locus-tag class description A3P31_00020 PF13614 AAA domain A3P31_00045 PF00589 Phage integrase family A3P31_00050 PF00436 Single-strand binding protein family A3P31_00065 PF13391 HNH endonuclease A3P31_00070 PF00145 C-5 cytosine-specific DNA methylase A3P31_00080 PF13936 Helix-turn-helix domain A3P31_00095 PF13614 AAA domain A3P31_00120 PF00589 Phage integrase family A3P31_00125 PF00436 Single-strand binding protein family A3P31_00170 PF06970 Replication initiator protein A (RepA) N-terminus A3P31_00170 PF18008 Replication initiator protein A C-terminal domain A3P31_00230 PF06970 Replication initiator protein A (RepA) N-terminus A3P31_00230 PF18008 Replication initiator protein A C-terminal domain A3P31_00270 PF13817 IS66 C-terminal element A3P31_00270 PF13007 Transposase C of IS166 homeodomain A3P31_00270 PF13005 zinc-finger binding domain of transposase IS66 A3P31_00270 PF03050 Transposase IS66 family A3P31_00490 PF00910 RNA helicase A3P31_00490 PF01719 Plasmid replication protein A3P31_00540 PF00899 ThiF family A3P31_00575 PF00480 ROK family A3P31_00580 PF00772 DnaB-like helicase N terminal domain A3P31_00580 PF03796 DnaB-like helicase C terminal domain A3P31_00585 PF03948 Ribosomal protein L9, C-terminal domain A3P31_00585 PF01281 Ribosomal protein L9, N-terminal domain A3P31_00590 PF01368 DHH family A3P31_00590 PF02272 DHHA1 domain A3P31_00600 PF01084 Ribosomal protein S18 A3P31_00605 PF00436 Single-strand binding protein family A3P31_00610 PF01250 Ribosomal protein S6 A3P31_00615 PF00521 DNA gyrase/topoisomerase IV, subunit A A3P31_00615 PF03989 DNA gyrase C-terminal domain, beta-propeller A3P31_00620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3P31_00620 PF01751 Toprim domain A3P31_00620 PF00986 DNA gyrase B subunit, carboxyl terminus A3P31_00620 PF00204 DNA gyrase B A3P31_00625 PF02463 RecF/RecN/SMC N terminal domain A3P31_00635 PF00712 DNA polymerase III beta subunit, N-terminal domain A3P31_00635 PF02767 DNA polymerase III beta subunit, central domain A3P31_00635 PF02768 DNA polymerase III beta subunit, C-terminal domain A3P31_00640 PF00308 Bacterial dnaA protein A3P31_00640 PF08299 Bacterial dnaA protein helix-turn-helix A3P31_00645 PF00468 Ribosomal protein L34 A3P31_00650 PF00825 Ribonuclease P A3P31_00655 PF02096 60Kd inner membrane protein A3P31_00660 PF10396 GTP-binding protein TrmE N-terminus A3P31_00660 PF12631 MnmE helical domain A3P31_00660 PF01926 50S ribosome-binding GTPase A3P31_00665 PF01134 Glucose inhibited division protein A A3P31_00665 PF13932 GidA associated domain A3P31_00670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A3P31_00670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A3P31_00670 PF00205 Thiamine pyrophosphate enzyme, central domain A3P31_00675 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain A3P31_00675 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase A3P31_00680 PF00654 Voltage gated chloride channel A3P31_00685 PF00488 MutS domain V A3P31_00685 PF01713 Smr domain A3P31_00700 PF00083 Sugar (and other) transporter A3P31_00705 PF13936 Helix-turn-helix domain A3P31_00715 PF06838 Methionine gamma-lyase A3P31_00720 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain A3P31_00720 PF01276 Orn/Lys/Arg decarboxylase, major domain A3P31_00720 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain A3P31_00725 PF13520 Amino acid permease A3P31_00730 PF00639 PPIC-type PPIASE domain A3P31_00735 PF00082 Subtilase family A3P31_00735 PF02225 PA domain A3P31_00735 PF00746 LPXTG cell wall anchor motif A3P31_00735 PF06280 Fn3-like domain A3P31_00745 PF00403 Heavy-metal-associated domain A3P31_00760 PF03965 Penicillinase repressor A3P31_00775 PF01327 Polypeptide deformylase A3P31_00780 PF13936 Helix-turn-helix domain A3P31_00790 PF00860 Permease family A3P31_00800 PF00860 Permease family A3P31_00810 PF00860 Permease family A3P31_00815 PF01070 FMN-dependent dehydrogenase A3P31_00820 PF01712 Deoxynucleoside kinase A3P31_00825 PF01712 Deoxynucleoside kinase A3P31_00830 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase A3P31_00835 PF00248 Aldo/keto reductase family A3P31_00845 PF01380 SIS domain A3P31_00855 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain A3P31_00855 PF13378 Enolase C-terminal domain-like A3P31_00875 PF02378 Phosphotransferase system, EIIC A3P31_00880 PF00144 Beta-lactamase A3P31_00885 PF02608 ABC transporter substrate-binding protein PnrA-like A3P31_00905 PF00005 ABC transporter A3P31_00905 PF00664 ABC transporter transmembrane region A3P31_00910 PF00005 ABC transporter A3P31_00910 PF00664 ABC transporter transmembrane region A3P31_00915 PF02322 Cytochrome bd terminal oxidase subunit II A3P31_00920 PF01654 Cytochrome bd terminal oxidase subunit I A3P31_00925 PF00005 ABC transporter A3P31_00925 PF02687 FtsX-like permease family A3P31_00925 PF12704 MacB-like periplasmic core domain A3P31_00925 PF00005 ABC transporter A3P31_00925 PF02687 FtsX-like permease family A3P31_00925 PF12704 MacB-like periplasmic core domain A3P31_00945 PF03611 PTS system sugar-specific permease component A3P31_00975 PF01470 Pyroglutamyl peptidase A3P31_01010 PF00664 ABC transporter transmembrane region A3P31_01010 PF00005 ABC transporter A3P31_01010 PF03412 Peptidase C39 family A3P31_01015 PF00999 Sodium/hydrogen exchanger family A3P31_01030 PF13936 Helix-turn-helix domain A3P31_01060 PF13193 AMP-binding enzyme C-terminal domain A3P31_01060 PF00501 AMP-binding enzyme A3P31_01065 PF03062 MBOAT, membrane-bound O-acyltransferase family A3P31_01070 PF00550 Phosphopantetheine attachment site A3P31_01075 PF04914 DltD protein A3P31_01085 PF07690 Major Facilitator Superfamily A3P31_01095 PF02378 Phosphotransferase system, EIIC A3P31_01095 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit A3P31_01105 PF07724 AAA domain (Cdc48 subfamily) A3P31_01105 PF10431 C-terminal, D2-small domain, of ClpB protein A3P31_01105 PF17871 AAA lid domain A3P31_01105 PF00004 ATPase family associated with various cellular activities (AAA) A3P31_01110 PF13520 Amino acid permease A3P31_01205 PF03830 PTS system sorbose subfamily IIB component A3P31_01205 PF03610 PTS system fructose IIA component A3P31_01210 PF03609 PTS system sorbose-specific iic component A3P31_01215 PF03613 PTS system mannose/fructose/sorbose family IID component A3P31_01225 PF00324 Amino acid permease A3P31_01230 PF00324 Amino acid permease A3P31_01235 PF07722 Peptidase C26 A3P31_01240 PF13520 Amino acid permease A3P31_01245 PF03590 Aspartate-ammonia ligase A3P31_01250 PF00892 EamA-like transporter family A3P31_01255 PF13520 Amino acid permease A3P31_01260 PF07685 CobB/CobQ-like glutamine amidotransferase domain A3P31_01265 PF08543 Phosphomethylpyrimidine kinase A3P31_01270 PF13350 Tyrosine phosphatase family A3P31_01275 PF00356 Bacterial regulatory proteins, lacI family A3P31_01280 PF08244 Glycosyl hydrolases family 32 C terminal A3P31_01280 PF00251 Glycosyl hydrolases family 32 N-terminal domain A3P31_01285 PF02378 Phosphotransferase system, EIIC A3P31_01285 PF00367 phosphotransferase system, EIIB A3P31_01285 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 A3P31_01295 PF01661 Macro domain A3P31_01300 PF00664 ABC transporter transmembrane region A3P31_01300 PF00005 ABC transporter A3P31_01305 PF07722 Peptidase C26 A3P31_01310 PF07690 Major Facilitator Superfamily A3P31_01320 PF01487 Type I 3-dehydroquinase A3P31_01325 PF00854 POT family A3P31_01340 PF03009 Glycerophosphoryl diester phosphodiesterase family A3P31_01360 PF03883 Peroxide stress protein YaaA A3P31_01370 PF00300 Histidine phosphatase superfamily (branch 1) A3P31_01375 PF00300 Histidine phosphatase superfamily (branch 1) A3P31_01390 PF00005 ABC transporter A3P31_01405 PF03577 Peptidase family C69 A3P31_01420 PF03358 NADPH-dependent FMN reductase A3P31_01425 PF03358 NADPH-dependent FMN reductase A3P31_01435 PF13350 Tyrosine phosphatase family A3P31_01440 PF02424 ApbE family A3P31_01450 PF02527 rRNA small subunit methyltransferase G A3P31_01455 PF02195 ParB-like nuclease domain A3P31_01455 PF17762 HTH domain found in ParB protein A3P31_01460 PF13614 AAA domain A3P31_01465 PF17762 HTH domain found in ParB protein A3P31_01465 PF02195 ParB-like nuclease domain A3P31_01470 PF06107 Bacterial protein of unknown function (DUF951) A3P31_01475 PF06071 Protein of unknown function (DUF933) A3P31_01475 PF01926 50S ribosome-binding GTPase A3P31_01485 PF00005 ABC transporter A3P31_01485 PF00664 ABC transporter transmembrane region A3P31_01490 PF00664 ABC transporter transmembrane region A3P31_01490 PF00005 ABC transporter A3P31_01495 PF00486 Transcriptional regulatory protein, C terminal A3P31_01495 PF00072 Response regulator receiver domain A3P31_01500 PF14827 Double sensory domain of two-component sensor kinase A3P31_01500 PF00672 HAMP domain A3P31_01500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3P31_01500 PF00512 His Kinase A (phospho-acceptor) domain A3P31_01500 PF13426 PAS domain A3P31_01505 PF08245 Mur ligase middle domain A3P31_01505 PF02875 Mur ligase family, glutamate ligase domain A3P31_01510 PF01177 Asp/Glu/Hydantoin racemase A3P31_01515 PF00005 ABC transporter A3P31_01515 PF13732 Domain of unknown function (DUF4162) A3P31_01525 PF16338 Domain of unknown function (DUF4968) A3P31_01525 PF01055 Glycosyl hydrolases family 31 A3P31_01525 PF13802 Galactose mutarotase-like A3P31_01525 PF17137 Domain of unknown function (DUF5110) A3P31_01530 PF08220 DeoR-like helix-turn-helix domain A3P31_01530 PF00455 DeoR C terminal sensor domain A3P31_01535 PF00294 pfkB family carbohydrate kinase A3P31_01540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A3P31_01540 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit A3P31_01555 PF01022 Bacterial regulatory protein, arsR family A3P31_01560 PF01297 Zinc-uptake complex component A periplasmic A3P31_01560 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment A3P31_01565 PF00005 ABC transporter A3P31_01570 PF00950 ABC 3 transport family A3P31_01575 PF02652 L-lactate permease A3P31_01580 PF08439 Oligopeptidase F A3P31_01580 PF01432 Peptidase family M3 A3P31_01585 PF03816 Cell envelope-related transcriptional attenuator domain A3P31_01600 PF12848 ABC transporter A3P31_01600 PF00005 ABC transporter A3P31_01605 PF06738 Putative threonine/serine exporter A3P31_01630 PF00268 Ribonucleotide reductase, small chain A3P31_01635 PF07972 NrdI Flavodoxin like A3P31_01655 PF00625 Guanylate kinase A3P31_01660 PF00877 NlpC/P60 family A3P31_01680 PF13167 GTP-binding GTPase N-terminal A3P31_01680 PF16360 GTP-binding GTPase Middle Region A3P31_01680 PF01926 50S ribosome-binding GTPase A3P31_01685 PF00872 Transposase, Mutator family A3P31_01695 PF13520 Amino acid permease A3P31_01700 PF00005 ABC transporter A3P31_01710 PF00300 Histidine phosphatase superfamily (branch 1) A3P31_01730 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase A3P31_01735 PF01418 Helix-turn-helix domain, rpiR family A3P31_01735 PF01380 SIS domain A3P31_01740 PF00689 Cation transporting ATPase, C-terminus A3P31_01740 PF00690 Cation transporter/ATPase, N-terminus A3P31_01760 PF13538 UvrD-like helicase C-terminal domain A3P31_01765 PF13529 Peptidase_C39 like family A3P31_01770 PF00571 CBS domain A3P31_01770 PF01380 SIS domain A3P31_01780 PF02378 Phosphotransferase system, EIIC A3P31_01790 PF04650 YSIRK type signal peptide A3P31_01790 PF17041 E domain A3P31_01790 PF00746 LPXTG cell wall anchor motif A3P31_01790 PF07501 G5 domain A3P31_01805 PF13007 Transposase C of IS166 homeodomain A3P31_01805 PF13005 zinc-finger binding domain of transposase IS66 A3P31_01805 PF03050 Transposase IS66 family A3P31_01805 PF13817 IS66 C-terminal element A3P31_01825 PF13936 Helix-turn-helix domain A3P31_01835 PF00485 Phosphoribulokinase / Uridine kinase family A3P31_01840 PF09285 Elongation factor P, C-terminal A3P31_01840 PF08207 Elongation factor P (EF-P) KOW-like domain A3P31_01840 PF01132 Elongation factor P (EF-P) OB domain A3P31_01845 PF03123 CAT RNA binding domain A3P31_01845 PF00874 PRD domain A3P31_01850 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 A3P31_01850 PF02378 Phosphotransferase system, EIIC A3P31_01850 PF00367 phosphotransferase system, EIIB A3P31_01855 PF00232 Glycosyl hydrolase family 1 A3P31_01860 PF00892 EamA-like transporter family A3P31_01865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A3P31_01870 PF03830 PTS system sorbose subfamily IIB component A3P31_01870 PF03610 PTS system fructose IIA component A3P31_01880 PF03613 PTS system mannose/fructose/sorbose family IID component A3P31_01895 PF01717 Cobalamin-independent synthase, Catalytic domain A3P31_01900 PF00375 Sodium:dicarboxylate symporter family A3P31_01910 PF01741 Large-conductance mechanosensitive channel, MscL A3P31_01930 PF07687 Peptidase dimerisation domain A3P31_01930 PF01546 Peptidase family M20/M25/M40 A3P31_01950 PF00929 Exonuclease A3P31_01950 PF02811 PHP domain A3P31_01950 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A3P31_01950 PF11490 DNA polymerase III polC-type N-terminus II A3P31_01950 PF07733 Bacterial DNA polymerase III alpha NTPase domain A3P31_01950 PF14480 DNA polymerase III polC-type N-terminus I A3P31_01950 PF14579 Helix-hairpin-helix motif A3P31_01960 PF00248 Aldo/keto reductase family A3P31_01970 PF03577 Peptidase family C69 A3P31_01975 PF00005 ABC transporter A3P31_01975 PF17912 MalK OB fold domain A3P31_01980 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_01985 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_01990 PF00753 Metallo-beta-lactamase superfamily A3P31_01990 PF17770 Ribonuclease J C-terminal domain A3P31_01990 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain A3P31_02005 PF01047 MarR family A3P31_02010 PF13673 Acetyltransferase (GNAT) domain A3P31_02020 PF01869 BadF/BadG/BcrA/BcrD ATPase family A3P31_02030 PF00440 Bacterial regulatory proteins, tetR family A3P31_02030 PF18665 Tetracyclin repressor-like, C-terminal domain A3P31_02035 PF03176 MMPL family A3P31_02055 PF00171 Aldehyde dehydrogenase family A3P31_02075 PF13302 Acetyltransferase (GNAT) domain A3P31_02080 PF02403 Seryl-tRNA synthetase N-terminal domain A3P31_02080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A3P31_02245 PF00534 Glycosyl transferases group 1 A3P31_02245 PF13439 Glycosyltransferase Family 4 A3P31_02250 PF13439 Glycosyltransferase Family 4 A3P31_02250 PF00534 Glycosyl transferases group 1 A3P31_02260 PF00884 Sulfatase A3P31_02380 PF00324 Amino acid permease A3P31_02385 PF00465 Iron-containing alcohol dehydrogenase A3P31_02385 PF00171 Aldehyde dehydrogenase family A3P31_02410 PF00270 DEAD/DEAH box helicase A3P31_02410 PF09369 Domain of unknown function (DUF1998) A3P31_02410 PF00271 Helicase conserved C-terminal domain A3P31_02415 PF01370 NAD dependent epimerase/dehydratase family A3P31_02430 PF00248 Aldo/keto reductase family A3P31_02445 PF06146 Phosphate-starvation-inducible E A3P31_02475 PF02894 Oxidoreductase family, C-terminal alpha/beta domain A3P31_02475 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A3P31_02480 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) A3P31_02490 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain A3P31_02490 PF00056 lactate/malate dehydrogenase, NAD binding domain A3P31_02520 PF01467 Cytidylyltransferase-like A3P31_02525 PF03808 Glycosyl transferase WecB/TagA/CpsF family A3P31_02535 PF00535 Glycosyl transferase family 2 A3P31_02540 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family A3P31_02540 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain A3P31_02540 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain A3P31_02545 PF02540 NAD synthase A3P31_02550 PF00004 ATPase family associated with various cellular activities (AAA) A3P31_02550 PF17866 AAA lid domain A3P31_02555 PF00689 Cation transporting ATPase, C-terminus A3P31_02555 PF00690 Cation transporter/ATPase, N-terminus A3P31_02560 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase A3P31_02575 PF17283 SprT-like zinc ribbon domain A3P31_02575 PF10263 SprT-like family A3P31_02585 PF12822 ECF transporter, substrate-specific component A3P31_02590 PF13457 GW (Gly-Tryp) dipeptide domain A3P31_02590 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase A3P31_02595 PF00580 UvrD/REP helicase N-terminal domain A3P31_02595 PF13361 UvrD-like helicase C-terminal domain A3P31_02600 PF12826 Helix-hairpin-helix motif A3P31_02600 PF03119 NAD-dependent DNA ligase C4 zinc finger domain A3P31_02600 PF03120 NAD-dependent DNA ligase OB-fold domain A3P31_02600 PF01653 NAD-dependent DNA ligase adenylation domain A3P31_02600 PF00533 BRCA1 C Terminus (BRCT) domain A3P31_02610 PF02686 Glu-tRNAGln amidotransferase C subunit A3P31_02615 PF01425 Amidase A3P31_02620 PF02637 GatB domain A3P31_02620 PF02934 GatB/GatE catalytic domain A3P31_02625 PF00781 Diacylglycerol kinase catalytic domain A3P31_02645 PF01027 Inhibitor of apoptosis-promoting Bax1 A3P31_02655 PF12558 ATP-binding cassette cobalt transporter A3P31_02655 PF00005 ABC transporter A3P31_02660 PF07155 ECF-type riboflavin transporter, S component A3P31_02675 PF00005 ABC transporter A3P31_02685 PF05958 tRNA (Uracil-5-)-methyltransferase A3P31_02685 PF01938 TRAM domain A3P31_02720 PF07669 Eco57I restriction-modification methylase A3P31_02750 PF00132 Bacterial transferase hexapeptide (six repeats) A3P31_02805 PF00403 Heavy-metal-associated domain A3P31_02815 PF13545 Crp-like helix-turn-helix domain A3P31_02815 PF00027 Cyclic nucleotide-binding domain A3P31_02820 PF03167 Uracil DNA glycosylase superfamily A3P31_02850 PF01479 S4 domain A3P31_02850 PF00849 RNA pseudouridylate synthase A3P31_02855 PF00905 Penicillin binding protein transpeptidase domain A3P31_02855 PF00912 Transglycosylase A3P31_02860 PF06133 Control of competence regulator ComK, YlbF/YmcA A3P31_02865 PF00149 Calcineurin-like phosphoesterase A3P31_02875 PF01966 HD domain A3P31_02895 PF01230 HIT domain A3P31_02900 PF00005 ABC transporter A3P31_02910 PF02390 Putative methyltransferase A3P31_02920 PF00085 Thioredoxin A3P31_02925 PF14794 Domain of unknown function (DUF4479) A3P31_02925 PF01588 Putative tRNA binding domain A3P31_02930 PF03932 CutC family A3P31_02935 PF08245 Mur ligase middle domain A3P31_02935 PF01225 Mur ligase family, catalytic domain A3P31_02935 PF02875 Mur ligase family, glutamate ligase domain A3P31_02955 PF01367 5'-3' exonuclease, C-terminal SAM fold A3P31_02955 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain A3P31_02955 PF00476 DNA polymerase family A A3P31_02960 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain A3P31_02960 PF06827 Zinc finger found in FPG and IleRS A3P31_02960 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain A3P31_02965 PF01121 Dephospho-CoA kinase A3P31_02970 PF03477 ATP cone domain A3P31_02980 PF07319 Primosomal protein DnaI N-terminus A3P31_02980 PF01695 IstB-like ATP binding protein A3P31_02985 PF03129 Anticodon binding domain A3P31_02985 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A3P31_02985 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A3P31_02985 PF02824 TGS domain A3P31_03000 PF05198 Translation initiation factor IF-3, N-terminal domain A3P31_03000 PF00707 Translation initiation factor IF-3, C-terminal domain A3P31_03005 PF01632 Ribosomal protein L35 A3P31_03010 PF00453 Ribosomal protein L20 A3P31_03025 PF01926 50S ribosome-binding GTPase A3P31_03030 PF01467 Cytidylyltransferase-like A3P31_03035 PF01966 HD domain A3P31_03045 PF05636 HIGH Nucleotidyl Transferase A3P31_03055 PF00072 Response regulator receiver domain A3P31_03055 PF00486 Transcriptional regulatory protein, C terminal A3P31_03060 PF18719 ArlS sensor domain A3P31_03060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3P31_03060 PF00512 His Kinase A (phospho-acceptor) domain A3P31_03065 PF02096 60Kd inner membrane protein A3P31_03070 PF00708 Acylphosphatase A3P31_03075 PF08032 RNA 2'-O ribose methyltransferase substrate binding A3P31_03075 PF00588 SpoU rRNA Methylase family A3P31_03080 PF01638 HxlR-like helix-turn-helix A3P31_03085 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain A3P31_03085 PF01409 tRNA synthetases class II core domain (F) A3P31_03090 PF03483 B3/4 domain A3P31_03090 PF01588 Putative tRNA binding domain A3P31_03090 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain A3P31_03090 PF03147 Ferredoxin-fold anticodon binding domain A3P31_03090 PF03484 tRNA synthetase B5 domain A3P31_03095 PF02618 YceG-like family A3P31_03100 PF03449 Transcription elongation factor, N-terminal A3P31_03100 PF01272 Transcription elongation factor, GreA/GreB, C-term A3P31_03110 PF00905 Penicillin binding protein transpeptidase domain A3P31_03110 PF03717 Penicillin-binding Protein dimerisation domain A3P31_03115 PF00471 Ribosomal protein L33 A3P31_03120 PF01812 5-formyltetrahydrofolate cyclo-ligase family A3P31_03150 PF03951 Glutamine synthetase, beta-Grasp domain A3P31_03150 PF00120 Glutamine synthetase, catalytic domain A3P31_03155 PF07690 Major Facilitator Superfamily A3P31_03180 PF00368 Hydroxymethylglutaryl-coenzyme A reductase A3P31_03185 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal A3P31_03185 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal A3P31_03190 PF05958 tRNA (Uracil-5-)-methyltransferase A3P31_03190 PF01938 TRAM domain A3P31_03195 PF02631 RecX family A3P31_03200 PF04167 Protein of unknown function (DUF402) A3P31_03215 PF00571 CBS domain A3P31_03215 PF03471 Transporter associated domain A3P31_03215 PF01595 Cyclin M transmembrane N-terminal domain A3P31_03220 PF16658 Class II release factor RF3, C-terminal domain A3P31_03220 PF00009 Elongation factor Tu GTP binding domain A3P31_03230 PF10431 C-terminal, D2-small domain, of ClpB protein A3P31_03230 PF17871 AAA lid domain A3P31_03230 PF00004 ATPase family associated with various cellular activities (AAA) A3P31_03230 PF07724 AAA domain (Cdc48 subfamily) A3P31_03240 PF00381 PTS HPr component phosphorylation site A3P31_03245 PF02896 PEP-utilising enzyme, TIM barrel domain A3P31_03245 PF00391 PEP-utilising enzyme, mobile domain A3P31_03245 PF05524 PEP-utilising enzyme, N-terminal A3P31_03250 PF03960 ArsC family A3P31_03255 PF05389 Negative regulator of genetic competence (MecA) A3P31_03270 PF01928 CYTH domain A3P31_03275 PF04607 Region found in RelA / SpoT proteins A3P31_03280 PF01513 ATP-NAD kinase A3P31_03285 PF00849 RNA pseudouridylate synthase A3P31_03290 PF06100 MCRA family A3P31_03300 PF10282 Lactonase, 7-bladed beta-propeller A3P31_03310 PF01594 AI-2E family transporter A3P31_03315 PF00588 SpoU rRNA Methylase family A3P31_03325 PF01580 FtsK/SpoIIIE family A3P31_03325 PF17854 FtsK alpha domain A3P31_03325 PF09397 Ftsk gamma domain A3P31_03335 PF05193 Peptidase M16 inactive domain A3P31_03335 PF00675 Insulinase (Peptidase family M16) A3P31_03345 PF13464 Domain of unknown function (DUF4115) A3P31_03350 PF01066 CDP-alcohol phosphatidyltransferase A3P31_03355 PF00154 recA bacterial DNA recombination protein A3P31_03360 PF01966 HD domain A3P31_03360 PF00013 KH domain A3P31_03360 PF12072 Domain of unknown function (DUF3552) A3P31_03365 PF00953 Glycosyl transferase family 4 A3P31_03370 PF09186 Domain of unknown function (DUF1949) A3P31_03370 PF01205 Uncharacterized protein family UPF0029 A3P31_03375 PF00271 Helicase conserved C-terminal domain A3P31_03375 PF04851 Type III restriction enzyme, res subunit A3P31_03385 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein A3P31_03385 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus A3P31_03390 PF07517 SecA DEAD-like domain A3P31_03390 PF01043 SecA preprotein cross-linking domain A3P31_03390 PF07516 SecA Wing and Scaffold domain A3P31_03395 PF00472 RF-1 domain A3P31_03395 PF03462 PCRF domain A3P31_03405 PF07475 HPr Serine kinase C-terminal domain A3P31_03405 PF02603 HPr Serine kinase N terminus A3P31_03410 PF01790 Prolipoprotein diacylglyceryl transferase A3P31_03415 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus A3P31_03415 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus A3P31_03420 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3P31_03445 PF01370 NAD dependent epimerase/dehydratase family A3P31_03450 PF02929 Beta galactosidase small chain A3P31_03460 PF00356 Bacterial regulatory proteins, lacI family A3P31_03475 PF01527 Transposase A3P31_03480 PF13276 HTH-like domain A3P31_03480 PF13333 Integrase core domain A3P31_03480 PF00665 Integrase core domain A3P31_03485 PF00398 Ribosomal RNA adenine dimethylase A3P31_03495 PF10706 Aminoglycoside-2''-adenylyltransferase A3P31_03505 PF08533 Beta-galactosidase C-terminal domain A3P31_03505 PF08532 Beta-galactosidase trimerisation domain A3P31_03505 PF02449 Beta-galactosidase A3P31_03515 PF10509 Galactokinase galactose-binding signature A3P31_03515 PF00288 GHMP kinases N terminal domain A3P31_03515 PF08544 GHMP kinases C terminal A3P31_03520 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain A3P31_03520 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain A3P31_03525 PF01263 Aldose 1-epimerase A3P31_03530 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A3P31_03530 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A3P31_03530 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A3P31_03530 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A3P31_03535 PF17757 UvrB interaction domain A3P31_03535 PF02151 UvrB/uvrC motif A3P31_03535 PF04851 Type III restriction enzyme, res subunit A3P31_03535 PF12344 Ultra-violet resistance protein B A3P31_03535 PF00271 Helicase conserved C-terminal domain A3P31_03540 PF17755 UvrA DNA-binding domain A3P31_03540 PF00005 ABC transporter A3P31_03540 PF17760 UvrA interaction domain A3P31_03550 PF03668 P-loop ATPase protein family A3P31_03555 PF01933 Uncharacterised protein family UPF0052 A3P31_03560 PF02650 WhiA C-terminal HTH domain A3P31_03560 PF14527 WhiA LAGLIDADG-like domain A3P31_03560 PF10298 WhiA N-terminal LAGLIDADG-like domain A3P31_03565 PF00574 Clp protease A3P31_03570 PF07690 Major Facilitator Superfamily A3P31_03575 PF01446 Replication protein A3P31_03585 PF01719 Plasmid replication protein A3P31_03610 PF04198 Putative sugar-binding domain A3P31_03615 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain A3P31_03615 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A3P31_03620 PF00162 Phosphoglycerate kinase A3P31_03625 PF00121 Triosephosphate isomerase A3P31_03630 PF03952 Enolase, N-terminal domain A3P31_03630 PF00113 Enolase, C-terminal TIM barrel domain A3P31_03640 PF00773 RNB domain A3P31_03640 PF08206 Ribonuclease B OB domain A3P31_03640 PF17876 Cold shock domain A3P31_03640 PF00575 S1 RNA binding domain A3P31_03645 PF01668 SmpB protein A3P31_03670 PF03167 Uracil DNA glycosylase superfamily A3P31_03675 PF01515 Phosphate acetyl/butaryl transferase A3P31_03680 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE A3P31_03690 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain A3P31_03690 PF01565 FAD binding domain A3P31_03695 PF00005 ABC transporter A3P31_03695 PF08402 TOBE domain A3P31_03700 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_03705 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_03715 PF02457 DisA bacterial checkpoint controller nucleotide-binding A3P31_03725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A3P31_03725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A3P31_03725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A3P31_03725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A3P31_03735 PF02537 CrcB-like protein, Camphor Resistance (CrcB) A3P31_03740 PF02537 CrcB-like protein, Camphor Resistance (CrcB) A3P31_03755 PF12146 Serine aminopeptidase, S33 A3P31_03760 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment A3P31_03760 PF01297 Zinc-uptake complex component A periplasmic A3P31_03765 PF02441 Flavoprotein A3P31_03765 PF04127 DNA / pantothenate metabolism flavoprotein A3P31_03775 PF01709 Transcriptional regulator A3P31_03780 PF00437 Type II/IV secretion system protein A3P31_03790 PF07963 Prokaryotic N-terminal methylation motif A3P31_03810 PF02384 N-6 DNA Methylase A3P31_03815 PF00871 Acetokinase family A3P31_03825 PF00746 LPXTG cell wall anchor motif A3P31_03825 PF02435 Levansucrase/Invertase A3P31_03845 PF01238 Phosphomannose isomerase type I A3P31_03855 PF00072 Response regulator receiver domain A3P31_03855 PF00486 Transcriptional regulatory protein, C terminal A3P31_03860 PF00512 His Kinase A (phospho-acceptor) domain A3P31_03860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3P31_03860 PF00672 HAMP domain A3P31_03865 PF00884 Sulfatase A3P31_03875 PF00342 Phosphoglucose isomerase A3P31_03900 PF00144 Beta-lactamase A3P31_03905 PF08353 Domain of unknown function (DUF1727) A3P31_03905 PF08245 Mur ligase middle domain A3P31_03910 PF00265 Thymidine kinase A3P31_03915 PF03462 PCRF domain A3P31_03915 PF00472 RF-1 domain A3P31_03920 PF05175 Methyltransferase small domain A3P31_03925 PF03481 Putative GTP-binding controlling metal-binding A3P31_03925 PF01300 Telomere recombination A3P31_03935 PF00119 ATP synthase A chain A3P31_03940 PF00137 ATP synthase subunit C A3P31_03945 PF00430 ATP synthase B/B' CF(0) A3P31_03950 PF00213 ATP synthase delta (OSCP) subunit A3P31_03955 PF02874 ATP synthase alpha/beta family, beta-barrel domain A3P31_03955 PF00306 ATP synthase alpha/beta chain, C terminal domain A3P31_03955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A3P31_03960 PF00231 ATP synthase A3P31_03965 PF02874 ATP synthase alpha/beta family, beta-barrel domain A3P31_03965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A3P31_03970 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain A3P31_03970 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain A3P31_03990 PF01809 Putative membrane protein insertion efficiency factor A3P31_04000 PF01098 Cell cycle protein A3P31_04005 PF00582 Universal stress protein family A3P31_04015 PF12002 MgsA AAA+ ATPase C terminal A3P31_04015 PF05496 Holliday junction DNA helicase RuvB P-loop domain A3P31_04015 PF16193 AAA C-terminal domain A3P31_04025 PF00163 Ribosomal protein S4/S9 N-terminal domain A3P31_04025 PF01479 S4 domain A3P31_04030 PF06160 Septation ring formation regulator, EzrA A3P31_04035 PF00266 Aminotransferase class-V A3P31_04040 PF02926 THUMP domain A3P31_04040 PF02568 Thiamine biosynthesis protein (ThiI) A3P31_04045 PF01479 S4 domain A3P31_04045 PF00849 RNA pseudouridylate synthase A3P31_04055 PF00689 Cation transporting ATPase, C-terminus A3P31_04055 PF00690 Cation transporter/ATPase, N-terminus A3P31_04060 PF00133 tRNA synthetases class I (I, L, M and V) A3P31_04060 PF08264 Anticodon-binding domain of tRNA A3P31_04060 PF10458 Valyl tRNA synthetase tRNA binding arm A3P31_04065 PF08245 Mur ligase middle domain A3P31_04065 PF02875 Mur ligase family, glutamate ligase domain A3P31_04070 PF13419 Haloacid dehalogenase-like hydrolase A3P31_04075 PF04002 RadC-like JAB domain A3P31_04105 PF02381 MraZ protein, putative antitoxin-like A3P31_04110 PF01795 MraW methylase family A3P31_04125 PF00953 Glycosyl transferase family 4 A3P31_04125 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 A3P31_04130 PF08245 Mur ligase middle domain A3P31_04135 PF04101 Glycosyltransferase family 28 C-terminal domain A3P31_04135 PF03033 Glycosyltransferase family 28 N-terminal domain A3P31_04140 PF08478 POTRA domain, FtsQ-type A3P31_04140 PF03799 Cell division protein FtsQ A3P31_04145 PF02491 SHS2 domain inserted in FTSA A3P31_04145 PF11983 Membrane-attachment and polymerisation-promoting switch A3P31_04150 PF00091 Tubulin/FtsZ family, GTPase domain A3P31_04150 PF12327 FtsZ family, C-terminal domain A3P31_04155 PF04472 Cell division protein SepF A3P31_04170 PF05103 DivIVA protein A3P31_04175 PF08264 Anticodon-binding domain of tRNA A3P31_04175 PF06827 Zinc finger found in FPG and IleRS A3P31_04175 PF00133 tRNA synthetases class I (I, L, M and V) A3P31_04180 PF00313 'Cold-shock' DNA-binding domain A3P31_04185 PF00293 NUDIX domain A3P31_04195 PF01048 Phosphorylase superfamily A3P31_04200 PF00266 Aminotransferase class-V A3P31_04225 PF14490 Helix-hairpin-helix containing domain A3P31_04225 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain A3P31_04225 PF13538 UvrD-like helicase C-terminal domain A3P31_04235 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain A3P31_04235 PF17770 Ribonuclease J C-terminal domain A3P31_04235 PF00753 Metallo-beta-lactamase superfamily A3P31_04245 PF01327 Polypeptide deformylase A3P31_04260 PF01098 Cell cycle protein A3P31_04265 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) A3P31_04275 PF01467 Cytidylyltransferase-like A3P31_04280 PF05362 Lon protease (S16) C-terminal proteolytic domain A3P31_04280 PF13180 PDZ domain A3P31_04285 PF10531 SLBB domain A3P31_04290 PF00753 Metallo-beta-lactamase superfamily A3P31_04290 PF03772 Competence protein A3P31_04295 PF06144 DNA polymerase III, delta subunit A3P31_04300 PF01649 Ribosomal protein S20 A3P31_04305 PF00312 Ribosomal protein S15 A3P31_04310 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain A3P31_04310 PF17770 Ribonuclease J C-terminal domain A3P31_04310 PF00753 Metallo-beta-lactamase superfamily A3P31_04320 PF03143 Elongation factor Tu C-terminal domain A3P31_04320 PF03144 Elongation factor Tu domain 2 A3P31_04320 PF00009 Elongation factor Tu GTP binding domain A3P31_04325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A3P31_04325 PF05698 Bacterial trigger factor protein (TF) C-terminus A3P31_04325 PF05697 Bacterial trigger factor protein (TF) A3P31_04330 PF06689 ClpX C4-type zinc finger A3P31_04330 PF10431 C-terminal, D2-small domain, of ClpB protein A3P31_04330 PF07724 AAA domain (Cdc48 subfamily) A3P31_04335 PF01926 50S ribosome-binding GTPase A3P31_04340 PF01451 Low molecular weight phosphotyrosine protein phosphatase A3P31_04355 PF01323 DSBA-like thioredoxin domain A3P31_04380 PF03816 Cell envelope-related transcriptional attenuator domain A3P31_04385 PF02706 Chain length determinant protein A3P31_04385 PF13807 G-rich domain on putative tyrosine kinase A3P31_04390 PF13614 AAA domain A3P31_04400 PF02397 Bacterial sugar transferase A3P31_04405 PF13439 Glycosyltransferase Family 4 A3P31_04405 PF00534 Glycosyl transferases group 1 A3P31_04410 PF00534 Glycosyl transferases group 1 A3P31_04415 PF01501 Glycosyl transferase family 8 A3P31_04415 PF00535 Glycosyl transferase family 2 A3P31_04440 PF03275 UDP-galactopyranose mutase A3P31_04470 PF03050 Transposase IS66 family A3P31_04470 PF13817 IS66 C-terminal element A3P31_04470 PF13007 Transposase C of IS166 homeodomain A3P31_04470 PF13005 zinc-finger binding domain of transposase IS66 A3P31_04490 PF00872 Transposase, Mutator family A3P31_04500 PF00872 Transposase, Mutator family A3P31_04530 PF00872 Transposase, Mutator family A3P31_04535 PF00483 Nucleotidyl transferase A3P31_04540 PF12804 MobA-like NTP transferase domain A3P31_04545 PF02028 BCCT, betaine/carnitine/choline family transporter A3P31_04575 PF13395 HNH endonuclease A3P31_04575 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 A3P31_04575 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 A3P31_04575 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 A3P31_04580 PF01867 CRISPR associated protein Cas1 A3P31_04585 PF09827 CRISPR associated protein Cas2 A3P31_04595 PF13936 Helix-turn-helix domain A3P31_04610 PF13333 Integrase core domain A3P31_04610 PF00665 Integrase core domain A3P31_04610 PF13276 HTH-like domain A3P31_04630 PF01435 Peptidase family M48 A3P31_04635 PF00270 DEAD/DEAH box helicase A3P31_04635 PF18019 HD domain A3P31_04635 PF18395 Cas3 C-terminal domain A3P31_04650 PF09344 CT1975-like protein A3P31_04660 PF08798 CRISPR associated protein A3P31_04665 PF01867 CRISPR associated protein Cas1 A3P31_04670 PF14579 Helix-hairpin-helix motif A3P31_04670 PF02811 PHP domain A3P31_04670 PF07733 Bacterial DNA polymerase III alpha NTPase domain A3P31_04670 PF11490 DNA polymerase III polC-type N-terminus II A3P31_04670 PF14480 DNA polymerase III polC-type N-terminus I A3P31_04670 PF00929 Exonuclease A3P31_04670 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A3P31_04685 PF00293 NUDIX domain A3P31_04685 PF13344 Haloacid dehalogenase-like hydrolase A3P31_04725 PF09335 SNARE associated Golgi protein A3P31_04730 PF01156 Inosine-uridine preferring nucleoside hydrolase A3P31_04735 PF01541 GIY-YIG catalytic domain A3P31_04735 PF02151 UvrB/uvrC motif A3P31_04735 PF08459 UvrC Helix-hairpin-helix N-terminal A3P31_04740 PF01926 50S ribosome-binding GTPase A3P31_04740 PF01018 GTP1/OBG A3P31_04740 PF09269 Domain of unknown function (DUF1967) A3P31_04745 PF01757 Acyltransferase family A3P31_04750 PF00753 Metallo-beta-lactamase superfamily A3P31_04755 PF00106 short chain dehydrogenase A3P31_04765 PF01783 Ribosomal L32p protein family A3P31_04770 PF00149 Calcineurin-like phosphoesterase A3P31_04770 PF02872 5'-nucleotidase, C-terminal domain A3P31_04780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A3P31_04780 PF01336 OB-fold nucleic acid binding domain A3P31_04780 PF07733 Bacterial DNA polymerase III alpha NTPase domain A3P31_04780 PF14579 Helix-hairpin-helix motif A3P31_04780 PF02811 PHP domain A3P31_04790 PF00365 Phosphofructokinase A3P31_04795 PF00391 PEP-utilising enzyme, mobile domain A3P31_04795 PF00224 Pyruvate kinase, barrel domain A3P31_04795 PF02887 Pyruvate kinase, alpha/beta domain A3P31_04800 PF13509 S1 domain A3P31_04800 PF17783 CvfB-like winged helix domain A3P31_04805 PF00589 Phage integrase family A3P31_04805 PF02899 Phage integrase, N-terminal SAM-like domain A3P31_04810 PF00583 Acetyltransferase (GNAT) family A3P31_04815 PF02616 Segregation and condensation protein ScpA A3P31_04820 PF04079 Segregation and condensation complex subunit ScpB A3P31_04825 PF01479 S4 domain A3P31_04825 PF00849 RNA pseudouridylate synthase A3P31_04835 PF12822 ECF transporter, substrate-specific component A3P31_04840 PF02224 Cytidylate kinase A3P31_04845 PF00575 S1 RNA binding domain A3P31_04850 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal A3P31_04850 PF01926 50S ribosome-binding GTPase A3P31_04855 PF00216 Bacterial DNA-binding protein A3P31_04865 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) A3P31_04865 PF00271 Helicase conserved C-terminal domain A3P31_04865 PF08463 EcoEI R protein C-terminal A3P31_04865 PF04851 Type III restriction enzyme, res subunit A3P31_04875 PF02384 N-6 DNA Methylase A3P31_04880 PF01420 Type I restriction modification DNA specificity domain A3P31_04895 PF00293 NUDIX domain A3P31_04900 PF00271 Helicase conserved C-terminal domain A3P31_04900 PF00270 DEAD/DEAH box helicase A3P31_04910 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) A3P31_04910 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 A3P31_04915 PF13735 tRNA nucleotidyltransferase domain 2 putative A3P31_04915 PF12627 Probable RNA and SrmB- binding site of polymerase A A3P31_04915 PF01743 Poly A polymerase head domain A3P31_04920 PF03006 Haemolysin-III related A3P31_04925 PF02645 Uncharacterised protein, DegV family COG1307 A3P31_04930 PF06855 YozE SAM-like fold A3P31_04935 PF01471 Putative peptidoglycan binding domain A3P31_04935 PF03572 Peptidase family S41 A3P31_04935 PF17820 PDZ domain A3P31_04940 PF01926 50S ribosome-binding GTPase A3P31_04945 PF01351 Ribonuclease HII A3P31_04950 PF02481 DNA recombination-mediator protein A A3P31_04955 PF01131 DNA topoisomerase A3P31_04955 PF01751 Toprim domain A3P31_04955 PF01396 Topoisomerase DNA binding C4 zinc finger A3P31_04960 PF01134 Glucose inhibited division protein A A3P31_04965 PF00589 Phage integrase family A3P31_04965 PF02899 Phage integrase, N-terminal SAM-like domain A3P31_04970 PF00227 Proteasome subunit A3P31_04975 PF00004 ATPase family associated with various cellular activities (AAA) A3P31_04975 PF07724 AAA domain (Cdc48 subfamily) A3P31_04975 PF10431 C-terminal, D2-small domain, of ClpB protein A3P31_05005 PF03601 Conserved hypothetical protein 698 A3P31_05020 PF13333 Integrase core domain A3P31_05020 PF00665 Integrase core domain A3P31_05020 PF13276 HTH-like domain A3P31_05030 PF00205 Thiamine pyrophosphate enzyme, central domain A3P31_05030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A3P31_05030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A3P31_05035 PF03306 Alpha-acetolactate decarboxylase A3P31_05045 PF00248 Aldo/keto reductase family A3P31_05050 PF13419 Haloacid dehalogenase-like hydrolase A3P31_05055 PF00293 NUDIX domain A3P31_05085 PF05525 Branched-chain amino acid transport protein A3P31_05090 PF00005 ABC transporter A3P31_05095 PF01458 Uncharacterized protein family (UPF0051) A3P31_05100 PF00266 Aminotransferase class-V A3P31_05105 PF01592 NifU-like N terminal domain A3P31_05110 PF01458 Uncharacterized protein family (UPF0051) A3P31_05115 PF01883 Iron-sulfur cluster assembly protein A3P31_05125 PF01209 ubiE/COQ5 methyltransferase family A3P31_05130 PF13276 HTH-like domain A3P31_05130 PF13333 Integrase core domain A3P31_05130 PF00665 Integrase core domain A3P31_05175 PF08534 Redoxin A3P31_05200 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) A3P31_05205 PF16193 AAA C-terminal domain A3P31_05205 PF05496 Holliday junction DNA helicase RuvB P-loop domain A3P31_05205 PF12002 MgsA AAA+ ATPase C terminal A3P31_05225 PF12464 Maltose acetyltransferase A3P31_05225 PF00132 Bacterial transferase hexapeptide (six repeats) A3P31_05230 PF02660 Glycerol-3-phosphate acyltransferase A3P31_05235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3P31_05235 PF01751 Toprim domain A3P31_05235 PF00204 DNA gyrase B A3P31_05235 PF00986 DNA gyrase B subunit, carboxyl terminus A3P31_05240 PF00521 DNA gyrase/topoisomerase IV, subunit A A3P31_05240 PF03989 DNA gyrase C-terminal domain, beta-propeller A3P31_05250 PF01368 DHH family A3P31_05250 PF02833 DHHA2 domain A3P31_05255 PF16124 RecQ zinc-binding A3P31_05255 PF09382 RQC domain A3P31_05255 PF00570 HRDC domain A3P31_05255 PF00270 DEAD/DEAH box helicase A3P31_05255 PF00271 Helicase conserved C-terminal domain A3P31_05260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD A3P31_05270 PF00589 Phage integrase family A3P31_05270 PF13495 Phage integrase, N-terminal SAM-like domain A3P31_05275 PF03466 LysR substrate binding domain A3P31_05275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3P31_05285 PF02645 Uncharacterised protein, DegV family COG1307 A3P31_05300 PF02142 MGS-like domain A3P31_05300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A3P31_05300 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain A3P31_05305 PF00117 Glutamine amidotransferase class-I A3P31_05305 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain A3P31_05310 PF00849 RNA pseudouridylate synthase A3P31_05310 PF01479 S4 domain A3P31_05315 PF01252 Signal peptidase (SPase) II A3P31_05320 PF01268 Formate--tetrahydrofolate ligase A3P31_05330 PF02645 Uncharacterised protein, DegV family COG1307 A3P31_05345 PF01170 Putative RNA methylase family UPF0020 A3P31_05345 PF02926 THUMP domain A3P31_05355 PF05103 DivIVA protein A3P31_05360 PF06908 YspA SLOG family A3P31_05365 PF03838 Recombination protein U A3P31_05370 PF00912 Transglycosylase A3P31_05370 PF00905 Penicillin binding protein transpeptidase domain A3P31_05375 PF10576 Iron-sulfur binding domain of endonuclease III A3P31_05375 PF00633 Helix-hairpin-helix motif A3P31_05375 PF00730 HhH-GPD superfamily base excision DNA repair protein A3P31_05380 PF07261 Replication initiation and membrane attachment A3P31_05385 PF01336 OB-fold nucleic acid binding domain A3P31_05385 PF00152 tRNA synthetases class II (D, K and N) A3P31_05395 PF13307 Helicase C-terminal domain A3P31_05395 PF00929 Exonuclease A3P31_05395 PF04851 Type III restriction enzyme, res subunit A3P31_05400 PF00580 UvrD/REP helicase N-terminal domain A3P31_05400 PF12705 PD-(D/E)XK nuclease superfamily A3P31_05400 PF13361 UvrD-like helicase C-terminal domain A3P31_05405 PF12705 PD-(D/E)XK nuclease superfamily A3P31_05410 PF10509 Galactokinase galactose-binding signature A3P31_05410 PF08544 GHMP kinases C terminal A3P31_05410 PF00288 GHMP kinases N terminal domain A3P31_05420 PF00288 GHMP kinases N terminal domain A3P31_05420 PF08544 GHMP kinases C terminal A3P31_05425 PF01070 FMN-dependent dehydrogenase A3P31_05430 PF00005 ABC transporter A3P31_05430 PF00664 ABC transporter transmembrane region A3P31_05435 PF00664 ABC transporter transmembrane region A3P31_05435 PF00005 ABC transporter A3P31_05435 PF03412 Peptidase C39 family A3P31_05445 PF13333 Integrase core domain A3P31_05445 PF00665 Integrase core domain A3P31_05445 PF13276 HTH-like domain A3P31_05450 PF01527 Transposase A3P31_05455 PF00872 Transposase, Mutator family A3P31_05470 PF06800 Sugar transport protein A3P31_05475 PF05025 RbsD / FucU transport protein family A3P31_05480 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain A3P31_05480 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain A3P31_05485 PF00300 Histidine phosphatase superfamily (branch 1) A3P31_05500 PF04073 Aminoacyl-tRNA editing domain A3P31_05525 PF00485 Phosphoribulokinase / Uridine kinase family A3P31_05565 PF13350 Tyrosine phosphatase family A3P31_05610 PF00664 ABC transporter transmembrane region A3P31_05610 PF00005 ABC transporter A3P31_05625 PF00005 ABC transporter A3P31_05625 PF00664 ABC transporter transmembrane region A3P31_05630 PF03412 Peptidase C39 family A3P31_05630 PF00664 ABC transporter transmembrane region A3P31_05630 PF00005 ABC transporter A3P31_05635 PF13936 Helix-turn-helix domain A3P31_05650 PF02595 Glycerate kinase family A3P31_05665 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A3P31_05675 PF05649 Peptidase family M13 A3P31_05675 PF01431 Peptidase family M13 A3P31_05690 PF00311 Phosphoenolpyruvate carboxylase A3P31_05695 PF00857 Isochorismatase family A3P31_05700 PF00156 Phosphoribosyl transferase domain A3P31_05705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A3P31_05705 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain A3P31_05705 PF02142 MGS-like domain A3P31_05710 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain A3P31_05710 PF00117 Glutamine amidotransferase class-I A3P31_05715 PF01979 Amidohydrolase family A3P31_05720 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain A3P31_05720 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain A3P31_05725 PF00156 Phosphoribosyl transferase domain A3P31_05730 PF01180 Dihydroorotate dehydrogenase A3P31_05735 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family A3P31_05740 PF00156 Phosphoribosyl transferase domain A3P31_05755 PF02698 DUF218 domain A3P31_05760 PF01906 Putative heavy-metal-binding A3P31_05765 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF A3P31_05765 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF A3P31_05765 PF01189 16S rRNA methyltransferase RsmB/F A3P31_05780 PF10502 Signal peptidase, peptidase S26 A3P31_05800 PF00005 ABC transporter A3P31_05805 PF00392 Bacterial regulatory proteins, gntR family A3P31_05810 PF01546 Peptidase family M20/M25/M40 A3P31_05810 PF07687 Peptidase dimerisation domain A3P31_05815 PF01784 NIF3 (NGG1p interacting factor 3) A3P31_05820 PF04816 tRNA (adenine(22)-N(1))-methyltransferase A3P31_05825 PF00497 Bacterial extracellular solute-binding proteins, family 3 A3P31_05830 PF00005 ABC transporter A3P31_05835 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_05840 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_05845 PF04542 Sigma-70 region 2 A3P31_05845 PF00140 Sigma-70 factor, region 1.2 A3P31_05845 PF03979 Sigma-70 factor, region 1.1 A3P31_05845 PF04539 Sigma-70 region 3 A3P31_05845 PF04545 Sigma-70, region 4 A3P31_05850 PF01807 CHC2 zinc finger A3P31_05850 PF08275 DNA primase catalytic core, N-terminal domain A3P31_05850 PF10410 DnaB-helicase binding domain of primase A3P31_05855 PF02092 Glycyl-tRNA synthetase beta subunit A3P31_05855 PF05746 DALR anticodon binding domain A3P31_05860 PF02091 Glycyl-tRNA synthetase alpha subunit A3P31_05865 PF11967 Recombination protein O N terminal A3P31_05865 PF02565 Recombination protein O C terminal A3P31_05870 PF01926 50S ribosome-binding GTPase A3P31_05870 PF07650 KH domain A3P31_05875 PF02130 Uncharacterized protein family UPF0054 A3P31_05880 PF02562 PhoH-like protein A3P31_05885 PF09424 Yqey-like protein A3P31_05890 PF01165 Ribosomal protein S21 A3P31_05895 PF03618 Kinase/pyrophosphorylase A3P31_05900 PF01883 Iron-sulfur cluster assembly protein A3P31_05905 PF03313 Serine dehydratase alpha chain A3P31_05910 PF03315 Serine dehydratase beta chain A3P31_05910 PF01842 ACT domain A3P31_05915 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 A3P31_05915 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) A3P31_05920 PF01625 Peptide methionine sulfoxide reductase A3P31_05940 PF01641 SelR domain A3P31_05945 PF00155 Aminotransferase class I and II A3P31_05950 PF01336 OB-fold nucleic acid binding domain A3P31_05950 PF02938 GAD domain A3P31_05950 PF00152 tRNA synthetases class II (D, K and N) A3P31_05955 PF03129 Anticodon binding domain A3P31_05955 PF13393 Histidyl-tRNA synthetase A3P31_05960 PF02580 D-Tyr-tRNA(Tyr) deacylase A3P31_05965 PF02824 TGS domain A3P31_05965 PF04607 Region found in RelA / SpoT proteins A3P31_05965 PF13291 ACT domain A3P31_05980 PF04073 Aminoacyl-tRNA editing domain A3P31_05995 PF17763 Glutaminase/Asparaginase C-terminal domain A3P31_05995 PF00710 Asparaginase, N-terminal A3P31_06005 PF00056 lactate/malate dehydrogenase, NAD binding domain A3P31_06005 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain A3P31_06010 PF14537 Cytochrome c3 A3P31_06010 PF00890 FAD binding domain A3P31_06015 PF00206 Lyase A3P31_06015 PF10415 Fumarase C C-terminus A3P31_06020 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_06025 PF00005 ABC transporter A3P31_06025 PF09383 NIL domain A3P31_06030 PF03180 NLPA lipoprotein A3P31_06040 PF13936 Helix-turn-helix domain A3P31_06065 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family A3P31_06070 PF00005 ABC transporter A3P31_06070 PF12848 ABC transporter A3P31_06080 PF03952 Enolase, N-terminal domain A3P31_06080 PF00113 Enolase, C-terminal TIM barrel domain A3P31_06095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3P31_06095 PF03466 LysR substrate binding domain A3P31_06110 PF00186 Dihydrofolate reductase A3P31_06115 PF00303 Thymidylate synthase A3P31_06120 PF13396 Phospholipase_D-nuclease N-terminal A3P31_06120 PF13091 PLD-like domain A3P31_06125 PF13520 Amino acid permease A3P31_06130 PF13333 Integrase core domain A3P31_06130 PF00665 Integrase core domain A3P31_06130 PF13276 HTH-like domain A3P31_06135 PF01527 Transposase A3P31_06140 PF00156 Phosphoribosyl transferase domain A3P31_06145 PF10141 Single-strand DNA-specific exonuclease, C terminal domain A3P31_06145 PF02272 DHHA1 domain A3P31_06145 PF17768 RecJ OB domain A3P31_06145 PF01368 DHH family A3P31_06150 PF04203 Sortase domain A3P31_06155 PF03144 Elongation factor Tu domain 2 A3P31_06155 PF00009 Elongation factor Tu GTP binding domain A3P31_06155 PF06421 GTP-binding protein LepA C-terminus A3P31_06155 PF00679 Elongation factor G C-terminus A3P31_06160 PF00684 DnaJ central domain A3P31_06160 PF01556 DnaJ C terminal domain A3P31_06160 PF00226 DnaJ domain A3P31_06165 PF00012 Hsp70 protein A3P31_06170 PF01025 GrpE A3P31_06175 PF01628 HrcA protein C terminal domain A3P31_06185 PF16326 ABC transporter C-terminal domain A3P31_06185 PF12848 ABC transporter A3P31_06185 PF00005 ABC transporter A3P31_06190 PF01687 Riboflavin kinase A3P31_06190 PF06574 FAD synthetase A3P31_06195 PF01509 TruB family pseudouridylate synthase (N terminal domain) A3P31_06195 PF16198 tRNA pseudouridylate synthase B C-terminal domain A3P31_06200 PF02033 Ribosome-binding factor A A3P31_06205 PF00009 Elongation factor Tu GTP binding domain A3P31_06205 PF11987 Translation-initiation factor 2 A3P31_06205 PF04760 Translation initiation factor IF-2, N-terminal region A3P31_06210 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family A3P31_06215 PF04296 Protein of unknown function (DUF448) A3P31_06220 PF08529 NusA N-terminal domain A3P31_06220 PF13184 NusA-like KH domain A3P31_06220 PF00575 S1 RNA binding domain A3P31_06225 PF17384 RimP C-terminal SH3 domain A3P31_06225 PF02576 RimP N-terminal domain A3P31_06230 PF07733 Bacterial DNA polymerase III alpha NTPase domain A3P31_06230 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A3P31_06230 PF00929 Exonuclease A3P31_06230 PF02811 PHP domain A3P31_06230 PF11490 DNA polymerase III polC-type N-terminus II A3P31_06230 PF14480 DNA polymerase III polC-type N-terminus I A3P31_06230 PF01336 OB-fold nucleic acid binding domain A3P31_06230 PF14579 Helix-hairpin-helix motif A3P31_06235 PF03129 Anticodon binding domain A3P31_06235 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A3P31_06235 PF04073 Aminoacyl-tRNA editing domain A3P31_06240 PF02163 Peptidase family M50 A3P31_06240 PF17820 PDZ domain A3P31_06250 PF01255 Putative undecaprenyl diphosphate synthase A3P31_06255 PF01765 Ribosome recycling factor A3P31_06260 PF00696 Amino acid kinase family A3P31_06265 PF00889 Elongation factor TS A3P31_06270 PF00318 Ribosomal protein S2 A3P31_06275 PF05175 Methyltransferase small domain A3P31_06280 PF01553 Acyltransferase A3P31_06290 PF00664 ABC transporter transmembrane region A3P31_06290 PF00005 ABC transporter A3P31_06295 PF00664 ABC transporter transmembrane region A3P31_06295 PF00005 ABC transporter A3P31_06300 PF03672 Uncharacterised protein family (UPF0154) A3P31_06305 PF05979 Bacterial protein of unknown function (DUF896) A3P31_06310 PF00717 Peptidase S24-like A3P31_06310 PF01726 LexA DNA binding domain A3P31_06320 PF00293 NUDIX domain A3P31_06325 PF10502 Signal peptidase, peptidase S26 A3P31_06330 PF01245 Ribosomal protein L19 A3P31_06335 PF01746 tRNA (Guanine-1)-methyltransferase A3P31_06340 PF01782 RimM N-terminal domain A3P31_06340 PF05239 PRC-barrel domain A3P31_06345 PF00886 Ribosomal protein S16 A3P31_06350 PF00448 SRP54-type protein, GTPase domain A3P31_06350 PF02881 SRP54-type protein, helical bundle domain A3P31_06350 PF02978 Signal peptide binding domain A3P31_06355 PF04297 Putative helix-turn-helix protein, YlxM / p13 like A3P31_06360 PF03577 Peptidase family C69 A3P31_06365 PF02881 SRP54-type protein, helical bundle domain A3P31_06365 PF00448 SRP54-type protein, GTPase domain A3P31_06370 PF02463 RecF/RecN/SMC N terminal domain A3P31_06370 PF06470 SMC proteins Flexible Hinge Domain A3P31_06375 PF14622 Ribonuclease-III-like A3P31_06375 PF00035 Double-stranded RNA binding motif A3P31_06385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A3P31_06390 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_06395 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_06400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3P31_06400 PF00005 ABC transporter A3P31_06405 PF00005 ABC transporter A3P31_06405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3P31_06410 PF00550 Phosphopantetheine attachment site A3P31_06415 PF02504 Fatty acid synthesis protein A3P31_06420 PF00270 DEAD/DEAH box helicase A3P31_06420 PF00271 Helicase conserved C-terminal domain A3P31_06420 PF17191 RecG wedge domain A3P31_06425 PF02734 DAK2 domain A3P31_06425 PF13684 Dihydroxyacetone kinase family A3P31_06430 PF03780 Asp23 family, cell envelope-related function A3P31_06435 PF00830 Ribosomal L28 family A3P31_06440 PF04263 Thiamin pyrophosphokinase, catalytic domain A3P31_06440 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain A3P31_06445 PF00834 Ribulose-phosphate 3 epimerase family A3P31_06450 PF03193 RsgA GTPase A3P31_06450 PF16745 RsgA N-terminal domain A3P31_06455 PF03793 PASTA domain A3P31_06455 PF00069 Protein kinase domain A3P31_06465 PF01029 NusB family A3P31_06465 PF01189 16S rRNA methyltransferase RsmB/F A3P31_06470 PF02911 Formyl transferase, C-terminal domain A3P31_06470 PF00551 Formyl transferase A3P31_06475 PF17764 3′ DNA-binding domain (3′BD) A3P31_06475 PF00271 Helicase conserved C-terminal domain A3P31_06475 PF18074 Primosomal protein N C-terminal domain A3P31_06475 PF18319 PriA DNA helicase Cys-rich region (CRR) domain A3P31_06475 PF04851 Type III restriction enzyme, res subunit A3P31_06480 PF01192 RNA polymerase Rpb6 A3P31_06485 PF00625 Guanylate kinase A3P31_06495 PF01527 Transposase A3P31_06500 PF13276 HTH-like domain A3P31_06500 PF00665 Integrase core domain A3P31_06500 PF13333 Integrase core domain A3P31_06505 PF13476 AAA domain A3P31_06510 PF01728 FtsJ-like methyltransferase A3P31_06510 PF01479 S4 domain A3P31_06515 PF00348 Polyprenyl synthetase A3P31_06520 PF02609 Exonuclease VII small subunit A3P31_06525 PF13742 OB-fold nucleic acid binding domain A3P31_06525 PF02601 Exonuclease VII, large subunit A3P31_06530 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain A3P31_06530 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain A3P31_06535 PF01029 NusB family A3P31_06540 PF03780 Asp23 family, cell envelope-related function A3P31_06545 PF09285 Elongation factor P, C-terminal A3P31_06545 PF08207 Elongation factor P (EF-P) KOW-like domain A3P31_06545 PF01132 Elongation factor P (EF-P) OB domain A3P31_06550 PF01321 Creatinase/Prolidase N-terminal domain A3P31_06550 PF00557 Metallopeptidase family M24 A3P31_06555 PF01016 Ribosomal L27 protein A3P31_06560 PF00829 Ribosomal prokaryotic L21 protein A3P31_06565 PF03960 ArsC family A3P31_06590 PF01361 Tautomerase enzyme A3P31_06610 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) A3P31_06630 PF07859 alpha/beta hydrolase fold A3P31_06635 PF12833 Helix-turn-helix domain A3P31_06640 PF00480 ROK family A3P31_06645 PF02378 Phosphotransferase system, EIIC A3P31_06650 PF01380 SIS domain A3P31_06650 PF00571 CBS domain A3P31_06655 PF00232 Glycosyl hydrolase family 1 A3P31_06675 PF00005 ABC transporter A3P31_06685 PF03051 Peptidase C1-like family A3P31_06695 PF13936 Helix-turn-helix domain A3P31_06710 PF07690 Major Facilitator Superfamily A3P31_06730 PF17841 BID domain of Bartonella effector protein (Bep) A3P31_06730 PF02661 Fic/DOC family A3P31_06740 PF01380 SIS domain A3P31_06760 PF01433 Peptidase family M1 domain A3P31_06760 PF11838 ERAP1-like C-terminal domain A3P31_06765 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain A3P31_06765 PF02129 X-Pro dipeptidyl-peptidase (S15 family) A3P31_06765 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal A3P31_06770 PF00512 His Kinase A (phospho-acceptor) domain A3P31_06770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3P31_06775 PF00072 Response regulator receiver domain A3P31_06775 PF00486 Transcriptional regulatory protein, C terminal A3P31_06780 PF04607 Region found in RelA / SpoT proteins A3P31_06795 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_06800 PF00571 CBS domain A3P31_06800 PF00005 ABC transporter A3P31_06805 PF00483 Nucleotidyl transferase A3P31_06815 PF00557 Metallopeptidase family M24 A3P31_06820 PF00258 Flavodoxin A3P31_06830 PF02350 UDP-N-acetylglucosamine 2-epimerase A3P31_06845 PF02378 Phosphotransferase system, EIIC A3P31_06850 PF00271 Helicase conserved C-terminal domain A3P31_06850 PF00270 DEAD/DEAH box helicase A3P31_06860 PF13520 Amino acid permease A3P31_06870 PF00571 CBS domain A3P31_06870 PF01595 Cyclin M transmembrane N-terminal domain A3P31_06870 PF03471 Transporter associated domain A3P31_06885 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase A3P31_06885 PF09364 XFP N-terminal domain A3P31_06885 PF09363 XFP C-terminal domain A3P31_06895 PF07282 Putative transposase DNA-binding domain A3P31_06895 PF01385 Probable transposase A3P31_06895 PF12323 Helix-turn-helix domain A3P31_06925 PF00664 ABC transporter transmembrane region A3P31_06925 PF00005 ABC transporter A3P31_06940 PF07702 UTRA domain A3P31_06940 PF00392 Bacterial regulatory proteins, gntR family A3P31_06945 PF01156 Inosine-uridine preferring nucleoside hydrolase A3P31_06950 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) A3P31_06955 PF00294 pfkB family carbohydrate kinase A3P31_06955 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) A3P31_06960 PF00210 Ferritin-like domain A3P31_06965 PF03606 C4-dicarboxylate anaerobic carrier A3P31_06975 PF01895 PhoU domain A3P31_06980 PF00005 ABC transporter A3P31_06985 PF00005 ABC transporter A3P31_06990 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_06995 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_07000 PF12849 PBP superfamily domain A3P31_07010 PF00005 ABC transporter A3P31_07015 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_07035 PF00872 Transposase, Mutator family A3P31_07045 PF00485 Phosphoribulokinase / Uridine kinase family A3P31_07065 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_07070 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_07075 PF00497 Bacterial extracellular solute-binding proteins, family 3 A3P31_07080 PF00005 ABC transporter A3P31_07085 PF00497 Bacterial extracellular solute-binding proteins, family 3 A3P31_07090 PF00664 ABC transporter transmembrane region A3P31_07090 PF00005 ABC transporter A3P31_07095 PF00664 ABC transporter transmembrane region A3P31_07095 PF00005 ABC transporter A3P31_07110 PF07690 Major Facilitator Superfamily A3P31_07120 PF00854 POT family A3P31_07125 PF02449 Beta-galactosidase A3P31_07125 PF08532 Beta-galactosidase trimerisation domain A3P31_07125 PF08533 Beta-galactosidase C-terminal domain A3P31_07135 PF03649 Uncharacterised protein family (UPF0014) A3P31_07140 PF00005 ABC transporter A3P31_07170 PF07690 Major Facilitator Superfamily A3P31_07170 PF00083 Sugar (and other) transporter A3P31_07200 PF04960 Glutaminase A3P31_07205 PF08220 DeoR-like helix-turn-helix domain A3P31_07205 PF00455 DeoR C terminal sensor domain A3P31_07210 PF00860 Permease family A3P31_07245 PF13508 Acetyltransferase (GNAT) domain A3P31_07260 PF01471 Putative peptidoglycan binding domain A3P31_07260 PF08924 Domain of unknown function (DUF1906) A3P31_07270 PF07690 Major Facilitator Superfamily A3P31_07275 PF07690 Major Facilitator Superfamily A3P31_07280 PF00230 Major intrinsic protein A3P31_07295 PF00117 Glutamine amidotransferase class-I A3P31_07295 PF03352 Methyladenine glycosylase A3P31_07295 PF13302 Acetyltransferase (GNAT) domain A3P31_07295 PF13673 Acetyltransferase (GNAT) domain A3P31_07295 PF00958 GMP synthase C terminal domain A3P31_07300 PF17312 Bacteriocin helveticin-J A3P31_07310 PF13185 GAF domain A3P31_07320 PF07282 Putative transposase DNA-binding domain A3P31_07320 PF01385 Probable transposase A3P31_07320 PF12323 Helix-turn-helix domain A3P31_07345 PF04552 Sigma-54, DNA binding domain A3P31_07345 PF04963 Sigma-54 factor, core binding domain A3P31_07345 PF00309 Sigma-54 factor, Activator interacting domain (AID) A3P31_07360 PF01116 Fructose-bisphosphate aldolase class-II A3P31_07365 PF00750 tRNA synthetases class I (R) A3P31_07365 PF03485 Arginyl tRNA synthetase N terminal domain A3P31_07365 PF05746 DALR anticodon binding domain A3P31_07370 PF00768 D-alanyl-D-alanine carboxypeptidase A3P31_07370 PF07943 Penicillin-binding protein 5, C-terminal domain A3P31_07375 PF01256 Carbohydrate kinase A3P31_07390 PF14667 Polysaccharide biosynthesis C-terminal domain A3P31_07390 PF01943 Polysaccharide biosynthesis protein A3P31_07395 PF08264 Anticodon-binding domain of tRNA A3P31_07395 PF00133 tRNA synthetases class I (I, L, M and V) A3P31_07395 PF13603 Leucyl-tRNA synthetase, Domain 2 A3P31_07395 PF09334 tRNA synthetases class I (M) A3P31_07405 PF01527 Transposase A3P31_07410 PF13276 HTH-like domain A3P31_07410 PF00665 Integrase core domain A3P31_07410 PF13333 Integrase core domain A3P31_07440 PF02673 Bacitracin resistance protein BacA A3P31_07450 PF00005 ABC transporter A3P31_07455 PF01381 Helix-turn-helix A3P31_07485 PF01051 Initiator Replication protein A3P31_07490 PF01527 Transposase A3P31_07495 PF00665 Integrase core domain A3P31_07495 PF13276 HTH-like domain A3P31_07495 PF13333 Integrase core domain A3P31_07500 PF07690 Major Facilitator Superfamily A3P31_07505 PF02773 S-adenosylmethionine synthetase, C-terminal domain A3P31_07505 PF00438 S-adenosylmethionine synthetase, N-terminal domain A3P31_07505 PF02772 S-adenosylmethionine synthetase, central domain A3P31_07545 PF00575 S1 RNA binding domain A3P31_07550 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3P31_07555 PF09335 SNARE associated Golgi protein A3P31_07565 PF13344 Haloacid dehalogenase-like hydrolase A3P31_07575 PF02872 5'-nucleotidase, C-terminal domain A3P31_07585 PF03009 Glycerophosphoryl diester phosphodiesterase family A3P31_07590 PF01546 Peptidase family M20/M25/M40 A3P31_07595 PF00905 Penicillin binding protein transpeptidase domain A3P31_07595 PF00912 Transglycosylase A3P31_07600 PF00356 Bacterial regulatory proteins, lacI family A3P31_07605 PF01321 Creatinase/Prolidase N-terminal domain A3P31_07605 PF00557 Metallopeptidase family M24 A3P31_07620 PF00924 Mechanosensitive ion channel A3P31_07625 PF00871 Acetokinase family A3P31_07630 PF01725 Ham1 family A3P31_07635 PF01177 Asp/Glu/Hydantoin racemase A3P31_07640 PF10702 Protein of unknown function (DUF2507) A3P31_07645 PF00085 Thioredoxin A3P31_07650 PF01713 Smr domain A3P31_07650 PF00488 MutS domain V A3P31_07660 PF06949 Protein of unknown function (DUF1292) A3P31_07665 PF03652 Holliday junction resolvase A3P31_07670 PF06135 IreB regulatory phosphoprotein A3P31_07675 PF02272 DHHA1 domain A3P31_07675 PF01411 tRNA synthetases class II (A) A3P31_07675 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A3P31_07680 PF00270 DEAD/DEAH box helicase A3P31_07680 PF00271 Helicase conserved C-terminal domain A3P31_07685 PF02272 DHHA1 domain A3P31_07685 PF01368 DHH family A3P31_07690 PF11799 impB/mucB/samB family C-terminal domain A3P31_07690 PF00817 impB/mucB/samB family A3P31_07690 PF11798 IMS family HHH motif A3P31_07695 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain A3P31_07695 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain A3P31_07700 PF02699 Preprotein translocase subunit A3P31_07705 PF05496 Holliday junction DNA helicase RuvB P-loop domain A3P31_07705 PF05491 RuvB C-terminal winged helix domain A3P31_07705 PF17864 RuvB AAA lid domain A3P31_07710 PF07499 RuvA, C-terminal domain A3P31_07710 PF01330 RuvA N terminal domain A3P31_07715 PF01119 DNA mismatch repair protein, C-terminal domain A3P31_07715 PF08676 MutL C terminal dimerisation domain A3P31_07720 PF05190 MutS family domain IV A3P31_07720 PF05192 MutS domain III A3P31_07720 PF05188 MutS domain II A3P31_07720 PF01624 MutS domain I A3P31_07720 PF00488 MutS domain V A3P31_07735 PF13936 Helix-turn-helix domain A3P31_07745 PF00118 TCP-1/cpn60 chaperonin family A3P31_07750 PF00166 Chaperonin 10 Kd subunit A3P31_07770 PF03641 Possible lysine decarboxylase A3P31_07775 PF02629 CoA binding domain A3P31_07775 PF06971 Putative DNA-binding protein N-terminus A3P31_07780 PF00005 ABC transporter A3P31_07780 PF12848 ABC transporter A3P31_07780 PF16326 ABC transporter C-terminal domain A3P31_07785 PF00251 Glycosyl hydrolases family 32 N-terminal domain A3P31_07785 PF08244 Glycosyl hydrolases family 32 C terminal A3P31_07790 PF02378 Phosphotransferase system, EIIC A3P31_07790 PF00367 phosphotransferase system, EIIB A3P31_07790 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 A3P31_07795 PF00933 Glycosyl hydrolase family 3 N terminal domain A3P31_07795 PF01915 Glycosyl hydrolase family 3 C-terminal domain A3P31_07795 PF14310 Fibronectin type III-like domain A3P31_07810 PF00293 NUDIX domain A3P31_07815 PF00206 Lyase A3P31_07815 PF10397 Adenylosuccinate lyase C-terminus A3P31_07820 PF00709 Adenylosuccinate synthetase A3P31_07825 PF00478 IMP dehydrogenase / GMP reductase domain A3P31_07845 PF00814 Glycoprotease family A3P31_07855 PF00814 Glycoprotease family A3P31_07860 PF12822 ECF transporter, substrate-specific component A3P31_07870 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A3P31_07875 PF06156 Initiation control protein YabA A3P31_07885 PF06153 Cyclic-di-AMP receptor A3P31_07890 PF02223 Thymidylate kinase A3P31_07900 PF13662 Toprim domain A3P31_07900 PF02132 RecR protein A3P31_07905 PF02575 YbaB/EbfC DNA-binding family A3P31_07910 PF12169 DNA polymerase III subunits gamma and tau domain III A3P31_07920 PF14437 MafB19-like deaminase A3P31_07940 PF05175 Methyltransferase small domain A3P31_07955 PF00542 Ribosomal protein L7/L12 C-terminal domain A3P31_07955 PF16320 Ribosomal protein L7/L12 dimerisation domain A3P31_07960 PF00466 Ribosomal protein L10 A3P31_07965 PF00497 Bacterial extracellular solute-binding proteins, family 3 A3P31_07970 PF00005 ABC transporter A3P31_07975 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_07980 PF07282 Putative transposase DNA-binding domain A3P31_07980 PF12323 Helix-turn-helix domain A3P31_07980 PF01385 Probable transposase A3P31_07985 PF00687 Ribosomal protein L1p/L10e family A3P31_07990 PF03946 Ribosomal protein L11, N-terminal domain A3P31_07990 PF00298 Ribosomal protein L11, RNA binding domain A3P31_07995 PF02357 Transcription termination factor nusG A3P31_07995 PF00467 KOW motif A3P31_08005 PF00471 Ribosomal protein L33 A3P31_08010 PF00348 Polyprenyl synthetase A3P31_08020 PF02779 Transketolase, pyrimidine binding domain A3P31_08020 PF02780 Transketolase, C-terminal domain A3P31_08020 PF13292 1-deoxy-D-xylulose-5-phosphate synthase A3P31_08025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain A3P31_08025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain A3P31_08040 PF08032 RNA 2'-O ribose methyltransferase substrate binding A3P31_08040 PF00588 SpoU rRNA Methylase family A3P31_08045 PF00636 Ribonuclease III domain A3P31_08050 PF09190 DALR domain A3P31_08050 PF01406 tRNA synthetases class I (C) catalytic domain A3P31_08055 PF00749 tRNA synthetases class I (E and Q), catalytic domain A3P31_08060 PF18073 Rubredoxin metal binding domain A3P31_08065 PF00692 dUTPase A3P31_08075 PF03051 Peptidase C1-like family A3P31_08100 PF00300 Histidine phosphatase superfamily (branch 1) A3P31_08115 PF16916 Dimerisation domain of Zinc Transporter A3P31_08115 PF01545 Cation efflux family A3P31_08125 PF00300 Histidine phosphatase superfamily (branch 1) A3P31_08170 PF01719 Plasmid replication protein A3P31_08170 PF00910 RNA helicase A3P31_08180 PF14659 Phage integrase, N-terminal SAM-like domain A3P31_08180 PF00589 Phage integrase family A3P31_08185 PF00380 Ribosomal protein S9/S16 A3P31_08190 PF00572 Ribosomal protein L13 A3P31_08195 PF01416 tRNA pseudouridine synthase A3P31_08200 PF02361 Cobalt transport protein A3P31_08205 PF07282 Putative transposase DNA-binding domain A3P31_08205 PF12323 Helix-turn-helix domain A3P31_08205 PF01385 Probable transposase A3P31_08210 PF00005 ABC transporter A3P31_08215 PF00005 ABC transporter A3P31_08220 PF01196 Ribosomal protein L17 A3P31_08225 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain A3P31_08225 PF01000 RNA polymerase Rpb3/RpoA insert domain A3P31_08225 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain A3P31_08230 PF00411 Ribosomal protein S11 A3P31_08235 PF00416 Ribosomal protein S13/S18 A3P31_08240 PF00444 Ribosomal protein L36 A3P31_08245 PF01176 Translation initiation factor 1A / IF-1 A3P31_08250 PF05191 Adenylate kinase, active site lid A3P31_08255 PF00344 SecY translocase A3P31_08260 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A A3P31_08265 PF00327 Ribosomal protein L30p/L7e A3P31_08270 PF00333 Ribosomal protein S5, N-terminal domain A3P31_08270 PF03719 Ribosomal protein S5, C-terminal domain A3P31_08275 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast A3P31_08280 PF00347 Ribosomal protein L6 A3P31_08285 PF00410 Ribosomal protein S8 A3P31_08290 PF00253 Ribosomal protein S14p/S29e A3P31_08295 PF00281 Ribosomal protein L5 A3P31_08295 PF00673 ribosomal L5P family C-terminus A3P31_08300 PF00467 KOW motif A3P31_08300 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 A3P31_08305 PF00238 Ribosomal protein L14p/L23e A3P31_08310 PF00366 Ribosomal protein S17 A3P31_08315 PF00831 Ribosomal L29 protein A3P31_08320 PF00252 Ribosomal protein L16p/L10e A3P31_08325 PF00189 Ribosomal protein S3, C-terminal domain A3P31_08325 PF07650 KH domain A3P31_08330 PF00237 Ribosomal protein L22p/L17e A3P31_08335 PF00203 Ribosomal protein S19 A3P31_08340 PF03947 Ribosomal Proteins L2, C-terminal domain A3P31_08340 PF00181 Ribosomal Proteins L2, RNA binding domain A3P31_08345 PF00276 Ribosomal protein L23 A3P31_08350 PF00573 Ribosomal protein L4/L1 family A3P31_08355 PF00297 Ribosomal protein L3 A3P31_08360 PF00338 Ribosomal protein S10p/S20e A3P31_08365 PF14492 Elongation Factor G, domain II A3P31_08365 PF03144 Elongation factor Tu domain 2 A3P31_08365 PF00679 Elongation factor G C-terminus A3P31_08365 PF00009 Elongation factor Tu GTP binding domain A3P31_08365 PF03764 Elongation factor G, domain IV A3P31_08370 PF00177 Ribosomal protein S7p/S5e A3P31_08375 PF00164 Ribosomal protein S12/S23 A3P31_08385 PF04983 RNA polymerase Rpb1, domain 3 A3P31_08385 PF00623 RNA polymerase Rpb1, domain 2 A3P31_08385 PF04997 RNA polymerase Rpb1, domain 1 A3P31_08385 PF04998 RNA polymerase Rpb1, domain 5 A3P31_08385 PF05000 RNA polymerase Rpb1, domain 4 A3P31_08390 PF10385 RNA polymerase beta subunit external 1 domain A3P31_08390 PF00562 RNA polymerase Rpb2, domain 6 A3P31_08390 PF04560 RNA polymerase Rpb2, domain 7 A3P31_08390 PF04563 RNA polymerase beta subunit A3P31_08390 PF04561 RNA polymerase Rpb2, domain 2 A3P31_08390 PF04565 RNA polymerase Rpb2, domain 3 A3P31_08395 PF07724 AAA domain (Cdc48 subfamily) A3P31_08395 PF00004 ATPase family associated with various cellular activities (AAA) A3P31_08395 PF02861 Clp amino terminal domain, pathogenicity island component A3P31_08395 PF17871 AAA lid domain A3P31_08395 PF10431 C-terminal, D2-small domain, of ClpB protein A3P31_08410 PF00152 tRNA synthetases class II (D, K and N) A3P31_08410 PF01336 OB-fold nucleic acid binding domain A3P31_08415 PF01207 Dihydrouridine synthase (Dus) A3P31_08420 PF01430 Hsp33 protein A3P31_08430 PF17862 AAA+ lid domain A3P31_08430 PF06480 FtsH Extracellular A3P31_08430 PF01434 Peptidase family M41 A3P31_08430 PF00004 ATPase family associated with various cellular activities (AAA) A3P31_08435 PF01171 PP-loop family A3P31_08440 PF00575 S1 RNA binding domain A3P31_08440 PF03725 3' exoribonuclease family, domain 2 A3P31_08440 PF01138 3' exoribonuclease family, domain 1 A3P31_08440 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain A3P31_08440 PF00013 KH domain A3P31_08450 PF01479 S4 domain A3P31_08455 PF00271 Helicase conserved C-terminal domain A3P31_08455 PF17757 UvrB interaction domain A3P31_08455 PF00270 DEAD/DEAH box helicase A3P31_08455 PF03461 TRCF domain A3P31_08455 PF02559 CarD-like/TRCF domain A3P31_08460 PF01195 Peptidyl-tRNA hydrolase A3P31_08465 PF00056 lactate/malate dehydrogenase, NAD binding domain A3P31_08465 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain A3P31_08475 PF00842 Alanine racemase, C-terminal domain A3P31_08475 PF01168 Alanine racemase, N-terminal domain A3P31_08480 PF01648 4'-phosphopantetheinyl transferase superfamily A3P31_08485 PF00271 Helicase conserved C-terminal domain A3P31_08485 PF00270 DEAD/DEAH box helicase A3P31_08490 PF08245 Mur ligase middle domain A3P31_08490 PF02875 Mur ligase family, glutamate ligase domain A3P31_08490 PF01225 Mur ligase family, catalytic domain A3P31_08495 PF01197 Ribosomal protein L31 A3P31_08500 PF13520 Amino acid permease A3P31_08505 PF00005 ABC transporter A3P31_08510 PF02653 Branched-chain amino acid transport system / permease component A3P31_08520 PF00464 Serine hydroxymethyltransferase A3P31_08525 PF00128 Alpha amylase, catalytic domain A3P31_08530 PF16874 Glycosyl hydrolase family 36 C-terminal domain A3P31_08530 PF16875 Glycosyl hydrolase family 36 N-terminal domain A3P31_08535 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 A3P31_08540 PF02311 AraC-like ligand binding domain A3P31_08540 PF12833 Helix-turn-helix domain A3P31_08545 PF03577 Peptidase family C69 A3P31_08550 PF00881 Nitroreductase family A3P31_08560 PF01638 HxlR-like helix-turn-helix A3P31_08590 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain A3P31_08590 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain A3P31_08610 PF13936 Helix-turn-helix domain A3P31_08635 PF00005 ABC transporter A3P31_08635 PF13732 Domain of unknown function (DUF4162) A3P31_08655 PF00583 Acetyltransferase (GNAT) family A3P31_08665 PF13936 Helix-turn-helix domain A3P31_08675 PF01161 Phosphatidylethanolamine-binding protein A3P31_08690 PF00117 Glutamine amidotransferase class-I A3P31_08690 PF00958 GMP synthase C terminal domain A3P31_08690 PF02540 NAD synthase A3P31_08700 PF00156 Phosphoribosyl transferase domain A3P31_08705 PF00860 Permease family A3P31_08710 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) A3P31_08715 PF00117 Glutamine amidotransferase class-I A3P31_08715 PF06418 CTP synthase N-terminus A3P31_08720 PF05066 HB1, ASXL, restriction endonuclease HTH domain A3P31_08730 PF01966 HD domain A3P31_08735 PF00128 Alpha amylase, catalytic domain A3P31_08735 PF16657 Maltogenic Amylase, C-terminal domain A3P31_08740 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_08745 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_08750 PF01547 Bacterial extracellular solute-binding protein A3P31_08755 PF03459 TOBE domain A3P31_08755 PF17912 MalK OB fold domain A3P31_08755 PF00005 ABC transporter A3P31_08760 PF13419 Haloacid dehalogenase-like hydrolase A3P31_08765 PF03632 Glycosyl hydrolase family 65 central catalytic domain A3P31_08765 PF03633 Glycosyl hydrolase family 65, C-terminal domain A3P31_08765 PF03636 Glycosyl hydrolase family 65, N-terminal domain A3P31_08770 PF02903 Alpha amylase, N-terminal ig-like domain A3P31_08770 PF00128 Alpha amylase, catalytic domain A3P31_08775 PF16657 Maltogenic Amylase, C-terminal domain A3P31_08775 PF00128 Alpha amylase, catalytic domain A3P31_08780 PF00356 Bacterial regulatory proteins, lacI family A3P31_08785 PF14572 Phosphoribosyl synthetase-associated domain A3P31_08785 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase A3P31_08790 PF00132 Bacterial transferase hexapeptide (six repeats) A3P31_08790 PF12804 MobA-like NTP transferase domain A3P31_08795 PF09182 Bacterial purine repressor, N-terminal A3P31_08795 PF00156 Phosphoribosyl transferase domain A3P31_08800 PF06257 Biofilm formation stimulator VEG A3P31_08805 PF00398 Ribosomal RNA adenine dimethylase A3P31_08810 PF13331 Domain of unknown function (DUF4093) A3P31_08810 PF01751 Toprim domain A3P31_08815 PF01026 TatD related DNase A3P31_08820 PF08264 Anticodon-binding domain of tRNA A3P31_08820 PF09334 tRNA synthetases class I (M) A3P31_08820 PF01588 Putative tRNA binding domain A3P31_08825 PF00690 Cation transporter/ATPase, N-terminus A3P31_08825 PF00689 Cation transporting ATPase, C-terminus A3P31_08835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region A3P31_08840 PF00579 tRNA synthetases class I (W and Y) A3P31_08860 PF00480 ROK family A3P31_08865 PF00232 Glycosyl hydrolase family 1 A3P31_08870 PF02378 Phosphotransferase system, EIIC A3P31_08875 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit A3P31_08885 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit A3P31_08890 PF00392 Bacterial regulatory proteins, gntR family A3P31_08890 PF07702 UTRA domain A3P31_08895 PF00232 Glycosyl hydrolase family 1 A3P31_08905 PF00392 Bacterial regulatory proteins, gntR family A3P31_08905 PF07702 UTRA domain A3P31_08910 PF02378 Phosphotransferase system, EIIC A3P31_08920 PF00232 Glycosyl hydrolase family 1 A3P31_08925 PF00011 Hsp20/alpha crystallin family A3P31_08935 PF03449 Transcription elongation factor, N-terminal A3P31_08935 PF01272 Transcription elongation factor, GreA/GreB, C-term A3P31_08945 PF03051 Peptidase C1-like family A3P31_08950 PF01966 HD domain A3P31_08955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3P31_08955 PF00005 ABC transporter A3P31_08960 PF00005 ABC transporter A3P31_08960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A3P31_08965 PF12911 N-terminal TM domain of oligopeptide transport permease C A3P31_08965 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_08970 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_08975 PF13936 Helix-turn-helix domain A3P31_08980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A3P31_08985 PF00872 Transposase, Mutator family A3P31_08995 PF03051 Peptidase C1-like family A3P31_09005 PF00579 tRNA synthetases class I (W and Y) A3P31_09005 PF01479 S4 domain A3P31_09010 PF00884 Sulfatase A3P31_09015 PF02660 Glycerol-3-phosphate acyltransferase A3P31_09020 PF03816 Cell envelope-related transcriptional attenuator domain A3P31_09030 PF06800 Sugar transport protein A3P31_09045 PF00535 Glycosyl transferase family 2 A3P31_09055 PF00253 Ribosomal protein S14p/S29e A3P31_09080 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system A3P31_09085 PF00300 Histidine phosphatase superfamily (branch 1) A3P31_09105 PF01408 Oxidoreductase family, NAD-binding Rossmann fold A3P31_09110 PF02254 TrkA-N domain A3P31_09110 PF00999 Sodium/hydrogen exchanger family A3P31_09110 PF02080 TrkA-C domain A3P31_09125 PF01476 LysM domain A3P31_09125 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase A3P31_09160 PF13276 HTH-like domain A3P31_09160 PF00665 Integrase core domain A3P31_09160 PF13333 Integrase core domain A3P31_09170 PF02705 K+ potassium transporter A3P31_09175 PF01293 Phosphoenolpyruvate carboxykinase A3P31_09185 PF05649 Peptidase family M13 A3P31_09185 PF01431 Peptidase family M13 A3P31_09190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A3P31_09190 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit A3P31_09195 PF00294 pfkB family carbohydrate kinase A3P31_09210 PF01791 DeoC/LacD family aldolase A3P31_09215 PF07690 Major Facilitator Superfamily A3P31_09225 PF01883 Iron-sulfur cluster assembly protein A3P31_09235 PF13597 Anaerobic ribonucleoside-triphosphate reductase A3P31_09235 PF03477 ATP cone domain A3P31_09245 PF00733 Asparagine synthase A3P31_09245 PF13537 Glutamine amidotransferase domain A3P31_09260 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_09265 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_09270 PF00005 ABC transporter A3P31_09280 PF00582 Universal stress protein family A3P31_09285 PF13350 Tyrosine phosphatase family A3P31_09290 PF00392 Bacterial regulatory proteins, gntR family A3P31_09290 PF07702 UTRA domain A3P31_09300 PF05014 Nucleoside 2-deoxyribosyltransferase A3P31_09315 PF01757 Acyltransferase family A3P31_09330 PF01527 Transposase A3P31_09335 PF03610 PTS system fructose IIA component A3P31_09335 PF03830 PTS system sorbose subfamily IIB component A3P31_09340 PF03613 PTS system mannose/fructose/sorbose family IID component A3P31_09345 PF03609 PTS system sorbose-specific iic component A3P31_09350 PF03830 PTS system sorbose subfamily IIB component A3P31_09355 PF01979 Amidohydrolase family A3P31_09360 PF01380 SIS domain A3P31_09370 PF01055 Glycosyl hydrolases family 31 A3P31_09370 PF13802 Galactose mutarotase-like A3P31_09370 PF16338 Domain of unknown function (DUF4968) A3P31_09370 PF17137 Domain of unknown function (DUF5110) A3P31_09390 PF00999 Sodium/hydrogen exchanger family A3P31_09400 PF01820 D-ala D-ala ligase N-terminus A3P31_09400 PF07478 D-ala D-ala ligase C-terminus A3P31_09425 PF01554 MatE A3P31_09450 PF00324 Amino acid permease A3P31_09465 PF14572 Phosphoribosyl synthetase-associated domain A3P31_09465 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase A3P31_09475 PF00561 alpha/beta hydrolase fold A3P31_09480 PF00535 Glycosyl transferase family 2 A3P31_09490 PF00075 RNase H A3P31_09500 PF04298 Putative neutral zinc metallopeptidase A3P31_09505 PF13091 PLD-like domain A3P31_09505 PF13396 Phospholipase_D-nuclease N-terminal A3P31_09515 PF02146 Sir2 family A3P31_09520 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain A3P31_09520 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain A3P31_09525 PF03741 Integral membrane protein TerC family A3P31_09530 PF04343 Protein of unknown function, DUF488 A3P31_09535 PF02245 Methylpurine-DNA glycosylase (MPG) A3P31_09540 PF00528 Binding-protein-dependent transport system inner membrane component A3P31_09545 PF00005 ABC transporter A3P31_09590 PF03600 Citrate transporter A3P31_09595 PF04011 LemA family A3P31_09600 PF01435 Peptidase family M48 A3P31_09615 PF00005 ABC transporter A3P31_09625 PF02590 Predicted SPOUT methyltransferase A3P31_09630 PF13180 PDZ domain A3P31_09635 PF00753 Metallo-beta-lactamase superfamily A3P31_09650 PF00989 PAS fold A3P31_09650 PF00512 His Kinase A (phospho-acceptor) domain A3P31_09650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3P31_09650 PF00672 HAMP domain A3P31_09655 PF00486 Transcriptional regulatory protein, C terminal A3P31_09655 PF00072 Response regulator receiver domain A3P31_09685 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family A3P31_09690 PF00561 alpha/beta hydrolase fold A3P31_09695 PF01209 ubiE/COQ5 methyltransferase family A3P31_09700 PF05525 Branched-chain amino acid transport protein A3P31_09705 PF00890 FAD binding domain A3P31_09705 PF04205 FMN-binding domain A3P31_09710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A3P31_09710 PF03466 LysR substrate binding domain A3P31_09725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A3P31_09725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A3P31_09735 PF00478 IMP dehydrogenase / GMP reductase domain A3P31_09735 PF00571 CBS domain A3P31_09740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A3P31_09740 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3P31_09745 PF01594 AI-2E family transporter A3P31_09765 PF03372 Endonuclease/Exonuclease/phosphatase family A3P31_09770 PF04226 Transglycosylase associated protein A3P31_09775 PF05532 CsbD-like A3P31_09790 PF13936 Helix-turn-helix domain A3P31_09800 PF13936 Helix-turn-helix domain A3P31_09830 PF03965 Penicillinase repressor A3P31_09850 PF00009 Elongation factor Tu GTP binding domain A3P31_09850 PF00679 Elongation factor G C-terminus A3P31_09850 PF03764 Elongation factor G, domain IV A3P31_09850 PF14492 Elongation Factor G, domain II A3P31_09860 PF00664 ABC transporter transmembrane region A3P31_09860 PF00005 ABC transporter A3P31_09870 PF02645 Uncharacterised protein, DegV family COG1307 A3P31_09875 PF13419 Haloacid dehalogenase-like hydrolase A3P31_09895 PF14492 Elongation Factor G, domain II A3P31_09895 PF00679 Elongation factor G C-terminus A3P31_09895 PF00009 Elongation factor Tu GTP binding domain A3P31_09895 PF03764 Elongation factor G, domain IV A3P31_09920 PF00746 LPXTG cell wall anchor motif