locus-tag	class	description
Ilyop_0002	COG2501	S4 domain
Ilyop_0003	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
Ilyop_0006	COG0187	DNA topoisomerase II activity
Ilyop_0007	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
Ilyop_0011	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
Ilyop_0012	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ilyop_0012	COG0072	phenylalanine-tRNA ligase activity
Ilyop_0013	COG1649	PFAM Uncharacterised BCR, COG1649
Ilyop_0014	COG1760	l-serine dehydratase
Ilyop_0015	COG0193	aminoacyl-tRNA hydrolase activity
Ilyop_0016	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Ilyop_0017	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
Ilyop_0018	COG4656	Part of a membrane complex involved in electron transport
Ilyop_0019	COG4658	electron transport chain
Ilyop_0020	COG4659	FMN binding
Ilyop_0021	COG4660	Part of a membrane complex involved in electron transport
Ilyop_0022	COG4657	Part of a membrane complex involved in electron transport
Ilyop_0023	COG2878	Part of a membrane complex involved in electron transport
Ilyop_0023	COG1245	4Fe-4S binding domain
Ilyop_0028	COG1757	Na H antiporter
Ilyop_0029	COG0251	oxidation-reduction process
Ilyop_0031	COG2610	gluconate transmembrane transporter activity
Ilyop_0032	COG0564	pseudouridine synthase activity
Ilyop_0033	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
Ilyop_0034	COG0126	phosphoglycerate kinase activity
Ilyop_0035	COG0737	Belongs to the 5'-nucleotidase family
Ilyop_0038	COG0463	Glycosyl transferase, family 2
Ilyop_0040	COG1773	rubredoxin
Ilyop_0041	COG1773	rubredoxin
Ilyop_0042	COG1773	rubredoxin
Ilyop_0043	COG1592	Rubrerythrin
Ilyop_0047	COG0101	tRNA pseudouridine synthase activity
Ilyop_0048	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
Ilyop_0049	COG0390	transport system, permease component
Ilyop_0057	COG0583	DNA-binding transcription factor activity
Ilyop_0058	COG1028	Short-chain dehydrogenase reductase Sdr
Ilyop_0065	COG2356	endonuclease I
Ilyop_0066	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
Ilyop_0067	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
Ilyop_0071	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
Ilyop_0072	COG0786	glutamate:sodium symporter activity
Ilyop_0073	COG2721	sulfolactate sulfo-lyase activity
Ilyop_0074	COG2721	sulfolactate sulfo-lyase activity
Ilyop_0077	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
Ilyop_0078	COG2186	Transcriptional regulator
Ilyop_0079	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Ilyop_0081	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Ilyop_0082	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
Ilyop_0086	COG0674	pyruvate-flavodoxin oxidoreductase activity
Ilyop_0086	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
Ilyop_0087	COG1013	pyruvate-flavodoxin oxidoreductase activity
Ilyop_0090	COG3576	pyridoxamine 5-phosphate
Ilyop_0095	COG1733	regulation of RNA biosynthetic process
Ilyop_0097	COG0006	proline dipeptidase activity
Ilyop_0099	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
Ilyop_0100	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Ilyop_0102	COG1802	Transcriptional regulator
Ilyop_0104	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
Ilyop_0106	COG0674	pyruvate-flavodoxin oxidoreductase activity
Ilyop_0107	COG1013	pyruvate-flavodoxin oxidoreductase activity
Ilyop_0110	COG1609	Transcriptional regulator
Ilyop_0122	COG0251	oxidation-reduction process
Ilyop_0126	COG0402	S-adenosylhomocysteine deaminase activity
Ilyop_0127	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
Ilyop_0138	COG1744	ABC transporter substrate-binding protein PnrA-like
Ilyop_0141	COG1250	3-hydroxyacyl-CoA dehydrogenase
Ilyop_0142	COG3246	L-lysine catabolic process to acetate
Ilyop_0143	COG0583	DNA-binding transcription factor activity
Ilyop_0148	COG0859	PFAM glycosyl transferase family 9
Ilyop_0149	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
Ilyop_0150	COG2137	regulation of response to DNA damage stimulus
Ilyop_0151	COG0204	Acyl-transferase
Ilyop_0152	COG1882	Formate acetyltransferase
Ilyop_0153	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Ilyop_0154	COG0659	secondary active sulfate transmembrane transporter activity
Ilyop_0155	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
Ilyop_0162	COG1450	Type ii and iii secretion system protein
Ilyop_0166	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
Ilyop_0167	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Ilyop_0168	COG1595	DNA-templated transcription, initiation
Ilyop_0169	COG0495	leucyl-tRNA aminoacylation
Ilyop_0170	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
Ilyop_0171	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
Ilyop_0172	COG0267	Belongs to the bacterial ribosomal protein bL33 family
Ilyop_0174	COG0250	Participates in transcription elongation, termination and antitermination
Ilyop_0175	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
Ilyop_0176	COG0081	regulation of translation
Ilyop_0177	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
Ilyop_0178	COG0222	ribosome binding
Ilyop_0179	COG0085	RNA polymerase activity
Ilyop_0180	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Ilyop_0181	COG1561	YicC-like family, N-terminal region
Ilyop_0182	COG2052	Domain of unknown function (DUF370)
Ilyop_0183	COG0194	GDP metabolic process
Ilyop_0184	COG1758	RNA polymerase activity
Ilyop_0185	COG1477	protein flavinylation
Ilyop_0186	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
Ilyop_0187	COG0358	DNA primase activity
Ilyop_0188	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Ilyop_0189	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Ilyop_0190	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
Ilyop_0192	COG0335	large ribosomal subunit rRNA binding
Ilyop_0194	COG0681	Belongs to the peptidase S26 family
Ilyop_0196	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
Ilyop_0198	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Ilyop_0212	COG3706	GGDEF domain
Ilyop_0212	COG2203	Gaf domain
Ilyop_0212	COG4251	negative regulation of phosphorylation
Ilyop_0212	COG5001	Diguanylate cyclase
Ilyop_0213	COG0237	dephospho-CoA kinase activity
Ilyop_0214	COG0826	peptidase U32
Ilyop_0216	COG1546	Belongs to the CinA family
Ilyop_0216	COG1058	Belongs to the CinA family
Ilyop_0218	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
Ilyop_0219	COG1461	Dihydroxyacetone kinase
Ilyop_0220	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Ilyop_0221	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
Ilyop_0222	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
Ilyop_0222	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
Ilyop_0223	COG0482	sulfurtransferase activity
Ilyop_0224	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
Ilyop_0225	COG0473	3-isopropylmalate dehydrogenase activity
Ilyop_0226	COG0006	proline dipeptidase activity
Ilyop_0227	COG1802	Transcriptional regulator
Ilyop_0229	COG4106	trans-aconitate 2-methyltransferase activity
Ilyop_0230	COG1160	GTP binding
Ilyop_0231	COG1032	radical SAM domain protein
Ilyop_0239	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
Ilyop_0241	COG0653	protein targeting
Ilyop_0244	COG0613	PHP domain protein
Ilyop_0245	COG3613	nucleoside 2-deoxyribosyltransferase
Ilyop_0246	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Ilyop_0247	COG1968	undecaprenyl-diphosphatase activity
Ilyop_0250	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Ilyop_0252	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
Ilyop_0253	COG0179	Fumarylacetoacetate (FAA) hydrolase
Ilyop_0255	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Ilyop_0256	COG1840	ABC-type Fe3 transport system, periplasmic component
Ilyop_0258	COG3842	ATPase activity
Ilyop_0259	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Ilyop_0260	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
Ilyop_0261	COG1799	cell septum assembly
Ilyop_0262	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
Ilyop_0263	COG0482	sulfurtransferase activity
Ilyop_0266	COG0037	tRNA processing
Ilyop_0272	COG4670	ketone body catabolic process
Ilyop_0273	COG2610	gluconate transmembrane transporter activity
Ilyop_0274	COG1028	Short-chain dehydrogenase reductase Sdr
Ilyop_0276	COG1024	Enoyl-CoA hydratase
Ilyop_0277	COG2030	dehydratase
Ilyop_0278	COG1960	acyl-CoA dehydrogenase activity
Ilyop_0279	COG2086	electron transfer activity
Ilyop_0280	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
Ilyop_0282	COG0745	RESPONSE REGULATOR receiver
Ilyop_0287	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
Ilyop_0288	COG0569	domain protein
Ilyop_0288	COG2985	domain, Protein
Ilyop_0289	COG1802	Transcriptional regulator
Ilyop_0295	COG3052	prosthetic group binding
Ilyop_0297	COG3051	citrate lyase alpha subunit
Ilyop_0299	COG4770	biotin carboxylase activity
Ilyop_0300	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
Ilyop_0301	COG1966	Carbon starvation protein
Ilyop_0304	COG3248	Nucleoside-binding outer membrane protein
Ilyop_0305	COG0656	L-ascorbic acid biosynthetic process
Ilyop_0309	COG1918	ferrous iron import across plasma membrane
Ilyop_0309	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
Ilyop_0316	COG2828	Protein conserved in bacteria
Ilyop_0320	COG4191	Histidine kinase
Ilyop_0321	COG2197	response regulator
Ilyop_0326	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Ilyop_0327	COG1869	D-ribose catabolic process
Ilyop_0329	COG1172	Belongs to the binding-protein-dependent transport system permease family
Ilyop_0330	COG1879	ABC-type sugar transport system periplasmic component
Ilyop_0331	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
Ilyop_0332	COG4895	conserved protein (DUF2196)
Ilyop_0335	COG0765	amino acid transport
Ilyop_0336	COG1126	abc transporter atp-binding protein
Ilyop_0338	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Ilyop_0339	COG0165	Argininosuccinate lyase
Ilyop_0343	COG0084	hydrolase, TatD family'
Ilyop_0344	COG2226	methyltransferase
Ilyop_0345	COG0736	holo-[acyl-carrier-protein] synthase activity
Ilyop_0349	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
Ilyop_0350	COG0697	spore germination
Ilyop_0352	COG4565	transcriptional regulatory protein
Ilyop_0353	COG0604	alcohol dehydrogenase
Ilyop_0354	COG1716	ATPase activity
Ilyop_0354	COG5001	Diguanylate cyclase
Ilyop_0356	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Ilyop_0357	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
Ilyop_0360	COG1137	ATPase activity
Ilyop_0361	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
Ilyop_0362	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
Ilyop_0363	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Ilyop_0364	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Ilyop_0365	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
Ilyop_0366	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
Ilyop_0370	COG0612	Peptidase, M16
Ilyop_0371	COG0756	dUTP diphosphatase activity
Ilyop_0372	COG0772	Belongs to the SEDS family
Ilyop_0373	COG0564	pseudouridine synthase activity
Ilyop_0378	COG0489	protein tyrosine kinase activity
Ilyop_0378	COG3206	protein involved in exopolysaccharide biosynthesis
Ilyop_0379	COG0489	protein tyrosine kinase activity
Ilyop_0380	COG4464	protein tyrosine phosphatase activity
Ilyop_0385	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
Ilyop_0389	COG1216	Glycosyl transferase, family 2
Ilyop_0391	COG0438	transferase activity, transferring glycosyl groups
Ilyop_0393	COG1045	serine acetyltransferase
Ilyop_0394	COG1442	glycosyl transferase family 8
Ilyop_0394	COG1216	Glycosyl transferase, family 2
Ilyop_0401	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
Ilyop_0402	COG0825	malonyl-CoA metabolic process
Ilyop_0403	COG1454	alcohol dehydrogenase
Ilyop_0404	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Ilyop_0404	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Ilyop_0406	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
Ilyop_0407	COG0686	Belongs to the AlaDH PNT family
Ilyop_0410	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
Ilyop_0411	COG0632	four-way junction helicase activity
Ilyop_0412	COG0662	Cupin 2, conserved barrel domain protein
Ilyop_0412	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
Ilyop_0413	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
Ilyop_0415	COG0559	Belongs to the binding-protein-dependent transport system permease family
Ilyop_0417	COG0411	ABC transporter
Ilyop_0420	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
Ilyop_0421	COG0124	histidyl-tRNA synthetase
Ilyop_0422	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
Ilyop_0423	COG0018	arginyl-trna synthetase
Ilyop_0424	COG1660	Displays ATPase and GTPase activities
Ilyop_0425	COG0322	excinuclease ABC activity
Ilyop_0428	COG2208	phosphoserine phosphatase activity
Ilyop_0434	COG0765	amino acid transport
Ilyop_0435	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Ilyop_0436	COG0733	neurotransmitter:sodium symporter activity
Ilyop_0437	COG3872	metal-dependent enzyme
Ilyop_0438	COG3706	GGDEF domain
Ilyop_0440	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
Ilyop_0441	COG1489	DNA binding
Ilyop_0444	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
Ilyop_0447	COG2376	Dihydroxyacetone kinase
Ilyop_0448	COG2376	Dihydroxyacetone kinase
Ilyop_0453	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
Ilyop_0454	COG1027	Aspartate ammonia-lyase
Ilyop_0455	COG1160	GTP binding
Ilyop_0457	COG0640	Transcriptional regulator
Ilyop_0459	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Ilyop_0460	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
Ilyop_0461	COG4191	Histidine kinase
Ilyop_0463	COG1607	acyl-coa hydrolase
Ilyop_0464	COG1113	amino acid transport
Ilyop_0469	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Ilyop_0471	COG1454	alcohol dehydrogenase
Ilyop_0473	COG2188	Transcriptional regulator
Ilyop_0474	COG1486	melibiose metabolic process
Ilyop_0475	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Ilyop_0475	COG1263	PTS System
Ilyop_0476	COG1929	Belongs to the glycerate kinase type-1 family
Ilyop_0477	COG2190	(PTS) system
Ilyop_0478	COG1070	Carbohydrate kinase
Ilyop_0479	COG4294	response to UV
Ilyop_0485	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
Ilyop_0485	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
Ilyop_0486	COG3885	ferrous iron binding
Ilyop_0486	COG2078	PFAM AMMECR1 domain protein
Ilyop_0494	COG0741	lytic transglycosylase activity
Ilyop_0495	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
Ilyop_0496	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
Ilyop_0500	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
Ilyop_0501	COG3706	GGDEF domain
Ilyop_0505	COG2816	NAD+ diphosphatase activity
Ilyop_0506	COG2153	protein acetylation
Ilyop_0507	COG3040	lipid binding
Ilyop_0509	COG1136	(ABC) transporter
Ilyop_0510	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
Ilyop_0511	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
Ilyop_0512	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
Ilyop_0513	COG0588	phosphoglycerate mutase activity
Ilyop_0514	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
Ilyop_0515	COG2003	Belongs to the UPF0758 family
Ilyop_0516	COG1774	PSP1 C-terminal conserved region
Ilyop_0517	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
Ilyop_0519	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
Ilyop_0519	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
Ilyop_0520	COG0556	nucleotide-excision repair
Ilyop_0522	COG1570	exodeoxyribonuclease VII activity
Ilyop_0524	COG0758	DNA mediated transformation
Ilyop_0524	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
Ilyop_0525	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Ilyop_0526	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
Ilyop_0527	COG4974	Belongs to the 'phage' integrase family
Ilyop_0528	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
Ilyop_0529	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
Ilyop_0535	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
Ilyop_0536	COG4656	Part of a membrane complex involved in electron transport
Ilyop_0537	COG4658	electron transport chain
Ilyop_0540	COG0552	protein localization to endoplasmic reticulum
Ilyop_0541	COG0280	phosphate acetyltransferase
Ilyop_0542	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
Ilyop_0543	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Ilyop_0543	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
Ilyop_0543	COG1013	pyruvate-flavodoxin oxidoreductase activity
Ilyop_0543	COG0674	pyruvate-flavodoxin oxidoreductase activity
Ilyop_0546	COG2154	pterin-4-alpha-carbinolamine dehydratase
Ilyop_0548	COG3697	Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
Ilyop_0551	COG1301	dicarboxylic acid transport
Ilyop_0552	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Ilyop_0552	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Ilyop_0557	COG3052	prosthetic group binding
Ilyop_0561	COG1115	amino acid carrier protein
Ilyop_0565	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Ilyop_0567	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Ilyop_0568	COG0779	Required for maturation of 30S ribosomal subunits
Ilyop_0569	COG0195	Participates in both transcription termination and antitermination
Ilyop_0571	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
Ilyop_0572	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
Ilyop_0573	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
Ilyop_0573	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
Ilyop_0574	COG0544	peptidyl-prolyl cis-trans isomerase activity
Ilyop_0575	COG0740	serine-type endopeptidase activity
Ilyop_0576	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
Ilyop_0577	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Ilyop_0578	COG0218	Necessary for normal cell division and for the maintenance of normal septation
Ilyop_0579	COG0525	valine-tRNA ligase activity
Ilyop_0580	COG0583	DNA-binding transcription factor activity
Ilyop_0581	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
Ilyop_0584	COG0424	maF-like protein
Ilyop_0585	COG1077	Cell shape determining protein MreB Mrl
Ilyop_0588	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
Ilyop_0589	COG1187	pseudouridine synthase activity
Ilyop_0591	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
Ilyop_0592	COG0154	amidase activity
Ilyop_0593	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
Ilyop_0596	COG2195	Cleaves the N-terminal amino acid of tripeptides
Ilyop_0597	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
Ilyop_0598	COG1045	serine acetyltransferase
Ilyop_0601	COG2096	Adenosyltransferase
Ilyop_0603	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Ilyop_0604	COG0569	domain protein
Ilyop_0605	COG0445	tRNA wobble uridine modification
Ilyop_0606	COG0357	Ribosomal RNA small subunit methyltransferase G
Ilyop_0608	COG0729	surface antigen
Ilyop_0610	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Ilyop_0616	COG1451	nucleotide metabolic process
Ilyop_0618	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
Ilyop_0620	COG0191	fructose-bisphosphate aldolase activity
Ilyop_0622	COG0504	CTP synthase activity
Ilyop_0629	COG0745	RESPONSE REGULATOR receiver
Ilyop_0630	COG5002	protein histidine kinase activity
Ilyop_0632	COG1164	Oligoendopeptidase f
Ilyop_0637	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
Ilyop_0639	COG0616	signal peptide processing
Ilyop_0640	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
Ilyop_0641	COG0626	cystathionine gamma-synthase activity
Ilyop_0645	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Ilyop_0645	COG0493	'glutamate synthase
Ilyop_0647	COG3901	Regulator of nitric oxide reductase transcription
Ilyop_0647	COG0348	domain, Protein
Ilyop_0649	COG1733	regulation of RNA biosynthetic process
Ilyop_0651	COG1846	Transcriptional regulator
Ilyop_0653	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
Ilyop_0655	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ilyop_0655	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ilyop_0656	COG1210	Utp--glucose-1-phosphate uridylyltransferase
Ilyop_0657	COG3394	polysaccharide catabolic process
Ilyop_0659	COG2183	response to ionizing radiation
Ilyop_0661	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
Ilyop_0662	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
Ilyop_0663	COG0752	glycyl-tRNA synthetase alpha subunit
Ilyop_0664	COG0751	glycine-tRNA ligase activity
Ilyop_0665	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
Ilyop_0668	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
Ilyop_0671	COG0768	penicillin binding
Ilyop_0672	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
Ilyop_0673	COG0242	peptide deformylase activity
Ilyop_0674	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
Ilyop_0675	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
Ilyop_0676	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
Ilyop_0677	COG4492	Belongs to the UPF0735 family
Ilyop_0678	COG0511	ligase activity, forming carbon-carbon bonds
Ilyop_0680	COG1227	inorganic diphosphatase activity
Ilyop_0680	COG0517	IMP dehydrogenase activity
Ilyop_0681	COG1253	flavin adenine dinucleotide binding
Ilyop_0684	COG2816	NAD+ diphosphatase activity
Ilyop_0685	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Ilyop_0686	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
Ilyop_0687	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Ilyop_0688	COG0343	queuine tRNA-ribosyltransferase activity
Ilyop_0693	COG2267	carboxylic ester hydrolase activity
Ilyop_0694	COG0058	SHG alpha-glucan phosphorylase activity
Ilyop_0696	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
Ilyop_0698	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
Ilyop_0700	COG5002	protein histidine kinase activity
Ilyop_0701	COG0745	RESPONSE REGULATOR receiver
Ilyop_0702	COG2226	methyltransferase
Ilyop_0709	COG0531	amino acid
Ilyop_0720	COG0673	inositol 2-dehydrogenase activity
Ilyop_0721	COG4667	esterase of the alpha-beta hydrolase superfamily
Ilyop_0722	COG0402	S-adenosylhomocysteine deaminase activity
Ilyop_0725	COG3842	ATPase activity
Ilyop_0726	COG1177	transmembrane transport
Ilyop_0727	COG1176	ABC-type spermidine putrescine transport system, permease component I
Ilyop_0728	COG1609	Transcriptional regulator
Ilyop_0729	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
Ilyop_0730	COG0561	phosphatase activity
Ilyop_0732	COG0733	neurotransmitter:sodium symporter activity
Ilyop_0734	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
Ilyop_0736	COG3426	butyrate kinase activity
Ilyop_0737	COG0481	GTPase activity
Ilyop_0738	COG2081	HI0933 family
Ilyop_0739	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Ilyop_0739	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Ilyop_0739	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Ilyop_0740	COG1105	Belongs to the carbohydrate kinase PfkB family
Ilyop_0741	COG1349	DNA-binding transcription factor activity
Ilyop_0743	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
Ilyop_0744	COG1304	FMN binding
Ilyop_0747	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
Ilyop_0749	COG1482	cell wall glycoprotein biosynthetic process
Ilyop_0750	COG2188	Transcriptional regulator
Ilyop_0751	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Ilyop_0751	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Ilyop_0751	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Ilyop_0752	COG0383	alpha-mannosidase activity
Ilyop_0753	COG1929	Belongs to the glycerate kinase type-1 family
Ilyop_0756	COG1704	LemA family
Ilyop_0757	COG1295	ribonuclease BN
Ilyop_0759	COG1285	pathogenesis
Ilyop_0760	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Ilyop_0766	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Ilyop_0766	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
Ilyop_0770	COG0488	(ABC) transporter
Ilyop_0773	COG0697	spore germination
Ilyop_0774	COG1396	sequence-specific DNA binding
Ilyop_0777	COG0393	Putative heavy-metal-binding
Ilyop_0778	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
Ilyop_0783	COG0798	PFAM Bile acid sodium symporter
Ilyop_0784	COG0446	pyridine nucleotide-disulphide oxidoreductase
Ilyop_0788	COG3300	MHYT domain
Ilyop_0788	COG5001	Diguanylate cyclase
Ilyop_0789	COG5001	Diguanylate cyclase
Ilyop_0789	COG3300	MHYT domain
Ilyop_0790	COG5001	Diguanylate cyclase
Ilyop_0790	COG4251	negative regulation of phosphorylation
Ilyop_0790	COG2203	Gaf domain
Ilyop_0790	COG3706	GGDEF domain
Ilyop_0792	COG2814	Major facilitator Superfamily
Ilyop_0793	COG0288	reversible hydration of carbon dioxide
Ilyop_0794	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
Ilyop_0795	COG0820	rRNA (adenine-C2-)-methyltransferase activity
Ilyop_0797	COG4807	Protein conserved in bacteria
Ilyop_0801	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Ilyop_0802	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
Ilyop_0803	COG0438	transferase activity, transferring glycosyl groups
Ilyop_0804	COG1696	Membrane protein involved in D-alanine export
Ilyop_0806	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
Ilyop_0811	COG1216	Glycosyl transferase, family 2
Ilyop_0811	COG1442	glycosyl transferase family 8
Ilyop_0814	COG1442	glycosyl transferase family 8
Ilyop_0814	COG1216	Glycosyl transferase, family 2
Ilyop_0815	COG2072	flavoprotein involved in K transport
Ilyop_0817	COG2244	polysaccharide biosynthetic process
Ilyop_0818	COG0438	transferase activity, transferring glycosyl groups
Ilyop_0821	COG0489	protein tyrosine kinase activity
Ilyop_0827	COG3123	guanosine phosphorylase activity
Ilyop_0828	COG1737	Transcriptional regulator
Ilyop_0829	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Ilyop_0830	COG1028	Short-chain dehydrogenase reductase Sdr
Ilyop_0833	COG0631	protein serine/threonine phosphatase activity
Ilyop_0834	COG0024	Methionine aminopeptidase
Ilyop_0840	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
Ilyop_0841	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
Ilyop_0842	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
Ilyop_0843	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Ilyop_0843	COG0302	gtp cyclohydrolase
Ilyop_0844	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
Ilyop_0847	COG1799	cell septum assembly
Ilyop_0850	COG1461	Dihydroxyacetone kinase
Ilyop_0851	COG2376	Dihydroxyacetone kinase
Ilyop_0852	COG0584	glycerophosphoryl diester phosphodiesterase
Ilyop_0853	COG1278	Cold shock
Ilyop_0855	COG2195	Cleaves the N-terminal amino acid of tripeptides
Ilyop_0857	COG0561	phosphatase activity
Ilyop_0859	COG0629	single-stranded DNA binding
Ilyop_0863	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Ilyop_0863	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Ilyop_0865	COG0196	riboflavin kinase activity
Ilyop_0866	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
Ilyop_0867	COG0728	peptidoglycan biosynthetic process
Ilyop_0872	COG1136	(ABC) transporter
Ilyop_0872	COG0577	efflux transmembrane transporter activity
Ilyop_0875	COG1272	protein, Hemolysin III
Ilyop_0880	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
Ilyop_0886	COG0534	Mate efflux family protein
Ilyop_0887	COG0004	ammonium transporteR
Ilyop_0888	COG0347	Belongs to the P(II) protein family
Ilyop_0904	COG2251	uridine kinase activity
Ilyop_0907	COG0732	type I restriction modification DNA specificity domain
Ilyop_0911	COG0312	modulator of DNA gyrase
Ilyop_0912	COG0347	Belongs to the P(II) protein family
Ilyop_0913	COG0004	ammonium transporteR
Ilyop_0914	COG0347	Belongs to the P(II) protein family
Ilyop_0917	COG4221	oxidoreductase activity
Ilyop_0919	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Ilyop_0920	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Ilyop_0924	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Ilyop_0926	COG1659	Linocin_M18 bacteriocin protein
Ilyop_0929	COG1943	Transposase
Ilyop_0933	COG1187	pseudouridine synthase activity
Ilyop_0934	COG0739	heme binding
Ilyop_0938	COG1943	Transposase
Ilyop_0939	COG0778	Nitroreductase
Ilyop_0940	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
Ilyop_0942	COG0527	aspartate kinase activity
Ilyop_0948	COG1278	Cold shock
Ilyop_0951	COG2203	Gaf domain
Ilyop_0951	COG5001	Diguanylate cyclase
Ilyop_0951	COG4251	negative regulation of phosphorylation
Ilyop_0951	COG3706	GGDEF domain
Ilyop_0952	COG3152	Membrane
Ilyop_0953	COG5001	Diguanylate cyclase
Ilyop_0953	COG2203	Gaf domain
Ilyop_0953	COG4251	negative regulation of phosphorylation
Ilyop_0953	COG3706	GGDEF domain
Ilyop_0954	COG1242	4 iron, 4 sulfur cluster binding
Ilyop_0957	COG1733	regulation of RNA biosynthetic process
Ilyop_0960	COG0494	nUDIX hydrolase
Ilyop_0961	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Ilyop_0964	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
Ilyop_0966	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
Ilyop_0969	COG1979	alcohol dehydrogenase
Ilyop_0972	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
Ilyop_0974	COG4191	Histidine kinase
Ilyop_0975	COG0784	Response regulator, receiver
Ilyop_0976	COG1301	dicarboxylic acid transport
Ilyop_0978	COG1979	alcohol dehydrogenase
Ilyop_0981	COG3426	butyrate kinase activity
Ilyop_0984	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
Ilyop_0986	COG1620	l-lactate permease
Ilyop_0987	COG0277	FAD linked oxidase domain protein
Ilyop_0988	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
Ilyop_0989	COG2086	electron transfer activity
Ilyop_0990	COG2186	Transcriptional regulator
Ilyop_0994	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
Ilyop_0998	COG2885	chlorophyll binding
Ilyop_0999	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
Ilyop_1000	COG0205	6-phosphofructokinase activity
Ilyop_1003	COG0574	Belongs to the PEP-utilizing enzyme family
Ilyop_1003	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Ilyop_1005	COG0698	ribose 5-phosphate isomerase
Ilyop_1006	COG0537	adenosine 5'-monophosphoramidase activity
Ilyop_1008	COG2226	methyltransferase
Ilyop_1012	COG0494	nUDIX hydrolase
Ilyop_1055	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
Ilyop_1071	COG2062	phosphohistidine phosphatase, SixA
Ilyop_1073	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Ilyop_1075	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
Ilyop_1081	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
Ilyop_1082	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Ilyop_1082	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Ilyop_1082	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Ilyop_1084	COG1663	tetraacyldisaccharide 4'-kinase activity
Ilyop_1086	COG1196	nuclear chromosome segregation
Ilyop_1087	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
Ilyop_1088	COG2949	membrane
Ilyop_1089	COG3608	succinylglutamate desuccinylase aspartoacylase
Ilyop_1089	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
Ilyop_1090	COG0746	molybdenum cofactor guanylyltransferase activity
Ilyop_1091	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Ilyop_1091	COG2080	2 iron, 2 sulfur cluster binding
Ilyop_1098	COG0674	pyruvate-flavodoxin oxidoreductase activity
Ilyop_1098	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
Ilyop_1099	COG1013	pyruvate-flavodoxin oxidoreductase activity
Ilyop_1103	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Ilyop_1104	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
Ilyop_1106	COG0739	heme binding
Ilyop_1108	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
Ilyop_1109	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
Ilyop_1110	COG1132	(ABC) transporter
Ilyop_1111	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Ilyop_1113	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Ilyop_1114	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
Ilyop_1116	COG0210	DNA helicase
Ilyop_1117	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
Ilyop_1118	COG2239	Acts as a magnesium transporter
Ilyop_1121	COG1183	phosphatidylcholine synthase activity
Ilyop_1122	COG0038	chloride channel
Ilyop_1124	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
Ilyop_1125	COG3959	Transketolase, thiamine diphosphate binding domain
Ilyop_1126	COG0514	ATP-dependent DNA helicase (RecQ)
Ilyop_1131	COG1846	Transcriptional regulator
Ilyop_1132	COG1263	PTS System
Ilyop_1132	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Ilyop_1132	COG2190	(PTS) system
Ilyop_1133	COG2190	(PTS) system
Ilyop_1135	COG2190	(PTS) system
Ilyop_1137	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
Ilyop_1138	COG4145	pantothenate transmembrane transporter activity
Ilyop_1140	COG1846	Transcriptional regulator
Ilyop_1141	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
Ilyop_1142	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
Ilyop_1143	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
Ilyop_1144	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
Ilyop_1145	COG0583	DNA-binding transcription factor activity
Ilyop_1146	COG1794	racemase activity, acting on amino acids and derivatives
Ilyop_1147	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
Ilyop_1148	COG1584	GPR1 FUN34 yaaH family protein
Ilyop_1149	COG4336	lyase activity
Ilyop_1150	COG1914	H( )-stimulated, divalent metal cation uptake system
Ilyop_1151	COG1414	Transcriptional regulator
Ilyop_1153	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
Ilyop_1154	COG1984	allophanate hydrolase subunit 2
Ilyop_1156	COG1966	Carbon starvation protein
Ilyop_1157	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
Ilyop_1159	COG0028	Belongs to the TPP enzyme family
Ilyop_1160	COG0129	dihydroxy-acid dehydratase activity
Ilyop_1161	COG0473	3-isopropylmalate dehydrogenase activity
Ilyop_1162	COG0066	3-isopropylmalate dehydratase activity
Ilyop_1163	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
Ilyop_1169	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
Ilyop_1172	COG0384	phenazine biosynthesis protein PhzF
Ilyop_1175	COG2226	methyltransferase
Ilyop_1176	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
Ilyop_1177	COG0534	Mate efflux family protein
Ilyop_1181	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
Ilyop_1186	COG0352	thiamine-phosphate diphosphorylase activity
Ilyop_1187	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
Ilyop_1188	COG2894	cell division
Ilyop_1189	COG0850	regulation of cytokinetic process
Ilyop_1191	COG1757	Na H antiporter
Ilyop_1192	COG1464	Belongs to the NlpA lipoprotein family
Ilyop_1193	COG2011	ABC-type metal ion transport system permease component
Ilyop_1194	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
Ilyop_1196	COG0726	polysaccharide deacetylase
Ilyop_1197	COG3713	MltA-interacting MipA family protein
Ilyop_1200	COG1254	Belongs to the acylphosphatase family
Ilyop_1201	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
Ilyop_1201	COG0248	Ppx GppA phosphatase
Ilyop_1203	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
Ilyop_1204	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
Ilyop_1205	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
Ilyop_1210	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
Ilyop_1213	COG0519	Catalyzes the synthesis of GMP from XMP
Ilyop_1214	COG4221	oxidoreductase activity
Ilyop_1216	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
Ilyop_1217	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
Ilyop_1220	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
Ilyop_1224	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
Ilyop_1225	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Ilyop_1228	COG2853	Lipoprotein
Ilyop_1230	COG1454	alcohol dehydrogenase
Ilyop_1230	COG1012	belongs to the aldehyde dehydrogenase family
Ilyop_1231	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
Ilyop_1234	COG0326	Molecular chaperone. Has ATPase activity
Ilyop_1235	COG4166	transmembrane transport
Ilyop_1236	COG0601	transmembrane transport
Ilyop_1237	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Ilyop_1238	COG0444	Belongs to the ABC transporter superfamily
Ilyop_1239	COG4608	Belongs to the ABC transporter superfamily
Ilyop_1242	COG1136	(ABC) transporter
Ilyop_1242	COG0577	efflux transmembrane transporter activity
Ilyop_1243	COG1136	(ABC) transporter
Ilyop_1243	COG0577	efflux transmembrane transporter activity
Ilyop_1252	COG2342	PFAM TM1410 hypothetical-related protein
Ilyop_1254	COG0246	Mannitol dehydrogenase
Ilyop_1255	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
Ilyop_1257	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Ilyop_1257	COG3711	transcriptional antiterminator
Ilyop_1258	COG1752	Esterase of the alpha-beta hydrolase superfamily
Ilyop_1259	COG0617	tRNA 3'-terminal CCA addition
Ilyop_1262	COG0305	Participates in initiation and elongation during chromosome replication
Ilyop_1263	COG0359	binds to the 23S rRNA
Ilyop_1265	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
Ilyop_1266	COG2204	response regulator
Ilyop_1268	COG0848	biopolymer transport protein
Ilyop_1274	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Ilyop_1276	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
Ilyop_1277	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Ilyop_1279	COG0275	rRNA processing
Ilyop_1280	COG2200	EAL domain
Ilyop_1283	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Ilyop_1285	COG1185	polyribonucleotide nucleotidyltransferase activity
Ilyop_1288	COG0363	glucosamine-6-phosphate deaminase activity
Ilyop_1289	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Ilyop_1302	COG0303	'Molybdopterin
Ilyop_1303	COG0303	'Molybdopterin
Ilyop_1309	COG2414	aldehyde ferredoxin oxidoreductase
Ilyop_1311	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Ilyop_1312	COG0430	RNA-3'-phosphate cyclase activity
Ilyop_1313	COG1132	(ABC) transporter
Ilyop_1316	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
Ilyop_1317	COG1162	GTPase activity
Ilyop_1321	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
Ilyop_1323	COG0824	Thioesterase
Ilyop_1324	COG1837	Belongs to the UPF0109 family
Ilyop_1325	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
Ilyop_1326	COG0336	Belongs to the RNA methyltransferase TrmD family
Ilyop_1328	COG4752	Belongs to the RNA methyltransferase TrmD family
Ilyop_1331	COG1773	rubredoxin
Ilyop_1332	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
Ilyop_1333	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
Ilyop_1334	COG0037	tRNA processing
Ilyop_1335	COG2385	sporulation resulting in formation of a cellular spore
Ilyop_1336	COG1032	radical SAM domain protein
Ilyop_1337	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
Ilyop_1338	COG0513	Belongs to the DEAD box helicase family
Ilyop_1340	COG2233	PERMEase
Ilyop_1342	COG0622	Phosphoesterase
Ilyop_1344	COG1564	THIamine pyrophosphokinase
Ilyop_1347	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
Ilyop_1348	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
Ilyop_1349	COG1480	7TM receptor with intracellular HD hydrolase
Ilyop_1350	COG1199	ATP-dependent helicase activity
Ilyop_1351	COG0268	Binds directly to 16S ribosomal RNA
Ilyop_1354	COG2217	Heavy metal translocating P-type atpase
Ilyop_1356	COG1178	ABC-type Fe3 transport system permease component
Ilyop_1358	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
Ilyop_1361	COG1494	fructose-1,6-bisphosphatase
Ilyop_1364	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
Ilyop_1365	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Ilyop_1366	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Ilyop_1366	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Ilyop_1366	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Ilyop_1369	COG1792	Involved in formation and maintenance of cell shape
Ilyop_1372	COG0228	four-way junction DNA binding
Ilyop_1373	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
Ilyop_1374	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
Ilyop_1375	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
Ilyop_1376	COG0220	tRNA (guanine-N7-)-methyltransferase activity
Ilyop_1376	COG1519	Transferase
Ilyop_1377	COG1519	Transferase
Ilyop_1377	COG0220	tRNA (guanine-N7-)-methyltransferase activity
Ilyop_1379	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
Ilyop_1380	COG2264	protein methyltransferase activity
Ilyop_1381	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
Ilyop_1382	COG1692	metallophosphoesterase
Ilyop_1383	COG1418	mRNA catabolic process
Ilyop_1384	COG1366	Belongs to the anti-sigma-factor antagonist family
Ilyop_1387	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
Ilyop_1388	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
Ilyop_1389	COG0211	Belongs to the bacterial ribosomal protein bL27 family
Ilyop_1390	COG2868	ribosomal protein
Ilyop_1391	COG0261	This protein binds to 23S rRNA in the presence of protein L20
Ilyop_1393	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
Ilyop_1394	COG4149	molybdate abc transporter
Ilyop_1395	COG0725	ABC transporter, periplasmic molybdate-binding protein
Ilyop_1399	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Ilyop_1402	COG0535	radical SAM domain protein
Ilyop_1402	COG1433	Dinitrogenase iron-molybdenum cofactor
Ilyop_1408	COG0347	Belongs to the P(II) protein family
Ilyop_1409	COG0347	Belongs to the P(II) protein family
Ilyop_1410	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
Ilyop_1411	COG1214	PFAM Peptidase M22, glycoprotease
Ilyop_1412	COG0802	atpase or kinase
Ilyop_1413	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
Ilyop_1413	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
Ilyop_1415	COG0058	SHG alpha-glucan phosphorylase activity
Ilyop_1417	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
Ilyop_1418	COG0254	rRNA binding
Ilyop_1422	COG1739	Uncharacterized protein family UPF0029
Ilyop_1424	COG1994	Peptidase M50
Ilyop_1425	COG0658	competence protein
Ilyop_1426	COG0232	Belongs to the dGTPase family. Type 2 subfamily
Ilyop_1427	COG2211	Major facilitator Superfamily
Ilyop_1428	COG1323	Belongs to the UPF0348 family
Ilyop_1430	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
Ilyop_1434	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Ilyop_1435	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
Ilyop_1437	COG0617	tRNA 3'-terminal CCA addition
Ilyop_1439	COG1722	exodeoxyribonuclease VII activity
Ilyop_1440	COG0742	ribosomal rna small subunit methyltransferase
Ilyop_1441	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
Ilyop_1442	COG2890	protein-(glutamine-N5) methyltransferase activity
Ilyop_1443	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
Ilyop_1449	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
Ilyop_1453	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
Ilyop_1454	COG0530	calcium, potassium:sodium antiporter activity
Ilyop_1455	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Ilyop_1457	COG1059	Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine 7-oxoG) from DNA. Also nicks DNA at apurinic apyrimidinic sites (AP sites)
Ilyop_1458	COG0730	response to heat
Ilyop_1459	COG0295	cytidine deaminase activity
Ilyop_1463	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
Ilyop_1465	COG0156	8-amino-7-oxononanoate synthase activity
Ilyop_1466	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Ilyop_1470	COG0439	Biotin carboxylase
Ilyop_1475	COG0561	phosphatase activity
Ilyop_1476	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
Ilyop_1477	COG4974	Belongs to the 'phage' integrase family
Ilyop_1478	COG0497	DNA recombination
Ilyop_1479	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
Ilyop_1480	COG4942	peptidase
Ilyop_1482	COG1129	ABC transporter
Ilyop_1483	COG3958	Transketolase
Ilyop_1484	COG3959	Transketolase, thiamine diphosphate binding domain
Ilyop_1486	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
Ilyop_1487	COG0731	radical SAM domain protein
Ilyop_1487	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
Ilyop_1488	COG0391	Required for morphogenesis under gluconeogenic growth conditions
Ilyop_1490	COG0009	L-threonylcarbamoyladenylate synthase
Ilyop_1492	COG5002	protein histidine kinase activity
Ilyop_1493	COG0745	RESPONSE REGULATOR receiver
Ilyop_1495	COG1937	Protein conserved in bacteria
Ilyop_1496	COG2217	Heavy metal translocating P-type atpase
Ilyop_1499	COG0330	HflC and HflK could
Ilyop_1500	COG0330	HflC and HflK could
Ilyop_1501	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
Ilyop_1502	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
Ilyop_1503	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
Ilyop_1504	COG1530	ribonuclease E activity
Ilyop_1506	COG0571	ribonuclease III activity
Ilyop_1507	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Ilyop_1508	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
Ilyop_1509	COG1028	Short-chain dehydrogenase reductase Sdr
Ilyop_1510	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
Ilyop_1511	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Ilyop_1512	COG0416	fatty acid biosynthetic process
Ilyop_1513	COG0333	Belongs to the bacterial ribosomal protein bL32 family
Ilyop_1515	COG0012	GTP binding
Ilyop_1516	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
Ilyop_1517	COG0149	triose-phosphate isomerase activity
Ilyop_1521	COG0792	nuclease activity
Ilyop_1522	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
Ilyop_1523	COG0564	pseudouridine synthase activity
Ilyop_1525	COG1592	Rubrerythrin
Ilyop_1525	COG1773	rubredoxin
Ilyop_1526	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Ilyop_1526	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Ilyop_1526	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Ilyop_1528	COG2985	domain, Protein
Ilyop_1532	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
Ilyop_1533	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
Ilyop_1534	COG0583	DNA-binding transcription factor activity
Ilyop_1538	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
Ilyop_1539	COG0291	Belongs to the bacterial ribosomal protein bL35 family
Ilyop_1540	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
Ilyop_1542	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
Ilyop_1542	COG0517	IMP dehydrogenase activity
Ilyop_1543	COG2877	3-deoxy-8-phosphooctulonate synthase activity
Ilyop_1544	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Ilyop_1545	COG1940	carbohydrate kinase activity
Ilyop_1546	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
Ilyop_1547	COG0180	Tryptophanyl-tRNA synthetase
Ilyop_1552	COG1435	thymidine kinase activity
Ilyop_1553	COG3681	Belongs to the UPF0597 family
Ilyop_1554	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Ilyop_1555	COG4608	Belongs to the ABC transporter superfamily
Ilyop_1556	COG0444	Belongs to the ABC transporter superfamily
Ilyop_1558	COG0601	transmembrane transport
Ilyop_1559	COG0747	negative chemotaxis
Ilyop_1560	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
Ilyop_1562	COG0693	protein deglycase activity
Ilyop_1564	COG0730	response to heat
Ilyop_1566	COG1592	Rubrerythrin
Ilyop_1567	COG0514	ATP-dependent DNA helicase (RecQ)
Ilyop_1569	COG2824	Alkylphosphonate utilization operon protein PhnA
Ilyop_1576	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Ilyop_1577	COG1053	succinate dehydrogenase
Ilyop_1577	COG3976	FMN-binding domain protein
Ilyop_1582	COG1053	succinate dehydrogenase
Ilyop_1583	COG2851	Citrate transporter
Ilyop_1585	COG0745	RESPONSE REGULATOR receiver
Ilyop_1586	COG1342	Belongs to the UPF0251 family
Ilyop_1587	COG0489	protein tyrosine kinase activity
Ilyop_1590	COG0489	protein tyrosine kinase activity
Ilyop_1591	COG2894	cell division
Ilyop_1593	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
Ilyop_1594	COG0446	pyridine nucleotide-disulphide oxidoreductase
Ilyop_1596	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
Ilyop_1597	COG1811	Na channel or pump
Ilyop_1598	COG0493	'glutamate synthase
Ilyop_1600	COG0778	Nitroreductase
Ilyop_1605	COG0598	Magnesium transport protein CorA
Ilyop_1606	COG2364	Membrane
Ilyop_1608	COG0789	Transcriptional regulator
Ilyop_1611	COG0534	Mate efflux family protein
Ilyop_1614	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
Ilyop_1615	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
Ilyop_1616	COG1122	ATPase activity
Ilyop_1617	COG4721	ABC-type cobalt transport system, permease component
Ilyop_1619	COG0778	Nitroreductase
Ilyop_1626	COG3830	Belongs to the UPF0237 family
Ilyop_1627	COG2848	UPF0210 protein
Ilyop_1635	COG3177	Filamentation induced by cAMP protein fic
Ilyop_1638	COG1695	Transcriptional regulator
Ilyop_1639	COG2223	nitrite transmembrane transporter activity
Ilyop_1646	COG2361	Protein of unknown function DUF86
Ilyop_1668	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
Ilyop_1669	COG0557	exoribonuclease II activity
Ilyop_1670	COG1713	HD superfamily hydrolase involved in NAD metabolism
Ilyop_1672	COG0860	N-Acetylmuramoyl-L-alanine amidase
Ilyop_1677	COG0443	Heat shock 70 kDa protein
Ilyop_1679	COG1420	regulation of RNA biosynthetic process
Ilyop_1680	COG3706	GGDEF domain
Ilyop_1681	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Ilyop_1683	COG0534	Mate efflux family protein
Ilyop_1685	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Ilyop_1687	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
Ilyop_1691	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
Ilyop_1692	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
Ilyop_1693	COG3118	belongs to the thioredoxin family
Ilyop_1695	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
Ilyop_1696	COG0716	FMN binding
Ilyop_1697	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
Ilyop_1699	COG0442	prolyl-tRNA aminoacylation
Ilyop_1700	COG0217	transcriptional regulatory protein
Ilyop_1702	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
Ilyop_1704	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
Ilyop_1708	COG1757	Na H antiporter
Ilyop_1709	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
Ilyop_1711	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
Ilyop_1712	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
Ilyop_1713	COG3409	Peptidoglycan-binding domain 1 protein
Ilyop_1713	COG0793	Belongs to the peptidase S41A family
Ilyop_1714	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
Ilyop_1716	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
Ilyop_1717	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
Ilyop_1719	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
Ilyop_1720	COG0768	penicillin binding
Ilyop_1722	COG0799	negative regulation of ribosome biogenesis
Ilyop_1724	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Ilyop_1725	COG1385	rRNA (uridine-N3-)-methyltransferase activity
Ilyop_1726	COG1959	2 iron, 2 sulfur cluster binding
Ilyop_1727	COG2255	four-way junction helicase activity
Ilyop_1728	COG4399	Belongs to the UPF0754 family
Ilyop_1731	COG1732	Glycine betaine
Ilyop_1732	COG1174	glycine betaine transport
Ilyop_1734	COG0539	negative regulation of cytoplasmic translation
Ilyop_1734	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
Ilyop_1734	COG1185	polyribonucleotide nucleotidyltransferase activity
Ilyop_1735	COG1185	polyribonucleotide nucleotidyltransferase activity
Ilyop_1735	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
Ilyop_1735	COG0539	negative regulation of cytoplasmic translation
Ilyop_1737	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Ilyop_1741	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
Ilyop_1742	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Ilyop_1747	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
Ilyop_1748	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Ilyop_1751	COG1686	Belongs to the peptidase S11 family
Ilyop_1752	COG0822	iron-sulfur transferase activity
Ilyop_1753	COG1104	cysteine desulfurase activity
Ilyop_1754	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Ilyop_1756	COG0436	Aminotransferase
Ilyop_1757	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
Ilyop_1759	COG0469	pyruvate kinase activity
Ilyop_1760	COG0148	phosphopyruvate hydratase activity
Ilyop_1762	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Ilyop_1763	COG2204	response regulator
Ilyop_1768	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
Ilyop_1769	COG0750	zinc metalloprotease
Ilyop_1771	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
Ilyop_1772	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
Ilyop_1773	COG4589	Belongs to the CDS family
Ilyop_1774	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
Ilyop_1775	COG0233	cytoplasmic translational termination
Ilyop_1776	COG0528	UMP kinase activity
Ilyop_1777	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Ilyop_1778	COG0052	Belongs to the universal ribosomal protein uS2 family
Ilyop_1779	COG1335	isochorismatase
Ilyop_1780	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
Ilyop_1781	COG0203	ribosomal protein L17
Ilyop_1782	COG0202	RNA polymerase activity
Ilyop_1783	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
Ilyop_1784	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
Ilyop_1785	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
Ilyop_1787	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Ilyop_1789	COG0563	adenylate kinase activity
Ilyop_1791	COG0200	Binds to the 23S rRNA
Ilyop_1792	COG1841	ribosomal large subunit assembly
Ilyop_1793	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
Ilyop_1794	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
Ilyop_1795	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
Ilyop_1796	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
Ilyop_1797	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
Ilyop_1798	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
Ilyop_1800	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
Ilyop_1801	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
Ilyop_1802	COG0255	Belongs to the universal ribosomal protein uL29 family
Ilyop_1803	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
Ilyop_1804	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
Ilyop_1805	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
Ilyop_1806	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
Ilyop_1807	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
Ilyop_1808	COG0089	rRNA binding
Ilyop_1809	COG0088	Forms part of the polypeptide exit tunnel
Ilyop_1810	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
Ilyop_1811	COG0051	transcription antitermination factor activity, RNA binding
Ilyop_1812	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
Ilyop_1813	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
Ilyop_1814	COG0049	tRNA binding
Ilyop_1815	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
Ilyop_1816	COG0488	(ABC) transporter
Ilyop_1818	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Ilyop_1819	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
Ilyop_1819	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
Ilyop_1828	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
Ilyop_1832	COG1131	(ABC) transporter
Ilyop_1834	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Ilyop_1838	COG0470	DNA polymerase III
Ilyop_1839	COG1077	Cell shape determining protein MreB Mrl
Ilyop_1840	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
Ilyop_1841	COG0215	cysteine-tRNA ligase activity
Ilyop_1843	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
Ilyop_1843	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Ilyop_1844	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
Ilyop_1845	COG1193	negative regulation of DNA recombination
Ilyop_1846	COG0227	Belongs to the bacterial ribosomal protein bL28 family
Ilyop_1847	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
Ilyop_1848	COG0360	Binds together with S18 to 16S ribosomal RNA
Ilyop_1849	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
Ilyop_1852	COG1181	Belongs to the D-alanine--D-alanine ligase family
Ilyop_1853	COG0812	UDP-N-acetylmuramate dehydrogenase activity
Ilyop_1854	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Ilyop_1855	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
Ilyop_1856	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
Ilyop_1857	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
Ilyop_1858	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
Ilyop_1859	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
Ilyop_1865	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
Ilyop_1867	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Ilyop_1869	COG1151	hydroxylamine reductase activity
Ilyop_1870	COG0534	Mate efflux family protein
Ilyop_1876	COG3022	response to hydroperoxide
Ilyop_1880	COG0210	DNA helicase
Ilyop_1883	COG0765	amino acid transport
Ilyop_1884	COG1126	abc transporter atp-binding protein
Ilyop_1886	COG2827	Endonuclease containing a URI domain
Ilyop_1890	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Ilyop_1891	COG0095	Lipoate-protein ligase
Ilyop_1893	COG0494	nUDIX hydrolase
Ilyop_1894	COG1362	aminopeptidase activity
Ilyop_1897	COG2088	sporulation resulting in formation of a cellular spore
Ilyop_1898	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
Ilyop_1899	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
Ilyop_1900	COG3956	TIGRFAM MazG family protein
Ilyop_1901	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
Ilyop_1902	COG0445	tRNA wobble uridine modification
Ilyop_1903	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
Ilyop_1904	COG1847	R3H domain protein
Ilyop_1905	COG0706	membrane insertase activity
Ilyop_1906	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
Ilyop_1907	COG0594	ribonuclease P activity
Ilyop_1911	COG1346	cytolysis
Ilyop_1913	COG0708	Exodeoxyribonuclease III
Ilyop_1919	COG0518	GMP synthase (glutamine-hydrolyzing) activity
Ilyop_1919	COG0519	Catalyzes the synthesis of GMP from XMP
Ilyop_1949	COG0740	serine-type endopeptidase activity
Ilyop_1956	COG3561	AntA/AntB antirepressor
Ilyop_1986	COG4974	Belongs to the 'phage' integrase family
Ilyop_1987	COG1187	pseudouridine synthase activity
Ilyop_1988	COG0628	permease
Ilyop_1989	COG1773	rubredoxin
Ilyop_1990	COG0116	Belongs to the methyltransferase superfamily
Ilyop_1991	COG1192	Involved in chromosome partitioning
Ilyop_1992	COG1475	DNA binding
Ilyop_1995	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Ilyop_1997	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Ilyop_1998	COG0778	Nitroreductase
Ilyop_2005	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
Ilyop_2006	COG1805	sodium ion transport
Ilyop_2007	COG0772	Belongs to the SEDS family
Ilyop_2008	COG1464	Belongs to the NlpA lipoprotein family
Ilyop_2009	COG0367	asparagine synthase
Ilyop_2011	COG0017	Asparaginyl-tRNA synthetase
Ilyop_2013	COG0668	transmembrane transport
Ilyop_2016	COG0589	response to stress
Ilyop_2016	COG0475	glutathione-regulated potassium exporter activity
Ilyop_2019	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
Ilyop_2020	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Ilyop_2020	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Ilyop_2021	COG0307	riboflavin synthase, alpha
Ilyop_2027	COG0281	malic enzyme
Ilyop_2031	COG3772	lysozyme
Ilyop_2080	COG3723	Recombinational DNA repair protein, rece pathway
Ilyop_2086	COG0473	3-isopropylmalate dehydrogenase activity
Ilyop_2090	COG0534	Mate efflux family protein
Ilyop_2092	COG3395	kinase activity
Ilyop_2094	COG0473	3-isopropylmalate dehydrogenase activity
Ilyop_2096	COG0473	3-isopropylmalate dehydrogenase activity
Ilyop_2099	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
Ilyop_2100	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Ilyop_2103	COG0235	Class ii aldolase
Ilyop_2105	COG1346	cytolysis
Ilyop_2106	COG0583	DNA-binding transcription factor activity
Ilyop_2108	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
Ilyop_2110	COG1960	acyl-CoA dehydrogenase activity
Ilyop_2111	COG2030	dehydratase
Ilyop_2112	COG1028	Short-chain dehydrogenase reductase Sdr
Ilyop_2117	COG2031	fatty acid transporter
Ilyop_2118	COG0191	fructose-bisphosphate aldolase activity
Ilyop_2119	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Ilyop_2120	COG1172	Belongs to the binding-protein-dependent transport system permease family
Ilyop_2121	COG1129	ABC transporter
Ilyop_2123	COG3962	Belongs to the TPP enzyme family
Ilyop_2125	COG0673	inositol 2-dehydrogenase activity
Ilyop_2126	COG1349	DNA-binding transcription factor activity
Ilyop_2128	COG1082	Xylose isomerase domain protein TIM barrel
Ilyop_2130	COG1653	transport
Ilyop_2132	COG1028	Short-chain dehydrogenase reductase Sdr
Ilyop_2133	COG1609	Transcriptional regulator
Ilyop_2134	COG1028	Short-chain dehydrogenase reductase Sdr
Ilyop_2135	COG1917	Cupin 2, conserved barrel domain protein
Ilyop_2138	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Ilyop_2142	COG3181	Tripartite tricarboxylate transporter family receptor
Ilyop_2146	COG1979	alcohol dehydrogenase
Ilyop_2147	COG1028	Short-chain dehydrogenase reductase Sdr
Ilyop_2148	COG1063	alcohol dehydrogenase
Ilyop_2151	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
Ilyop_2152	COG0778	Nitroreductase
Ilyop_2154	COG1028	Short-chain dehydrogenase reductase Sdr
Ilyop_2162	COG0800	Aldolase
Ilyop_2164	COG2731	YhcH YjgK YiaL family protein
Ilyop_2165	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
Ilyop_2166	COG1362	aminopeptidase activity
Ilyop_2167	COG0745	RESPONSE REGULATOR receiver
Ilyop_2168	COG5002	protein histidine kinase activity
Ilyop_2170	COG0318	PFAM AMP-dependent synthetase and ligase
Ilyop_2171	COG0318	PFAM AMP-dependent synthetase and ligase
Ilyop_2177	COG2116	formate transmembrane transporter activity
Ilyop_2178	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
Ilyop_2179	COG1882	Formate acetyltransferase
Ilyop_2180	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
Ilyop_2183	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
Ilyop_2184	COG0521	Mo-molybdopterin cofactor biosynthetic process
Ilyop_2186	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
Ilyop_2187	COG0573	inorganic phosphate transmembrane transporter activity
Ilyop_2188	COG0581	inorganic phosphate transmembrane transporter activity
Ilyop_2189	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
Ilyop_2190	COG0704	Plays a role in the regulation of phosphate uptake
Ilyop_2191	COG0745	RESPONSE REGULATOR receiver
Ilyop_2196	COG0151	Belongs to the GarS family
Ilyop_2199	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
Ilyop_2200	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
Ilyop_2201	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
Ilyop_2202	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
Ilyop_2203	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
Ilyop_2204	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
Ilyop_2205	COG2759	Belongs to the formate--tetrahydrofolate ligase family
Ilyop_2211	COG4166	transmembrane transport
Ilyop_2212	COG0601	transmembrane transport
Ilyop_2213	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Ilyop_2214	COG0444	Belongs to the ABC transporter superfamily
Ilyop_2215	COG4608	Belongs to the ABC transporter superfamily
Ilyop_2216	COG2221	Nitrite and sulphite reductase 4Fe-4S
Ilyop_2225	COG0493	'glutamate synthase
Ilyop_2228	COG1854	S-ribosylhomocysteine lyase activity
Ilyop_2229	COG3842	ATPase activity
Ilyop_2232	COG4120	Belongs to the binding-protein-dependent transport system permease family
Ilyop_2236	COG0352	thiamine-phosphate diphosphorylase activity
Ilyop_2237	COG3706	GGDEF domain
Ilyop_2241	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
Ilyop_2247	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
Ilyop_2249	COG0668	transmembrane transport
Ilyop_2250	COG0420	3'-5' exonuclease activity
Ilyop_2251	COG0419	ATPase involved in DNA repair
Ilyop_2254	COG0352	thiamine-phosphate diphosphorylase activity
Ilyop_2255	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
Ilyop_2257	COG0070	glutamate synthase
Ilyop_2257	COG0069	glutamate synthase activity
Ilyop_2257	COG0067	glutamate synthase
Ilyop_2260	COG3457	Alanine racemase
Ilyop_2265	COG3848	Pyruvate phosphate dikinase
Ilyop_2265	COG0574	Belongs to the PEP-utilizing enzyme family
Ilyop_2265	COG3848	Pyruvate phosphate dikinase
Ilyop_2265	COG0574	Belongs to the PEP-utilizing enzyme family
Ilyop_2271	COG2190	(PTS) system
Ilyop_2273	COG1621	beta-fructofuranosidase activity
Ilyop_2274	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Ilyop_2275	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
Ilyop_2276	COG0302	gtp cyclohydrolase
Ilyop_2277	COG0602	queuosine metabolic process
Ilyop_2279	COG1924	4 iron, 4 sulfur cluster binding
Ilyop_2281	COG3901	Regulator of nitric oxide reductase transcription
Ilyop_2281	COG0348	domain, Protein
Ilyop_2284	COG1053	succinate dehydrogenase
Ilyop_2285	COG1053	succinate dehydrogenase
Ilyop_2286	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
Ilyop_2287	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
Ilyop_2288	COG0805	protein transport
Ilyop_2293	COG1733	regulation of RNA biosynthetic process
Ilyop_2295	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
Ilyop_2296	COG2885	chlorophyll binding
Ilyop_2299	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
Ilyop_2302	COG0425	Belongs to the sulfur carrier protein TusA family
Ilyop_2303	COG0709	Synthesizes selenophosphate from selenide and ATP
Ilyop_2304	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Ilyop_2306	COG0248	Ppx GppA phosphatase
Ilyop_2310	COG4191	Histidine kinase
Ilyop_2311	COG2204	response regulator
Ilyop_2312	COG4191	Histidine kinase
Ilyop_2314	COG2770	Histidine kinase
Ilyop_2314	COG3437	response regulator, receiver
Ilyop_2321	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
Ilyop_2322	COG3023	N-Acetylmuramoyl-L-alanine amidase
Ilyop_2323	COG0157	Belongs to the NadC ModD family
Ilyop_2324	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
Ilyop_2326	COG1966	Carbon starvation protein
Ilyop_2327	COG0598	Magnesium transport protein CorA
Ilyop_2331	COG0561	phosphatase activity
Ilyop_2332	COG3012	SEC-C Motif Domain Protein
Ilyop_2333	COG1272	protein, Hemolysin III
Ilyop_2336	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
Ilyop_2338	COG0659	secondary active sulfate transmembrane transporter activity
Ilyop_2340	COG0745	RESPONSE REGULATOR receiver
Ilyop_2342	COG4656	Part of a membrane complex involved in electron transport
Ilyop_2352	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
Ilyop_2353	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
Ilyop_2354	COG4869	propanediol catabolic process
Ilyop_2360	COG4820	ethanolamine utilization protein (EutJ)
Ilyop_2361	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Ilyop_2362	COG1971	Probably functions as a manganese efflux pump
Ilyop_2363	COG1797	cobyrinic acid a,c-diamide synthase activity
Ilyop_2365	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
Ilyop_2369	COG2875	Belongs to the precorrin methyltransferase family
Ilyop_2375	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Ilyop_2376	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
Ilyop_2377	COG0181	hydroxymethylbilane synthase activity
Ilyop_2379	COG0113	porphobilinogen synthase activity
Ilyop_2380	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
Ilyop_2381	COG2066	Belongs to the glutaminase family
Ilyop_2384	COG0534	Mate efflux family protein
Ilyop_2385	COG1648	precorrin-2 dehydrogenase activity
Ilyop_2385	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
Ilyop_2386	COG3706	GGDEF domain
Ilyop_2386	COG0745	RESPONSE REGULATOR receiver
Ilyop_2389	COG1108	ABC-type Mn2 Zn2 transport systems permease components
Ilyop_2390	COG1121	(ABC) transporter
Ilyop_2392	COG3706	GGDEF domain
Ilyop_2393	COG3437	response regulator, receiver
Ilyop_2393	COG2770	Histidine kinase
Ilyop_2395	COG0432	Pfam Uncharacterised protein family UPF0047
Ilyop_2396	COG3290	protein histidine kinase activity
Ilyop_2398	COG3493	citrate carrier protein
Ilyop_2401	COG5001	Diguanylate cyclase
Ilyop_2401	COG1716	ATPase activity
Ilyop_2403	COG0450	alkyl hydroperoxide reductase
Ilyop_2405	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
Ilyop_2407	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
Ilyop_2408	COG1605	Chorismate mutase
Ilyop_2408	COG0077	Prephenate dehydratase
Ilyop_2410	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
Ilyop_2411	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
Ilyop_2413	COG0512	Glutamine amidotransferase of anthranilate synthase
Ilyop_2414	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
Ilyop_2417	COG0133	tryptophan synthase activity
Ilyop_2418	COG0159	tryptophan synthase activity
Ilyop_2419	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
Ilyop_2420	COG0612	Peptidase, M16
Ilyop_2424	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
Ilyop_2427	COG0646	methionine synthase
Ilyop_2427	COG1410	methionine synthase
Ilyop_2428	COG1959	2 iron, 2 sulfur cluster binding
Ilyop_2429	COG0697	spore germination
Ilyop_2430	COG1278	Cold shock
Ilyop_2433	COG1811	Na channel or pump
Ilyop_2440	COG3850	Histidine kinase
Ilyop_2440	COG5002	protein histidine kinase activity
Ilyop_2441	COG0745	RESPONSE REGULATOR receiver
Ilyop_2442	COG0463	Glycosyl transferase, family 2
Ilyop_2443	COG3952	Lipid A Biosynthesis
Ilyop_2443	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Ilyop_2449	COG0670	Belongs to the BI1 family
Ilyop_2452	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
Ilyop_2459	COG2033	superoxide reductase activity
Ilyop_2461	COG0426	domain, Protein
Ilyop_2461	COG1773	rubredoxin
Ilyop_2462	COG1914	H( )-stimulated, divalent metal cation uptake system
Ilyop_2466	COG3118	belongs to the thioredoxin family
Ilyop_2469	COG2271	Major facilitator Superfamily
Ilyop_2470	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
Ilyop_2474	COG0492	ferredoxin-NADP+ reductase activity
Ilyop_2478	COG0488	(ABC) transporter
Ilyop_2480	COG3706	GGDEF domain
Ilyop_2483	COG0440	acetolactate synthase activity
Ilyop_2484	COG0028	Belongs to the TPP enzyme family
Ilyop_2485	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
Ilyop_2486	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
Ilyop_2487	COG0284	orotidine-5'-phosphate decarboxylase activity
Ilyop_2488	COG0167	dihydroorotate dehydrogenase activity
Ilyop_2489	COG0543	2 iron, 2 sulfur cluster binding
Ilyop_2490	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
Ilyop_2491	COG0540	Belongs to the ATCase OTCase family
Ilyop_2493	COG2925	Exonuclease
Ilyop_2494	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
Ilyop_2495	COG0786	glutamate:sodium symporter activity
Ilyop_2496	COG3647	Membrane
Ilyop_2497	COG3279	Response regulator of the LytR AlgR family
Ilyop_2498	COG3275	phosphorelay sensor kinase activity
Ilyop_2502	COG0604	alcohol dehydrogenase
Ilyop_2503	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
Ilyop_2505	COG1509	lysine 2,3-aminomutase activity
Ilyop_2506	COG1982	Orn Lys Arg decarboxylase major
Ilyop_2509	COG0601	transmembrane transport
Ilyop_2510	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Ilyop_2511	COG0444	Belongs to the ABC transporter superfamily
Ilyop_2512	COG4608	Belongs to the ABC transporter superfamily
Ilyop_2513	COG4166	transmembrane transport
Ilyop_2514	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
Ilyop_2515	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
Ilyop_2516	COG1115	amino acid carrier protein
Ilyop_2517	COG1597	lipid kinase activity
Ilyop_2519	COG0592	DNA-directed DNA polymerase activity
Ilyop_2520	COG0252	asparaginase activity
Ilyop_2522	COG5002	protein histidine kinase activity
Ilyop_2523	COG0745	RESPONSE REGULATOR receiver
Ilyop_2527	COG0668	transmembrane transport
Ilyop_2531	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Ilyop_2534	COG2755	lipolytic protein G-D-S-L family
Ilyop_2535	COG0789	Transcriptional regulator
Ilyop_2540	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
Ilyop_2541	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Ilyop_2545	COG2996	Protein conserved in bacteria
Ilyop_2547	COG2608	mercury ion transmembrane transporter activity
Ilyop_2549	COG1047	Peptidyl-prolyl cis-trans
Ilyop_2550	COG0668	transmembrane transport
Ilyop_2551	COG0668	transmembrane transport
Ilyop_2553	COG0784	Response regulator, receiver
Ilyop_2554	COG4191	Histidine kinase
Ilyop_2557	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
Ilyop_2558	COG1053	succinate dehydrogenase
Ilyop_2562	COG4656	Part of a membrane complex involved in electron transport
Ilyop_2564	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
Ilyop_2567	COG1027	Aspartate ammonia-lyase
Ilyop_2571	COG2897	thiosulfate sulfurtransferase activity
Ilyop_2575	COG1773	rubredoxin
Ilyop_2575	COG1592	Rubrerythrin
Ilyop_2588	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
Ilyop_2589	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
Ilyop_2590	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Ilyop_2591	COG0505	Belongs to the CarA family
Ilyop_2592	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
Ilyop_2593	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
Ilyop_2595	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
Ilyop_2598	COG1454	alcohol dehydrogenase
Ilyop_2599	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
Ilyop_2600	COG0531	amino acid
Ilyop_2603	COG0473	3-isopropylmalate dehydrogenase activity
Ilyop_2604	COG0697	spore germination
Ilyop_2605	COG3384	dioxygenase
Ilyop_2607	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
Ilyop_2609	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
Ilyop_2610	COG1518	maintenance of DNA repeat elements
Ilyop_2612	COG0534	Mate efflux family protein
Ilyop_2614	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
Ilyop_2619	COG1120	ATPase activity
Ilyop_2620	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Ilyop_2623	COG1132	(ABC) transporter
Ilyop_2627	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
Ilyop_2633	COG0446	pyridine nucleotide-disulphide oxidoreductase
Ilyop_2645	COG0446	pyridine nucleotide-disulphide oxidoreductase
Ilyop_2648	COG2252	PERMEase
Ilyop_2649	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Ilyop_2656	COG2897	thiosulfate sulfurtransferase activity
Ilyop_2658	COG1116	anion transmembrane transporter activity
Ilyop_2662	COG1522	sequence-specific DNA binding
Ilyop_2662	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Ilyop_2664	COG0436	Aminotransferase
Ilyop_2666	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
Ilyop_2667	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Ilyop_2668	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
Ilyop_2669	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
Ilyop_2671	COG0019	diaminopimelate decarboxylase activity
Ilyop_2672	COG1473	amidohydrolase
Ilyop_2675	COG0446	pyridine nucleotide-disulphide oxidoreductase
Ilyop_2687	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Ilyop_2688	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
Ilyop_2689	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
Ilyop_2690	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
Ilyop_2697	COG0392	lysyltransferase activity
Ilyop_2697	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
Ilyop_2700	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
Ilyop_2701	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
Ilyop_2702	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Ilyop_2704	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
Ilyop_2707	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
Ilyop_2707	COG0140	phosphoribosyl-ATP diphosphatase activity
Ilyop_2715	COG3279	Response regulator of the LytR AlgR family
Ilyop_2717	COG0674	pyruvate-flavodoxin oxidoreductase activity
Ilyop_2717	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
Ilyop_2718	COG1013	pyruvate-flavodoxin oxidoreductase activity
Ilyop_2720	COG3275	phosphorelay sensor kinase activity
Ilyop_2722	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
Ilyop_2723	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
Ilyop_2724	COG4770	biotin carboxylase activity
Ilyop_2726	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
Ilyop_2727	COG0346	lactoylglutathione lyase activity
Ilyop_2729	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
Ilyop_2729	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
Ilyop_2731	COG0427	acetyl-CoA hydrolase
Ilyop_2732	COG2985	domain, Protein
Ilyop_2736	COG1119	ATPase activity
Ilyop_2738	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Ilyop_2738	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Ilyop_2742	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
Ilyop_2743	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
Ilyop_2744	COG1396	sequence-specific DNA binding
Ilyop_2746	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
Ilyop_2764	COG2357	RelA SpoT domain protein
Ilyop_2768	COG1175	transmembrane transport
Ilyop_2770	COG4134	Bacterial extracellular solute-binding protein
Ilyop_2771	COG2897	thiosulfate sulfurtransferase activity
Ilyop_2772	COG0493	'glutamate synthase
Ilyop_2775	COG0398	Pfam SNARE associated Golgi protein
Ilyop_2779	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Ilyop_2780	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
Ilyop_2782	COG0517	IMP dehydrogenase activity
Ilyop_2782	COG0516	GMP reductase activity
Ilyop_2783	COG0542	response to heat
Ilyop_2786	COG0363	glucosamine-6-phosphate deaminase activity
Ilyop_2787	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
Ilyop_2788	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
Ilyop_2790	COG0561	phosphatase activity
Ilyop_2791	COG0482	sulfurtransferase activity
Ilyop_2793	COG1104	cysteine desulfurase activity
Ilyop_2797	COG0688	phosphatidylethanolamine metabolic process
Ilyop_2798	COG1803	Methylglyoxal synthase
Ilyop_2800	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
Ilyop_2801	COG1490	D-aminoacyl-tRNA deacylase activity
Ilyop_2803	COG0372	Belongs to the citrate synthase family
Ilyop_2809	COG1192	Involved in chromosome partitioning
Ilyop_2814	COG3706	GGDEF domain
Ilyop_2814	COG4251	negative regulation of phosphorylation
Ilyop_2814	COG5001	Diguanylate cyclase
Ilyop_2814	COG2203	Gaf domain
Ilyop_2816	COG2770	Histidine kinase
Ilyop_2816	COG3437	response regulator, receiver
Ilyop_2818	COG1773	rubredoxin
Ilyop_2821	COG1773	rubredoxin
Ilyop_2822	COG1773	rubredoxin
Ilyop_2822	COG0426	domain, Protein
Ilyop_2830	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
Ilyop_2833	COG2132	Multicopper oxidase
Ilyop_2838	COG5002	protein histidine kinase activity
Ilyop_2839	COG3842	ATPase activity
Ilyop_2841	COG1840	ABC-type Fe3 transport system, periplasmic component
Ilyop_2843	COG0471	metal ion transport
Ilyop_2843	COG3273	potassium ion transport
Ilyop_2844	COG0529	Catalyzes the synthesis of activated sulfate
Ilyop_2848	COG0529	Catalyzes the synthesis of activated sulfate
Ilyop_2848	COG2895	sulfate adenylyltransferase (ATP) activity
Ilyop_2853	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Ilyop_2856	COG2199	diguanylate cyclase activity
Ilyop_2856	COG2203	Gaf domain
Ilyop_2857	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
Ilyop_2865	COG2152	Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose
Ilyop_2866	COG2152	Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose
Ilyop_2867	COG0438	transferase activity, transferring glycosyl groups
Ilyop_2869	COG3328	transposase activity
Ilyop_2879	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
Ilyop_2880	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
Ilyop_2887	COG4962	Type ii secretion system protein e
Ilyop_2889	COG3451	type IV secretory pathway VirB4
Ilyop_2900	COG3177	Filamentation induced by cAMP protein fic
Ilyop_2901	COG1373	ATPase (AAA superfamily
Ilyop_2910	COG1024	Enoyl-CoA hydratase
Ilyop_2913	COG0604	alcohol dehydrogenase
Ilyop_2914	COG0446	pyridine nucleotide-disulphide oxidoreductase
Ilyop_2914	COG1902	pentaerythritol trinitrate reductase activity
Ilyop_2918	COG1028	Short-chain dehydrogenase reductase Sdr
Ilyop_2919	COG0277	FAD linked oxidase domain protein
Ilyop_2920	COG1070	Carbohydrate kinase
Ilyop_2922	COG2086	electron transfer activity
Ilyop_2923	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
Ilyop_2925	COG1028	Short-chain dehydrogenase reductase Sdr
Ilyop_2926	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
Ilyop_2928	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
Ilyop_2931	COG4804	nuclease activity
Ilyop_R0032	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family