LOCUS MH616883 7321 bp DNA circular ENV 05-AUG-2018 DEFINITION Inoviridae sp. isolate ctbd3, complete genome. ACCESSION MH616883 VERSION MH616883.1 DBLINK BioProject: PRJNA393166 BioSample: SAMN09074534 Sequence Read Archive: SRR7122364 KEYWORDS ENV. SOURCE Inoviridae sp. (animal metagenome) ORGANISM Inoviridae sp. Viruses; ssDNA viruses; Inoviridae; unclassified Inoviridae. REFERENCE 1 (bases 1 to 7321) AUTHORS Tisza,M., Buck,C., Pastrana,D., Welch,N. and Peretti,A. TITLE Uncovering a Universe of Circular DNA Viruses in Animal Metagenomes JOURNAL Unpublished REFERENCE 2 (bases 1 to 7321) AUTHORS Tisza,M., Buck,C., Pastrana,D., Welch,N. and Peretti,A. TITLE Direct Submission JOURNAL Submitted (12-JUL-2018) Lab of Cellular Oncology, National Cancer Institute, 37 Convent Dr., Room 4118, Bethesda, MD 20814, USA COMMENT ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.11.0 Genome Coverage :: 73.988526x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..7321 /organism="Inoviridae sp." /mol_type="genomic DNA" /isolate="ctbd3" /isolation_source="rainbow trout tissue" /db_xref="taxon:2219103" /environmental_sample /country="USA" /collection_date="01-Jun-2017" /note="genome binned from sequencing reads available in SRX4043882; metagenomic; derived from metagenome: animal metagenome" CDS 1..318 /note="No HHBLITS hits" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AXH74149.1" /translation="MFAKYQTVSGIKENMEDAFLTASAMPRLSSICRNPVQSQSKKEI TVSNRNCMACSTMPLIHAANFESSSPTAISHAVRIMITPRIDQAALNTTSRVGLTVSN NLQ" CDS complement(222..1208) /inference="similar to AA sequence:UniProtKB:A0A0F7QUE8_PSEAI" /codon_start=1 /transl_table=11 /product="putative coat protein A" /protein_id="AXH74155.1" /translation="MGTEGSVIDSKGKKYVLSRASPDSICTSSCQYKEPRATTCYLLE GSKTRGFCNYIYQLQKDPEDTKYPQVCNTYTDYDDPEQGDPLNPSDETGGTDDPGDET PTDPEDGGSGNSGCTGTNCDGNNQGGGYESGNTGGGSGSGGSEGGSTGGGTGSGGSDG GGSTGGTGDGETPGTGTGGGQGGGTGTGGGSGNGSGSGGSPGTGSGSGSSGGGSSGSG EGDGSGSGDGLGSFESPGDLTLSTDQLQQRSESAATSYAASYKQTQTFQAINQFSGES HSGTCPTGSVELFDQTITFDGHCKLFDTVKPTLEVVFKAAWSILGVIIILTA" CDS complement(2176..2457) /note="No HHBLITS hits" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AXH74154.1" /translation="MSRFPAFSIPKLSNSSLLRSRRFNLLASMRHRVPLASRTAKLLS SLTFRSSRRLLLRGLRNAWRALLSWRFVLRRGRACLFQPLGSSSGFPSV" CDS complement(2276..2593) /inference="similar to AA sequence:PDB:1PFS_B" /codon_start=1 /transl_table=11 /product="single-stranded DNA binding protein" /protein_id="AXH74153.1" /translation="MISRDPRTDTPMSQAIVATIELTGQNKTGTSMKSGSPKPWWRLG AYVQVPGLLHPQAIEFFTSEVTQVQPAGKYEAPCATRIQDGKIVVEPDLSQLKAVTAS RAA" CDS 2535..2780 /note="No HHBLITS hits" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AXH74150.1" /translation="MVATIAWLIGVSVRGSREIMVKCRVRQHENTITRKHDMAIPWKY PENLACGLPWQGSEREFAAKKPQISAQKAGEMTTYGH" CDS complement(2824..3102) /note="No HHBLITS hits" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AXH74152.1" /translation="MLSGAMMPLPNCSMLPSVVVGLLSAVCSSPLAAMCSRRISLIHI SRLIAFFSLQTSRSCSISVEDFIQLLTPLQQVFQYLCMCTVLFGLQQF" CDS complement(2933..4204) /inference="similar to AA sequence:RefSeq:WP_079388687.1" /codon_start=1 /transl_table=11 /product="replication protein" /protein_id="AXH74156.1" /translation="MTTIVSKPPQEAPGALGGEAALGSIAKSSPTSDLKVAKAARAQR YQALSQSRGWLKPLARKNPNKAYGWDLHRTQDCRYKRVGIGVTVHFDQKHQTAFYGDV ATCGSVWACPVCATIIQNRRRPEVQQLVDWAYDQGYQVTMLTFTFPHKAFDRLKFMLN SQADAFTRLRKGNSWDLFRKRFGFVGLVRSLENTHGANGWHPHTHEIWITKDLTPVAR GDFEAFVKRRWKMACIKAGLLDDTNKAQVFAFDLHAVDVRYDVSTSDYLVKQDNSRKW GVDREMTAQVAKVAPDGVTPTVHPHEFLIRQSQGDDARYREYVTGMHGKRQLYWSQGL KDLCGLKDISDEEISKEHTEKADLLAHLTDGQWNVVRGNDALAELLDAAERGGWPAIC CLLKSLGCDVLEANLLDPHFEVNRVLFAPDQ" CDS complement(4254..4607) /note="No HHBLITS hits" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AXH74151.1" /translation="MLCSPSPIPLSVPLLLRKNRFTSSALSTFVTPSKLLVLPTTRIL PRSSATSCANTLPSMVKVVFCEYNSRSLLDLPGELHRQPSVFPFSASSKAFSVASRPI YCTQKKRLLSEPFCS" CDS complement(4885..6114) /inference="protein motif:CDD:274173" /codon_start=1 /transl_table=11 /product="type IV pilus protein" /protein_id="AXH74158.1" /translation="MTNLKSIFFAAFVFLLSFNTYADEPLTFDFGSIQTSDALQLIAD YANKNIVVADDVSGAISLRMKDVTWEQALDYVVLRKQLHQFESDGVIFVSRNKDYFSG DETAQGYGSGGSHSPKKKVVYPMSLHKVRYITAAEAIKGFPLAQGDDGVETLQLNEQA NVIVARLAPERVAELRQYLSMIDVIRRQVMIEARIVEVDTSYTKSLGVNWRGSIGIGD VTAAVNSQLSAISNAVSTGGLTFVSGGNLLDARLAAMEAHGKGKIISQPRVYTADREQ ARIGRGTEVPYQQSAGDGATSVSFKEASLALDVTPVIDDTGAFLSIKLSKDEPDYASA VDGVPPIKTASVTSRVRLKMGETVALGGVYSNAYGDQIKRVPGLSRLPWIGSWFQYRS HSDTNSELILFLTIREA" CDS complement(6120..7226) /inference="protein motif:CDD:226613" /codon_start=1 /transl_table=11 /product="zonular occludens toxin" /protein_id="AXH74157.1" /translation="MPIHAYVGKPGHGKSYGVVERVVIPSLKQNRHVVTNIPLNADDL LADFGGNITQLPEDWFDLEDMAELFPPGCVAILDEVWRRWPRGQRSNMANKLDQSLLA EHRHKVDARNNSMRIVLVTQDLQQLANWACLLIETTFRVVKLSKKVYRVDVYNGSVTG DKPSQKNLIRQYPGKFSSDIHRYYSSATQSSTGEVGDESVADKSGSILRSWGLWSLVG IFIICLTSGLYGVSSFFSSSPKSPVKPESSTNPVVTAKVEKQQSKPVPSVVFSSEWRL AGLVHPAQPKPDSDSASFAVIVNRSGITRYIPFDQCSYYEGFKDAFCDLDGQRITKWS SSNSTFLNPTEEVFGSGSAQRSVSRPTSEPPMIR" ORIGIN 1 atgtttgcaa aataccagac tgtttcaggt ataaaagaga acatggaaga tgcatttctt 61 acagcctcag caatgccaag actatcgagc atttgcagaa accctgtcca aagccagtca 121 aaaaaggaaa taactgtatc taacaggaac tgtatggctt gctcaactat gcctttaatc 181 catgcagcaa attttgaaag tagttcgccc acggctatat ctcacgcagt aagaataatg 241 ataacgccta gaattgacca agcggcttta aatacaactt caagggtcgg cttaactgta 301 tcaaacaact tacaatgacc atcgaaggta atagtttgat caaaaagctc gacgctacca 361 gtcgggcaag ttcccgagtg ggattcgccc gaaaattgat taatagcttg gaaagtctga 421 gtttgtttat aactagccgc atagctagta gcagcagact cagacctttg ctgtagctga 481 tcggtactta gagtcaaatc accaggtgac tcaaagctac caagcccatc gccagaacca 541 gagccatcac cttcaccaga accggagctg ccgccgccag acgaaccaga cccggagccc 601 gttccaggag acccaccaga cccgctaccg ttgcccgagc cgccgcccgt accagtgcca 661 ccaccttgac caccaccagt accagtacca ggagtttcac catcaccggt gccgcctgta 721 gagcctcccc catccgatcc accagagccg gtgccaccac cagtagaacc gccttcagag 781 ccaccagaac cactaccacc gccagtattg cccgattcat agccgccacc ttgattattg 841 ccatcacagt tagttccggt acaaccagaa ttgcccgaac ctccatcctc tggatcagtt 901 ggagtttcat caccagggtc gtcagtacca ccagtttcat cagatggatt caacggatcg 961 ccttgctcag ggtcatcata atcagtgtag gtattgcaaa cttgaggata cttagtatct 1021 tccgggtctt tctgcaactg ataaatgtag ttacagaaac cacgtgtttt actaccctct 1081 aaaagataac aagttgttgc gcgaggctcc ttgtattgac aactcgaagt gcaaatagaa 1141 tccgggcttg ctcttgatag aacatacttc ttacctttgg aatcgatcac agaaccctca 1201 gtgcccatag cctctaaagt aggctgacag ttaggaactg aggtagacgg atcagtaccc 1261 tgaatactaa gggttacatt agtgtcatct ctagtttcag tatatttagg ctcataattt 1321 gtttcgccgt caaatggaag tctatcaagt ttcttacgag aaaaagcaac attgaaagta 1381 cactgataaa cttcattggc gaaaaaggaa caaccctgaa aagttggctt gtcaaaagta 1441 taggtgttgt atttatcatc agtatatacg cgcttcgcaa atgcggtagc gtattcgaaa 1501 ccgtaagctt ttgcagcttc cgcaggtgta gcaaatttag ctgttatatc gcacggataa 1561 acagaggcat tactaaatgc gcatttataa tacttatcat actttccagc atgagcagta 1621 gcaggaaata tgttaacaaa tagagcaagc aacgcagtaa tcaatagtcg cacttaccac 1681 ccccggaaag tggcaaaggc acaagacgcg ccgataacga aaaacgcgaa gacatagaga 1741 tgttccattt cggacctctg agctaaaaaa aaggccgcta ttgggcggcc ttctgcgttg 1801 ccagtcgaac ttaacgcttg aggaagccca ggacgatacg agcgcctttg atgcctgcat 1861 aaataccggc cagaacagcg gcaacactga gaacgccggt agcaataccg gagaaatcga 1921 caccagtagt gatcttcgtg taatcccagg tcgcagcctc ggccgcgaaa acagaaggtg 1981 cagatacagc agtcacagca acaacagcag cagcggagaa aagcgatttg agtttgagca 2041 ttatcttttt ctcaaagagt tttgatgaag ttgagtagca cacgaacacc caggccaaac 2101 accaaaaagg cagttaccag ggtgaaacca gcaccgaaag cgacccccaa ttgagcaggg 2161 tcaagttgtg acgggtcaaa cggaagggaa gccgcttgaa cttcccaagg gttggaacaa 2221 acaggcacgc ccccgtctga ggacaaatcg ccaggacaat agagcgcgcc aggcattacg 2281 cagcccgcga agcagtaacc gccttgagct gcgaaaggtc aggctcgaca acaattttgc 2341 cgtcctggat gcgagtggca cacggtgcct catacttgcc agcaggttga acctgcgtga 2401 cctcagaagt gaagaattcg atagcttggg gatggagaag gccgggaacc tggacatagg 2461 caccgagacg ccaccagggc tttggcgaac cggatttcat agaagtaccg gttttgttct 2521 gaccggtcag ttcgatggtt gcgacgatag cttggctcat aggggtatcc gttcgcgggt 2581 ctcgcgagat catggttaag tgcagagtgc gtcaacacga aaacacgata acacgaaaac 2641 acgacatggc aataccctgg aaatacccag aaaatttggc ttgcgggcta ccttggcaag 2701 gaagtgagag ggaatttgca gccaaaaaac cacaaattag cgcccaaaag gcgggagaaa 2761 tgacaacata tggccactga tcggctaaaa aatatctcgg tttccaagga agtttggacc 2821 cagttaaaat tgctggaggc cgaaaaggac tgtacacata cacaggtatt ggaatacctg 2881 ttgcaaagga gtaagcaact ggatgaaatc ctcgacggag atgctgcagg acctactggt 2941 ctggagcgaa aagaacgcga ttaacctcga aatgtggatc aaggagattc gcctcgagca 3001 catcgcagcc aagggacttg agcagacagc agatagcagg ccaaccacca cgctcggcag 3061 catcgagcaa ttcggcaagg gcatcattgc cccggacaac attccattgt ccgtctgtca 3121 ggtgagctag aaggtcggct ttctcagtgt gctccttgga aatctcctcg tctgaaatgt 3181 ccttgaggcc gcagagatcc ttgaggccct gagaccaata gagctgacgc ttcccatgca 3241 tgcccgttac atattcacgg tagcgggcat catcgccctg ggattggcga atcaagaact 3301 catgcggatg aaccgtagga gtaaccccat cgggtgccac cttagcgacc tgagcagtca 3361 tttcacgatc aacaccccat ttgcgtgaat tgtcctgctt gaccagatag tcagaagtag 3421 aaacgtcata gcgcacgtct acggcgtgca gatcgaaagc aaaaacctga gctttgttcg 3481 tgtcatcgag caggccagct ttaatgcagg ccattttcca gcgacgtttt acgaatgctt 3541 caaaatcgcc gcgggcaaca ggggtcaaat ccttggtgat ccagatttca tgggtgtgag 3601 gatgccagcc attcgccccg tgggtgttct caagagaacg gacaaggcca acgaaaccaa 3661 agcgcttgcg aaacagatcc cagctattgc ccttgcgtag acgggtgaaa gcatcggcct 3721 gactgttcag catgaattta agacgatcga acgccttatg aggaaaggta aaggtcagca 3781 tggtgacttg atagccctga tcataggccc agtccaccag ctgctgcacc tcaggacgcc 3841 ggcggttttg aatgatggtc gcgcagacag ggcaagccca tacagagcca caggtagcca 3901 cgtcaccgta aaaggcggtc tggtgttttt ggtcaaaatg aacggtaacg ccgatgccaa 3961 cccgcttgta gcgacaatct tgggtgcggt ggagatccca gccataagcc ttgttcggat 4021 tcttgcgagc caggggcttg agccagccgc gtgactgaga aagggcctga taacgctgtg 4081 cgcgagcagc tttagccacc ttgagatcag aggtggggga ggatttcgca atactaccta 4141 gggcggcttc gccgcctaat gcacctggag cctcttgagg gggctttgag acaatcgttg 4201 tcatgctaga atgtccttgc aagcaaagcc ccagaccttg gccgggaagg gctttagcta 4261 cagaagggct ccgaaaggag cctttttttt tgcgtgcagt aaataggtcg agaggctacg 4321 gagaacgcct tcgaggaagc ggaaaaaggg aatacagagg gttgccggtg gagctcaccg 4381 ggcagatcga gaagagacct agaattgtat tcacagaaga cgaccttgac catgctgggc 4441 aacgtatttg cgcatgaagt cgcggatgac ctgggaagaa ttctggtcgt tggaagcaca 4501 agcagctttg aaggcgtcac gaaggtcgac agggcacttg aggtaaaccg atttttcctc 4561 agaagcagcg gaacggacag gggtattggg cttggtgaac atagcatggc tcctagaaaa 4621 tatagtgcaa gtatatacct aatatttacg ctgtaaatag gatatcgtag aaaagcccct 4681 ccgggggccc tccgggagct ctcggcgagg ccaggggtgc ggggagaaaa gcactcccca 4741 caccccaggc ggagagtaat ttgagcgagg taaggtaaag ggatcgcttc gctccgggac 4801 tccgttcatc gagacaaaaa agacgtctcg acgagccggg gtcgcggccc ttgacctgga 4861 cagaacacgg gtgaggcata gaaatcaggc ctcacgaatt gtcaaaaaca ggataagttc 4921 ggaattggta tcagagtggc tgcgatactg aaaccaacta ccgatccatg gcaatcggga 4981 tagaccaggt acacgcttaa tctgatcgcc ataggcattt gaataaacgc cgcccagggc 5041 aacggtttcg cccatcttta accttactct agatgtaacc gatgctgttt taataggcgg 5101 aacaccatca acagcactcg cataatcggg ctcatctttt gaaagcttta tgctaagaaa 5161 agcaccggta tcatcaatta caggagtaac gtcgagagct agcgatgctt ctttaaatga 5221 aacagaggtt gcaccatcac cagcagattg ttggtaagga acttcggtac cgcgaccaat 5281 acgcgcctgt tcacgatcag cagtataaac gcggggttga gaaataatct tccctttgcc 5341 atgagcctcc attgcagcaa gtcgcgcatc gagaaggttt ccaccactta caaaagtcaa 5401 acctccagtt gaaacagcat ttgaaatagc tgaaagttga gaattaacag cagcagtcac 5461 atcaccaatt ccaatagaac cccgccagtt aacaccaaga gattttgtat atgaagtatc 5521 aacctcgact atgcgagcct caatcatcac ctgacgccgg ataacgtcaa tcatggaaag 5581 gtactgtcga agttcagcaa cacgctcagg agccaagcga gctacgataa cgttggcctg 5641 ctcattcaat tgaagggtct caactccatc atcaccctgg gctagaggaa aacccttaat 5701 agcttctgcg gcagtgatat accgcacttt gtgaaggctc ataggataaa caaccttttt 5761 cttaggcgaa tgagaaccac ctgagccata gccctgggcg gtttcatcac ctgagaaata 5821 gtccttgtta cgagaaacaa atataacacc atcggattca aactgatgga gttgctttct 5881 taaaacaaca tagtctaaag cttgctccca tgtaacatcc ttcatacgaa ggctaatagc 5941 accggaaacg tcatcagcaa caacaatatt cttattagca tagtccgcaa taagttgaag 6001 tgcgtcagaa gtctggatag aaccaaaatc aaatgttaat ggttcatctg cataagtatt 6061 aaaagataaa agaaatacaa aggcagcaaa gaaaatactt tttaaattag tcatcgcaat 6121 tacctgatca tcggtggttc ggaagtgggt cggcttacgc tacgctgggc cgacccactt 6181 ccgaacacct cttccgtagg attaaggaat gtagaattag agctagacca tttagttata 6241 cgctgaccat ctaggtcaca aaatgcatct ttgaaacctt cataataaga acattggtca 6301 aaaggaatat aacgggttat accactccta ttaacgatga ctgcaaagga tgcagaatca 6361 gaatcaggtt taggctgtgc aggatgaaca agcccggcaa gtcgccattc agaagaaaag 6421 acaaccgagg gaacaggctt agactgttgt ttctcaactt tagcagtaac tacagggttt 6481 gtactagact ctggtttaac aggagatttt ggtgaacttg aaaaaaagct agaaacacca 6541 taaagaccag acgttaggca aattataaat ataccaacta aagaccaaag accccaagag 6601 cgaagaatag aaccggactt atctgcaaca gattcatcac caacttcacc agtagaagac 6661 tgagtagcgg agctataata acgatgaata tcgctagaga atttcccagg gtattggcga 6721 ataagattct tttgagaagg tttatcacca gtcaccgagc cattataaac atcgacacga 6781 taaaccttct tagacaactt aactactcta aaagtagttt ctataaggag gcaagcccaa 6841 tttgctagtt gctgtaggtc ttgggtaact agaacaatac gcattgagtt attacgggca 6901 tcaactttat gtcgatgttc ggcaagtaat gactgatcta gtttgttagc catgtttgag 6961 cgctgccccc tgggccagcg acgccagacc tcatcgagga tcgcaacaca tccaggggga 7021 aaaagttctg ccatgtcctc caggtcaaac cagtcctctg gcagctgagt aatgttccca 7081 ccaaaatcgg cgagcaagtc atctgcattg agaggaatat tagtaacaac atgacgattc 7141 tgtttaagcg acgggatgac tacgcgctca acgacaccat agcttttgcc atgacctggc 7201 ttaccaacat aagcatgaat aggcatctat cgacccttac ccaaaaattg gaatgcgacg 7261 gattagaaat cgaatagcaa gagccccaag aactacgcct attccatatt ggacttgagc 7321 c //