LOCUS MH649021 7006 bp DNA circular ENV 01-SEP-2018 DEFINITION Inoviridae sp. isolate ctii000, complete genome. ACCESSION MH649021 VERSION MH649021.1 DBLINK BioProject: PRJNA393166 BioSample: SAMN09074532 Sequence Read Archive: SRR7122358 KEYWORDS ENV. SOURCE Inoviridae sp. (animal metagenome) ORGANISM Inoviridae sp. Viruses; ssDNA viruses; Inoviridae; unclassified Inoviridae. REFERENCE 1 (bases 1 to 7006) AUTHORS Tisza,M., Buck,C., Pastrana,D., Welch,N. and Peretti,A. TITLE Uncovering a Universe of Circular DNA Viruses in Animal Metagenomes JOURNAL Unpublished REFERENCE 2 (bases 1 to 7006) AUTHORS Tisza,M., Buck,C., Pastrana,D., Welch,N. and Peretti,A. TITLE Direct Submission JOURNAL Submitted (19-JUL-2018) Lab of Cellular Oncology, National Cancer Institute, 37 Convent Dr., Room 4118, Bethesda, MD 20814, USA COMMENT ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.11.0 Genome Coverage :: 4.68x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..7006 /organism="Inoviridae sp." /mol_type="genomic DNA" /isolate="ctii000" /isolation_source="squid tissue" /db_xref="taxon:2219103" /environmental_sample /country="USA" /collection_date="01-Jun-2017" /note="genome binned from sequencing reads available in SRX4043888; metagenomic; derived from metagenome: animal metagenome" CDS 1..1473 /inference="protein motif:CDD:237940" /note="autotransport protein MisL; Provisional" /codon_start=1 /transl_table=11 /product="putative autotransport protein" /protein_id="AXQ65970.1" /translation="MQLFKKYIILFFLITASFSAFSSQYLCQVQGAHSAYSLSPGQVI DFHAFQPLPGHRKSQYFPSTIYYSIQEGYGVNNSTVLSCNRVESCPSGTQLNESGVCE EEKICEADLNLGQVSWSRLVHGMRPSFCAAGCLSRPKDIVCTDDSCSATAVTIGQKCE QGQDDGIYPTDPNEPDPDEPVGPPHIPDPNEPDPTDPTQPHQPTDPTKPIEGGGGVVA NPSLPPVNPNPTNPLPDPTAPDNGDVVAAVVNMNRDMNKAMDNLALSVNKSSADTLQM INAGTEGVKAQIAQLENTQIQIYENEKALMLALNSDVVNAVNSVGSAVGGLGDSISSA INESIGESMGAVSDSIAGLTEGVAGLGDSLGSINEGVAGIGETLDALANFDSSGVTIC GEGPCPEGFYKSQYNDGFAGVFDENFNLMKDIVTQGVVEVFGTIDLSNAAPPSFCMTL WMYGNFCFTDHINLDWIFTFIRAAFMFTTIFYSRKLIIGG" CDS 1475..1792 /inference="protein motif:CDD:133945" /codon_start=1 /transl_table=11 /product="putative minor coat protein" /protein_id="AXQ65971.1" /translation="MFQWIKDIYQKLLDLLYMIYISLRDILFDIPLYVFDQIFKVAGR AMQAVLQMFKPFDLSNYLTFIPPEVSWVLSMIGLPQCLAIIASAIALRLILQVIPFTR LGS" CDS 1795..2970 /inference="protein motif:CDD:222783" /codon_start=1 /transl_table=11 /product="putative assembly protein" /protein_id="AXQ65972.1" /translation="MIYCISGRPRSGKSYESVVYHIIPAIKSGRKVITNVTLNIDWFV KLFGPEVKSLIQIVDGQLNEFGKMNRPFSCIADYMTDWRDDQNRGPLFVIDEAHMVLP TRLNDAKILEFYSLHGHYGLDIILLTQNLRKLHRDIKDMIEMTYYCAKNTAFGSDKTY TKKVRIGATTEVVNEEIRKYKEHYFPAYQSHTQSSGSVAEAMANDIKPIWKRWPFYGA AIFLLIGPAILIYASLSKDEPKAVQSKNEIKAQVQSQAQASDVSVPDDSQQTVQVRDS RTSRKKVDFGPLNDYDIFATGISQQIAYHTKSGVYQVNYDETFKKVHISVYSKARKLF TVDHLQLSRMGYEFQELGDCVYKATWNDESRIITCIKDEDIFLDVDSPLSSVPVVSI" CDS 2660..2926 /inference="similar to AA sequence:UniProtKB:A0A0B1RRZ0_OESDE" /codon_start=1 /transl_table=11 /product="battenin" /protein_id="AXQ65964.1" /translation="MTTTSLLLAYHSKLPTTLNPVFTKSTMTKLLRKCIFLFTQRRVS SLQLIIFNCHEWVTSSKNLETAFIKQRGMMKAGLLLVSKMKIFS" CDS 3361..3654 /note="No HHBLITS hits" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AXQ65965.1" /translation="MPDDKKGCSAFASCTLSEPRIVIRGESLTPYTPILKSGFCFSHL GALFFYFINLAITLAYFSSLALVFKSSLQAISTNAAPMIICCADSICPLGNSR" CDS complement(3507..3875) /inference="protein motif:CDD:222820" /codon_start=1 /transl_table=11 /product="putative transcription regulator" /protein_id="AXQ65975.1" /translation="MKYYEMTKNYVFRELECGLSIKDTAELCFKSVRTVKEWDKGKEI PKECKRLMRMYRGHELNKSEKWKGFKMRSDHLELPSGQMLSAQQIIMGAALVEIACSE DLKTRARLLKYARVIAKLMK" CDS complement(3835..4287) /inference="similar to AA sequence:INSD:KOH12308.1" /codon_start=1 /transl_table=11 /product="antirepressor" /protein_id="AXQ65969.1" /translation="MYTNKLIDAYKDQMNYVQYKQIAHDLDVSPQMLTDIRKGRAYLK ENQAIMMAEAVGEDKEKAMIGLAMDKAKSYEAREAWANIAKKFNGLGLTTITMAYVGF AVTFLDVNECALSALMLSLAYQQLKNEASIFRGFMNEILRNDKKLCFS" CDS 4465..4680 /inference="similar to AA sequence:UniProtKB:X1WUC8_ACYPI" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AXQ65966.1" /translation="MNIHTIQVSQKYFDLICAHKLDTKILHVSQSPELGQQIQFTDGF DFSPVYQCNRLEHSGSGCVVGFELAGA" CDS 4683..4898 /inference="similar to AA sequence:UniProtKB:R7L196_9FIRM" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AXQ65967.1" /translation="MTNQCPKKRPIYFEHHTDGYWCSIDGQPEYFKAKHEMYLYACED DRELIEITFENERELRNSGAFEVLHHE" CDS 4891..6144 /inference="protein motif:CDD:225497" /note="putative phage replication protein RstA" /codon_start=1 /transl_table=11 /product="putative replication protein" /protein_id="AXQ65973.1" /translation="MSKQHCIIDYVSFSGTPVLLQRCKEMAKERYLFSDSTFQFQSAH PLAVAQREQKKIAYFAESLAVALGCTEEYNYANRDLYFASLDKKLADCDIEIAQDCSF KECYDQLISNIGIDMLDTLCHYEIESFVELLNDEITYAGNHWTLQKRGGYSGYSHSAN LLCNGTQAGKVAWGASNFGFYVSFSGTGCAAIKLDVLHKCLNQMPDTKITRVDIAYDD LHGVVSVPELRERYENGDFITRGAPPSYCYIESGTLVPNDVTKKYGSVPSKGRTLYVG NRENGKMFRGYEKGLQLDSEEYPDWVRHEVQIGNKSRVIPLDVLINPDSYFAGAYTVL ASILSEVQPIRICISRIISNAQLDKYLKIAKTQYGKFVNFLNLIYDNPETVIKKMTSG LTINDIPDRLNIPSWSDNRGDLQNG" CDS 6137..6448 /inference="protein motif:CDD:284799" /note="CTX phage RstB protein" /codon_start=1 /transl_table=11 /product="RstB protein" /protein_id="AXQ65974.1" /translation="MGKLTVTVIGCEHSQGLAKANDKPYNFAQVSYLKQNQGWNSTKG SCNAFGLKVEKISMLTSAALLNEFQKLANNFPLLCELSLDADPENPQRNIVVDIKPLD K" CDS 6461..6706 /inference="similar to AA sequence:INSD:PMT92645.1" /codon_start=1 /transl_table=11 /product="single-stranded DNA-binding protein" /protein_id="AXQ65968.1" /translation="MSVCTYPNSEGFLVAFPNDDLETCQGYIMLTHDDYNYMMKYTRL DAADISSAFAFGFFAVLLTSWGLTYGIKVAQKLIKLL" ORIGIN 1 atgcaattat tcaaaaaata cataatttta ttctttttga taacagcgtc tttttctgct 61 ttttcttctc agtatctttg tcaagttcaa ggggctcact cggcatactc tttgtcccca 121 ggtcaagtta tagactttca tgcttttcag cctttgcccg gtcaccgaaa aagccagtac 181 tttccatcaa cgatatatta tagtattcaa gaaggatatg gtgtaaataa ttctactgta 241 ttatcttgta atcgcgttga aagttgtcca tccggtacac aactcaatga gtccggtgtt 301 tgcgaagagg aaaaaatctg tgaggctgac ttaaatttag gtcaagtctc ttggagtcgt 361 ttagttcacg gtatgcgccc ctcgttttgt gctgctggtt gtttatctcg accaaaggat 421 attgtatgta ctgatgattc atgctcagca acggctgtaa ccattggtca aaaatgtgaa 481 cagggtcaag atgatggtat atatccgact gacccaaacg aacccgaccc cgatgaacct 541 gtcgggcctc cgcatattcc agatccaaac gaacctgacc caactgaccc aactcaacct 601 catcaaccaa ctgacccgac aaagccgatt gagggtggcg gcggagttgt tgctaatcca 661 agtcttcctc ccgtcaatcc aaatccgact aatccattgc ctgatccgac agctcctgat 721 aacggtgatg ttgtagctgc cgttgttaat atgaatcgtg atatgaataa ggccatggat 781 aatttagcgc tcagcgttaa caaatcgtcc gccgatactt tacagatgat taatgctggc 841 actgagggcg tcaaagctca gattgcacaa ttagaaaata ctcaaataca aatatatgaa 901 aacgaaaaag cattgatgct tgcgcttaat tcagatgttg ttaatgctgt taattcggtc 961 ggttctgctg ttggcggctt aggtgattca atatccagcg caattaatga atccattggt 1021 gaatcaatgg gggctgtgtc tgattcaata gctggattga ctgagggtgt tgctggtctt 1081 ggtgattcgc tgggttcaat taatgaaggg gtcgcgggca taggtgaaac acttgatgct 1141 cttgctaact ttgattccag cggtgtgact atatgcggtg aaggtccttg tccagaaggc 1201 ttttataagt ctcaatataa tgatggtttt gctggcgtct tcgatgaaaa ctttaattta 1261 atgaaagata ttgtcactca gggtgttgtc gaggttttcg gtacaattga tttgtccaat 1321 gctgccccgc catcattttg tatgacgctt tggatgtacg gtaatttctg ctttacagac 1381 cacattaatt tagattggat attcacgttt atacgcgctg catttatgtt cactactata 1441 ttttattcac gcaaattaat aataggtggt taatatgttt caatggataa aagatattta 1501 tcagaaatta ctagatttgc tttacatgat atatataagc ctgagagata tattattcga 1561 tatacctctt tacgtttttg accagatatt taaggttgct ggtcgagcaa tgcaggctgt 1621 tttgcaaatg tttaaacctt ttgatttatc aaattactta acctttatac cgccggaagt 1681 ttcttgggta ttatcaatga ttggtttacc gcagtgctta gcaattattg ctagtgcaat 1741 agcgttacgt ttaattttgc aagttatacc gttcacacgt ttggggtctt aattatgatt 1801 tattgtatat ctggacgccc acgctccgga aaatcgtatg aatcggtggt ttatcacatt 1861 attccagcga ttaaatcagg gcgtaaagtt atcactaatg tgactttaaa tattgattgg 1921 ttcgttaagc ttttcggtcc agaagtgaaa agcttaatac agatagttga tggtcaatta 1981 aatgaattcg gtaaaatgaa tcgaccattt tcgtgtattg ctgattacat gacagattgg 2041 cgtgacgacc aaaaccgtgg gccgcttttc gtcattgatg aagcgcacat ggtattaccg 2101 acacgattga atgacgctaa gatattagag ttttactcgc tccacggtca ctacggatta 2161 gatattattc ttttaactca gaatttacgt aagttgcacc gtgatataaa agatatgata 2221 gaaatgacgt attactgtgc taagaatacg gcgttcggca gtgataaaac ttacacaaaa 2281 aaagttcgca tcggtgcgac tacagaagtc gtcaacgaag aaataaggaa gtataaggaa 2341 cattactttc ctgcttatca aagccacact caatcaagcg gctctgttgc tgaagcgatg 2401 gcaaatgaca taaaaccaat ctggaaacgc tggccgtttt acggcgcagc gatttttttg 2461 cttattggcc ctgccatact tatctatgct tcattatcaa aagatgaacc aaaagcagtt 2521 caatcaaaaa acgagattaa agcacaagtt caatcacagg ctcaggcttc cgatgtatca 2581 gttcctgacg actcacagca aactgttcaa gttagggatt ctagaacatc gagaaagaaa 2641 gtagattttg gcccgctaaa tgactacgac atctttgcta ctggcatatc acagcaaatt 2701 gcctaccaca ctaaatccgg tgtttaccaa gtcaactatg acgaaacttt taagaaagtg 2761 catatttctg tttactcaaa ggcgcgtaag ctctttacag ttgatcatct tcaactgtca 2821 cgaatgggtt acgagttcca agaacttgga gactgcgttt ataaagcaac gtggaatgat 2881 gaaagcagga ttattacttg tatcaaagat gaagatattt tcttagacgt tgatagccct 2941 ctaagttcag ttcctgtcgt tagcatataa catcgatttg cggagggccc cgtgtttcgt 3001 cacgggatgg ggccgtcaaa tcgatgttgt ccaatttaac ttgatataat ttattatttg 3061 aatcaaatca cataattata atgtcaagtc ttgacatcta aaccatgtga tttatatcac 3121 caattaaatc atgctatata tcgcaaaatt aaaatgcaac aatgaacaaa gccccgcagg 3181 gacagcgaag cggtgaccgt aacgttaggt tcaacgatcg ccgggttagc gctacggcat 3241 agtcacattg cttctagcac tcgatgcagt tcgcgactaa tatcaagcgc tctctccggc 3301 cttggggtcg tgggcttcca acgtcaaaat aacaatgcct ccgccctgct aagccgaaaa 3361 atgccggacg ataaaaaggg atgttcagca tttgccagtt gtaccctcag cgaaccccgt 3421 atagtaatac ggggtgaaag tctcaccccg tacacaccta ttttaaaatc aggcttttgc 3481 ttttcgcacc ttggtgcgct gttcttttac ttcatcaatt tagcgattac tcttgcatac 3541 tttagtagtc tagctctagt ctttaaatct tcgctgcaag caatctctac caatgcagcc 3601 cccatgatta tttgttgcgc tgacagcatt tgtccgcttg gtaattcaag atgatcactt 3661 ctcattttga agcctttcca tttttctgat ttgtttaatt cgtgacctct atacatcctc 3721 attagtcttt tacactcttt tggtatctct tttcctttgt cccactcttt gacagtcctc 3781 acacttttaa aacaaagttc ggcagtatct tttatgctta atccgcactc taattcacga 3841 aaaacataat tttttgtcat ttcgtagtat ttcattcatg aagcctctaa atatagaagc 3901 ttcattttta agttgttgat atgcaagact taacataagc gctgataatg cgcactcatt 3961 aacgtctaaa aaagtcactg caaatcccac gtaagccatt gttattgttg ttaatcctag 4021 cccgttaaac ttttttgcaa tgttcgccca ggcttctcgc gcttcgtagc ttttcgcttt 4081 atccatcgct aagcctatca ttgctttttc tttgtcctca ccaacggctt ccgccatcat 4141 aattgcttga ttttccttaa ggtacgctcg tccttttctt atgtccgtta gcatttgtgg 4201 gcttacatct aagtcatgag ctatttgctt gtattgaaca tagttcattt ggtctttata 4261 ggcgtctatc agcttgtttg tgtacatttc gctgctcctc aattttccat ctttctacga 4321 ttctagcgca tttatacgtt aatcatcgtg tttacattat gatgattgtc gtattaactg 4381 tatgtcaatt gtcgtactag gccgcttcgg tcgctcccta cagcactggg gtggccgttt 4441 caatatgtat ctgtaggggg ttacatgaac attcacacaa tccaagtctc acaaaaatat 4501 tttgatttaa tttgtgctca taaactcgat acgaaaattt tgcacgtctc acaatctcct 4561 gagcttggtc aacaaatcca attcactgac ggttttgatt ttagccctgt ttatcagtgc 4621 aatcggcttg agcattccgg ttctggatgt gtcgtcggtt ttgagcttgc gggggcttaa 4681 tcatgactaa ccaatgtccc aaaaagcgcc ctatttactt cgagcatcac accgatggct 4741 attggtgctc aattgatggt caacctgagt attttaaggc aaagcacgaa atgtacttat 4801 acgcttgtga agatgaccgt gaactgattg aaattacatt tgagaacgaa cgtgagctaa 4861 gaaactcagg tgcattcgag gtgttgcatc atgagtaaac agcattgcat cattgattat 4921 gtgagtttta gcggtacgcc cgttcttctc cagcgctgca aagaaatggc aaaggagcgt 4981 tatctatttt ctgattcaac gtttcagttt cagtctgcac atcccttggc cgttgctcaa 5041 cgtgagcaga aaaaaatagc ttattttgct gaatccttag cggttgctct cggttgtacc 5101 gaggaatata actacgccaa tcgtgatttg tactttgcat cactagataa aaaactcgcc 5161 gattgtgaca ttgaaattgc tcaagattgc agtttcaaag agtgttacga ccaacttata 5221 tcgaacattg gtatcgatat gctcgatact ctttgtcatt atgaaatcga gtcatttgtc 5281 gaactgctta acgatgaaat cacgtatgca ggcaatcact ggacgctaca aaagcgcggc 5341 ggttactctg gttattccca tagtgctaac cttttatgta acggtactca agctggcaaa 5401 gttgcatggg gtgcgtctaa cttcggtttt tatgtgtcgt tctctggcac tggctgcgct 5461 gccattaagc ttgatgtatt gcataagtgt ttaaatcaaa tgcctgacac caaaattacc 5521 cgtgttgata ttgcttatga cgatttgcat ggtgtggtat ccgttcctga gctacgcgaa 5581 cgttatgaaa atggtgattt tattactcgc ggtgctccac ccagttattg ttatattgag 5641 tcaggtactc ttgtacctaa tgatgttaca aagaaatacg gttctgtacc aagtaaaggt 5701 cgtactcttt atgtgggtaa tcgtgaaaac gggaaaatgt tccgaggtta tgaaaaaggg 5761 ctacaacttg attcggaaga gtatccggat tgggttcgtc atgaagttca gattggtaat 5821 aagagtcgcg ttattccact ggatgtatta attaatcctg attcttattt cgcaggcgct 5881 tacactgtcc ttgcttcgat attaagtgaa gtgcaaccaa tacgaatttg tatatctaga 5941 attatttcaa atgcacagtt agataagtat ttaaaaatag caaagaccca gtacggaaag 6001 tttgtaaact ttcttaattt aatctatgac aatccagaaa ccgttatcaa gaaaatgaca 6061 tctggactca ctattaacga tataccggat aggttaaaca taccatcttg gtcagacaac 6121 agaggggact tacaaaatgg gtaaattaac tgtaacagtc attggatgtg aacattctca 6181 aggtttagcc aaggctaacg acaaacccta caactttgct caagtttcat atttgaaaca 6241 aaatcagggt tggaattcaa ccaaaggttc ttgtaatgct ttcggcttaa aagtcgaaaa 6301 aatttcaatg cttactagcg ctgctttatt gaatgagttt caaaagctgg ctaataattt 6361 cccactgctt tgcgaattgt cgctagatgc agaccctgaa aacccacaac gtaatattgt 6421 tgtcgatatt aaacctctag ataaatagag aacgaattct atgtctgtgt gtacttatcc 6481 aaatagtgaa ggtttcttgg ttgcgtttcc gaacgatgac ttagaaacgt gtcaaggcta 6541 tatcatgtta actcatgacg actacaacta tatgatgaaa tatacacggc tggatgctgc 6601 cgatatatca agcgcttttg cgttcggctt tttcgctgtg ctgcttacta gttggggctt 6661 aacctacggt attaaagtcg cacagaaatt aattaaatta ctttaacgtt aattggagat 6721 ataactatgg acgctatttt tgcagctgta gattttacca ctgttgccgc tttcgttggt 6781 ggcgctggcg taacaatcat cggaattgct atggcattta aaggcatttc ccttggcaaa 6841 cgcgccgtta ataaagcgta attggatgac tgagtatgct tattgccctt tatgatattc 6901 agttggttgt ttatgtccta ttgggtggct tatcgggttt agtagttgct caaaatttca 6961 atgaactata agggggcttc ggcccctttt taatttggta acaaac //