CV728_07725 PF10431 C-terminal, D2-small domain, of ClpB protein CV728_07725 PF07724 AAA domain (Cdc48 subfamily) CV728_07725 PF00004 ATPase family associated with various cellular activities (AAA) CV728_07725 PF17871 AAA lid domain CV728_07730 PF02617 ATP-dependent Clp protease adaptor protein ClpS CV728_07735 PF00582 Universal stress protein family CV728_07750 PF07509 Protein of unknown function (DUF1523) CV728_07755 PF00180 Isocitrate/isopropylmalate dehydrogenase CV728_07760 PF00285 Citrate synthase, C-terminal domain CV728_07785 PF00884 Sulfatase CV728_07785 PF08019 Phosphoethanolamine transferase EptA/EptB CV728_07790 PF01569 PAP2 superfamily CV728_07795 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CV728_07800 PF00072 Response regulator receiver domain CV728_07800 PF00486 Transcriptional regulatory protein, C terminal CV728_07840 PF08275 DNA primase catalytic core, N-terminal domain CV728_07840 PF01807 CHC2 zinc finger CV728_07840 PF16730 DnaG-primase C-terminal, helicase-binding domain CV728_07840 PF13662 Toprim domain CV728_07850 PF00166 Chaperonin 10 Kd subunit CV728_07855 PF00118 TCP-1/cpn60 chaperonin family CV728_07890 PF02569 Pantoate-beta-alanine ligase CV728_07895 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CV728_07900 PF00484 Carbonic anhydrase CV728_07905 PF00793 DAHP synthetase I family CV728_07910 PF00885 6,7-dimethyl-8-ribityllumazine synthase CV728_07915 PF01029 NusB family CV728_07925 PF03981 Ubiquinol-cytochrome C chaperone CV728_07925 PF13099 Domain of unknown function (DUF3944) CV728_07935 PF03981 Ubiquinol-cytochrome C chaperone CV728_07940 PF03981 Ubiquinol-cytochrome C chaperone CV728_07950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CV728_07950 PF00460 Flagella basal body rod protein CV728_07955 PF00814 Glycoprotease family CV728_07960 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CV728_07965 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CV728_07970 PF00953 Glycosyl transferase family 4 CV728_07975 PF01569 PAP2 superfamily CV728_07985 PF00528 Binding-protein-dependent transport system inner membrane component CV728_07990 PF09383 NIL domain CV728_07990 PF00005 ABC transporter CV728_08000 PF00677 Lumazine binding domain CV728_08005 PF01026 TatD related DNase CV728_08010 PF01476 LysM domain CV728_08010 PF01464 Transglycosylase SLT domain CV728_08015 PF05036 Sporulation related domain CV728_08015 PF03330 Lytic transglycolase CV728_08035 PF01926 50S ribosome-binding GTPase CV728_08045 PF00905 Penicillin binding protein transpeptidase domain CV728_08045 PF03717 Penicillin-binding Protein dimerisation domain CV728_08055 PF03180 NLPA lipoprotein CV728_08060 PF10417 C-terminal domain of 1-Cys peroxiredoxin CV728_08060 PF00578 AhpC/TSA family CV728_08075 PF01098 Cell cycle protein CV728_08080 PF00460 Flagella basal body rod protein CV728_08085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CV728_08085 PF00460 Flagella basal body rod protein CV728_08090 PF02049 Flagellar hook-basal body complex protein FliE CV728_08100 PF00905 Penicillin binding protein transpeptidase domain CV728_08100 PF03717 Penicillin-binding Protein dimerisation domain CV728_08105 PF00889 Elongation factor TS CV728_08110 PF00318 Ribosomal protein S2 CV728_08115 PF00580 UvrD/REP helicase N-terminal domain CV728_08115 PF13361 UvrD-like helicase C-terminal domain CV728_08115 PF12705 PD-(D/E)XK nuclease superfamily CV728_08120 PF06965 Na+/H+ antiporter 1 CV728_08125 PF02699 Preprotein translocase subunit CV728_08135 PF02355 Protein export membrane protein CV728_08135 PF07549 SecD/SecF GG Motif CV728_08145 PF13603 Leucyl-tRNA synthetase, Domain 2 CV728_08145 PF00133 tRNA synthetases class I (I, L, M and V) CV728_08145 PF09334 tRNA synthetases class I (M) CV728_08155 PF08245 Mur ligase middle domain CV728_08155 PF02875 Mur ligase family, glutamate ligase domain CV728_08165 PF01551 Peptidase family M23 CV728_08165 PF04225 Opacity-associated protein A LysM-like domain CV728_08175 PF00270 DEAD/DEAH box helicase CV728_08175 PF02559 CarD-like/TRCF domain CV728_08175 PF00271 Helicase conserved C-terminal domain CV728_08175 PF03461 TRCF domain CV728_08175 PF17757 UvrB interaction domain CV728_08180 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CV728_08180 PF00355 Rieske [2Fe-2S] domain CV728_08185 PF00033 Cytochrome b/b6/petB CV728_08185 PF00032 Cytochrome b(C-terminal)/b6/petD CV728_08210 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CV728_08215 PF00834 Ribulose-phosphate 3 epimerase family CV728_08220 PF02811 PHP domain CV728_08220 PF14579 Helix-hairpin-helix motif CV728_08220 PF00929 Exonuclease CV728_08220 PF07733 Bacterial DNA polymerase III alpha NTPase domain CV728_08220 PF11490 DNA polymerase III polC-type N-terminus II CV728_08220 PF14480 DNA polymerase III polC-type N-terminus I CV728_08220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CV728_08225 PF08238 Sel1 repeat CV728_08355 PF16730 DnaG-primase C-terminal, helicase-binding domain CV728_08355 PF01807 CHC2 zinc finger CV728_08355 PF13662 Toprim domain CV728_08355 PF08275 DNA primase catalytic core, N-terminal domain CV728_08410 PF02463 RecF/RecN/SMC N terminal domain CV728_08415 PF01513 ATP-NAD kinase CV728_08430 PF08240 Alcohol dehydrogenase GroES-like domain CV728_08430 PF00107 Zinc-binding dehydrogenase CV728_08435 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CV728_08435 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CV728_08440 PF00491 Arginase family CV728_08455 PF18766 SWI2/SNF2 ATPase CV728_08455 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CV728_08455 PF11867 Domain of unknown function (DUF3387) CV728_08460 PF02384 N-6 DNA Methylase CV728_08460 PF12161 HsdM N-terminal domain CV728_08475 PF02511 Thymidylate synthase complementing protein CV728_08480 PF01380 SIS domain CV728_08485 PF10398 Protein of unknown function (DUF2443)