locus-tag	class	description
IFY67_00004	COG0187	DNA topoisomerase II activity
IFY67_00005	COG0561	phosphatase activity
IFY67_00009	COG2186	Transcriptional regulator
IFY67_00010	COG3734	2-keto-3-deoxy-galactonokinase
IFY67_00011	COG0800	Aldolase
IFY67_00013	COG2271	Major facilitator Superfamily
IFY67_00015	COG0823	Involved in the tonB-independent uptake of proteins
IFY67_00016	COG5645	(Lipo)protein
IFY67_00019	COG3645	SOS response
IFY67_00022	COG2188	Transcriptional regulator
IFY67_00025	COG2149	membrane
IFY67_00027	COG0641	radical SAM
IFY67_00029	COG2610	gluconate transmembrane transporter activity
IFY67_00030	COG0583	DNA-binding transcription factor activity
IFY67_00031	COG2814	Major facilitator Superfamily
IFY67_00036	COG0028	Belongs to the TPP enzyme family
IFY67_00037	COG0440	acetolactate synthase activity
IFY67_00038	COG2197	response regulator
IFY67_00040	COG2271	Major facilitator Superfamily
IFY67_00049	COG2188	Transcriptional regulator
IFY67_00055	COG4580	involved in the transport of maltose and maltodextrins
IFY67_00056	COG1447	Phosphotransferase system cellobiose-specific component IIA
IFY67_00057	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
IFY67_00057	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
IFY67_00059	COG1609	Transcriptional regulator
IFY67_00061	COG3384	dioxygenase
IFY67_00062	COG3384	dioxygenase
IFY67_00063	COG0583	DNA-binding transcription factor activity
IFY67_00064	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
IFY67_00065	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
IFY67_00066	COG2828	Protein conserved in bacteria
IFY67_00069	COG0697	spore germination
IFY67_00070	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
IFY67_00070	COG1263	PTS System
IFY67_00071	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
IFY67_00071	COG1263	PTS System
IFY67_00073	COG2814	Major facilitator Superfamily
IFY67_00075	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
IFY67_00080	COG0583	DNA-binding transcription factor activity
IFY67_00085	COG1464	Belongs to the NlpA lipoprotein family
IFY67_00088	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
IFY67_00090	COG1064	alcohol dehydrogenase
IFY67_00108	COG0582	viral genome integration into host DNA
IFY67_00110	COG2211	Major facilitator Superfamily
IFY67_00111	COG1501	Belongs to the glycosyl hydrolase 31 family
IFY67_00113	COG1486	melibiose metabolic process
IFY67_00114	COG1263	PTS System
IFY67_00114	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
IFY67_00115	COG2982	Protein involved in outer membrane biogenesis
IFY67_00116	COG2233	PERMEase
IFY67_00117	COG0786	glutamate:sodium symporter activity
IFY67_00120	COG3074	FtsZ-dependent cytokinesis
IFY67_00121	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
IFY67_00126	COG3152	Membrane
IFY67_00128	COG1494	fructose-1,6-bisphosphatase
IFY67_00129	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
IFY67_00130	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
IFY67_00131	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
IFY67_00135	COG2860	membrane
IFY67_00137	COG2169	Transcriptional regulator
IFY67_00137	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
IFY67_00138	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
IFY67_00139	COG1561	YicC-like family, N-terminal region
IFY67_00142	COG1131	(ABC) transporter
IFY67_00144	COG0842	Transport permease protein
IFY67_00150	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
IFY67_00157	COG1519	Transferase
IFY67_00158	COG1216	Glycosyl transferase, family 2
IFY67_00159	COG0438	transferase activity, transferring glycosyl groups
IFY67_00161	COG0859	PFAM glycosyl transferase family 9
IFY67_00166	COG0859	PFAM glycosyl transferase family 9
IFY67_00169	COG0156	8-amino-7-oxononanoate synthase activity
IFY67_00171	COG0463	Glycosyl transferase, family 2
IFY67_00172	COG2861	carbohydrate metabolic process
IFY67_00173	COG4942	peptidase
IFY67_00175	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
IFY67_00176	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
IFY67_00181	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
IFY67_00183	COG2186	Transcriptional regulator
IFY67_00187	COG3722	fumarate hydratase activity
IFY67_00191	COG0625	glutathione transferase activity
IFY67_00193	COG3276	selenocysteine insertion sequence binding
IFY67_00194	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
IFY67_00195	COG3977	Valine--pyruvate aminotransferase
IFY67_00196	COG0366	Alpha amylase catalytic
IFY67_00197	COG2992	FlgJ-related protein
IFY67_00198	COG2207	Transcriptional regulator
IFY67_00198	COG1609	Transcriptional regulator
IFY67_00199	COG2207	Transcriptional regulator
IFY67_00199	COG1609	Transcriptional regulator
IFY67_00200	COG4214	carbohydrate transport
IFY67_00202	COG4213	ABC transporter substrate-binding protein
IFY67_00205	COG4682	membrane
IFY67_00206	COG4682	membrane
IFY67_00207	COG4682	membrane
IFY67_00208	COG3274	enterobacterial common antigen metabolic process
IFY67_00212	COG2963	transposase activity
IFY67_00214	COG2801	Transposase and inactivated derivatives
IFY67_00219	COG1278	Cold shock
IFY67_00220	COG2944	sequence-specific DNA binding
IFY67_00221	COG2814	Major facilitator Superfamily
IFY67_00225	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
IFY67_00227	COG1609	Transcriptional regulator
IFY67_00228	COG2885	chlorophyll binding
IFY67_00229	COG0243	molybdopterin cofactor binding
IFY67_00230	COG0456	acetyltransferase
IFY67_00231	COG2818	Glycosylase
IFY67_00232	COG5571	outer membrane autotransporter
IFY67_00233	COG2223	nitrite transmembrane transporter activity
IFY67_00238	COG0747	negative chemotaxis
IFY67_00239	COG0601	transmembrane transport
IFY67_00240	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
IFY67_00241	COG0444	Belongs to the ABC transporter superfamily
IFY67_00242	COG0444	Belongs to the ABC transporter superfamily
IFY67_00243	COG4608	Belongs to the ABC transporter superfamily
IFY67_00245	COG2894	cell division
IFY67_00246	COG1215	transferase activity, transferring glycosyl groups
IFY67_00249	COG1215	transferase activity, transferring glycosyl groups
IFY67_00250	COG0457	Tetratricopeptide repeat
IFY67_00253	COG2194	sulfuric ester hydrolase activity
IFY67_00259	COG1215	transferase activity, transferring glycosyl groups
IFY67_00260	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
IFY67_00261	COG3118	belongs to the thioredoxin family
IFY67_00261	COG0457	Tetratricopeptide repeat
IFY67_00262	COG2200	EAL domain
IFY67_00262	COG2199	diguanylate cyclase activity
IFY67_00264	COG0612	Peptidase, M16
IFY67_00266	COG2982	Protein involved in outer membrane biogenesis
IFY67_00267	COG0477	Major facilitator Superfamily
IFY67_00268	COG1295	ribonuclease BN
IFY67_00269	COG0583	DNA-binding transcription factor activity
IFY67_00270	COG0583	DNA-binding transcription factor activity
IFY67_00271	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_00272	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
IFY67_00274	COG1454	alcohol dehydrogenase
IFY67_00276	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
IFY67_00277	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
IFY67_00278	COG0671	phosphoesterase, PA-phosphatase related
IFY67_00280	COG0339	signal peptide processing
IFY67_00283	COG0589	response to stress
IFY67_00285	COG0306	phosphate transporter
IFY67_00286	COG2081	HI0933 family
IFY67_00287	COG2239	Acts as a magnesium transporter
IFY67_00289	COG1124	(ABC) transporter
IFY67_00291	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
IFY67_00292	COG0601	transmembrane transport
IFY67_00293	COG0747	negative chemotaxis
IFY67_00295	COG3479	Phenolic acid decarboxylase
IFY67_00303	COG0628	permease
IFY67_00304	COG0477	Major facilitator Superfamily
IFY67_00306	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
IFY67_00309	COG3714	YhhN family
IFY67_00311	COG3776	membrane
IFY67_00312	COG0742	ribosomal rna small subunit methyltransferase
IFY67_00313	COG0552	protein localization to endoplasmic reticulum
IFY67_00314	COG2884	Cell division ATP-binding protein ftsE
IFY67_00315	COG2177	Part of the ABC transporter FtsEX involved in
IFY67_00318	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
IFY67_00320	COG0683	leucine binding
IFY67_00322	COG0683	leucine binding
IFY67_00323	COG0559	Belongs to the binding-protein-dependent transport system permease family
IFY67_00330	COG1175	transmembrane transport
IFY67_00334	COG0584	glycerophosphoryl diester phosphodiesterase
IFY67_00336	COG0405	Gamma-glutamyltransferase
IFY67_00337	COG1247	-acetyltransferase
IFY67_00339	COG0673	inositol 2-dehydrogenase activity
IFY67_00340	COG1741	Belongs to the pirin family
IFY67_00341	COG1609	Transcriptional regulator
IFY67_00342	COG3265	gluconokinase activity
IFY67_00343	COG2610	gluconate transmembrane transporter activity
IFY67_00344	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
IFY67_00350	COG0058	SHG alpha-glucan phosphorylase activity
IFY67_00353	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
IFY67_00356	COG1349	DNA-binding transcription factor activity
IFY67_00358	COG0058	SHG alpha-glucan phosphorylase activity
IFY67_00359	COG1640	4-alpha-glucanotransferase
IFY67_00360	COG2610	gluconate transmembrane transporter activity
IFY67_00362	COG1040	competence protein
IFY67_00367	COG1918	ferrous iron import across plasma membrane
IFY67_00368	COG2183	response to ionizing radiation
IFY67_00369	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
IFY67_00374	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
IFY67_00375	COG1011	Hydrolase
IFY67_00377	COG0494	nUDIX hydrolase
IFY67_00378	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
IFY67_00382	COG4796	Type ii and iii secretion system protein
IFY67_00386	COG3266	domain, Protein
IFY67_00387	COG0338	D12 class N6 adenine-specific DNA methyltransferase
IFY67_00388	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
IFY67_00393	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
IFY67_00395	COG0402	S-adenosylhomocysteine deaminase activity
IFY67_00396	COG0738	Major facilitator superfamily
IFY67_00401	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
IFY67_00402	COG1289	transmembrane transporter activity
IFY67_00404	COG1765	OsmC-like protein
IFY67_00405	COG3954	Phosphoribulokinase
IFY67_00407	COG0429	hydrolase of the alpha beta-hydrolase fold
IFY67_00408	COG0488	(ABC) transporter
IFY67_00411	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
IFY67_00412	COG1047	Peptidyl-prolyl cis-trans
IFY67_00414	COG0545	Peptidyl-prolyl cis-trans isomerase
IFY67_00415	COG2964	Protein conserved in bacteria
IFY67_00426	COG0051	transcription antitermination factor activity, RNA binding
IFY67_00431	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
IFY67_00434	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
IFY67_00447	COG0201	protein transport
IFY67_00450	COG0202	RNA polymerase activity
IFY67_00453	COG0789	Transcriptional regulator
IFY67_00454	COG3036	rescue of stalled ribosome
IFY67_00460	COG0758	DNA mediated transformation
IFY67_00462	COG0551	DNA topoisomerase type I activity
IFY67_00466	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
IFY67_00473	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
IFY67_00474	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
IFY67_00475	COG1309	transcriptional regulator
IFY67_00479	COG4145	pantothenate transmembrane transporter activity
IFY67_00480	COG4145	pantothenate transmembrane transporter activity
IFY67_00481	COG3924	membrane
IFY67_00482	COG0439	Biotin carboxylase
IFY67_00483	COG0511	ligase activity, forming carbon-carbon bonds
IFY67_00487	COG2199	diguanylate cyclase activity
IFY67_00487	COG2200	EAL domain
IFY67_00488	COG1077	Cell shape determining protein MreB Mrl
IFY67_00489	COG1792	Involved in formation and maintenance of cell shape
IFY67_00490	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
IFY67_00492	COG1530	ribonuclease E activity
IFY67_00493	COG3164	Protein of unknown function
IFY67_00494	COG0312	modulator of DNA gyrase
IFY67_00495	COG0583	DNA-binding transcription factor activity
IFY67_00498	COG1289	transmembrane transporter activity
IFY67_00499	COG2732	(Barnase) inhibitor
IFY67_00504	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
IFY67_00505	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
IFY67_00506	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
IFY67_00507	COG3105	Protein conserved in bacteria
IFY67_00508	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
IFY67_00511	COG0625	glutathione transferase activity
IFY67_00512	COG2969	positive regulation of protein catabolic process
IFY67_00514	COG0493	'glutamate synthase
IFY67_00515	COG0067	glutamate synthase
IFY67_00515	COG0070	glutamate synthase
IFY67_00515	COG0069	glutamate synthase activity
IFY67_00516	COG1242	4 iron, 4 sulfur cluster binding
IFY67_00517	COG2271	Major facilitator Superfamily
IFY67_00518	COG2271	Major facilitator Superfamily
IFY67_00519	COG1063	alcohol dehydrogenase
IFY67_00520	COG1312	Catalyzes the dehydration of D-mannonate
IFY67_00521	COG0784	Response regulator, receiver
IFY67_00521	COG5002	protein histidine kinase activity
IFY67_00521	COG2198	Histidine kinase
IFY67_00522	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
IFY67_00523	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
IFY67_00524	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
IFY67_00526	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
IFY67_00527	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
IFY67_00528	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
IFY67_00529	COG1137	ATPase activity
IFY67_00530	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
IFY67_00531	COG3117	lipopolysaccharide transmembrane transporter activity
IFY67_00532	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
IFY67_00534	COG0530	calcium, potassium:sodium antiporter activity
IFY67_00535	COG1127	ABC transporter
IFY67_00536	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
IFY67_00537	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
IFY67_00538	COG2854	intermembrane phospholipid transfer
IFY67_00539	COG3113	response to antibiotic
IFY67_00540	COG5007	Belongs to the BolA IbaG family
IFY67_00542	COG3423	Transcriptional regulator
IFY67_00543	COG0142	geranyltranstransferase activity
IFY67_00546	COG0697	spore germination
IFY67_00548	COG2027	D-alanyl-D-alanine carboxypeptidase
IFY67_00550	COG1534	Rna-binding protein
IFY67_00552	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
IFY67_00553	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
IFY67_00555	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
IFY67_00563	COG0195	Participates in both transcription termination and antitermination
IFY67_00571	COG0814	amino acid
IFY67_00576	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
IFY67_00586	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
IFY67_00587	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
IFY67_00588	COG0826	peptidase U32
IFY67_00589	COG0826	peptidase U32
IFY67_00590	COG3154	lipid carrier protein
IFY67_00591	COG3153	acetyltransferase
IFY67_00594	COG0693	protein deglycase activity
IFY67_00595	COG0702	epimerase
IFY67_00596	COG0701	Predicted permease
IFY67_00597	COG2823	Periplasmic or secreted lipoprotein
IFY67_00601	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
IFY67_00602	COG2721	sulfolactate sulfo-lyase activity
IFY67_00604	COG2271	Major facilitator Superfamily
IFY67_00606	COG2084	Dehydrogenase
IFY67_00607	COG1929	Belongs to the glycerate kinase type-1 family
IFY67_00612	COG1741	Belongs to the pirin family
IFY67_00613	COG0583	DNA-binding transcription factor activity
IFY67_00614	COG3152	Membrane
IFY67_00615	COG0435	Glutathione S-transferase
IFY67_00616	COG2259	Doxx family
IFY67_00618	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
IFY67_00619	COG4575	ribosome binding
IFY67_00620	COG1422	Protein of unknown function (DUF1090)
IFY67_00622	COG0586	Pfam SNARE associated Golgi protein
IFY67_00623	COG2186	Transcriptional regulator
IFY67_00624	COG2271	Major facilitator Superfamily
IFY67_00626	COG2721	sulfolactate sulfo-lyase activity
IFY67_00629	COG0861	Integral membrane protein TerC family
IFY67_00630	COG0673	inositol 2-dehydrogenase activity
IFY67_00631	COG1451	nucleotide metabolic process
IFY67_00635	COG0446	pyridine nucleotide-disulphide oxidoreductase
IFY67_00635	COG1902	pentaerythritol trinitrate reductase activity
IFY67_00636	COG0446	pyridine nucleotide-disulphide oxidoreductase
IFY67_00636	COG1902	pentaerythritol trinitrate reductase activity
IFY67_00646	COG1695	Transcriptional regulator
IFY67_00647	COG2375	cellular response to nickel ion
IFY67_00650	COG1461	Dihydroxyacetone kinase
IFY67_00651	COG2376	Dihydroxyacetone kinase
IFY67_00664	COG3039	Transposase
IFY67_00665	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
IFY67_00667	COG1061	Type III restriction enzyme res subunit
IFY67_00668	COG1002	Type II restriction enzyme, methylase subunits
IFY67_00669	COG4372	Transposase
IFY67_00671	COG3596	GTP binding
IFY67_00672	COG2378	regulation of single-species biofilm formation
IFY67_00674	COG2378	regulation of single-species biofilm formation
IFY67_00678	COG2003	Belongs to the UPF0758 family
IFY67_00687	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
IFY67_00688	COG0358	DNA primase activity
IFY67_00689	COG0828	Belongs to the bacterial ribosomal protein bS21 family
IFY67_00700	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
IFY67_00703	COG4991	sh3 domain protein
IFY67_00704	COG3025	triphosphatase activity
IFY67_00708	COG2960	long-chain fatty acid transporting porin activity
IFY67_00711	COG3384	dioxygenase
IFY67_00712	COG0754	glutathionylspermidine amidase activity
IFY67_00715	COG0494	nUDIX hydrolase
IFY67_00716	COG3151	Protein conserved in bacteria
IFY67_00717	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
IFY67_00718	COG3150	esterase
IFY67_00720	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
IFY67_00721	COG2249	NAD(P)H dehydrogenase (quinone) activity
IFY67_00722	COG0642	Histidine kinase
IFY67_00724	COG3111	PFAM Bacterial OB fold (BOF) protein
IFY67_00725	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
IFY67_00726	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
IFY67_00727	COG0204	Acyl-transferase
IFY67_00728	COG2132	Multicopper oxidase
IFY67_00729	COG1032	radical SAM domain protein
IFY67_00731	COG0656	L-ascorbic acid biosynthetic process
IFY67_00732	COG1979	alcohol dehydrogenase
IFY67_00733	COG2207	Transcriptional regulator
IFY67_00734	COG0586	Pfam SNARE associated Golgi protein
IFY67_00735	COG0626	cystathionine gamma-synthase activity
IFY67_00737	COG0848	biopolymer transport protein
IFY67_00738	COG2211	Major facilitator Superfamily
IFY67_00743	COG0625	glutathione transferase activity
IFY67_00745	COG0754	glutathionylspermidine amidase activity
IFY67_00746	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
IFY67_00752	COG0583	DNA-binding transcription factor activity
IFY67_00753	COG0626	cystathionine gamma-synthase activity
IFY67_00759	COG1811	Na channel or pump
IFY67_00760	COG1982	Orn Lys Arg decarboxylase major
IFY67_00761	COG2211	Major facilitator Superfamily
IFY67_00764	COG1194	a g-specific adenine glycosylase
IFY67_00767	COG3171	Protein conserved in bacteria
IFY67_00770	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
IFY67_00770	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
IFY67_00771	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
IFY67_00772	COG0635	Involved in the biosynthesis of porphyrin-containing compound
IFY67_00775	COG0762	integral membrane protein
IFY67_00776	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
IFY67_00777	COG2805	Type II/IV secretion system protein
IFY67_00781	COG0189	ligase activity
IFY67_00782	COG1385	rRNA (uridine-N3-)-methyltransferase activity
IFY67_00783	COG2356	endonuclease I
IFY67_00785	COG2814	Major facilitator Superfamily
IFY67_00789	COG0501	Belongs to the peptidase M48B family
IFY67_00790	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
IFY67_00793	COG0191	fructose-bisphosphate aldolase activity
IFY67_00794	COG0668	transmembrane transport
IFY67_00796	COG2968	Membrane
IFY67_00799	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
IFY67_00800	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
IFY67_00803	COG0006	proline dipeptidase activity
IFY67_00804	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
IFY67_00805	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
IFY67_00809	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_00810	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
IFY67_00814	COG2723	6-phospho-beta-galactosidase activity
IFY67_00815	COG1737	Transcriptional regulator
IFY67_00817	COG1272	protein, Hemolysin III
IFY67_00819	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
IFY67_00821	COG0716	FMN binding
IFY67_00822	COG4974	Belongs to the 'phage' integrase family
IFY67_00824	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
IFY67_00828	COG4942	peptidase
IFY67_00830	COG2814	Major facilitator Superfamily
IFY67_00833	COG0667	Aldo Keto reductase
IFY67_00841	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
IFY67_00842	COG1393	Belongs to the ArsC family
IFY67_00845	COG1538	Outer membrane efflux protein
IFY67_00846	COG1289	transmembrane transporter activity
IFY67_00849	COG3592	Divergent 4Fe-4S mono-cluster
IFY67_00850	COG2388	GCN5-related N-acetyl-transferase
IFY67_00852	COG3539	Fimbrial protein
IFY67_00853	COG3539	Fimbrial protein
IFY67_00854	COG3188	usher protein
IFY67_00855	COG3121	Chaperone
IFY67_00856	COG3539	Fimbrial protein
IFY67_00858	COG4974	Belongs to the 'phage' integrase family
IFY67_00859	COG0582	viral genome integration into host DNA
IFY67_00861	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
IFY67_00862	COG1846	Transcriptional regulator
IFY67_00863	COG0697	spore germination
IFY67_00874	COG0667	Aldo Keto reductase
IFY67_00875	COG0814	amino acid
IFY67_00878	COG0183	Belongs to the thiolase family
IFY67_00880	COG0823	Involved in the tonB-independent uptake of proteins
IFY67_00882	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_00883	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_00884	COG2814	Major facilitator Superfamily
IFY67_00891	COG3842	ATPase activity
IFY67_00892	COG0395	ABC-type sugar transport system, permease component
IFY67_00893	COG1175	transmembrane transport
IFY67_00894	COG1917	Cupin 2, conserved barrel domain protein
IFY67_00895	COG1794	racemase activity, acting on amino acids and derivatives
IFY67_00896	COG0583	DNA-binding transcription factor activity
IFY67_00898	COG1609	Transcriptional regulator
IFY67_00899	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
IFY67_00900	COG2723	6-phospho-beta-galactosidase activity
IFY67_00901	COG2186	Transcriptional regulator
IFY67_00903	COG1609	Transcriptional regulator
IFY67_00907	COG0667	Aldo Keto reductase
IFY67_00909	COG0861	Integral membrane protein TerC family
IFY67_00915	COG4795	General secretion pathway protein
IFY67_00917	COG4967	type IV pilus modification protein PilV
IFY67_00918	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
IFY67_00919	COG1025	Belongs to the peptidase M16 family
IFY67_00920	COG1074	ATP-dependent DNA helicase activity
IFY67_00921	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
IFY67_00923	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
IFY67_00923	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
IFY67_00924	COG0860	N-Acetylmuramoyl-L-alanine amidase
IFY67_00925	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
IFY67_00931	COG4656	Part of a membrane complex involved in electron transport
IFY67_00932	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_00932	COG1454	alcohol dehydrogenase
IFY67_00934	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_00935	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_00940	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
IFY67_00975	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
IFY67_00976	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
IFY67_00977	COG2166	iron-sulfur cluster assembly
IFY67_00978	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
IFY67_00980	COG0583	DNA-binding transcription factor activity
IFY67_00981	COG2363	Small membrane protein
IFY67_00983	COG1349	DNA-binding transcription factor activity
IFY67_00987	COG0738	Major facilitator superfamily
IFY67_00988	COG0235	Class ii aldolase
IFY67_00989	COG1454	alcohol dehydrogenase
IFY67_00992	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
IFY67_00995	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
IFY67_00997	COG2011	ABC-type metal ion transport system permease component
IFY67_00998	COG1464	Belongs to the NlpA lipoprotein family
IFY67_01000	COG0477	Major facilitator Superfamily
IFY67_01002	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
IFY67_01003	COG1760	l-serine dehydratase
IFY67_01004	COG0814	amino acid
IFY67_01005	COG1611	Belongs to the LOG family
IFY67_01008	COG3098	single-species biofilm formation
IFY67_01009	COG0564	pseudouridine synthase activity
IFY67_01010	COG0716	FMN binding
IFY67_01011	COG2271	Major facilitator Superfamily
IFY67_01012	COG4948	Mandelate Racemase Muconate Lactonizing
IFY67_01013	COG4948	Mandelate Racemase Muconate Lactonizing
IFY67_01014	COG1929	Belongs to the glycerate kinase type-1 family
IFY67_01015	COG3850	Histidine kinase
IFY67_01015	COG3437	response regulator, receiver
IFY67_01015	COG2205	protein histidine kinase activity
IFY67_01015	COG4999	Histidine kinase
IFY67_01017	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
IFY67_01018	COG3956	TIGRFAM MazG family protein
IFY67_01022	COG0602	queuosine metabolic process
IFY67_01023	COG0720	synthase
IFY67_01027	COG2234	aminopeptidase activity
IFY67_01039	COG4942	peptidase
IFY67_01039	COG1388	LysM domain
IFY67_01040	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
IFY67_01045	COG0163	prenyltransferase activity
IFY67_01046	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
IFY67_01051	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
IFY67_01052	COG4558	Periplasmic binding protein
IFY67_01053	COG3720	iron ion transport
IFY67_01057	COG0679	Auxin Efflux Carrier
IFY67_01060	COG1108	ABC-type Mn2 Zn2 transport systems permease components
IFY67_01061	COG1108	ABC-type Mn2 Zn2 transport systems permease components
IFY67_01062	COG1121	(ABC) transporter
IFY67_01064	COG1609	Transcriptional regulator
IFY67_01065	COG1940	carbohydrate kinase activity
IFY67_01066	COG1447	Phosphotransferase system cellobiose-specific component IIA
IFY67_01067	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
IFY67_01068	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
IFY67_01069	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
IFY67_01070	COG4580	involved in the transport of maltose and maltodextrins
IFY67_01074	COG2723	6-phospho-beta-galactosidase activity
IFY67_01076	COG0309	Hydrogenase expression formation protein (HypE)
IFY67_01077	COG0409	Hydrogenase expression formation protein
IFY67_01078	COG0298	carbon dioxide binding
IFY67_01079	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
IFY67_01082	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
IFY67_01083	COG0651	ATP synthesis coupled electron transport
IFY67_01084	COG0650	Formate hydrogenlyase subunit 4
IFY67_01085	COG0650	Formate hydrogenlyase subunit 4
IFY67_01086	COG3261	NADH dehydrogenase
IFY67_01086	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
IFY67_01087	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
IFY67_01088	COG3260	NADH ubiquinone oxidoreductase 20
IFY67_01090	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
IFY67_01092	COG2723	6-phospho-beta-galactosidase activity
IFY67_01093	COG1263	PTS System
IFY67_01093	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
IFY67_01094	COG1609	Transcriptional regulator
IFY67_01095	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
IFY67_01096	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
IFY67_01097	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
IFY67_01102	COG1349	DNA-binding transcription factor activity
IFY67_01103	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
IFY67_01104	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_01106	COG3732	PTS system glucitol sorbitol-specific
IFY67_01107	COG3730	PTS system glucitol sorbitol-specific
IFY67_01108	COG2951	lytic endotransglycosylase activity
IFY67_01109	COG1121	(ABC) transporter
IFY67_01110	COG1108	ABC-type Mn2 Zn2 transport systems permease components
IFY67_01112	COG1546	Belongs to the CinA family
IFY67_01116	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
IFY67_01122	COG2823	Periplasmic or secreted lipoprotein
IFY67_01123	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
IFY67_01124	COG1238	metal cluster binding
IFY67_01128	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
IFY67_01129	COG2814	Major facilitator Superfamily
IFY67_01130	COG1566	PFAM secretion protein HlyD family protein
IFY67_01131	COG1846	Transcriptional regulator
IFY67_01133	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
IFY67_01135	COG4176	ABC-type proline glycine betaine transport system permease component
IFY67_01138	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
IFY67_01140	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
IFY67_01141	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
IFY67_01142	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
IFY67_01143	COG4575	ribosome binding
IFY67_01146	COG2916	Histone family protein nucleoid-structuring protein H-NS
IFY67_01149	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
IFY67_01150	COG0640	Transcriptional regulator
IFY67_01152	COG0583	DNA-binding transcription factor activity
IFY67_01153	COG3284	Transcriptional regulator
IFY67_01155	COG3539	Fimbrial protein
IFY67_01156	COG3121	Chaperone
IFY67_01157	COG3188	usher protein
IFY67_01158	COG3188	usher protein
IFY67_01161	COG3188	usher protein
IFY67_01163	COG3539	Fimbrial protein
IFY67_01164	COG2197	response regulator
IFY67_01167	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_01169	COG0235	Class ii aldolase
IFY67_01171	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
IFY67_01178	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
IFY67_01179	COG3708	Transcriptional regulator
IFY67_01179	COG2207	Transcriptional regulator
IFY67_01185	COG2867	negative regulation of translational initiation
IFY67_01188	COG0497	DNA recombination
IFY67_01191	COG4536	flavin adenine dinucleotide binding
IFY67_01192	COG4137	Cytochrome C assembly protein
IFY67_01193	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
IFY67_01200	COG2885	chlorophyll binding
IFY67_01201	COG2199	diguanylate cyclase activity
IFY67_01203	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
IFY67_01204	COG0287	Prephenate dehydrogenase
IFY67_01204	COG1605	Chorismate mutase
IFY67_01206	COG0077	Prephenate dehydratase
IFY67_01206	COG1605	Chorismate mutase
IFY67_01207	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
IFY67_01208	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
IFY67_01211	COG0542	response to heat
IFY67_01216	COG0477	Major facilitator Superfamily
IFY67_01217	COG5544	Lipoprotein
IFY67_01218	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
IFY67_01220	COG3148	PFAM DTW domain containing protein
IFY67_01221	COG3118	belongs to the thioredoxin family
IFY67_01222	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
IFY67_01225	COG0513	Belongs to the DEAD box helicase family
IFY67_01227	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
IFY67_01229	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
IFY67_01230	COG3026	antisigma factor binding
IFY67_01231	COG3086	response to oxidative stress
IFY67_01233	COG0681	Belongs to the peptidase S26 family
IFY67_01237	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
IFY67_01239	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
IFY67_01240	COG1737	Transcriptional regulator
IFY67_01241	COG0560	Phosphoserine phosphatase
IFY67_01244	COG0047	phosphoribosylformylglycinamidine synthase activity
IFY67_01244	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
IFY67_01245	COG2205	protein histidine kinase activity
IFY67_01246	COG3170	Tfp pilus assembly protein FimV
IFY67_01247	COG2204	response regulator
IFY67_01248	COG0347	Belongs to the P(II) protein family
IFY67_01249	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
IFY67_01249	COG1017	nitric oxide dioxygenase activity
IFY67_01251	COG2259	Doxx family
IFY67_01252	COG1940	carbohydrate kinase activity
IFY67_01253	COG0457	Tetratricopeptide repeat
IFY67_01254	COG0477	Major facilitator Superfamily
IFY67_01254	COG2814	Major facilitator Superfamily
IFY67_01255	COG2017	converts alpha-aldose to the beta-anomer
IFY67_01256	COG2814	Major facilitator Superfamily
IFY67_01257	COG2814	Major facilitator Superfamily
IFY67_01258	COG3711	transcriptional antiterminator
IFY67_01259	COG3683	transport system, periplasmic component
IFY67_01260	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
IFY67_01266	COG0822	iron-sulfur transferase activity
IFY67_01270	COG0633	Ferredoxin
IFY67_01271	COG2975	iron-sulfur cluster assembly
IFY67_01275	COG2897	thiosulfate sulfurtransferase activity
IFY67_01276	COG2373	Large extracellular alpha-helical protein
IFY67_01277	COG4953	penicillin-binding protein 1C
IFY67_01283	COG2976	Protein conserved in bacteria
IFY67_01287	COG1645	bacterial-type flagellum-dependent swarming motility
IFY67_01289	COG0517	IMP dehydrogenase activity
IFY67_01289	COG0516	GMP reductase activity
IFY67_01291	COG3119	arylsulfatase activity
IFY67_01292	COG0641	radical SAM
IFY67_01296	COG2200	EAL domain
IFY67_01299	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
IFY67_01302	COG2723	6-phospho-beta-galactosidase activity
IFY67_01304	COG2233	PERMEase
IFY67_01307	COG1393	Belongs to the ArsC family
IFY67_01308	COG4783	chaperone-mediated protein folding
IFY67_01309	COG0628	permease
IFY67_01310	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
IFY67_01311	COG2716	regulation of RNA biosynthetic process
IFY67_01313	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
IFY67_01315	COG2321	neutral zinc metallopeptidase
IFY67_01316	COG1444	tRNA N-acetyltransferase activity
IFY67_01317	COG0400	carboxylic ester hydrolase activity
IFY67_01320	COG1393	Belongs to the ArsC family
IFY67_01321	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
IFY67_01322	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
IFY67_01322	COG0493	'glutamate synthase
IFY67_01324	COG5342	invasion associated locus B
IFY67_01325	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
IFY67_01326	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
IFY67_01328	COG4810	utilization protein
IFY67_01346	COG0860	N-Acetylmuramoyl-L-alanine amidase
IFY67_01350	COG2837	iron assimilation
IFY67_01351	COG4150	thiosulfate binding
IFY67_01352	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
IFY67_01353	COG4208	sulfate ABC transporter
IFY67_01354	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
IFY67_01356	COG4319	ketosteroid isomerase
IFY67_01363	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
IFY67_01367	COG3530	Putative quorum-sensing-regulated virulence factor
IFY67_01368	COG0385	Bile acid
IFY67_01369	COG0583	DNA-binding transcription factor activity
IFY67_01375	COG3415	Transposase
IFY67_01376	COG3415	Transposase
IFY67_01379	COG2200	EAL domain
IFY67_01379	COG2199	diguanylate cyclase activity
IFY67_01380	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
IFY67_01383	COG0667	Aldo Keto reductase
IFY67_01384	COG3961	Belongs to the TPP enzyme family
IFY67_01387	COG3279	Response regulator of the LytR AlgR family
IFY67_01388	COG3275	phosphorelay sensor kinase activity
IFY67_01389	COG0436	Aminotransferase
IFY67_01390	COG2807	transmembrane transport
IFY67_01391	COG0590	tRNA wobble adenosine to inosine editing
IFY67_01392	COG0583	DNA-binding transcription factor activity
IFY67_01399	COG2885	chlorophyll binding
IFY67_01422	COG2116	formate transmembrane transporter activity
IFY67_01423	COG2853	Lipoprotein
IFY67_01425	COG3691	Protein conserved in bacteria
IFY67_01429	COG2062	phosphohistidine phosphatase, SixA
IFY67_01434	COG0730	response to heat
IFY67_01435	COG3101	peptidyl-lysine hydroxylation
IFY67_01438	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
IFY67_01442	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
IFY67_01444	COG0586	Pfam SNARE associated Golgi protein
IFY67_01446	COG0285	dihydrofolate synthase activity
IFY67_01447	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
IFY67_01448	COG1286	toxin biosynthetic process
IFY67_01449	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
IFY67_01450	COG0163	prenyltransferase activity
IFY67_01454	COG4160	amino acid transport
IFY67_01455	COG4598	ABC transporter
IFY67_01457	COG1090	epimerase
IFY67_01458	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
IFY67_01459	COG0625	glutathione transferase activity
IFY67_01460	COG0625	glutathione transferase activity
IFY67_01461	COG0622	Phosphoesterase
IFY67_01462	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
IFY67_01463	COG0280	phosphate acetyltransferase
IFY67_01463	COG0857	belongs to the CobB CobQ family
IFY67_01467	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
IFY67_01468	COG0490	domain, Protein
IFY67_01468	COG0471	metal ion transport
IFY67_01470	COG0436	Aminotransferase
IFY67_01471	COG0583	DNA-binding transcription factor activity
IFY67_01480	COG0839	Belongs to the complex I subunit 6 family
IFY67_01482	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
IFY67_01483	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
IFY67_01484	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
IFY67_01488	COG2153	protein acetylation
IFY67_01489	COG1169	isochorismate synthase
IFY67_01494	COG0318	PFAM AMP-dependent synthetase and ligase
IFY67_01496	COG5464	transposase or invertase
IFY67_01499	COG1414	Transcriptional regulator
IFY67_01501	COG2271	Major facilitator Superfamily
IFY67_01504	COG0247	lactate metabolic process
IFY67_01505	COG0247	lactate metabolic process
IFY67_01507	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
IFY67_01508	COG2271	Major facilitator Superfamily
IFY67_01509	COG0584	glycerophosphoryl diester phosphodiesterase
IFY67_01510	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
IFY67_01515	COG0784	Response regulator, receiver
IFY67_01515	COG2205	protein histidine kinase activity
IFY67_01517	COG0642	Histidine kinase
IFY67_01517	COG2198	Histidine kinase
IFY67_01520	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
IFY67_01520	COG2169	Transcriptional regulator
IFY67_01521	COG3145	DNA-N1-methyladenine dioxygenase activity
IFY67_01522	COG4615	Cyclic peptide transporter
IFY67_01523	COG2239	Acts as a magnesium transporter
IFY67_01524	COG0659	secondary active sulfate transmembrane transporter activity
IFY67_01527	COG0628	permease
IFY67_01532	COG1349	DNA-binding transcription factor activity
IFY67_01533	COG0494	nUDIX hydrolase
IFY67_01537	COG1061	Type III restriction enzyme res subunit
IFY67_01538	COG1187	pseudouridine synthase activity
IFY67_01539	COG2814	Major facilitator Superfamily
IFY67_01541	COG4172	Belongs to the ABC transporter superfamily
IFY67_01542	COG4239	(ABC) transporter, permease
IFY67_01543	COG4174	ABC transporter (Permease)
IFY67_01544	COG4166	transmembrane transport
IFY67_01545	COG2200	EAL domain
IFY67_01546	COG0791	NLP P60 protein
IFY67_01547	COG0671	phosphoesterase, PA-phosphatase related
IFY67_01548	COG0523	cobalamin synthesis protein
IFY67_01549	COG0246	Mannitol dehydrogenase
IFY67_01550	COG1312	Catalyzes the dehydration of D-mannonate
IFY67_01554	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
IFY67_01554	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
IFY67_01555	COG1105	Belongs to the carbohydrate kinase PfkB family
IFY67_01556	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
IFY67_01556	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
IFY67_01556	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
IFY67_01557	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
IFY67_01557	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
IFY67_01557	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
IFY67_01559	COG2855	membrane
IFY67_01560	COG0583	DNA-binding transcription factor activity
IFY67_01561	COG0833	amino acid
IFY67_01562	COG4771	TonB-dependent receptor
IFY67_01565	COG2311	Membrane
IFY67_01568	COG1129	ABC transporter
IFY67_01570	COG2949	membrane
IFY67_01572	COG1346	cytolysis
IFY67_01574	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
IFY67_01575	COG3659	wide pore channel activity
IFY67_01578	COG2723	6-phospho-beta-galactosidase activity
IFY67_01579	COG1538	Outer membrane efflux protein
IFY67_01580	COG0586	Pfam SNARE associated Golgi protein
IFY67_01582	COG1686	Belongs to the peptidase S11 family
IFY67_01584	COG0277	FAD linked oxidase domain protein
IFY67_01585	COG1472	Belongs to the glycosyl hydrolase 3 family
IFY67_01586	COG1732	Glycine betaine
IFY67_01587	COG1174	glycine betaine transport
IFY67_01588	COG1125	glycine betaine transport
IFY67_01589	COG1174	glycine betaine transport
IFY67_01591	COG3275	phosphorelay sensor kinase activity
IFY67_01593	COG4807	Protein conserved in bacteria
IFY67_01597	COG5455	response to cobalt ion
IFY67_01598	COG0583	DNA-binding transcription factor activity
IFY67_01599	COG2252	PERMEase
IFY67_01600	COG2252	PERMEase
IFY67_01602	COG0583	DNA-binding transcription factor activity
IFY67_01605	COG0351	phosphomethylpyrimidine kinase
IFY67_01606	COG1830	Aldolase
IFY67_01609	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
IFY67_01614	COG1070	Carbohydrate kinase
IFY67_01615	COG1070	Carbohydrate kinase
IFY67_01617	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
IFY67_01618	COG4948	Mandelate Racemase Muconate Lactonizing
IFY67_01619	COG0747	negative chemotaxis
IFY67_01620	COG0601	transmembrane transport
IFY67_01621	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
IFY67_01622	COG0444	Belongs to the ABC transporter superfamily
IFY67_01623	COG4608	Belongs to the ABC transporter superfamily
IFY67_01625	COG0826	peptidase U32
IFY67_01626	COG0745	RESPONSE REGULATOR receiver
IFY67_01627	COG2205	protein histidine kinase activity
IFY67_01632	COG1301	dicarboxylic acid transport
IFY67_01636	COG5002	protein histidine kinase activity
IFY67_01637	COG0443	Heat shock 70 kDa protein
IFY67_01638	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
IFY67_01641	COG2982	Protein involved in outer membrane biogenesis
IFY67_01642	COG1253	flavin adenine dinucleotide binding
IFY67_01648	COG0438	transferase activity, transferring glycosyl groups
IFY67_01669	COG0438	transferase activity, transferring glycosyl groups
IFY67_01674	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
IFY67_01679	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
IFY67_01680	COG0583	DNA-binding transcription factor activity
IFY67_01681	COG0531	amino acid
IFY67_01682	COG0640	Transcriptional regulator
IFY67_01683	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
IFY67_01684	COG2925	Exonuclease
IFY67_01687	COG1289	transmembrane transporter activity
IFY67_01691	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
IFY67_01693	COG1942	4-Oxalocrotonate Tautomerase
IFY67_01694	COG0583	DNA-binding transcription factor activity
IFY67_01695	COG0095	Lipoate-protein ligase
IFY67_01696	COG0477	Major facilitator Superfamily
IFY67_01698	COG5001	Diguanylate cyclase
IFY67_01698	COG3300	MHYT domain
IFY67_01699	COG3615	Tellurite resistance protein tehB
IFY67_01705	COG3706	GGDEF domain
IFY67_01707	COG2801	Transposase and inactivated derivatives
IFY67_01708	COG2963	transposase activity
IFY67_01709	COG2207	Transcriptional regulator
IFY67_01712	COG1566	PFAM secretion protein HlyD family protein
IFY67_01717	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_01718	COG2814	Major facilitator Superfamily
IFY67_01723	COG0582	viral genome integration into host DNA
IFY67_01725	COG0534	Mate efflux family protein
IFY67_01727	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
IFY67_01731	COG0604	alcohol dehydrogenase
IFY67_01732	COG1309	transcriptional regulator
IFY67_01733	COG0025	NhaP-type Na H and K H
IFY67_01734	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
IFY67_01738	COG2963	transposase activity
IFY67_01747	COG3504	Conjugal transfer protein
IFY67_01761	COG4771	TonB-dependent receptor
IFY67_01762	COG1021	2,3-dihydroxybenzoate-AMP ligase
IFY67_01766	COG2226	methyltransferase
IFY67_01766	COG3433	isochorismatase activity
IFY67_01766	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
IFY67_01768	COG2226	methyltransferase
IFY67_01768	COG3433	isochorismatase activity
IFY67_01768	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
IFY67_01769	COG2226	methyltransferase
IFY67_01769	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
IFY67_01769	COG3433	isochorismatase activity
IFY67_01772	COG1132	(ABC) transporter
IFY67_01773	COG2814	Major facilitator Superfamily
IFY67_01774	COG1169	isochorismate synthase
IFY67_01775	COG0582	viral genome integration into host DNA
IFY67_01785	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
IFY67_01787	COG1418	mRNA catabolic process
IFY67_01788	COG0270	DNA (cytosine-5-)-methyltransferase activity
IFY67_01789	COG3727	T/G mismatch-specific endonuclease activity
IFY67_01790	COG0697	spore germination
IFY67_01791	COG2354	Protein conserved in bacteria
IFY67_01792	COG2354	Protein conserved in bacteria
IFY67_01799	COG0366	Alpha amylase catalytic
IFY67_01800	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
IFY67_01802	COG0765	amino acid transport
IFY67_01803	COG1126	abc transporter atp-binding protein
IFY67_01804	COG2197	response regulator
IFY67_01806	COG2197	response regulator
IFY67_01823	COG0305	Participates in initiation and elongation during chromosome replication
IFY67_01854	COG3772	lysozyme
IFY67_01858	COG3318	Belongs to the UPF0149 family
IFY67_01858	COG3012	SEC-C Motif Domain Protein
IFY67_01859	COG0814	amino acid
IFY67_01861	COG1528	Iron-storage protein
IFY67_01863	COG0477	Major facilitator Superfamily
IFY67_01865	COG2211	Major facilitator Superfamily
IFY67_01866	COG1528	Iron-storage protein
IFY67_01867	COG1879	ABC-type sugar transport system periplasmic component
IFY67_01869	COG1172	Belongs to the binding-protein-dependent transport system permease family
IFY67_01875	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
IFY67_01877	COG3102	Protein conserved in bacteria
IFY67_01881	COG3788	relative of glutathione S-transferase, MAPEG superfamily
IFY67_01882	COG1801	Protein of unknown function DUF72
IFY67_01883	COG1335	isochorismatase
IFY67_01885	COG0494	nUDIX hydrolase
IFY67_01890	COG1108	ABC-type Mn2 Zn2 transport systems permease components
IFY67_01892	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
IFY67_01893	COG0739	heme binding
IFY67_01894	COG1560	Kdo2-lipid A biosynthetic process
IFY67_01896	COG1737	Transcriptional regulator
IFY67_01897	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
IFY67_01898	COG0129	dihydroxy-acid dehydratase activity
IFY67_01899	COG0800	Aldolase
IFY67_01901	COG3141	response to X-ray
IFY67_01902	COG2979	Protein of unknown function (DUF533)
IFY67_01903	COG1770	oligopeptidase
IFY67_01904	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
IFY67_01906	COG2372	response to copper ion
IFY67_01907	COG1276	copper resistance
IFY67_01910	COG2990	Protein conserved in bacteria
IFY67_01915	COG3008	intermembrane lipid transfer
IFY67_01916	COG2995	paraquat-inducible protein a
IFY67_01917	COG1956	GAF domain-containing protein
IFY67_01921	COG2814	Major facilitator Superfamily
IFY67_01922	COG1414	Transcriptional regulator
IFY67_01927	COG0768	penicillin binding
IFY67_01928	COG2226	methyltransferase
IFY67_01932	COG3716	PTS system mannose fructose sorbose family IID component
IFY67_01933	COG3715	PTS system
IFY67_01934	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
IFY67_01934	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
IFY67_01935	COG1253	flavin adenine dinucleotide binding
IFY67_01936	COG2200	EAL domain
IFY67_01937	COG1760	l-serine dehydratase
IFY67_01941	COG0251	oxidation-reduction process
IFY67_01942	COG1199	ATP-dependent helicase activity
IFY67_01944	COG3065	identical protein binding
IFY67_01946	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
IFY67_01948	COG2894	cell division
IFY67_01951	COG0179	Fumarylacetoacetate (FAA) hydrolase
IFY67_01957	COG2719	SpoVR family
IFY67_01961	COG1619	proteins homologs of microcin C7 resistance protein MccF
IFY67_01962	COG1619	proteins homologs of microcin C7 resistance protein MccF
IFY67_01964	COG4774	siderophore transport
IFY67_01968	COG2308	Evidence 4 Homologs of previously reported genes of
IFY67_01974	COG0583	DNA-binding transcription factor activity
IFY67_01975	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
IFY67_01978	COG1882	Formate acetyltransferase
IFY67_01984	COG0583	DNA-binding transcription factor activity
IFY67_01990	COG0583	DNA-binding transcription factor activity
IFY67_01991	COG0582	viral genome integration into host DNA
IFY67_02005	COG1846	Transcriptional regulator
IFY67_02016	COG4725	Belongs to the MT-A70-like family
IFY67_02020	COG3772	lysozyme
IFY67_02025	COG1783	phage Terminase large subunit
IFY67_02026	COG3567	Phage-associated protein, HI1409 family
IFY67_02053	COG3344	reverse transcriptase
IFY67_02056	COG0583	DNA-binding transcription factor activity
IFY67_02059	COG3122	Protein conserved in bacteria
IFY67_02064	COG2885	chlorophyll binding
IFY67_02085	COG0012	GTP binding
IFY67_02089	COG0659	secondary active sulfate transmembrane transporter activity
IFY67_02095	COG2890	protein-(glutamine-N5) methyltransferase activity
IFY67_02099	COG0387	Pfam Sodium calcium exchanger
IFY67_02100	COG4572	Cation transport regulator
IFY67_02101	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
IFY67_02103	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
IFY67_02104	COG3707	response regulator
IFY67_02105	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
IFY67_02107	COG1116	anion transmembrane transporter activity
IFY67_02108	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
IFY67_02108	COG2146	nitrite reductase [NAD(P)H] activity
IFY67_02109	COG0243	molybdopterin cofactor binding
IFY67_02110	COG4932	domain protein
IFY67_02111	COG2197	response regulator
IFY67_02112	COG3850	Histidine kinase
IFY67_02113	COG2223	nitrite transmembrane transporter activity
IFY67_02114	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
IFY67_02115	COG1140	nitrate reductase beta subunit
IFY67_02116	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
IFY67_02117	COG2181	nitrate reductase activity
IFY67_02119	COG1522	sequence-specific DNA binding
IFY67_02122	COG0788	formyltetrahydrofolate deformylase activity
IFY67_02124	COG1752	Esterase of the alpha-beta hydrolase superfamily
IFY67_02125	COG0745	RESPONSE REGULATOR receiver
IFY67_02126	COG1210	Utp--glucose-1-phosphate uridylyltransferase
IFY67_02127	COG2916	Histone family protein nucleoid-structuring protein H-NS
IFY67_02128	COG1435	thymidine kinase activity
IFY67_02129	COG1454	alcohol dehydrogenase
IFY67_02129	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_02130	COG2095	MarC family integral membrane protein
IFY67_02131	COG4166	transmembrane transport
IFY67_02132	COG0601	transmembrane transport
IFY67_02133	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
IFY67_02134	COG0444	Belongs to the ABC transporter superfamily
IFY67_02136	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
IFY67_02140	COG2353	YceI-like domain
IFY67_02141	COG2350	Protein conserved in bacteria
IFY67_02143	COG3001	Fructosamine kinase
IFY67_02145	COG1105	Belongs to the carbohydrate kinase PfkB family
IFY67_02146	COG3137	Salt-induced outer membrane protein
IFY67_02153	COG0072	phenylalanine-tRNA ligase activity
IFY67_02153	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
IFY67_02154	COG0776	regulation of translation
IFY67_02157	COG0583	DNA-binding transcription factor activity
IFY67_02161	COG0386	Belongs to the glutathione peroxidase family
IFY67_02163	COG0791	NLP P60 protein
IFY67_02165	COG4256	Hemin uptake protein
IFY67_02166	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
IFY67_02168	COG0574	Belongs to the PEP-utilizing enzyme family
IFY67_02168	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
IFY67_02169	COG0628	permease
IFY67_02170	COG0247	lactate metabolic process
IFY67_02170	COG0277	FAD linked oxidase domain protein
IFY67_02171	COG0277	FAD linked oxidase domain protein
IFY67_02171	COG0247	lactate metabolic process
IFY67_02172	COG2050	protein possibly involved in aromatic compounds catabolism
IFY67_02173	COG2261	transglycosylase associated protein
IFY67_02179	COG1120	ATPase activity
IFY67_02180	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
IFY67_02182	COG0583	DNA-binding transcription factor activity
IFY67_02187	COG1304	FMN binding
IFY67_02188	COG1309	transcriptional regulator
IFY67_02191	COG0316	Belongs to the HesB IscA family
IFY67_02192	COG0719	Fe-S assembly protein
IFY67_02193	COG0396	ATPase activity
IFY67_02194	COG0719	Fe-S assembly protein
IFY67_02197	COG1376	ErfK ybiS ycfS ynhG family protein
IFY67_02201	COG1309	transcriptional regulator
IFY67_02202	COG3185	4-Hydroxyphenylpyruvate dioxygenase
IFY67_02202	COG1082	Xylose isomerase domain protein TIM barrel
IFY67_02203	COG2271	Major facilitator Superfamily
IFY67_02204	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
IFY67_02206	COG1120	ATPase activity
IFY67_02207	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
IFY67_02208	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
IFY67_02209	COG1414	Transcriptional regulator
IFY67_02216	COG2814	Major facilitator Superfamily
IFY67_02220	COG0583	DNA-binding transcription factor activity
IFY67_02221	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
IFY67_02225	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
IFY67_02226	COG1116	anion transmembrane transporter activity
IFY67_02227	COG4774	siderophore transport
IFY67_02228	COG1120	ATPase activity
IFY67_02229	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
IFY67_02230	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
IFY67_02231	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
IFY67_02232	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
IFY67_02235	COG0765	amino acid transport
IFY67_02236	COG1126	abc transporter atp-binding protein
IFY67_02242	COG1473	amidohydrolase
IFY67_02243	COG3383	formate dehydrogenase (NAD+) activity
IFY67_02244	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
IFY67_02245	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
IFY67_02248	COG1175	transmembrane transport
IFY67_02254	COG4133	protoheme IX ABC transporter activity
IFY67_02255	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
IFY67_02256	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
IFY67_02259	COG1138	Cytochrome C-type biogenesis protein
IFY67_02260	COG1138	Cytochrome C-type biogenesis protein
IFY67_02261	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
IFY67_02262	COG4235	cytochrome complex assembly
IFY67_02262	COG3088	subunit of a heme lyase
IFY67_02269	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
IFY67_02273	COG5002	protein histidine kinase activity
IFY67_02273	COG3850	Histidine kinase
IFY67_02274	COG0745	RESPONSE REGULATOR receiver
IFY67_02277	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
IFY67_02278	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
IFY67_02286	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_02287	COG2610	gluconate transmembrane transporter activity
IFY67_02288	COG1250	3-hydroxyacyl-CoA dehydrogenase
IFY67_02290	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
IFY67_02291	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
IFY67_02292	COG0583	DNA-binding transcription factor activity
IFY67_02298	COG2814	Major facilitator Superfamily
IFY67_02305	COG0277	FAD linked oxidase domain protein
IFY67_02306	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
IFY67_02311	COG0402	S-adenosylhomocysteine deaminase activity
IFY67_02318	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
IFY67_02320	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_02321	COG0531	amino acid
IFY67_02324	COG0583	DNA-binding transcription factor activity
IFY67_02330	COG4608	Belongs to the ABC transporter superfamily
IFY67_02331	COG0444	Belongs to the ABC transporter superfamily
IFY67_02336	COG0346	lactoylglutathione lyase activity
IFY67_02337	COG1349	DNA-binding transcription factor activity
IFY67_02344	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
IFY67_02348	COG0300	oxidoreductase activity
IFY67_02358	COG2801	Transposase and inactivated derivatives
IFY67_02359	COG2801	Transposase and inactivated derivatives
IFY67_02366	COG0307	riboflavin synthase, alpha
IFY67_02367	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
IFY67_02368	COG2814	Major facilitator Superfamily
IFY67_02369	COG0583	DNA-binding transcription factor activity
IFY67_02370	COG0583	DNA-binding transcription factor activity
IFY67_02373	COG2814	Major facilitator Superfamily
IFY67_02376	COG0791	NLP P60 protein
IFY67_02377	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
IFY67_02379	COG0346	lactoylglutathione lyase activity
IFY67_02380	COG1902	pentaerythritol trinitrate reductase activity
IFY67_02381	COG1309	transcriptional regulator
IFY67_02382	COG3313	Fe-S protein
IFY67_02383	COG4989	oxidoreductase activity
IFY67_02384	COG2032	superoxide dismutase activity
IFY67_02385	COG1289	transmembrane transporter activity
IFY67_02386	COG1566	PFAM secretion protein HlyD family protein
IFY67_02389	COG3706	GGDEF domain
IFY67_02392	COG3895	Periplasmic Protein
IFY67_02395	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
IFY67_02396	COG0625	glutathione transferase activity
IFY67_02398	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
IFY67_02400	COG4659	FMN binding
IFY67_02407	COG2723	6-phospho-beta-galactosidase activity
IFY67_02408	COG2723	6-phospho-beta-galactosidase activity
IFY67_02409	COG0673	inositol 2-dehydrogenase activity
IFY67_02411	COG2814	Major facilitator Superfamily
IFY67_02415	COG3038	cytochrome b561
IFY67_02419	COG0583	DNA-binding transcription factor activity
IFY67_02420	COG3485	protocatechuate 3,4-dioxygenase
IFY67_02421	COG3485	protocatechuate 3,4-dioxygenase
IFY67_02422	COG5383	Protein conserved in bacteria
IFY67_02423	COG2272	Belongs to the type-B carboxylesterase lipase family
IFY67_02426	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
IFY67_02427	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
IFY67_02428	COG1275	C4-dicarboxylate transporter malic acid transport protein
IFY67_02429	COG0500	methyltransferase
IFY67_02432	COG2207	Transcriptional regulator
IFY67_02432	COG3708	Transcriptional regulator
IFY67_02433	COG3135	benzoate transporter
IFY67_02434	COG1396	sequence-specific DNA binding
IFY67_02435	COG0826	peptidase U32
IFY67_02439	COG1294	oxidase, subunit
IFY67_02440	COG1271	oxidase subunit
IFY67_02442	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
IFY67_02443	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
IFY67_02444	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
IFY67_02445	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
IFY67_02446	COG3842	ATPase activity
IFY67_02447	COG1176	ABC-type spermidine putrescine transport system, permease component I
IFY67_02448	COG1177	transmembrane transport
IFY67_02449	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_02454	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_02455	COG0747	negative chemotaxis
IFY67_02457	COG3238	Protein conserved in bacteria
IFY67_02458	COG1247	-acetyltransferase
IFY67_02460	COG2130	NADP-dependent
IFY67_02462	COG3691	Protein conserved in bacteria
IFY67_02463	COG1228	amidohydrolase
IFY67_02465	COG4772	TonB-dependent receptor
IFY67_02470	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
IFY67_02471	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
IFY67_02472	COG1473	amidohydrolase
IFY67_02473	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
IFY67_02474	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
IFY67_02476	COG0765	amino acid transport
IFY67_02477	COG1126	abc transporter atp-binding protein
IFY67_02479	COG0625	glutathione transferase activity
IFY67_02481	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
IFY67_02482	COG3842	ATPase activity
IFY67_02483	COG1840	ABC-type Fe3 transport system, periplasmic component
IFY67_02484	COG1178	ABC-type Fe3 transport system permease component
IFY67_02485	COG2162	N-hydroxyarylamine O-acetyltransferase activity
IFY67_02486	COG2181	nitrate reductase activity
IFY67_02487	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
IFY67_02488	COG1140	nitrate reductase beta subunit
IFY67_02489	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
IFY67_02493	COG1414	Transcriptional regulator
IFY67_02495	COG4948	Mandelate Racemase Muconate Lactonizing
IFY67_02496	COG4829	muconolactone delta-isomerase
IFY67_02497	COG3485	protocatechuate 3,4-dioxygenase
IFY67_02499	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
IFY67_02503	COG3383	formate dehydrogenase (NAD+) activity
IFY67_02503	COG0243	molybdopterin cofactor binding
IFY67_02504	COG3383	formate dehydrogenase (NAD+) activity
IFY67_02504	COG0243	molybdopterin cofactor binding
IFY67_02505	COG0437	4 iron, 4 sulfur cluster binding
IFY67_02506	COG2864	formate dehydrogenase
IFY67_02508	COG2326	polyphosphate kinase activity
IFY67_02510	COG2814	Major facilitator Superfamily
IFY67_02512	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
IFY67_02514	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
IFY67_02517	COG0747	negative chemotaxis
IFY67_02518	COG1064	alcohol dehydrogenase
IFY67_02522	COG0488	(ABC) transporter
IFY67_02529	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_02531	COG3685	Protein conserved in bacteria
IFY67_02533	COG0366	Alpha amylase catalytic
IFY67_02535	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_02537	COG2323	membrane
IFY67_02539	COG3111	PFAM Bacterial OB fold (BOF) protein
IFY67_02541	COG1764	response to oxidative stress
IFY67_02545	COG3781	membrane
IFY67_02546	COG0243	molybdopterin cofactor binding
IFY67_02547	COG0583	DNA-binding transcription factor activity
IFY67_02548	COG2814	Major facilitator Superfamily
IFY67_02549	COG1285	pathogenesis
IFY67_02550	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
IFY67_02552	COG0583	DNA-binding transcription factor activity
IFY67_02556	COG0505	Belongs to the CarA family
IFY67_02564	COG0596	Alpha beta hydrolase
IFY67_02566	COG2205	protein histidine kinase activity
IFY67_02569	COG0076	glutamate decarboxylase activity
IFY67_02570	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
IFY67_02571	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
IFY67_02572	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
IFY67_02573	COG1116	anion transmembrane transporter activity
IFY67_02574	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
IFY67_02576	COG0673	inositol 2-dehydrogenase activity
IFY67_02579	COG3706	GGDEF domain
IFY67_02583	COG0402	S-adenosylhomocysteine deaminase activity
IFY67_02584	COG1953	Uracil, thiamine, allantoin
IFY67_02594	COG2207	Transcriptional regulator
IFY67_02597	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
IFY67_02598	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
IFY67_02602	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
IFY67_02611	COG0765	amino acid transport
IFY67_02613	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
IFY67_02615	COG2070	2-Nitropropane dioxygenase
IFY67_02616	COG0583	DNA-binding transcription factor activity
IFY67_02617	COG0583	DNA-binding transcription factor activity
IFY67_02619	COG1902	pentaerythritol trinitrate reductase activity
IFY67_02620	COG4529	Protein conserved in bacteria
IFY67_02621	COG4529	Protein conserved in bacteria
IFY67_02622	COG0477	Major facilitator Superfamily
IFY67_02630	COG2223	nitrite transmembrane transporter activity
IFY67_02631	COG1609	Transcriptional regulator
IFY67_02632	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
IFY67_02634	COG3037	sugar-specific permease SgaT UlaA
IFY67_02635	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
IFY67_02637	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
IFY67_02638	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
IFY67_02638	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
IFY67_02638	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
IFY67_02641	COG0583	DNA-binding transcription factor activity
IFY67_02642	COG0583	DNA-binding transcription factor activity
IFY67_02643	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
IFY67_02645	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
IFY67_02649	COG1172	Belongs to the binding-protein-dependent transport system permease family
IFY67_02651	COG1609	Transcriptional regulator
IFY67_02657	COG1652	LysM domain
IFY67_02662	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
IFY67_02662	COG0456	acetyltransferase
IFY67_02664	COG0667	Aldo Keto reductase
IFY67_02665	COG0667	Aldo Keto reductase
IFY67_02667	COG0667	Aldo Keto reductase
IFY67_02668	COG2801	Transposase and inactivated derivatives
IFY67_02669	COG2801	Transposase and inactivated derivatives
IFY67_02672	COG2963	transposase activity
IFY67_02681	COG0653	protein targeting
IFY67_02686	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
IFY67_02693	COG1349	DNA-binding transcription factor activity
IFY67_02696	COG1349	DNA-binding transcription factor activity
IFY67_02697	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
IFY67_02698	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
IFY67_02699	COG0738	Major facilitator superfamily
IFY67_02709	COG1929	Belongs to the glycerate kinase type-1 family
IFY67_02710	COG3835	regulator
IFY67_02714	COG2186	Transcriptional regulator
IFY67_02715	COG1263	PTS System
IFY67_02715	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
IFY67_02717	COG2814	Major facilitator Superfamily
IFY67_02718	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
IFY67_02718	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
IFY67_02721	COG2819	hydrolase of the alpha beta superfamily
IFY67_02722	COG5001	Diguanylate cyclase
IFY67_02722	COG3300	MHYT domain
IFY67_02729	COG3188	usher protein
IFY67_02730	COG3188	usher protein
IFY67_02733	COG1649	PFAM Uncharacterised BCR, COG1649
IFY67_02734	COG3550	peptidyl-serine autophosphorylation
IFY67_02735	COG1396	sequence-specific DNA binding
IFY67_02736	COG2351	hydroxyisourate hydrolase activity
IFY67_02737	COG3195	allantoin biosynthetic process
IFY67_02737	COG3648	Uricase
IFY67_02738	COG2233	PERMEase
IFY67_02739	COG2233	PERMEase
IFY67_02745	COG2207	Transcriptional regulator
IFY67_02748	COG4628	conserved protein (DUF2132)
IFY67_02752	COG2011	ABC-type metal ion transport system permease component
IFY67_02753	COG2070	2-Nitropropane dioxygenase
IFY67_02755	COG0477	Major facilitator Superfamily
IFY67_02756	COG0346	lactoylglutathione lyase activity
IFY67_02766	COG2199	diguanylate cyclase activity
IFY67_02769	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_02770	COG0583	DNA-binding transcription factor activity
IFY67_02772	COG0039	L-malate dehydrogenase activity
IFY67_02773	COG1349	DNA-binding transcription factor activity
IFY67_02774	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
IFY67_02775	COG3395	kinase activity
IFY67_02777	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
IFY67_02781	COG2731	YhcH YjgK YiaL family protein
IFY67_02782	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_02787	COG4977	sequence-specific DNA binding
IFY67_02789	COG0697	spore germination
IFY67_02790	COG2814	Major facilitator Superfamily
IFY67_02796	COG0683	leucine binding
IFY67_02797	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
IFY67_02804	COG2223	nitrite transmembrane transporter activity
IFY67_02805	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
IFY67_02808	COG1349	DNA-binding transcription factor activity
IFY67_02809	COG2084	Dehydrogenase
IFY67_02810	COG3395	kinase activity
IFY67_02811	COG0235	Class ii aldolase
IFY67_02812	COG3622	Belongs to the hyi family
IFY67_02813	COG2610	gluconate transmembrane transporter activity
IFY67_02815	COG2207	Transcriptional regulator
IFY67_02815	COG3708	Transcriptional regulator
IFY67_02817	COG2200	EAL domain
IFY67_02818	COG1546	Belongs to the CinA family
IFY67_02819	COG0071	Belongs to the small heat shock protein (HSP20) family
IFY67_02823	COG2135	peptidase activity
IFY67_02824	COG2207	Transcriptional regulator
IFY67_02826	COG0339	signal peptide processing
IFY67_02827	COG4221	oxidoreductase activity
IFY67_02828	COG1802	Transcriptional regulator
IFY67_02829	COG0589	response to stress
IFY67_02830	COG0246	Mannitol dehydrogenase
IFY67_02831	COG2271	Major facilitator Superfamily
IFY67_02834	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
IFY67_02837	COG0243	molybdopterin cofactor binding
IFY67_02838	COG0437	4 iron, 4 sulfur cluster binding
IFY67_02839	COG3302	dmso reductase anchor subunit
IFY67_02842	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
IFY67_02843	COG1940	carbohydrate kinase activity
IFY67_02844	COG0583	DNA-binding transcription factor activity
IFY67_02845	COG2814	Major facilitator Superfamily
IFY67_02846	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
IFY67_02849	COG3591	Belongs to the peptidase S1B family
IFY67_02852	COG0628	permease
IFY67_02858	COG0679	Auxin Efflux Carrier
IFY67_02860	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
IFY67_02866	COG3290	protein histidine kinase activity
IFY67_02867	COG4565	transcriptional regulatory protein
IFY67_02871	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
IFY67_02871	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
IFY67_02873	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
IFY67_02874	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
IFY67_02876	COG0183	Belongs to the thiolase family
IFY67_02877	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
IFY67_02879	COG1414	Transcriptional regulator
IFY67_02880	COG2840	Smr protein MutS2
IFY67_02881	COG0583	DNA-binding transcription factor activity
IFY67_02883	COG1473	amidohydrolase
IFY67_02884	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
IFY67_02887	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
IFY67_02890	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
IFY67_02891	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
IFY67_02893	COG0531	amino acid
IFY67_02894	COG0531	amino acid
IFY67_02895	COG0531	amino acid
IFY67_02897	COG3136	membrane protein required for alginate biosynthesis
IFY67_02898	COG0745	RESPONSE REGULATOR receiver
IFY67_02900	COG2205	protein histidine kinase activity
IFY67_02902	COG0114	fumarate hydratase activity
IFY67_02903	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
IFY67_02903	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
IFY67_02904	COG1482	cell wall glycoprotein biosynthetic process
IFY67_02905	COG5339	Protein conserved in bacteria
IFY67_02906	COG1609	Transcriptional regulator
IFY67_02907	COG1263	PTS System
IFY67_02907	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
IFY67_02908	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
IFY67_02913	COG2391	methyltransferase activity
IFY67_02914	COG0425	Belongs to the sulfur carrier protein TusA family
IFY67_02915	COG5562	phage envelope protein
IFY67_02916	COG0401	homolog of Blt101
IFY67_02917	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
IFY67_02918	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_02919	COG1434	Gram-negative-bacterium-type cell wall biogenesis
IFY67_02921	COG1113	amino acid transport
IFY67_02922	COG2988	succinylglutamate desuccinylase activity
IFY67_02923	COG3724	N-succinylarginine dihydrolase activity
IFY67_02924	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_02925	COG3138	arginine N-succinyltransferase
IFY67_02926	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
IFY67_02927	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
IFY67_02928	COG0667	Aldo Keto reductase
IFY67_02929	COG0583	DNA-binding transcription factor activity
IFY67_02934	COG4122	O-methyltransferase activity
IFY67_02935	COG1643	Atp-dependent helicase
IFY67_02938	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
IFY67_02939	COG3327	negative regulation of DNA-templated transcription, initiation
IFY67_02940	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
IFY67_02941	COG0183	Belongs to the thiolase family
IFY67_02942	COG2050	protein possibly involved in aromatic compounds catabolism
IFY67_02943	COG1250	3-hydroxyacyl-CoA dehydrogenase
IFY67_02944	COG1024	Enoyl-CoA hydratase
IFY67_02945	COG1024	Enoyl-CoA hydratase
IFY67_02946	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
IFY67_02947	COG2151	metal-sulfur cluster biosynthetic enzyme
IFY67_02948	COG3396	Phenylacetate-CoA oxygenase
IFY67_02949	COG3460	Phenylacetate-CoA oxygenase
IFY67_02950	COG3396	Phenylacetate-CoA oxygenase
IFY67_02951	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_02951	COG2030	dehydratase
IFY67_02955	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
IFY67_02961	COG0583	DNA-binding transcription factor activity
IFY67_02962	COG1126	abc transporter atp-binding protein
IFY67_02964	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
IFY67_02967	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_02968	COG2207	Transcriptional regulator
IFY67_02969	COG3784	Protein of unknown function (DUF1318)
IFY67_02971	COG2911	Protein conserved in bacteria
IFY67_02972	COG0586	Pfam SNARE associated Golgi protein
IFY67_02973	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
IFY67_02974	COG3187	Heat shock protein
IFY67_02975	COG3042	response to heat
IFY67_02976	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
IFY67_02976	COG0674	pyruvate-flavodoxin oxidoreductase activity
IFY67_02976	COG1013	pyruvate-flavodoxin oxidoreductase activity
IFY67_02976	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
IFY67_02977	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
IFY67_02979	COG0589	response to stress
IFY67_02981	COG0513	Belongs to the DEAD box helicase family
IFY67_02983	COG1349	DNA-binding transcription factor activity
IFY67_02984	COG0673	inositol 2-dehydrogenase activity
IFY67_02987	COG1113	amino acid transport
IFY67_02988	COG1522	sequence-specific DNA binding
IFY67_02990	COG1448	Aminotransferase
IFY67_02991	COG2011	ABC-type metal ion transport system permease component
IFY67_02994	COG0436	Aminotransferase
IFY67_02995	COG0604	alcohol dehydrogenase
IFY67_03000	COG0583	DNA-binding transcription factor activity
IFY67_03004	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_03005	COG1309	transcriptional regulator
IFY67_03006	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_03023	COG2885	chlorophyll binding
IFY67_03028	COG0693	protein deglycase activity
IFY67_03029	COG1078	dGTPase activity
IFY67_03030	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_03031	COG0583	DNA-binding transcription factor activity
IFY67_03034	COG0656	L-ascorbic acid biosynthetic process
IFY67_03039	COG4166	transmembrane transport
IFY67_03040	COG2866	Carboxypeptidase
IFY67_03041	COG4948	Mandelate Racemase Muconate Lactonizing
IFY67_03042	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
IFY67_03043	COG3180	Ammonia monooxygenase
IFY67_03045	COG1486	melibiose metabolic process
IFY67_03046	COG0583	DNA-binding transcription factor activity
IFY67_03048	COG3106	COG3106 Predicted ATPase
IFY67_03050	COG1983	PspC domain protein
IFY67_03052	COG1842	Phage shock protein A
IFY67_03053	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
IFY67_03055	COG1473	amidohydrolase
IFY67_03058	COG0702	epimerase
IFY67_03061	COG2135	peptidase activity
IFY67_03064	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
IFY67_03065	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
IFY67_03077	COG1196	nuclear chromosome segregation
IFY67_03093	COG3728	DNA packaging
IFY67_03093	COG5484	DNA packaging
IFY67_03103	COG0484	heat shock protein binding
IFY67_03104	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
IFY67_03119	COG1484	DNA-dependent DNA replication
IFY67_03126	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
IFY67_03132	COG4171	peptide transport system, permease
IFY67_03135	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
IFY67_03137	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
IFY67_03138	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
IFY67_03138	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
IFY67_03141	COG1349	DNA-binding transcription factor activity
IFY67_03144	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
IFY67_03145	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
IFY67_03146	COG0671	phosphoesterase, PA-phosphatase related
IFY67_03148	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
IFY67_03153	COG0616	signal peptide processing
IFY67_03154	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_03155	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
IFY67_03164	COG0582	viral genome integration into host DNA
IFY67_03169	COG0583	DNA-binding transcription factor activity
IFY67_03171	COG0009	L-threonylcarbamoyladenylate synthase
IFY67_03173	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
IFY67_03174	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
IFY67_03174	COG0512	Glutamine amidotransferase of anthranilate synthase
IFY67_03175	COG0135	phosphoribosylanthranilate isomerase activity
IFY67_03175	COG0134	indole-3-glycerol-phosphate synthase activity
IFY67_03186	COG4774	siderophore transport
IFY67_03187	COG4774	siderophore transport
IFY67_03189	COG3047	cAMP biosynthetic process
IFY67_03190	COG0727	PFAM Uncharacterised protein family (UPF0153)
IFY67_03196	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
IFY67_03197	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_03198	COG1988	membrane-bound metal-dependent
IFY67_03199	COG1823	symporter activity
IFY67_03201	COG0753	catalase activity
IFY67_03203	COG1486	melibiose metabolic process
IFY67_03204	COG1917	Cupin 2, conserved barrel domain protein
IFY67_03204	COG2169	Transcriptional regulator
IFY67_03205	COG1447	Phosphotransferase system cellobiose-specific component IIA
IFY67_03206	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
IFY67_03207	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
IFY67_03208	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
IFY67_03210	COG0322	excinuclease ABC activity
IFY67_03211	COG3678	ATP-independent chaperone mediated protein folding
IFY67_03213	COG3724	N-succinylarginine dihydrolase activity
IFY67_03215	COG3138	arginine N-succinyltransferase
IFY67_03217	COG0708	Exodeoxyribonuclease III
IFY67_03218	COG0398	Pfam SNARE associated Golgi protein
IFY67_03219	COG0398	Pfam SNARE associated Golgi protein
IFY67_03220	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
IFY67_03221	COG4134	Bacterial extracellular solute-binding protein
IFY67_03222	COG4135	transport system, permease component
IFY67_03223	COG4136	ATPase activity
IFY67_03224	COG2897	thiosulfate sulfurtransferase activity
IFY67_03225	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
IFY67_03226	COG0494	nUDIX hydrolase
IFY67_03227	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
IFY67_03228	COG3321	synthase
IFY67_03228	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_03228	COG0604	alcohol dehydrogenase
IFY67_03229	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
IFY67_03230	COG0709	Synthesizes selenophosphate from selenide and ATP
IFY67_03232	COG0778	Nitroreductase
IFY67_03233	COG0616	signal peptide processing
IFY67_03234	COG0252	asparaginase activity
IFY67_03235	COG1335	isochorismatase
IFY67_03238	COG3139	Protein of unknown function (DUF1315)
IFY67_03242	COG0656	L-ascorbic acid biosynthetic process
IFY67_03243	COG3713	MltA-interacting MipA family protein
IFY67_03244	COG2766	serine protein kinase
IFY67_03247	COG0386	Belongs to the glutathione peroxidase family
IFY67_03251	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_03252	COG0583	DNA-binding transcription factor activity
IFY67_03253	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
IFY67_03254	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
IFY67_03256	COG0859	PFAM glycosyl transferase family 9
IFY67_03257	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
IFY67_03259	COG2207	Transcriptional regulator
IFY67_03260	COG2807	transmembrane transport
IFY67_03261	COG0504	CTP synthase activity
IFY67_03262	COG1683	Conserved Protein
IFY67_03263	COG3189	MarR family transcriptional regulator
IFY67_03264	COG3042	response to heat
IFY67_03265	COG2203	Gaf domain
IFY67_03265	COG2199	diguanylate cyclase activity
IFY67_03267	COG3182	Iron-regulated membrane protein
IFY67_03269	COG1560	Kdo2-lipid A biosynthetic process
IFY67_03271	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
IFY67_03272	COG3706	GGDEF domain
IFY67_03273	COG0583	DNA-binding transcription factor activity
IFY67_03274	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
IFY67_03279	COG1294	oxidase, subunit
IFY67_03280	COG1271	oxidase subunit
IFY67_03281	COG3546	catalase activity
IFY67_03282	COG3685	Protein conserved in bacteria
IFY67_03283	COG3685	Protein conserved in bacteria
IFY67_03284	COG3729	General stress protein
IFY67_03285	COG1063	alcohol dehydrogenase
IFY67_03286	COG3813	Protein conserved in bacteria
IFY67_03289	COG0640	Transcriptional regulator
IFY67_03290	COG0538	isocitrate dehydrogenase activity
IFY67_03291	COG3300	MHYT domain
IFY67_03291	COG5001	Diguanylate cyclase
IFY67_03292	COG3706	GGDEF domain
IFY67_03310	COG0616	signal peptide processing
IFY67_03312	COG1802	Transcriptional regulator
IFY67_03312	COG4626	Terminase
IFY67_03318	COG3772	lysozyme
IFY67_03323	COG1403	HNH endonuclease
IFY67_03325	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
IFY67_03338	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
IFY67_03339	COG0582	viral genome integration into host DNA
IFY67_03340	COG0538	isocitrate dehydrogenase activity
IFY67_03341	COG1187	pseudouridine synthase activity
IFY67_03345	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
IFY67_03349	COG2205	protein histidine kinase activity
IFY67_03350	COG2850	peptidyl-arginine hydroxylation
IFY67_03354	COG1177	transmembrane transport
IFY67_03357	COG0318	PFAM AMP-dependent synthetase and ligase
IFY67_03359	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
IFY67_03360	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
IFY67_03361	COG0698	ribose 5-phosphate isomerase
IFY67_03364	COG3395	kinase activity
IFY67_03367	COG2390	Transcriptional regulator
IFY67_03369	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
IFY67_03371	COG4591	ABC-type transport system involved in lipoprotein release permease component
IFY67_03372	COG4591	ABC-type transport system involved in lipoprotein release permease component
IFY67_03374	COG4591	ABC-type transport system involved in lipoprotein release permease component
IFY67_03375	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
IFY67_03376	COG1388	LysM domain
IFY67_03376	COG1376	ErfK ybiS ycfS ynhG family protein
IFY67_03378	COG1309	transcriptional regulator
IFY67_03380	COG3134	Outer membrane lipoprotein
IFY67_03381	COG1252	NADH dehydrogenase
IFY67_03386	COG5633	Lipoprotein
IFY67_03387	COG0537	adenosine 5'-monophosphoramidase activity
IFY67_03389	COG0084	hydrolase, TatD family'
IFY67_03390	COG0470	DNA polymerase III
IFY67_03392	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
IFY67_03393	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
IFY67_03394	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
IFY67_03397	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
IFY67_03401	COG1399	metal-binding, possibly nucleic acid-binding protein
IFY67_03404	COG1530	ribonuclease E activity
IFY67_03405	COG0583	DNA-binding transcription factor activity
IFY67_03406	COG2814	Major facilitator Superfamily
IFY67_03410	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
IFY67_03419	COG1560	Kdo2-lipid A biosynthetic process
IFY67_03423	COG5645	(Lipo)protein
IFY67_03431	COG3381	protein complex oligomerization
IFY67_03435	COG0583	DNA-binding transcription factor activity
IFY67_03438	COG1335	isochorismatase
IFY67_03440	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
IFY67_03441	COG1702	phosphate starvation-inducible protein PhoH
IFY67_03445	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
IFY67_03447	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
IFY67_03450	COG1309	transcriptional regulator
IFY67_03457	COG2233	PERMEase
IFY67_03463	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_03466	COG0531	amino acid
IFY67_03468	COG0174	glutamine synthetase
IFY67_03469	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
IFY67_03470	COG1396	sequence-specific DNA binding
IFY67_03470	COG1917	Cupin 2, conserved barrel domain protein
IFY67_03471	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_03472	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
IFY67_03473	COG0583	DNA-binding transcription factor activity
IFY67_03474	COG0473	3-isopropylmalate dehydrogenase activity
IFY67_03475	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
IFY67_03476	COG4638	Rieske (2fe-2S)
IFY67_03477	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_03478	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
IFY67_03480	COG2200	EAL domain
IFY67_03483	COG0670	Belongs to the BI1 family
IFY67_03486	COG2207	Transcriptional regulator
IFY67_03487	COG1881	PFAM PEBP family protein
IFY67_03490	COG1832	CoA-binding protein
IFY67_03492	COG0210	DNA helicase
IFY67_03493	COG0210	DNA helicase
IFY67_03494	COG3304	Inner membrane component domain
IFY67_03495	COG1289	transmembrane transporter activity
IFY67_03496	COG3070	regulator of competence-specific genes
IFY67_03500	COG1067	ATP-dependent peptidase activity
IFY67_03502	COG3009	Protein conserved in bacteria
IFY67_03503	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
IFY67_03503	COG3008	intermembrane lipid transfer
IFY67_03504	COG2995	paraquat-inducible protein a
IFY67_03505	COG0488	(ABC) transporter
IFY67_03507	COG3217	Mosc domain protein beta barrel domain protein
IFY67_03507	COG0633	Ferredoxin
IFY67_03510	COG0431	NADPH-dependent FMN reductase
IFY67_03511	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
IFY67_03512	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
IFY67_03513	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
IFY67_03515	COG0308	aminopeptidase N
IFY67_03517	COG1473	amidohydrolase
IFY67_03519	COG0814	amino acid
IFY67_03521	COG1522	sequence-specific DNA binding
IFY67_03523	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
IFY67_03524	COG1448	Aminotransferase
IFY67_03525	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
IFY67_03527	COG2989	Protein conserved in bacteria
IFY67_03529	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
IFY67_03530	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
IFY67_03532	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
IFY67_03533	COG1434	Gram-negative-bacterium-type cell wall biogenesis
IFY67_03534	COG3173	Aminoglycoside phosphotransferase
IFY67_03537	COG3214	Protein conserved in bacteria
IFY67_03540	COG0658	competence protein
IFY67_03540	COG2333	competence protein COMEC
IFY67_03542	COG0539	negative regulation of cytoplasmic translation
IFY67_03546	COG2323	membrane
IFY67_03547	COG1944	ATP diphosphatase activity
IFY67_03548	COG2116	formate transmembrane transporter activity
IFY67_03549	COG1882	Formate acetyltransferase
IFY67_03550	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
IFY67_03551	COG0477	Major facilitator Superfamily
IFY67_03552	COG3302	dmso reductase anchor subunit
IFY67_03553	COG0437	4 iron, 4 sulfur cluster binding
IFY67_03554	COG0243	molybdopterin cofactor binding
IFY67_03556	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
IFY67_03558	COG1674	ftsk spoiiie
IFY67_03558	COG1178	ABC-type Fe3 transport system permease component
IFY67_03560	COG0492	ferredoxin-NADP+ reductase activity
IFY67_03561	COG4988	ABC transporter
IFY67_03562	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
IFY67_03565	COG0542	response to heat
IFY67_03567	COG1278	Cold shock
IFY67_03570	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
IFY67_03571	COG3593	DNA synthesis involved in DNA repair
IFY67_03574	COG2431	L-lysine efflux transmembrane transporter activity
IFY67_03576	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
IFY67_03579	COG0028	Belongs to the TPP enzyme family
IFY67_03580	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
IFY67_03581	COG0702	epimerase
IFY67_03582	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
IFY67_03583	COG3023	N-Acetylmuramoyl-L-alanine amidase
IFY67_03584	COG2203	Gaf domain
IFY67_03584	COG5001	Diguanylate cyclase
IFY67_03584	COG3706	GGDEF domain
IFY67_03584	COG4251	negative regulation of phosphorylation
IFY67_03587	COG1126	abc transporter atp-binding protein
IFY67_03588	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
IFY67_03589	COG4215	(ABC) transporter
IFY67_03590	COG4160	amino acid transport
IFY67_03591	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
IFY67_03592	COG5002	protein histidine kinase activity
IFY67_03593	COG0745	RESPONSE REGULATOR receiver
IFY67_03596	COG1177	transmembrane transport
IFY67_03597	COG1176	ABC-type spermidine putrescine transport system, permease component I
IFY67_03598	COG3842	ATPase activity
IFY67_03599	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
IFY67_03602	COG0778	Nitroreductase
IFY67_03607	COG3226	Transcriptional regulator
IFY67_03608	COG0738	Major facilitator superfamily
IFY67_03609	COG0561	phosphatase activity
IFY67_03610	COG2814	Major facilitator Superfamily
IFY67_03611	COG0671	phosphoesterase, PA-phosphatase related
IFY67_03612	COG1349	DNA-binding transcription factor activity
IFY67_03613	COG1686	Belongs to the peptidase S11 family
IFY67_03615	COG0625	glutathione transferase activity
IFY67_03616	COG2133	pyrroloquinoline quinone binding
IFY67_03618	COG2223	nitrite transmembrane transporter activity
IFY67_03622	COG0747	negative chemotaxis
IFY67_03625	COG0303	'Molybdopterin
IFY67_03626	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
IFY67_03627	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
IFY67_03628	COG1882	Formate acetyltransferase
IFY67_03629	COG0561	phosphatase activity
IFY67_03631	COG1609	Transcriptional regulator
IFY67_03632	COG2271	Major facilitator Superfamily
IFY67_03634	COG0488	(ABC) transporter
IFY67_03635	COG2365	Tyrosine phosphatase family
IFY67_03636	COG1376	ErfK ybiS ycfS ynhG family protein
IFY67_03637	COG2188	Transcriptional regulator
IFY67_03638	COG2723	6-phospho-beta-galactosidase activity
IFY67_03639	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
IFY67_03642	COG2194	sulfuric ester hydrolase activity
IFY67_03643	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
IFY67_03646	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
IFY67_03647	COG0765	amino acid transport
IFY67_03648	COG1126	abc transporter atp-binding protein
IFY67_03649	COG0668	transmembrane transport
IFY67_03651	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
IFY67_03653	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
IFY67_03655	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
IFY67_03656	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
IFY67_03657	COG1199	ATP-dependent helicase activity
IFY67_03658	COG0513	Belongs to the DEAD box helicase family
IFY67_03659	COG3958	Transketolase
IFY67_03660	COG3959	Transketolase, thiamine diphosphate binding domain
IFY67_03661	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_03662	COG2271	Major facilitator Superfamily
IFY67_03663	COG0583	DNA-binding transcription factor activity
IFY67_03664	COG1309	transcriptional regulator
IFY67_03666	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
IFY67_03667	COG1131	(ABC) transporter
IFY67_03668	COG0842	Transport permease protein
IFY67_03669	COG0842	Transport permease protein
IFY67_03671	COG3568	Endonuclease Exonuclease Phosphatase
IFY67_03672	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
IFY67_03673	COG0392	lysyltransferase activity
IFY67_03674	COG0670	Belongs to the BI1 family
IFY67_03675	COG0314	molybdopterin synthase activity
IFY67_03677	COG0521	Mo-molybdopterin cofactor biosynthetic process
IFY67_03681	COG0745	RESPONSE REGULATOR receiver
IFY67_03682	COG0642	Histidine kinase
IFY67_03687	COG2226	methyltransferase
IFY67_03690	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
IFY67_03691	COG1881	PFAM PEBP family protein
IFY67_03698	COG4677	pectinesterase activity
IFY67_03700	COG0589	response to stress
IFY67_03702	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
IFY67_03708	COG0789	Transcriptional regulator
IFY67_03709	COG2200	EAL domain
IFY67_03714	COG0561	phosphatase activity
IFY67_03716	COG4149	molybdate abc transporter
IFY67_03717	COG0725	ABC transporter, periplasmic molybdate-binding protein
IFY67_03719	COG2005	Transcriptional regulator
IFY67_03719	COG3585	molybdate ion transport
IFY67_03720	COG1119	ATPase activity
IFY67_03722	COG1085	galactose-1-phosphate uridylyltransferase
IFY67_03724	COG2017	converts alpha-aldose to the beta-anomer
IFY67_03726	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
IFY67_03730	COG3201	nicotinamide mononucleotide transporter
IFY67_03731	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
IFY67_03739	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
IFY67_03740	COG2885	chlorophyll binding
IFY67_03742	COG3064	Membrane
IFY67_03743	COG0848	biopolymer transport protein
IFY67_03744	COG0811	peptide transport
IFY67_03745	COG0824	Thioesterase
IFY67_03746	COG3790	cyd operon protein YbgE
IFY67_03747	COG4890	Cyd operon protein YbgT
IFY67_03748	COG1294	oxidase, subunit
IFY67_03749	COG1271	oxidase subunit
IFY67_03750	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
IFY67_03752	COG0508	dehydrogenase complex catalyzes the overall conversion of
IFY67_03753	COG0567	Dehydrogenase, E1 component
IFY67_03754	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
IFY67_03755	COG1053	succinate dehydrogenase
IFY67_03756	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
IFY67_03757	COG2009	succinate dehydrogenase
IFY67_03764	COG1984	allophanate hydrolase subunit 2
IFY67_03765	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
IFY67_03768	COG0415	Belongs to the DNA photolyase family
IFY67_03774	COG2205	protein histidine kinase activity
IFY67_03775	COG0745	RESPONSE REGULATOR receiver
IFY67_03777	COG0033	Phosphoglucomutase
IFY67_03779	COG0596	Alpha beta hydrolase
IFY67_03782	COG0735	belongs to the Fur family
IFY67_03790	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
IFY67_03791	COG1940	carbohydrate kinase activity
IFY67_03791	COG1846	Transcriptional regulator
IFY67_03792	COG0647	UMP catabolic process
IFY67_03793	COG0367	asparagine synthase
IFY67_03801	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
IFY67_03803	COG1702	phosphate starvation-inducible protein PhoH
IFY67_03808	COG0765	amino acid transport
IFY67_03809	COG0765	amino acid transport
IFY67_03810	COG1126	abc transporter atp-binding protein
IFY67_03813	COG2888	peptidyl-tyrosine sulfation
IFY67_03816	COG1466	dna polymerase III delta subunit
IFY67_03819	COG0799	negative regulation of ribosome biogenesis
IFY67_03821	COG0768	penicillin binding
IFY67_03822	COG0772	Belongs to the SEDS family
IFY67_03823	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
IFY67_03824	COG1686	Belongs to the peptidase S11 family
IFY67_03827	COG0583	DNA-binding transcription factor activity
IFY67_03830	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
IFY67_03835	COG3069	C4-dicarboxylate transmembrane transporter activity
IFY67_03836	COG3719	Belongs to the RNase T2 family
IFY67_03837	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
IFY67_03841	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
IFY67_03842	COG0583	DNA-binding transcription factor activity
IFY67_03843	COG3969	phosphoadenosine phosphosulfate
IFY67_03844	COG1475	DNA binding
IFY67_03845	COG0436	Aminotransferase
IFY67_03850	COG1129	ABC transporter
IFY67_03851	COG1172	Belongs to the binding-protein-dependent transport system permease family
IFY67_03852	COG1172	Belongs to the binding-protein-dependent transport system permease family
IFY67_03854	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
IFY67_03857	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
IFY67_03859	COG0402	S-adenosylhomocysteine deaminase activity
IFY67_03861	COG0483	inositol monophosphate 1-phosphatase activity
IFY67_03862	COG2271	Major facilitator Superfamily
IFY67_03868	COG1172	Belongs to the binding-protein-dependent transport system permease family
IFY67_03869	COG1129	ABC transporter
IFY67_03870	COG0371	Dehydrogenase
IFY67_03871	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_03874	COG2879	small protein
IFY67_03875	COG1966	Carbon starvation protein
IFY67_03877	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_03878	COG1535	isochorismatase
IFY67_03878	COG3433	isochorismatase activity
IFY67_03879	COG1021	2,3-dihydroxybenzoate-AMP ligase
IFY67_03880	COG1169	isochorismate synthase
IFY67_03881	COG4592	Periplasmic binding protein
IFY67_03883	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
IFY67_03884	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
IFY67_03885	COG1120	ATPase activity
IFY67_03886	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
IFY67_03886	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
IFY67_03887	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
IFY67_03887	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
IFY67_03888	COG3251	PFAM MbtH domain protein
IFY67_03889	COG2382	esterase
IFY67_03890	COG4771	TonB-dependent receptor
IFY67_03891	COG2977	Belongs to the P-Pant transferase superfamily
IFY67_03892	COG3958	Transketolase
IFY67_03893	COG3959	Transketolase, thiamine diphosphate binding domain
IFY67_03894	COG2390	Transcriptional regulator
IFY67_03895	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
IFY67_03896	COG1879	ABC-type sugar transport system periplasmic component
IFY67_03898	COG1129	ABC transporter
IFY67_03899	COG1172	Belongs to the binding-protein-dependent transport system permease family
IFY67_03901	COG1028	Short-chain dehydrogenase reductase Sdr
IFY67_03905	COG0668	transmembrane transport
IFY67_03907	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
IFY67_03912	COG0747	negative chemotaxis
IFY67_03913	COG0601	transmembrane transport
IFY67_03914	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
IFY67_03915	COG0444	Belongs to the ABC transporter superfamily
IFY67_03916	COG4608	Belongs to the ABC transporter superfamily
IFY67_03917	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
IFY67_03918	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
IFY67_03919	COG4221	oxidoreductase activity
IFY67_03921	COG4215	(ABC) transporter
IFY67_03922	COG0765	amino acid transport
IFY67_03923	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
IFY67_03926	COG0697	spore germination
IFY67_03929	COG4608	Belongs to the ABC transporter superfamily
IFY67_03930	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
IFY67_03932	COG4166	transmembrane transport
IFY67_03934	COG3698	Phosphodiester glycosidase
IFY67_03944	COG2315	Protein conserved in bacteria
IFY67_03945	COG0778	Nitroreductase
IFY67_03947	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
IFY67_03949	COG3716	PTS system mannose fructose sorbose family IID component
IFY67_03950	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
IFY67_03951	COG2222	sugar isomerase
IFY67_03952	COG3933	PFAM sigma-54 factor interaction domain-containing protein
IFY67_03952	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
IFY67_03955	COG0477	Major facilitator Superfamily
IFY67_03956	COG0668	transmembrane transport
IFY67_03957	COG1609	Transcriptional regulator
IFY67_03959	COG0673	inositol 2-dehydrogenase activity
IFY67_03961	COG2211	Major facilitator Superfamily
IFY67_03962	COG1113	amino acid transport
IFY67_03965	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_03966	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
IFY67_03968	COG0531	amino acid
IFY67_03971	COG4680	protein conserved in bacteria
IFY67_03980	COG0667	Aldo Keto reductase
IFY67_03981	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
IFY67_03982	COG1473	amidohydrolase
IFY67_03986	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
IFY67_03988	COG1566	PFAM secretion protein HlyD family protein
IFY67_03997	COG4211	Belongs to the binding-protein-dependent transport system permease family
IFY67_03999	COG1129	ABC transporter
IFY67_04002	COG0673	inositol 2-dehydrogenase activity
IFY67_04008	COG3104	oligopeptide transport
IFY67_04009	COG1982	Orn Lys Arg decarboxylase major
IFY67_04010	COG0531	amino acid
IFY67_04011	COG3710	Transcriptional regulator
IFY67_04013	COG1560	Kdo2-lipid A biosynthetic process
IFY67_04016	COG3188	usher protein
IFY67_04018	COG3121	Chaperone
IFY67_04019	COG3539	Fimbrial protein
IFY67_04027	COG3344	reverse transcriptase
IFY67_04058	COG3772	lysozyme
IFY67_04073	COG0305	Participates in initiation and elongation during chromosome replication
IFY67_04085	COG0582	viral genome integration into host DNA
IFY67_04088	COG2501	S4 domain
IFY67_04090	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
IFY67_04093	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
IFY67_04094	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
IFY67_04097	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
IFY67_04098	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
IFY67_04099	COG2755	lipolytic protein G-D-S-L family
IFY67_04100	COG0300	oxidoreductase activity
IFY67_04101	COG3118	belongs to the thioredoxin family
IFY67_04102	COG0390	transport system, permease component
IFY67_04103	COG4619	ABC transporter
IFY67_04104	COG0330	HflC and HflK could
IFY67_04105	COG1585	Membrane protein implicated in regulation of membrane protease activity
IFY67_04108	COG3735	TraB family
IFY67_04109	COG3735	TraB family
IFY67_04110	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
IFY67_04112	COG2223	nitrite transmembrane transporter activity
IFY67_04113	COG4651	solute:proton antiporter activity
IFY67_04113	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
IFY67_04114	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
IFY67_04122	COG2832	Protein of unknown function (DUF454)
IFY67_04123	COG3923	Primosomal replication protein n
IFY67_04125	COG5464	transposase or invertase
IFY67_04126	COG1196	nuclear chromosome segregation
IFY67_04126	COG3264	Mechanosensitive ion channel
IFY67_04127	COG1309	transcriptional regulator
IFY67_04128	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
IFY67_04129	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
IFY67_04132	COG0110	maltose O-acetyltransferase activity
IFY67_04141	COG1874	Beta-galactosidase
IFY67_04142	COG3867	Arabinogalactan endo-beta-1,4-galactanase
IFY67_04143	COG3833	ABC-type maltose transport systems, permease component
IFY67_04144	COG1175	transmembrane transport
IFY67_04145	COG2182	Extracellular solute-binding protein
IFY67_04147	COG4943	cyclic-guanylate-specific phosphodiesterase activity
IFY67_04150	COG2364	Membrane
IFY67_04156	COG3695	enzyme binding
IFY67_04157	COG3126	Type III secretion system lipoprotein chaperone (YscW)
IFY67_04158	COG1946	Acyl-CoA thioesterase
IFY67_04159	COG0004	ammonium transporteR
IFY67_04160	COG0347	Belongs to the P(II) protein family
IFY67_04161	COG1132	(ABC) transporter
IFY67_04162	COG1132	(ABC) transporter
IFY67_04163	COG1522	sequence-specific DNA binding
IFY67_04166	COG4533	DNA binding
IFY67_04168	COG0824	Thioesterase
IFY67_04169	COG1555	photosystem II stabilization
IFY67_04170	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
IFY67_04171	COG0776	regulation of translation
IFY67_04172	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
IFY67_04176	COG0271	Belongs to the BolA IbaG family
IFY67_04177	COG3056	Lipoprotein
IFY67_04178	COG2223	nitrite transmembrane transporter activity
IFY67_04179	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
IFY67_04180	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
IFY67_04181	COG1845	cytochrome c oxidase, subunit III
IFY67_04182	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
IFY67_04185	COG1414	Transcriptional regulator
IFY67_04186	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
IFY67_04187	COG1053	succinate dehydrogenase
IFY67_04189	COG1053	succinate dehydrogenase
IFY67_04192	COG0673	inositol 2-dehydrogenase activity
IFY67_04193	COG2814	Major facilitator Superfamily
IFY67_04195	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
IFY67_04201	COG0142	geranyltranstransferase activity
IFY67_04204	COG0667	Aldo Keto reductase
IFY67_04205	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
IFY67_04209	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
IFY67_04209	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
IFY67_04211	COG4238	major outer membrane lipoprotein
IFY67_04215	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
IFY67_04216	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
IFY67_04217	COG1862	Preprotein translocase
IFY67_04221	COG0450	alkyl hydroperoxide reductase
IFY67_04222	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
IFY67_04225	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
IFY67_04227	COG1228	amidohydrolase
IFY67_04229	COG1335	isochorismatase
IFY67_04231	COG0583	DNA-binding transcription factor activity
IFY67_04232	COG0366	Alpha amylase catalytic
IFY67_04237	COG0420	3'-5' exonuclease activity
IFY67_04238	COG0420	3'-5' exonuclease activity
IFY67_04239	COG0419	ATPase involved in DNA repair
IFY67_04240	COG1940	carbohydrate kinase activity
IFY67_04243	COG4126	flavin adenine dinucleotide binding
IFY67_04245	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
IFY67_04246	COG3416	Protein conserved in bacteria
IFY67_04248	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
IFY67_04250	COG1785	Belongs to the alkaline phosphatase family
IFY67_04251	COG1785	Belongs to the alkaline phosphatase family
IFY67_04259	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
IFY67_04260	COG1335	isochorismatase
IFY67_04261	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
IFY67_04262	COG0113	porphobilinogen synthase activity
IFY67_04263	COG1943	Transposase
IFY67_04265	COG2175	clavaminate synthase activity
IFY67_04266	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
IFY67_04267	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
IFY67_04268	COG4521	taurine ABC transporter
IFY67_04269	COG2040	homocysteine
IFY67_04270	COG0833	amino acid
IFY67_04272	COG4303	Ethanolamine ammonia lyase large subunit
IFY67_04273	COG4302	ethanolamine ammonia-lyase activity
IFY67_04280	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
IFY67_04281	COG1126	abc transporter atp-binding protein
IFY67_04282	COG0765	amino acid transport
IFY67_04283	COG0765	amino acid transport
IFY67_04286	COG3188	usher protein
IFY67_04287	COG3188	usher protein
IFY67_04292	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
IFY67_04294	COG3639	organic phosphonate transmembrane transporter activity
IFY67_04297	COG0791	NLP P60 protein
IFY67_04303	COG0765	amino acid transport
IFY67_04305	COG4221	oxidoreductase activity
IFY67_04308	COG0436	Aminotransferase
IFY67_04309	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
IFY67_04310	COG1984	allophanate hydrolase subunit 2
IFY67_04313	COG0697	spore germination
IFY67_04314	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
IFY67_04315	COG0439	Biotin carboxylase
IFY67_04316	COG0511	ligase activity, forming carbon-carbon bonds
IFY67_04318	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
IFY67_04319	COG0022	dehydrogenase e1 component
IFY67_04320	COG0508	dehydrogenase complex catalyzes the overall conversion of
IFY67_04321	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
IFY67_04323	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
IFY67_04326	COG0579	oxidoreductase
IFY67_04327	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_04328	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
IFY67_04329	COG1113	amino acid transport
IFY67_04330	COG1113	amino acid transport
IFY67_04331	COG1802	Transcriptional regulator
IFY67_04335	COG2195	Cleaves the N-terminal amino acid of tripeptides
IFY67_04336	COG0454	-acetyltransferase
IFY67_04340	COG2991	Protein conserved in bacteria
IFY67_04344	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
IFY67_04345	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
IFY67_04348	COG3034	peptidoglycan biosynthetic process
IFY67_04349	COG0121	glutamine amidotransferase
IFY67_04352	COG1960	acyl-CoA dehydrogenase activity
IFY67_04353	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
IFY67_04355	COG0583	DNA-binding transcription factor activity
IFY67_04357	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
IFY67_04359	COG2226	methyltransferase
IFY67_04361	COG0741	lytic transglycosylase activity
IFY67_04361	COG1388	LysM domain
IFY67_04362	COG2226	methyltransferase
IFY67_04364	COG2814	Major facilitator Superfamily
IFY67_04365	COG0583	DNA-binding transcription factor activity
IFY67_04366	COG0656	L-ascorbic acid biosynthetic process
IFY67_04373	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
IFY67_04375	COG2011	ABC-type metal ion transport system permease component
IFY67_04376	COG1464	Belongs to the NlpA lipoprotein family
IFY67_04378	COG1720	tRNA m6t6A37 methyltransferase activity
IFY67_04380	COG0791	NLP P60 protein
IFY67_04381	COG3015	lipoprotein NlpE involved in copper resistance
IFY67_04382	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
IFY67_04385	COG4568	rho-dependent transcription termination
IFY67_04387	COG0346	lactoylglutathione lyase activity
IFY67_04388	COG1982	Orn Lys Arg decarboxylase major
IFY67_04396	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
IFY67_04398	COG0750	zinc metalloprotease
IFY67_04399	COG0575	Belongs to the CDS family
IFY67_04401	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
IFY67_04406	COG0024	Methionine aminopeptidase
IFY67_04407	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
IFY67_04410	COG3835	regulator
IFY67_04411	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
IFY67_04415	COG2860	membrane
IFY67_04420	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
IFY67_04421	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
IFY67_04422	COG1120	ATPase activity
IFY67_04423	COG4774	siderophore transport
IFY67_04424	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
IFY67_04440	COG1643	Atp-dependent helicase
IFY67_04441	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
IFY67_04445	COG0617	tRNA 3'-terminal CCA addition
IFY67_04446	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
IFY67_04450	COG0726	polysaccharide deacetylase
IFY67_04451	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
IFY67_04452	COG0842	Transport permease protein
IFY67_04453	COG1131	(ABC) transporter
IFY67_04454	COG0288	reversible hydration of carbon dioxide
IFY67_04456	COG4993	Dehydrogenase
IFY67_04457	COG2132	Multicopper oxidase
IFY67_04466	COG3064	Membrane
IFY67_04469	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
IFY67_04470	COG0508	dehydrogenase complex catalyzes the overall conversion of
IFY67_04471	COG0508	dehydrogenase complex catalyzes the overall conversion of
IFY67_04472	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
IFY67_04473	COG2186	Transcriptional regulator
IFY67_04474	COG1113	amino acid transport
IFY67_04475	COG2211	Major facilitator Superfamily
IFY67_04476	COG3940	Belongs to the glycosyl hydrolase 43 family
IFY67_04477	COG3725	Membrane protein required for beta-lactamase induction
IFY67_04478	COG3023	N-Acetylmuramoyl-L-alanine amidase
IFY67_04480	COG4969	Belongs to the N-Me-Phe pilin family
IFY67_04481	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
IFY67_04482	COG1459	type II secretion system
IFY67_04487	COG0494	nUDIX hydrolase
IFY67_04491	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
IFY67_04492	COG0849	cell division
IFY67_04497	COG0772	Belongs to the SEDS family
IFY67_04500	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
IFY67_04501	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
IFY67_04502	COG0768	penicillin binding
IFY67_04506	COG1609	Transcriptional regulator
IFY67_04508	COG0028	Belongs to the TPP enzyme family
IFY67_04516	COG0738	Major facilitator superfamily
IFY67_04518	COG0583	DNA-binding transcription factor activity
IFY67_04519	COG2271	Major facilitator Superfamily
IFY67_04520	COG2814	Major facilitator Superfamily
IFY67_04524	COG1178	ABC-type Fe3 transport system permease component
IFY67_04526	COG0586	Pfam SNARE associated Golgi protein
IFY67_04530	COG0235	Class ii aldolase
IFY67_04531	COG0417	DNA replication proofreading
IFY67_04533	COG0564	pseudouridine synthase activity
IFY67_04535	COG3493	citrate carrier protein
IFY67_04538	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
IFY67_04539	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
IFY67_04541	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
IFY67_04551	COG0505	Belongs to the CarA family
IFY67_04564	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
IFY67_04570	COG1047	Peptidyl-prolyl cis-trans
IFY67_04573	COG0196	riboflavin kinase activity
IFY67_04575	COG0583	DNA-binding transcription factor activity
IFY67_04580	COG4735	regulation of single-species biofilm formation
IFY67_04581	COG1584	GPR1 FUN34 yaaH family protein
IFY67_04582	COG0477	Major facilitator Superfamily
IFY67_04583	COG0521	Mo-molybdopterin cofactor biosynthetic process
IFY67_04584	COG0521	Mo-molybdopterin cofactor biosynthetic process
IFY67_04585	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
IFY67_04586	COG1115	amino acid carrier protein
IFY67_04589	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
IFY67_04591	COG0527	aspartate kinase activity
IFY67_04591	COG0460	homoserine dehydrogenase
IFY67_04592	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
IFY67_04593	COG0745	RESPONSE REGULATOR receiver
IFY67_04594	COG4452	Inner membrane protein CreD
IFY67_04595	COG2205	protein histidine kinase activity
IFY67_04596	COG0745	RESPONSE REGULATOR receiver
IFY67_04597	COG3045	CreA protein
IFY67_04598	COG3708	Transcriptional regulator
IFY67_04598	COG2207	Transcriptional regulator
IFY67_04599	COG3708	Transcriptional regulator
IFY67_04599	COG2207	Transcriptional regulator
IFY67_04603	COG0741	lytic transglycosylase activity
IFY67_04604	COG0488	(ABC) transporter
IFY67_04606	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
IFY67_04607	COG0560	Phosphoserine phosphatase
IFY67_04608	COG3726	membrane protein affecting hemolysin expression
IFY67_04614	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
IFY67_04615	COG0084	hydrolase, TatD family'
IFY67_04616	COG4667	esterase of the alpha-beta hydrolase superfamily
IFY67_04618	COG2823	Periplasmic or secreted lipoprotein
IFY67_04620	COG1011	Hydrolase
IFY67_04621	COG0456	acetyltransferase
IFY67_04622	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
IFY67_04629	COG3706	GGDEF domain
IFY67_04630	COG4114	ferric iron reductase
IFY67_04631	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
IFY67_04631	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
IFY67_04632	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
IFY67_04633	COG2197	response regulator
IFY67_04634	COG2197	response regulator
IFY67_04638	COG2966	Psort location CytoplasmicMembrane, score
IFY67_04641	COG1484	DNA-dependent DNA replication
IFY67_04644	COG5464	transposase or invertase
IFY67_04646	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
IFY67_04649	COG3715	PTS system
IFY67_04652	COG3933	PFAM sigma-54 factor interaction domain-containing protein
IFY67_04652	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
IFY67_04653	COG1214	PFAM Peptidase M22, glycoprotease
IFY67_04653	COG0456	acetyltransferase
IFY67_04655	COG1737	Transcriptional regulator
IFY67_04656	COG0800	Aldolase
IFY67_04657	COG3734	2-keto-3-deoxy-galactonokinase
IFY67_04660	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
IFY67_04663	COG0531	amino acid
IFY67_04664	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_04665	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
IFY67_04668	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
IFY67_04668	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
IFY67_04671	COG1846	Transcriptional regulator
IFY67_04672	COG0179	Fumarylacetoacetate (FAA) hydrolase
IFY67_04674	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_04675	COG3384	dioxygenase
IFY67_04677	COG3971	2-oxopent-4-enoate hydratase activity
IFY67_04681	COG2368	4-hydroxyphenylacetate
IFY67_04682	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
IFY67_04685	COG1966	Carbon starvation protein
IFY67_04686	COG2879	small protein
IFY67_04687	COG0523	cobalamin synthesis protein
IFY67_04689	COG1012	belongs to the aldehyde dehydrogenase family
IFY67_04690	COG5464	transposase or invertase
IFY67_04691	COG1917	Cupin 2, conserved barrel domain protein
IFY67_04691	COG2207	Transcriptional regulator
IFY67_04693	COG2733	membrane
IFY67_04696	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
IFY67_04697	COG1924	4 iron, 4 sulfur cluster binding
IFY67_04700	COG1566	PFAM secretion protein HlyD family protein
IFY67_04702	COG5457	Domain of unknown function (DUF1127)
IFY67_04703	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
IFY67_04705	COG0583	DNA-binding transcription factor activity
IFY67_04706	COG2249	NAD(P)H dehydrogenase (quinone) activity
IFY67_04708	COG1172	Belongs to the binding-protein-dependent transport system permease family
IFY67_04709	COG1129	ABC transporter
IFY67_04710	COG1879	ABC-type sugar transport system periplasmic component
IFY67_04712	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
IFY67_04713	COG0842	Transport permease protein
IFY67_04713	COG1129	ABC transporter
IFY67_04714	COG0842	Transport permease protein
IFY67_04719	COG2850	peptidyl-arginine hydroxylation
IFY67_04722	COG5002	protein histidine kinase activity
IFY67_04723	COG0745	RESPONSE REGULATOR receiver
IFY67_04724	COG1538	Outer membrane efflux protein
IFY67_04725	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
IFY67_04726	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
IFY67_04727	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
IFY67_04729	COG3040	lipid binding
IFY67_04730	COG0789	Transcriptional regulator
IFY67_04731	COG3631	Ketosteroid isomerase-related protein
IFY67_04732	COG0300	oxidoreductase activity
IFY67_04735	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
IFY67_04739	COG3272	Protein of unknown function (DUF1722)
IFY67_04740	COG4580	involved in the transport of maltose and maltodextrins
IFY67_04741	COG2115	Belongs to the xylose isomerase family
IFY67_04742	COG2211	Major facilitator Superfamily
IFY67_04743	COG3507	Belongs to the glycosyl hydrolase 43 family
IFY67_04750	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
IFY67_04750	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
IFY67_04751	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
IFY67_04754	COG1401	restriction endodeoxyribonuclease activity
IFY67_04759	COG0582	viral genome integration into host DNA
IFY67_04761	COG0288	reversible hydration of carbon dioxide
IFY67_04762	COG0659	secondary active sulfate transmembrane transporter activity
IFY67_04763	COG1064	alcohol dehydrogenase
IFY67_04764	COG1175	transmembrane transport
IFY67_04765	COG0395	ABC-type sugar transport system, permease component
IFY67_04766	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
IFY67_04767	COG3842	ATPase activity
IFY67_04770	COG1082	Xylose isomerase domain protein TIM barrel
IFY67_04772	COG3962	Belongs to the TPP enzyme family
IFY67_04773	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
IFY67_04774	COG0837	glucose binding
IFY67_04774	COG1737	Transcriptional regulator
IFY67_04775	COG3718	enzyme involved in inositol metabolism
IFY67_04778	COG0433	COG0433 Predicted ATPase
IFY67_04779	COG0795	lipopolysaccharide-transporting ATPase activity
IFY67_04780	COG0795	lipopolysaccharide-transporting ATPase activity
IFY67_04782	COG2927	DNA polymerase III (CHI subunit)
IFY67_04783	COG0525	valine-tRNA ligase activity
IFY67_04788	COG2731	YhcH YjgK YiaL family protein
IFY67_04794	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
IFY67_04794	COG1263	PTS System
IFY67_04795	COG0366	Alpha amylase catalytic
IFY67_04796	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
IFY67_04797	COG1486	melibiose metabolic process
IFY67_04801	COG0602	queuosine metabolic process
IFY67_04802	COG2026	Addiction module toxin, RelE StbE family
IFY67_04803	COG3077	Addiction module antitoxin, RelB DinJ family
IFY67_04804	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
IFY67_04804	COG3711	transcriptional antiterminator
IFY67_04805	COG2706	6-phosphogluconolactonase activity
IFY67_04808	COG3964	amidohydrolase
IFY67_04815	COG0312	modulator of DNA gyrase
IFY67_04819	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
IFY67_04821	COG1172	Belongs to the binding-protein-dependent transport system permease family
IFY67_04822	COG1172	Belongs to the binding-protein-dependent transport system permease family
IFY67_04823	COG1129	ABC transporter
IFY67_04824	COG1879	ABC-type sugar transport system periplasmic component
IFY67_04828	COG2105	PFAM AIG2 family protein
IFY67_04829	COG2911	Protein conserved in bacteria
IFY67_04830	COG0729	surface antigen
IFY67_04832	COG1253	flavin adenine dinucleotide binding
IFY67_04834	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
IFY67_04837	COG1733	regulation of RNA biosynthetic process
IFY67_04838	COG0702	epimerase
IFY67_04840	COG0697	spore germination
IFY67_04842	COG1113	amino acid transport
IFY67_04843	COG0545	Peptidyl-prolyl cis-trans isomerase
IFY67_04844	COG3061	Opacity-associated protein A
IFY67_04846	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
IFY67_04847	COG2965	DNA replication, synthesis of RNA primer
IFY67_04860	COG1073	alpha beta
IFY67_04861	COG3650	response to hydrogen peroxide
IFY67_04863	COG1960	acyl-CoA dehydrogenase activity
IFY67_04864	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
IFY67_04865	COG0557	exoribonuclease II activity
IFY67_04868	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
IFY67_04870	COG0330	HflC and HflK could
IFY67_04871	COG0330	HflC and HflK could
IFY67_04872	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
IFY67_04876	COG0860	N-Acetylmuramoyl-L-alanine amidase
IFY67_04877	COG0802	atpase or kinase
IFY67_04878	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
IFY67_04878	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
IFY67_04879	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
IFY67_04883	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
IFY67_04887	COG1511	domain protein
IFY67_04887	COG3264	Mechanosensitive ion channel
IFY67_04890	COG1053	succinate dehydrogenase
IFY67_04891	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
IFY67_04895	COG2076	Multidrug Resistance protein
IFY67_04896	COG5510	response to toxic substance
IFY67_04899	COG1509	lysine 2,3-aminomutase activity
IFY67_04912	COG0531	amino acid
IFY67_04913	COG3030	protein affecting phage T7 exclusion by the F plasmid
IFY67_04914	COG1027	Aspartate ammonia-lyase
IFY67_04915	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
IFY67_04918	COG1309	transcriptional regulator
IFY67_04924	COG0457	Tetratricopeptide repeat
IFY67_04925	COG0726	polysaccharide deacetylase
IFY67_04925	COG1649	PFAM Uncharacterised BCR, COG1649
IFY67_04926	COG1215	transferase activity, transferring glycosyl groups
IFY67_04929	COG0861	Integral membrane protein TerC family
IFY67_04935	COG1486	melibiose metabolic process
IFY67_04936	COG2169	Transcriptional regulator
IFY67_04938	COG2824	Alkylphosphonate utilization operon protein PhnA
IFY67_04939	COG2764	glyoxalase bleomycin resistance protein dioxygenase
IFY67_04940	COG2188	Transcriptional regulator
IFY67_04941	COG3624	Phosphonate C-P lyase system protein PhnG
IFY67_04942	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
IFY67_04943	COG3626	phosphonate metabolism
IFY67_04944	COG3627	carbon phosphorus lyase activity
IFY67_04945	COG4107	phosphonate C-P lyase system protein PhnK
IFY67_04946	COG4778	phosphonate C-P lyase system protein PhnL
IFY67_04947	COG3454	Phosphonate metabolism
IFY67_04949	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
IFY67_04951	COG0784	Response regulator, receiver
IFY67_04951	COG4191	Histidine kinase
IFY67_04952	COG1129	ABC transporter
IFY67_04953	COG1172	Belongs to the binding-protein-dependent transport system permease family
IFY67_04959	COG3383	formate dehydrogenase (NAD+) activity
IFY67_04960	COG3383	formate dehydrogenase (NAD+) activity
IFY67_04961	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
IFY67_04962	COG1301	dicarboxylic acid transport
IFY67_04963	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
IFY67_04964	COG3162	membrane
IFY67_04971	COG3539	Fimbrial protein
IFY67_04972	COG1346	cytolysis
IFY67_04973	COG1380	Effector of murein hydrolase LrgA
IFY67_04974	COG0583	DNA-binding transcription factor activity
IFY67_04975	COG0025	NhaP-type Na H and K H
IFY67_04976	COG2252	PERMEase
IFY67_04977	COG0625	glutathione transferase activity
IFY67_04978	COG0789	Transcriptional regulator
IFY67_04980	COG4943	cyclic-guanylate-specific phosphodiesterase activity
IFY67_04986	COG1234	tRNA 3'-trailer cleavage
IFY67_04987	COG1609	Transcriptional regulator
IFY67_04988	COG0483	inositol monophosphate 1-phosphatase activity
IFY67_04990	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
IFY67_04993	COG4771	TonB-dependent receptor
IFY67_04994	COG4771	TonB-dependent receptor
IFY67_04995	COG0741	lytic transglycosylase activity
IFY67_04998	COG2315	Protein conserved in bacteria
IFY67_04999	COG0432	Pfam Uncharacterised protein family UPF0047
IFY67_05003	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
IFY67_05004	COG0305	Participates in initiation and elongation during chromosome replication
IFY67_05007	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
IFY67_05009	COG0735	belongs to the Fur family
IFY67_05010	COG3237	CsbD-like
IFY67_05011	COG0534	Mate efflux family protein
IFY67_05013	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
IFY67_05027	COG0251	oxidation-reduction process
IFY67_05029	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
IFY67_05031	COG0527	aspartate kinase activity
IFY67_05041	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
IFY67_05043	COG0456	acetyltransferase
IFY67_05050	COG0151	Belongs to the GarS family
IFY67_05052	COG4191	Histidine kinase
IFY67_05053	COG3678	ATP-independent chaperone mediated protein folding
IFY67_05060	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
IFY67_05063	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
IFY67_05064	COG2104	thiamine diphosphate biosynthetic process
IFY67_05067	COG3706	GGDEF domain
IFY67_05069	COG1447	Phosphotransferase system cellobiose-specific component IIA
IFY67_05070	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
IFY67_05077	COG0250	Participates in transcription elongation, termination and antitermination
IFY67_05092	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
IFY67_05094	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
IFY67_05095	COG1739	Uncharacterized protein family UPF0029
IFY67_05103	COG0805	protein transport
IFY67_05107	COG3165	ubiquinone biosynthetic process from chorismate
IFY67_05113	COG0583	DNA-binding transcription factor activity
IFY67_05114	COG0697	spore germination
IFY67_05115	COG0561	phosphatase activity
IFY67_05116	COG2267	carboxylic ester hydrolase activity
IFY67_05117	COG1280	lysine exporter protein (LysE YggA)
IFY67_05119	COG1280	lysine exporter protein (LysE YggA)
IFY67_05125	COG0210	DNA helicase
IFY67_05126	COG1011	Hydrolase
IFY67_05132	COG3072	Adenylate cyclase
IFY67_05135	COG2959	enzyme of heme biosynthesis
IFY67_05136	COG3071	HemY protein
IFY67_05145	COG2244	polysaccharide biosynthetic process
IFY67_05146	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
IFY67_05147	COG0456	acetyltransferase
IFY67_05148	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
IFY67_05149	COG1088	dTDP-glucose 4,6-dehydratase activity
IFY67_05150	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
IFY67_05151	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
IFY67_05153	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
IFY67_05154	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
IFY67_05155	COG3118	belongs to the thioredoxin family
IFY67_05161	COG1811	Na channel or pump
IFY67_05163	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
IFY67_05164	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
IFY67_05166	COG0583	DNA-binding transcription factor activity
IFY67_05167	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
IFY67_05170	COG3978	acetolactate synthase activity
IFY67_05173	COG3085	chromosome segregation
IFY67_05188	COG0583	DNA-binding transcription factor activity
IFY67_05191	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
IFY67_05194	COG3443	Belongs to the bacterial solute-binding protein 9 family
IFY67_05195	COG2207	Transcriptional regulator
IFY67_05197	COG0371	Dehydrogenase
IFY67_05198	COG0697	spore germination
IFY67_05200	COG0583	DNA-binding transcription factor activity
IFY67_05202	COG0737	Belongs to the 5'-nucleotidase family
IFY67_05204	COG0460	homoserine dehydrogenase
IFY67_05204	COG0527	aspartate kinase activity
IFY67_05205	COG0626	cystathionine gamma-synthase activity
IFY67_05208	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
IFY67_05209	COG1609	Transcriptional regulator
IFY67_05210	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
IFY67_05213	COG1575	Belongs to the MenA family. Type 1 subfamily
IFY67_05217	COG3678	ATP-independent chaperone mediated protein folding
IFY67_05218	COG0745	RESPONSE REGULATOR receiver
IFY67_05219	COG2205	protein histidine kinase activity
IFY67_05220	COG2258	MOSC domain
IFY67_05221	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
IFY67_05229	COG1129	ABC transporter
IFY67_05230	COG1172	Belongs to the binding-protein-dependent transport system permease family
IFY67_05231	COG1172	Belongs to the binding-protein-dependent transport system permease family
IFY67_05232	COG1454	alcohol dehydrogenase
IFY67_05234	COG2211	Major facilitator Superfamily
IFY67_05247	COG0205	6-phosphofructokinase activity
IFY67_05250	COG3383	formate dehydrogenase (NAD+) activity
IFY67_05250	COG0243	molybdopterin cofactor binding
IFY67_05251	COG3383	formate dehydrogenase (NAD+) activity
IFY67_05251	COG0243	molybdopterin cofactor binding
IFY67_05252	COG0437	4 iron, 4 sulfur cluster binding
IFY67_05253	COG2864	formate dehydrogenase
IFY67_05256	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
IFY67_05258	COG0456	acetyltransferase
IFY67_05261	COG1011	Hydrolase
IFY67_05264	COG3852	Histidine kinase
IFY67_05266	COG0635	Involved in the biosynthesis of porphyrin-containing compound
IFY67_05267	COG0635	Involved in the biosynthesis of porphyrin-containing compound
IFY67_05271	COG0204	Acyl-transferase
IFY67_05273	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
IFY67_05274	COG3084	Protein conserved in bacteria
IFY67_05276	COG1763	Mo-molybdopterin cofactor biosynthetic process
IFY67_05281	COG2186	Transcriptional regulator
IFY67_05282	COG0477	Major facilitator Superfamily
IFY67_05283	COG1609	Transcriptional regulator
IFY67_05284	COG1609	Transcriptional regulator
IFY67_05285	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
IFY67_05287	COG1172	Belongs to the binding-protein-dependent transport system permease family
IFY67_05288	COG1129	ABC transporter
IFY67_05294	COG1522	sequence-specific DNA binding
IFY67_05295	COG0716	FMN binding
IFY67_05298	COG3312	ion transport
IFY67_05308	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
IFY67_05309	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
IFY67_05310	COG0573	inorganic phosphate transmembrane transporter activity
IFY67_05311	COG0581	inorganic phosphate transmembrane transporter activity
IFY67_05312	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
IFY67_05313	COG0704	Plays a role in the regulation of phosphate uptake
IFY67_05315	COG2382	esterase
IFY67_05316	COG0363	glucosamine-6-phosphate deaminase activity
IFY67_05317	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
IFY67_05318	COG2252	PERMEase
IFY67_05319	COG0431	NADPH-dependent FMN reductase
IFY67_05320	COG2091	lysine biosynthetic process via aminoadipic acid
IFY67_05328	COG1192	Involved in chromosome partitioning
IFY67_05343	COG2801	Transposase and inactivated derivatives
IFY67_05350	COG0697	spore germination
IFY67_05444	COG5499	transcription regulator containing HTH domain
IFY67_05456	COG1475	DNA binding
IFY67_05480	COG2199	diguanylate cyclase activity
IFY67_05480	COG2203	Gaf domain
IFY67_05482	COG4943	cyclic-guanylate-specific phosphodiesterase activity
IFY67_05484	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
IFY67_05494	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
IFY67_05502	COG0739	heme binding
IFY67_05504	COG2132	Multicopper oxidase
IFY67_05505	COG2132	Multicopper oxidase
IFY67_05506	COG3667	copper resistance
IFY67_05507	COG2372	response to copper ion
IFY67_05508	COG1276	copper resistance
IFY67_05509	COG0745	RESPONSE REGULATOR receiver
IFY67_05510	COG2205	protein histidine kinase activity
IFY67_05513	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
IFY67_05515	COG0431	NADPH-dependent FMN reductase
IFY67_05523	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
IFY67_05538	COG0501	Belongs to the peptidase M48B family
IFY67_05542	COG0542	response to heat
IFY67_05543	COG0071	Belongs to the small heat shock protein (HSP20) family
IFY67_05546	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
IFY67_05551	COG0683	leucine binding
IFY67_05552	COG0784	Response regulator, receiver
IFY67_05552	COG5002	protein histidine kinase activity
IFY67_05552	COG2198	Histidine kinase
IFY67_05553	COG0745	RESPONSE REGULATOR receiver
IFY67_05558	COG2801	Transposase and inactivated derivatives
IFY67_05561	COG4372	Transposase
IFY67_05574	COG5499	transcription regulator containing HTH domain
IFY67_05587	COG1475	DNA binding
IFY67_05597	COG3344	reverse transcriptase
IFY67_05606	COG2801	Transposase and inactivated derivatives
IFY67_05607	COG2963	transposase activity