AM488_00010 PF15731 AM488_00010 AM488_00015 PF06296 AM488_00015 AM488_00050 PF01935 Domain of unknown function DUF87 AM488_00050 PF12696 TraM recognition site of TraD and TraG AM488_00055 PF00816 H-NS histone family AM488_00060 PF07963 Prokaryotic N-terminal methylation motif AM488_00060 PF08805 PilS N terminal AM488_00065 PF08805 PilS N terminal AM488_00095 PF04851 Type III restriction enzyme, res subunit AM488_00100 PF01555 DNA methylase AM488_00110 PF07728 AAA domain (dynein-related subfamily) AM488_00130 PF02086 D12 class N6 adenine-specific DNA methyltransferase AM488_00140 PF12796 Ankyrin repeats (3 copies) AM488_00145 PF12796 Ankyrin repeats (3 copies) AM488_00180 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AM488_00220 PF08805 PilS N terminal AM488_00255 PF01266 FAD dependent oxidoreductase AM488_00260 PF04293 AM488_00260 AM488_00265 PF00392 Bacterial regulatory proteins, gntR family AM488_00265 PF07840 FadR C-terminal domain AM488_00270 PF06450 AM488_00270 AM488_00275 PF02600 Disulfide bond formation protein DsbB AM488_00280 PF09313 Domain of unknown function (DUF1971) AM488_00285 PF03692 AM488_00285 AM488_00290 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM488_00295 PF05166 YcgL domain AM488_00300 PF03775 Septum formation inhibitor MinC, C-terminal domain AM488_00300 PF05209 Septum formation inhibitor MinC, N-terminal domain AM488_00305 PF13614 AAA domain AM488_00310 PF03776 Septum formation topological specificity factor MinE AM488_00315 PF00570 HRDC domain AM488_00315 PF01612 3'-5' exonuclease AM488_00320 PF00501 AMP-binding enzyme AM488_00320 PF13193 AMP-binding enzyme C-terminal domain AM488_00325 PF03843 AM488_00325 AM488_00330 PF00814 Glycoprotease family AM488_00350 PF07690 Major Facilitator Superfamily AM488_00355 PF01435 Peptidase family M48 AM488_00360 PF00595 PDZ domain (Also known as DHR or GLGF) AM488_00360 PF03572 Peptidase family S41 AM488_00360 PF11818 AM488_00360 AM488_00365 PF04352 ProQ/FINO family AM488_00365 PF17516 AM488_00365 AM488_00370 PF13185 GAF domain AM488_00375 PF04403 AM488_00375 AM488_00380 PF02470 AM488_00380 AM488_00385 PF01189 NOL1/NOP2/sun family AM488_00385 PF13636 pre-rRNA processing and ribosome biogenesis AM488_00385 PF17125 AM488_00385 AM488_00390 PF07351 AM488_00390 AM488_00395 PF07358 AM488_00395 AM488_00400 PF00149 Calcineurin-like phosphoesterase AM488_00405 PF04393 AM488_00405 AM488_00410 PF01609 Transposase DDE domain AM488_00410 PF05598 AM488_00410 AM488_00420 PF10709 AM488_00420 AM488_00425 PF05425 AM488_00425 AM488_00430 PF04234 CopC domain AM488_00435 PF06440 DNA polymerase III, theta subunit AM488_00440 PF00929 Exonuclease AM488_00445 PF00326 Prolyl oligopeptidase family AM488_00445 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AM488_00450 PF04391 AM488_00450 AM488_00455 PF07130 YebG protein AM488_00460 PF02222 ATP-grasp domain AM488_00465 PF01081 KDPG and KHG aldolase AM488_00470 PF00920 Dehydratase family AM488_00475 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AM488_00475 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AM488_00490 PF01380 SIS domain AM488_00490 PF01418 Helix-turn-helix domain, rpiR family AM488_00495 PF00224 Pyruvate kinase, barrel domain AM488_00495 PF02887 Pyruvate kinase, alpha/beta domain AM488_00500 PF03279 AM488_00500 AM488_00505 PF01476 LysM domain AM488_00505 PF01551 Peptidase family M23 AM488_00505 PF08525 AM488_00505 AM488_00510 PF01297 Periplasmic solute binding protein family AM488_00515 PF00005 ABC transporter AM488_00520 PF00950 AM488_00520 AM488_00525 PF05491 Holliday junction DNA helicase ruvB C-terminus AM488_00525 PF05496 Holliday junction DNA helicase ruvB N-terminus AM488_00530 PF01330 RuvA N terminal domain AM488_00530 PF07499 RuvA, C-terminal domain AM488_00530 PF14520 Helix-hairpin-helix domain AM488_00535 PF02075 Crossover junction endodeoxyribonuclease RuvC AM488_00540 PF01709 Transcriptional regulator AM488_00545 PF00293 NUDIX domain AM488_00550 PF00152 tRNA synthetases class II (D, K and N) AM488_00550 PF01336 OB-fold nucleic acid binding domain AM488_00550 PF02938 GAD domain AM488_00555 PF00857 Isochorismatase family AM488_00560 PF01904 Protein of unknown function DUF72 AM488_00565 PF01124 MAPEG family AM488_00570 PF13649 Methyltransferase domain AM488_00575 PF08003 Protein of unknown function (DUF1698) AM488_00580 PF03932 CutC family AM488_00585 PF06185 YecM protein AM488_00590 PF00750 tRNA synthetases class I (R) AM488_00590 PF03485 Arginyl tRNA synthetase N terminal domain AM488_00590 PF05746 DALR anticodon binding domain AM488_00595 PF07470 Glycosyl Hydrolase Family 88 AM488_00600 PF13347 MFS/sugar transport protein AM488_00605 PF00582 Universal stress protein family AM488_00610 PF00982 Glycosyltransferase family 20 AM488_00615 PF02358 Trehalose-phosphatase AM488_00620 PF02653 AM488_00620 AM488_00625 PF00005 ABC transporter AM488_00630 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM488_00640 PF00210 Ferritin-like domain AM488_00650 PF13347 MFS/sugar transport protein AM488_00655 PF10964 AM488_00655 AM488_00660 PF07690 Major Facilitator Superfamily AM488_00665 PF02502 Ribose/Galactose Isomerase AM488_00665 PF12408 Ribose-5-phosphate isomerase AM488_00675 PF00210 Ferritin-like domain AM488_00680 PF10678 AM488_00680 AM488_00685 PF03222 Tryptophan/tyrosine permease family AM488_00690 PF02810 SEC-C motif AM488_00690 PF03695 Uncharacterised protein family (UPF0149) AM488_00695 PF00701 Dihydrodipicolinate synthetase family AM488_00720 PF01066 CDP-alcohol phosphatidyltransferase AM488_00725 PF01541 GIY-YIG catalytic domain AM488_00725 PF02151 UvrB/uvrC motif AM488_00725 PF08459 UvrC Helix-hairpin-helix N-terminal AM488_00725 PF14520 Helix-hairpin-helix domain AM488_00730 PF00072 Response regulator receiver domain AM488_00730 PF00196 Bacterial regulatory proteins, luxR family AM488_00735 PF10769 AM488_00735 AM488_00740 PF00196 Bacterial regulatory proteins, luxR family AM488_00740 PF03472 Autoinducer binding domain AM488_00745 PF00005 ABC transporter AM488_00750 PF00528 Binding-protein-dependent transport system inner membrane component AM488_00755 PF00291 Pyridoxal-phosphate dependent enzyme AM488_00760 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_00765 PF00128 Alpha amylase, catalytic domain AM488_00765 PF02806 Alpha amylase, C-terminal all-beta domain AM488_00770 PF13987 YedD-like protein AM488_00775 PF00196 Bacterial regulatory proteins, luxR family AM488_00780 PF10781 AM488_00780 AM488_00785 PF10733 AM488_00785 AM488_00790 PF00990 GGDEF domain AM488_00790 PF17151 AM488_00790 AM488_00795 PF05661 AM488_00795 AM488_00800 PF00892 EamA-like transporter family AM488_00805 PF03852 DNA mismatch endonuclease Vsr AM488_00810 PF00145 C-5 cytosine-specific DNA methylase AM488_00815 PF01966 HD domain AM488_00830 PF00267 Gram-negative porin AM488_00840 PF06167 Glucose-regulated metallo-peptidase M90 AM488_00860 PF03734 L,D-transpeptidase catalytic domain AM488_00865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_00865 PF03466 LysR substrate binding domain AM488_00870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_00870 PF03466 LysR substrate binding domain AM488_00880 PF00589 Phage integrase family AM488_00880 PF13356 Domain of unknown function (DUF4102) AM488_00890 PF01555 DNA methylase AM488_00895 PF04851 Type III restriction enzyme, res subunit AM488_00905 PF04917 AM488_00905 AM488_00910 PF07963 Prokaryotic N-terminal methylation motif AM488_00910 PF08805 PilS N terminal AM488_00915 PF06412 AM488_00915 AM488_00925 PF01734 Patatin-like phospholipase AM488_00935 PF03389 MobA/MobL family AM488_00940 PF13643 AM488_00940 AM488_00980 PF15948 AM488_00980 AM488_00985 PF00816 H-NS histone family AM488_01010 PF05930 Prophage CP4-57 regulatory protein (AlpA) AM488_01025 PF00999 Sodium/hydrogen exchanger family AM488_01030 PF00440 Bacterial regulatory proteins, tetR family AM488_01030 PF16925 AM488_01030 AM488_01035 PF00107 Zinc-binding dehydrogenase AM488_01040 PF07670 Nucleoside recognition AM488_01045 PF12146 Putative lysophospholipase AM488_01050 PF11183 Polymyxin resistance protein PmrD AM488_01055 PF01048 Phosphorylase superfamily AM488_01055 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AM488_01065 PF01554 MatE AM488_01085 PF00990 GGDEF domain AM488_01085 PF01590 GAF domain AM488_01090 PF00561 alpha/beta hydrolase fold AM488_01100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_01100 PF03466 LysR substrate binding domain AM488_01105 PF08956 Domain of unknown function (DUF1869) AM488_01110 PF09313 Domain of unknown function (DUF1971) AM488_01115 PF00563 EAL domain AM488_01115 PF00990 GGDEF domain AM488_01120 PF00174 Oxidoreductase molybdopterin binding domain AM488_01130 PF00083 Sugar (and other) transporter AM488_01140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_01140 PF03466 LysR substrate binding domain AM488_01145 PF14552 Tautomerase enzyme AM488_01150 PF04982 AM488_01150 AM488_01155 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AM488_01155 PF05221 S-adenosyl-L-homocysteine hydrolase AM488_01160 PF02277 Phosphoribosyltransferase AM488_01165 PF02654 AM488_01165 AM488_01170 PF04363 AM488_01170 AM488_01175 PF04632 AM488_01175 AM488_01180 PF06445 GyrI-like small molecule binding domain AM488_01185 PF00768 D-alanyl-D-alanine carboxypeptidase AM488_01185 PF07943 Penicillin-binding protein 5, C-terminal domain AM488_01190 PF00929 Exonuclease AM488_01190 PF08411 Exonuclease C-terminal AM488_01195 PF00009 Elongation factor Tu GTP binding domain AM488_01195 PF00679 Elongation factor G C-terminus AM488_01195 PF03144 Elongation factor Tu domain 2 AM488_01195 PF03764 Elongation factor G, domain IV AM488_01195 PF14492 Elongation Factor G, domain II AM488_01200 PF12840 Helix-turn-helix domain AM488_01205 PF13520 Amino acid permease AM488_01215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_01215 PF03466 LysR substrate binding domain AM488_01220 PF01370 NAD dependent epimerase/dehydratase family AM488_01225 PF08047 AM488_01225 AM488_01230 PF01634 ATP phosphoribosyltransferase AM488_01230 PF08029 HisG, C-terminal domain AM488_01235 PF00815 Histidinol dehydrogenase AM488_01240 PF00155 Aminotransferase class I and II AM488_01245 PF00475 Imidazoleglycerol-phosphate dehydratase AM488_01245 PF08645 Polynucleotide kinase 3 phosphatase AM488_01250 PF00117 Glutamine amidotransferase class-I AM488_01255 PF00977 Histidine biosynthesis protein AM488_01260 PF00977 Histidine biosynthesis protein AM488_01265 PF01502 Phosphoribosyl-AMP cyclohydrolase AM488_01265 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AM488_01270 PF01527 Transposase AM488_01275 PF05717 AM488_01275 AM488_01280 PF03050 AM488_01280 AM488_01280 PF13005 AM488_01280 AM488_01280 PF13007 AM488_01280 AM488_01280 PF13817 AM488_01280 AM488_01295 PF00534 Glycosyl transferases group 1 AM488_01295 PF13477 Glycosyl transferase 4-like AM488_01300 PF01061 AM488_01300 AM488_01305 PF00005 ABC transporter AM488_01305 PF14524 Wzt C-terminal domain AM488_01325 PF01370 NAD dependent epimerase/dehydratase family AM488_01330 PF13737 AM488_01330 AM488_01350 PF14305 AM488_01350 AM488_01355 PF01943 AM488_01355 AM488_01365 PF02485 Core-2/I-Branching enzyme AM488_01370 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM488_01370 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM488_01370 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM488_01375 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AM488_01375 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM488_01385 PF04457 AM488_01385 AM488_01390 PF04616 Glycosyl hydrolases family 43 AM488_01395 PF13358 DDE superfamily endonuclease AM488_01395 PF13384 Homeodomain-like domain AM488_01400 PF14897 AM488_01400 AM488_01405 PF00535 Glycosyl transferase family 2 AM488_01410 PF00535 Glycosyl transferase family 2 AM488_01415 PF00535 Glycosyl transferase family 2 AM488_01420 PF00534 Glycosyl transferases group 1 AM488_01420 PF13439 Glycosyltransferase Family 4 AM488_01425 PF02397 AM488_01425 AM488_01425 PF13727 CoA-binding domain AM488_01430 PF02706 Chain length determinant protein AM488_01430 PF13614 AAA domain AM488_01430 PF13807 AM488_01430 AM488_01435 PF01451 Low molecular weight phosphotyrosine protein phosphatase AM488_01440 PF02563 Polysaccharide biosynthesis/export protein AM488_01440 PF10531 SLBB domain AM488_01445 PF14052 Capsule assembly protein Wzi AM488_01450 PF01569 PAP2 superfamily AM488_01455 PF00483 Nucleotidyl transferase AM488_01465 PF00571 CBS domain AM488_01465 PF03471 Transporter associated domain AM488_01465 PF03741 AM488_01465 AM488_01470 PF05170 AM488_01470 AM488_01470 PF13502 AM488_01470 AM488_01475 PF00692 dUTPase AM488_01480 PF00485 Phosphoribulokinase / Uridine kinase family AM488_01485 PF00730 HhH-GPD superfamily base excision DNA repair protein AM488_01485 PF06029 AlkA N-terminal domain AM488_01495 PF00012 Hsp70 protein AM488_01500 PF00512 His Kinase A (phospho-acceptor) domain AM488_01500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_01500 PF07696 7TMR-DISM extracellular 2 AM488_01505 PF00072 Response regulator receiver domain AM488_01505 PF00486 Transcriptional regulatory protein, C terminal AM488_01510 PF00196 Bacterial regulatory proteins, luxR family AM488_01515 PF00375 Sodium:dicarboxylate symporter family AM488_01520 PF13437 HlyD family secretion protein AM488_01520 PF13533 Biotin-lipoyl like AM488_01525 PF00873 AcrB/AcrD/AcrF family AM488_01530 PF00873 AcrB/AcrD/AcrF family AM488_01535 PF07690 Major Facilitator Superfamily AM488_01540 PF00512 His Kinase A (phospho-acceptor) domain AM488_01540 PF00672 HAMP domain AM488_01540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_01545 PF00072 Response regulator receiver domain AM488_01545 PF00486 Transcriptional regulatory protein, C terminal AM488_01550 PF01136 AM488_01550 AM488_01550 PF16325 AM488_01550 AM488_01555 PF00781 Diacylglycerol kinase catalytic domain AM488_01560 PF13419 Haloacid dehalogenase-like hydrolase AM488_01565 PF07690 Major Facilitator Superfamily AM488_01570 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM488_01570 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM488_01575 PF01232 Mannitol dehydrogenase Rossmann domain AM488_01575 PF08125 Mannitol dehydrogenase C-terminal domain AM488_01580 PF04198 Putative sugar-binding domain AM488_01585 PF00356 Bacterial regulatory proteins, lacI family AM488_01585 PF13407 Periplasmic binding protein domain AM488_01590 PF00106 short chain dehydrogenase AM488_01595 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM488_01595 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM488_01600 PF07690 Major Facilitator Superfamily AM488_01605 PF01791 DeoC/LacD family aldolase AM488_01610 PF08543 Phosphomethylpyrimidine kinase AM488_01615 PF02110 Hydroxyethylthiazole kinase family AM488_01620 PF00582 Universal stress protein family AM488_01625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_01625 PF03466 LysR substrate binding domain AM488_01630 PF01979 Amidohydrolase family AM488_01630 PF13382 Adenine deaminase C-terminal domain AM488_01635 PF00860 Permease family AM488_01640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_01640 PF03466 LysR substrate binding domain AM488_01645 PF11776 Domain of unknown function (DUF3315) AM488_01650 PF13508 Acetyltransferase (GNAT) domain AM488_01655 PF10609 ParA/MinD ATPase like AM488_01660 PF01588 Putative tRNA binding domain AM488_01660 PF09334 tRNA synthetases class I (M) AM488_01665 PF07308 AM488_01665 AM488_01670 PF00072 Response regulator receiver domain AM488_01670 PF04397 LytTr DNA-binding domain AM488_01675 PF06580 AM488_01675 AM488_01675 PF07694 5TMR of 5TMR-LYT AM488_01675 PF13185 GAF domain AM488_01685 PF00528 Binding-protein-dependent transport system inner membrane component AM488_01690 PF00005 ABC transporter AM488_01690 PF00571 CBS domain AM488_01695 PF00528 Binding-protein-dependent transport system inner membrane component AM488_01700 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM488_01705 PF00933 Glycosyl hydrolase family 3 N terminal domain AM488_01705 PF01915 Glycosyl hydrolase family 3 C-terminal domain AM488_01705 PF14310 Fibronectin type III-like domain AM488_01710 PF01565 FAD binding domain AM488_01710 PF09330 D-lactate dehydrogenase, membrane binding AM488_01715 PF13420 Acetyltransferase (GNAT) domain AM488_01720 PF00768 D-alanyl-D-alanine carboxypeptidase AM488_01725 PF06930 AM488_01725 AM488_01730 PF09335 AM488_01730 AM488_01735 PF02321 Outer membrane efflux protein AM488_01745 PF00232 Glycosyl hydrolase family 1 AM488_01750 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AM488_01750 PF00367 phosphotransferase system, EIIB AM488_01750 PF02378 Phosphotransferase system, EIIC AM488_01755 PF00874 PRD domain AM488_01755 PF03123 CAT RNA binding domain AM488_01760 PF04966 Carbohydrate-selective porin, OprB family AM488_01765 PF01207 Dihydrouridine synthase (Dus) AM488_01770 PF03788 AM488_01770 AM488_01775 PF04172 AM488_01775 AM488_01780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM488_01780 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AM488_01790 PF02698 DUF218 domain AM488_01795 PF02653 AM488_01795 AM488_01800 PF00005 ABC transporter AM488_01805 PF13407 Periplasmic binding protein domain AM488_01810 PF00356 Bacterial regulatory proteins, lacI family AM488_01810 PF13377 Periplasmic binding protein-like domain AM488_01815 PF04235 AM488_01815 AM488_01820 PF01227 GTP cyclohydrolase I AM488_01825 PF00756 Putative esterase AM488_01830 PF00593 TonB dependent receptor AM488_01830 PF07715 TonB-dependent Receptor Plug Domain AM488_01845 PF00324 Amino acid permease AM488_01850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_01850 PF03466 LysR substrate binding domain AM488_01860 PF03601 AM488_01860 AM488_01865 PF01261 Xylose isomerase-like TIM barrel AM488_01870 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_01870 PF02378 Phosphotransferase system, EIIC AM488_01875 PF00294 pfkB family carbohydrate kinase AM488_01880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_01880 PF00381 PTS HPr component phosphorylation site AM488_01890 PF07690 Major Facilitator Superfamily AM488_01895 PF03692 AM488_01895 AM488_01900 PF01132 Elongation factor P (EF-P) OB domain AM488_01900 PF08207 Elongation factor P (EF-P) KOW-like domain AM488_01900 PF09285 Elongation factor P, C-terminal AM488_01905 PF03786 D-mannonate dehydratase (UxuA) AM488_01910 PF01232 Mannitol dehydrogenase Rossmann domain AM488_01910 PF08125 Mannitol dehydrogenase C-terminal domain AM488_01915 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM488_01915 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM488_01920 PF01569 PAP2 superfamily AM488_01925 PF00877 NlpC/P60 family AM488_01930 PF00563 EAL domain AM488_01930 PF12792 AM488_01930 AM488_01935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_01940 PF00528 Binding-protein-dependent transport system inner membrane component AM488_01945 PF00528 Binding-protein-dependent transport system inner membrane component AM488_01945 PF12911 AM488_01945 AM488_01950 PF00005 ABC transporter AM488_01950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM488_01955 PF13989 AM488_01955 AM488_01960 PF07690 Major Facilitator Superfamily AM488_01965 PF00849 RNA pseudouridylate synthase AM488_01965 PF01479 S4 domain AM488_01970 PF00271 Helicase conserved C-terminal domain AM488_01970 PF04851 Type III restriction enzyme, res subunit AM488_01975 PF01386 Ribosomal L25p family AM488_01980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_01980 PF03466 LysR substrate binding domain AM488_01985 PF00144 Beta-lactamase AM488_01995 PF00455 AM488_01995 AM488_01995 PF08220 DeoR-like helix-turn-helix domain AM488_02000 PF04245 AM488_02000 AM488_02005 PF07208 Protein of unknown function (DUF1414) AM488_02010 PF00884 Sulfatase AM488_02010 PF11893 AM488_02010 AM488_02020 PF01594 AM488_02020 AM488_02025 PF03974 Ecotin AM488_02030 PF06039 AM488_02030 AM488_02035 PF00916 AM488_02035 AM488_02040 PF00571 CBS domain AM488_02040 PF01769 Divalent cation transporter AM488_02040 PF03448 MgtE intracellular N domain AM488_02045 PF00005 ABC transporter AM488_02050 PF13532 2OG-Fe(II) oxygenase superfamily AM488_02055 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM488_02055 PF02805 Metal binding domain of Ada AM488_02055 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM488_02055 PF12833 Helix-turn-helix domain AM488_02060 PF02424 ApbE family AM488_02070 PF01627 Hpt domain AM488_02070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_02070 PF16359 AM488_02070 AM488_02075 PF00072 Response regulator receiver domain AM488_02075 PF00196 Bacterial regulatory proteins, luxR family AM488_02080 PF00072 Response regulator receiver domain AM488_02080 PF00512 His Kinase A (phospho-acceptor) domain AM488_02080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_02080 PF09456 RcsC Alpha-Beta-Loop (ABL) AM488_02085 PF00521 DNA gyrase/topoisomerase IV, subunit A AM488_02085 PF03989 DNA gyrase C-terminal domain, beta-propeller AM488_02090 PF13489 Methyltransferase domain AM488_02100 PF00317 Ribonucleotide reductase, all-alpha domain AM488_02100 PF02867 Ribonucleotide reductase, barrel domain AM488_02100 PF03477 ATP cone domain AM488_02105 PF00268 Ribonucleotide reductase, small chain AM488_02110 PF00111 2Fe-2S iron-sulfur cluster binding domain AM488_02120 PF03009 Glycerophosphoryl diester phosphodiesterase family AM488_02125 PF07690 Major Facilitator Superfamily AM488_02130 PF01266 FAD dependent oxidoreductase AM488_02130 PF04324 BFD-like [2Fe-2S] binding domain AM488_02135 PF00890 FAD binding domain AM488_02140 PF02754 AM488_02140 AM488_02140 PF13183 4Fe-4S dicluster domain AM488_02145 PF03328 HpcH/HpaI aldolase/citrate lyase family AM488_02150 PF07690 Major Facilitator Superfamily AM488_02155 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM488_02155 PF13378 Enolase C-terminal domain-like AM488_02160 PF01614 Bacterial transcriptional regulator AM488_02160 PF09339 IclR helix-turn-helix domain AM488_02165 PF00994 Probable molybdopterin binding domain AM488_02170 PF07437 AM488_02170 AM488_02175 PF04754 AM488_02175 AM488_02180 PF00293 NUDIX domain AM488_02185 PF00501 AMP-binding enzyme AM488_02185 PF13193 AMP-binding enzyme C-terminal domain AM488_02190 PF13378 Enolase C-terminal domain-like AM488_02195 PF00378 Enoyl-CoA hydratase/isomerase family AM488_02200 PF12697 Alpha/beta hydrolase family AM488_02205 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM488_02205 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM488_02205 PF16582 AM488_02205 AM488_02210 PF00425 chorismate binding enzyme AM488_02215 PF13673 Acetyltransferase (GNAT) domain AM488_02220 PF12706 Beta-lactamase superfamily domain AM488_02225 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AM488_02230 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AM488_02235 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AM488_02235 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM488_02240 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AM488_02245 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AM488_02250 PF12838 4Fe-4S dicluster domain AM488_02255 PF00146 NADH dehydrogenase AM488_02260 PF00384 Molybdopterin oxidoreductase AM488_02260 PF01568 Molydopterin dinucleotide binding domain AM488_02260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM488_02260 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AM488_02260 PF13510 2Fe-2S iron-sulfur cluster binding domain AM488_02265 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AM488_02265 PF10531 SLBB domain AM488_02265 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AM488_02270 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AM488_02275 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AM488_02275 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AM488_02280 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM488_02285 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AM488_02300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_02300 PF03466 LysR substrate binding domain AM488_02305 PF00155 Aminotransferase class I and II AM488_02310 PF13023 HD domain AM488_02315 PF02080 TrkA-C domain AM488_02315 PF03600 Citrate transporter AM488_02320 PF13419 Haloacid dehalogenase-like hydrolase AM488_02325 PF03887 YfbU domain AM488_02330 PF04217 AM488_02330 AM488_02335 PF00871 Acetokinase family AM488_02340 PF01515 Phosphate acetyl/butaryl transferase AM488_02340 PF07085 DRTGG domain AM488_02340 PF13500 AAA domain AM488_02345 PF00293 NUDIX domain AM488_02350 PF12850 Calcineurin-like phosphoesterase superfamily domain AM488_02355 PF13417 Glutathione S-transferase, N-terminal domain AM488_02355 PF14834 Glutathione S-transferase, C-terminal domain AM488_02360 PF02798 Glutathione S-transferase, N-terminal domain AM488_02360 PF13410 Glutathione S-transferase, C-terminal domain AM488_02365 PF02152 Dihydroneopterin aldolase AM488_02370 PF01370 NAD dependent epimerase/dehydratase family AM488_02370 PF08338 Domain of unknown function (DUF1731) AM488_02375 PF13302 Acetyltransferase (GNAT) domain AM488_02380 PF00005 ABC transporter AM488_02385 PF00528 Binding-protein-dependent transport system inner membrane component AM488_02390 PF00528 Binding-protein-dependent transport system inner membrane component AM488_02395 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_02400 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_02405 PF02441 Flavoprotein AM488_02410 PF00156 Phosphoribosyl transferase domain AM488_02410 PF13522 Glutamine amidotransferase domain AM488_02415 PF02674 AM488_02415 AM488_02420 PF05036 Sporulation related domain AM488_02425 PF02875 Mur ligase family, glutamate ligase domain AM488_02425 PF08245 Mur ligase middle domain AM488_02430 PF01039 Carboxyl transferase domain AM488_02435 PF09335 AM488_02435 AM488_02440 PF01416 tRNA pseudouridine synthase AM488_02445 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM488_02445 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM488_02450 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM488_02450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM488_02450 PF11890 Domain of unknown function (DUF3410) AM488_02460 PF07690 Major Facilitator Superfamily AM488_02465 PF00109 Beta-ketoacyl synthase, N-terminal domain AM488_02465 PF02801 Beta-ketoacyl synthase, C-terminal domain AM488_02470 PF01266 FAD dependent oxidoreductase AM488_02470 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AM488_02475 PF08891 AM488_02475 AM488_02480 PF04315 AM488_02480 AM488_02485 PF01925 AM488_02485 AM488_02490 PF03411 Penicillin-insensitive murein endopeptidase AM488_02495 PF01264 Chorismate synthase AM488_02500 PF05175 Methyltransferase small domain AM488_02505 PF01713 Smr domain AM488_02510 PF00300 Histidine phosphatase superfamily (branch 1) AM488_02515 PF00378 Enoyl-CoA hydratase/isomerase family AM488_02515 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM488_02515 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM488_02520 PF00108 Thiolase, N-terminal domain AM488_02520 PF02803 Thiolase, C-terminal domain AM488_02525 PF04175 Protein of unknown function (DUF406) AM488_02535 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AM488_02540 PF04333 AM488_02540 AM488_02545 PF01226 Formate/nitrite transporter AM488_02565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_02565 PF03466 LysR substrate binding domain AM488_02570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM488_02575 PF07690 Major Facilitator Superfamily AM488_02585 PF00155 Aminotransferase class I and II AM488_02595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_02595 PF06580 AM488_02595 AM488_02595 PF07694 5TMR of 5TMR-LYT AM488_02600 PF00072 Response regulator receiver domain AM488_02600 PF04397 LytTr DNA-binding domain AM488_02605 PF02685 Glucokinase AM488_02610 PF00654 Voltage gated chloride channel AM488_02615 PF00205 Thiamine pyrophosphate enzyme, central domain AM488_02615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM488_02615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM488_02620 PF00248 Aldo/keto reductase family AM488_02625 PF10697 AM488_02625 AM488_02630 PF01566 AM488_02630 AM488_02635 PF01773 Na+ dependent nucleoside transporter N-terminus AM488_02635 PF07662 Na+ dependent nucleoside transporter C-terminus AM488_02635 PF07670 Nucleoside recognition AM488_02640 PF00563 EAL domain AM488_02640 PF00990 GGDEF domain AM488_02640 PF05231 AM488_02640 AM488_02655 PF07037 AM488_02655 AM488_02660 PF07037 AM488_02660 AM488_02665 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM488_02695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_02695 PF03466 LysR substrate binding domain AM488_02700 PF13593 SBF-like CPA transporter family (DUF4137) AM488_02705 PF12843 AM488_02705 AM488_02710 PF00533 BRCA1 C Terminus (BRCT) domain AM488_02710 PF01653 NAD-dependent DNA ligase adenylation domain AM488_02710 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AM488_02710 PF03120 NAD-dependent DNA ligase OB-fold domain AM488_02710 PF12826 Helix-hairpin-helix motif AM488_02710 PF14520 Helix-hairpin-helix domain AM488_02715 PF04354 ZipA, C-terminal FtsZ-binding domain AM488_02720 PF07264 Etoposide-induced protein 2 AM488_02725 PF00291 Pyridoxal-phosphate dependent enzyme AM488_02730 PF00381 PTS HPr component phosphorylation site AM488_02735 PF00391 PEP-utilising enzyme, mobile domain AM488_02735 PF02896 PEP-utilising enzyme, TIM barrel domain AM488_02735 PF05524 PEP-utilising enzyme, N-terminal AM488_02740 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AM488_02750 PF08543 Phosphomethylpyrimidine kinase AM488_02755 PF00155 Aminotransferase class I and II AM488_02755 PF00392 Bacterial regulatory proteins, gntR family AM488_02760 PF14534 Domain of unknown function (DUF4440) AM488_02765 PF00291 Pyridoxal-phosphate dependent enzyme AM488_02770 PF00005 ABC transporter AM488_02770 PF12857 AM488_02770 AM488_02775 PF00528 Binding-protein-dependent transport system inner membrane component AM488_02780 PF00528 Binding-protein-dependent transport system inner membrane component AM488_02785 PF13531 Bacterial extracellular solute-binding protein AM488_02795 PF04261 Dyp-type peroxidase family AM488_02800 PF06572 Protein of unknown function (DUF1131) AM488_02805 PF11143 AM488_02805 AM488_02810 PF00583 Acetyltransferase (GNAT) family AM488_02815 PF01520 N-acetylmuramoyl-L-alanine amidase AM488_02820 PF01218 Coproporphyrinogen III oxidase AM488_02825 PF12833 Helix-turn-helix domain AM488_02830 PF00936 BMC domain AM488_02830 PF16365 AM488_02830 AM488_02835 PF00936 BMC domain AM488_02840 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AM488_02845 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AM488_02850 PF06277 Ethanolamine utilisation protein EutA AM488_02855 PF04346 AM488_02855 AM488_02860 PF00465 Iron-containing alcohol dehydrogenase AM488_02865 PF14450 Cell division protein FtsA AM488_02870 PF00171 Aldehyde dehydrogenase family AM488_02875 PF03319 Ethanolamine utilisation protein EutN/carboxysome AM488_02880 PF00936 BMC domain AM488_02885 PF01515 Phosphate acetyl/butaryl transferase AM488_02890 PF01923 Cobalamin adenosyltransferase AM488_02895 PF06249 Ethanolamine utilisation protein EutQ AM488_02900 PF10662 Ethanolamine utilisation - propanediol utilisation AM488_02905 PF00936 BMC domain AM488_02910 PF00390 Malic enzyme, N-terminal domain AM488_02910 PF01515 Phosphate acetyl/butaryl transferase AM488_02910 PF03949 Malic enzyme, NAD binding domain AM488_02915 PF00923 Transaldolase AM488_02920 PF00456 Transketolase, thiamine diphosphate binding domain AM488_02920 PF02779 Transketolase, pyrimidine binding domain AM488_02920 PF02780 Transketolase, C-terminal domain AM488_02925 PF06674 AM488_02925 AM488_02930 PF00293 NUDIX domain AM488_02935 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_02935 PF13247 4Fe-4S dicluster domain AM488_02935 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AM488_02945 PF00873 AcrB/AcrD/AcrF family AM488_02955 PF03960 ArsC family AM488_02960 PF01546 Peptidase family M20/M25/M40 AM488_02960 PF07687 Peptidase dimerisation domain AM488_02965 PF13980 AM488_02965 AM488_02970 PF02230 Phospholipase/Carboxylesterase AM488_02975 PF05127 Helicase AM488_02975 PF08351 Domain of unknown function (DUF1726) AM488_02975 PF13718 GNAT acetyltransferase 2 AM488_02975 PF17176 AM488_02975 AM488_02980 PF04228 AM488_02980 AM488_02985 PF01259 SAICAR synthetase AM488_02990 PF06804 NlpB/DapX lipoprotein AM488_02995 PF00701 Dihydrodipicolinate synthetase family AM488_03000 PF13740 ACT domain AM488_03005 PF00578 AhpC/TSA family AM488_03010 PF01594 AM488_03010 AM488_03015 PF01435 Peptidase family M48 AM488_03015 PF14559 Tetratricopeptide repeat AM488_03020 PF03960 ArsC family AM488_03025 PF04754 AM488_03025 AM488_03030 PF00308 Bacterial dnaA protein AM488_03035 PF00860 Permease family AM488_03040 PF14681 Uracil phosphoribosyltransferase AM488_03045 PF00232 Glycosyl hydrolase family 1 AM488_03050 PF00480 ROK family AM488_03055 PF00586 AIR synthase related protein, N-terminal domain AM488_03055 PF02769 AIR synthase related protein, C-terminal domain AM488_03060 PF00551 Formyl transferase AM488_03065 PF02503 Polyphosphate kinase middle domain AM488_03065 PF13089 Polyphosphate kinase N-terminal domain AM488_03065 PF13090 Polyphosphate kinase C-terminal domain AM488_03070 PF02541 Ppx/GppA phosphatase family AM488_03075 PF00563 EAL domain AM488_03075 PF05231 AM488_03075 AM488_03080 PF11119 AM488_03080 AM488_03085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_03085 PF03466 LysR substrate binding domain AM488_03090 PF07690 Major Facilitator Superfamily AM488_03095 PF04055 Radical SAM superfamily AM488_03095 PF13186 Iron-sulfur cluster-binding domain AM488_03100 PF00884 Sulfatase AM488_03105 PF00117 Glutamine amidotransferase class-I AM488_03105 PF00958 GMP synthase C terminal domain AM488_03105 PF02540 NAD synthase AM488_03110 PF00478 IMP dehydrogenase / GMP reductase domain AM488_03110 PF00571 CBS domain AM488_03115 PF02601 AM488_03115 AM488_03115 PF13742 AM488_03115 AM488_03120 PF07191 zinc-ribbons AM488_03125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM488_03130 PF01926 50S ribosome-binding GTPase AM488_03130 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AM488_03135 PF13360 PQQ-like domain AM488_03140 PF09976 Tetratricopeptide repeat AM488_03145 PF03129 Anticodon binding domain AM488_03145 PF13393 Histidyl-tRNA synthetase AM488_03150 PF04551 GcpE protein AM488_03155 PF13413 Helix-turn-helix domain AM488_03155 PF13464 AM488_03155 AM488_03160 PF04055 Radical SAM superfamily AM488_03170 PF00334 Nucleoside diphosphate kinase AM488_03175 PF00905 Penicillin binding protein transpeptidase domain AM488_03175 PF00912 Transglycosylase AM488_03175 PF06832 AM488_03175 AM488_03180 PF00207 Alpha-2-macroglobulin family AM488_03180 PF01835 MG2 domain AM488_03180 PF07703 Alpha-2-macroglobulin family N-terminal region AM488_03180 PF11974 Alpha-2-macroglobulin MG1 domain AM488_03185 PF00581 Rhodanese-like domain AM488_03195 PF07179 AM488_03195 AM488_03195 PF14581 AM488_03195 AM488_03200 PF00883 Cytosol aminopeptidase family, catalytic domain AM488_03200 PF12404 AM488_03200 AM488_03205 PF04384 Iron-sulphur cluster assembly AM488_03210 PF00111 2Fe-2S iron-sulfur cluster binding domain AM488_03215 PF00012 Hsp70 protein AM488_03220 PF00226 DnaJ domain AM488_03220 PF07743 HSCB C-terminal oligomerisation domain AM488_03225 PF01521 Iron-sulphur cluster biosynthesis AM488_03230 PF01592 NifU-like N terminal domain AM488_03235 PF00266 Aminotransferase class-V AM488_03240 PF02082 Transcriptional regulator AM488_03245 PF00588 SpoU rRNA Methylase family AM488_03250 PF00459 Inositol monophosphatase family AM488_03260 PF03824 AM488_03260 AM488_03265 PF06226 AM488_03265 AM488_03270 PF00874 PRD domain AM488_03275 PF12832 MFS_1 like family AM488_03280 PF01263 Aldose 1-epimerase AM488_03285 PF00083 Sugar (and other) transporter AM488_03295 PF00480 ROK family AM488_03300 PF07681 AM488_03300 AM488_03305 PF00464 Serine hydroxymethyltransferase AM488_03315 PF00042 Globin AM488_03315 PF00175 Oxidoreductase NAD-binding domain AM488_03315 PF00970 Oxidoreductase FAD-binding domain AM488_03320 PF00543 Nitrogen regulatory protein P-II AM488_03325 PF00072 Response regulator receiver domain AM488_03325 PF00158 Sigma-54 interaction domain AM488_03330 PF13942 AM488_03330 AM488_03335 PF00512 His Kinase A (phospho-acceptor) domain AM488_03335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_03340 PF02769 AIR synthase related protein, C-terminal domain AM488_03340 PF13507 CobB/CobQ-like glutamine amidotransferase domain AM488_03345 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_03345 PF01464 Transglycosylase SLT domain AM488_03350 PF14437 AM488_03350 AM488_03355 PF12710 haloacid dehalogenase-like hydrolase AM488_03360 PF01380 SIS domain AM488_03360 PF01418 Helix-turn-helix domain, rpiR family AM488_03365 PF12838 4Fe-4S dicluster domain AM488_03370 PF01648 4'-phosphopantetheinyl transferase superfamily AM488_03375 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AM488_03380 PF02565 Recombination protein O C terminal AM488_03380 PF11967 Recombination protein O N terminal AM488_03385 PF01926 50S ribosome-binding GTPase AM488_03385 PF07650 KH domain AM488_03390 PF00035 Double-stranded RNA binding motif AM488_03390 PF14622 Ribonuclease-III-like AM488_03395 PF00717 Peptidase S24-like AM488_03395 PF10502 Signal peptidase, peptidase S26 AM488_03400 PF00009 Elongation factor Tu GTP binding domain AM488_03400 PF00679 Elongation factor G C-terminus AM488_03400 PF03144 Elongation factor Tu domain 2 AM488_03400 PF06421 GTP-binding protein LepA C-terminus AM488_03405 PF04246 AM488_03405 AM488_03410 PF03888 MucB/RseB family AM488_03410 PF17188 AM488_03410 AM488_03415 PF03872 Anti sigma-E protein RseA, N-terminal domain AM488_03415 PF03873 Anti sigma-E protein RseA, C-terminal domain AM488_03420 PF04542 Sigma-70 region 2 AM488_03420 PF08281 Sigma-70, region 4 AM488_03425 PF00890 FAD binding domain AM488_03425 PF02910 Fumarate reductase flavoprotein C-term AM488_03430 PF05175 Methyltransferase small domain AM488_03435 PF00270 DEAD/DEAH box helicase AM488_03435 PF00271 Helicase conserved C-terminal domain AM488_03440 PF01228 Glycine radical AM488_03445 PF03167 Uracil DNA glycosylase superfamily AM488_03450 PF00588 SpoU rRNA Methylase family AM488_03450 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM488_03455 PF00085 Thioredoxin AM488_03460 PF03942 AM488_03460 AM488_03465 PF00583 Acetyltransferase (GNAT) family AM488_03465 PF13380 CoA binding domain AM488_03465 PF13549 ATP-grasp domain AM488_03465 PF13607 Succinyl-CoA ligase like flavodoxin domain AM488_03470 PF13091 PLD-like domain AM488_03475 PF10043 AM488_03475 AM488_03480 PF00083 Sugar (and other) transporter AM488_03505 PF00004 ATPase family associated with various cellular activities (AAA) AM488_03505 PF02861 Clp amino terminal domain AM488_03505 PF07724 AAA domain (Cdc48 subfamily) AM488_03505 PF10431 C-terminal, D2-small domain, of ClpB protein AM488_03510 PF02578 Multi-copper polyphenol oxidoreductase laccase AM488_03515 PF00849 RNA pseudouridylate synthase AM488_03515 PF01479 S4 domain AM488_03520 PF13525 Outer membrane lipoprotein AM488_03525 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AM488_03535 PF00800 Prephenate dehydratase AM488_03535 PF01817 Chorismate mutase type II AM488_03540 PF08450 SMP-30/Gluconolaconase/LRE-like region AM488_03545 PF01817 Chorismate mutase type II AM488_03545 PF02153 Prephenate dehydrogenase AM488_03550 PF00793 DAHP synthetase I family AM488_03555 PF13689 AM488_03555 AM488_03560 PF00990 GGDEF domain AM488_03560 PF17152 AM488_03560 AM488_03565 PF00691 OmpA family AM488_03570 PF03929 AM488_03570 AM488_03575 PF11162 AM488_03575 AM488_03580 PF01245 Ribosomal protein L19 AM488_03585 PF01746 tRNA (Guanine-1)-methyltransferase AM488_03590 PF01782 RimM N-terminal domain AM488_03590 PF05239 PRC-barrel domain AM488_03595 PF00886 Ribosomal protein S16 AM488_03600 PF00448 SRP54-type protein, GTPase domain AM488_03600 PF02881 SRP54-type protein, helical bundle domain AM488_03600 PF02978 Signal peptide binding domain AM488_03605 PF01578 AM488_03605 AM488_03610 PF00571 CBS domain AM488_03610 PF01595 AM488_03610 AM488_03610 PF03471 Transporter associated domain AM488_03615 PF01025 GrpE AM488_03625 PF01513 ATP-NAD kinase AM488_03630 PF02463 RecF/RecN/SMC N terminal domain AM488_03635 PF04355 SmpA / OmlA family AM488_03640 PF03658 RnfH family Ubiquitin AM488_03645 PF03364 Polyketide cyclase / dehydrase and lipid transport AM488_03650 PF01668 SmpB protein AM488_03665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_03665 PF03466 LysR substrate binding domain AM488_03670 PF01613 Flavin reductase like domain AM488_03675 PF12833 Helix-turn-helix domain AM488_03680 PF13437 HlyD family secretion protein AM488_03680 PF13533 Biotin-lipoyl like AM488_03685 PF00873 AcrB/AcrD/AcrF family AM488_03690 PF02082 Transcriptional regulator AM488_03695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_03695 PF03466 LysR substrate binding domain AM488_03700 PF00491 Arginase family AM488_03705 PF01261 Xylose isomerase-like TIM barrel AM488_03710 PF03171 2OG-Fe(II) oxygenase superfamily AM488_03710 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AM488_03715 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_03720 PF00005 ABC transporter AM488_03720 PF00528 Binding-protein-dependent transport system inner membrane component AM488_03725 PF00596 Class II Aldolase and Adducin N-terminal domain AM488_03730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM488_03735 PF00106 short chain dehydrogenase AM488_03745 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_03750 PF00196 Bacterial regulatory proteins, luxR family AM488_03755 PF00419 Fimbrial protein AM488_03760 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM488_03760 PF02753 Pili assembly chaperone PapD, C-terminal domain AM488_03765 PF00577 Outer membrane usher protein AM488_03765 PF13953 PapC C-terminal domain AM488_03765 PF13954 PapC N-terminal domain AM488_03770 PF00419 Fimbrial protein AM488_03780 PF00577 Outer membrane usher protein AM488_03780 PF13953 PapC C-terminal domain AM488_03780 PF13954 PapC N-terminal domain AM488_03785 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM488_03785 PF02753 Pili assembly chaperone PapD, C-terminal domain AM488_03790 PF00419 Fimbrial protein AM488_03795 PF00171 Aldehyde dehydrogenase family AM488_03800 PF00158 Sigma-54 interaction domain AM488_03800 PF01590 GAF domain AM488_03800 PF02954 Bacterial regulatory protein, Fis family AM488_03805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_03805 PF03466 LysR substrate binding domain AM488_03810 PF02525 Flavodoxin-like fold AM488_03815 PF01022 Bacterial regulatory protein, arsR family AM488_03820 PF00581 Rhodanese-like domain AM488_03820 PF11127 Protein of unknown function (DUF2892) AM488_03825 PF05118 Aspartyl/Asparaginyl beta-hydroxylase AM488_03835 PF00816 H-NS histone family AM488_03850 PF06610 AM488_03850 AM488_03855 PF09400 Protein of unknown function (DUF2002) AM488_03860 PF05957 AM488_03860 AM488_03865 PF00155 Aminotransferase class I and II AM488_03865 PF00392 Bacterial regulatory proteins, gntR family AM488_03870 PF02627 Carboxymuconolactone decarboxylase family AM488_03875 PF00462 Glutaredoxin AM488_03880 PF07972 NrdI Flavodoxin like AM488_03885 PF00317 Ribonucleotide reductase, all-alpha domain AM488_03885 PF02867 Ribonucleotide reductase, barrel domain AM488_03885 PF08343 Ribonucleotide reductase N-terminal AM488_03890 PF00268 Ribonucleotide reductase, small chain AM488_03895 PF00005 ABC transporter AM488_03895 PF00571 CBS domain AM488_03900 PF00528 Binding-protein-dependent transport system inner membrane component AM488_03905 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM488_03910 PF03591 AM488_03910 AM488_03915 PF05437 AM488_03915 AM488_03920 PF01047 MarR family AM488_03925 PF00529 HlyD family secretion protein AM488_03925 PF16576 AM488_03925 AM488_03930 PF07690 Major Facilitator Superfamily AM488_03935 PF00682 HMGL-like AM488_03935 PF08502 LeuA allosteric (dimerisation) domain AM488_03940 PF02311 AraC-like ligand binding domain AM488_03940 PF12833 Helix-turn-helix domain AM488_03945 PF02664 S-Ribosylhomocysteinase (LuxS) AM488_03950 PF04262 Glutamate-cysteine ligase AM488_03955 PF09335 AM488_03955 AM488_03960 PF13419 Haloacid dehalogenase-like hydrolase AM488_03965 PF04972 BON domain AM488_03995 PF02599 Global regulator protein family AM488_04000 PF01411 tRNA synthetases class II (A) AM488_04000 PF02272 DHHA1 domain AM488_04000 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM488_04005 PF02631 RecX family AM488_04010 PF00154 recA bacterial DNA recombination protein AM488_04015 PF02464 Competence-damaged protein AM488_04020 PF01297 Periplasmic solute binding protein family AM488_04025 PF00950 AM488_04025 AM488_04030 PF00005 ABC transporter AM488_04040 PF13406 Transglycosylase SLT domain AM488_04045 PF03608 AM488_04045 AM488_04050 PF03612 AM488_04050 AM488_04050 PF07663 AM488_04050 AM488_04055 PF03829 PTS system glucitol/sorbitol-specific IIA component AM488_04060 PF00106 short chain dehydrogenase AM488_04065 PF06923 AM488_04065 AM488_04070 PF00455 AM488_04070 AM488_04070 PF08220 DeoR-like helix-turn-helix domain AM488_04075 PF00571 CBS domain AM488_04075 PF01380 SIS domain AM488_04080 PF00158 Sigma-54 interaction domain AM488_04080 PF01590 GAF domain AM488_04090 PF00258 Flavodoxin AM488_04090 PF00301 Rubredoxin AM488_04090 PF00753 Metallo-beta-lactamase superfamily AM488_04095 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_04100 PF03824 AM488_04100 AM488_04105 PF00708 Acylphosphatase AM488_04105 PF01300 Telomere recombination AM488_04105 PF07503 HypF finger AM488_04110 PF12798 4Fe-4S binding domain AM488_04110 PF13247 4Fe-4S dicluster domain AM488_04115 PF00356 Bacterial regulatory proteins, lacI family AM488_04115 PF13377 Periplasmic binding protein-like domain AM488_04120 PF00367 phosphotransferase system, EIIB AM488_04120 PF02378 Phosphotransferase system, EIIC AM488_04125 PF00232 Glycosyl hydrolase family 1 AM488_04130 PF08845 AM488_04130 AM488_04135 PF01750 Hydrogenase maturation protease AM488_04140 PF07450 AM488_04140 AM488_04145 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM488_04150 PF12838 4Fe-4S dicluster domain AM488_04155 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AM488_04155 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AM488_04155 PF00374 Nickel-dependent hydrogenase AM488_04160 PF00146 NADH dehydrogenase AM488_04165 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AM488_04170 PF13247 4Fe-4S dicluster domain AM488_04180 PF11046 AM488_04180 AM488_04185 PF01155 Hydrogenase expression/synthesis hypA family AM488_04190 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM488_04195 PF01455 HupF/HypC family AM488_04200 PF01924 Hydrogenase formation hypA family AM488_04205 PF00586 AIR synthase related protein, N-terminal domain AM488_04205 PF02769 AIR synthase related protein, C-terminal domain AM488_04210 PF00158 Sigma-54 interaction domain AM488_04210 PF01590 GAF domain AM488_04210 PF02954 Bacterial regulatory protein, Fis family AM488_04215 PF00232 Glycosyl hydrolase family 1 AM488_04220 PF16990 AM488_04220 AM488_04225 PF02264 LamB porin AM488_04235 PF02378 Phosphotransferase system, EIIC AM488_04240 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_04245 PF02378 Phosphotransferase system, EIIC AM488_04250 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AM488_04255 PF00480 ROK family AM488_04260 PF00356 Bacterial regulatory proteins, lacI family AM488_04260 PF13377 Periplasmic binding protein-like domain AM488_04265 PF01297 Periplasmic solute binding protein family AM488_04270 PF00005 ABC transporter AM488_04275 PF00950 AM488_04275 AM488_04280 PF00950 AM488_04280 AM488_04285 PF11756 AM488_04285 AM488_04290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_04290 PF03466 LysR substrate binding domain AM488_04295 PF03547 AM488_04295 AM488_04300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM488_04300 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM488_04305 PF10262 Rdx family AM488_04310 PF00593 TonB dependent receptor AM488_04310 PF07715 TonB-dependent Receptor Plug Domain AM488_04315 PF05171 Haemin-degrading HemS AM488_04320 PF01497 Periplasmic binding protein AM488_04325 PF01032 FecCD transport family AM488_04330 PF00005 ABC transporter AM488_04335 PF05638 Protein of unknown function (DUF796) AM488_04345 PF07377 Protein of unknown function (DUF1493) AM488_04350 PF00488 MutS domain V AM488_04350 PF01624 MutS domain I AM488_04350 PF05188 MutS domain II AM488_04350 PF05190 MutS family domain IV AM488_04350 PF05192 MutS domain III AM488_04355 PF01848 AM488_04355 AM488_04370 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AM488_04375 PF02441 Flavoprotein AM488_04380 PF01047 MarR family AM488_04385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_04385 PF03466 LysR substrate binding domain AM488_04390 PF07690 Major Facilitator Superfamily AM488_04400 PF00140 Sigma-70 factor, region 1 AM488_04400 PF04539 Sigma-70 region 3 AM488_04400 PF04542 Sigma-70 region 2 AM488_04400 PF04545 Sigma-70, region 4 AM488_04405 PF01476 LysM domain AM488_04405 PF01551 Peptidase family M23 AM488_04410 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AM488_04415 PF01975 Survival protein SurE AM488_04420 PF01142 tRNA pseudouridine synthase D (TruD) AM488_04425 PF02542 YgbB family AM488_04430 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AM488_04435 PF04977 Septum formation initiator AM488_04440 PF12084 AM488_04440 AM488_04445 PF01583 Adenylylsulphate kinase AM488_04450 PF00009 Elongation factor Tu GTP binding domain AM488_04455 PF01507 Phosphoadenosine phosphosulfate reductase family AM488_04460 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM488_04460 PF10414 Sirohaem synthase dimerisation region AM488_04460 PF13241 Putative NAD(P)-binding AM488_04460 PF14824 Sirohaem biosynthesis protein central AM488_04465 PF04389 Peptidase family M28 AM488_04470 PF01507 Phosphoadenosine phosphosulfate reductase family AM488_04475 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM488_04475 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM488_04480 PF00175 Oxidoreductase NAD-binding domain AM488_04480 PF00258 Flavodoxin AM488_04480 PF00667 FAD binding domain AM488_04485 PF01242 6-pyruvoyl tetrahydropterin synthase AM488_04490 PF04055 Radical SAM superfamily AM488_04490 PF13394 4Fe-4S single cluster domain AM488_04495 PF07993 Male sterility protein AM488_04500 PF00113 Enolase, C-terminal TIM barrel domain AM488_04500 PF03952 Enolase, N-terminal domain AM488_04505 PF00117 Glutamine amidotransferase class-I AM488_04505 PF06418 CTP synthase N-terminus AM488_04510 PF03819 MazG nucleotide pyrophosphohydrolase domain AM488_04515 PF02824 TGS domain AM488_04515 PF04607 Region found in RelA / SpoT proteins AM488_04515 PF13291 ACT domain AM488_04515 PF13328 HD domain AM488_04520 PF01938 TRAM domain AM488_04520 PF05958 tRNA (Uracil-5-)-methyltransferase AM488_04525 PF00072 Response regulator receiver domain AM488_04525 PF00512 His Kinase A (phospho-acceptor) domain AM488_04525 PF01627 Hpt domain AM488_04525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_04525 PF09984 AM488_04525 AM488_04535 PF02595 Glycerate kinase family AM488_04540 PF13378 Enolase C-terminal domain-like AM488_04545 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM488_04545 PF13378 Enolase C-terminal domain-like AM488_04550 PF07690 Major Facilitator Superfamily AM488_04555 PF00258 Flavodoxin AM488_04560 PF00849 RNA pseudouridylate synthase AM488_04565 PF04287 tRNA pseudouridine synthase C AM488_04570 PF07348 Syd protein (SUKH-2) AM488_04575 PF14489 QueF-like protein AM488_04575 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AM488_04580 PF03641 Possible lysine decarboxylase AM488_04580 PF11892 Domain of unknown function (DUF3412) AM488_04580 PF14793 Domain of unknown function (DUF4478) AM488_04590 PF03313 AM488_04590 AM488_04590 PF03315 Serine dehydratase beta chain AM488_04595 PF13379 NMT1-like family AM488_04600 PF02770 Acyl-CoA dehydrogenase, middle domain AM488_04600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM488_04600 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM488_04605 PF00083 Sugar (and other) transporter AM488_04615 PF03180 NLPA lipoprotein AM488_04620 PF00528 Binding-protein-dependent transport system inner membrane component AM488_04625 PF00005 ABC transporter AM488_04630 PF00296 Luciferase-like monooxygenase AM488_04635 PF13454 FAD-NAD(P)-binding AM488_04640 PF00296 Luciferase-like monooxygenase AM488_04645 PF00158 Sigma-54 interaction domain AM488_04645 PF02954 Bacterial regulatory protein, Fis family AM488_04645 PF09084 NMT1/THI5 like AM488_04650 PF01367 5'-3' exonuclease, C-terminal SAM fold AM488_04650 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AM488_04655 PF00465 Iron-containing alcohol dehydrogenase AM488_04660 PF00596 Class II Aldolase and Adducin N-terminal domain AM488_04665 PF07690 Major Facilitator Superfamily AM488_04670 PF02952 L-fucose isomerase, C-terminal domain AM488_04670 PF07881 L-fucose isomerase, first N-terminal domain AM488_04670 PF07882 L-fucose isomerase, second N-terminal domain AM488_04675 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM488_04675 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM488_04680 PF05025 RbsD / FucU transport protein family AM488_04685 PF00455 AM488_04685 AM488_04685 PF08220 DeoR-like helix-turn-helix domain AM488_04690 PF01728 FtsJ-like methyltransferase AM488_04695 PF04241 AM488_04695 AM488_04700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_04700 PF03466 LysR substrate binding domain AM488_04705 PF06004 Bacterial protein of unknown function (DUF903) AM488_04710 PF00266 Aminotransferase class-V AM488_04715 PF02657 Fe-S metabolism associated domain AM488_04720 PF00899 ThiF family AM488_04725 PF03562 MltA specific insert domain AM488_04725 PF06725 3D domain AM488_04750 PF02277 Phosphoribosyltransferase AM488_04755 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AM488_04760 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AM488_04760 PF07685 CobB/CobQ-like glutamine amidotransferase domain AM488_04765 PF00005 ABC transporter AM488_04770 PF02361 Cobalt transport protein AM488_04775 PF02553 AM488_04775 AM488_04780 PF01891 Cobalt uptake substrate-specific transmembrane region AM488_04785 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM488_04790 PF06180 Cobalt chelatase (CbiK) AM488_04795 PF02571 AM488_04795 AM488_04800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM488_04805 PF01890 Cobalamin synthesis G C-terminus AM488_04805 PF11760 Cobalamin synthesis G N-terminal AM488_04805 PF11761 AM488_04805 AM488_04810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM488_04815 PF05175 Methyltransferase small domain AM488_04820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM488_04825 PF01888 CbiD AM488_04830 PF02570 Precorrin-8X methylmutase AM488_04835 PF03186 AM488_04835 AM488_04840 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AM488_04840 PF07685 CobB/CobQ-like glutamine amidotransferase domain AM488_04845 PF10114 AM488_04845 AM488_04845 PF12833 Helix-turn-helix domain AM488_04850 PF00230 Major intrinsic protein AM488_04855 PF00936 BMC domain AM488_04860 PF00936 BMC domain AM488_04865 PF02286 Dehydratase large subunit AM488_04870 PF02288 Dehydratase medium subunit AM488_04875 PF02287 Dehydratase small subunit AM488_04880 PF08841 Diol dehydratase reactivase ATPase-like domain AM488_04885 PF02288 Dehydratase medium subunit AM488_04890 PF00936 BMC domain AM488_04895 PF00936 BMC domain AM488_04900 PF06130 AM488_04900 AM488_04905 PF15953 AM488_04905 AM488_04910 PF03319 Ethanolamine utilisation protein EutN/carboxysome AM488_04915 PF01923 Cobalamin adenosyltransferase AM488_04915 PF03928 Domain of unknown function (DUF336) AM488_04920 PF00171 Aldehyde dehydrogenase family AM488_04925 PF00465 Iron-containing alcohol dehydrogenase AM488_04930 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AM488_04930 PF10531 SLBB domain AM488_04930 PF13375 RnfC Barrel sandwich hybrid domain AM488_04930 PF13534 4Fe-4S dicluster domain AM488_04935 PF00936 BMC domain AM488_04940 PF00936 BMC domain AM488_04945 PF10662 Ethanolamine utilisation - propanediol utilisation AM488_04950 PF00871 Acetokinase family AM488_04955 PF00288 GHMP kinases N terminal domain AM488_04960 PF00155 Aminotransferase class I and II AM488_04965 PF01520 N-acetylmuramoyl-L-alanine amidase AM488_04965 PF11741 AMIN domain AM488_04970 PF00583 Acetyltransferase (GNAT) family AM488_04970 PF00696 Amino acid kinase family AM488_04980 PF13538 UvrD-like helicase C-terminal domain AM488_04980 PF13604 AAA domain AM488_04985 PF00580 UvrD/REP helicase N-terminal domain AM488_04985 PF12705 PD-(D/E)XK nuclease superfamily AM488_04985 PF13361 UvrD-like helicase C-terminal domain AM488_04990 PF00675 Insulinase (Peptidase family M16) AM488_04990 PF05193 Peptidase M16 inactive domain AM488_04990 PF16187 AM488_04990 AM488_04995 PF04257 Exodeoxyribonuclease V, gamma subunit AM488_05000 PF12528 AM488_05000 AM488_05005 PF10713 AM488_05005 AM488_05010 PF07963 Prokaryotic N-terminal methylation motif AM488_05015 PF07963 Prokaryotic N-terminal methylation motif AM488_05020 PF00303 Thymidylate synthase AM488_05025 PF01790 AM488_05025 AM488_05030 PF00391 PEP-utilising enzyme, mobile domain AM488_05030 PF01590 GAF domain AM488_05030 PF02896 PEP-utilising enzyme, TIM barrel domain AM488_05030 PF05524 PEP-utilising enzyme, N-terminal AM488_05035 PF00293 NUDIX domain AM488_05040 PF02976 DNA mismatch repair enzyme MutH AM488_05045 PF03741 AM488_05045 AM488_05050 PF06004 Bacterial protein of unknown function (DUF903) AM488_05055 PF00248 Aldo/keto reductase family AM488_05060 PF07690 Major Facilitator Superfamily AM488_05065 PF00501 AMP-binding enzyme AM488_05065 PF01553 Acyltransferase AM488_05080 PF00356 Bacterial regulatory proteins, lacI family AM488_05080 PF13377 Periplasmic binding protein-like domain AM488_05085 PF00583 Acetyltransferase (GNAT) family AM488_05090 PF00392 Bacterial regulatory proteins, gntR family AM488_05090 PF07729 FCD domain AM488_05095 PF00232 Glycosyl hydrolase family 1 AM488_05100 PF02378 Phosphotransferase system, EIIC AM488_05105 PF00356 Bacterial regulatory proteins, lacI family AM488_05105 PF13377 Periplasmic binding protein-like domain AM488_05110 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AM488_05110 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AM488_05115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_05115 PF03466 LysR substrate binding domain AM488_05120 PF01177 Asp/Glu/Hydantoin racemase AM488_05125 PF07883 Cupin domain AM488_05130 PF00528 Binding-protein-dependent transport system inner membrane component AM488_05135 PF00528 Binding-protein-dependent transport system inner membrane component AM488_05140 PF00005 ABC transporter AM488_05140 PF08402 TOBE domain AM488_05145 PF01547 Bacterial extracellular solute-binding protein AM488_05150 PF11471 AM488_05150 AM488_05150 PF16966 AM488_05150 AM488_05155 PF00251 Glycosyl hydrolases family 32 N-terminal domain AM488_05155 PF08244 Glycosyl hydrolases family 32 C terminal AM488_05160 PF01306 LacY proton/sugar symporter AM488_05165 PF00356 Bacterial regulatory proteins, lacI family AM488_05165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM488_05170 PF00083 Sugar (and other) transporter AM488_05175 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_05180 PF14583 Oligogalacturonate lyase AM488_05185 PF06178 Oligogalacturonate-specific porin protein (KdgM) AM488_05190 PF00108 Thiolase, N-terminal domain AM488_05190 PF02803 Thiolase, C-terminal domain AM488_05195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_05195 PF03466 LysR substrate binding domain AM488_05200 PF05232 AM488_05200 AM488_05210 PF00248 Aldo/keto reductase family AM488_05220 PF00196 Bacterial regulatory proteins, luxR family AM488_05225 PF00563 EAL domain AM488_05235 PF00419 Fimbrial protein AM488_05240 PF00577 Outer membrane usher protein AM488_05240 PF13953 PapC C-terminal domain AM488_05240 PF13954 PapC N-terminal domain AM488_05245 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM488_05245 PF02753 Pili assembly chaperone PapD, C-terminal domain AM488_05255 PF07338 Protein of unknown function (DUF1471) AM488_05260 PF00892 EamA-like transporter family AM488_05265 PF01047 MarR family AM488_05270 PF03824 AM488_05270 AM488_05280 PF00589 Phage integrase family AM488_05285 PF00589 Phage integrase family AM488_05290 PF00419 Fimbrial protein AM488_05295 PF00419 Fimbrial protein AM488_05300 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM488_05300 PF02753 Pili assembly chaperone PapD, C-terminal domain AM488_05305 PF00577 Outer membrane usher protein AM488_05305 PF13953 PapC C-terminal domain AM488_05305 PF13954 PapC N-terminal domain AM488_05310 PF00419 Fimbrial protein AM488_05320 PF00419 Fimbrial protein AM488_05320 PF09160 FimH, mannose binding AM488_05325 PF00563 EAL domain AM488_05330 PF14542 GCN5-related N-acetyl-transferase AM488_05335 PF06902 Divergent 4Fe-4S mono-cluster AM488_05340 PF17090 AM488_05340 AM488_05345 PF13437 HlyD family secretion protein AM488_05345 PF13533 Biotin-lipoyl like AM488_05350 PF04632 AM488_05350 AM488_05355 PF02321 Outer membrane efflux protein AM488_05360 PF08986 Domain of unknown function (DUF1889) AM488_05365 PF00854 POT family AM488_05370 PF03960 ArsC family AM488_05375 PF02040 AM488_05375 AM488_05380 PF01022 Bacterial regulatory protein, arsR family AM488_05385 PF03795 YCII-related domain AM488_05390 PF07081 Protein of unknown function (DUF1349) AM488_05395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_05395 PF03466 LysR substrate binding domain AM488_05405 PF02525 Flavodoxin-like fold AM488_05410 PF00248 Aldo/keto reductase family AM488_05415 PF02627 Carboxymuconolactone decarboxylase family AM488_05420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_05420 PF03466 LysR substrate binding domain AM488_05425 PF07690 Major Facilitator Superfamily AM488_05435 PF01476 LysM domain AM488_05435 PF01551 Peptidase family M23 AM488_05445 PF00293 NUDIX domain AM488_05450 PF00152 tRNA synthetases class II (D, K and N) AM488_05450 PF01336 OB-fold nucleic acid binding domain AM488_05460 PF01368 DHH family AM488_05460 PF02272 DHHA1 domain AM488_05465 PF10411 Disulfide bond isomerase protein N-terminus AM488_05465 PF13098 Thioredoxin-like domain AM488_05470 PF00589 Phage integrase family AM488_05470 PF02899 Phage integrase, N-terminal SAM-like domain AM488_05475 PF00258 Flavodoxin AM488_05480 PF07254 AM488_05480 AM488_05485 PF03937 Flavinator of succinate dehydrogenase AM488_05490 PF01571 Aminomethyltransferase folate-binding domain AM488_05495 PF03006 AM488_05495 AM488_05500 PF04266 ASCH domain AM488_05505 PF01380 SIS domain AM488_05505 PF01418 Helix-turn-helix domain, rpiR family AM488_05510 PF00232 Glycosyl hydrolase family 1 AM488_05520 PF02683 AM488_05520 AM488_05520 PF11412 Disulphide bond corrector protein DsbC AM488_05520 PF13899 Thioredoxin-like AM488_05525 PF13462 Thioredoxin AM488_05530 PF00578 AhpC/TSA family AM488_05535 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_05540 PF02347 Glycine cleavage system P-protein AM488_05545 PF01597 Glycine cleavage H-protein AM488_05550 PF01571 Aminomethyltransferase folate-binding domain AM488_05550 PF08669 Glycine cleavage T-protein C-terminal barrel domain AM488_05555 PF01494 FAD binding domain AM488_05560 PF01494 FAD binding domain AM488_05565 PF00557 Metallopeptidase family M24 AM488_05565 PF05195 Aminopeptidase P, N-terminal domain AM488_05570 PF03695 Uncharacterised protein family (UPF0149) AM488_05575 PF05164 Cell division protein ZapA AM488_05585 PF01812 5-formyltetrahydrofolate cyclo-ligase family AM488_05590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM488_05590 PF01842 ACT domain AM488_05590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM488_05595 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AM488_05600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_05600 PF03466 LysR substrate binding domain AM488_05605 PF04402 Protein of unknown function (DUF541) AM488_05610 PF01810 AM488_05610 AM488_05615 PF00924 Mechanosensitive ion channel AM488_05615 PF05552 Conserved TM helix AM488_05620 PF01116 Fructose-bisphosphate aldolase class-II AM488_05625 PF00162 Phosphoglycerate kinase AM488_05630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM488_05630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM488_05635 PF00456 Transketolase, thiamine diphosphate binding domain AM488_05635 PF02779 Transketolase, pyrimidine binding domain AM488_05635 PF02780 Transketolase, C-terminal domain AM488_05640 PF01435 Peptidase family M48 AM488_05645 PF03573 outer membrane porin, OprD family AM488_05650 PF00205 Thiamine pyrophosphate enzyme, central domain AM488_05650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM488_05650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM488_05655 PF00171 Aldehyde dehydrogenase family AM488_05660 PF01958 Domain of unknown function DUF108 AM488_05660 PF03447 Homoserine dehydrogenase, NAD binding domain AM488_05665 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_05670 PF00561 alpha/beta hydrolase fold AM488_05675 PF07883 Cupin domain AM488_05680 PF07690 Major Facilitator Superfamily AM488_05685 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_05685 PF14759 Reductase C-terminal AM488_05690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_05695 PF01614 Bacterial transcriptional regulator AM488_05695 PF09339 IclR helix-turn-helix domain AM488_05700 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_05705 PF00355 Rieske [2Fe-2S] domain AM488_05715 PF00355 Rieske [2Fe-2S] domain AM488_05725 PF07690 Major Facilitator Superfamily AM488_05730 PF00491 Arginase family AM488_05735 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AM488_05740 PF11036 AM488_05740 AM488_05745 PF10885 AM488_05745 AM488_05750 PF00438 S-adenosylmethionine synthetase, N-terminal domain AM488_05750 PF02772 S-adenosylmethionine synthetase, central domain AM488_05750 PF02773 S-adenosylmethionine synthetase, C-terminal domain AM488_05755 PF00083 Sugar (and other) transporter AM488_05760 PF10263 AM488_05760 AM488_05760 PF17283 AM488_05760 AM488_05765 PF04231 Endonuclease I AM488_05770 PF04452 RNA methyltransferase AM488_05775 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AM488_05775 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AM488_05780 PF02622 Uncharacterized ACR, COG1678 AM488_05785 PF03652 Uncharacterised protein family (UPF0081) AM488_05790 PF00196 Bacterial regulatory proteins, luxR family AM488_05795 PF00437 Type II/IV secretion system protein AM488_05800 PF01168 Alanine racemase, N-terminal domain AM488_05805 PF02325 AM488_05805 AM488_05810 PF02594 Uncharacterised ACR, YggU family COG1872 AM488_05815 PF01725 Ham1 family AM488_05820 PF04055 Radical SAM superfamily AM488_05820 PF06969 HemN C-terminal domain AM488_05825 PF11101 AM488_05825 AM488_05830 PF04320 AM488_05830 AM488_05835 PF02390 Putative methyltransferase AM488_05840 PF00633 Helix-hairpin-helix motif AM488_05840 PF00730 HhH-GPD superfamily base excision DNA repair protein AM488_05840 PF10576 Iron-sulfur binding domain of endonuclease III AM488_05840 PF14815 NUDIX domain AM488_05845 PF04362 Bacterial Fe(2+) trafficking AM488_05850 PF01464 Transglycosylase SLT domain AM488_05850 PF11873 Domain of unknown function (DUF3393) AM488_05855 PF03825 AM488_05855 AM488_05860 PF01276 Orn/Lys/Arg decarboxylase, major domain AM488_05860 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AM488_05860 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AM488_05870 PF04474 AM488_05870 AM488_05880 PF00589 Phage integrase family AM488_05880 PF02899 Phage integrase, N-terminal SAM-like domain AM488_05885 PF07514 Putative helicase AM488_05885 PF07515 Protein of unknown function (DUF1528) AM488_05890 PF08401 AM488_05890 AM488_05895 PF11284 AM488_05895 AM488_05905 PF03230 Antirestriction protein AM488_05920 PF12834 AM488_05920 AM488_05920 PF12835 Integrase AM488_05935 PF01381 Helix-turn-helix AM488_05940 PF13693 Winged helix-turn-helix DNA-binding AM488_05945 PF00313 'Cold-shock' DNA-binding domain AM488_05950 PF12844 Helix-turn-helix domain AM488_05955 PF13693 Winged helix-turn-helix DNA-binding AM488_05965 PF07916 AM488_05965 AM488_05980 PF06834 AM488_05980 AM488_05985 PF07511 AM488_05985 AM488_06000 PF08845 AM488_06000 AM488_06000 PF10554 AM488_06000 AM488_06015 PF04471 Restriction endonuclease AM488_06040 PF11920 AM488_06040 AM488_06045 PF11444 AM488_06045 AM488_06050 PF11990 AM488_06050 AM488_06055 PF11190 AM488_06055 AM488_06060 PF11660 AM488_06060 AM488_06065 PF09686 AM488_06065 AM488_06080 PF14348 AM488_06080 AM488_06090 PF10412 Type IV secretion-system coupling protein DNA-binding domain AM488_06090 PF12696 TraM recognition site of TraD and TraG AM488_06095 PF11072 AM488_06095 AM488_06100 PF01464 Transglycosylase SLT domain AM488_06120 PF12101 AM488_06120 AM488_06125 PF08900 AM488_06125 AM488_06130 PF09952 AM488_06130 AM488_06135 PF08843 Nucleotidyl transferase of unknown function (DUF1814) AM488_06140 PF10083 AM488_06140 AM488_06145 PF14903 AM488_06145 AM488_06155 PF13730 AM488_06155 AM488_06160 PF11198 AM488_06160 AM488_06190 PF13614 AAA domain AM488_06210 PF13508 Acetyltransferase (GNAT) domain AM488_06215 PF08681 Protein of unknown function (DUF1778) AM488_06220 PF00291 Pyridoxal-phosphate dependent enzyme AM488_06220 PF00571 CBS domain AM488_06225 PF01053 Cys/Met metabolism PLP-dependent enzyme AM488_06230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_06230 PF03466 LysR substrate binding domain AM488_06235 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_06250 PF00155 Aminotransferase class I and II AM488_06255 PF03738 Glutathionylspermidine synthase preATP-grasp AM488_06255 PF05257 CHAP domain AM488_06260 PF13462 Thioredoxin AM488_06265 PF02798 Glutathione S-transferase, N-terminal domain AM488_06265 PF13410 Glutathione S-transferase, C-terminal domain AM488_06270 PF11115 AM488_06270 AM488_06275 PF01738 Dienelactone hydrolase family AM488_06280 PF03350 AM488_06280 AM488_06285 PF04616 Glycosyl hydrolases family 43 AM488_06290 PF13347 MFS/sugar transport protein AM488_06295 PF02472 Biopolymer transport protein ExbD/TolR AM488_06300 PF01618 AM488_06300 AM488_06310 PF01053 Cys/Met metabolism PLP-dependent enzyme AM488_06315 PF09335 AM488_06315 AM488_06320 PF06719 AM488_06320 AM488_06320 PF12833 Helix-turn-helix domain AM488_06325 PF00465 Iron-containing alcohol dehydrogenase AM488_06330 PF00248 Aldo/keto reductase family AM488_06335 PF00583 Acetyltransferase (GNAT) family AM488_06340 PF04055 Radical SAM superfamily AM488_06340 PF08497 AM488_06340 AM488_06340 PF11842 AM488_06340 AM488_06345 PF07731 Multicopper oxidase AM488_06345 PF07732 Multicopper oxidase AM488_06350 PF01553 Acyltransferase AM488_06355 PF00521 DNA gyrase/topoisomerase IV, subunit A AM488_06355 PF03989 DNA gyrase C-terminal domain, beta-propeller AM488_06360 PF06445 GyrI-like small molecule binding domain AM488_06360 PF12833 Helix-turn-helix domain AM488_06365 PF04076 Bacterial OB fold (BOF) protein AM488_06370 PF00072 Response regulator receiver domain AM488_06370 PF00486 Transcriptional regulatory protein, C terminal AM488_06375 PF00512 His Kinase A (phospho-acceptor) domain AM488_06375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_06380 PF02525 Flavodoxin-like fold AM488_06385 PF03992 Antibiotic biosynthesis monooxygenase AM488_06390 PF00204 DNA gyrase B AM488_06390 PF00986 DNA gyrase B subunit, carboxyl terminus AM488_06390 PF01751 Toprim domain AM488_06390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_06395 PF05728 Uncharacterised protein family (UPF0227) AM488_06400 PF00149 Calcineurin-like phosphoesterase AM488_06405 PF06853 AM488_06405 AM488_06410 PF00293 NUDIX domain AM488_06415 PF02321 Outer membrane efflux protein AM488_06420 PF06693 AM488_06420 AM488_06425 PF03738 Glutathionylspermidine synthase preATP-grasp AM488_06430 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AM488_06435 PF02535 AM488_06435 AM488_06440 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AM488_06445 PF04380 AM488_06445 AM488_06450 PF08971 Glycogen synthesis protein AM488_06455 PF00294 pfkB family carbohydrate kinase AM488_06455 PF01467 Cytidylyltransferase AM488_06460 PF03710 Glutamate-ammonia ligase adenylyltransferase AM488_06460 PF08335 GlnD PII-uridylyltransferase AM488_06465 PF01928 CYTH domain AM488_06470 PF08239 Bacterial SH3 domain AM488_06475 PF01743 Poly A polymerase head domain AM488_06475 PF01966 HD domain AM488_06475 PF12627 Probable RNA and SrmB- binding site of polymerase A AM488_06480 PF02673 AM488_06480 AM488_06485 PF02152 Dihydroneopterin aldolase AM488_06490 PF02660 AM488_06490 AM488_06500 PF01774 UreD urease accessory protein AM488_06505 PF00547 Urease, gamma subunit AM488_06510 PF00699 Urease beta subunit AM488_06515 PF00449 Urease alpha-subunit, N-terminal domain AM488_06515 PF01979 Amidohydrolase family AM488_06520 PF02814 UreE urease accessory protein, N-terminal domain AM488_06520 PF05194 UreE urease accessory protein, C-terminal domain AM488_06525 PF01730 UreF AM488_06530 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM488_06535 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AM488_06540 PF00814 Glycoprotease family AM488_06550 PF01165 Ribosomal protein S21 AM488_06555 PF01807 CHC2 zinc finger AM488_06555 PF08275 DNA primase catalytic core, N-terminal domain AM488_06555 PF08278 DNA primase DnaG DnaB-binding AM488_06555 PF10410 DnaB-helicase binding domain of primase AM488_06555 PF13155 Toprim-like AM488_06560 PF00140 Sigma-70 factor, region 1 AM488_06560 PF03979 Sigma-70 factor, region 1 AM488_06560 PF04539 Sigma-70 region 3 AM488_06560 PF04542 Sigma-70 region 2 AM488_06560 PF04545 Sigma-70, region 4 AM488_06560 PF04546 Sigma-70, non-essential region AM488_06565 PF03167 Uracil DNA glycosylase superfamily AM488_06580 PF06411 HdeA/HdeB family AM488_06585 PF00072 Response regulator receiver domain AM488_06585 PF00196 Bacterial regulatory proteins, luxR family AM488_06590 PF00072 Response regulator receiver domain AM488_06590 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_06590 PF00512 His Kinase A (phospho-acceptor) domain AM488_06590 PF01627 Hpt domain AM488_06590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_06595 PF10938 YfdX protein AM488_06600 PF03729 AM488_06600 AM488_06605 PF06411 HdeA/HdeB family AM488_06610 PF00230 Major intrinsic protein AM488_06615 PF08841 Diol dehydratase reactivase ATPase-like domain AM488_06620 PF02287 Dehydratase small subunit AM488_06625 PF02288 Dehydratase medium subunit AM488_06630 PF02286 Dehydratase large subunit AM488_06635 PF03928 Domain of unknown function (DUF336) AM488_06640 PF00465 Iron-containing alcohol dehydrogenase AM488_06645 PF02288 Dehydratase medium subunit AM488_06650 PF01923 Cobalamin adenosyltransferase AM488_06655 PF00158 Sigma-54 interaction domain AM488_06655 PF00989 PAS fold AM488_06655 PF01590 GAF domain AM488_06655 PF02954 Bacterial regulatory protein, Fis family AM488_06660 PF00465 Iron-containing alcohol dehydrogenase AM488_06680 PF02733 Dak1 domain AM488_06685 PF02734 DAK2 domain AM488_06690 PF00381 PTS HPr component phosphorylation site AM488_06690 PF00391 PEP-utilising enzyme, mobile domain AM488_06690 PF03610 PTS system fructose IIA component AM488_06690 PF05524 PEP-utilising enzyme, N-terminal AM488_06695 PF02733 Dak1 domain AM488_06695 PF02734 DAK2 domain AM488_06700 PF04954 Siderophore-interacting protein AM488_06700 PF08021 Siderophore-interacting FAD-binding domain AM488_06705 PF03551 Transcriptional regulator PadR-like family AM488_06715 PF00202 Aminotransferase class-III AM488_06720 PF03992 Antibiotic biosynthesis monooxygenase AM488_06725 PF01791 DeoC/LacD family aldolase AM488_06730 PF13407 Periplasmic binding protein domain AM488_06735 PF02653 AM488_06735 AM488_06740 PF02653 AM488_06740 AM488_06745 PF00005 ABC transporter AM488_06750 PF04198 Putative sugar-binding domain AM488_06755 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM488_06755 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM488_06760 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM488_06760 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_06765 PF05175 Methyltransferase small domain AM488_06770 PF03483 B3/4 domain AM488_06775 PF01381 Helix-turn-helix AM488_06775 PF07883 Cupin domain AM488_06780 PF01863 Protein of unknown function DUF45 AM488_06785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM488_06790 PF03741 AM488_06790 AM488_06795 PF00375 Sodium:dicarboxylate symporter family AM488_06800 PF10688 AM488_06800 AM488_06805 PF04295 AM488_06805 AM488_06805 PF08666 SAF domain AM488_06810 PF02614 Glucuronate isomerase AM488_06815 PF07690 Major Facilitator Superfamily AM488_06820 PF00392 Bacterial regulatory proteins, gntR family AM488_06820 PF07729 FCD domain AM488_06825 PF09335 AM488_06825 AM488_06830 PF13721 SecD export protein N-terminal TM region AM488_06835 PF06476 AM488_06835 AM488_06840 PF05957 AM488_06840 AM488_06845 PF07332 AM488_06845 AM488_06850 PF13997 AM488_06850 AM488_06855 PF07681 AM488_06855 AM488_06860 PF13409 Glutathione S-transferase, N-terminal domain AM488_06860 PF13410 Glutathione S-transferase, C-terminal domain AM488_06865 PF05656 AM488_06865 AM488_06870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_06870 PF03466 LysR substrate binding domain AM488_06875 PF02678 Pirin AM488_06880 PF07813 LTXXQ motif family protein AM488_06885 PF12869 tRNA_anti-like AM488_06895 PF02595 Glycerate kinase family AM488_06900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM488_06900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM488_06905 PF03328 HpcH/HpaI aldolase/citrate lyase family AM488_06910 PF07690 Major Facilitator Superfamily AM488_06915 PF04295 AM488_06915 AM488_06915 PF08666 SAF domain AM488_06920 PF00294 pfkB family carbohydrate kinase AM488_06925 PF00455 AM488_06925 AM488_06925 PF08220 DeoR-like helix-turn-helix domain AM488_06930 PF01116 Fructose-bisphosphate aldolase class-II AM488_06935 PF00294 pfkB family carbohydrate kinase AM488_06940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_06940 PF02378 Phosphotransferase system, EIIC AM488_06945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_06945 PF00381 PTS HPr component phosphorylation site AM488_06950 PF08013 Tagatose 6 phosphate kinase AM488_06955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_06960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_06965 PF03611 AM488_06965 AM488_06970 PF00107 Zinc-binding dehydrogenase AM488_06970 PF08240 Alcohol dehydrogenase GroES-like domain AM488_06975 PF00455 AM488_06975 AM488_06975 PF08220 DeoR-like helix-turn-helix domain AM488_06980 PF02661 Fic/DOC family AM488_06980 PF08279 HTH domain AM488_06985 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM488_06990 PF04348 LppC putative lipoprotein AM488_06995 PF02021 Uncharacterised protein family UPF0102 AM488_07000 PF13580 SIS domain AM488_07005 PF04972 BON domain AM488_07010 PF03773 AM488_07010 AM488_07015 PF13460 NADH(P)-binding AM488_07020 PF01965 DJ-1/PfpI family AM488_07030 PF01541 GIY-YIG catalytic domain AM488_07035 PF13508 Acetyltransferase (GNAT) domain AM488_07040 PF02036 SCP-2 sterol transfer family AM488_07045 PF01136 AM488_07045 AM488_07050 PF01136 AM488_07050 AM488_07055 PF00296 Luciferase-like monooxygenase AM488_07060 PF03222 Tryptophan/tyrosine permease family AM488_07065 PF00270 DEAD/DEAH box helicase AM488_07065 PF00271 Helicase conserved C-terminal domain AM488_07065 PF03880 DbpA RNA binding domain AM488_07065 PF12343 AM488_07065 AM488_07075 PF07719 Tetratricopeptide repeat AM488_07075 PF13181 Tetratricopeptide repeat AM488_07080 PF00013 KH domain AM488_07080 PF00575 S1 RNA binding domain AM488_07080 PF01138 3' exoribonuclease family, domain 1 AM488_07080 PF03725 3' exoribonuclease family, domain 2 AM488_07080 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AM488_07090 PF00312 Ribosomal protein S15 AM488_07095 PF01509 TruB family pseudouridylate synthase (N terminal domain) AM488_07095 PF09157 Pseudouridine synthase II TruB, C-terminal AM488_07095 PF16198 AM488_07095 AM488_07100 PF02033 Ribosome-binding factor A AM488_07105 PF00009 Elongation factor Tu GTP binding domain AM488_07105 PF04760 Translation initiation factor IF-2, N-terminal region AM488_07105 PF08364 AM488_07105 AM488_07105 PF11987 Translation-initiation factor 2 AM488_07110 PF00575 S1 RNA binding domain AM488_07110 PF08529 NusA N-terminal domain AM488_07110 PF13184 NusA-like KH domain AM488_07110 PF14520 Helix-hairpin-helix domain AM488_07115 PF02576 Uncharacterised BCR, YhbC family COG0779 AM488_07115 PF17384 AM488_07115 AM488_07125 PF00764 Arginosuccinate synthase AM488_07130 PF15977 AM488_07130 AM488_07135 PF07437 AM488_07135 AM488_07150 PF03840 Preprotein translocase SecG subunit AM488_07155 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM488_07155 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM488_07155 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM488_07155 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM488_07160 PF00809 Pterin binding enzyme AM488_07165 PF00004 ATPase family associated with various cellular activities (AAA) AM488_07165 PF01434 Peptidase family M41 AM488_07165 PF06480 FtsH Extracellular AM488_07170 PF01728 FtsJ-like methyltransferase AM488_07175 PF01985 CRS1 / YhbY (CRM) domain AM488_07180 PF01272 Transcription elongation factor, GreA/GreB, C-term AM488_07180 PF03449 Transcription elongation factor, N-terminal AM488_07185 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AM488_07190 PF01018 GTP1/OBG AM488_07190 PF01926 50S ribosome-binding GTPase AM488_07195 PF00892 EamA-like transporter family AM488_07200 PF01016 Ribosomal L27 protein AM488_07205 PF00829 Ribosomal prokaryotic L21 protein AM488_07210 PF00348 Polyprenyl synthetase AM488_07215 PF13693 Winged helix-turn-helix DNA-binding AM488_07220 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM488_07225 PF01722 BolA-like protein AM488_07230 PF13466 STAS domain AM488_07235 PF05494 Toluene tolerance, Ttg2 AM488_07240 PF02470 AM488_07240 AM488_07245 PF02405 AM488_07245 AM488_07250 PF00005 ABC transporter AM488_07260 PF01699 Sodium/calcium exchanger protein AM488_07265 PF00571 CBS domain AM488_07265 PF01380 SIS domain AM488_07270 PF08282 haloacid dehalogenase-like hydrolase AM488_07275 PF06835 Lipopolysaccharide-assembly, LptC-related AM488_07280 PF03968 OstA-like protein AM488_07285 PF00005 ABC transporter AM488_07285 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM488_07290 PF00309 AM488_07290 AM488_07290 PF04552 Sigma-54, DNA binding domain AM488_07290 PF04963 Sigma-54 factor, core binding domain AM488_07295 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AM488_07300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_07305 PF03668 AM488_07305 AM488_07310 PF00381 PTS HPr component phosphorylation site AM488_07315 PF00912 Transglycosylase AM488_07325 PF00072 Response regulator receiver domain AM488_07325 PF00512 His Kinase A (phospho-acceptor) domain AM488_07325 PF00989 PAS fold AM488_07325 PF01627 Hpt domain AM488_07325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_07330 PF03786 D-mannonate dehydratase (UxuA) AM488_07335 PF00107 Zinc-binding dehydrogenase AM488_07335 PF08240 Alcohol dehydrogenase GroES-like domain AM488_07340 PF07690 Major Facilitator Superfamily AM488_07345 PF04055 Radical SAM superfamily AM488_07345 PF16199 AM488_07345 AM488_07355 PF00310 Glutamine amidotransferases class-II AM488_07355 PF01493 GXGXG motif AM488_07355 PF01645 Conserved region in glutamate synthase AM488_07355 PF04898 Glutamate synthase central domain AM488_07360 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_07360 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AM488_07365 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AM488_07370 PF04386 Stringent starvation protein B AM488_07375 PF00043 Glutathione S-transferase, C-terminal domain AM488_07375 PF02798 Glutathione S-transferase, N-terminal domain AM488_07385 PF00380 Ribosomal protein S9/S16 AM488_07390 PF00572 Ribosomal protein L13 AM488_07395 PF03969 AFG1-like ATPase AM488_07400 PF06295 AM488_07400 AM488_07405 PF00595 PDZ domain (Also known as DHR or GLGF) AM488_07405 PF13180 PDZ domain AM488_07405 PF13365 Trypsin-like peptidase domain AM488_07410 PF13180 PDZ domain AM488_07410 PF13365 Trypsin-like peptidase domain AM488_07415 PF00056 lactate/malate dehydrogenase, NAD binding domain AM488_07415 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AM488_07420 PF01316 Arginine repressor, DNA binding domain AM488_07420 PF02863 Arginine repressor, C-terminal domain AM488_07425 PF07338 Protein of unknown function (DUF1471) AM488_07430 PF07338 Protein of unknown function (DUF1471) AM488_07435 PF01337 Barstar (barnase inhibitor) AM488_07440 PF04632 AM488_07440 AM488_07445 PF13437 HlyD family secretion protein AM488_07445 PF13533 Biotin-lipoyl like AM488_07450 PF07869 AM488_07450 AM488_07455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_07455 PF03466 LysR substrate binding domain AM488_07460 PF01523 Putative modulator of DNA gyrase AM488_07465 PF13116 AM488_07465 AM488_07465 PF13502 AM488_07465 AM488_07470 PF00575 S1 RNA binding domain AM488_07470 PF10150 Ribonuclease E/G family AM488_07475 PF02545 Maf-like protein AM488_07480 PF04093 AM488_07480 AM488_07485 PF04085 rod shape-determining protein MreC AM488_07490 PF06723 MreB/Mbl protein AM488_07500 PF00563 EAL domain AM488_07500 PF00990 GGDEF domain AM488_07500 PF17157 AM488_07500 AM488_07510 PF00174 Oxidoreductase molybdopterin binding domain AM488_07515 PF01794 AM488_07515 AM488_07520 PF01220 Dehydroquinase class II AM488_07530 PF00364 Biotin-requiring enzyme AM488_07535 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AM488_07535 PF02785 Biotin carboxylase C-terminal domain AM488_07535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM488_07540 PF06196 AM488_07540 AM488_07545 PF00474 Sodium:solute symporter family AM488_07550 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AM488_07560 PF01207 Dihydrouridine synthase (Dus) AM488_07565 PF02954 Bacterial regulatory protein, Fis family AM488_07575 PF03354 AM488_07575 AM488_07580 PF05119 AM488_07580 AM488_07590 PF01844 HNH endonuclease AM488_07595 PF05135 Phage gp6-like head-tail connector protein AM488_07600 PF05521 Phage head-tail joining protein AM488_07605 PF04860 Phage portal protein AM488_07610 PF04586 AM488_07610 AM488_07615 PF05065 Phage capsid family AM488_07630 PF06048 AM488_07630 AM488_07665 PF03374 AM488_07665 AM488_07665 PF08346 AM488_07665 AM488_07670 PF05930 Prophage CP4-57 regulatory protein (AlpA) AM488_07680 PF00589 Phage integrase family AM488_07680 PF13356 Domain of unknown function (DUF4102) AM488_07685 PF00440 Bacterial regulatory proteins, tetR family AM488_07685 PF08361 MAATS-type transcriptional repressor, C-terminal region AM488_07690 PF00529 HlyD family secretion protein AM488_07690 PF16576 AM488_07690 AM488_07695 PF00873 AcrB/AcrD/AcrF family AM488_07735 PF00132 Bacterial transferase hexapeptide (six repeats) AM488_07740 PF07369 Protein of unknown function (DUF1488) AM488_07745 PF01488 Shikimate / quinate 5-dehydrogenase AM488_07745 PF08501 Shikimate dehydrogenase substrate binding domain AM488_07750 PF01300 Telomere recombination AM488_07755 PF01396 AM488_07755 AM488_07760 PF04361 AM488_07760 AM488_07765 PF02481 DNA recombination-mediator protein A AM488_07770 PF01327 Polypeptide deformylase AM488_07775 PF00551 Formyl transferase AM488_07775 PF02911 Formyl transferase, C-terminal domain AM488_07780 PF01029 NusB family AM488_07780 PF01189 NOL1/NOP2/sun family AM488_07785 PF02080 TrkA-C domain AM488_07785 PF02254 TrkA-N domain AM488_07790 PF01741 Large-conductance mechanosensitive channel, MscL AM488_07795 PF03889 AM488_07795 AM488_07800 PF13411 MerR HTH family regulatory protein AM488_07805 PF09350 AM488_07805 AM488_07810 PF01196 Ribosomal protein L17 AM488_07815 PF01000 RNA polymerase Rpb3/RpoA insert domain AM488_07815 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AM488_07815 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AM488_07820 PF00163 Ribosomal protein S4/S9 N-terminal domain AM488_07820 PF01479 S4 domain AM488_07825 PF00411 Ribosomal protein S11 AM488_07830 PF00416 Ribosomal protein S13/S18 AM488_07835 PF00444 Ribosomal protein L36 AM488_07840 PF00344 SecY translocase AM488_07845 PF00828 Ribosomal protein L18e/L15 AM488_07850 PF00327 Ribosomal protein L30p/L7e AM488_07855 PF00333 Ribosomal protein S5, N-terminal domain AM488_07855 PF03719 Ribosomal protein S5, C-terminal domain AM488_07860 PF00861 Ribosomal L18p/L5e family AM488_07865 PF00347 Ribosomal protein L6 AM488_07870 PF00410 Ribosomal protein S8 AM488_07875 PF00253 Ribosomal protein S14p/S29e AM488_07880 PF00281 Ribosomal protein L5 AM488_07880 PF00673 ribosomal L5P family C-terminus AM488_07885 PF00467 KOW motif AM488_07885 PF17136 AM488_07885 AM488_07890 PF00238 Ribosomal protein L14p/L23e AM488_07895 PF00366 Ribosomal protein S17 AM488_07900 PF00831 Ribosomal L29 protein AM488_07905 PF00252 Ribosomal protein L16p/L10e AM488_07910 PF00189 Ribosomal protein S3, C-terminal domain AM488_07910 PF07650 KH domain AM488_07915 PF00237 Ribosomal protein L22p/L17e AM488_07920 PF00203 Ribosomal protein S19 AM488_07925 PF00181 Ribosomal Proteins L2, RNA binding domain AM488_07925 PF03947 Ribosomal Proteins L2, C-terminal domain AM488_07930 PF00276 Ribosomal protein L23 AM488_07935 PF00573 Ribosomal protein L4/L1 family AM488_07940 PF00297 Ribosomal protein L3 AM488_07945 PF00338 Ribosomal protein S10p/S20e AM488_07950 PF01478 Type IV leader peptidase family AM488_07955 PF00210 Ferritin-like domain AM488_07960 PF04324 BFD-like [2Fe-2S] binding domain AM488_07970 PF00009 Elongation factor Tu GTP binding domain AM488_07970 PF03143 Elongation factor Tu C-terminal domain AM488_07970 PF03144 Elongation factor Tu domain 2 AM488_07975 PF00009 Elongation factor Tu GTP binding domain AM488_07975 PF00679 Elongation factor G C-terminus AM488_07975 PF03144 Elongation factor Tu domain 2 AM488_07975 PF03764 Elongation factor G, domain IV AM488_07975 PF14492 Elongation Factor G, domain II AM488_07980 PF00177 Ribosomal protein S7p/S5e AM488_07985 PF00164 Ribosomal protein S12/S23 AM488_07990 PF04077 DsrH like protein AM488_07995 PF02635 DsrE/DsrF-like family AM488_08000 PF02635 DsrE/DsrF-like family AM488_08005 PF08348 AM488_08005 AM488_08005 PF13309 AM488_08005 AM488_08010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM488_08010 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM488_08015 PF04102 SlyX AM488_08020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM488_08025 PF09526 AM488_08025 AM488_08030 PF00999 Sodium/hydrogen exchanger family AM488_08030 PF02254 TrkA-N domain AM488_08035 PF02525 Flavodoxin-like fold AM488_08045 PF00005 ABC transporter AM488_08045 PF12848 ABC transporter AM488_08055 PF00561 alpha/beta hydrolase fold AM488_08060 PF06794 Uncharacterised protein family (UPF0270) AM488_08065 PF00485 Phosphoribulokinase / Uridine kinase family AM488_08070 PF02566 OsmC-like protein AM488_08080 PF00027 Cyclic nucleotide-binding domain AM488_08080 PF00325 Bacterial regulatory proteins, crp family AM488_08085 PF12805 AM488_08085 AM488_08085 PF13515 AM488_08085 AM488_08090 PF00202 Aminotransferase class-III AM488_08095 PF00117 Glutamine amidotransferase class-I AM488_08100 PF02661 Fic/DOC family AM488_08105 PF10832 AM488_08105 AM488_08110 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM488_08115 PF07690 Major Facilitator Superfamily AM488_08120 PF07969 Amidohydrolase family AM488_08125 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM488_08125 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM488_08125 PF04324 BFD-like [2Fe-2S] binding domain AM488_08125 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_08130 PF13806 Rieske-like [2Fe-2S] domain AM488_08135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM488_08135 PF10414 Sirohaem synthase dimerisation region AM488_08135 PF13241 Putative NAD(P)-binding AM488_08135 PF14824 Sirohaem biosynthesis protein central AM488_08140 PF00579 tRNA synthetases class I (W and Y) AM488_08145 PF13419 Haloacid dehalogenase-like hydrolase AM488_08150 PF00834 Ribulose-phosphate 3 epimerase family AM488_08155 PF02086 D12 class N6 adenine-specific DNA methyltransferase AM488_08160 PF05036 Sporulation related domain AM488_08165 PF01761 3-dehydroquinate synthase AM488_08170 PF01202 Shikimate kinase AM488_08180 PF00263 AM488_08180 AM488_08180 PF03958 Bacterial type II/III secretion system short domain AM488_08185 PF10748 AM488_08185 AM488_08205 PF00905 Penicillin binding protein transpeptidase domain AM488_08205 PF00912 Transglycosylase AM488_08205 PF17092 AM488_08205 AM488_08210 PF00293 NUDIX domain AM488_08215 PF07095 Intracellular growth attenuator protein IgaA AM488_08220 PF13419 Haloacid dehalogenase-like hydrolase AM488_08225 PF01479 S4 domain AM488_08230 PF01430 Hsp33 protein AM488_08235 PF01293 Phosphoenolpyruvate carboxykinase AM488_08240 PF00512 His Kinase A (phospho-acceptor) domain AM488_08240 PF00672 HAMP domain AM488_08240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_08245 PF00072 Response regulator receiver domain AM488_08245 PF00486 Transcriptional regulatory protein, C terminal AM488_08250 PF01272 Transcription elongation factor, GreA/GreB, C-term AM488_08250 PF03449 Transcription elongation factor, N-terminal AM488_08255 PF00575 S1 RNA binding domain AM488_08255 PF09371 Tex-like protein N-terminal domain AM488_08255 PF12836 Helix-hairpin-helix motif AM488_08255 PF16921 AM488_08255 AM488_08260 PF04023 FeoA domain AM488_08265 PF02421 Ferrous iron transport protein B AM488_08265 PF07664 AM488_08265 AM488_08265 PF07670 Nucleoside recognition AM488_08270 PF09012 FeoC like transcriptional regulator AM488_08275 PF07338 Protein of unknown function (DUF1471) AM488_08280 PF00561 alpha/beta hydrolase fold AM488_08290 PF01106 NifU-like domain AM488_08290 PF01521 Iron-sulphur cluster biosynthesis AM488_08295 PF02447 AM488_08295 AM488_08300 PF02446 4-alpha-glucanotransferase AM488_08305 PF00343 Carbohydrate phosphorylase AM488_08315 PF00196 Bacterial regulatory proteins, luxR family AM488_08315 PF13181 Tetratricopeptide repeat AM488_08320 PF00455 AM488_08320 AM488_08320 PF08220 DeoR-like helix-turn-helix domain AM488_08325 PF01694 Rhomboid family AM488_08325 PF12122 Protein of unknown function (DUF3582) AM488_08330 PF00581 Rhodanese-like domain AM488_08335 PF01266 FAD dependent oxidoreductase AM488_08335 PF16901 AM488_08335 AM488_08340 PF13744 Helix-turn-helix domain AM488_08345 PF05973 AM488_08345 AM488_08350 PF00343 Carbohydrate phosphorylase AM488_08355 PF00534 Glycosyl transferases group 1 AM488_08355 PF08323 Starch synthase catalytic domain AM488_08360 PF00483 Nucleotidyl transferase AM488_08365 PF00128 Alpha amylase, catalytic domain AM488_08365 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AM488_08370 PF00128 Alpha amylase, catalytic domain AM488_08370 PF02806 Alpha amylase, C-terminal all-beta domain AM488_08370 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AM488_08375 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM488_08375 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM488_08385 PF02447 AM488_08385 AM488_08390 PF01202 Shikimate kinase AM488_08395 PF00356 Bacterial regulatory proteins, lacI family AM488_08395 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM488_08400 PF02678 Pirin AM488_08405 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM488_08405 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM488_08410 PF04519 AM488_08410 AM488_08415 PF00583 Acetyltransferase (GNAT) family AM488_08420 PF01019 Gamma-glutamyltranspeptidase AM488_08425 PF10956 AM488_08425 AM488_08430 PF03009 Glycerophosphoryl diester phosphodiesterase family AM488_08435 PF00005 ABC transporter AM488_08435 PF08402 TOBE domain AM488_08440 PF00528 Binding-protein-dependent transport system inner membrane component AM488_08445 PF00528 Binding-protein-dependent transport system inner membrane component AM488_08450 PF13416 Bacterial extracellular solute-binding protein AM488_08455 PF02661 Fic/DOC family AM488_08460 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AM488_08465 PF00005 ABC transporter AM488_08470 PF00005 ABC transporter AM488_08470 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM488_08475 PF02653 AM488_08475 AM488_08475 PF11862 AM488_08475 AM488_08480 PF02653 AM488_08480 AM488_08485 PF13458 Periplasmic binding protein AM488_08495 PF12568 Acetyltransferase (GNAT) domain AM488_08500 PF13458 Periplasmic binding protein AM488_08505 PF03222 Tryptophan/tyrosine permease family AM488_08510 PF00202 Aminotransferase class-III AM488_08515 PF00155 Aminotransferase class I and II AM488_08515 PF00392 Bacterial regulatory proteins, gntR family AM488_08520 PF04542 Sigma-70 region 2 AM488_08520 PF04545 Sigma-70, region 4 AM488_08530 PF00005 ABC transporter AM488_08535 PF00448 SRP54-type protein, GTPase domain AM488_08535 PF02881 SRP54-type protein, helical bundle domain AM488_08540 PF03602 Conserved hypothetical protein 95 AM488_08545 PF06611 AM488_08545 AM488_08550 PF10694 Protein of unknown function (DUF2500) AM488_08555 PF07947 AM488_08555 AM488_08560 PF00122 E1-E2 ATPase AM488_08560 PF00403 Heavy-metal-associated domain AM488_08560 PF00702 haloacid dehalogenase-like hydrolase AM488_08565 PF01206 Sulfurtransferase TusA AM488_08570 PF02592 AM488_08570 AM488_08575 PF08786 Domain of unknown function (DUF1795) AM488_08580 PF07690 Major Facilitator Superfamily AM488_08585 PF01594 AM488_08585 AM488_08595 PF00892 EamA-like transporter family AM488_08600 PF02366 AM488_08600 AM488_08605 PF01522 Polysaccharide deacetylase AM488_08610 PF00551 Formyl transferase AM488_08610 PF01370 NAD dependent epimerase/dehydratase family AM488_08610 PF02911 Formyl transferase, C-terminal domain AM488_08615 PF00535 Glycosyl transferase family 2 AM488_08620 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AM488_08625 PF05870 Phenolic acid decarboxylase (PAD) AM488_08630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_08630 PF03466 LysR substrate binding domain AM488_08640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_08645 PF00528 Binding-protein-dependent transport system inner membrane component AM488_08650 PF00528 Binding-protein-dependent transport system inner membrane component AM488_08655 PF00005 ABC transporter AM488_08660 PF00005 ABC transporter AM488_08665 PF01402 Ribbon-helix-helix protein, copG family AM488_08665 PF08753 NikR C terminal nickel binding domain AM488_08670 PF01769 Divalent cation transporter AM488_08675 PF03486 HI0933-like protein AM488_08680 PF01384 AM488_08680 AM488_08685 PF10625 AM488_08685 AM488_08690 PF00582 Universal stress protein family AM488_08695 PF00854 POT family AM488_08700 PF04445 Putative SAM-dependent methyltransferase AM488_08705 PF01432 Peptidase family M3 AM488_08710 PF01569 PAP2 superfamily AM488_08715 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ AM488_08720 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM488_08720 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_08725 PF00043 Glutathione S-transferase, C-terminal domain AM488_08725 PF02798 Glutathione S-transferase, N-terminal domain AM488_08730 PF00465 Iron-containing alcohol dehydrogenase AM488_08735 PF01204 Trehalase AM488_08740 PF13302 Acetyltransferase (GNAT) domain AM488_08745 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_08750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_08750 PF03466 LysR substrate binding domain AM488_08755 PF03631 AM488_08755 AM488_08760 PF00083 Sugar (and other) transporter AM488_08760 PF07690 Major Facilitator Superfamily AM488_08765 PF05170 AM488_08765 AM488_08775 PF00294 pfkB family carbohydrate kinase AM488_08780 PF00675 Insulinase (Peptidase family M16) AM488_08780 PF05193 Peptidase M16 inactive domain AM488_08785 PF00375 Sodium:dicarboxylate symporter family AM488_08795 PF00563 EAL domain AM488_08795 PF00672 HAMP domain AM488_08795 PF00990 GGDEF domain AM488_08795 PF17154 AM488_08795 AM488_08800 PF05420 AM488_08800 AM488_08800 PF13432 Tetratricopeptide repeat AM488_08800 PF14559 Tetratricopeptide repeat AM488_08805 PF01270 Glycosyl hydrolases family 8 AM488_08810 PF03170 Bacterial cellulose synthase subunit AM488_08815 PF00535 Glycosyl transferase family 2 AM488_08815 PF07238 PilZ domain AM488_08820 PF06564 YhjQ protein AM488_08825 PF10945 AM488_08825 AM488_08830 PF10995 AM488_08830 AM488_08835 PF11120 AM488_08835 AM488_08840 PF11658 AM488_08840 AM488_08845 PF01270 Glycosyl hydrolases family 8 AM488_08850 PF03500 Cellulose synthase subunit D AM488_08855 PF05420 AM488_08855 AM488_08855 PF13432 Tetratricopeptide repeat AM488_08855 PF14559 Tetratricopeptide repeat AM488_08860 PF03170 Bacterial cellulose synthase subunit AM488_08865 PF00535 Glycosyl transferase family 2 AM488_08865 PF03552 Cellulose synthase AM488_08865 PF07238 PilZ domain AM488_08870 PF06564 YhjQ protein AM488_08875 PF17037 AM488_08875 AM488_08885 PF00005 ABC transporter AM488_08885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM488_08890 PF00005 ABC transporter AM488_08890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM488_08895 PF00528 Binding-protein-dependent transport system inner membrane component AM488_08895 PF12911 AM488_08895 AM488_08900 PF00528 Binding-protein-dependent transport system inner membrane component AM488_08905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_08935 PF12796 Ankyrin repeats (3 copies) AM488_08935 PF13857 Ankyrin repeats (many copies) AM488_08940 PF00884 Sulfatase AM488_08940 PF08019 AM488_08940 AM488_08945 PF07690 Major Facilitator Superfamily AM488_08955 PF03352 Methyladenine glycosylase AM488_08960 PF13673 Acetyltransferase (GNAT) domain AM488_08965 PF00384 Molybdopterin oxidoreductase AM488_08965 PF01568 Molydopterin dinucleotide binding domain AM488_08970 PF00691 OmpA family AM488_08970 PF13488 AM488_08970 AM488_08975 PF00356 Bacterial regulatory proteins, lacI family AM488_08975 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM488_08985 PF00294 pfkB family carbohydrate kinase AM488_08990 PF07690 Major Facilitator Superfamily AM488_08995 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM488_08995 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM488_09000 PF11254 AM488_09000 AM488_09010 PF07690 Major Facilitator Superfamily AM488_09015 PF01381 Helix-turn-helix AM488_09020 PF00313 'Cold-shock' DNA-binding domain AM488_09025 PF00005 ABC transporter AM488_09030 PF01848 AM488_09030 AM488_09035 PF02092 AM488_09035 AM488_09035 PF05746 DALR anticodon binding domain AM488_09040 PF02091 Glycyl-tRNA synthetase alpha subunit AM488_09050 PF13983 AM488_09050 AM488_09055 PF01757 AM488_09055 AM488_09060 PF05360 AM488_09060 AM488_09065 PF05360 AM488_09065 AM488_09070 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM488_09070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM488_09085 PF13407 Periplasmic binding protein domain AM488_09090 PF00005 ABC transporter AM488_09095 PF02653 AM488_09095 AM488_09100 PF12833 Helix-turn-helix domain AM488_09100 PF13377 Periplasmic binding protein-like domain AM488_09105 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AM488_09115 PF00128 Alpha amylase, catalytic domain AM488_09120 PF00155 Aminotransferase class I and II AM488_09125 PF12800 4Fe-4S binding domain AM488_09125 PF13247 4Fe-4S dicluster domain AM488_09135 PF00009 Elongation factor Tu GTP binding domain AM488_09135 PF03144 Elongation factor Tu domain 2 AM488_09135 PF09106 Elongation factor SelB, winged helix AM488_09135 PF09107 Elongation factor SelB, winged helix AM488_09140 PF03841 L-seryl-tRNA selenium transferase AM488_09140 PF12390 AM488_09140 AM488_09145 PF00043 Glutathione S-transferase, C-terminal domain AM488_09145 PF13417 Glutathione S-transferase, N-terminal domain AM488_09150 PF13533 Biotin-lipoyl like AM488_09150 PF16576 AM488_09150 AM488_09155 PF11742 AM488_09155 AM488_09160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_09160 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_09160 PF02378 Phosphotransferase system, EIIC AM488_09165 PF01232 Mannitol dehydrogenase Rossmann domain AM488_09165 PF08125 Mannitol dehydrogenase C-terminal domain AM488_09170 PF05068 Mannitol repressor AM488_09180 PF10928 Protein of unknown function (DUF2810) AM488_09185 PF02652 AM488_09185 AM488_09190 PF00392 Bacterial regulatory proteins, gntR family AM488_09190 PF07729 FCD domain AM488_09195 PF01070 FMN-dependent dehydrogenase AM488_09200 PF00588 SpoU rRNA Methylase family AM488_09205 PF00132 Bacterial transferase hexapeptide (six repeats) AM488_09205 PF06426 Serine acetyltransferase, N-terminal AM488_09210 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AM488_09210 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AM488_09215 PF02556 Preprotein translocase subunit SecB AM488_09220 PF00462 Glutaredoxin AM488_09225 PF00581 Rhodanese-like domain AM488_09230 PF01676 Metalloenzyme superfamily AM488_09230 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AM488_09235 PF01551 Peptidase family M23 AM488_09240 PF04748 Divergent polysaccharide deacetylase AM488_09245 PF00535 Glycosyl transferase family 2 AM488_09250 PF00107 Zinc-binding dehydrogenase AM488_09250 PF08240 Alcohol dehydrogenase GroES-like domain AM488_09255 PF00155 Aminotransferase class I and II AM488_09260 PF01370 NAD dependent epimerase/dehydratase family AM488_09265 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AM488_09270 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AM488_09280 PF04932 AM488_09280 AM488_09285 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AM488_09295 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AM488_09300 PF00534 Glycosyl transferases group 1 AM488_09300 PF13439 Glycosyltransferase Family 4 AM488_09305 PF00534 Glycosyl transferases group 1 AM488_09305 PF13439 Glycosyltransferase Family 4 AM488_09310 PF00535 Glycosyl transferase family 2 AM488_09315 PF00534 Glycosyl transferases group 1 AM488_09315 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AM488_09320 PF00535 Glycosyl transferase family 2 AM488_09325 PF01467 Cytidylyltransferase AM488_09330 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AM488_09330 PF06827 Zinc finger found in FPG and IleRS AM488_09330 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AM488_09335 PF00471 Ribosomal protein L33 AM488_09340 PF00830 Ribosomal L28 family AM488_09345 PF04002 RadC-like JAB domain AM488_09350 PF02441 Flavoprotein AM488_09350 PF04127 DNA / pantothenate metabolism flavoprotein AM488_09355 PF00692 dUTPase AM488_09360 PF00440 Bacterial regulatory proteins, tetR family AM488_09365 PF00156 Phosphoribosyl transferase domain AM488_09370 PF01138 3' exoribonuclease family, domain 1 AM488_09370 PF03725 3' exoribonuclease family, domain 2 AM488_09375 PF12698 ABC-2 family transporter protein AM488_09380 PF00005 ABC transporter AM488_09385 PF13437 HlyD family secretion protein AM488_09390 PF01553 Acyltransferase AM488_09390 PF13444 Acetyltransferase (GNAT) domain AM488_09400 PF03755 AM488_09400 AM488_09400 PF08340 AM488_09400 AM488_09405 PF13714 Phosphoenolpyruvate phosphomutase AM488_09410 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM488_09410 PF02805 Metal binding domain of Ada AM488_09410 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM488_09410 PF12833 Helix-turn-helix domain AM488_09415 PF00654 Voltage gated chloride channel AM488_09420 PF03458 AM488_09420 AM488_09425 PF01653 NAD-dependent DNA ligase adenylation domain AM488_09425 PF03120 NAD-dependent DNA ligase OB-fold domain AM488_09430 PF00625 Guanylate kinase AM488_09435 PF01192 RNA polymerase Rpb6 AM488_09440 PF02824 TGS domain AM488_09440 PF04607 Region found in RelA / SpoT proteins AM488_09440 PF13291 ACT domain AM488_09440 PF13328 HD domain AM488_09445 PF00588 SpoU rRNA Methylase family AM488_09445 PF12105 SpoU, rRNA methylase, C-terminal AM488_09450 PF00270 DEAD/DEAH box helicase AM488_09450 PF00271 Helicase conserved C-terminal domain AM488_09450 PF17191 AM488_09450 AM488_09455 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AM488_09460 PF00175 Oxidoreductase NAD-binding domain AM488_09460 PF00970 Oxidoreductase FAD-binding domain AM488_09465 PF05656 AM488_09465 AM488_09470 PF07305 AM488_09470 AM488_09475 PF00121 Triosephosphate isomerase AM488_09480 PF00939 Sodium:sulfate symporter transmembrane region AM488_09485 PF02611 CDP-diacylglycerol pyrophosphatase AM488_09490 PF13531 Bacterial extracellular solute-binding protein AM488_09495 PF06005 Protein of unknown function (DUF904) AM488_09500 PF00230 Major intrinsic protein AM488_09505 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM488_09505 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM488_09510 PF03616 AM488_09510 AM488_09515 PF00860 Permease family AM488_09520 PF05170 AM488_09520 AM488_09525 PF00367 phosphotransferase system, EIIB AM488_09525 PF02378 Phosphotransferase system, EIIC AM488_09530 PF02056 Family 4 glycosyl hydrolase AM488_09530 PF11975 Family 4 glycosyl hydrolase C-terminal domain AM488_09535 PF01380 SIS domain AM488_09535 PF01418 Helix-turn-helix domain, rpiR family AM488_09540 PF01055 Glycosyl hydrolases family 31 AM488_09540 PF13802 Galactose mutarotase-like AM488_09545 PF13347 MFS/sugar transport protein AM488_09560 PF11578 Protein of unknown function (DUF3237) AM488_09565 PF08240 Alcohol dehydrogenase GroES-like domain AM488_09565 PF13602 Zinc-binding dehydrogenase AM488_09570 PF03992 Antibiotic biosynthesis monooxygenase AM488_09575 PF15977 AM488_09575 AM488_09580 PF00107 Zinc-binding dehydrogenase AM488_09580 PF08240 Alcohol dehydrogenase GroES-like domain AM488_09585 PF01965 DJ-1/PfpI family AM488_09585 PF12833 Helix-turn-helix domain AM488_09590 PF12706 Beta-lactamase superfamily domain AM488_09595 PF00293 NUDIX domain AM488_09600 PF00892 EamA-like transporter family AM488_09605 PF03180 NLPA lipoprotein AM488_09610 PF12833 Helix-turn-helix domain AM488_09610 PF12852 Cupin AM488_09615 PF02627 Carboxymuconolactone decarboxylase family AM488_09620 PF07080 Protein of unknown function (DUF1348) AM488_09625 PF01243 Pyridoxamine 5'-phosphate oxidase AM488_09630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_09630 PF03466 LysR substrate binding domain AM488_09635 PF07690 Major Facilitator Superfamily AM488_09640 PF00440 Bacterial regulatory proteins, tetR family AM488_09645 PF00583 Acetyltransferase (GNAT) family AM488_09655 PF00529 HlyD family secretion protein AM488_09655 PF16576 AM488_09655 AM488_09660 PF00873 AcrB/AcrD/AcrF family AM488_09665 PF02321 Outer membrane efflux protein AM488_09670 PF07690 Major Facilitator Superfamily AM488_09675 PF13580 SIS domain AM488_09680 PF00367 phosphotransferase system, EIIB AM488_09680 PF02378 Phosphotransferase system, EIIC AM488_09685 PF00892 EamA-like transporter family AM488_09695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM488_09695 PF09130 Domain of unknown function (DUF1932) AM488_09700 PF04303 PrpF protein AM488_09705 PF03737 Demethylmenaquinone methyltransferase AM488_09710 PF02585 GlcNAc-PI de-N-acetylase AM488_09715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_09715 PF03466 LysR substrate binding domain AM488_09720 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AM488_09720 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AM488_09725 PF07690 Major Facilitator Superfamily AM488_09730 PF00356 Bacterial regulatory proteins, lacI family AM488_09730 PF13377 Periplasmic binding protein-like domain AM488_09735 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_09740 PF02378 Phosphotransferase system, EIIC AM488_09745 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AM488_09750 PF02264 LamB porin AM488_09770 PF00528 Binding-protein-dependent transport system inner membrane component AM488_09775 PF00005 ABC transporter AM488_09775 PF08402 TOBE domain AM488_09780 PF01547 Bacterial extracellular solute-binding protein AM488_09785 PF00392 Bacterial regulatory proteins, gntR family AM488_09785 PF07702 UTRA domain AM488_09795 PF00266 Aminotransferase class-V AM488_09805 PF07690 Major Facilitator Superfamily AM488_09810 PF06296 AM488_09810 AM488_09815 PF01381 Helix-turn-helix AM488_09820 PF06711 AM488_09820 AM488_09825 PF07690 Major Facilitator Superfamily AM488_09830 PF07690 Major Facilitator Superfamily AM488_09835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_09835 PF05231 AM488_09835 AM488_09835 PF07730 Histidine kinase AM488_09840 PF00072 Response regulator receiver domain AM488_09840 PF00196 Bacterial regulatory proteins, luxR family AM488_09845 PF01842 ACT domain AM488_09850 PF00205 Thiamine pyrophosphate enzyme, central domain AM488_09850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM488_09850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM488_09855 PF08049 AM488_09855 AM488_09860 PF13939 AM488_09860 AM488_09865 PF13673 Acetyltransferase (GNAT) domain AM488_09870 PF00892 EamA-like transporter family AM488_09875 PF07690 Major Facilitator Superfamily AM488_09880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_09880 PF03466 LysR substrate binding domain AM488_09885 PF02447 AM488_09885 AM488_09890 PF00291 Pyridoxal-phosphate dependent enzyme AM488_09900 PF02656 AM488_09900 AM488_09905 PF02656 AM488_09905 AM488_09910 PF02056 Family 4 glycosyl hydrolase AM488_09910 PF11975 Family 4 glycosyl hydrolase C-terminal domain AM488_09915 PF00367 phosphotransferase system, EIIB AM488_09915 PF02378 Phosphotransferase system, EIIC AM488_09920 PF00392 Bacterial regulatory proteins, gntR family AM488_09920 PF07702 UTRA domain AM488_09925 PF02080 TrkA-C domain AM488_09925 PF06826 AM488_09925 AM488_09935 PF00011 Hsp20/alpha crystallin family AM488_09940 PF00011 Hsp20/alpha crystallin family AM488_09945 PF07119 AM488_09945 AM488_09950 PF07676 WD40-like Beta Propeller Repeat AM488_09950 PF12566 AM488_09950 AM488_09955 PF07690 Major Facilitator Superfamily AM488_09960 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM488_09960 PF13378 Enolase C-terminal domain-like AM488_09965 PF01081 KDPG and KHG aldolase AM488_09970 PF05035 2-keto-3-deoxy-galactonokinase AM488_09975 PF00392 Bacterial regulatory proteins, gntR family AM488_09975 PF07729 FCD domain AM488_09980 PF01103 Surface antigen AM488_09990 PF08282 haloacid dehalogenase-like hydrolase AM488_09995 PF00204 DNA gyrase B AM488_09995 PF00986 DNA gyrase B subunit, carboxyl terminus AM488_09995 PF01751 Toprim domain AM488_09995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_10000 PF02463 RecF/RecN/SMC N terminal domain AM488_10005 PF00712 DNA polymerase III beta subunit, N-terminal domain AM488_10005 PF02767 DNA polymerase III beta subunit, central domain AM488_10005 PF02768 DNA polymerase III beta subunit, C-terminal domain AM488_10010 PF00308 Bacterial dnaA protein AM488_10010 PF08299 Bacterial dnaA protein helix-turn-helix AM488_10010 PF11638 DnaA N-terminal domain AM488_10020 PF00468 Ribosomal protein L34 AM488_10025 PF00825 Ribonuclease P AM488_10030 PF01809 AM488_10030 AM488_10035 PF02096 60Kd inner membrane protein AM488_10035 PF14849 YidC periplasmic domain AM488_10045 PF01926 50S ribosome-binding GTPase AM488_10045 PF10396 GTP-binding protein TrmE N-terminus AM488_10045 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE AM488_10050 PF00583 Acetyltransferase (GNAT) family AM488_10055 PF07690 Major Facilitator Superfamily AM488_10060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_10060 PF03466 LysR substrate binding domain AM488_10070 PF03358 NADPH-dependent FMN reductase AM488_10075 PF00860 Permease family AM488_10085 PF13419 Haloacid dehalogenase-like hydrolase AM488_10090 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AM488_10095 PF00756 Putative esterase AM488_10095 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AM488_10100 PF02264 LamB porin AM488_10100 PF11471 AM488_10100 AM488_10110 PF01895 PhoU domain AM488_10115 PF00005 ABC transporter AM488_10120 PF00528 Binding-protein-dependent transport system inner membrane component AM488_10125 PF00528 Binding-protein-dependent transport system inner membrane component AM488_10130 PF12849 PBP superfamily domain AM488_10135 PF01380 SIS domain AM488_10135 PF13522 Glutamine amidotransferase domain AM488_10140 PF00132 Bacterial transferase hexapeptide (six repeats) AM488_10140 PF12804 MobA-like NTP transferase domain AM488_10145 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AM488_10145 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AM488_10150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM488_10150 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM488_10155 PF00231 ATP synthase AM488_10160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM488_10160 PF00306 ATP synthase alpha/beta chain, C terminal domain AM488_10160 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM488_10165 PF00213 ATP synthase delta (OSCP) subunit AM488_10170 PF00430 ATP synthase B/B' CF(0) AM488_10175 PF00137 ATP synthase subunit C AM488_10180 PF00119 ATP synthase A chain AM488_10185 PF03899 AM488_10185 AM488_10190 PF02527 rRNA small subunit methyltransferase G AM488_10195 PF01134 Glucose inhibited division protein A AM488_10195 PF13932 GidA associated domain 3 AM488_10200 PF00258 Flavodoxin AM488_10205 PF01037 AsnC family AM488_10205 PF13404 AsnC-type helix-turn-helix domain AM488_10210 PF03590 Aspartate-ammonia ligase AM488_10215 PF05762 VWA domain containing CoxE-like protein AM488_10220 PF07728 AAA domain (dynein-related subfamily) AM488_10220 PF12592 Protein of unknown function (DUF3763) AM488_10225 PF02705 AM488_10225 AM488_10230 PF05025 RbsD / FucU transport protein family AM488_10235 PF00005 ABC transporter AM488_10240 PF02653 AM488_10240 AM488_10245 PF13407 Periplasmic binding protein domain AM488_10250 PF00294 pfkB family carbohydrate kinase AM488_10255 PF00356 Bacterial regulatory proteins, lacI family AM488_10255 PF13377 Periplasmic binding protein-like domain AM488_10260 PF07690 Major Facilitator Superfamily AM488_10265 PF00392 Bacterial regulatory proteins, gntR family AM488_10265 PF07729 FCD domain AM488_10295 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AM488_10300 PF12804 MobA-like NTP transferase domain AM488_10305 PF06288 Protein of unknown function (DUF1040) AM488_10310 PF01636 Phosphotransferase enzyme family AM488_10315 PF01323 DSBA-like thioredoxin domain AM488_10320 PF01553 Acyltransferase AM488_10330 PF00476 DNA polymerase family A AM488_10330 PF01367 5'-3' exonuclease, C-terminal SAM fold AM488_10330 PF01612 3'-5' exonuclease AM488_10330 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AM488_10335 PF01926 50S ribosome-binding GTPase AM488_10340 PF04220 AM488_10340 AM488_10350 PF04055 Radical SAM superfamily AM488_10350 PF06969 HemN C-terminal domain AM488_10355 PF00072 Response regulator receiver domain AM488_10355 PF00158 Sigma-54 interaction domain AM488_10355 PF02954 Bacterial regulatory protein, Fis family AM488_10360 PF00512 His Kinase A (phospho-acceptor) domain AM488_10360 PF00989 PAS fold AM488_10360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_10365 PF00120 Glutamine synthetase, catalytic domain AM488_10365 PF03951 Glutamine synthetase, beta-Grasp domain AM488_10375 PF00009 Elongation factor Tu GTP binding domain AM488_10375 PF00679 Elongation factor G C-terminus AM488_10375 PF03144 Elongation factor Tu domain 2 AM488_10380 PF13419 Haloacid dehalogenase-like hydrolase AM488_10385 PF03631 AM488_10385 AM488_10390 PF02580 D-Tyr-tRNA(Tyr) deacylase AM488_10395 PF00583 Acetyltransferase (GNAT) family AM488_10395 PF09500 Putative thioesterase (yiiD_Cterm) AM488_10400 PF07859 alpha/beta hydrolase fold AM488_10405 PF12651 AM488_10405 AM488_10410 PF01850 PIN domain AM488_10415 PF04216 Protein involved in formate dehydrogenase formation AM488_10420 PF01292 Prokaryotic cytochrome b561 AM488_10425 PF09163 Formate dehydrogenase N, transmembrane AM488_10425 PF13247 4Fe-4S dicluster domain AM488_10440 PF02634 FdhD/NarQ family AM488_10445 PF07338 Protein of unknown function (DUF1471) AM488_10450 PF00365 Phosphofructokinase AM488_10455 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_10460 PF03611 AM488_10460 AM488_10465 PF01116 Fructose-bisphosphate aldolase class-II AM488_10475 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_10485 PF05437 AM488_10485 AM488_10490 PF03591 AM488_10490 AM488_10495 PF01381 Helix-turn-helix AM488_10495 PF07883 Cupin domain AM488_10500 PF00356 Bacterial regulatory proteins, lacI family AM488_10500 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM488_10505 PF02065 Melibiase AM488_10505 PF16874 AM488_10505 AM488_10505 PF16875 AM488_10505 AM488_10510 PF01306 LacY proton/sugar symporter AM488_10515 PF05336 Domain of unknown function (DUF718) AM488_10520 PF00465 Iron-containing alcohol dehydrogenase AM488_10525 PF02653 AM488_10525 AM488_10530 PF02653 AM488_10530 AM488_10535 PF00005 ABC transporter AM488_10540 PF13407 Periplasmic binding protein domain AM488_10545 PF00596 Class II Aldolase and Adducin N-terminal domain AM488_10550 PF06134 L-rhamnose isomerase (RhaA) AM488_10555 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM488_10555 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM488_10565 PF02311 AraC-like ligand binding domain AM488_10565 PF12833 Helix-turn-helix domain AM488_10570 PF02311 AraC-like ligand binding domain AM488_10570 PF12833 Helix-turn-helix domain AM488_10575 PF06379 AM488_10575 AM488_10580 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AM488_10580 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AM488_10585 PF03473 MOSC domain AM488_10585 PF03475 3-alpha domain AM488_10590 PF00512 His Kinase A (phospho-acceptor) domain AM488_10590 PF00672 HAMP domain AM488_10590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_10590 PF16527 AM488_10590 AM488_10595 PF00072 Response regulator receiver domain AM488_10595 PF00486 Transcriptional regulatory protein, C terminal AM488_10600 PF07813 LTXXQ motif family protein AM488_10605 PF01545 Cation efflux family AM488_10605 PF16916 AM488_10605 AM488_10610 PF00365 Phosphofructokinase AM488_10615 PF03737 Demethylmenaquinone methyltransferase AM488_10620 PF01040 UbiA prenyltransferase family AM488_10625 PF00004 ATPase family associated with various cellular activities (AAA) AM488_10625 PF07724 AAA domain (Cdc48 subfamily) AM488_10625 PF10431 C-terminal, D2-small domain, of ClpB protein AM488_10630 PF00227 Proteasome subunit AM488_10635 PF05036 Sporulation related domain AM488_10640 PF00356 Bacterial regulatory proteins, lacI family AM488_10640 PF13377 Periplasmic binding protein-like domain AM488_10645 PF00270 DEAD/DEAH box helicase AM488_10645 PF00271 Helicase conserved C-terminal domain AM488_10650 PF01197 Ribosomal protein L31 AM488_10655 PF01340 Met Apo-repressor, MetJ AM488_10660 PF01053 Cys/Met metabolism PLP-dependent enzyme AM488_10665 PF00696 Amino acid kinase family AM488_10665 PF00742 Homoserine dehydrogenase AM488_10665 PF03447 Homoserine dehydrogenase, NAD binding domain AM488_10670 PF03811 AM488_10670 AM488_10675 PF00149 Calcineurin-like phosphoesterase AM488_10675 PF02872 5'-nucleotidase, C-terminal domain AM488_10680 PF02627 Carboxymuconolactone decarboxylase family AM488_10685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_10685 PF03466 LysR substrate binding domain AM488_10690 PF02219 Methylenetetrahydrofolate reductase AM488_10695 PF00892 EamA-like transporter family AM488_10700 PF00465 Iron-containing alcohol dehydrogenase AM488_10705 PF00923 Transaldolase AM488_10710 PF12833 Helix-turn-helix domain AM488_10715 PF09223 YodA lipocalin-like domain AM488_10720 PF00311 Phosphoenolpyruvate carboxylase AM488_10725 PF01546 Peptidase family M20/M25/M40 AM488_10725 PF07687 Peptidase dimerisation domain AM488_10730 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM488_10730 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM488_10735 PF00696 Amino acid kinase family AM488_10745 PF00206 Lyase AM488_10745 PF14698 Argininosuccinate lyase C-terminal AM488_10755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_10755 PF03466 LysR substrate binding domain AM488_10760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM488_10760 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_10765 PF00440 Bacterial regulatory proteins, tetR family AM488_10770 PF07226 AM488_10770 AM488_10775 PF05958 tRNA (Uracil-5-)-methyltransferase AM488_10780 PF00593 TonB dependent receptor AM488_10780 PF07715 TonB-dependent Receptor Plug Domain AM488_10785 PF01177 Asp/Glu/Hydantoin racemase AM488_10825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_10825 PF03466 LysR substrate binding domain AM488_10830 PF04219 AM488_10830 AM488_10835 PF01078 Magnesium chelatase, subunit ChlI AM488_10835 PF13335 AM488_10835 AM488_10835 PF13541 Subunit ChlI of Mg-chelatase AM488_10840 PF08046 AM488_10840 AM488_10845 PF00205 Thiamine pyrophosphate enzyme, central domain AM488_10845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM488_10845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM488_10850 PF13710 ACT domain AM488_10855 PF01063 Aminotransferase class IV AM488_10860 PF00920 Dehydratase family AM488_10865 PF00291 Pyridoxal-phosphate dependent enzyme AM488_10865 PF00585 C-terminal regulatory domain of Threonine dehydratase AM488_10870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_10870 PF03466 LysR substrate binding domain AM488_10875 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AM488_10875 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AM488_10880 PF13616 PPIC-type PPIASE domain AM488_10885 PF13616 PPIC-type PPIASE domain AM488_10890 PF00580 UvrD/REP helicase N-terminal domain AM488_10890 PF13361 UvrD-like helicase C-terminal domain AM488_10895 PF04474 AM488_10895 AM488_10900 PF04909 Amidohydrolase AM488_10905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_10905 PF03466 LysR substrate binding domain AM488_10910 PF02541 Ppx/GppA phosphatase family AM488_10920 PF00270 DEAD/DEAH box helicase AM488_10920 PF00271 Helicase conserved C-terminal domain AM488_10925 PF00085 Thioredoxin AM488_10935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM488_10935 PF07497 Rho termination factor, RNA-binding domain AM488_10935 PF07498 Rho termination factor, N-terminal domain AM488_10940 PF00953 Glycosyl transferase family 4 AM488_10945 PF02706 Chain length determinant protein AM488_10950 PF02350 UDP-N-acetylglucosamine 2-epimerase AM488_10955 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM488_10955 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM488_10955 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM488_10960 PF16363 AM488_10960 AM488_10965 PF00483 Nucleotidyl transferase AM488_10975 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AM488_10980 PF01943 AM488_10980 AM488_10985 PF07429 AM488_10985 AM488_10990 PF06899 AM488_10990 AM488_10995 PF03808 AM488_10995 AM488_11000 PF00324 Amino acid permease AM488_11025 PF07219 AM488_11025 AM488_11025 PF07719 Tetratricopeptide repeat AM488_11030 PF04375 AM488_11030 AM488_11035 PF02602 Uroporphyrinogen-III synthase HemD AM488_11040 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AM488_11040 PF03900 Porphobilinogen deaminase, C-terminal domain AM488_11045 PF01295 AM488_11045 AM488_11045 PF12633 AM488_11045 AM488_11050 PF01491 Frataxin-like domain AM488_11055 PF13627 AM488_11055 AM488_11060 PF01678 Diaminopimelate epimerase AM488_11065 PF04340 Protein of unknown function, DUF484 AM488_11070 PF00589 Phage integrase family AM488_11070 PF02899 Phage integrase, N-terminal SAM-like domain AM488_11075 PF13419 Haloacid dehalogenase-like hydrolase AM488_11080 PF00580 UvrD/REP helicase N-terminal domain AM488_11080 PF13361 UvrD-like helicase C-terminal domain AM488_11090 PF01544 CorA-like Mg2+ transporter protein AM488_11095 PF00892 EamA-like transporter family AM488_11100 PF03061 Thioesterase superfamily AM488_11105 PF02253 Phospholipase A1 AM488_11110 PF00270 DEAD/DEAH box helicase AM488_11110 PF00271 Helicase conserved C-terminal domain AM488_11110 PF00570 HRDC domain AM488_11110 PF09382 RQC domain AM488_11110 PF16124 AM488_11110 AM488_11115 PF01810 AM488_11115 AM488_11120 PF04754 AM488_11120 AM488_11125 PF01810 AM488_11125 AM488_11130 PF12146 Putative lysophospholipase AM488_11135 PF08282 haloacid dehalogenase-like hydrolase AM488_11140 PF00892 EamA-like transporter family AM488_11145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_11145 PF03466 LysR substrate binding domain AM488_11150 PF01717 Cobalamin-independent synthase, Catalytic domain AM488_11150 PF08267 Cobalamin-independent synthase, N-terminal domain AM488_11155 PF01738 Dienelactone hydrolase family AM488_11160 PF01048 Phosphorylase superfamily AM488_11165 PF02646 AM488_11165 AM488_11170 PF01209 ubiE/COQ5 methyltransferase family AM488_11175 PF02036 SCP-2 sterol transfer family AM488_11180 PF03109 AM488_11180 AM488_11185 PF02416 mttA/Hcf106 family AM488_11195 PF00902 Sec-independent protein translocase protein (TatC) AM488_11200 PF01026 TatD related DNase AM488_11205 PF02357 Transcription termination factor nusG AM488_11210 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AM488_11215 PF00175 Oxidoreductase NAD-binding domain AM488_11215 PF00970 Oxidoreductase FAD-binding domain AM488_11220 PF00108 Thiolase, N-terminal domain AM488_11220 PF02803 Thiolase, C-terminal domain AM488_11225 PF00378 Enoyl-CoA hydratase/isomerase family AM488_11225 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM488_11225 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM488_11235 PF00557 Metallopeptidase family M24 AM488_11240 PF01205 Uncharacterized protein family UPF0029 AM488_11240 PF09186 Domain of unknown function (DUF1949) AM488_11245 PF02386 Cation transport protein AM488_11250 PF12724 Flavodoxin domain AM488_11280 PF01565 FAD binding domain AM488_11280 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AM488_11285 PF02237 Biotin protein ligase C terminal domain AM488_11285 PF03099 Biotin/lipoate A/B protein ligase family AM488_11285 PF08279 HTH domain AM488_11290 PF00485 Phosphoribulokinase / Uridine kinase family AM488_11315 PF00009 Elongation factor Tu GTP binding domain AM488_11315 PF03143 Elongation factor Tu C-terminal domain AM488_11315 PF03144 Elongation factor Tu domain 2 AM488_11325 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AM488_11330 PF00467 KOW motif AM488_11330 PF02357 Transcription termination factor nusG AM488_11335 PF00298 Ribosomal protein L11, RNA binding domain AM488_11335 PF03946 Ribosomal protein L11, N-terminal domain AM488_11340 PF00687 Ribosomal protein L1p/L10e family AM488_11350 PF00466 Ribosomal protein L10 AM488_11355 PF00542 Ribosomal protein L7/L12 C-terminal domain AM488_11355 PF16320 AM488_11355 AM488_11360 PF00562 RNA polymerase Rpb2, domain 6 AM488_11360 PF04560 RNA polymerase Rpb2, domain 7 AM488_11360 PF04561 RNA polymerase Rpb2, domain 2 AM488_11360 PF04563 RNA polymerase beta subunit AM488_11360 PF04565 RNA polymerase Rpb2, domain 3 AM488_11360 PF10385 RNA polymerase beta subunit external 1 domain AM488_11365 PF00623 RNA polymerase Rpb1, domain 2 AM488_11365 PF04983 RNA polymerase Rpb1, domain 3 AM488_11365 PF04997 RNA polymerase Rpb1, domain 1 AM488_11365 PF04998 RNA polymerase Rpb1, domain 5 AM488_11365 PF05000 RNA polymerase Rpb1, domain 4 AM488_11370 PF03605 AM488_11370 AM488_11375 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AM488_11380 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_11385 PF00990 GGDEF domain AM488_11385 PF02743 Cache domain AM488_11395 PF04055 Radical SAM superfamily AM488_11395 PF06968 Biotin and Thiamin Synthesis associated domain AM488_11400 PF05690 Thiazole biosynthesis protein ThiG AM488_11405 PF02597 ThiS family AM488_11410 PF00899 ThiF family AM488_11415 PF02581 Thiamine monophosphate synthase/TENI AM488_11420 PF01964 ThiC family AM488_11420 PF13667 ThiC-associated domain AM488_11425 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AM488_11430 PF00293 NUDIX domain AM488_11430 PF09297 NADH pyrophosphatase zinc ribbon domain AM488_11435 PF01208 Uroporphyrinogen decarboxylase (URO-D) AM488_11440 PF04493 Endonuclease V AM488_11445 PF04222 Protein of unknown function (DUF416) AM488_11450 PF00216 Bacterial DNA-binding protein AM488_11455 PF07356 AM488_11455 AM488_11455 PF08139 AM488_11455 AM488_11460 PF13801 Heavy-metal resistance AM488_11465 PF00512 His Kinase A (phospho-acceptor) domain AM488_11465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_11465 PF17203 AM488_11465 AM488_11470 PF00072 Response regulator receiver domain AM488_11470 PF00158 Sigma-54 interaction domain AM488_11470 PF02954 Bacterial regulatory protein, Fis family AM488_11475 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AM488_11475 PF02843 Phosphoribosylglycinamide synthetase, C domain AM488_11475 PF02844 Phosphoribosylglycinamide synthetase, N domain AM488_11480 PF01808 AICARFT/IMPCHase bienzyme AM488_11480 PF02142 MGS-like domain AM488_11520 PF13673 Acetyltransferase (GNAT) domain AM488_11525 PF04204 Homoserine O-succinyltransferase AM488_11530 PF01274 Malate synthase AM488_11535 PF00463 Isocitrate lyase family AM488_11540 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AM488_11545 PF01614 Bacterial transcriptional regulator AM488_11545 PF09339 IclR helix-turn-helix domain AM488_11550 PF00809 Pterin binding enzyme AM488_11550 PF02310 B12 binding domain AM488_11550 PF02574 Homocysteine S-methyltransferase AM488_11550 PF02607 B12 binding domain AM488_11550 PF02965 Vitamin B12 dependent methionine synthase, activation domain AM488_11570 PF01488 Shikimate / quinate 5-dehydrogenase AM488_11570 PF08501 Shikimate dehydrogenase substrate binding domain AM488_11575 PF00107 Zinc-binding dehydrogenase AM488_11575 PF08240 Alcohol dehydrogenase GroES-like domain AM488_11580 PF03613 AM488_11580 AM488_11585 PF03609 AM488_11585 AM488_11590 PF03830 PTS system sorbose subfamily IIB component AM488_11595 PF03610 PTS system fructose IIA component AM488_11600 PF00106 short chain dehydrogenase AM488_11605 PF04198 Putative sugar-binding domain AM488_11605 PF13936 Helix-turn-helix domain AM488_11610 PF00849 RNA pseudouridylate synthase AM488_11610 PF01479 S4 domain AM488_11615 PF11656 AM488_11615 AM488_11620 PF01758 Sodium Bile acid symporter family AM488_11625 PF00696 Amino acid kinase family AM488_11640 PF00342 Phosphoglucose isomerase AM488_11645 PF00132 Bacterial transferase hexapeptide (six repeats) AM488_11645 PF14602 Hexapeptide repeat of succinyl-transferase AM488_11650 PF00583 Acetyltransferase (GNAT) family AM488_11655 PF01042 Endoribonuclease L-PSP AM488_11660 PF05437 AM488_11660 AM488_11665 PF03591 AM488_11665 AM488_11670 PF03313 AM488_11670 AM488_11675 PF06146 AM488_11675 AM488_11680 PF00528 Binding-protein-dependent transport system inner membrane component AM488_11685 PF00528 Binding-protein-dependent transport system inner membrane component AM488_11685 PF14785 Maltose transport system permease protein MalF P2 domain AM488_11690 PF13416 Bacterial extracellular solute-binding protein AM488_11700 PF00005 ABC transporter AM488_11700 PF08402 TOBE domain AM488_11705 PF02264 LamB porin AM488_11710 PF07148 AM488_11710 AM488_11715 PF04345 Chorismate lyase AM488_11720 PF01040 UbiA prenyltransferase family AM488_11725 PF01553 Acyltransferase AM488_11730 PF01219 Prokaryotic diacylglycerol kinase AM488_11735 PF00717 Peptidase S24-like AM488_11735 PF01726 LexA DNA binding domain AM488_11740 PF01554 MatE AM488_11745 PF05532 CsbD-like AM488_11750 PF01475 Ferric uptake regulator family AM488_11755 PF07883 Cupin domain AM488_11760 PF01207 Dihydrouridine synthase (Dus) AM488_11765 PF09583 AM488_11765 AM488_11770 PF00107 Zinc-binding dehydrogenase AM488_11770 PF08240 Alcohol dehydrogenase GroES-like domain AM488_11775 PF00772 DnaB-like helicase N terminal domain AM488_11775 PF03796 DnaB-like helicase C terminal domain AM488_11780 PF00842 Alanine racemase, C-terminal domain AM488_11780 PF01168 Alanine racemase, N-terminal domain AM488_11785 PF00155 Aminotransferase class I and II AM488_11790 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AM488_11795 PF01894 Uncharacterised protein family UPF0047 AM488_11800 PF04237 YjbR AM488_11805 PF00005 ABC transporter AM488_11815 PF00436 Single-strand binding protein family AM488_11820 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_11820 PF01464 Transglycosylase SLT domain AM488_11825 PF00593 TonB dependent receptor AM488_11825 PF07715 TonB-dependent Receptor Plug Domain AM488_11830 PF12833 Helix-turn-helix domain AM488_11835 PF07519 Tannase and feruloyl esterase AM488_11845 PF13737 AM488_11845 AM488_11850 PF01103 Surface antigen AM488_11850 PF07244 Surface antigen variable number repeat AM488_11860 PF11183 Polymyxin resistance protein PmrD AM488_11865 PF00459 Inositol monophosphatase family AM488_11870 PF00356 Bacterial regulatory proteins, lacI family AM488_11870 PF13377 Periplasmic binding protein-like domain AM488_11875 PF12706 Beta-lactamase superfamily domain AM488_11880 PF00005 ABC transporter AM488_11885 PF13416 Bacterial extracellular solute-binding protein AM488_11890 PF00528 Binding-protein-dependent transport system inner membrane component AM488_11895 PF00528 Binding-protein-dependent transport system inner membrane component AM488_11900 PF15940 AM488_11900 AM488_11910 PF00563 EAL domain AM488_11910 PF12792 AM488_11910 AM488_11915 PF12833 Helix-turn-helix domain AM488_11920 PF00376 MerR family regulatory protein AM488_11920 PF09278 MerR, DNA binding AM488_11925 PF00043 Glutathione S-transferase, C-terminal domain AM488_11925 PF02798 Glutathione S-transferase, N-terminal domain AM488_11930 PF00860 Permease family AM488_11935 PF00999 Sodium/hydrogen exchanger family AM488_11940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_11940 PF03466 LysR substrate binding domain AM488_11945 PF03788 AM488_11945 AM488_11950 PF04172 AM488_11950 AM488_11955 PF00419 Fimbrial protein AM488_11960 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM488_11960 PF02753 Pili assembly chaperone PapD, C-terminal domain AM488_11965 PF00577 Outer membrane usher protein AM488_11965 PF13953 PapC C-terminal domain AM488_11965 PF13954 PapC N-terminal domain AM488_11970 PF00419 Fimbrial protein AM488_11975 PF00419 Fimbrial protein AM488_11980 PF00474 Sodium:solute symporter family AM488_11985 PF04341 AM488_11985 AM488_11995 PF00501 AMP-binding enzyme AM488_11995 PF13193 AMP-binding enzyme C-terminal domain AM488_11995 PF16177 AM488_11995 AM488_12005 PF00375 Sodium:dicarboxylate symporter family AM488_12010 PF08238 Sel1 repeat AM488_12020 PF00072 Response regulator receiver domain AM488_12020 PF00486 Transcriptional regulatory protein, C terminal AM488_12025 PF11459 AM488_12025 AM488_12025 PF17194 AM488_12025 AM488_12030 PF08843 Nucleotidyl transferase of unknown function (DUF1814) AM488_12035 PF00294 pfkB family carbohydrate kinase AM488_12040 PF13407 Periplasmic binding protein domain AM488_12045 PF02653 AM488_12045 AM488_12050 PF00005 ABC transporter AM488_12055 PF00072 Response regulator receiver domain AM488_12055 PF00512 His Kinase A (phospho-acceptor) domain AM488_12055 PF00672 HAMP domain AM488_12055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_12065 PF12706 Beta-lactamase superfamily domain AM488_12070 PF13238 AAA domain AM488_12075 PF07969 Amidohydrolase family AM488_12080 PF00005 ABC transporter AM488_12085 PF00005 ABC transporter AM488_12090 PF06007 AM488_12090 AM488_12095 PF05861 AM488_12095 AM488_12100 PF05845 Bacterial phosphonate metabolism protein (PhnH) AM488_12105 PF06754 AM488_12105 AM488_12110 PF00392 Bacterial regulatory proteins, gntR family AM488_12110 PF07702 UTRA domain AM488_12115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_12120 PF03831 PhnA protein AM488_12120 PF08274 PhnA Zinc-Ribbon AM488_12130 PF00083 Sugar (and other) transporter AM488_12130 PF08946 Osmosensory transporter coiled coil AM488_12135 PF12833 Helix-turn-helix domain AM488_12145 PF02056 Family 4 glycosyl hydrolase AM488_12145 PF11975 Family 4 glycosyl hydrolase C-terminal domain AM488_12150 PF13347 MFS/sugar transport protein AM488_12155 PF06406 StbA protein AM488_12160 PF10784 Plasmid stability protein AM488_12170 PF13591 MerR HTH family regulatory protein AM488_12175 PF00226 DnaJ domain AM488_12175 PF01556 DnaJ C terminal domain AM488_12180 PF03741 AM488_12180 AM488_12190 PF13462 Thioredoxin AM488_12195 PF13994 AM488_12195 AM488_12200 PF13641 Glycosyltransferase like family 2 AM488_12205 PF01522 Polysaccharide deacetylase AM488_12205 PF14883 Hypothetical glycosyl hydrolase family 13 AM488_12210 PF04575 AM488_12210 AM488_12215 PF00196 Bacterial regulatory proteins, luxR family AM488_12220 PF06069 AM488_12220 AM488_12235 PF06674 AM488_12235 AM488_12245 PF02683 AM488_12245 AM488_12245 PF11412 Disulphide bond corrector protein DsbC AM488_12245 PF13899 Thioredoxin-like AM488_12250 PF03091 CutA1 divalent ion tolerance protein AM488_12255 PF03605 AM488_12255 AM488_12260 PF00206 Lyase AM488_12260 PF10415 Fumarase C C-terminus AM488_12270 PF04186 AM488_12270 AM488_12275 PF13520 Amino acid permease AM488_12280 PF00166 Chaperonin 10 Kd subunit AM488_12285 PF00118 TCP-1/cpn60 chaperonin family AM488_12290 PF13698 AM488_12290 AM488_12295 PF15922 AM488_12295 AM488_12300 PF00005 ABC transporter AM488_12300 PF00664 ABC transporter transmembrane region AM488_12300 PF03412 Peptidase C39 family AM488_12305 PF00529 HlyD family secretion protein AM488_12305 PF13533 Biotin-lipoyl like AM488_12305 PF16576 AM488_12305 AM488_12320 PF00419 Fimbrial protein AM488_12325 PF00577 Outer membrane usher protein AM488_12325 PF13953 PapC C-terminal domain AM488_12325 PF13954 PapC N-terminal domain AM488_12330 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM488_12330 PF02753 Pili assembly chaperone PapD, C-terminal domain AM488_12335 PF00419 Fimbrial protein AM488_12340 PF00486 Transcriptional regulatory protein, C terminal AM488_12345 PF04055 Radical SAM superfamily AM488_12345 PF13353 4Fe-4S single cluster domain AM488_12350 PF01132 Elongation factor P (EF-P) OB domain AM488_12350 PF08207 Elongation factor P (EF-P) KOW-like domain AM488_12350 PF09285 Elongation factor P, C-terminal AM488_12355 PF08085 AM488_12355 AM488_12360 PF08085 AM488_12360 AM488_12365 PF00893 Small Multidrug Resistance protein AM488_12370 PF08212 Lipocalin-like domain AM488_12375 PF02313 Fumarate reductase subunit D AM488_12380 PF02300 Fumarate reductase subunit C AM488_12385 PF13085 2Fe-2S iron-sulfur cluster binding domain AM488_12385 PF13183 4Fe-4S dicluster domain AM488_12390 PF00890 FAD binding domain AM488_12390 PF02910 Fumarate reductase flavoprotein C-term AM488_12395 PF00152 tRNA synthetases class II (D, K and N) AM488_12400 PF13520 Amino acid permease AM488_12405 PF00924 Mechanosensitive ion channel AM488_12405 PF12794 AM488_12405 AM488_12405 PF12795 AM488_12405 AM488_12410 PF02666 AM488_12410 AM488_12415 PF03193 Protein of unknown function, DUF258 AM488_12425 PF00929 Exonuclease AM488_12430 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_12455 PF08331 AM488_12455 AM488_12455 PF13484 AM488_12455 AM488_12460 PF01256 Carbohydrate kinase AM488_12460 PF03853 YjeF-related protein N-terminus AM488_12465 PF02367 Uncharacterised P-loop hydrolase UPF0079 AM488_12470 PF01520 N-acetylmuramoyl-L-alanine amidase AM488_12475 PF01119 DNA mismatch repair protein, C-terminal domain AM488_12475 PF08676 MutL C terminal dimerisation domain AM488_12475 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_12480 PF01715 IPP transferase AM488_12485 PF17209 AM488_12485 AM488_12490 PF01926 50S ribosome-binding GTPase AM488_12490 PF13167 AM488_12490 AM488_12490 PF16360 AM488_12490 AM488_12495 PF01145 SPFH domain / Band 7 family AM488_12495 PF12221 AM488_12495 AM488_12500 PF01145 SPFH domain / Band 7 family AM488_12510 PF09838 AM488_12510 AM488_12515 PF00709 Adenylosuccinate synthetase AM488_12520 PF02082 Transcriptional regulator AM488_12525 PF00575 S1 RNA binding domain AM488_12525 PF00773 RNB domain AM488_12525 PF08206 Ribonuclease B OB domain AM488_12525 PF08461 Ribonuclease R winged-helix domain AM488_12530 PF00588 SpoU rRNA Methylase family AM488_12530 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM488_12535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM488_12535 PF02770 Acyl-CoA dehydrogenase, middle domain AM488_12540 PF07338 Protein of unknown function (DUF1471) AM488_12545 PF07338 Protein of unknown function (DUF1471) AM488_12550 PF00326 Prolyl oligopeptidase family AM488_12555 PF00455 AM488_12555 AM488_12555 PF08220 DeoR-like helix-turn-helix domain AM488_12560 PF13483 Beta-lactamase superfamily domain AM488_12565 PF03611 AM488_12565 AM488_12570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_12575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_12580 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM488_12585 PF01261 Xylose isomerase-like TIM barrel AM488_12590 PF00596 Class II Aldolase and Adducin N-terminal domain AM488_12595 PF07690 Major Facilitator Superfamily AM488_12600 PF07338 Protein of unknown function (DUF1471) AM488_12605 PF01250 Ribosomal protein S6 AM488_12610 PF00436 Single-strand binding protein family AM488_12615 PF01084 Ribosomal protein S18 AM488_12620 PF01281 Ribosomal protein L9, N-terminal domain AM488_12620 PF03948 Ribosomal protein L9, C-terminal domain AM488_12625 PF04225 Opacity-associated protein A LysM-like domain AM488_12625 PF08525 AM488_12625 AM488_12630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM488_12630 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM488_12635 PF00324 Amino acid permease AM488_12640 PF01814 Hemerythrin HHE cation binding domain AM488_12640 PF04405 AM488_12640 AM488_12645 PF00892 EamA-like transporter family AM488_12650 PF02311 AraC-like ligand binding domain AM488_12650 PF12833 Helix-turn-helix domain AM488_12655 PF05368 NmrA-like family AM488_12660 PF01638 HxlR-like helix-turn-helix AM488_12665 PF00149 Calcineurin-like phosphoesterase AM488_12665 PF02872 5'-nucleotidase, C-terminal domain AM488_12670 PF00459 Inositol monophosphatase family AM488_12675 PF09695 AM488_12675 AM488_12680 PF06526 Protein of unknown function (DUF1107) AM488_12690 PF00571 CBS domain AM488_12690 PF01595 AM488_12690 AM488_12690 PF03471 Transporter associated domain AM488_12695 PF01625 Peptide methionine sulfoxide reductase AM488_12700 PF01103 Surface antigen AM488_12700 PF07244 Surface antigen variable number repeat AM488_12700 PF17243 AM488_12700 AM488_12705 PF04357 AM488_12705 AM488_12710 PF06094 AIG2-like family AM488_12725 PF00719 Inorganic pyrophosphatase AM488_12730 PF13407 Periplasmic binding protein domain AM488_12735 PF00005 ABC transporter AM488_12740 PF02653 AM488_12740 AM488_12745 PF02653 AM488_12745 AM488_12750 PF00316 Fructose-1-6-bisphosphatase AM488_12755 PF01225 Mur ligase family, catalytic domain AM488_12755 PF02875 Mur ligase family, glutamate ligase domain AM488_12755 PF08245 Mur ligase middle domain AM488_12760 PF13673 Acetyltransferase (GNAT) domain AM488_12765 PF14486 Domain of unknown function (DUF4432) AM488_12770 PF04751 Protein of unknown function (DUF615) AM488_12775 PF01523 Putative modulator of DNA gyrase AM488_12780 PF07361 Cytochrome b562 AM488_12790 PF14272 AM488_12790 AM488_12795 PF14189 AM488_12795 AM488_12800 PF14188 AM488_12800 AM488_12805 PF14187 AM488_12805 AM488_12810 PF01979 Amidohydrolase family AM488_12815 PF03841 L-seryl-tRNA selenium transferase AM488_12820 PF07071 Protein of unknown function (DUF1341) AM488_12825 PF10282 Lactonase, 7-bladed beta-propeller AM488_12830 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_12830 PF00874 PRD domain AM488_12830 PF05043 Mga helix-turn-helix domain AM488_12830 PF08279 HTH domain AM488_12835 PF04221 RelB antitoxin AM488_12840 PF05016 Plasmid stabilisation system protein AM488_12845 PF13353 4Fe-4S single cluster domain AM488_12850 PF03477 ATP cone domain AM488_12850 PF13597 Anaerobic ribonucleoside-triphosphate reductase AM488_12855 PF01418 Helix-turn-helix domain, rpiR family AM488_12860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_12865 PF02056 Family 4 glycosyl hydrolase AM488_12865 PF11975 Family 4 glycosyl hydrolase C-terminal domain AM488_12870 PF02378 Phosphotransferase system, EIIC AM488_12875 PF00128 Alpha amylase, catalytic domain AM488_12875 PF11941 Domain of unknown function (DUF3459) AM488_12880 PF00367 phosphotransferase system, EIIB AM488_12880 PF02378 Phosphotransferase system, EIIC AM488_12885 PF00356 Bacterial regulatory proteins, lacI family AM488_12885 PF13377 Periplasmic binding protein-like domain AM488_12895 PF00122 E1-E2 ATPase AM488_12895 PF00689 Cation transporting ATPase, C-terminus AM488_12895 PF00690 Cation transporter/ATPase, N-terminus AM488_12895 PF00702 haloacid dehalogenase-like hydrolase AM488_12900 PF01042 Endoribonuclease L-PSP AM488_12905 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AM488_12905 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AM488_12910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM488_12910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM488_12915 PF08052 AM488_12915 AM488_12920 PF08052 AM488_12920 AM488_12925 PF04074 Domain of unknown function (DUF386) AM488_12930 PF01380 SIS domain AM488_12935 PF00294 pfkB family carbohydrate kinase AM488_12940 PF07969 Amidohydrolase family AM488_12945 PF03606 AM488_12945 AM488_12950 PF00392 Bacterial regulatory proteins, gntR family AM488_12950 PF07702 UTRA domain AM488_12955 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM488_12955 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM488_12960 PF06877 Regulator of ribonuclease activity B AM488_12965 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AM488_12970 PF00583 Acetyltransferase (GNAT) family AM488_12975 PF00133 tRNA synthetases class I (I, L, M and V) AM488_12975 PF08264 Anticodon-binding domain of tRNA AM488_12975 PF10458 Valyl tRNA synthetase tRNA binding arm AM488_12980 PF04364 DNA polymerase III chi subunit, HolC AM488_12985 PF00883 Cytosol aminopeptidase family, catalytic domain AM488_12985 PF02789 Cytosol aminopeptidase family, N-terminal domain AM488_12995 PF03739 AM488_12995 AM488_13000 PF03739 AM488_13000 AM488_13005 PF05872 AM488_13005 AM488_13010 PF01261 Xylose isomerase-like TIM barrel AM488_13015 PF00171 Aldehyde dehydrogenase family AM488_13020 PF04962 KduI/IolB family AM488_13060 PF01380 SIS domain AM488_13060 PF01418 Helix-turn-helix domain, rpiR family AM488_13065 PF00294 pfkB family carbohydrate kinase AM488_13065 PF09863 Uncharacterized protein conserved in bacteria (DUF2090) AM488_13070 PF00205 Thiamine pyrophosphate enzyme, central domain AM488_13070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM488_13070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM488_13075 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM488_13075 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM488_13080 PF01261 Xylose isomerase-like TIM barrel AM488_13085 PF01261 Xylose isomerase-like TIM barrel AM488_13090 PF13416 Bacterial extracellular solute-binding protein AM488_13095 PF00005 ABC transporter AM488_13095 PF08402 TOBE domain AM488_13100 PF00149 Calcineurin-like phosphoesterase AM488_13105 PF00528 Binding-protein-dependent transport system inner membrane component AM488_13110 PF00528 Binding-protein-dependent transport system inner membrane component AM488_13115 PF00107 Zinc-binding dehydrogenase AM488_13115 PF08240 Alcohol dehydrogenase GroES-like domain AM488_13120 PF00916 AM488_13120 AM488_13125 PF00484 Carbonic anhydrase AM488_13140 PF00589 Phage integrase family AM488_13140 PF13356 Domain of unknown function (DUF4102) AM488_13160 PF07455 Phage polarity suppression protein (Psu) AM488_13165 PF04606 AM488_13165 AM488_13185 PF10554 AM488_13185 AM488_13195 PF17345 AM488_13195 AM488_13200 PF03288 Poxvirus D5 protein-like AM488_13200 PF08273 Zinc-binding domain of primase-helicase AM488_13200 PF08706 AM488_13200 AM488_13200 PF13362 Toprim domain AM488_13215 PF05638 Protein of unknown function (DUF796) AM488_13235 PF10908 AM488_13235 AM488_13245 PF13391 AM488_13245 AM488_13250 PF01844 HNH endonuclease AM488_13255 PF04616 Glycosyl hydrolases family 43 AM488_13260 PF13347 MFS/sugar transport protein AM488_13270 PF02264 LamB porin AM488_13275 PF04463 AM488_13275 AM488_13275 PF08349 AM488_13275 AM488_13280 PF12915 AM488_13280 AM488_13290 PF11086 AM488_13290 AM488_13295 PF02353 Mycolic acid cyclopropane synthetase AM488_13300 PF07103 AM488_13300 AM488_13305 PF01593 Flavin containing amine oxidoreductase AM488_13310 PF00106 short chain dehydrogenase AM488_13315 PF12680 SnoaL-like domain AM488_13320 PF13411 MerR HTH family regulatory protein AM488_13325 PF08212 Lipocalin-like domain AM488_13330 PF06961 AM488_13330 AM488_13335 PF00873 AcrB/AcrD/AcrF family AM488_13340 PF16576 AM488_13340 AM488_13345 PF11604 Copper binding periplasmic protein CusF AM488_13350 PF02321 Outer membrane efflux protein AM488_13360 PF00072 Response regulator receiver domain AM488_13360 PF00486 Transcriptional regulatory protein, C terminal AM488_13365 PF00512 His Kinase A (phospho-acceptor) domain AM488_13365 PF00672 HAMP domain AM488_13365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_13370 PF08681 Protein of unknown function (DUF1778) AM488_13375 PF13508 Acetyltransferase (GNAT) domain AM488_13380 PF08007 Cupin superfamily protein AM488_13420 PF12698 ABC-2 family transporter protein AM488_13425 PF00005 ABC transporter AM488_13425 PF12698 ABC-2 family transporter protein AM488_13430 PF13437 HlyD family secretion protein AM488_13430 PF13533 Biotin-lipoyl like AM488_13435 PF00579 tRNA synthetases class I (W and Y) AM488_13440 PF13407 Periplasmic binding protein domain AM488_13445 PF00005 ABC transporter AM488_13450 PF02653 AM488_13450 AM488_13455 PF02653 AM488_13455 AM488_13460 PF02525 Flavodoxin-like fold AM488_13465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_13465 PF03466 LysR substrate binding domain AM488_13470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_13475 PF00155 Aminotransferase class I and II AM488_13475 PF00392 Bacterial regulatory proteins, gntR family AM488_13480 PF06568 AM488_13480 AM488_13485 PF01047 MarR family AM488_13490 PF13533 Biotin-lipoyl like AM488_13495 PF11168 AM488_13495 AM488_13500 PF11823 AM488_13500 AM488_13505 PF01869 BadF/BadG/BcrA/BcrD ATPase family AM488_13510 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component AM488_13515 PF09932 AM488_13515 AM488_13520 PF07690 Major Facilitator Superfamily AM488_13525 PF04286 AM488_13525 AM488_13530 PF01810 AM488_13530 AM488_13535 PF02311 AraC-like ligand binding domain AM488_13535 PF12833 Helix-turn-helix domain AM488_13545 PF04754 AM488_13545 AM488_13550 PF00171 Aldehyde dehydrogenase family AM488_13555 PF07437 AM488_13555 AM488_13560 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM488_13560 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM488_13565 PF04328 AM488_13565 AM488_13570 PF02554 AM488_13570 AM488_13570 PF13722 AM488_13570 AM488_13585 PF01613 Flavin reductase like domain AM488_13590 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal AM488_13590 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal AM488_13595 PF07883 Cupin domain AM488_13595 PF12833 Helix-turn-helix domain AM488_13600 PF07690 Major Facilitator Superfamily AM488_13605 PF03328 HpcH/HpaI aldolase/citrate lyase family AM488_13610 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM488_13615 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase AM488_13620 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AM488_13625 PF00171 Aldehyde dehydrogenase family AM488_13630 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM488_13635 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM488_13645 PF01047 MarR family AM488_13660 PF02615 Malate/L-lactate dehydrogenase AM488_13665 PF01168 Alanine racemase, N-terminal domain AM488_13665 PF14031 Putative serine dehydratase domain AM488_13675 PF07969 Amidohydrolase family AM488_13680 PF01042 Endoribonuclease L-PSP AM488_13685 PF00474 Sodium:solute symporter family AM488_13690 PF05035 2-keto-3-deoxy-galactonokinase AM488_13695 PF01081 KDPG and KHG aldolase AM488_13700 PF01380 SIS domain AM488_13700 PF01418 Helix-turn-helix domain, rpiR family AM488_13705 PF00583 Acetyltransferase (GNAT) family AM488_13710 PF00583 Acetyltransferase (GNAT) family AM488_13715 PF07690 Major Facilitator Superfamily AM488_13720 PF00392 Bacterial regulatory proteins, gntR family AM488_13720 PF07729 FCD domain AM488_13725 PF00107 Zinc-binding dehydrogenase AM488_13725 PF08240 Alcohol dehydrogenase GroES-like domain AM488_13730 PF01232 Mannitol dehydrogenase Rossmann domain AM488_13730 PF08125 Mannitol dehydrogenase C-terminal domain AM488_13735 PF00158 Sigma-54 interaction domain AM488_13735 PF00874 PRD domain AM488_13735 PF03610 PTS system fructose IIA component AM488_13740 PF03610 PTS system fructose IIA component AM488_13745 PF03830 PTS system sorbose subfamily IIB component AM488_13750 PF03609 AM488_13750 AM488_13755 PF03613 AM488_13755 AM488_13760 PF01380 SIS domain AM488_13765 PF01380 SIS domain AM488_13770 PF04754 AM488_13770 AM488_13775 PF00884 Sulfatase AM488_13780 PF10696 AM488_13780 AM488_13785 PF01695 IstB-like ATP binding protein AM488_13795 PF12821 AM488_13795 AM488_13800 PF06738 AM488_13800 AM488_13810 PF01494 FAD binding domain AM488_13815 PF12833 Helix-turn-helix domain AM488_13820 PF00196 Bacterial regulatory proteins, luxR family AM488_13825 PF00196 Bacterial regulatory proteins, luxR family AM488_13830 PF04073 Aminoacyl-tRNA editing domain AM488_13835 PF02378 Phosphotransferase system, EIIC AM488_13840 PF06276 Ferric iron reductase FhuF-like transporter AM488_13840 PF11575 AM488_13840 AM488_13845 PF00990 GGDEF domain AM488_13850 PF07256 AM488_13850 AM488_13870 PF05175 Methyltransferase small domain AM488_13870 PF08468 Methyltransferase small domain N-terminal AM488_13875 PF03603 DNA polymerase III psi subunit AM488_13880 PF00583 Acetyltransferase (GNAT) family AM488_13885 PF13419 Haloacid dehalogenase-like hydrolase AM488_13890 PF00009 Elongation factor Tu GTP binding domain AM488_13890 PF03144 Elongation factor Tu domain 2 AM488_13890 PF16658 AM488_13890 AM488_13895 PF04972 BON domain AM488_13900 PF07043 AM488_13900 AM488_13905 PF01734 Patatin-like phospholipase AM488_13910 PF01026 TatD related DNase AM488_13915 PF01773 Na+ dependent nucleoside transporter N-terminus AM488_13915 PF07662 Na+ dependent nucleoside transporter C-terminus AM488_13915 PF07670 Nucleoside recognition AM488_13920 PF01791 DeoC/LacD family aldolase AM488_13925 PF00591 Glycosyl transferase family, a/b domain AM488_13925 PF02885 Glycosyl transferase family, helical bundle domain AM488_13925 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AM488_13930 PF01676 Metalloenzyme superfamily AM488_13935 PF01048 Phosphorylase superfamily AM488_13940 PF03099 Biotin/lipoate A/B protein ligase family AM488_13940 PF10437 Bacterial lipoate protein ligase C-terminus AM488_13945 PF10144 AM488_13945 AM488_13955 PF12710 haloacid dehalogenase-like hydrolase AM488_13960 PF13481 AAA domain AM488_13960 PF13541 Subunit ChlI of Mg-chelatase AM488_13965 PF01381 Helix-turn-helix AM488_13965 PF13521 AAA domain AM488_13970 PF00005 ABC transporter AM488_13970 PF12848 ABC transporter AM488_13980 PF01464 Transglycosylase SLT domain AM488_13980 PF14718 Soluble lytic murein transglycosylase L domain AM488_13985 PF01371 Trp repressor protein AM488_13990 PF01931 Protein of unknown function DUF84 AM488_13995 PF00300 Histidine phosphatase superfamily (branch 1) AM488_14000 PF06445 GyrI-like small molecule binding domain AM488_14000 PF12833 Helix-turn-helix domain AM488_14005 PF05981 AM488_14005 AM488_14010 PF00072 Response regulator receiver domain AM488_14010 PF00486 Transcriptional regulatory protein, C terminal AM488_14015 PF00512 His Kinase A (phospho-acceptor) domain AM488_14015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_14015 PF14827 Sensory domain of two-component sensor kinase AM488_14020 PF06123 AM488_14020 AM488_14025 PF00072 Response regulator receiver domain AM488_14025 PF00486 Transcriptional regulatory protein, C terminal AM488_14040 PF00588 SpoU rRNA Methylase family AM488_14045 PF08254 AM488_14045 AM488_14050 PF00696 Amino acid kinase family AM488_14050 PF00742 Homoserine dehydrogenase AM488_14050 PF01842 ACT domain AM488_14050 PF03447 Homoserine dehydrogenase, NAD binding domain AM488_14050 PF13840 ACT domain AM488_14055 PF00288 GHMP kinases N terminal domain AM488_14055 PF08544 GHMP kinases C terminal AM488_14060 PF00291 Pyridoxal-phosphate dependent enzyme AM488_14060 PF14821 Threonine synthase N terminus AM488_14070 PF03883 AM488_14070 AM488_14075 PF01235 AM488_14075 AM488_14080 PF00923 Transaldolase AM488_14085 PF00994 Probable molybdopterin binding domain AM488_14090 PF07690 Major Facilitator Superfamily AM488_14095 PF01184 AM488_14095 AM488_14100 PF03981 AM488_14100 AM488_14100 PF13099 AM488_14100 AM488_14105 PF10807 AM488_14105 AM488_14110 PF00012 Hsp70 protein AM488_14115 PF00226 DnaJ domain AM488_14115 PF00684 DnaJ central domain AM488_14115 PF01556 DnaJ C terminal domain AM488_14120 PF06965 Na+/H+ antiporter 1 AM488_14125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_14125 PF03466 LysR substrate binding domain AM488_14130 PF01649 Ribosomal protein S20 AM488_14140 PF01687 Riboflavin kinase AM488_14140 PF06574 FAD synthetase AM488_14145 PF00133 tRNA synthetases class I (I, L, M and V) AM488_14145 PF06827 Zinc finger found in FPG and IleRS AM488_14145 PF08264 Anticodon-binding domain of tRNA AM488_14150 PF01252 AM488_14150 AM488_14155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM488_14160 PF02401 LytB protein AM488_14165 PF01156 Inosine-uridine preferring nucleoside hydrolase AM488_14170 PF05656 AM488_14170 AM488_14175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_14175 PF03466 LysR substrate binding domain AM488_14185 PF00072 Response regulator receiver domain AM488_14185 PF12431 AM488_14185 AM488_14190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_14190 PF17203 AM488_14190 AM488_14195 PF03977 AM488_14195 AM488_14200 PF00364 Biotin-requiring enzyme AM488_14200 PF00682 HMGL-like AM488_14200 PF02436 Conserved carboxylase domain AM488_14205 PF04277 AM488_14205 AM488_14210 PF03390 AM488_14210 AM488_14215 PF00583 Acetyltransferase (GNAT) family AM488_14215 PF08218 Citrate lyase ligase C-terminal domain AM488_14220 PF06857 AM488_14220 AM488_14225 PF03328 HpcH/HpaI aldolase/citrate lyase family AM488_14230 PF04223 Citrate lyase, alpha subunit (CitF) AM488_14235 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AM488_14240 PF01113 Dihydrodipicolinate reductase, N-terminus AM488_14240 PF05173 Dihydrodipicolinate reductase, C-terminus AM488_14250 PF00117 Glutamine amidotransferase class-I AM488_14250 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AM488_14255 PF02142 MGS-like domain AM488_14255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM488_14255 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM488_14260 PF06004 Bacterial protein of unknown function (DUF903) AM488_14265 PF02525 Flavodoxin-like fold AM488_14270 PF00999 Sodium/hydrogen exchanger family AM488_14270 PF02254 TrkA-N domain AM488_14280 PF00186 Dihydrofolate reductase AM488_14290 PF00149 Calcineurin-like phosphoesterase AM488_14295 PF04379 Protein of unknown function (DUF525) AM488_14300 PF00398 Ribosomal RNA adenine dimethylase AM488_14305 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AM488_14310 PF00639 PPIC-type PPIASE domain AM488_14310 PF09312 SurA N-terminal domain AM488_14310 PF13616 PPIC-type PPIASE domain AM488_14315 PF03968 OstA-like protein AM488_14315 PF04453 Organic solvent tolerance protein AM488_14320 PF00226 DnaJ domain AM488_14320 PF05099 Tellurite resistance protein TerB AM488_14325 PF00072 Response regulator receiver domain AM488_14325 PF12431 AM488_14325 AM488_14330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_14330 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AM488_14330 PF17203 AM488_14330 AM488_14335 PF03390 AM488_14335 AM488_14345 PF03802 AM488_14345 AM488_14350 PF00849 RNA pseudouridylate synthase AM488_14355 PF00176 SNF2 family N-terminal domain AM488_14355 PF00271 Helicase conserved C-terminal domain AM488_14355 PF12137 RNA polymerase recycling family C-terminal AM488_14360 PF00136 DNA polymerase family B AM488_14360 PF03104 DNA polymerase family B, exonuclease domain AM488_14365 PF00596 Class II Aldolase and Adducin N-terminal domain AM488_14370 PF02610 L-arabinose isomerase AM488_14370 PF11762 L-arabinose isomerase C-terminal domain AM488_14375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM488_14380 PF02311 AraC-like ligand binding domain AM488_14380 PF12833 Helix-turn-helix domain AM488_14385 PF09335 AM488_14385 AM488_14390 PF00005 ABC transporter AM488_14395 PF00528 Binding-protein-dependent transport system inner membrane component AM488_14400 PF13343 Bacterial extracellular solute-binding protein AM488_14405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_14405 PF12793 AM488_14405 AM488_14410 PF15894 AM488_14410 AM488_14415 PF07690 Major Facilitator Superfamily AM488_14420 PF07690 Major Facilitator Superfamily AM488_14425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_14425 PF03466 LysR substrate binding domain AM488_14430 PF01487 Type I 3-dehydroquinase AM488_14435 PF07690 Major Facilitator Superfamily AM488_14440 PF08501 Shikimate dehydrogenase substrate binding domain AM488_14445 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM488_14445 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_14450 PF00694 Aconitase C-terminal domain AM488_14455 PF00330 Aconitase family (aconitate hydratase) AM488_14460 PF00180 Isocitrate/isopropylmalate dehydrogenase AM488_14465 PF00682 HMGL-like AM488_14465 PF08502 LeuA allosteric (dimerisation) domain AM488_14470 PF08054 AM488_14470 AM488_14475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_14475 PF03466 LysR substrate binding domain AM488_14485 PF00205 Thiamine pyrophosphate enzyme, central domain AM488_14485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM488_14485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM488_14490 PF10369 Small subunit of acetolactate synthase AM488_14490 PF13710 ACT domain AM488_14495 PF00356 Bacterial regulatory proteins, lacI family AM488_14495 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM488_14505 PF02381 MraZ protein AM488_14510 PF01795 MraW methylase family AM488_14515 PF04999 AM488_14515 AM488_14520 PF00905 Penicillin binding protein transpeptidase domain AM488_14520 PF03717 Penicillin-binding Protein dimerisation domain AM488_14525 PF01225 Mur ligase family, catalytic domain AM488_14525 PF02875 Mur ligase family, glutamate ligase domain AM488_14525 PF08245 Mur ligase middle domain AM488_14530 PF01225 Mur ligase family, catalytic domain AM488_14530 PF02875 Mur ligase family, glutamate ligase domain AM488_14530 PF08245 Mur ligase middle domain AM488_14535 PF00953 Glycosyl transferase family 4 AM488_14535 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AM488_14540 PF02875 Mur ligase family, glutamate ligase domain AM488_14540 PF08245 Mur ligase middle domain AM488_14545 PF01098 AM488_14545 AM488_14550 PF03033 Glycosyltransferase family 28 N-terminal domain AM488_14550 PF04101 Glycosyltransferase family 28 C-terminal domain AM488_14555 PF01225 Mur ligase family, catalytic domain AM488_14555 PF02875 Mur ligase family, glutamate ligase domain AM488_14555 PF08245 Mur ligase middle domain AM488_14560 PF01820 D-ala D-ala ligase N-terminus AM488_14560 PF07478 D-ala D-ala ligase C-terminus AM488_14565 PF03799 Cell division protein FtsQ AM488_14565 PF08478 POTRA domain, FtsQ-type AM488_14570 PF02491 SHS2 domain inserted in FTSA AM488_14570 PF14450 Cell division protein FtsA AM488_14575 PF00091 Tubulin/FtsZ family, GTPase domain AM488_14575 PF12327 FtsZ family, C-terminal domain AM488_14580 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AM488_14585 PF06558 AM488_14585 AM488_14590 PF01043 SecA preprotein cross-linking domain AM488_14590 PF02810 SEC-C motif AM488_14590 PF07516 SecA Wing and Scaffold domain AM488_14590 PF07517 SecA DEAD-like domain AM488_14595 PF00293 NUDIX domain AM488_14600 PF03884 Domain of unknown function (DUF329) AM488_14605 PF07072 Protein of unknown function (DUF1342) AM488_14610 PF01121 Dephospho-CoA kinase AM488_14615 PF00478 IMP dehydrogenase / GMP reductase domain AM488_14620 PF00482 Type II secretion system (T2SS), protein F AM488_14625 PF00437 Type II/IV secretion system protein AM488_14625 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AM488_14630 PF07963 Prokaryotic N-terminal methylation motif AM488_14635 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AM488_14635 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AM488_14640 PF01510 N-acetylmuramoyl-L-alanine amidase AM488_14645 PF17113 AM488_14645 AM488_14650 PF04616 Glycosyl hydrolases family 43 AM488_14655 PF13347 MFS/sugar transport protein AM488_14660 PF00324 Amino acid permease AM488_14665 PF00392 Bacterial regulatory proteins, gntR family AM488_14665 PF07729 FCD domain AM488_14670 PF00456 Transketolase, thiamine diphosphate binding domain AM488_14675 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM488_14675 PF00364 Biotin-requiring enzyme AM488_14675 PF02817 e3 binding domain AM488_14680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM488_14680 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_14690 PF11453 AM488_14690 AM488_14695 PF11737 AM488_14695 AM488_14710 PF00330 Aconitase family (aconitate hydratase) AM488_14710 PF06434 Aconitate hydratase 2 N-terminus AM488_14710 PF11791 Aconitate B N-terminal domain AM488_14715 PF06062 AM488_14715 AM488_14720 PF02675 S-adenosylmethionine decarboxylase AM488_14725 PF01564 Spermine/spermidine synthase AM488_14725 PF17284 AM488_14725 AM488_14730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM488_14730 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM488_14750 PF09691 Bacterial chaperone lipoprotein (PulS_OutS) AM488_14755 PF00394 Multicopper oxidase AM488_14755 PF07731 Multicopper oxidase AM488_14755 PF07732 Multicopper oxidase AM488_14755 PF10518 TAT (twin-arginine translocation) pathway signal sequence AM488_14760 PF01011 PQQ enzyme repeat AM488_14765 PF00156 Phosphoribosyl transferase domain AM488_14770 PF00484 Carbonic anhydrase AM488_14775 PF00005 ABC transporter AM488_14780 PF01061 AM488_14780 AM488_14785 PF03610 PTS system fructose IIA component AM488_14790 PF01522 Polysaccharide deacetylase AM488_14795 PF02261 Aspartate decarboxylase AM488_14800 PF02569 Pantoate-beta-alanine ligase AM488_14805 PF02548 Ketopantoate hydroxymethyltransferase AM488_14810 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AM488_14815 PF01743 Poly A polymerase head domain AM488_14815 PF12626 Polymerase A arginine-rich C-terminus AM488_14815 PF12627 Probable RNA and SrmB- binding site of polymerase A AM488_14820 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM488_14825 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM488_14830 PF03749 Sugar fermentation stimulation protein AM488_14835 PF02834 LigT like Phosphoesterase AM488_14840 PF00270 DEAD/DEAH box helicase AM488_14840 PF00271 Helicase conserved C-terminal domain AM488_14840 PF04408 Helicase associated domain (HA2) AM488_14840 PF08482 AM488_14840 AM488_14845 PF01478 Type IV leader peptidase family AM488_14845 PF06750 AM488_14845 AM488_14850 PF01203 AM488_14850 AM488_14855 PF04612 Type II secretion system (T2SS), protein M AM488_14860 PF05134 Type II secretion system (T2SS), protein L AM488_14860 PF12693 GspL periplasmic domain AM488_14865 PF03934 Type II secretion system (T2SS), protein K AM488_14870 PF07963 Prokaryotic N-terminal methylation motif AM488_14870 PF11612 Type II secretion system (T2SS), protein J AM488_14875 PF02501 Type II secretion system (T2SS), protein I AM488_14875 PF07963 Prokaryotic N-terminal methylation motif AM488_14880 PF07963 Prokaryotic N-terminal methylation motif AM488_14885 PF07963 Prokaryotic N-terminal methylation motif AM488_14885 PF08334 Type II secretion system (T2SS), protein G AM488_14890 PF00482 Type II secretion system (T2SS), protein F AM488_14895 PF00437 Type II/IV secretion system protein AM488_14900 PF00263 AM488_14900 AM488_14900 PF03958 Bacterial type II/III secretion system short domain AM488_14905 PF11356 Type IV pilus biogenesis AM488_14910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AM488_14910 PF03714 Bacterial pullanase-associated domain AM488_14910 PF11852 Domain of unknown function (DUF3372) AM488_14915 PF16537 AM488_14915 AM488_14920 PF09691 Bacterial chaperone lipoprotein (PulS_OutS) AM488_14930 PF00905 Penicillin binding protein transpeptidase domain AM488_14930 PF00912 Transglycosylase AM488_14930 PF14812 AM488_14930 AM488_14930 PF14814 Bifunctional transglycosylase second domain AM488_14935 PF00593 TonB dependent receptor AM488_14935 PF07715 TonB-dependent Receptor Plug Domain AM488_14940 PF00005 ABC transporter AM488_14945 PF01497 Periplasmic binding protein AM488_14950 PF01032 FecCD transport family AM488_14955 PF00202 Aminotransferase class-III AM488_14960 PF00654 Voltage gated chloride channel AM488_14965 PF01521 Iron-sulphur cluster biosynthesis AM488_14970 PF03458 AM488_14970 AM488_14975 PF01497 Periplasmic binding protein AM488_14980 PF01048 Phosphorylase superfamily AM488_14985 PF01966 HD domain AM488_14985 PF13286 Phosphohydrolase-associated domain AM488_14990 PF00595 PDZ domain (Also known as DHR or GLGF) AM488_14990 PF13180 PDZ domain AM488_14990 PF13365 Trypsin-like peptidase domain AM488_14995 PF05651 AM488_14995 AM488_14995 PF13556 PucR C-terminal helix-turn-helix domain AM488_15000 PF11944 AM488_15000 AM488_15005 PF00132 Bacterial transferase hexapeptide (six repeats) AM488_15005 PF14602 Hexapeptide repeat of succinyl-transferase AM488_15005 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AM488_15010 PF01842 ACT domain AM488_15010 PF01909 Nucleotidyltransferase domain AM488_15010 PF01966 HD domain AM488_15010 PF08335 GlnD PII-uridylyltransferase AM488_15015 PF00557 Metallopeptidase family M24 AM488_15020 PF00318 Ribosomal protein S2 AM488_15025 PF00889 Elongation factor TS AM488_15030 PF00696 Amino acid kinase family AM488_15035 PF01765 Ribosome recycling factor AM488_15040 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AM488_15040 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AM488_15040 PF13288 DXP reductoisomerase C-terminal domain AM488_15050 PF01255 Putative undecaprenyl diphosphate synthase AM488_15055 PF01148 Cytidylyltransferase family AM488_15060 PF02163 Peptidase family M50 AM488_15060 PF13180 PDZ domain AM488_15065 PF01103 Surface antigen AM488_15065 PF07244 Surface antigen variable number repeat AM488_15070 PF03938 Outer membrane protein (OmpH-like) AM488_15075 PF00132 Bacterial transferase hexapeptide (six repeats) AM488_15075 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AM488_15075 PF14602 Hexapeptide repeat of succinyl-transferase AM488_15080 PF07977 FabA-like domain AM488_15085 PF00132 Bacterial transferase hexapeptide (six repeats) AM488_15085 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AM488_15090 PF02684 AM488_15090 AM488_15095 PF01351 Ribonuclease HII AM488_15100 PF01336 OB-fold nucleic acid binding domain AM488_15100 PF02811 PHP domain AM488_15100 PF07733 Bacterial DNA polymerase III alpha subunit AM488_15100 PF14579 Helix-hairpin-helix motif AM488_15105 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AM488_15110 PF01276 Orn/Lys/Arg decarboxylase, major domain AM488_15110 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AM488_15110 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AM488_15115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_15120 PF01171 PP-loop family AM488_15120 PF09179 TilS substrate binding domain AM488_15120 PF11734 TilS substrate C-terminal domain AM488_15125 PF07073 Modulator of Rho-dependent transcription termination (ROF) AM488_15130 PF06786 AM488_15130 AM488_15135 PF07152 YaeQ protein AM488_15140 PF00472 RF-1 domain AM488_15145 PF04170 NlpE N-terminal domain AM488_15145 PF17185 AM488_15145 AM488_15150 PF05708 Orthopoxvirus protein of unknown function (DUF830) AM488_15155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM488_15155 PF03129 Anticodon binding domain AM488_15155 PF04073 Aminoacyl-tRNA editing domain AM488_15160 PF01980 Uncharacterised protein family UPF0066 AM488_15165 PF16358 AM488_15165 AM488_15170 PF03180 NLPA lipoprotein AM488_15175 PF00528 Binding-protein-dependent transport system inner membrane component AM488_15180 PF00005 ABC transporter AM488_15180 PF09383 NIL domain AM488_15185 PF13242 HAD-hyrolase-like AM488_15225 PF00248 Aldo/keto reductase family AM488_15230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_15230 PF03466 LysR substrate binding domain AM488_15235 PF07690 Major Facilitator Superfamily AM488_15240 PF03372 Endonuclease/Exonuclease/phosphatase family AM488_15245 PF08241 Methyltransferase domain AM488_15250 PF01464 Transglycosylase SLT domain AM488_15250 PF01476 LysM domain AM488_15255 PF00753 Metallo-beta-lactamase superfamily AM488_15255 PF16123 AM488_15255 AM488_15260 PF08241 Methyltransferase domain AM488_15265 PF00075 RNase H AM488_15270 PF00929 Exonuclease AM488_15285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_15285 PF03466 LysR substrate binding domain AM488_15290 PF01810 AM488_15290 AM488_15295 PF00795 Carbon-nitrogen hydrolase AM488_15300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM488_15300 PF02770 Acyl-CoA dehydrogenase, middle domain AM488_15300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM488_15300 PF09317 AM488_15300 AM488_15305 PF13580 SIS domain AM488_15310 PF13230 Glutamine amidotransferases class-II AM488_15315 PF03734 L,D-transpeptidase catalytic domain AM488_15325 PF05896 AM488_15325 AM488_15325 PF11973 AM488_15325 AM488_15330 PF03116 AM488_15330 AM488_15335 PF04205 FMN-binding domain AM488_15340 PF02508 AM488_15340 AM488_15345 PF02508 AM488_15345 AM488_15350 PF00111 2Fe-2S iron-sulfur cluster binding domain AM488_15350 PF00175 Oxidoreductase NAD-binding domain AM488_15350 PF00970 Oxidoreductase FAD-binding domain AM488_15355 PF04400 AM488_15355 AM488_15360 PF03009 Glycerophosphoryl diester phosphodiesterase family AM488_15365 PF00817 impB/mucB/samB family AM488_15365 PF11798 IMS family HHH motif AM488_15365 PF11799 impB/mucB/samB family C-terminal domain AM488_15370 PF13673 Acetyltransferase (GNAT) domain AM488_15375 PF01546 Peptidase family M20/M25/M40 AM488_15375 PF07687 Peptidase dimerisation domain AM488_15380 PF00156 Phosphoribosyl transferase domain AM488_15385 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) AM488_15390 PF07417 Transcriptional regulator Crl AM488_15395 PF00392 Bacterial regulatory proteins, gntR family AM488_15395 PF07729 FCD domain AM488_15400 PF00324 Amino acid permease AM488_15405 PF00202 Aminotransferase class-III AM488_15410 PF00171 Aldehyde dehydrogenase family AM488_15415 PF01266 FAD dependent oxidoreductase AM488_15420 PF08943 CsiD AM488_15430 PF09857 AM488_15430 AM488_15435 PF13847 Methyltransferase domain AM488_15440 PF00043 Glutathione S-transferase, C-terminal domain AM488_15440 PF02798 Glutathione S-transferase, N-terminal domain AM488_15445 PF03611 AM488_15445 AM488_15450 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM488_15450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM488_15455 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_15460 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM488_15460 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM488_15465 PF04309 Glycerol-3-phosphate responsive antiterminator AM488_15470 PF01791 DeoC/LacD family aldolase AM488_15480 PF12674 AM488_15480 AM488_15485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM488_15485 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_15490 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM488_15490 PF00364 Biotin-requiring enzyme AM488_15490 PF02817 e3 binding domain AM488_15495 PF02779 Transketolase, pyrimidine binding domain AM488_15495 PF02780 Transketolase, C-terminal domain AM488_15500 PF00676 Dehydrogenase E1 component AM488_15505 PF00196 Bacterial regulatory proteins, luxR family AM488_15515 PF03288 Poxvirus D5 protein-like AM488_15515 PF08273 Zinc-binding domain of primase-helicase AM488_15515 PF08706 AM488_15515 AM488_15515 PF13362 Toprim domain AM488_15520 PF17345 AM488_15520 AM488_15530 PF10554 AM488_15530 AM488_15535 PF05930 Prophage CP4-57 regulatory protein (AlpA) AM488_15545 PF04606 AM488_15545 AM488_15550 PF07455 Phage polarity suppression protein (Psu) AM488_15560 PF13614 AAA domain AM488_15565 PF00589 Phage integrase family AM488_15565 PF13356 Domain of unknown function (DUF4102) AM488_15575 PF00171 Aldehyde dehydrogenase family AM488_15580 PF00696 Amino acid kinase family AM488_15580 PF01472 PUA domain AM488_15585 PF00267 Gram-negative porin AM488_15590 PF00877 NlpC/P60 family AM488_15600 PF00892 EamA-like transporter family AM488_15605 PF12710 haloacid dehalogenase-like hydrolase AM488_15625 PF00528 Binding-protein-dependent transport system inner membrane component AM488_15630 PF00528 Binding-protein-dependent transport system inner membrane component AM488_15635 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AM488_15640 PF00005 ABC transporter AM488_15645 PF00196 Bacterial regulatory proteins, luxR family AM488_15650 PF16449 AM488_15650 AM488_15660 PF15976 AM488_15660 AM488_15660 PF16967 AM488_15660 AM488_15670 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM488_15675 PF00528 Binding-protein-dependent transport system inner membrane component AM488_15680 PF00528 Binding-protein-dependent transport system inner membrane component AM488_15685 PF00005 ABC transporter AM488_15690 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_15700 PF00005 ABC transporter AM488_15705 PF00005 ABC transporter AM488_15710 PF02653 AM488_15710 AM488_15715 PF02653 AM488_15715 AM488_15720 PF13458 Periplasmic binding protein AM488_15725 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AM488_15730 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AM488_15735 PF13520 Amino acid permease AM488_15740 PF00324 Amino acid permease AM488_15745 PF02574 Homocysteine S-methyltransferase AM488_15750 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM488_15755 PF00005 ABC transporter AM488_15760 PF00528 Binding-protein-dependent transport system inner membrane component AM488_15765 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AM488_15770 PF01553 Acyltransferase AM488_15770 PF13444 Acetyltransferase (GNAT) domain AM488_15775 PF00490 Delta-aminolevulinic acid dehydratase AM488_15780 PF00144 Beta-lactamase AM488_15785 PF00857 Isochorismatase family AM488_15790 PF05992 AM488_15790 AM488_15795 PF07759 AM488_15795 AM488_15800 PF10954 AM488_15800 AM488_15805 PF10953 AM488_15805 AM488_15810 PF01820 D-ala D-ala ligase N-terminus AM488_15810 PF07478 D-ala D-ala ligase C-terminus AM488_15815 PF06904 AM488_15815 AM488_15820 PF07690 Major Facilitator Superfamily AM488_15825 PF10796 AM488_15825 AM488_15830 PF00245 Alkaline phosphatase AM488_15835 PF07769 AM488_15835 AM488_15840 PF03807 NADP oxidoreductase coenzyme F420-dependent AM488_15840 PF14748 Pyrroline-5-carboxylate reductase dimerisation AM488_15845 PF02639 AM488_15845 AM488_15850 PF09849 AM488_15850 AM488_15855 PF01202 Shikimate kinase AM488_15860 PF16362 AM488_15860 AM488_15865 PF07302 AM488_15865 AM488_15870 PF06865 Protein of unknown function (DUF1255) AM488_15875 PF04381 Putative exonuclease, RdgC AM488_15880 PF00480 ROK family AM488_15885 PF13555 P-loop containing region of AAA domain AM488_15885 PF13558 Putative exonuclease SbcCD, C subunit AM488_15890 PF00149 Calcineurin-like phosphoesterase AM488_15890 PF12320 Type 5 capsule protein repressor C-terminal domain AM488_15895 PF00072 Response regulator receiver domain AM488_15895 PF00486 Transcriptional regulatory protein, C terminal AM488_15900 PF00512 His Kinase A (phospho-acceptor) domain AM488_15900 PF00989 PAS fold AM488_15900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_15900 PF11808 AM488_15900 AM488_15905 PF05525 AM488_15905 AM488_15910 PF00324 Amino acid permease AM488_15915 PF00128 Alpha amylase, catalytic domain AM488_15915 PF02903 Alpha amylase, N-terminal ig-like domain AM488_15920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_15920 PF03466 LysR substrate binding domain AM488_15925 PF00857 Isochorismatase family AM488_15930 PF03992 Antibiotic biosynthesis monooxygenase AM488_15935 PF07969 Amidohydrolase family AM488_15940 PF01116 Fructose-bisphosphate aldolase class-II AM488_15945 PF00294 pfkB family carbohydrate kinase AM488_15950 PF03611 AM488_15950 AM488_15955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_15960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_15965 PF00578 AhpC/TSA family AM488_15965 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM488_15970 PF04336 AM488_15970 AM488_15975 PF02547 Queuosine biosynthesis protein AM488_15980 PF01702 Queuine tRNA-ribosyltransferase AM488_15985 PF02699 Preprotein translocase subunit AM488_15990 PF02355 Protein export membrane protein AM488_15990 PF07549 SecD/SecF GG Motif AM488_15990 PF13721 SecD export protein N-terminal TM region AM488_15995 PF02355 Protein export membrane protein AM488_15995 PF07549 SecD/SecF GG Motif AM488_16000 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_16005 PF08279 HTH domain AM488_16005 PF13280 AM488_16005 AM488_16010 PF03502 Nucleoside-specific channel-forming protein, Tsx AM488_16015 PF11622 Protein of unknown function (DUF3251) AM488_16020 PF03477 ATP cone domain AM488_16025 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM488_16025 PF01872 RibD C-terminal domain AM488_16030 PF00885 6,7-dimethyl-8-ribityllumazine synthase AM488_16035 PF01029 NusB family AM488_16040 PF00586 AIR synthase related protein, N-terminal domain AM488_16040 PF02769 AIR synthase related protein, C-terminal domain AM488_16045 PF04608 Phosphatidylglycerophosphatase A AM488_16050 PF00248 Aldo/keto reductase family AM488_16055 PF02779 Transketolase, pyrimidine binding domain AM488_16055 PF02780 Transketolase, C-terminal domain AM488_16055 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AM488_16060 PF00348 Polyprenyl synthetase AM488_16065 PF02609 Exonuclease VII small subunit AM488_16070 PF02568 Thiamine biosynthesis protein (ThiI) AM488_16070 PF02926 THUMP domain AM488_16075 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AM488_16080 PF01965 DJ-1/PfpI family AM488_16085 PF02558 Ketopantoate reductase PanE/ApbA AM488_16085 PF08546 Ketopantoate reductase PanE/ApbA C terminal AM488_16090 PF04461 Protein of unknown function (DUF520) AM488_16095 PF07690 Major Facilitator Superfamily AM488_16100 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM488_16100 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM488_16105 PF07690 Major Facilitator Superfamily AM488_16110 PF01261 Xylose isomerase-like TIM barrel AM488_16115 PF00890 FAD binding domain AM488_16120 PF07978 NIPSNAP AM488_16125 PF00890 FAD binding domain AM488_16130 PF08501 Shikimate dehydrogenase substrate binding domain AM488_16135 PF01614 Bacterial transcriptional regulator AM488_16135 PF09339 IclR helix-turn-helix domain AM488_16145 PF01040 UbiA prenyltransferase family AM488_16150 PF03626 AM488_16150 AM488_16155 PF00510 Cytochrome c oxidase subunit III AM488_16160 PF00115 Cytochrome C and Quinol oxidase polypeptide I AM488_16165 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AM488_16165 PF06481 COX Aromatic Rich Motif AM488_16170 PF07690 Major Facilitator Superfamily AM488_16175 PF03923 AM488_16175 AM488_16175 PF08139 AM488_16175 AM488_16180 PF01722 BolA-like protein AM488_16195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM488_16195 PF05697 Bacterial trigger factor protein (TF) AM488_16195 PF05698 Bacterial trigger factor protein (TF) C-terminus AM488_16200 PF00574 Clp protease AM488_16205 PF06689 ClpX C4-type zinc finger AM488_16205 PF07724 AAA domain (Cdc48 subfamily) AM488_16205 PF10431 C-terminal, D2-small domain, of ClpB protein AM488_16210 PF00004 ATPase family associated with various cellular activities (AAA) AM488_16210 PF02190 ATP-dependent protease La (LON) domain AM488_16210 PF05362 Lon protease (S16) C-terminal proteolytic domain AM488_16215 PF00216 Bacterial DNA-binding protein AM488_16220 PF13145 PPIC-type PPIASE domain AM488_16220 PF13624 SurA N-terminal domain AM488_16225 PF12836 Helix-hairpin-helix motif AM488_16230 PF03061 Thioesterase superfamily AM488_16235 PF06508 Queuosine biosynthesis protein QueC AM488_16240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_16240 PF12793 AM488_16240 AM488_16245 PF08282 haloacid dehalogenase-like hydrolase AM488_16250 PF00291 Pyridoxal-phosphate dependent enzyme AM488_16255 PF01037 AsnC family AM488_16255 PF13412 Winged helix-turn-helix DNA-binding AM488_16260 PF00005 ABC transporter AM488_16260 PF00664 ABC transporter transmembrane region AM488_16265 PF00005 ABC transporter AM488_16265 PF00664 ABC transporter transmembrane region AM488_16270 PF00543 Nitrogen regulatory protein P-II AM488_16275 PF00909 Ammonium Transporter Family AM488_16280 PF13622 Thioesterase-like superfamily AM488_16285 PF09619 Type III secretion system lipoprotein chaperone (YscW) AM488_16290 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM488_16315 PF00155 Aminotransferase class I and II AM488_16315 PF00392 Bacterial regulatory proteins, gntR family AM488_16325 PF03824 AM488_16325 AM488_16330 PF02583 Metal-sensitive transcriptional repressor AM488_16335 PF00563 EAL domain AM488_16335 PF12792 AM488_16335 AM488_16340 PF00005 ABC transporter AM488_16345 PF13416 Bacterial extracellular solute-binding protein AM488_16350 PF00528 Binding-protein-dependent transport system inner membrane component AM488_16355 PF00528 Binding-protein-dependent transport system inner membrane component AM488_16360 PF07745 Glycosyl hydrolase family 53 AM488_16365 PF02449 Beta-galactosidase AM488_16365 PF08532 Beta-galactosidase trimerisation domain AM488_16365 PF08533 Beta-galactosidase C-terminal domain AM488_16370 PF00367 phosphotransferase system, EIIB AM488_16375 PF02264 LamB porin AM488_16380 PF00356 Bacterial regulatory proteins, lacI family AM488_16380 PF13377 Periplasmic binding protein-like domain AM488_16385 PF01197 Ribosomal protein L31 AM488_16390 PF00444 Ribosomal protein L36 AM488_16395 PF13302 Acetyltransferase (GNAT) domain AM488_16400 PF00155 Aminotransferase class I and II AM488_16400 PF00392 Bacterial regulatory proteins, gntR family AM488_16405 PF10777 AM488_16405 AM488_16410 PF12464 Maltose acetyltransferase AM488_16410 PF14602 Hexapeptide repeat of succinyl-transferase AM488_16415 PF05321 Haemolysin expression modulating protein AM488_16420 PF10757 AM488_16420 AM488_16425 PF00873 AcrB/AcrD/AcrF family AM488_16430 PF00529 HlyD family secretion protein AM488_16430 PF16576 AM488_16430 AM488_16435 PF00440 Bacterial regulatory proteins, tetR family AM488_16435 PF08361 MAATS-type transcriptional repressor, C-terminal region AM488_16440 PF00924 Mechanosensitive ion channel AM488_16440 PF12794 AM488_16440 AM488_16440 PF12795 AM488_16440 AM488_16445 PF04754 AM488_16445 AM488_16450 PF10689 AM488_16450 AM488_16455 PF07445 Primosomal replication protein priB and priC AM488_16460 PF04304 AM488_16460 AM488_16470 PF00156 Phosphoribosyl transferase domain AM488_16475 PF12168 AM488_16475 AM488_16475 PF12169 DNA polymerase III subunits gamma and tau domain III AM488_16475 PF12170 DNA polymerase III tau subunit V interacting with alpha AM488_16475 PF13177 DNA polymerase III, delta subunit AM488_16480 PF02575 YbaB/EbfC DNA-binding family AM488_16485 PF02132 RecR protein AM488_16485 PF13662 Toprim domain AM488_16490 PF00183 Hsp90 protein AM488_16490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_16495 PF00406 Adenylate kinase AM488_16495 PF05191 Adenylate kinase, active site lid AM488_16500 PF00762 Ferrochelatase AM488_16505 PF00294 pfkB family carbohydrate kinase AM488_16510 PF00999 Sodium/hydrogen exchanger family AM488_16510 PF02254 TrkA-N domain AM488_16515 PF07690 Major Facilitator Superfamily AM488_16520 PF00149 Calcineurin-like phosphoesterase AM488_16520 PF02872 5'-nucleotidase, C-terminal domain AM488_16525 PF04073 Aminoacyl-tRNA editing domain AM488_16530 PF01963 AM488_16530 AM488_16535 PF00122 E1-E2 ATPase AM488_16535 PF00403 Heavy-metal-associated domain AM488_16535 PF00702 haloacid dehalogenase-like hydrolase AM488_16540 PF13411 MerR HTH family regulatory protein AM488_16545 PF01957 NfeD-like C-terminal, partner-binding AM488_16550 PF01145 SPFH domain / Band 7 family AM488_16555 PF00005 ABC transporter AM488_16560 PF03649 AM488_16560 AM488_16570 PF00085 Thioredoxin AM488_16570 PF14559 Tetratricopeptide repeat AM488_16570 PF14561 Tetratricopeptide repeat AM488_16575 PF00106 short chain dehydrogenase AM488_16580 PF13472 GDSL-like Lipase/Acylhydrolase family AM488_16585 PF00005 ABC transporter AM488_16605 PF02222 ATP-grasp domain AM488_16610 PF00731 AIR carboxylase AM488_16625 PF00149 Calcineurin-like phosphoesterase AM488_16630 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM488_16635 PF01406 tRNA synthetases class I (C) catalytic domain AM488_16635 PF09190 DALR domain AM488_16640 PF13275 S4 domain AM488_16645 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AM488_16645 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AM488_16670 PF00576 HIUase/Transthyretin family AM488_16685 PF00285 Citrate synthase AM488_16695 PF00196 Bacterial regulatory proteins, luxR family AM488_16700 PF16970 AM488_16700 AM488_16705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM488_16705 PF02753 Pili assembly chaperone PapD, C-terminal domain AM488_16710 PF00577 Outer membrane usher protein AM488_16710 PF13953 PapC C-terminal domain AM488_16710 PF13954 PapC N-terminal domain AM488_16715 PF00419 Fimbrial protein AM488_16720 PF13527 Acetyltransferase (GNAT) domain AM488_16725 PF03279 AM488_16725 AM488_16730 PF07338 Protein of unknown function (DUF1471) AM488_16735 PF00486 Transcriptional regulatory protein, C terminal AM488_16740 PF13520 Amino acid permease AM488_16745 PF01276 Orn/Lys/Arg decarboxylase, major domain AM488_16745 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AM488_16745 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AM488_16750 PF00854 POT family AM488_16755 PF00152 tRNA synthetases class II (D, K and N) AM488_16755 PF01336 OB-fold nucleic acid binding domain AM488_16765 PF01261 Xylose isomerase-like TIM barrel AM488_16770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM488_16770 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM488_16775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM488_16780 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM488_16780 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM488_16785 PF00356 Bacterial regulatory proteins, lacI family AM488_16785 PF13407 Periplasmic binding protein domain AM488_16790 PF13407 Periplasmic binding protein domain AM488_16795 PF00005 ABC transporter AM488_16800 PF02653 AM488_16800 AM488_16810 PF00356 Bacterial regulatory proteins, lacI family AM488_16810 PF13377 Periplasmic binding protein-like domain AM488_16815 PF00251 Glycosyl hydrolases family 32 N-terminal domain AM488_16815 PF08244 Glycosyl hydrolases family 32 C terminal AM488_16820 PF00367 phosphotransferase system, EIIB AM488_16820 PF02378 Phosphotransferase system, EIIC AM488_16825 PF02264 LamB porin AM488_16825 PF11471 AM488_16825 AM488_16830 PF00294 pfkB family carbohydrate kinase AM488_16835 PF15977 AM488_16835 AM488_16840 PF11742 AM488_16840 AM488_16845 PF13533 Biotin-lipoyl like AM488_16850 PF00005 ABC transporter AM488_16855 PF01032 FecCD transport family AM488_16860 PF01497 Periplasmic binding protein AM488_16870 PF11776 Domain of unknown function (DUF3315) AM488_16875 PF01546 Peptidase family M20/M25/M40 AM488_16875 PF07687 Peptidase dimerisation domain AM488_16880 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_16885 PF00248 Aldo/keto reductase family AM488_16895 PF10703 Molybdenum cofactor biosynthesis protein F AM488_16895 PF17409 AM488_16895 AM488_16900 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_16905 PF00884 Sulfatase AM488_16910 PF04055 Radical SAM superfamily AM488_16915 PF00196 Bacterial regulatory proteins, luxR family AM488_16920 PF07690 Major Facilitator Superfamily AM488_16925 PF00850 Histone deacetylase domain AM488_16930 PF11354 AM488_16930 AM488_16935 PF13520 Amino acid permease AM488_16940 PF05899 Protein of unknown function (DUF861) AM488_16945 PF01266 FAD dependent oxidoreductase AM488_16950 PF00171 Aldehyde dehydrogenase family AM488_16960 PF00593 TonB dependent receptor AM488_16960 PF07715 TonB-dependent Receptor Plug Domain AM488_16965 PF00324 Amino acid permease AM488_16970 PF03825 AM488_16970 AM488_16975 PF01261 Xylose isomerase-like TIM barrel AM488_16975 PF07582 AP endonuclease family 2 C terminus AM488_16980 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM488_16980 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM488_16990 PF00196 Bacterial regulatory proteins, luxR family AM488_17005 PF15976 AM488_17005 AM488_17005 PF16967 AM488_17005 AM488_17015 PF16449 AM488_17015 AM488_17020 PF00196 Bacterial regulatory proteins, luxR family AM488_17025 PF00293 NUDIX domain AM488_17030 PF00356 Bacterial regulatory proteins, lacI family AM488_17030 PF13377 Periplasmic binding protein-like domain AM488_17035 PF00924 Mechanosensitive ion channel AM488_17040 PF07690 Major Facilitator Superfamily AM488_17045 PF13560 Helix-turn-helix domain AM488_17060 PF00158 Sigma-54 interaction domain AM488_17060 PF00874 PRD domain AM488_17060 PF03610 PTS system fructose IIA component AM488_17065 PF01380 SIS domain AM488_17070 PF01380 SIS domain AM488_17075 PF03613 AM488_17075 AM488_17080 PF03609 AM488_17080 AM488_17085 PF03830 PTS system sorbose subfamily IIB component AM488_17090 PF03610 PTS system fructose IIA component AM488_17095 PF00881 Nitroreductase family AM488_17100 PF04237 YjbR AM488_17105 PF00440 Bacterial regulatory proteins, tetR family AM488_17110 PF12706 Beta-lactamase superfamily domain AM488_17115 PF12833 Helix-turn-helix domain AM488_17120 PF06643 AM488_17120 AM488_17130 PF00122 E1-E2 ATPase AM488_17130 PF00689 Cation transporting ATPase, C-terminus AM488_17130 PF00690 Cation transporter/ATPase, N-terminus AM488_17130 PF00702 haloacid dehalogenase-like hydrolase AM488_17135 PF13533 Biotin-lipoyl like AM488_17135 PF16576 AM488_17135 AM488_17140 PF00873 AcrB/AcrD/AcrF family AM488_17150 PF09992 Predicted periplasmic protein (DUF2233) AM488_17155 PF04107 Glutamate-cysteine ligase family 2(GCS2) AM488_17160 PF00892 EamA-like transporter family AM488_17165 PF00155 Aminotransferase class I and II AM488_17165 PF00392 Bacterial regulatory proteins, gntR family AM488_17170 PF00155 Aminotransferase class I and II AM488_17170 PF00392 Bacterial regulatory proteins, gntR family AM488_17175 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_17180 PF00528 Binding-protein-dependent transport system inner membrane component AM488_17185 PF00528 Binding-protein-dependent transport system inner membrane component AM488_17190 PF00005 ABC transporter AM488_17195 PF00106 short chain dehydrogenase AM488_17200 PF00202 Aminotransferase class-III AM488_17205 PF00005 ABC transporter AM488_17210 PF00005 ABC transporter AM488_17215 PF00528 Binding-protein-dependent transport system inner membrane component AM488_17215 PF12911 AM488_17215 AM488_17220 PF00528 Binding-protein-dependent transport system inner membrane component AM488_17225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_17230 PF13302 Acetyltransferase (GNAT) domain AM488_17235 PF00732 GMC oxidoreductase AM488_17235 PF05199 GMC oxidoreductase AM488_17240 PF00171 Aldehyde dehydrogenase family AM488_17245 PF00440 Bacterial regulatory proteins, tetR family AM488_17245 PF13977 Bacterial transcriptional repressor AM488_17255 PF02028 BCCT family transporter AM488_17260 PF08816 Inhibitor of vertebrate lysozyme (Ivy) AM488_17265 PF00924 Mechanosensitive ion channel AM488_17270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_17270 PF03466 LysR substrate binding domain AM488_17275 PF13417 Glutathione S-transferase, N-terminal domain AM488_17280 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_17285 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_17290 PF02653 AM488_17290 AM488_17295 PF00005 ABC transporter AM488_17300 PF10054 Predicted periplasmic lipoprotein (DUF2291) AM488_17305 PF13407 Periplasmic binding protein domain AM488_17310 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM488_17310 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM488_17315 PF04198 Putative sugar-binding domain AM488_17325 PF00456 Transketolase, thiamine diphosphate binding domain AM488_17330 PF02779 Transketolase, pyrimidine binding domain AM488_17330 PF02780 Transketolase, C-terminal domain AM488_17335 PF01648 4'-phosphopantetheinyl transferase superfamily AM488_17340 PF00593 TonB dependent receptor AM488_17340 PF07715 TonB-dependent Receptor Plug Domain AM488_17345 PF00756 Putative esterase AM488_17345 PF11806 Domain of unknown function (DUF3327) AM488_17350 PF03621 MbtH-like protein AM488_17355 PF00501 AMP-binding enzyme AM488_17355 PF00550 Phosphopantetheine attachment site AM488_17355 PF00668 Condensation domain AM488_17355 PF00975 Thioesterase domain AM488_17355 PF13193 AMP-binding enzyme C-terminal domain AM488_17360 PF00005 ABC transporter AM488_17365 PF01032 FecCD transport family AM488_17370 PF01032 FecCD transport family AM488_17375 PF05977 Transmembrane secretion effector AM488_17380 PF01497 Periplasmic binding protein AM488_17385 PF00425 chorismate binding enzyme AM488_17390 PF00501 AMP-binding enzyme AM488_17390 PF13193 AMP-binding enzyme C-terminal domain AM488_17395 PF00550 Phosphopantetheine attachment site AM488_17395 PF00857 Isochorismatase family AM488_17400 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_17405 PF03061 Thioesterase superfamily AM488_17410 PF02554 AM488_17410 AM488_17410 PF13722 AM488_17410 AM488_17415 PF04328 AM488_17415 AM488_17420 PF01381 Helix-turn-helix AM488_17425 PF05016 Plasmid stabilisation system protein AM488_17430 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_17435 PF00465 Iron-containing alcohol dehydrogenase AM488_17440 PF00005 ABC transporter AM488_17445 PF02653 AM488_17445 AM488_17450 PF13407 Periplasmic binding protein domain AM488_17455 PF08309 AM488_17455 AM488_17460 PF01636 Phosphotransferase enzyme family AM488_17465 PF01008 Initiation factor 2 subunit family AM488_17470 PF00328 Histidine phosphatase superfamily (branch 2) AM488_17475 PF07690 Major Facilitator Superfamily AM488_17480 PF00459 Inositol monophosphatase family AM488_17485 PF00356 Bacterial regulatory proteins, lacI family AM488_17485 PF13377 Periplasmic binding protein-like domain AM488_17490 PF07969 Amidohydrolase family AM488_17495 PF07905 AM488_17495 AM488_17495 PF13556 PucR C-terminal helix-turn-helix domain AM488_17500 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AM488_17505 PF00596 Class II Aldolase and Adducin N-terminal domain AM488_17510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM488_17510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM488_17515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM488_17515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM488_17520 PF00294 pfkB family carbohydrate kinase AM488_17525 PF02653 AM488_17525 AM488_17530 PF02653 AM488_17530 AM488_17535 PF00005 ABC transporter AM488_17540 PF13407 Periplasmic binding protein domain AM488_17545 PF00384 Molybdopterin oxidoreductase AM488_17545 PF01568 Molydopterin dinucleotide binding domain AM488_17550 PF03079 ARD/ARD' family AM488_17555 PF00702 haloacid dehalogenase-like hydrolase AM488_17560 PF00155 Aminotransferase class I and II AM488_17565 PF02195 ParB-like nuclease domain AM488_17570 PF01507 Phosphoadenosine phosphosulfate reductase family AM488_17570 PF11922 AM488_17570 AM488_17575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_17575 PF03466 LysR substrate binding domain AM488_17580 PF13098 Thioredoxin-like domain AM488_17585 PF00578 AhpC/TSA family AM488_17585 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM488_17590 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_17590 PF13192 Thioredoxin domain AM488_17595 PF00582 Universal stress protein family AM488_17600 PF01272 Transcription elongation factor, GreA/GreB, C-term AM488_17600 PF14760 Rnk N-terminus AM488_17605 PF00445 Ribonuclease T2 family AM488_17610 PF03606 AM488_17610 AM488_17620 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP AM488_17625 PF00313 'Cold-shock' DNA-binding domain AM488_17630 PF02537 AM488_17630 AM488_17635 PF00795 Carbon-nitrogen hydrolase AM488_17640 PF02416 mttA/Hcf106 family AM488_17645 PF04055 Radical SAM superfamily AM488_17645 PF16881 AM488_17645 AM488_17650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_17650 PF03466 LysR substrate binding domain AM488_17655 PF03099 Biotin/lipoate A/B protein ligase family AM488_17660 PF04359 Protein of unknown function (DUF493) AM488_17665 PF00768 D-alanyl-D-alanine carboxypeptidase AM488_17665 PF07943 Penicillin-binding protein 5, C-terminal domain AM488_17670 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AM488_17670 PF05036 Sporulation related domain AM488_17675 PF01098 AM488_17675 AM488_17680 PF00905 Penicillin binding protein transpeptidase domain AM488_17680 PF03717 Penicillin-binding Protein dimerisation domain AM488_17685 PF02590 Predicted SPOUT methyltransferase AM488_17690 PF02410 Oligomerisation domain AM488_17700 PF00300 Histidine phosphatase superfamily (branch 1) AM488_17705 PF01467 Cytidylyltransferase AM488_17710 PF06144 DNA polymerase III, delta subunit AM488_17710 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AM488_17715 PF04390 Lipopolysaccharide-assembly AM488_17720 PF00133 tRNA synthetases class I (I, L, M and V) AM488_17720 PF08264 Anticodon-binding domain of tRNA AM488_17720 PF13603 Leucyl-tRNA synthetase, Domain 2 AM488_17725 PF07295 AM488_17725 AM488_17730 PF05860 haemagglutination activity domain AM488_17735 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AM488_17735 PF08479 POTRA domain, ShlB-type AM488_17735 PF17287 AM488_17735 AM488_17740 PF00005 ABC transporter AM488_17745 PF00528 Binding-protein-dependent transport system inner membrane component AM488_17750 PF00528 Binding-protein-dependent transport system inner membrane component AM488_17755 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_17760 PF00795 Carbon-nitrogen hydrolase AM488_17765 PF00571 CBS domain AM488_17765 PF03471 Transporter associated domain AM488_17770 PF02130 Uncharacterized protein family UPF0054 AM488_17775 PF02562 PhoH-like protein AM488_17780 PF00919 Uncharacterized protein family UPF0004 AM488_17780 PF01938 TRAM domain AM488_17780 PF04055 Radical SAM superfamily AM488_17785 PF01494 FAD binding domain AM488_17830 PF00733 Asparagine synthase AM488_17830 PF13537 Glutamine amidotransferase domain AM488_17835 PF13242 HAD-hyrolase-like AM488_17835 PF13344 Haloacid dehalogenase-like hydrolase AM488_17840 PF00480 ROK family AM488_17840 PF01047 MarR family AM488_17845 PF01979 Amidohydrolase family AM488_17850 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AM488_17860 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AM488_17860 PF00367 phosphotransferase system, EIIB AM488_17860 PF02378 Phosphotransferase system, EIIC AM488_17865 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM488_17865 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AM488_17875 PF03573 outer membrane porin, OprD family AM488_17880 PF13982 AM488_17880 AM488_17890 PF01475 Ferric uptake regulator family AM488_17895 PF00258 Flavodoxin AM488_17900 PF01402 Ribbon-helix-helix protein, copG family AM488_17905 PF12697 Alpha/beta hydrolase family AM488_17910 PF03925 SeqA protein AM488_17910 PF17206 AM488_17910 AM488_17915 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM488_17915 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM488_17915 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM488_17915 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM488_17925 PF00072 Response regulator receiver domain AM488_17925 PF00486 Transcriptional regulatory protein, C terminal AM488_17930 PF00512 His Kinase A (phospho-acceptor) domain AM488_17930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_17930 PF02702 Osmosensitive K+ channel His kinase sensor domain AM488_17930 PF13492 GAF domain AM488_17930 PF13493 Domain of unknown function (DUF4118) AM488_17935 PF02669 AM488_17935 AM488_17940 PF00122 E1-E2 ATPase AM488_17940 PF00702 haloacid dehalogenase-like hydrolase AM488_17945 PF03814 AM488_17945 AM488_17955 PF10725 AM488_17955 AM488_17960 PF00875 DNA photolyase AM488_17960 PF03441 FAD binding domain of DNA photolyase AM488_17965 PF00854 POT family AM488_17970 PF01784 NIF3 (NGG1p interacting factor 3) AM488_17975 PF02682 Allophanate hydrolase subunit 1 AM488_17980 PF02626 Allophanate hydrolase subunit 2 AM488_17985 PF03746 LamB/YcsF family AM488_17990 PF06149 AM488_17990 AM488_17995 PF06166 AM488_17995 AM488_18000 PF01470 Pyroglutamyl peptidase AM488_18005 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AM488_18005 PF06827 Zinc finger found in FPG and IleRS AM488_18005 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AM488_18010 PF00285 Citrate synthase AM488_18025 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM488_18030 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM488_18035 PF00890 FAD binding domain AM488_18035 PF02910 Fumarate reductase flavoprotein C-term AM488_18040 PF13085 2Fe-2S iron-sulfur cluster binding domain AM488_18040 PF13534 4Fe-4S dicluster domain AM488_18045 PF00676 Dehydrogenase E1 component AM488_18045 PF02779 Transketolase, pyrimidine binding domain AM488_18045 PF16078 AM488_18045 AM488_18045 PF16870 AM488_18045 AM488_18050 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM488_18050 PF00364 Biotin-requiring enzyme AM488_18050 PF02817 e3 binding domain AM488_18060 PF00549 CoA-ligase AM488_18060 PF08442 ATP-grasp domain AM488_18065 PF00549 CoA-ligase AM488_18065 PF02629 CoA binding domain AM488_18075 PF01654 AM488_18075 AM488_18080 PF02322 AM488_18080 AM488_18085 PF08173 AM488_18085 AM488_18090 PF09600 AM488_18090 AM488_18095 PF03061 Thioesterase superfamily AM488_18100 PF01618 AM488_18100 AM488_18105 PF02472 Biopolymer transport protein ExbD/TolR AM488_18110 PF06519 TolA C-terminal AM488_18115 PF04052 TolB amino-terminal domain AM488_18115 PF07676 WD40-like Beta Propeller Repeat AM488_18120 PF00691 OmpA family AM488_18125 PF13174 Tetratricopeptide repeat AM488_18125 PF13432 Tetratricopeptide repeat AM488_18125 PF16331 AM488_18125 AM488_18170 PF02445 Quinolinate synthetase A protein AM488_18175 PF04973 AM488_18175 AM488_18180 PF01545 Cation efflux family AM488_18185 PF13985 AM488_18185 AM488_18190 PF00793 DAHP synthetase I family AM488_18195 PF00300 Histidine phosphatase superfamily (branch 1) AM488_18200 PF01263 Aldose 1-epimerase AM488_18205 PF00288 GHMP kinases N terminal domain AM488_18205 PF08544 GHMP kinases C terminal AM488_18205 PF10509 Galactokinase galactose-binding signature AM488_18210 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AM488_18210 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AM488_18215 PF16363 AM488_18215 AM488_18220 PF00005 ABC transporter AM488_18225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_18225 PF03459 TOBE domain AM488_18230 PF10766 Protein of unknown function (DUF2592) AM488_18235 PF13531 Bacterial extracellular solute-binding protein AM488_18240 PF00528 Binding-protein-dependent transport system inner membrane component AM488_18245 PF00005 ABC transporter AM488_18245 PF03459 TOBE domain AM488_18250 PF08282 haloacid dehalogenase-like hydrolase AM488_18255 PF10282 Lactonase, 7-bladed beta-propeller AM488_18260 PF10798 Biofilm development protein YmgB/AriR AM488_18275 PF00563 EAL domain AM488_18275 PF04940 Sensors of blue-light using FAD AM488_18280 PF13411 MerR HTH family regulatory protein AM488_18285 PF00196 Bacterial regulatory proteins, luxR family AM488_18290 PF10798 Biofilm development protein YmgB/AriR AM488_18300 PF01757 AM488_18300 AM488_18310 PF01095 Pectinesterase AM488_18315 PF01979 Amidohydrolase family AM488_18320 PF00491 Arginase family AM488_18325 PF00392 Bacterial regulatory proteins, gntR family AM488_18325 PF07702 UTRA domain AM488_18330 PF01175 Urocanase AM488_18330 PF17391 AM488_18330 AM488_18330 PF17392 AM488_18330 AM488_18335 PF00221 Aromatic amino acid lyase AM488_18340 PF00324 Amino acid permease AM488_18345 PF01161 Phosphatidylethanolamine-binding protein AM488_18350 PF00202 Aminotransferase class-III AM488_18355 PF04055 Radical SAM superfamily AM488_18355 PF06968 Biotin and Thiamin Synthesis associated domain AM488_18360 PF00155 Aminotransferase class I and II AM488_18365 PF08241 Methyltransferase domain AM488_18370 PF13500 AAA domain AM488_18375 PF00005 ABC transporter AM488_18390 PF00271 Helicase conserved C-terminal domain AM488_18390 PF02151 UvrB/uvrC motif AM488_18390 PF04851 Type III restriction enzyme, res subunit AM488_18390 PF12344 Ultra-violet resistance protein B AM488_18400 PF00512 His Kinase A (phospho-acceptor) domain AM488_18400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_18405 PF00072 Response regulator receiver domain AM488_18405 PF00486 Transcriptional regulatory protein, C terminal AM488_18410 PF00884 Sulfatase AM488_18410 PF08019 AM488_18410 AM488_18415 PF01933 Uncharacterised protein family UPF0052 AM488_18425 PF04055 Radical SAM superfamily AM488_18425 PF06463 Molybdenum Cofactor Synthesis C AM488_18425 PF13353 4Fe-4S single cluster domain AM488_18430 PF00994 Probable molybdopterin binding domain AM488_18435 PF01967 MoaC family AM488_18440 PF02597 ThiS family AM488_18445 PF02391 MoaE protein AM488_18450 PF01027 Inhibitor of apoptosis-promoting Bax1 AM488_18465 PF03706 AM488_18465 AM488_18470 PF13091 PLD-like domain AM488_18475 PF03372 Endonuclease/Exonuclease/phosphatase family AM488_18480 PF11076 AM488_18480 AM488_18490 PF12698 ABC-2 family transporter protein AM488_18495 PF12698 ABC-2 family transporter protein AM488_18500 PF00005 ABC transporter AM488_18505 PF16576 AM488_18505 AM488_18510 PF00440 Bacterial regulatory proteins, tetR family AM488_18510 PF09209 Domain of unknown function (DUF1956) AM488_18515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_18515 PF03466 LysR substrate binding domain AM488_18520 PF07690 Major Facilitator Superfamily AM488_18525 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_18530 PF00456 Transketolase, thiamine diphosphate binding domain AM488_18535 PF02779 Transketolase, pyrimidine binding domain AM488_18535 PF02780 Transketolase, C-terminal domain AM488_18540 PF00270 DEAD/DEAH box helicase AM488_18540 PF00271 Helicase conserved C-terminal domain AM488_18545 PF00270 DEAD/DEAH box helicase AM488_18545 PF06733 DEAD_2 AM488_18545 PF13307 Helicase C-terminal domain AM488_18550 PF02885 Glycosyl transferase family, helical bundle domain AM488_18555 PF07338 Protein of unknown function (DUF1471) AM488_18560 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM488_18565 PF07338 Protein of unknown function (DUF1471) AM488_18570 PF01613 Flavin reductase like domain AM488_18575 PF05971 Protein of unknown function (DUF890) AM488_18580 PF00924 Mechanosensitive ion channel AM488_18585 PF00005 ABC transporter AM488_18590 PF00528 Binding-protein-dependent transport system inner membrane component AM488_18595 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_18600 PF00210 Ferritin-like domain AM488_18605 PF00892 EamA-like transporter family AM488_18610 PF13505 Outer membrane protein beta-barrel domain AM488_18615 PF00884 Sulfatase AM488_18625 PF01325 Iron dependent repressor, N-terminal DNA binding domain AM488_18625 PF02742 Iron dependent repressor, metal binding and dimerisation domain AM488_18630 PF03600 Citrate transporter AM488_18635 PF00232 Glycosyl hydrolase family 1 AM488_18640 PF00392 Bacterial regulatory proteins, gntR family AM488_18640 PF07702 UTRA domain AM488_18645 PF03734 L,D-transpeptidase catalytic domain AM488_18650 PF13350 Tyrosine phosphatase family AM488_18655 PF00005 ABC transporter AM488_18655 PF12848 ABC transporter AM488_18665 PF01055 Glycosyl hydrolases family 31 AM488_18665 PF13802 Galactose mutarotase-like AM488_18665 PF17137 AM488_18665 AM488_18670 PF07690 Major Facilitator Superfamily AM488_18675 PF00356 Bacterial regulatory proteins, lacI family AM488_18675 PF13377 Periplasmic binding protein-like domain AM488_18680 PF07350 Protein of unknown function (DUF1479) AM488_18685 PF08282 haloacid dehalogenase-like hydrolase AM488_18690 PF01228 Glycine radical AM488_18690 PF02901 Pyruvate formate lyase AM488_18695 PF04055 Radical SAM superfamily AM488_18695 PF13353 4Fe-4S single cluster domain AM488_18700 PF00899 ThiF family AM488_18705 PF00994 Probable molybdopterin binding domain AM488_18705 PF03453 MoeA N-terminal region (domain I and II) AM488_18705 PF03454 MoeA C-terminal region (domain IV) AM488_18710 PF01112 Asparaginase AM488_18715 PF00005 ABC transporter AM488_18715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM488_18720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_18725 PF00528 Binding-protein-dependent transport system inner membrane component AM488_18730 PF00528 Binding-protein-dependent transport system inner membrane component AM488_18730 PF12911 AM488_18730 AM488_18740 PF00919 Uncharacterized protein family UPF0004 AM488_18740 PF01938 TRAM domain AM488_18740 PF04055 Radical SAM superfamily AM488_18745 PF01306 LacY proton/sugar symporter AM488_18750 PF10799 AM488_18750 AM488_18755 PF07995 Glucose / Sorbosone dehydrogenase AM488_18760 PF13410 Glutathione S-transferase, C-terminal domain AM488_18760 PF13417 Glutathione S-transferase, N-terminal domain AM488_18765 PF00768 D-alanyl-D-alanine carboxypeptidase AM488_18765 PF07943 Penicillin-binding protein 5, C-terminal domain AM488_18770 PF00455 AM488_18770 AM488_18770 PF08220 DeoR-like helix-turn-helix domain AM488_18775 PF01569 PAP2 superfamily AM488_18785 PF07690 Major Facilitator Superfamily AM488_18790 PF08282 haloacid dehalogenase-like hydrolase AM488_18795 PF07690 Major Facilitator Superfamily AM488_18800 PF00440 Bacterial regulatory proteins, tetR family AM488_18805 PF00589 Phage integrase family AM488_18815 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM488_18825 PF07022 Bacteriophage CI repressor helix-turn-helix domain AM488_18825 PF16452 AM488_18825 AM488_18835 PF06892 AM488_18835 AM488_18840 PF10893 AM488_18840 AM488_18845 PF17282 AM488_18845 AM488_18850 PF10809 AM488_18850 AM488_18855 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM488_18860 PF02086 D12 class N6 adenine-specific DNA methyltransferase AM488_18865 PF05840 AM488_18865 AM488_18875 PF06183 DinI-like family AM488_18885 PF10592 AM488_18885 AM488_18890 PF04860 Phage portal protein AM488_18895 PF03237 Terminase-like family AM488_18895 PF06056 Putative ATPase subunit of terminase (gpP-like) AM488_18895 PF17289 AM488_18895 AM488_18900 PF05929 AM488_18900 AM488_18905 PF05125 AM488_18905 AM488_18910 PF05944 AM488_18910 AM488_18915 PF05926 AM488_18915 AM488_18920 PF05489 Phage Tail Protein X AM488_18925 PF16080 AM488_18925 AM488_18930 PF00959 Phage lysozyme AM488_18945 PF06891 AM488_18945 AM488_18950 PF05069 AM488_18950 AM488_18960 PF04717 Phage-related baseplate assembly protein AM488_18965 PF04965 Gene 25-like lysozyme AM488_18970 PF04865 AM488_18970 AM488_18975 PF09684 AM488_18975 AM488_18985 PF13385 Concanavalin A-like lectin/glucanases superfamily AM488_18995 PF12571 AM488_18995 AM488_19000 PF04984 Phage tail sheath protein AM488_19000 PF17482 AM488_19000 AM488_19005 PF04985 AM488_19005 AM488_19010 PF10109 AM488_19010 AM488_19015 PF06528 AM488_19015 AM488_19020 PF10145 AM488_19020 AM488_19025 PF06995 AM488_19025 AM488_19030 PF05954 Phage late control gene D protein (GPD) AM488_19035 PF04606 AM488_19035 AM488_19040 PF02080 TrkA-C domain AM488_19040 PF06826 AM488_19040 AM488_19045 PF11045 AM488_19045 AM488_19050 PF00462 Glutaredoxin AM488_19055 PF07214 AM488_19055 AM488_19065 PF08443 RimK-like ATP-grasp domain AM488_19070 PF10722 Putative bacterial sensory transduction regulator AM488_19075 PF13416 Bacterial extracellular solute-binding protein AM488_19080 PF00005 ABC transporter AM488_19080 PF08402 TOBE domain AM488_19085 PF00528 Binding-protein-dependent transport system inner membrane component AM488_19090 PF00528 Binding-protein-dependent transport system inner membrane component AM488_19095 PF10767 AM488_19095 AM488_19100 PF05958 tRNA (Uracil-5-)-methyltransferase AM488_19105 PF00072 Response regulator receiver domain AM488_19105 PF00486 Transcriptional regulatory protein, C terminal AM488_19110 PF00512 His Kinase A (phospho-acceptor) domain AM488_19110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_19115 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_19120 PF00528 Binding-protein-dependent transport system inner membrane component AM488_19125 PF00528 Binding-protein-dependent transport system inner membrane component AM488_19130 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_19135 PF00005 ABC transporter AM488_19140 PF12883 Protein of unknown function (DUF3828) AM488_19150 PF00990 GGDEF domain AM488_19150 PF17178 AM488_19150 AM488_19155 PF01510 N-acetylmuramoyl-L-alanine amidase AM488_19160 PF01370 NAD dependent epimerase/dehydratase family AM488_19165 PF11066 AM488_19165 AM488_19165 PF13460 NADH(P)-binding AM488_19170 PF01212 Beta-eliminating lyase AM488_19175 PF00205 Thiamine pyrophosphate enzyme, central domain AM488_19175 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM488_19175 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM488_19180 PF07681 AM488_19180 AM488_19190 PF00111 2Fe-2S iron-sulfur cluster binding domain AM488_19190 PF00175 Oxidoreductase NAD-binding domain AM488_19190 PF00970 Oxidoreductase FAD-binding domain AM488_19195 PF03063 Prismane/CO dehydrogenase family AM488_19200 PF03956 AM488_19200 AM488_19205 PF00230 Major intrinsic protein AM488_19210 PF11398 Protein of unknown function (DUF2813) AM488_19215 PF16576 AM488_19215 AM488_19220 PF00005 ABC transporter AM488_19220 PF02687 AM488_19220 AM488_19220 PF12704 MacB-like periplasmic core domain AM488_19230 PF00313 'Cold-shock' DNA-binding domain AM488_19235 PF02617 ATP-dependent Clp protease adaptor protein ClpS AM488_19240 PF00004 ATPase family associated with various cellular activities (AAA) AM488_19240 PF02861 Clp amino terminal domain AM488_19240 PF07724 AAA domain (Cdc48 subfamily) AM488_19240 PF10431 C-terminal, D2-small domain, of ClpB protein AM488_19245 PF01176 Translation initiation factor 1A / IF-1 AM488_19250 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AM488_19255 PF00005 ABC transporter AM488_19255 PF00664 ABC transporter transmembrane region AM488_19260 PF00005 ABC transporter AM488_19260 PF00664 ABC transporter transmembrane region AM488_19265 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_19270 PF01037 AsnC family AM488_19270 PF13412 Winged helix-turn-helix DNA-binding AM488_19275 PF01580 FtsK/SpoIIIE family AM488_19275 PF09397 Ftsk gamma domain AM488_19275 PF13491 AM488_19275 AM488_19280 PF03548 Outer membrane lipoprotein carrier protein LolA AM488_19285 PF00004 ATPase family associated with various cellular activities (AAA) AM488_19285 PF12002 MgsA AAA+ ATPase C terminal AM488_19285 PF16193 AM488_19285 AM488_19290 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM488_19290 PF02403 Seryl-tRNA synthetase N-terminal domain AM488_19295 PF00384 Molybdopterin oxidoreductase AM488_19295 PF01568 Molydopterin dinucleotide binding domain AM488_19295 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM488_19300 PF12800 4Fe-4S binding domain AM488_19300 PF13247 4Fe-4S dicluster domain AM488_19305 PF04976 AM488_19305 AM488_19315 PF07690 Major Facilitator Superfamily AM488_19320 PF04055 Radical SAM superfamily AM488_19320 PF13353 4Fe-4S single cluster domain AM488_19325 PF01228 Glycine radical AM488_19325 PF02901 Pyruvate formate lyase AM488_19330 PF01226 Formate/nitrite transporter AM488_19335 PF02624 YcaO-like family AM488_19340 PF04239 Protein of unknown function (DUF421) AM488_19345 PF00266 Aminotransferase class-V AM488_19350 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM488_19355 PF02224 Cytidylate kinase AM488_19360 PF00575 S1 RNA binding domain AM488_19365 PF00216 Bacterial DNA-binding protein AM488_19370 PF00753 Metallo-beta-lactamase superfamily AM488_19370 PF03772 AM488_19370 AM488_19375 PF00005 ABC transporter AM488_19375 PF00664 ABC transporter transmembrane region AM488_19380 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AM488_19385 PF06224 AM488_19385 AM488_19390 PF03966 Trm112p-like protein AM488_19395 PF02348 Cytidylyltransferase AM488_19400 PF01636 Phosphotransferase enzyme family AM488_19405 PF02698 DUF218 domain AM488_19410 PF13847 Methyltransferase domain AM488_19415 PF03882 KicB killing factor AM488_19415 PF17192 AM488_19415 AM488_19415 PF17193 AM488_19415 AM488_19420 PF04288 MukE-like family AM488_19425 PF04310 MukB N-terminal AM488_19425 PF13558 Putative exonuclease SbcCD, C subunit AM488_19425 PF16330 AM488_19425 AM488_19430 PF01471 Putative peptidoglycan binding domain AM488_19430 PF03734 L,D-transpeptidase catalytic domain AM488_19440 PF05951 AM488_19440 AM488_19445 PF00753 Metallo-beta-lactamase superfamily AM488_19450 PF00155 Aminotransferase class I and II AM488_19455 PF00267 Gram-negative porin AM488_19470 PF00152 tRNA synthetases class II (D, K and N) AM488_19470 PF01336 OB-fold nucleic acid binding domain AM488_19475 PF01037 AsnC family AM488_19475 PF13412 Winged helix-turn-helix DNA-binding AM488_19480 PF00291 Pyridoxal-phosphate dependent enzyme AM488_19485 PF03222 Tryptophan/tyrosine permease family AM488_19490 PF01546 Peptidase family M20/M25/M40 AM488_19495 PF01546 Peptidase family M20/M25/M40 AM488_19495 PF07687 Peptidase dimerisation domain AM488_19500 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AM488_19510 PF01433 Peptidase family M1 AM488_19510 PF11940 Domain of unknown function (DUF3458) AM488_19510 PF17432 AM488_19510 AM488_19515 PF00005 ABC transporter AM488_19520 PF00528 Binding-protein-dependent transport system inner membrane component AM488_19525 PF00296 Luciferase-like monooxygenase AM488_19530 PF09084 NMT1/THI5 like AM488_19535 PF03358 NADPH-dependent FMN reductase AM488_19540 PF01180 Dihydroorotate dehydrogenase AM488_19545 PF07126 AM488_19545 AM488_19550 PF00111 2Fe-2S iron-sulfur cluster binding domain AM488_19550 PF03473 MOSC domain AM488_19550 PF03476 MOSC N-terminal beta barrel domain AM488_19555 PF01170 Putative RNA methylase family UPF0020 AM488_19555 PF02926 THUMP domain AM488_19555 PF10672 S-adenosylmethionine-dependent methyltransferase AM488_19560 PF00005 ABC transporter AM488_19560 PF12848 ABC transporter AM488_19560 PF16326 AM488_19560 AM488_19565 PF04403 AM488_19565 AM488_19570 PF02470 AM488_19570 AM488_19575 PF03886 Protein of unknown function (DUF330) AM488_19585 PF04957 Ribosome modulation factor AM488_19590 PF07977 FabA-like domain AM488_19595 PF05362 Lon protease (S16) C-terminal proteolytic domain AM488_19595 PF13654 AAA domain AM488_19600 PF06303 Organiser of macrodomain of Terminus of chromosome AM488_19600 PF17414 AM488_19600 AM488_19605 PF00691 OmpA family AM488_19605 PF01389 OmpA-like transmembrane domain AM488_19610 PF03846 Cell division inhibitor SulA AM488_19620 PF04993 TfoX N-terminal domain AM488_19620 PF04994 TfoX C-terminal domain AM488_19625 PF12805 AM488_19625 AM488_19625 PF13515 AM488_19625 AM488_19630 PF03733 AM488_19630 AM488_19635 PF00580 UvrD/REP helicase N-terminal domain AM488_19635 PF12462 AM488_19635 AM488_19635 PF13361 UvrD-like helicase C-terminal domain AM488_19640 PF02142 MGS-like domain AM488_19645 PF13380 CoA binding domain AM488_19650 PF08755 Hemimethylated DNA-binding protein YccV like AM488_19655 PF01472 PUA domain AM488_19655 PF10672 S-adenosylmethionine-dependent methyltransferase AM488_19660 PF01161 Phosphatidylethanolamine-binding protein AM488_19665 PF12833 Helix-turn-helix domain AM488_19670 PF00708 Acylphosphatase AM488_19675 PF04358 DsrC like protein AM488_19680 PF01027 Inhibitor of apoptosis-promoting Bax1 AM488_19685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_19695 PF00563 EAL domain AM488_19710 PF00111 2Fe-2S iron-sulfur cluster binding domain AM488_19710 PF00970 Oxidoreductase FAD-binding domain AM488_19715 PF00171 Aldehyde dehydrogenase family AM488_19720 PF00355 Rieske [2Fe-2S] domain AM488_19720 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM488_19725 PF02028 BCCT family transporter AM488_19735 PF00180 Isocitrate/isopropylmalate dehydrogenase AM488_19740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_19740 PF03466 LysR substrate binding domain AM488_19745 PF01266 FAD dependent oxidoreductase AM488_19750 PF00171 Aldehyde dehydrogenase family AM488_19755 PF01381 Helix-turn-helix AM488_19755 PF07883 Cupin domain AM488_19760 PF07722 Peptidase C26 AM488_19765 PF00120 Glutamine synthetase, catalytic domain AM488_19775 PF00324 Amino acid permease AM488_19790 PF00106 short chain dehydrogenase AM488_19795 PF01638 HxlR-like helix-turn-helix AM488_19800 PF00328 Histidine phosphatase superfamily (branch 2) AM488_19805 PF13993 AM488_19805 AM488_19810 PF03358 NADPH-dependent FMN reductase AM488_19815 PF10685 AM488_19815 AM488_19820 PF00892 EamA-like transporter family AM488_19825 PF00860 Permease family AM488_19830 PF01613 Flavin reductase like domain AM488_19835 PF00881 Nitroreductase family AM488_19840 PF00561 alpha/beta hydrolase fold AM488_19845 PF01042 Endoribonuclease L-PSP AM488_19850 PF00857 Isochorismatase family AM488_19855 PF00296 Luciferase-like monooxygenase AM488_19860 PF00440 Bacterial regulatory proteins, tetR family AM488_19860 PF08362 YcdC-like protein, C-terminal region AM488_19865 PF07007 Protein of unknown function (DUF1311) AM488_19870 PF00171 Aldehyde dehydrogenase family AM488_19870 PF01619 Proline dehydrogenase AM488_19870 PF14850 DNA-binding domain of Proline dehydrogenase AM488_19880 PF00474 Sodium:solute symporter family AM488_19885 PF12098 AM488_19885 AM488_19890 PF01773 Na+ dependent nucleoside transporter N-terminus AM488_19890 PF07662 Na+ dependent nucleoside transporter C-terminus AM488_19890 PF07670 Nucleoside recognition AM488_19895 PF03239 AM488_19895 AM488_19900 PF09375 Imelysin AM488_19900 PF13473 Cupredoxin-like domain AM488_19905 PF04261 Dyp-type peroxidase family AM488_19910 PF02562 PhoH-like protein AM488_19915 PF01323 DSBA-like thioredoxin domain AM488_19930 PF00857 Isochorismatase family AM488_19935 PF02678 Pirin AM488_19935 PF05726 Pirin C-terminal cupin domain AM488_19940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_19940 PF03466 LysR substrate binding domain AM488_19965 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM488_19970 PF02811 PHP domain AM488_19975 PF02613 Nitrate reductase delta subunit AM488_19980 PF06496 AM488_19980 AM488_19985 PF01661 Macro domain AM488_19990 PF00440 Bacterial regulatory proteins, tetR family AM488_19995 PF01757 AM488_19995 AM488_20005 PF04349 Periplasmic glucan biosynthesis protein, MdoG AM488_20010 PF00535 Glycosyl transferase family 2 AM488_20015 PF07119 AM488_20015 AM488_20020 PF13984 AM488_20020 AM488_20025 PF07690 Major Facilitator Superfamily AM488_20035 PF03279 AM488_20035 AM488_20040 PF00581 Rhodanese-like domain AM488_20040 PF12368 AM488_20040 AM488_20045 PF10968 AM488_20045 AM488_20050 PF01266 FAD dependent oxidoreductase AM488_20055 PF13991 AM488_20055 AM488_20065 PF06183 DinI-like family AM488_20070 PF01979 Amidohydrolase family AM488_20075 PF07273 Protein of unknown function (DUF1439) AM488_20080 PF07690 Major Facilitator Superfamily AM488_20085 PF13302 Acetyltransferase (GNAT) domain AM488_20090 PF04337 Protein of unknown function, DUF480 AM488_20095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM488_20100 PF03023 AM488_20100 AM488_20105 PF07690 Major Facilitator Superfamily AM488_20110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_20110 PF03466 LysR substrate binding domain AM488_20115 PF00575 S1 RNA binding domain AM488_20115 PF10150 Ribonuclease E/G family AM488_20115 PF12111 Polyribonucleotide phosphorylase C terminal AM488_20120 PF10848 AM488_20120 AM488_20125 PF00849 RNA pseudouridylate synthase AM488_20125 PF01479 S4 domain AM488_20130 PF02545 Maf-like protein AM488_20135 PF02620 AM488_20135 AM488_20140 PF01783 Ribosomal L32p protein family AM488_20145 PF02504 Fatty acid synthesis protein AM488_20150 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AM488_20150 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AM488_20155 PF00698 Acyl transferase domain AM488_20160 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_20165 PF00550 Phosphopantetheine attachment site AM488_20170 PF00109 Beta-ketoacyl synthase, N-terminal domain AM488_20170 PF02801 Beta-ketoacyl synthase, C-terminal domain AM488_20175 PF01063 Aminotransferase class IV AM488_20180 PF02618 YceG-like family AM488_20185 PF02223 Thymidylate kinase AM488_20190 PF09115 DNA polymerase III, delta subunit, C terminal AM488_20190 PF13177 DNA polymerase III, delta subunit AM488_20195 PF01026 TatD related DNase AM488_20200 PF00367 phosphotransferase system, EIIB AM488_20200 PF02378 Phosphotransferase system, EIIC AM488_20205 PF01230 HIT domain AM488_20210 PF07233 Protein of unknown function (DUF1425) AM488_20215 PF13036 Protein of unknown function (DUF3897) AM488_20220 PF01636 Phosphotransferase enzyme family AM488_20225 PF00933 Glycosyl hydrolase family 3 N terminal domain AM488_20230 PF05728 Uncharacterised protein family (UPF0227) AM488_20235 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_20240 PF05433 AM488_20240 AM488_20245 PF00593 TonB dependent receptor AM488_20245 PF07715 TonB-dependent Receptor Plug Domain AM488_20250 PF00440 Bacterial regulatory proteins, tetR family AM488_20255 PF07338 Protein of unknown function (DUF1471) AM488_20260 PF01476 LysM domain AM488_20260 PF03734 L,D-transpeptidase catalytic domain AM488_20265 PF00270 DEAD/DEAH box helicase AM488_20265 PF00271 Helicase conserved C-terminal domain AM488_20265 PF02559 CarD-like/TRCF domain AM488_20265 PF03461 TRCF domain AM488_20270 PF02687 AM488_20270 AM488_20270 PF12704 MacB-like periplasmic core domain AM488_20275 PF00005 ABC transporter AM488_20280 PF02687 AM488_20280 AM488_20280 PF12704 MacB-like periplasmic core domain AM488_20285 PF00480 ROK family AM488_20290 PF02146 Sir2 family AM488_20300 PF00501 AMP-binding enzyme AM488_20300 PF13193 AMP-binding enzyme C-terminal domain AM488_20305 PF00171 Aldehyde dehydrogenase family AM488_20310 PF13343 Bacterial extracellular solute-binding protein AM488_20315 PF00528 Binding-protein-dependent transport system inner membrane component AM488_20320 PF00528 Binding-protein-dependent transport system inner membrane component AM488_20325 PF00005 ABC transporter AM488_20325 PF08402 TOBE domain AM488_20330 PF01546 Peptidase family M20/M25/M40 AM488_20330 PF07687 Peptidase dimerisation domain AM488_20335 PF08007 Cupin superfamily protein AM488_20340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_20340 PF08918 PhoQ Sensor AM488_20345 PF00072 Response regulator receiver domain AM488_20345 PF00486 Transcriptional regulatory protein, C terminal AM488_20350 PF02311 AraC-like ligand binding domain AM488_20350 PF12833 Helix-turn-helix domain AM488_20355 PF07883 Cupin domain AM488_20360 PF00206 Lyase AM488_20360 PF08328 Adenylosuccinate lyase C-terminal AM488_20365 PF04356 Protein of unknown function (DUF489) AM488_20370 PF03054 tRNA methyl transferase AM488_20375 PF00293 NUDIX domain AM488_20380 PF00849 RNA pseudouridylate synthase AM488_20385 PF00180 Isocitrate/isopropylmalate dehydrogenase AM488_20390 PF01022 Bacterial regulatory protein, arsR family AM488_20400 PF03992 Antibiotic biosynthesis monooxygenase AM488_20405 PF06906 AM488_20405 AM488_20410 PF08240 Alcohol dehydrogenase GroES-like domain AM488_20410 PF13823 Alcohol dehydrogenase GroES-associated AM488_20415 PF10685 AM488_20415 AM488_20420 PF05974 Domain of unknown function (DUF892) AM488_20425 PF05974 Domain of unknown function (DUF892) AM488_20430 PF05067 Manganese containing catalase AM488_20435 PF01654 AM488_20435 AM488_20440 PF02322 AM488_20440 AM488_20450 PF14090 AM488_20450 AM488_20460 PF00563 EAL domain AM488_20465 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AM488_20470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_20470 PF03466 LysR substrate binding domain AM488_20475 PF00672 HAMP domain AM488_20475 PF00990 GGDEF domain AM488_20480 PF01966 HD domain AM488_20485 PF00710 Asparaginase AM488_20495 PF03279 AM488_20495 AM488_20500 PF01810 AM488_20500 AM488_20505 PF10749 AM488_20505 AM488_20525 PF00990 GGDEF domain AM488_20525 PF13185 GAF domain AM488_20530 PF03891 AM488_20530 AM488_20535 PF04343 AM488_20535 AM488_20540 PF04463 AM488_20540 AM488_20545 PF00117 Glutamine amidotransferase class-I AM488_20550 PF07690 Major Facilitator Superfamily AM488_20555 PF12833 Helix-turn-helix domain AM488_20560 PF04284 AM488_20560 AM488_20565 PF04073 Aminoacyl-tRNA editing domain AM488_20570 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AM488_20575 PF06183 DinI-like family AM488_20585 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM488_20590 PF00717 Peptidase S24-like AM488_20595 PF00817 impB/mucB/samB family AM488_20595 PF11798 IMS family HHH motif AM488_20595 PF11799 impB/mucB/samB family C-terminal domain AM488_20595 PF13438 AM488_20595 AM488_20600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_20600 PF03466 LysR substrate binding domain AM488_20605 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_20610 PF07690 Major Facilitator Superfamily AM488_20615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_20615 PF03466 LysR substrate binding domain AM488_20625 PF00255 Glutathione peroxidase AM488_20635 PF04285 AM488_20635 AM488_20640 PF06798 AM488_20640 AM488_20640 PF08298 PrkA AAA domain AM488_20645 PF06629 AM488_20645 AM488_20650 PF00248 Aldo/keto reductase family AM488_20655 PF01263 Aldose 1-epimerase AM488_20660 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM488_20660 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM488_20665 PF01641 SelR domain AM488_20670 PF07023 AM488_20670 AM488_20675 PF01844 HNH endonuclease AM488_20680 PF00704 Glycosyl hydrolases family 18 AM488_20685 PF00107 Zinc-binding dehydrogenase AM488_20685 PF08240 Alcohol dehydrogenase GroES-like domain AM488_20690 PF00083 Sugar (and other) transporter AM488_20695 PF00107 Zinc-binding dehydrogenase AM488_20695 PF08240 Alcohol dehydrogenase GroES-like domain AM488_20700 PF01116 Fructose-bisphosphate aldolase class-II AM488_20705 PF00294 pfkB family carbohydrate kinase AM488_20710 PF00248 Aldo/keto reductase family AM488_20715 PF00455 AM488_20715 AM488_20715 PF08220 DeoR-like helix-turn-helix domain AM488_20720 PF00083 Sugar (and other) transporter AM488_20725 PF00857 Isochorismatase family AM488_20730 PF00710 Asparaginase AM488_20735 PF01343 Peptidase family S49 AM488_20740 PF00881 Nitroreductase family AM488_20755 PF01569 PAP2 superfamily AM488_20760 PF00586 AIR synthase related protein, N-terminal domain AM488_20760 PF02769 AIR synthase related protein, C-terminal domain AM488_20765 PF01131 DNA topoisomerase AM488_20765 PF01751 Toprim domain AM488_20770 PF00107 Zinc-binding dehydrogenase AM488_20770 PF08240 Alcohol dehydrogenase GroES-like domain AM488_20775 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM488_20775 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AM488_20780 PF00293 NUDIX domain AM488_20785 PF01066 CDP-alcohol phosphatidyltransferase AM488_20790 PF00581 Rhodanese-like domain AM488_20795 PF00005 ABC transporter AM488_20800 PF00528 Binding-protein-dependent transport system inner membrane component AM488_20805 PF13416 Bacterial extracellular solute-binding protein AM488_20810 PF02627 Carboxymuconolactone decarboxylase family AM488_20815 PF09335 AM488_20815 AM488_20820 PF09335 AM488_20820 AM488_20825 PF03372 Endonuclease/Exonuclease/phosphatase family AM488_20830 PF00202 Aminotransferase class-III AM488_20835 PF04958 Arginine N-succinyltransferase beta subunit AM488_20840 PF00171 Aldehyde dehydrogenase family AM488_20845 PF04996 Succinylarginine dihydrolase AM488_20850 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AM488_20855 PF07813 LTXXQ motif family protein AM488_20865 PF02540 NAD synthase AM488_20870 PF04355 SmpA / OmlA family AM488_20875 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_20880 PF02378 Phosphotransferase system, EIIC AM488_20885 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AM488_20890 PF07883 Cupin domain AM488_20890 PF12833 Helix-turn-helix domain AM488_20895 PF02056 Family 4 glycosyl hydrolase AM488_20895 PF11975 Family 4 glycosyl hydrolase C-terminal domain AM488_20900 PF04794 YdjC-like protein AM488_20905 PF00199 Catalase AM488_20905 PF06628 Catalase-related immune-responsive AM488_20910 PF10729 Cell division activator CedA AM488_20915 PF00375 Sodium:dicarboxylate symporter family AM488_20920 PF04307 AM488_20920 AM488_20925 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_20930 PF13419 Haloacid dehalogenase-like hydrolase AM488_20935 PF14002 AM488_20935 AM488_20940 PF03061 Thioesterase superfamily AM488_20945 PF00593 TonB dependent receptor AM488_20945 PF07715 TonB-dependent Receptor Plug Domain AM488_20950 PF04279 AM488_20950 AM488_20955 PF06790 AM488_20955 AM488_20960 PF03692 AM488_20960 AM488_20965 PF03922 OmpW family AM488_20970 PF13640 2OG-Fe(II) oxygenase superfamily AM488_20975 PF00593 TonB dependent receptor AM488_20975 PF07715 TonB-dependent Receptor Plug Domain AM488_20980 PF00106 short chain dehydrogenase AM488_20995 PF12802 MarR family AM488_21000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_21000 PF03466 LysR substrate binding domain AM488_21005 PF07690 Major Facilitator Superfamily AM488_21010 PF00180 Isocitrate/isopropylmalate dehydrogenase AM488_21015 PF05161 MOFRL family AM488_21015 PF13660 Domain of unknown function (DUF4147) AM488_21020 PF00290 Tryptophan synthase alpha chain AM488_21025 PF00291 Pyridoxal-phosphate dependent enzyme AM488_21030 PF00218 Indole-3-glycerol phosphate synthase AM488_21030 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AM488_21035 PF00117 Glutamine amidotransferase class-I AM488_21035 PF00591 Glycosyl transferase family, a/b domain AM488_21035 PF02885 Glycosyl transferase family, helical bundle domain AM488_21040 PF00425 chorismate binding enzyme AM488_21040 PF04715 Anthranilate synthase component I, N terminal region AM488_21045 PF02811 PHP domain AM488_21050 PF01300 Telomere recombination AM488_21055 PF00892 EamA-like transporter family AM488_21060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_21060 PF03466 LysR substrate binding domain AM488_21065 PF00849 RNA pseudouridylate synthase AM488_21065 PF01479 S4 domain AM488_21070 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AM488_21070 PF12557 Cob(I)alamin adenosyltransferase N terminal AM488_21075 PF00106 short chain dehydrogenase AM488_21085 PF01343 Peptidase family S49 AM488_21085 PF08496 AM488_21085 AM488_21090 PF10692 Protein of unknown function (DUF2498) AM488_21100 PF01131 DNA topoisomerase AM488_21100 PF01396 AM488_21100 AM488_21100 PF01751 Toprim domain AM488_21100 PF08272 Topoisomerase I zinc-ribbon-like AM488_21105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_21105 PF03466 LysR substrate binding domain AM488_21120 PF00330 Aconitase family (aconitate hydratase) AM488_21120 PF00694 Aconitase C-terminal domain AM488_21125 PF00925 GTP cyclohydrolase II AM488_21130 PF01569 PAP2 superfamily AM488_21135 PF06305 AM488_21135 AM488_21140 PF14559 Tetratricopeptide repeat AM488_21145 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM488_21150 PF01253 Translation initiation factor SUI1 AM488_21155 PF13488 AM488_21155 AM488_21160 PF00455 AM488_21160 AM488_21160 PF08220 DeoR-like helix-turn-helix domain AM488_21170 PF00575 S1 RNA binding domain AM488_21170 PF00773 RNB domain AM488_21170 PF08206 Ribonuclease B OB domain AM488_21180 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_21185 PF05962 HutD AM488_21190 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AM488_21195 PF00005 ABC transporter AM488_21200 PF00005 ABC transporter AM488_21200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM488_21205 PF00528 Binding-protein-dependent transport system inner membrane component AM488_21205 PF12911 AM488_21205 AM488_21210 PF00589 Phage integrase family AM488_21210 PF13356 Domain of unknown function (DUF4102) AM488_21220 PF05063 AM488_21220 AM488_21230 PF13610 AM488_21230 AM488_21235 PF00589 Phage integrase family AM488_21235 PF13495 Phage integrase, N-terminal SAM-like domain AM488_21240 PF01909 Nucleotidyltransferase domain AM488_21240 PF13427 AM488_21240 AM488_21245 PF00893 Small Multidrug Resistance protein AM488_21250 PF00809 Pterin binding enzyme AM488_21260 PF00583 Acetyltransferase (GNAT) family AM488_21270 PF13610 AM488_21270 AM488_21280 PF13610 AM488_21280 AM488_21305 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM488_21310 PF00717 Peptidase S24-like AM488_21315 PF00817 impB/mucB/samB family AM488_21315 PF11798 IMS family HHH motif AM488_21315 PF11799 impB/mucB/samB family C-terminal domain AM488_21315 PF13438 AM488_21315 AM488_21320 PF08867 AM488_21320 AM488_21325 PF02586 Uncharacterised ACR, COG2135 AM488_21330 PF00528 Binding-protein-dependent transport system inner membrane component AM488_21335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_21340 PF01370 NAD dependent epimerase/dehydratase family AM488_21345 PF13560 Helix-turn-helix domain AM488_21350 PF12833 Helix-turn-helix domain AM488_21355 PF01546 Peptidase family M20/M25/M40 AM488_21355 PF07687 Peptidase dimerisation domain AM488_21360 PF07690 Major Facilitator Superfamily AM488_21365 PF00158 Sigma-54 interaction domain AM488_21365 PF02954 Bacterial regulatory protein, Fis family AM488_21370 PF04012 AM488_21370 AM488_21375 PF06667 AM488_21375 AM488_21380 PF04024 AM488_21380 AM488_21385 PF09584 AM488_21385 AM488_21390 PF04317 AM488_21390 AM488_21395 PF05128 AM488_21395 AM488_21400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_21400 PF03466 LysR substrate binding domain AM488_21405 PF02056 Family 4 glycosyl hydrolase AM488_21405 PF11975 Family 4 glycosyl hydrolase C-terminal domain AM488_21410 PF00158 Sigma-54 interaction domain AM488_21415 PF05145 AM488_21415 AM488_21420 PF08534 Redoxin AM488_21425 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM488_21425 PF13378 Enolase C-terminal domain-like AM488_21430 PF00246 Zinc carboxypeptidase AM488_21435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_21450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_21450 PF03466 LysR substrate binding domain AM488_21460 PF07690 Major Facilitator Superfamily AM488_21465 PF00248 Aldo/keto reductase family AM488_21485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_21485 PF03466 LysR substrate binding domain AM488_21490 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_21495 PF01966 HD domain AM488_21500 PF01965 DJ-1/PfpI family AM488_21505 PF00589 Phage integrase family AM488_21505 PF13356 Domain of unknown function (DUF4102) AM488_21530 PF09669 AM488_21530 AM488_21540 PF01145 SPFH domain / Band 7 family AM488_21575 PF00717 Peptidase S24-like AM488_21575 PF01381 Helix-turn-helix AM488_21580 PF01381 Helix-turn-helix AM488_21590 PF00271 Helicase conserved C-terminal domain AM488_21590 PF04851 Type III restriction enzyme, res subunit AM488_21595 PF08273 Zinc-binding domain of primase-helicase AM488_21595 PF13362 Toprim domain AM488_21605 PF03589 Antitermination protein AM488_21610 PF16080 AM488_21610 AM488_21615 PF00959 Phage lysozyme AM488_21625 PF16518 AM488_21625 AM488_21635 PF04466 Phage terminase large subunit AM488_21635 PF17288 AM488_21635 AM488_21640 PF06381 AM488_21640 AM488_21645 PF04233 AM488_21645 AM488_21650 PF09979 AM488_21650 AM488_21660 PF09950 AM488_21660 AM488_21665 PF16808 AM488_21665 AM488_21670 PF13262 AM488_21670 AM488_21690 PF11863 AM488_21690 AM488_21695 PF11681 AM488_21695 AM488_21710 PF01464 Transglycosylase SLT domain AM488_21755 PF04865 AM488_21755 AM488_21760 PF11041 AM488_21760 AM488_21785 PF13385 Concanavalin A-like lectin/glucanases superfamily AM488_21800 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM488_21815 PF06183 DinI-like family AM488_21820 PF00589 Phage integrase family AM488_21820 PF13356 Domain of unknown function (DUF4102) AM488_21845 PF09669 AM488_21845 AM488_21855 PF01145 SPFH domain / Band 7 family AM488_21890 PF00717 Peptidase S24-like AM488_21890 PF01381 Helix-turn-helix AM488_21895 PF01381 Helix-turn-helix AM488_21905 PF00271 Helicase conserved C-terminal domain AM488_21905 PF04851 Type III restriction enzyme, res subunit AM488_21910 PF08273 Zinc-binding domain of primase-helicase AM488_21910 PF13362 Toprim domain AM488_21920 PF03589 Antitermination protein AM488_21925 PF16080 AM488_21925 AM488_21930 PF00959 Phage lysozyme AM488_21940 PF16518 AM488_21940 AM488_21950 PF04466 Phage terminase large subunit AM488_21950 PF17288 AM488_21950 AM488_21955 PF06381 AM488_21955 AM488_21960 PF04233 AM488_21960 AM488_21965 PF09979 AM488_21965 AM488_21975 PF09950 AM488_21975 AM488_21980 PF16808 AM488_21980 AM488_21985 PF13262 AM488_21985 AM488_22005 PF11863 AM488_22005 AM488_22010 PF11681 AM488_22010 AM488_22025 PF01464 Transglycosylase SLT domain AM488_22070 PF04865 AM488_22070 AM488_22075 PF11041 AM488_22075 AM488_22100 PF13385 Concanavalin A-like lectin/glucanases superfamily AM488_22115 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM488_22130 PF06183 DinI-like family AM488_22135 PF05591 AM488_22135 AM488_22140 PF05943 AM488_22140 AM488_22145 PF05936 AM488_22145 AM488_22150 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) AM488_22155 PF00691 OmpA family AM488_22160 PF05638 Protein of unknown function (DUF796) AM488_22165 PF00004 ATPase family associated with various cellular activities (AAA) AM488_22165 PF02861 Clp amino terminal domain AM488_22165 PF07724 AAA domain (Cdc48 subfamily) AM488_22165 PF10431 C-terminal, D2-small domain, of ClpB protein AM488_22170 PF05954 Phage late control gene D protein (GPD) AM488_22170 PF10106 AM488_22170 AM488_22170 PF13296 AM488_22170 AM488_22175 PF13503 AM488_22175 AM488_22180 PF11745 AM488_22180 AM488_22185 PF11745 AM488_22185 AM488_22190 PF11745 AM488_22190 AM488_22195 PF11745 AM488_22195 AM488_22200 PF11745 AM488_22200 AM488_22205 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) AM488_22210 PF05488 PAAR motif AM488_22220 PF06744 AM488_22220 AM488_22220 PF06761 AM488_22220 AM488_22225 PF06812 AM488_22225 AM488_22230 PF16989 AM488_22230 AM488_22235 PF05947 AM488_22235 AM488_22240 PF06996 AM488_22240 AM488_22245 PF12790 Type VI secretion lipoprotein AM488_22255 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_22260 PF00440 Bacterial regulatory proteins, tetR family AM488_22265 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_22270 PF06719 AM488_22270 AM488_22270 PF12833 Helix-turn-helix domain AM488_22275 PF07338 Protein of unknown function (DUF1471) AM488_22280 PF05368 NmrA-like family AM488_22285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_22285 PF03466 LysR substrate binding domain AM488_22290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_22290 PF03466 LysR substrate binding domain AM488_22295 PF00753 Metallo-beta-lactamase superfamily AM488_22300 PF05368 NmrA-like family AM488_22305 PF00440 Bacterial regulatory proteins, tetR family AM488_22310 PF08240 Alcohol dehydrogenase GroES-like domain AM488_22310 PF13602 Zinc-binding dehydrogenase AM488_22315 PF00155 Aminotransferase class I and II AM488_22320 PF03180 NLPA lipoprotein AM488_22325 PF00005 ABC transporter AM488_22325 PF09383 NIL domain AM488_22330 PF00528 Binding-protein-dependent transport system inner membrane component AM488_22335 PF00155 Aminotransferase class I and II AM488_22340 PF02588 AM488_22340 AM488_22345 PF01037 AsnC family AM488_22345 PF13404 AsnC-type helix-turn-helix domain AM488_22350 PF00324 Amino acid permease AM488_22365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM488_22365 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM488_22370 PF00455 AM488_22370 AM488_22370 PF08220 DeoR-like helix-turn-helix domain AM488_22380 PF01544 CorA-like Mg2+ transporter protein AM488_22390 PF00270 DEAD/DEAH box helicase AM488_22390 PF00271 Helicase conserved C-terminal domain AM488_22390 PF03880 DbpA RNA binding domain AM488_22395 PF01171 PP-loop family AM488_22400 PF00582 Universal stress protein family AM488_22405 PF13619 AM488_22405 AM488_22410 PF00267 Gram-negative porin AM488_22415 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AM488_22415 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AM488_22415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM488_22415 PF10371 Domain of unknown function AM488_22415 PF13484 AM488_22415 AM488_22415 PF17147 AM488_22415 AM488_22425 PF03891 AM488_22425 AM488_22430 PF03724 META domain AM488_22435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM488_22435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM488_22440 PF09335 AM488_22440 AM488_22445 PF11739 AM488_22445 AM488_22450 PF13617 AM488_22450 AM488_22455 PF07027 AM488_22455 AM488_22460 PF12833 Helix-turn-helix domain AM488_22460 PF14525 AM488_22460 AM488_22465 PF00171 Aldehyde dehydrogenase family AM488_22470 PF02558 Ketopantoate reductase PanE/ApbA AM488_22470 PF08546 Ketopantoate reductase PanE/ApbA C terminal AM488_22480 PF01179 Copper amine oxidase, enzyme domain AM488_22480 PF02727 Copper amine oxidase, N2 domain AM488_22480 PF02728 Copper amine oxidase, N3 domain AM488_22480 PF07833 Copper amine oxidase N-terminal domain AM488_22495 PF00171 Aldehyde dehydrogenase family AM488_22495 PF01575 MaoC like domain AM488_22500 PF05138 Phenylacetic acid catabolic protein AM488_22505 PF06243 Phenylacetic acid degradation B AM488_22510 PF05138 Phenylacetic acid catabolic protein AM488_22515 PF01883 Domain of unknown function DUF59 AM488_22520 PF00111 2Fe-2S iron-sulfur cluster binding domain AM488_22520 PF00175 Oxidoreductase NAD-binding domain AM488_22520 PF00970 Oxidoreductase FAD-binding domain AM488_22525 PF00378 Enoyl-CoA hydratase/isomerase family AM488_22530 PF00378 Enoyl-CoA hydratase/isomerase family AM488_22535 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM488_22535 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM488_22540 PF03061 Thioesterase superfamily AM488_22545 PF00108 Thiolase, N-terminal domain AM488_22545 PF02803 Thiolase, C-terminal domain AM488_22550 PF00501 AMP-binding enzyme AM488_22550 PF14535 AMP-binding enzyme C-terminal domain AM488_22555 PF07848 PaaX-like protein AM488_22555 PF08223 PaaX-like protein C-terminal domain AM488_22560 PF00132 Bacterial transferase hexapeptide (six repeats) AM488_22565 PF04828 Glutathione-dependent formaldehyde-activating enzyme AM488_22570 PF02525 Flavodoxin-like fold AM488_22575 PF00270 DEAD/DEAH box helicase AM488_22575 PF00271 Helicase conserved C-terminal domain AM488_22575 PF04408 Helicase associated domain (HA2) AM488_22575 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AM488_22575 PF11898 AM488_22575 AM488_22580 PF01596 O-methyltransferase AM488_22585 PF02321 Outer membrane efflux protein AM488_22590 PF13437 HlyD family secretion protein AM488_22590 PF13533 Biotin-lipoyl like AM488_22595 PF07690 Major Facilitator Superfamily AM488_22600 PF12802 MarR family AM488_22605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_22605 PF03466 LysR substrate binding domain AM488_22610 PF00248 Aldo/keto reductase family AM488_22615 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM488_22615 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AM488_22620 PF00202 Aminotransferase class-III AM488_22625 PF04958 Arginine N-succinyltransferase beta subunit AM488_22630 PF00171 Aldehyde dehydrogenase family AM488_22635 PF04996 Succinylarginine dihydrolase AM488_22640 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AM488_22645 PF00324 Amino acid permease AM488_22650 PF00083 Sugar (and other) transporter AM488_22650 PF07690 Major Facilitator Superfamily AM488_22655 PF02698 DUF218 domain AM488_22660 PF00171 Aldehyde dehydrogenase family AM488_22665 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM488_22665 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM488_22670 PF01679 AM488_22670 AM488_22675 PF07166 Protein of unknown function (DUF1398) AM488_22680 PF01206 Sulfurtransferase TusA AM488_22685 PF04143 AM488_22685 AM488_22690 PF06993 AM488_22690 AM488_22700 PF14001 AM488_22700 AM488_22705 PF01544 CorA-like Mg2+ transporter protein AM488_22710 PF00155 Aminotransferase class I and II AM488_22715 PF00367 phosphotransferase system, EIIB AM488_22715 PF02378 Phosphotransferase system, EIIC AM488_22720 PF00356 Bacterial regulatory proteins, lacI family AM488_22720 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM488_22725 PF06097 AM488_22725 AM488_22730 PF01238 Phosphomannose isomerase type I AM488_22735 PF05681 AM488_22735 AM488_22735 PF05683 Fumarase C-terminus AM488_22740 PF00206 Lyase AM488_22740 PF10415 Fumarase C C-terminus AM488_22745 PF05472 DNA replication terminus site-binding protein (Ter protein) AM488_22750 PF00512 His Kinase A (phospho-acceptor) domain AM488_22750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_22760 PF00072 Response regulator receiver domain AM488_22760 PF00486 Transcriptional regulatory protein, C terminal AM488_22765 PF06942 AM488_22765 AM488_22770 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_22775 PF13520 Amino acid permease AM488_22785 PF07338 Protein of unknown function (DUF1471) AM488_22795 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AM488_22795 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AM488_22795 PF12769 Domain of unknown function (DUF3814) AM488_22800 PF02233 NAD(P) transhydrogenase beta subunit AM488_22805 PF15930 AM488_22805 AM488_22810 PF00582 Universal stress protein family AM488_22815 PF00027 Cyclic nucleotide-binding domain AM488_22815 PF13545 Crp-like helix-turn-helix domain AM488_22820 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM488_22820 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM488_22830 PF03806 AM488_22830 AM488_22835 PF07687 Peptidase dimerisation domain AM488_22840 PF01546 Peptidase family M20/M25/M40 AM488_22840 PF07687 Peptidase dimerisation domain AM488_22845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_22845 PF03466 LysR substrate binding domain AM488_22850 PF01713 Smr domain AM488_22855 PF01614 Bacterial transcriptional regulator AM488_22855 PF09339 IclR helix-turn-helix domain AM488_22860 PF01144 Coenzyme A transferase AM488_22865 PF01144 Coenzyme A transferase AM488_22870 PF00108 Thiolase, N-terminal domain AM488_22870 PF02803 Thiolase, C-terminal domain AM488_22875 PF00206 Lyase AM488_22875 PF10397 Adenylosuccinate lyase C-terminus AM488_22880 PF12146 Putative lysophospholipase AM488_22885 PF02627 Carboxymuconolactone decarboxylase family AM488_22900 PF00924 Mechanosensitive ion channel AM488_22905 PF05681 AM488_22905 AM488_22905 PF05683 Fumarase C-terminus AM488_22910 PF00939 Sodium:sulfate symporter transmembrane region AM488_22920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM488_22920 PF00890 FAD binding domain AM488_22920 PF04205 FMN-binding domain AM488_22925 PF02424 ApbE family AM488_22930 PF00072 Response regulator receiver domain AM488_22935 PF00989 PAS fold AM488_22935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_22935 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AM488_22935 PF17203 AM488_22935 AM488_22950 PF06039 AM488_22950 AM488_22955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_22955 PF03466 LysR substrate binding domain AM488_22960 PF00698 Acyl transferase domain AM488_22965 PF10620 AM488_22965 AM488_22970 PF03547 AM488_22970 AM488_22975 PF06833 Malonate decarboxylase gamma subunit (MdcE) AM488_22980 PF01039 Carboxyl transferase domain AM488_22985 PF06857 AM488_22985 AM488_22990 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AM488_22995 PF16957 AM488_22995 AM488_23000 PF01594 AM488_23000 AM488_23005 PF00893 Small Multidrug Resistance protein AM488_23010 PF00893 Small Multidrug Resistance protein AM488_23020 PF00089 Trypsin AM488_23030 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AM488_23035 PF07690 Major Facilitator Superfamily AM488_23040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_23040 PF03466 LysR substrate binding domain AM488_23045 PF00480 ROK family AM488_23050 PF13500 AAA domain AM488_23055 PF00654 Voltage gated chloride channel AM488_23060 PF02613 Nitrate reductase delta subunit AM488_23065 PF04976 AM488_23065 AM488_23070 PF12800 4Fe-4S binding domain AM488_23070 PF13247 4Fe-4S dicluster domain AM488_23075 PF00384 Molybdopterin oxidoreductase AM488_23075 PF01568 Molydopterin dinucleotide binding domain AM488_23075 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM488_23080 PF06649 AM488_23080 AM488_23085 PF06788 AM488_23085 AM488_23090 PF13302 Acetyltransferase (GNAT) domain AM488_23095 PF06932 AM488_23095 AM488_23100 PF02694 AM488_23100 AM488_23105 PF07690 Major Facilitator Superfamily AM488_23110 PF01232 Mannitol dehydrogenase Rossmann domain AM488_23110 PF08125 Mannitol dehydrogenase C-terminal domain AM488_23115 PF00582 Universal stress protein family AM488_23120 PF00392 Bacterial regulatory proteins, gntR family AM488_23120 PF07729 FCD domain AM488_23125 PF00106 short chain dehydrogenase AM488_23130 PF01432 Peptidase family M3 AM488_23140 PF02311 AraC-like ligand binding domain AM488_23140 PF12833 Helix-turn-helix domain AM488_23145 PF02586 Uncharacterised ACR, COG2135 AM488_23150 PF00196 Bacterial regulatory proteins, luxR family AM488_23160 PF00011 Hsp20/alpha crystallin family AM488_23165 PF02464 Competence-damaged protein AM488_23170 PF00563 EAL domain AM488_23170 PF04940 Sensors of blue-light using FAD AM488_23180 PF00196 Bacterial regulatory proteins, luxR family AM488_23185 PF12833 Helix-turn-helix domain AM488_23190 PF02447 AM488_23190 AM488_23195 PF01261 Xylose isomerase-like TIM barrel AM488_23200 PF00596 Class II Aldolase and Adducin N-terminal domain AM488_23205 PF07005 Protein of unknown function, DUF1537 AM488_23205 PF17042 AM488_23205 AM488_23210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM488_23210 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM488_23215 PF00455 AM488_23215 AM488_23215 PF08220 DeoR-like helix-turn-helix domain AM488_23220 PF13354 Beta-lactamase enzyme family AM488_23230 PF13304 AAA domain AM488_23235 PF01306 LacY proton/sugar symporter AM488_23240 PF00703 Glycosyl hydrolases family 2 AM488_23240 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AM488_23240 PF02837 Glycosyl hydrolases family 2, sugar binding domain AM488_23240 PF02929 Beta galactosidase small chain AM488_23240 PF16353 AM488_23240 AM488_23245 PF00356 Bacterial regulatory proteins, lacI family AM488_23245 PF13377 Periplasmic binding protein-like domain AM488_23250 PF13673 Acetyltransferase (GNAT) domain AM488_23255 PF13783 AM488_23255 AM488_23260 PF01965 DJ-1/PfpI family AM488_23260 PF12833 Helix-turn-helix domain AM488_23265 PF00581 Rhodanese-like domain AM488_23270 PF01717 Cobalamin-independent synthase, Catalytic domain AM488_23275 PF13433 Periplasmic binding protein domain AM488_23280 PF02653 AM488_23280 AM488_23285 PF02653 AM488_23285 AM488_23290 PF00005 ABC transporter AM488_23290 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM488_23295 PF00005 ABC transporter AM488_23300 PF01381 Helix-turn-helix AM488_23300 PF13239 AM488_23300 AM488_23305 PF07690 Major Facilitator Superfamily AM488_23310 PF00892 EamA-like transporter family AM488_23315 PF13999 AM488_23315 AM488_23320 PF12833 Helix-turn-helix domain AM488_23325 PF01047 MarR family AM488_23330 PF01914 AM488_23330 AM488_23335 PF07690 Major Facilitator Superfamily AM488_23340 PF02567 Phenazine biosynthesis-like protein AM488_23345 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_23350 PF04074 Domain of unknown function (DUF386) AM488_23355 PF13088 BNR repeat-like domain AM488_23360 PF00474 Sodium:solute symporter family AM488_23365 PF00701 Dihydrodipicolinate synthetase family AM488_23370 PF00465 Iron-containing alcohol dehydrogenase AM488_23375 PF07005 Protein of unknown function, DUF1537 AM488_23375 PF17042 AM488_23375 AM488_23380 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AM488_23385 PF00455 AM488_23385 AM488_23385 PF08220 DeoR-like helix-turn-helix domain AM488_23390 PF00056 lactate/malate dehydrogenase, NAD binding domain AM488_23390 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AM488_23395 PF00583 Acetyltransferase (GNAT) family AM488_23400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_23400 PF03466 LysR substrate binding domain AM488_23405 PF00171 Aldehyde dehydrogenase family AM488_23410 PF04960 Glutaminase AM488_23415 PF13811 AM488_23415 AM488_23420 PF00990 GGDEF domain AM488_23425 PF13673 Acetyltransferase (GNAT) domain AM488_23430 PF01232 Mannitol dehydrogenase Rossmann domain AM488_23430 PF08125 Mannitol dehydrogenase C-terminal domain AM488_23435 PF00583 Acetyltransferase (GNAT) family AM488_23460 PF05638 Protein of unknown function (DUF796) AM488_23465 PF14552 Tautomerase enzyme AM488_23470 PF02627 Carboxymuconolactone decarboxylase family AM488_23475 PF13489 Methyltransferase domain AM488_23485 PF07690 Major Facilitator Superfamily AM488_23500 PF06779 AM488_23500 AM488_23505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_23505 PF03466 LysR substrate binding domain AM488_23510 PF03060 Nitronate monooxygenase AM488_23515 PF00528 Binding-protein-dependent transport system inner membrane component AM488_23520 PF00005 ABC transporter AM488_23525 PF03180 NLPA lipoprotein AM488_23530 PF03171 2OG-Fe(II) oxygenase superfamily AM488_23530 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AM488_23535 PF09905 Uncharacterized conserved protein (DUF2132) AM488_23540 PF06052 3-hydroxyanthranilic acid dioxygenase AM488_23545 PF13468 Glyoxalase-like domain AM488_23550 PF12833 Helix-turn-helix domain AM488_23550 PF12852 Cupin AM488_23555 PF07690 Major Facilitator Superfamily AM488_23560 PF00111 2Fe-2S iron-sulfur cluster binding domain AM488_23560 PF00175 Oxidoreductase NAD-binding domain AM488_23565 PF00355 Rieske [2Fe-2S] domain AM488_23570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_23570 PF03466 LysR substrate binding domain AM488_23575 PF01494 FAD binding domain AM488_23580 PF00860 Permease family AM488_23585 PF09349 OHCU decarboxylase AM488_23590 PF00576 HIUase/Transthyretin family AM488_23595 PF01381 Helix-turn-helix AM488_23600 PF07804 HipA-like C-terminal domain AM488_23600 PF13657 HipA N-terminal domain AM488_23605 PF02638 AM488_23605 AM488_23610 PF00419 Fimbrial protein AM488_23615 PF00577 Outer membrane usher protein AM488_23615 PF13953 PapC C-terminal domain AM488_23615 PF13954 PapC N-terminal domain AM488_23620 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM488_23620 PF02753 Pili assembly chaperone PapD, C-terminal domain AM488_23625 PF00419 Fimbrial protein AM488_23635 PF00557 Metallopeptidase family M24 AM488_23640 PF11903 AM488_23640 AM488_23650 PF00563 EAL domain AM488_23650 PF00990 GGDEF domain AM488_23650 PF13426 PAS domain AM488_23655 PF00756 Putative esterase AM488_23670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_23675 PF00083 Sugar (and other) transporter AM488_23685 PF02056 Family 4 glycosyl hydrolase AM488_23685 PF11975 Family 4 glycosyl hydrolase C-terminal domain AM488_23690 PF00367 phosphotransferase system, EIIB AM488_23690 PF02378 Phosphotransferase system, EIIC AM488_23695 PF00392 Bacterial regulatory proteins, gntR family AM488_23695 PF07702 UTRA domain AM488_23700 PF01925 AM488_23700 AM488_23705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_23705 PF03466 LysR substrate binding domain AM488_23710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM488_23710 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM488_23715 PF05651 AM488_23715 AM488_23715 PF13556 PucR C-terminal helix-turn-helix domain AM488_23720 PF02595 Glycerate kinase family AM488_23725 PF07690 Major Facilitator Superfamily AM488_23730 PF08450 SMP-30/Gluconolaconase/LRE-like region AM488_23735 PF07690 Major Facilitator Superfamily AM488_23740 PF00108 Thiolase, N-terminal domain AM488_23740 PF02803 Thiolase, C-terminal domain AM488_23745 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_23750 PF01144 Coenzyme A transferase AM488_23755 PF00501 AMP-binding enzyme AM488_23755 PF13193 AMP-binding enzyme C-terminal domain AM488_23760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_23765 PF07690 Major Facilitator Superfamily AM488_23770 PF00294 pfkB family carbohydrate kinase AM488_23775 PF00834 Ribulose-phosphate 3 epimerase family AM488_23780 PF10012 AM488_23780 AM488_23785 PF01965 DJ-1/PfpI family AM488_23785 PF12833 Helix-turn-helix domain AM488_23790 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM488_23790 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM488_23800 PF00248 Aldo/keto reductase family AM488_23810 PF00248 Aldo/keto reductase family AM488_23815 PF00248 Aldo/keto reductase family AM488_23820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_23820 PF03466 LysR substrate binding domain AM488_23825 PF04229 GrpB protein AM488_23830 PF00072 Response regulator receiver domain AM488_23830 PF02954 Bacterial regulatory protein, Fis family AM488_23830 PF14532 Sigma-54 interaction domain AM488_23835 PF00512 His Kinase A (phospho-acceptor) domain AM488_23835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_23840 PF13343 Bacterial extracellular solute-binding protein AM488_23850 PF07690 Major Facilitator Superfamily AM488_23855 PF00753 Metallo-beta-lactamase superfamily AM488_23860 PF13701 AM488_23860 AM488_23870 PF01476 LysM domain AM488_23870 PF04972 BON domain AM488_23875 PF12146 Putative lysophospholipase AM488_23880 PF03070 TENA/THI-4/PQQC family AM488_23885 PF03437 BtpA family AM488_23890 PF00294 pfkB family carbohydrate kinase AM488_23895 PF13407 Periplasmic binding protein domain AM488_23900 PF00356 Bacterial regulatory proteins, lacI family AM488_23900 PF13377 Periplasmic binding protein-like domain AM488_23905 PF00005 ABC transporter AM488_23910 PF02653 AM488_23910 AM488_23915 PF02126 Phosphotriesterase family AM488_23920 PF07090 Protein of unknown function (DUF1355) AM488_23925 PF01546 Peptidase family M20/M25/M40 AM488_23925 PF07687 Peptidase dimerisation domain AM488_23930 PF06519 TolA C-terminal AM488_23935 PF00753 Metallo-beta-lactamase superfamily AM488_23940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_23940 PF03466 LysR substrate binding domain AM488_23945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_23945 PF03466 LysR substrate binding domain AM488_23950 PF07690 Major Facilitator Superfamily AM488_23955 PF01810 AM488_23955 AM488_23965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_23970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_23975 PF00834 Ribulose-phosphate 3 epimerase family AM488_23980 PF03611 AM488_23980 AM488_23985 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_23990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_23995 PF00356 Bacterial regulatory proteins, lacI family AM488_23995 PF13377 Periplasmic binding protein-like domain AM488_24005 PF07690 Major Facilitator Superfamily AM488_24010 PF13302 Acetyltransferase (GNAT) domain AM488_24020 PF00440 Bacterial regulatory proteins, tetR family AM488_24025 PF14518 Iron-containing redox enzyme AM488_24030 PF00892 EamA-like transporter family AM488_24035 PF07690 Major Facilitator Superfamily AM488_24040 PF13454 FAD-NAD(P)-binding AM488_24045 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM488_24055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_24055 PF03466 LysR substrate binding domain AM488_24060 PF03060 Nitronate monooxygenase AM488_24065 PF01546 Peptidase family M20/M25/M40 AM488_24065 PF07687 Peptidase dimerisation domain AM488_24070 PF00266 Aminotransferase class-V AM488_24075 PF00005 ABC transporter AM488_24080 PF00528 Binding-protein-dependent transport system inner membrane component AM488_24085 PF00528 Binding-protein-dependent transport system inner membrane component AM488_24090 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_24095 PF01380 SIS domain AM488_24095 PF01418 Helix-turn-helix domain, rpiR family AM488_24100 PF01019 Gamma-glutamyltranspeptidase AM488_24105 PF13318 AM488_24105 AM488_24110 PF01425 Amidase AM488_24115 PF11533 Protein of unknown function (DUF3225) AM488_24120 PF00583 Acetyltransferase (GNAT) family AM488_24125 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM488_24125 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM488_24130 PF01638 HxlR-like helix-turn-helix AM488_24135 PF00529 HlyD family secretion protein AM488_24135 PF16576 AM488_24135 AM488_24140 PF07690 Major Facilitator Superfamily AM488_24145 PF00109 Beta-ketoacyl synthase, N-terminal domain AM488_24145 PF02801 Beta-ketoacyl synthase, C-terminal domain AM488_24155 PF04266 ASCH domain AM488_24165 PF02311 AraC-like ligand binding domain AM488_24165 PF12833 Helix-turn-helix domain AM488_24170 PF00117 Glutamine amidotransferase class-I AM488_24175 PF00106 short chain dehydrogenase AM488_24185 PF00857 Isochorismatase family AM488_24195 PF00300 Histidine phosphatase superfamily (branch 1) AM488_24205 PF02311 AraC-like ligand binding domain AM488_24205 PF12833 Helix-turn-helix domain AM488_24210 PF01925 AM488_24210 AM488_24215 PF01522 Polysaccharide deacetylase AM488_24220 PF01177 Asp/Glu/Hydantoin racemase AM488_24225 PF00392 Bacterial regulatory proteins, gntR family AM488_24225 PF07729 FCD domain AM488_24230 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AM488_24235 PF01979 Amidohydrolase family AM488_24240 PF00990 GGDEF domain AM488_24240 PF08448 PAS fold AM488_24240 PF13188 PAS domain AM488_24245 PF00356 Bacterial regulatory proteins, lacI family AM488_24245 PF13407 Periplasmic binding protein domain AM488_24250 PF01261 Xylose isomerase-like TIM barrel AM488_24255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM488_24255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM488_24260 PF13265 AM488_24260 AM488_24265 PF03070 TENA/THI-4/PQQC family AM488_24270 PF00005 ABC transporter AM488_24275 PF00528 Binding-protein-dependent transport system inner membrane component AM488_24280 PF09084 NMT1/THI5 like AM488_24285 PF00202 Aminotransferase class-III AM488_24290 PF00282 Pyridoxal-dependent decarboxylase conserved domain AM488_24295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_24295 PF03466 LysR substrate binding domain AM488_24300 PF00578 AhpC/TSA family AM488_24300 PF02683 AM488_24300 AM488_24305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_24310 PF00072 Response regulator receiver domain AM488_24310 PF00486 Transcriptional regulatory protein, C terminal AM488_24315 PF00561 alpha/beta hydrolase fold AM488_24320 PF01244 Membrane dipeptidase (Peptidase family M19) AM488_24325 PF08042 AM488_24325 AM488_24330 PF12706 Beta-lactamase superfamily domain AM488_24335 PF03070 TENA/THI-4/PQQC family AM488_24340 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AM488_24345 PF04055 Radical SAM superfamily AM488_24345 PF13186 Iron-sulfur cluster-binding domain AM488_24345 PF13353 4Fe-4S single cluster domain AM488_24350 PF00675 Insulinase (Peptidase family M16) AM488_24355 PF00117 Glutamine amidotransferase class-I AM488_24360 PF00905 Penicillin binding protein transpeptidase domain AM488_24360 PF03717 Penicillin-binding Protein dimerisation domain AM488_24365 PF04657 AM488_24365 AM488_24370 PF04657 AM488_24370 AM488_24375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_24375 PF03466 LysR substrate binding domain AM488_24380 PF00141 Peroxidase AM488_24385 PF03969 AFG1-like ATPase AM488_24390 PF02308 AM488_24390 AM488_24400 PF00083 Sugar (and other) transporter AM488_24405 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AM488_24410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_24415 PF07859 alpha/beta hydrolase fold AM488_24420 PF02264 LamB porin AM488_24425 PF02311 AraC-like ligand binding domain AM488_24425 PF12833 Helix-turn-helix domain AM488_24430 PF05592 Bacterial alpha-L-rhamnosidase AM488_24430 PF08531 Alpha-L-rhamnosidase N-terminal domain AM488_24430 PF17389 AM488_24430 AM488_24430 PF17390 AM488_24430 AM488_24435 PF02378 Phosphotransferase system, EIIC AM488_24440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_24440 PF03466 LysR substrate binding domain AM488_24445 PF00384 Molybdopterin oxidoreductase AM488_24445 PF01568 Molydopterin dinucleotide binding domain AM488_24450 PF01062 AM488_24450 AM488_24455 PF01545 Cation efflux family AM488_24455 PF16916 AM488_24455 AM488_24465 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_24470 PF09995 AM488_24470 AM488_24475 PF02566 OsmC-like protein AM488_24480 PF04076 Bacterial OB fold (BOF) protein AM488_24490 PF04239 Protein of unknown function (DUF421) AM488_24495 PF00106 short chain dehydrogenase AM488_24500 PF00128 Alpha amylase, catalytic domain AM488_24510 PF05974 Domain of unknown function (DUF892) AM488_24525 PF10685 AM488_24525 AM488_24530 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_24535 PF10820 AM488_24535 AM488_24540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_24540 PF03466 LysR substrate binding domain AM488_24545 PF00753 Metallo-beta-lactamase superfamily AM488_24550 PF08136 AM488_24550 AM488_24555 PF00390 Malic enzyme, N-terminal domain AM488_24555 PF03949 Malic enzyme, NAD binding domain AM488_24570 PF00005 ABC transporter AM488_24575 PF00583 Acetyltransferase (GNAT) family AM488_24575 PF12802 MarR family AM488_24580 PF00719 Inorganic pyrophosphatase AM488_24585 PF00107 Zinc-binding dehydrogenase AM488_24585 PF08240 Alcohol dehydrogenase GroES-like domain AM488_24590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_24595 PF00528 Binding-protein-dependent transport system inner membrane component AM488_24600 PF00528 Binding-protein-dependent transport system inner membrane component AM488_24605 PF00005 ABC transporter AM488_24605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM488_24610 PF00296 Luciferase-like monooxygenase AM488_24615 PF02627 Carboxymuconolactone decarboxylase family AM488_24620 PF07690 Major Facilitator Superfamily AM488_24625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_24630 PF03976 Polyphosphate kinase 2 (PPK2) AM488_24640 PF01845 CcdB protein AM488_24645 PF01292 Prokaryotic cytochrome b561 AM488_24650 PF09163 Formate dehydrogenase N, transmembrane AM488_24650 PF12800 4Fe-4S binding domain AM488_24650 PF13247 4Fe-4S dicluster domain AM488_24660 PF00892 EamA-like transporter family AM488_24665 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_24670 PF00111 2Fe-2S iron-sulfur cluster binding domain AM488_24670 PF00175 Oxidoreductase NAD-binding domain AM488_24670 PF00970 Oxidoreductase FAD-binding domain AM488_24675 PF00866 Ring hydroxylating beta subunit AM488_24680 PF00355 Rieske [2Fe-2S] domain AM488_24680 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM488_24685 PF00775 Dioxygenase AM488_24685 PF04444 Catechol dioxygenase N terminus AM488_24690 PF02426 Muconolactone delta-isomerase AM488_24695 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM488_24695 PF13378 Enolase C-terminal domain-like AM488_24700 PF01614 Bacterial transcriptional regulator AM488_24700 PF09339 IclR helix-turn-helix domain AM488_24705 PF07690 Major Facilitator Superfamily AM488_24710 PF00440 Bacterial regulatory proteins, tetR family AM488_24710 PF13977 Bacterial transcriptional repressor AM488_24715 PF07690 Major Facilitator Superfamily AM488_24720 PF00384 Molybdopterin oxidoreductase AM488_24720 PF01568 Molydopterin dinucleotide binding domain AM488_24720 PF14710 Respiratory nitrate reductase alpha N-terminal AM488_24725 PF13247 4Fe-4S dicluster domain AM488_24725 PF14711 Respiratory nitrate reductase beta C-terminal AM488_24730 PF02613 Nitrate reductase delta subunit AM488_24735 PF02665 Nitrate reductase gamma subunit AM488_24740 PF00797 N-acetyltransferase AM488_24745 PF00528 Binding-protein-dependent transport system inner membrane component AM488_24750 PF13343 Bacterial extracellular solute-binding protein AM488_24755 PF00005 ABC transporter AM488_24760 PF01613 Flavin reductase like domain AM488_24765 PF02311 AraC-like ligand binding domain AM488_24765 PF12833 Helix-turn-helix domain AM488_24770 PF17389 AM488_24770 AM488_24775 PF13347 MFS/sugar transport protein AM488_24780 PF02264 LamB porin AM488_24780 PF11471 AM488_24780 AM488_24795 PF01381 Helix-turn-helix AM488_24800 PF01361 Tautomerase enzyme AM488_24805 PF13417 Glutathione S-transferase, N-terminal domain AM488_24810 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_24815 PF00005 ABC transporter AM488_24820 PF00528 Binding-protein-dependent transport system inner membrane component AM488_24825 PF00583 Acetyltransferase (GNAT) family AM488_24830 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_24835 PF00296 Luciferase-like monooxygenase AM488_24840 PF01546 Peptidase family M20/M25/M40 AM488_24840 PF07687 Peptidase dimerisation domain AM488_24845 PF00296 Luciferase-like monooxygenase AM488_24860 PF00324 Amino acid permease AM488_24865 PF06004 Bacterial protein of unknown function (DUF903) AM488_24875 PF00593 TonB dependent receptor AM488_24875 PF07715 TonB-dependent Receptor Plug Domain AM488_24880 PF07969 Amidohydrolase family AM488_24885 PF04175 Protein of unknown function (DUF406) AM488_24895 PF01156 Inosine-uridine preferring nucleoside hydrolase AM488_24900 PF00107 Zinc-binding dehydrogenase AM488_24900 PF16884 AM488_24900 AM488_24905 PF01381 Helix-turn-helix AM488_24910 PF13420 Acetyltransferase (GNAT) domain AM488_24915 PF04657 AM488_24915 AM488_24920 PF10735 AM488_24920 AM488_24925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_24930 PF00171 Aldehyde dehydrogenase family AM488_24935 PF12697 Alpha/beta hydrolase family AM488_24940 PF10753 AM488_24940 AM488_24960 PF00171 Aldehyde dehydrogenase family AM488_24965 PF00528 Binding-protein-dependent transport system inner membrane component AM488_24970 PF00528 Binding-protein-dependent transport system inner membrane component AM488_24975 PF00005 ABC transporter AM488_24975 PF08402 TOBE domain AM488_24980 PF13416 Bacterial extracellular solute-binding protein AM488_24985 PF00155 Aminotransferase class I and II AM488_24985 PF00392 Bacterial regulatory proteins, gntR family AM488_24990 PF01654 AM488_24990 AM488_24995 PF02322 AM488_24995 AM488_25000 PF10617 AM488_25000 AM488_25010 PF10829 AM488_25010 AM488_25015 PF01136 AM488_25015 AM488_25015 PF12392 AM488_25015 AM488_25025 PF01381 Helix-turn-helix AM488_25025 PF07883 Cupin domain AM488_25030 PF03594 AM488_25030 AM488_25035 PF12833 Helix-turn-helix domain AM488_25040 PF00892 EamA-like transporter family AM488_25045 PF11769 AM488_25045 AM488_25050 PF03848 Tellurite resistance protein TehB AM488_25055 PF03595 Voltage-dependent anion channel AM488_25065 PF13302 Acetyltransferase (GNAT) domain AM488_25070 PF04349 Periplasmic glucan biosynthesis protein, MdoG AM488_25075 PF00107 Zinc-binding dehydrogenase AM488_25075 PF08240 Alcohol dehydrogenase GroES-like domain AM488_25080 PF00135 Carboxylesterase family AM488_25085 PF07063 Domain of unknown function (DUF1338) AM488_25090 PF00775 Dioxygenase AM488_25090 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AM488_25095 PF00775 Dioxygenase AM488_25100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_25100 PF03466 LysR substrate binding domain AM488_25105 PF01011 PQQ enzyme repeat AM488_25105 PF13360 PQQ-like domain AM488_25110 PF00107 Zinc-binding dehydrogenase AM488_25110 PF08240 Alcohol dehydrogenase GroES-like domain AM488_25115 PF02583 Metal-sensitive transcriptional repressor AM488_25120 PF01292 Prokaryotic cytochrome b561 AM488_25135 PF01638 HxlR-like helix-turn-helix AM488_25140 PF07690 Major Facilitator Superfamily AM488_25145 PF00962 Adenosine/AMP deaminase AM488_25150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM488_25150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM488_25160 PF00232 Glycosyl hydrolase family 1 AM488_25165 PF05321 Haemolysin expression modulating protein AM488_25170 PF10754 AM488_25170 AM488_25175 PF02508 AM488_25175 AM488_25180 PF04060 Putative Fe-S cluster AM488_25180 PF14697 4Fe-4S dicluster domain AM488_25185 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AM488_25185 PF10531 SLBB domain AM488_25185 PF12838 4Fe-4S dicluster domain AM488_25185 PF13375 RnfC Barrel sandwich hybrid domain AM488_25190 PF03116 AM488_25190 AM488_25195 PF04205 FMN-binding domain AM488_25200 PF02508 AM488_25200 AM488_25205 PF00633 Helix-hairpin-helix motif AM488_25205 PF00730 HhH-GPD superfamily base excision DNA repair protein AM488_25205 PF10576 Iron-sulfur binding domain of endonuclease III AM488_25215 PF00854 POT family AM488_25220 PF00043 Glutathione S-transferase, C-terminal domain AM488_25220 PF02798 Glutathione S-transferase, N-terminal domain AM488_25225 PF08543 Phosphomethylpyrimidine kinase AM488_25230 PF00579 tRNA synthetases class I (W and Y) AM488_25235 PF01243 Pyridoxamine 5'-phosphate oxidase AM488_25235 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AM488_25240 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme AM488_25245 PF03702 Uncharacterised protein family (UPF0075) AM488_25250 PF05433 AM488_25250 AM488_25255 PF00990 GGDEF domain AM488_25255 PF17158 AM488_25255 AM488_25260 PF01047 MarR family AM488_25265 PF07869 AM488_25265 AM488_25270 PF13437 HlyD family secretion protein AM488_25270 PF13533 Biotin-lipoyl like AM488_25275 PF04632 AM488_25275 AM488_25280 PF00080 Copper/zinc superoxide dismutase (SODC) AM488_25285 PF00248 Aldo/keto reductase family AM488_25290 PF06945 AM488_25290 AM488_25295 PF00440 Bacterial regulatory proteins, tetR family AM488_25295 PF16925 AM488_25295 AM488_25300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM488_25305 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_25310 PF00929 Exonuclease AM488_25315 PF00462 Glutaredoxin AM488_25320 PF00877 NlpC/P60 family AM488_25325 PF12833 Helix-turn-helix domain AM488_25330 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AM488_25330 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AM488_25335 PF07690 Major Facilitator Superfamily AM488_25345 PF00356 Bacterial regulatory proteins, lacI family AM488_25345 PF13377 Periplasmic binding protein-like domain AM488_25350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_25350 PF03466 LysR substrate binding domain AM488_25355 PF07690 Major Facilitator Superfamily AM488_25360 PF02353 Mycolic acid cyclopropane synthetase AM488_25365 PF00677 Lumazine binding domain AM488_25370 PF01554 MatE AM488_25380 PF03641 Possible lysine decarboxylase AM488_25425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_25425 PF03466 LysR substrate binding domain AM488_25435 PF00753 Metallo-beta-lactamase superfamily AM488_25440 PF00486 Transcriptional regulatory protein, C terminal AM488_25450 PF07338 Protein of unknown function (DUF1471) AM488_25455 PF00484 Carbonic anhydrase AM488_25460 PF01810 AM488_25460 AM488_25465 PF00455 AM488_25465 AM488_25465 PF08220 DeoR-like helix-turn-helix domain AM488_25470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_25475 PF00302 Chloramphenicol acetyltransferase AM488_25480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_25485 PF00528 Binding-protein-dependent transport system inner membrane component AM488_25490 PF00528 Binding-protein-dependent transport system inner membrane component AM488_25490 PF12911 AM488_25490 AM488_25495 PF00005 ABC transporter AM488_25495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM488_25500 PF00005 ABC transporter AM488_25500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM488_25510 PF05163 DinB family AM488_25520 PF07690 Major Facilitator Superfamily AM488_25525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_25525 PF03466 LysR substrate binding domain AM488_25530 PF00107 Zinc-binding dehydrogenase AM488_25530 PF08240 Alcohol dehydrogenase GroES-like domain AM488_25535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_25535 PF03466 LysR substrate binding domain AM488_25540 PF04828 Glutathione-dependent formaldehyde-activating enzyme AM488_25545 PF03171 2OG-Fe(II) oxygenase superfamily AM488_25545 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AM488_25555 PF09084 NMT1/THI5 like AM488_25560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_25560 PF03466 LysR substrate binding domain AM488_25570 PF00111 2Fe-2S iron-sulfur cluster binding domain AM488_25580 PF01042 Endoribonuclease L-PSP AM488_25585 PF02633 Creatinine amidohydrolase AM488_25590 PF09084 NMT1/THI5 like AM488_25595 PF00005 ABC transporter AM488_25600 PF00528 Binding-protein-dependent transport system inner membrane component AM488_25605 PF01565 FAD binding domain AM488_25620 PF04393 AM488_25620 AM488_25630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_25630 PF03466 LysR substrate binding domain AM488_25635 PF01144 Coenzyme A transferase AM488_25640 PF01144 Coenzyme A transferase AM488_25650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM488_25650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM488_25660 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_25665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_25665 PF03466 LysR substrate binding domain AM488_25670 PF03306 Alpha-acetolactate decarboxylase AM488_25675 PF00205 Thiamine pyrophosphate enzyme, central domain AM488_25675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM488_25675 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM488_25680 PF00106 short chain dehydrogenase AM488_25690 PF13302 Acetyltransferase (GNAT) domain AM488_25695 PF00873 AcrB/AcrD/AcrF family AM488_25700 PF13748 AM488_25700 AM488_25715 PF00072 Response regulator receiver domain AM488_25715 PF00486 Transcriptional regulatory protein, C terminal AM488_25720 PF00512 His Kinase A (phospho-acceptor) domain AM488_25720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_25725 PF14305 AM488_25725 AM488_25735 PF03544 Gram-negative bacterial TonB protein C-terminal AM488_25750 PF13673 Acetyltransferase (GNAT) domain AM488_25775 PF03918 Cytochrome C biogenesis protein AM488_25780 PF08534 Redoxin AM488_25785 PF01578 AM488_25785 AM488_25785 PF16327 AM488_25785 AM488_25790 PF03100 CcmE AM488_25795 PF04995 AM488_25795 AM488_25800 PF01578 AM488_25800 AM488_25805 PF03379 AM488_25805 AM488_25810 PF00005 ABC transporter AM488_25815 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AM488_25820 PF00732 GMC oxidoreductase AM488_25820 PF05199 GMC oxidoreductase AM488_25825 PF13618 AM488_25825 AM488_25830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_25835 PF00005 ABC transporter AM488_25840 PF00528 Binding-protein-dependent transport system inner membrane component AM488_25845 PF13416 Bacterial extracellular solute-binding protein AM488_25855 PF02615 Malate/L-lactate dehydrogenase AM488_25860 PF00384 Molybdopterin oxidoreductase AM488_25860 PF01568 Molydopterin dinucleotide binding domain AM488_25860 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM488_25865 PF01546 Peptidase family M20/M25/M40 AM488_25865 PF07687 Peptidase dimerisation domain AM488_25870 PF07690 Major Facilitator Superfamily AM488_25875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_25880 PF07690 Major Facilitator Superfamily AM488_25885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_25890 PF06353 AM488_25890 AM488_25895 PF00005 ABC transporter AM488_25900 PF00528 Binding-protein-dependent transport system inner membrane component AM488_25905 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM488_25910 PF01380 SIS domain AM488_25910 PF01418 Helix-turn-helix domain, rpiR family AM488_25915 PF01497 Periplasmic binding protein AM488_25920 PF01032 FecCD transport family AM488_25925 PF01032 FecCD transport family AM488_25930 PF00005 ABC transporter AM488_25935 PF00593 TonB dependent receptor AM488_25935 PF07715 TonB-dependent Receptor Plug Domain AM488_25940 PF00005 ABC transporter AM488_25945 PF00528 Binding-protein-dependent transport system inner membrane component AM488_25950 PF13379 NMT1-like family AM488_25955 PF09084 NMT1/THI5 like AM488_25960 PF02770 Acyl-CoA dehydrogenase, middle domain AM488_25960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM488_25960 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM488_25965 PF00296 Luciferase-like monooxygenase AM488_25970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_25970 PF03466 LysR substrate binding domain AM488_25975 PF05995 Cysteine dioxygenase type I AM488_25980 PF00581 Rhodanese-like domain AM488_25985 PF02578 Multi-copper polyphenol oxidoreductase laccase AM488_25990 PF07690 Major Facilitator Superfamily AM488_25995 PF00682 HMGL-like AM488_25995 PF07836 DmpG-like communication domain AM488_26000 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM488_26000 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AM488_26005 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM488_26010 PF00561 alpha/beta hydrolase fold AM488_26015 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AM488_26020 PF01494 FAD binding domain AM488_26025 PF01614 Bacterial transcriptional regulator AM488_26025 PF09339 IclR helix-turn-helix domain AM488_26030 PF01497 Periplasmic binding protein AM488_26035 PF01032 FecCD transport family AM488_26040 PF00005 ABC transporter AM488_26045 PF13531 Bacterial extracellular solute-binding protein AM488_26050 PF00899 ThiF family AM488_26050 PF08501 Shikimate dehydrogenase substrate binding domain AM488_26055 PF07690 Major Facilitator Superfamily AM488_26060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_26060 PF01261 Xylose isomerase-like TIM barrel AM488_26060 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal AM488_26065 PF00440 Bacterial regulatory proteins, tetR family AM488_26070 PF10965 AM488_26070 AM488_26080 PF00224 Pyruvate kinase, barrel domain AM488_26080 PF02887 Pyruvate kinase, alpha/beta domain AM488_26085 PF04728 Lipoprotein leucine-zipper AM488_26090 PF01476 LysM domain AM488_26090 PF03734 L,D-transpeptidase catalytic domain AM488_26095 PF02657 Fe-S metabolism associated domain AM488_26100 PF00266 Aminotransferase class-V AM488_26105 PF01458 Uncharacterized protein family (UPF0051) AM488_26110 PF00005 ABC transporter AM488_26115 PF01458 Uncharacterized protein family (UPF0051) AM488_26120 PF01521 Iron-sulphur cluster biosynthesis AM488_26130 PF07681 AM488_26130 AM488_26135 PF00440 Bacterial regulatory proteins, tetR family AM488_26135 PF14246 AefR-like transcriptional repressor, C-terminal region AM488_26140 PF01070 FMN-dependent dehydrogenase AM488_26150 PF16576 AM488_26150 AM488_26155 PF00440 Bacterial regulatory proteins, tetR family AM488_26160 PF13460 NADH(P)-binding AM488_26165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_26165 PF03466 LysR substrate binding domain AM488_26170 PF01497 Periplasmic binding protein AM488_26175 PF01032 FecCD transport family AM488_26180 PF00005 ABC transporter AM488_26185 PF07690 Major Facilitator Superfamily AM488_26190 PF01717 Cobalamin-independent synthase, Catalytic domain AM488_26195 PF08908 AM488_26195 AM488_26210 PF04226 AM488_26210 AM488_26225 PF03061 Thioesterase superfamily AM488_26230 PF01565 FAD binding domain AM488_26230 PF02913 FAD linked oxidases, C-terminal domain AM488_26230 PF13183 4Fe-4S dicluster domain AM488_26235 PF01594 AM488_26235 AM488_26245 PF00391 PEP-utilising enzyme, mobile domain AM488_26245 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AM488_26245 PF02896 PEP-utilising enzyme, TIM barrel domain AM488_26250 PF03618 AM488_26250 AM488_26255 PF00793 DAHP synthetase I family AM488_26260 PF10636 Hemin uptake protein hemP AM488_26265 PF02696 AM488_26265 AM488_26270 PF00877 NlpC/P60 family AM488_26275 PF00005 ABC transporter AM488_26280 PF00255 Glutathione peroxidase AM488_26285 PF03180 NLPA lipoprotein AM488_26290 PF01032 FecCD transport family AM488_26300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_26300 PF03466 LysR substrate binding domain AM488_26305 PF01266 FAD dependent oxidoreductase AM488_26310 PF01042 Endoribonuclease L-PSP AM488_26315 PF00216 Bacterial DNA-binding protein AM488_26320 PF01588 Putative tRNA binding domain AM488_26320 PF03147 Ferredoxin-fold anticodon binding domain AM488_26320 PF03483 B3/4 domain AM488_26320 PF03484 tRNA synthetase B5 domain AM488_26325 PF01409 tRNA synthetases class II core domain (F) AM488_26325 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AM488_26335 PF00453 Ribosomal protein L20 AM488_26340 PF01632 Ribosomal protein L35 AM488_26345 PF00707 Translation initiation factor IF-3, C-terminal domain AM488_26345 PF05198 Translation initiation factor IF-3, N-terminal domain AM488_26350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM488_26350 PF02824 TGS domain AM488_26350 PF03129 Anticodon binding domain AM488_26350 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM488_26360 PF04338 Protein of unknown function, DUF481 AM488_26365 PF00294 pfkB family carbohydrate kinase AM488_26370 PF11080 Protein of unknown function (DUF2622) AM488_26375 PF03881 Fructosamine kinase AM488_26380 PF03544 Gram-negative bacterial TonB protein C-terminal AM488_26380 PF16031 AM488_26380 AM488_26385 PF03795 YCII-related domain AM488_26390 PF04264 YceI-like domain AM488_26400 PF13091 PLD-like domain AM488_26400 PF13396 AM488_26400 AM488_26405 PF04269 Protein of unknown function, DUF440 AM488_26410 PF00520 Ion transport protein AM488_26415 PF00005 ABC transporter AM488_26415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM488_26420 PF00005 ABC transporter AM488_26420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM488_26425 PF00528 Binding-protein-dependent transport system inner membrane component AM488_26425 PF12911 AM488_26425 AM488_26430 PF00528 Binding-protein-dependent transport system inner membrane component AM488_26435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM488_26440 PF01914 AM488_26440 AM488_26450 PF00171 Aldehyde dehydrogenase family AM488_26450 PF00465 Iron-containing alcohol dehydrogenase AM488_26455 PF00265 Thymidine kinase AM488_26460 PF00816 H-NS histone family AM488_26465 PF00483 Nucleotidyl transferase AM488_26470 PF00072 Response regulator receiver domain AM488_26475 PF01734 Patatin-like phospholipase AM488_26480 PF02810 SEC-C motif AM488_26485 PF00551 Formyl transferase AM488_26485 PF01842 ACT domain AM488_26515 PF01037 AsnC family AM488_26515 PF13412 Winged helix-turn-helix DNA-binding AM488_26520 PF00892 EamA-like transporter family AM488_26525 PF02665 Nitrate reductase gamma subunit AM488_26530 PF02613 Nitrate reductase delta subunit AM488_26535 PF13247 4Fe-4S dicluster domain AM488_26535 PF14711 Respiratory nitrate reductase beta C-terminal AM488_26540 PF00384 Molybdopterin oxidoreductase AM488_26540 PF01568 Molydopterin dinucleotide binding domain AM488_26540 PF14710 Respiratory nitrate reductase alpha N-terminal AM488_26545 PF07690 Major Facilitator Superfamily AM488_26550 PF00672 HAMP domain AM488_26550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_26550 PF07730 Histidine kinase AM488_26550 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AM488_26555 PF00072 Response regulator receiver domain AM488_26555 PF00196 Bacterial regulatory proteins, luxR family AM488_26560 PF11924 Protein of unknown function (DUF3442) AM488_26565 PF00384 Molybdopterin oxidoreductase AM488_26565 PF01568 Molydopterin dinucleotide binding domain AM488_26565 PF04324 BFD-like [2Fe-2S] binding domain AM488_26565 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM488_26570 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM488_26570 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM488_26570 PF04324 BFD-like [2Fe-2S] binding domain AM488_26570 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM488_26570 PF13806 Rieske-like [2Fe-2S] domain AM488_26575 PF00005 ABC transporter AM488_26580 PF00528 Binding-protein-dependent transport system inner membrane component AM488_26585 PF13379 NMT1-like family AM488_26590 PF03861 ANTAR domain AM488_26590 PF08376 Nitrate and nitrite sensing AM488_26595 PF02635 DsrE/DsrF-like family AM488_26600 PF08980 Domain of unknown function (DUF1883) AM488_26605 PF04752 AM488_26605 AM488_26610 PF06150 ChaB AM488_26615 PF01699 Sodium/calcium exchanger protein AM488_26620 PF00793 DAHP synthetase I family AM488_26625 PF13369 AM488_26625 AM488_26625 PF13371 Tetratricopeptide repeat AM488_26630 PF04247 AM488_26630 AM488_26635 PF13847 Methyltransferase domain AM488_26640 PF00472 RF-1 domain AM488_26640 PF03462 PCRF domain AM488_26645 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AM488_26645 PF01488 Shikimate / quinate 5-dehydrogenase AM488_26645 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AM488_26650 PF03550 Outer membrane lipoprotein LolB AM488_26655 PF00288 GHMP kinases N terminal domain AM488_26655 PF08544 GHMP kinases C terminal AM488_26665 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AM488_26665 PF14572 Phosphoribosyl synthetase-associated domain AM488_26670 PF00916 AM488_26670 AM488_26670 PF01740 STAS domain AM488_26675 PF07739 TipAS antibiotic-recognition domain AM488_26675 PF13411 MerR HTH family regulatory protein AM488_26680 PF10762 AM488_26680 AM488_26685 PF01195 Peptidyl-tRNA hydrolase AM488_26690 PF01926 50S ribosome-binding GTPase AM488_26690 PF06071 Protein of unknown function (DUF933) AM488_26695 PF08956 Domain of unknown function (DUF1869) AM488_26700 PF13407 Periplasmic binding protein domain AM488_26705 PF06812 AM488_26705 AM488_26705 PF12486 AM488_26705 AM488_26710 PF04965 Gene 25-like lysozyme AM488_26715 PF12790 Type VI secretion lipoprotein AM488_26720 PF06996 AM488_26720 AM488_26725 PF05947 AM488_26725 AM488_26730 PF06744 AM488_26730 AM488_26730 PF06761 AM488_26730 AM488_26740 PF05488 PAAR motif AM488_26760 PF03781 Sulfatase-modifying factor enzyme 1 AM488_26765 PF03781 Sulfatase-modifying factor enzyme 1 AM488_26770 PF03781 Sulfatase-modifying factor enzyme 1 AM488_26800 PF06958 S-type Pyocin AM488_26825 PF13737 AM488_26825 AM488_26830 PF06958 S-type Pyocin AM488_26835 PF05954 Phage late control gene D protein (GPD) AM488_26835 PF10106 AM488_26835 AM488_26835 PF13296 AM488_26835 AM488_26840 PF00691 OmpA family AM488_26845 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) AM488_26850 PF05936 AM488_26850 AM488_26860 PF06094 AIG2-like family AM488_26865 PF09831 AM488_26865 AM488_26870 PF00849 RNA pseudouridylate synthase AM488_26875 PF00313 'Cold-shock' DNA-binding domain AM488_26880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_26880 PF03466 LysR substrate binding domain AM488_26885 PF13531 Bacterial extracellular solute-binding protein AM488_26890 PF07690 Major Facilitator Superfamily AM488_26895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_26895 PF03466 LysR substrate binding domain AM488_26900 PF00583 Acetyltransferase (GNAT) family AM488_26905 PF01293 Phosphoenolpyruvate carboxykinase AM488_26910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_26910 PF03466 LysR substrate binding domain AM488_26915 PF00005 ABC transporter AM488_26920 PF00005 ABC transporter AM488_26920 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM488_26925 PF02653 AM488_26925 AM488_26925 PF11862 AM488_26925 AM488_26930 PF02653 AM488_26930 AM488_26935 PF13458 Periplasmic binding protein AM488_26940 PF01228 Glycine radical AM488_26940 PF02901 Pyruvate formate lyase AM488_26945 PF00871 Acetokinase family AM488_26950 PF03222 Tryptophan/tyrosine permease family AM488_26955 PF00291 Pyridoxal-phosphate dependent enzyme AM488_26960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_26960 PF03466 LysR substrate binding domain AM488_26980 PF00487 AM488_26980 AM488_26985 PF00227 Proteasome subunit AM488_26990 PF01841 Transglutaminase-like superfamily AM488_26990 PF08379 AM488_26990 AM488_26995 PF04168 AM488_26995 AM488_27000 PF14403 AM488_27000 AM488_27010 PF01204 Trehalase AM488_27015 PF00593 TonB dependent receptor AM488_27015 PF07715 TonB-dependent Receptor Plug Domain AM488_27020 PF01464 Transglycosylase SLT domain AM488_27025 PF02016 LD-carboxypeptidase AM488_27030 PF00999 Sodium/hydrogen exchanger family AM488_27030 PF02080 TrkA-C domain AM488_27030 PF03471 Transporter associated domain AM488_27035 PF00842 Alanine racemase, C-terminal domain AM488_27035 PF01168 Alanine racemase, N-terminal domain AM488_27040 PF07916 AM488_27040 AM488_27065 PF10411 Disulfide bond isomerase protein N-terminus AM488_27065 PF13098 Thioredoxin-like domain AM488_27080 PF01323 DSBA-like thioredoxin domain AM488_27100 PF13358 DDE superfamily endonuclease AM488_27100 PF13384 Homeodomain-like domain AM488_27100 PF13592 AM488_27100 AM488_27125 PF13518 Helix-turn-helix domain AM488_27135 PF13565 AM488_27135 AM488_27145 PF08867 AM488_27145 AM488_27165 PF00816 H-NS histone family AM488_27170 PF13091 PLD-like domain AM488_27175 PF00565 Staphylococcal nuclease homologue AM488_27180 PF06666 AM488_27180 AM488_27190 PF06952 AM488_27190 AM488_27210 PF12710 haloacid dehalogenase-like hydrolase AM488_27225 PF02342 TerD domain AM488_27225 PF10138 AM488_27225 AM488_27230 PF02342 TerD domain AM488_27235 PF02342 TerD domain AM488_27240 PF03741 AM488_27240 AM488_27245 PF05099 Tellurite resistance protein TerB AM488_27250 PF02342 TerD domain AM488_27255 PF02342 TerD domain AM488_27260 PF15632 AM488_27260 AM488_27265 PF12500 AM488_27265 AM488_27265 PF15609 AM488_27265 AM488_27275 PF11202 AM488_27275 AM488_27275 PF15608 AM488_27275 AM488_27280 PF15617 AM488_27280 AM488_27285 PF14020 AM488_27285 AM488_27295 PF00092 von Willebrand factor type A domain AM488_27300 PF02342 TerD domain AM488_27305 PF00092 von Willebrand factor type A domain AM488_27310 PF00092 von Willebrand factor type A domain AM488_27310 PF15616 AM488_27310 AM488_27315 PF13672 Protein phosphatase 2C AM488_27320 PF00069 Protein kinase domain AM488_27330 PF10008 AM488_27330 AM488_27335 PF01527 Transposase AM488_27340 PF05717 AM488_27340 AM488_27345 PF03050 AM488_27345 AM488_27345 PF13005 AM488_27345 AM488_27345 PF13007 AM488_27345 AM488_27345 PF13817 AM488_27345 AM488_27355 PF01527 Transposase AM488_27360 PF05717 AM488_27360 AM488_27365 PF03050 AM488_27365 AM488_27365 PF13005 AM488_27365 AM488_27365 PF13007 AM488_27365 AM488_27365 PF13817 AM488_27365 AM488_27370 PF01548 AM488_27370 AM488_27370 PF02371 AM488_27370 AM488_27375 PF01526 AM488_27375 AM488_27380 PF12146 Putative lysophospholipase AM488_27385 PF00892 EamA-like transporter family AM488_27410 PF01548 AM488_27410 AM488_27410 PF02371 AM488_27410 AM488_27415 PF01526 AM488_27415 AM488_27415 PF13700 AM488_27415 AM488_27420 PF00239 Resolvase, N terminal domain AM488_27425 PF00756 Putative esterase AM488_27430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM488_27435 PF00107 Zinc-binding dehydrogenase AM488_27435 PF08240 Alcohol dehydrogenase GroES-like domain AM488_27440 PF02583 Metal-sensitive transcriptional repressor AM488_27450 PF13561 Enoyl-(Acyl carrier protein) reductase AM488_27455 PF01323 DSBA-like thioredoxin domain AM488_27460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM488_27465 PF00085 Thioredoxin AM488_27470 PF02627 Carboxymuconolactone decarboxylase family AM488_27475 PF00440 Bacterial regulatory proteins, tetR family AM488_27480 PF02566 OsmC-like protein AM488_27485 PF00239 Resolvase, N terminal domain AM488_27485 PF02796 Helix-turn-helix domain of resolvase AM488_27500 PF13610 AM488_27500 AM488_27505 PF00565 Staphylococcal nuclease homologue AM488_27515 PF03050 AM488_27515 AM488_27520 PF07883 Cupin domain AM488_27525 PF06778 Chlorite dismutase AM488_27540 PF13610 AM488_27540 AM488_27550 PF01548 AM488_27550 AM488_27550 PF02371 AM488_27550 AM488_27555 PF07338 Protein of unknown function (DUF1471) AM488_27560 PF00440 Bacterial regulatory proteins, tetR family AM488_27565 PF07338 Protein of unknown function (DUF1471) AM488_27570 PF04224 AM488_27570 AM488_27575 PF01641 SelR domain AM488_27580 PF01625 Peptide methionine sulfoxide reductase AM488_27595 PF00239 Resolvase, N terminal domain AM488_27595 PF13384 Homeodomain-like domain AM488_27605 PF01548 AM488_27605 AM488_27605 PF02371 AM488_27605 AM488_27615 PF00577 Outer membrane usher protein AM488_27615 PF13953 PapC C-terminal domain AM488_27615 PF13954 PapC N-terminal domain AM488_27620 PF00419 Fimbrial protein AM488_27625 PF01850 PIN domain AM488_27630 PF04014 Antidote-toxin recognition MazE AM488_27645 PF07728 AAA domain (dynein-related subfamily) AM488_27655 PF01695 IstB-like ATP binding protein AM488_27660 PF00665 Integrase core domain AM488_27660 PF13936 Helix-turn-helix domain AM488_27700 PF01695 IstB-like ATP binding protein AM488_27705 PF00665 Integrase core domain AM488_27720 PF10008 AM488_27720 AM488_27730 PF08681 Protein of unknown function (DUF1778) AM488_27770 PF05321 Haemolysin expression modulating protein AM488_27780 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM488_27785 PF00589 Phage integrase family AM488_27805 PF05472 DNA replication terminus site-binding protein (Ter protein) AM488_27840 PF13362 Toprim domain AM488_27850 PF00092 von Willebrand factor type A domain AM488_27850 PF01391 Collagen triple helix repeat (20 copies) AM488_27855 PF11348 AM488_27855 AM488_27860 PF07728 AAA domain (dynein-related subfamily) AM488_27880 PF13245 Part of AAA domain AM488_27880 PF13361 UvrD-like helicase C-terminal domain AM488_27890 PF06986 AM488_27890 AM488_27895 PF06834 AM488_27895 AM488_27900 PF09673 AM488_27900 AM488_27905 PF10502 Signal peptidase, peptidase S26 AM488_27910 PF13750 AM488_27910 AM488_27930 PF00149 Calcineurin-like phosphoesterase AM488_27950 PF11130 AM488_27950 AM488_27955 PF09676 AM488_27955 AM488_27970 PF03743 Bacterial conjugation TrbI-like protein AM488_27980 PF06586 AM488_27980 AM488_27985 PF05309 AM488_27985 AM488_27990 PF07178 AM488_27990 AM488_28025 PF12245 Bacterial Ig-like domain (group 3) AM488_28025 PF13750 AM488_28025 AM488_28025 PF13752 AM488_28025 AM488_28060 PF13614 AAA domain AM488_28065 PF08775 ParB family AM488_28075 PF12245 Bacterial Ig-like domain (group 3) AM488_28075 PF13750 AM488_28075 AM488_28075 PF13752 AM488_28075 AM488_28080 PF12245 Bacterial Ig-like domain (group 3) AM488_28080 PF13750 AM488_28080 AM488_28080 PF13752 AM488_28080 AM488_28085 PF12245 Bacterial Ig-like domain (group 3) AM488_28085 PF13750 AM488_28085 AM488_28085 PF13752 AM488_28085 AM488_28120 PF13737 AM488_28120 AM488_28150 PF08808 AM488_28150 AM488_28175 PF01695 IstB-like ATP binding protein AM488_28180 PF00145 C-5 cytosine-specific DNA methylase AM488_28190 PF13737 AM488_28190 AM488_28210 PF00111 2Fe-2S iron-sulfur cluster binding domain AM488_28215 PF05015 Plasmid maintenance system killer protein AM488_28240 PF13737 AM488_28240 AM488_28250 PF00920 Dehydratase family AM488_28255 PF00291 Pyridoxal-phosphate dependent enzyme AM488_28255 PF00585 C-terminal regulatory domain of Threonine dehydratase AM488_28260 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_28265 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM488_28270 PF03611 AM488_28270 AM488_28275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM488_28275 PF00874 PRD domain AM488_28275 PF05043 Mga helix-turn-helix domain AM488_28280 PF00596 Class II Aldolase and Adducin N-terminal domain AM488_28285 PF02733 Dak1 domain AM488_28290 PF02734 DAK2 domain AM488_28295 PF00381 PTS HPr component phosphorylation site AM488_28300 PF07055 Enoyl reductase FAD binding domain AM488_28300 PF12241 Trans-2-enoyl-CoA reductase catalytic region AM488_28300 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AM488_28305 PF02734 DAK2 domain AM488_28310 PF02733 Dak1 domain AM488_28315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_28315 PF03466 LysR substrate binding domain AM488_28320 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AM488_28320 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AM488_28330 PF13737 AM488_28330 AM488_28340 PF01548 AM488_28340 AM488_28340 PF02371 AM488_28340 AM488_28345 PF13708 AM488_28345 AM488_28400 PF13737 AM488_28400 AM488_28410 PF04448 AM488_28410 AM488_28440 PF13358 DDE superfamily endonuclease AM488_28440 PF13384 Homeodomain-like domain AM488_28440 PF13592 AM488_28440 AM488_28485 PF01548 AM488_28485 AM488_28485 PF02371 AM488_28485 AM488_28505 PF08798 CRISPR associated protein AM488_28510 PF00270 DEAD/DEAH box helicase AM488_28510 PF13307 Helicase C-terminal domain AM488_28535 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM488_28545 PF00717 Peptidase S24-like AM488_28550 PF00817 impB/mucB/samB family AM488_28550 PF11799 impB/mucB/samB family C-terminal domain AM488_28550 PF13438 AM488_28550 AM488_28555 PF09722 AM488_28555 AM488_28560 PF08808 AM488_28560 AM488_28580 PF00665 Integrase core domain AM488_28580 PF13518 Helix-turn-helix domain AM488_28585 PF00665 Integrase core domain AM488_28585 PF01527 Transposase AM488_28585 PF13276 AM488_28585 AM488_28590 PF00665 Integrase core domain AM488_28590 PF13518 Helix-turn-helix domain AM488_28600 PF04076 Bacterial OB fold (BOF) protein AM488_28605 PF03824 AM488_28605 AM488_28610 PF02583 Metal-sensitive transcriptional repressor AM488_28615 PF07690 Major Facilitator Superfamily AM488_28640 PF09828 AM488_28640 AM488_28645 PF02417 AM488_28645 AM488_28655 PF13795 AM488_28655 AM488_28665 PF04221 RelB antitoxin AM488_28670 PF05016 Plasmid stabilisation system protein AM488_28675 PF01848 AM488_28675 AM488_28720 PF08378 AM488_28720 AM488_28725 PF01343 Peptidase family S49 AM488_28730 PF14348 AM488_28730 AM488_28740 PF10412 Type IV secretion-system coupling protein DNA-binding domain AM488_28740 PF12846 AAA-like domain AM488_28745 PF07514 Putative helicase AM488_28780 PF13728 F plasmid transfer operon protein AM488_28785 PF06122 AM488_28785 AM488_28805 PF04352 ProQ/FINO family AM488_28805 PF12602 Fertility inhibition protein N terminal AM488_28810 PF05857 AM488_28810 AM488_28815 PF07057 DNA helicase TraI AM488_28815 PF08751 TrwC relaxase AM488_28815 PF13604 AAA domain AM488_28820 PF10412 Type IV secretion-system coupling protein DNA-binding domain AM488_28820 PF12615 AM488_28820 AM488_28825 PF05818 AM488_28825 AM488_28835 PF07916 AM488_28835 AM488_28840 PF06122 AM488_28840 AM488_28850 PF13728 F plasmid transfer operon protein AM488_28855 PF09679 AM488_28855 AM488_28860 PF13728 F plasmid transfer operon protein AM488_28875 PF11100 AM488_28875 AM488_28880 PF06986 AM488_28880 AM488_28885 PF09673 AM488_28885 AM488_28890 PF06834 AM488_28890 AM488_28895 PF12477 AM488_28895 AM488_28900 PF09677 AM488_28900 AM488_28905 PF11130 AM488_28905 AM488_28945 PF09676 AM488_28945 AM488_28950 PF07296 AM488_28950 AM488_28955 PF03743 Bacterial conjugation TrbI-like protein AM488_28960 PF06586 AM488_28960 AM488_28965 PF05309 AM488_28965 AM488_28970 PF07178 AM488_28970 AM488_28975 PF05513 AM488_28975 AM488_28980 PF05509 AM488_28980 AM488_28990 PF05261 TraM protein, DNA-binding AM488_28995 PF01464 Transglycosylase SLT domain AM488_29005 PF06067 AM488_29005 AM488_29025 PF01381 Helix-turn-helix AM488_29030 PF13560 Helix-turn-helix domain AM488_29035 PF05973 AM488_29035 AM488_29070 PF01848 AM488_29070 AM488_29075 PF00665 Integrase core domain AM488_29075 PF13518 Helix-turn-helix domain AM488_29095 PF06952 AM488_29095 AM488_29100 PF06290 Plasmid SOS inhibition protein (PsiB) AM488_29105 PF02195 ParB-like nuclease domain AM488_29110 PF06006 Bacterial protein of unknown function (DUF905) AM488_29115 PF00436 Single-strand binding protein family AM488_29130 PF05175 Methyltransferase small domain AM488_29135 PF12083 AM488_29135 AM488_29160 PF06440 DNA polymerase III, theta subunit AM488_29165 PF03230 Antirestriction protein AM488_29180 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM488_29190 PF00717 Peptidase S24-like AM488_29195 PF00817 impB/mucB/samB family AM488_29195 PF11799 impB/mucB/samB family C-terminal domain AM488_29195 PF13438 AM488_29195 AM488_29220 PF02195 ParB-like nuclease domain AM488_29225 PF13614 AAA domain AM488_29230 PF01051 Initiator Replication protein AM488_29240 PF00589 Phage integrase family AM488_29245 PF00990 GGDEF domain AM488_29245 PF01590 GAF domain AM488_29250 PF00563 EAL domain AM488_29260 PF13737 AM488_29260 AM488_29270 PF00563 EAL domain AM488_29270 PF12792 AM488_29270 AM488_29275 PF10011 Predicted membrane protein (DUF2254) AM488_29280 PF02028 BCCT family transporter AM488_29315 PF00512 His Kinase A (phospho-acceptor) domain AM488_29315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_29320 PF00072 Response regulator receiver domain AM488_29320 PF00486 Transcriptional regulatory protein, C terminal AM488_29325 PF02321 Outer membrane efflux protein AM488_29330 PF11604 Copper binding periplasmic protein CusF AM488_29335 PF16576 AM488_29335 AM488_29340 PF00873 AcrB/AcrD/AcrF family AM488_29345 PF04214 AM488_29345 AM488_29350 PF00122 E1-E2 ATPase AM488_29350 PF00702 haloacid dehalogenase-like hydrolase AM488_29350 PF04945 YHS domain AM488_29355 PF11666 AM488_29355 AM488_29360 PF01551 Peptidase family M23 AM488_29370 PF00394 Multicopper oxidase AM488_29370 PF07731 Multicopper oxidase AM488_29370 PF07732 Multicopper oxidase AM488_29375 PF05275 AM488_29375 AM488_29380 PF04234 CopC domain AM488_29385 PF05425 AM488_29385 AM488_29390 PF00072 Response regulator receiver domain AM488_29390 PF00486 Transcriptional regulatory protein, C terminal AM488_29395 PF00512 His Kinase A (phospho-acceptor) domain AM488_29395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_29415 PF00230 Major intrinsic protein AM488_29420 PF13420 Acetyltransferase (GNAT) domain AM488_29425 PF12840 Helix-turn-helix domain AM488_29430 PF03358 NADPH-dependent FMN reductase AM488_29435 PF04542 Sigma-70 region 2 AM488_29435 PF08281 Sigma-70, region 4 AM488_29440 PF06953 Arsenical resistance operon trans-acting repressor ArsD AM488_29450 PF00583 Acetyltransferase (GNAT) family AM488_29455 PF03960 ArsC family AM488_29460 PF02040 AM488_29460 AM488_29465 PF02374 Anion-transporting ATPase AM488_29470 PF06953 Arsenical resistance operon trans-acting repressor ArsD AM488_29475 PF01022 Bacterial regulatory protein, arsR family AM488_29500 PF05321 Haemolysin expression modulating protein AM488_29515 PF08681 Protein of unknown function (DUF1778) AM488_29520 PF13673 Acetyltransferase (GNAT) domain AM488_29525 PF00665 Integrase core domain AM488_29525 PF13565 AM488_29525 AM488_29535 PF01435 Peptidase family M48 AM488_29540 PF00990 GGDEF domain AM488_29540 PF06146 AM488_29540 AM488_29555 PF00004 ATPase family associated with various cellular activities (AAA) AM488_29555 PF02861 Clp amino terminal domain AM488_29555 PF07724 AAA domain (Cdc48 subfamily) AM488_29555 PF10431 C-terminal, D2-small domain, of ClpB protein AM488_29560 PF00011 Hsp20/alpha crystallin family AM488_29565 PF12728 Helix-turn-helix domain AM488_29585 PF01609 Transposase DDE domain AM488_29585 PF05598 AM488_29585 AM488_29605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM488_29605 PF03466 LysR substrate binding domain AM488_29610 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM488_29610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM488_29615 PF00528 Binding-protein-dependent transport system inner membrane component AM488_29620 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AM488_29625 PF00005 ABC transporter AM488_29635 PF13610 AM488_29635 AM488_29640 PF01548 AM488_29640 AM488_29640 PF02371 AM488_29640 AM488_29645 PF08240 Alcohol dehydrogenase GroES-like domain AM488_29645 PF13602 Zinc-binding dehydrogenase AM488_29655 PF00356 Bacterial regulatory proteins, lacI family AM488_29655 PF13377 Periplasmic binding protein-like domain AM488_29660 PF00703 Glycosyl hydrolases family 2 AM488_29660 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AM488_29660 PF02837 Glycosyl hydrolases family 2, sugar binding domain AM488_29660 PF02929 Beta galactosidase small chain AM488_29660 PF16353 AM488_29660 AM488_29665 PF01306 LacY proton/sugar symporter AM488_29675 PF05099 Tellurite resistance protein TerB AM488_29675 PF13208 AM488_29675 AM488_29675 PF15615 AM488_29675 AM488_29680 PF10923 AM488_29680 AM488_29685 PF00270 DEAD/DEAH box helicase AM488_29685 PF00271 Helicase conserved C-terminal domain AM488_29700 PF02387 AM488_29700 AM488_29705 PF08048 AM488_29705 AM488_29710 PF10723 Replication regulatory protein RepB AM488_29715 PF13091 PLD-like domain AM488_29720 PF01320 Colicin immunity protein / pyocin immunity protein AM488_29730 PF05101 AM488_29730 AM488_29735 PF03135 AM488_29735 AM488_29740 PF07996 Type IV secretion system proteins AM488_29750 PF04610 AM488_29750 AM488_29755 PF04335 VirB8 protein AM488_29760 PF03524 Conjugal transfer protein AM488_29765 PF03743 Bacterial conjugation TrbI-like protein AM488_29775 PF00437 Type II/IV secretion system protein AM488_29785 PF02534 Type IV secretory system Conjugative DNA transfer AM488_29795 PF00565 Staphylococcal nuclease homologue AM488_29820 PF01131 DNA topoisomerase AM488_29820 PF01396 AM488_29820 AM488_29820 PF01751 Toprim domain AM488_29820 PF13342 AM488_29820 AM488_29825 PF00226 DnaJ domain AM488_29855 PF07362 Post-segregation antitoxin CcdA AM488_29860 PF01845 CcdB protein AM488_29890 PF00589 Phage integrase family AM488_29895 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AM488_29915 PF17273 AM488_29915 AM488_29920 PF05713 AM488_29920 AM488_29930 PF10723 Replication regulatory protein RepB AM488_29935 PF02387 AM488_29935 AM488_29940 PF00072 Response regulator receiver domain AM488_29940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM488_29945 PF00174 Oxidoreductase molybdopterin binding domain AM488_29955 PF00072 Response regulator receiver domain AM488_29955 PF08667 BetR domain AM488_29960 PF05509 AM488_29960 AM488_29965 PF01464 Transglycosylase SLT domain AM488_29980 PF01815 Rop protein AM488_29985 PF12728 Helix-turn-helix domain AM488_30005 PF05015 Plasmid maintenance system killer protein AM488_30010 PF01381 Helix-turn-helix AM488_30015 PF13391 AM488_30015 AM488_30025 PF00239 Resolvase, N terminal domain AM488_30025 PF02796 Helix-turn-helix domain of resolvase AM488_30035 PF00589 Phage integrase family AM488_30035 PF13495 Phage integrase, N-terminal SAM-like domain AM488_30040 PF00186 Dihydrofolate reductase AM488_30045 PF05713 AM488_30045 AM488_30055 PF13610 AM488_30055 AM488_30070 PF09019 EcoRII C terminal AM488_30070 PF09217 Restriction endonuclease EcoRII, N-terminal AM488_30075 PF00145 C-5 cytosine-specific DNA methylase AM488_30090 PF04471 Restriction endonuclease AM488_30095 PF13610 AM488_30095 AM488_30105 PF11799 impB/mucB/samB family C-terminal domain AM488_30105 PF13438 AM488_30105 AM488_30115 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AM488_30140 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM488_30140 PF08388 AM488_30140 AM488_30155 PF01548 AM488_30155 AM488_30155 PF02371 AM488_30155 AM488_30170 PF13610 AM488_30170 AM488_30180 PF01526 AM488_30180 AM488_30180 PF13700 AM488_30180 AM488_30185 PF01548 AM488_30185 AM488_30185 PF02371 AM488_30185 AM488_30200 PF00809 Pterin binding enzyme AM488_30205 PF01636 Phosphotransferase enzyme family AM488_30210 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AM488_30215 PF14319 AM488_30215 AM488_30225 PF00239 Resolvase, N terminal domain AM488_30225 PF02796 Helix-turn-helix domain of resolvase AM488_30235 PF13610 AM488_30235 AM488_30245 PF00302 Chloramphenicol acetyltransferase AM488_30255 PF13610 AM488_30255 AM488_30270 PF13354 Beta-lactamase enzyme family AM488_30275 PF13701 AM488_30275 AM488_30285 PF00239 Resolvase, N terminal domain AM488_30285 PF02796 Helix-turn-helix domain of resolvase AM488_30290 PF13354 Beta-lactamase enzyme family AM488_30295 PF02522 Aminoglycoside 3-N-acetyltransferase AM488_30300 PF13238 AAA domain AM488_30315 PF13020 AM488_30315 AM488_30320 PF05598 AM488_30320 AM488_30320 PF13751 AM488_30320 AM488_30325 PF13354 Beta-lactamase enzyme family AM488_30330 PF08240 Alcohol dehydrogenase GroES-like domain AM488_30335 PF07690 Major Facilitator Superfamily AM488_30340 PF00440 Bacterial regulatory proteins, tetR family AM488_30340 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AM488_30345 PF13610 AM488_30345 AM488_30355 PF13238 AAA domain AM488_30360 PF02522 Aminoglycoside 3-N-acetyltransferase AM488_30365 PF13610 AM488_30365 AM488_30375 PF00905 Penicillin binding protein transpeptidase domain AM488_30380 PF13523 Acetyltransferase (GNAT) domain AM488_30385 PF13610 AM488_30385 AM488_30395 PF00239 Resolvase, N terminal domain AM488_30395 PF13384 Homeodomain-like domain AM488_30400 PF01526 AM488_30400 AM488_30400 PF13700 AM488_30400 AM488_30415 PF00805 Pentapeptide repeats (8 copies) AM488_30415 PF13599 Pentapeptide repeats (9 copies) AM488_30425 PF13610 AM488_30425 AM488_30440 PF11140 AM488_30440 AM488_30475 PF01051 Initiator Replication protein AM488_30500 PF13610 AM488_30500 AM488_30505 PF01051 Initiator Replication protein AM488_30515 PF00589 Phage integrase family AM488_30540 PF13610 AM488_30540 AM488_30545 PF01936 NYN domain