A3P31_00060	SM00257	Lysin motif
A3P31_00175	SM00257	Lysin motif
A3P31_00235	SM00257	Lysin motif
A3P31_00460	SM00857	Resolvase, N terminal domain
A3P31_00555	SM00530	Helix-turn-helix XRE-family like proteins 
A3P31_00580	SM00382	ATPases associated with a variety of cellular activities
A3P31_00590	SM00267	diguanylate cyclase
A3P31_00615	SM00434	DNA Topoisomerase IV
A3P31_00620	SM00387	Histidine kinase-like ATPases
A3P31_00620	SM00433	TopoisomeraseII
A3P31_00635	SM00480	DNA polymerase III beta subunit
A3P31_00640	SM00382	ATPases associated with a variety of cellular activities
A3P31_00640	SM00760	Bacterial dnaA protein helix-turn-helix domain
A3P31_00665	SM01228	A3P31_00665
A3P31_00675	SM01350	A3P31_00675
A3P31_00685	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A3P31_00685	SM00534	ATPase domain of DNA mismatch repair MUTS family
A3P31_00855	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A3P31_00890	SM00062	Bacterial periplasmic substrate-binding proteins
A3P31_00905	SM00382	ATPases associated with a variety of cellular activities
A3P31_00910	SM00382	ATPases associated with a variety of cellular activities
A3P31_00925	SM00382	ATPases associated with a variety of cellular activities
A3P31_01005	SM00530	Helix-turn-helix XRE-family like proteins 
A3P31_01010	SM00382	ATPases associated with a variety of cellular activities
A3P31_01105	SM00382	ATPases associated with a variety of cellular activities
A3P31_01105	SM01086	C-terminal, D2-small domain, of ClpB protein
A3P31_01275	SM00354	helix_turn _helix lactose operon repressor
A3P31_01280	SM00640	Glycosyl hydrolases family 32
A3P31_01295	SM00506	Appr-1"-p processing enzyme
A3P31_01300	SM00382	ATPases associated with a variety of cellular activities
A3P31_01370	SM00855	Phosphoglycerate mutase family
A3P31_01375	SM00855	Phosphoglycerate mutase family
A3P31_01390	SM00382	ATPases associated with a variety of cellular activities
A3P31_01455	SM00470	ParB-like nuclease domain
A3P31_01465	SM00470	ParB-like nuclease domain
A3P31_01485	SM00382	ATPases associated with a variety of cellular activities
A3P31_01490	SM00382	ATPases associated with a variety of cellular activities
A3P31_01495	SM00448	cheY-homologous receiver domain
A3P31_01495	SM00862	Transcriptional regulatory protein, C terminal
A3P31_01500	SM00387	Histidine kinase-like ATPases
A3P31_01500	SM00388	His Kinase A (phosphoacceptor) domain
A3P31_01515	SM00382	ATPases associated with a variety of cellular activities
A3P31_01530	SM00420	helix_turn_helix, Deoxyribose operon repressor
A3P31_01530	SM01134	A3P31_01530
A3P31_01555	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3P31_01565	SM00382	ATPases associated with a variety of cellular activities
A3P31_01600	SM00382	ATPases associated with a variety of cellular activities
A3P31_01615	SM00966	SpoVT / AbrB like domain 
A3P31_01655	SM00072	Guanylate kinase homologues.
A3P31_01700	SM00382	ATPases associated with a variety of cellular activities
A3P31_01710	SM00855	Phosphoglycerate mutase family
A3P31_01740	SM00831	Cation transporter/ATPase, N-terminus
A3P31_01840	SM00841	Elongation factor P, C-terminal
A3P31_01840	SM01185	A3P31_01840
A3P31_01845	SM01061	CAT RNA binding domain
A3P31_01950	SM00479	A3P31_01950
A3P31_01965	SM00892	DNA/RNA non-specific endonuclease
A3P31_01975	SM00382	ATPases associated with a variety of cellular activities
A3P31_01990	SM00849	Metallo-beta-lactamase superfamily
A3P31_02005	SM00347	helix_turn_helix multiple antibiotic resistance protein
A3P31_02060	SM00530	Helix-turn-helix XRE-family like proteins 
A3P31_02410	SM00487	DEAD-like helicases superfamily
A3P31_02410	SM00490	helicase superfamily c-terminal domain
A3P31_02505	SM00450	Rhodanese Homology Domain
A3P31_02515	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A3P31_02515	SM00866	A3P31_02515
A3P31_02550	SM00382	ATPases associated with a variety of cellular activities
A3P31_02555	SM00831	Cation transporter/ATPase, N-terminus
A3P31_02575	SM00731	SprT homologues.
A3P31_02590	SM00047	Lysozyme subfamily 2
A3P31_02600	SM00292	breast cancer carboxy-terminal domain
A3P31_02600	SM00532	Ligase N family
A3P31_02620	SM00845	GatB domain
A3P31_02625	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A3P31_02655	SM00382	ATPases associated with a variety of cellular activities
A3P31_02675	SM00382	ATPases associated with a variety of cellular activities
A3P31_02710	SM00530	Helix-turn-helix XRE-family like proteins 
A3P31_02725	SM00487	DEAD-like helicases superfamily
A3P31_02725	SM00974	A3P31_02725
A3P31_02815	SM00100	Cyclic nucleotide-monophosphate binding domain
A3P31_02815	SM00419	helix_turn_helix, cAMP Regulatory protein
A3P31_02900	SM00382	ATPases associated with a variety of cellular activities
A3P31_02940	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A3P31_02940	SM00866	A3P31_02940
A3P31_02955	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A3P31_02955	SM00474	3'-5' exonuclease
A3P31_02955	SM00475	5'-3' exonuclease
A3P31_02955	SM00482	DNA polymerase A domain
A3P31_02960	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A3P31_02960	SM01232	A3P31_02960
A3P31_02985	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A3P31_03035	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3P31_03055	SM00448	cheY-homologous receiver domain
A3P31_03055	SM00862	Transcriptional regulatory protein, C terminal
A3P31_03060	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A3P31_03060	SM00387	Histidine kinase-like ATPases
A3P31_03060	SM00388	His Kinase A (phosphoacceptor) domain
A3P31_03075	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A3P31_03090	SM00873	B3/4 domain
A3P31_03090	SM00874	tRNA synthetase B5 domain
A3P31_03090	SM00896	Ferredoxin-fold anticodon binding domain
A3P31_03135	SM00450	Rhodanese Homology Domain
A3P31_03150	SM01230	A3P31_03150
A3P31_03215	SM01091	Transporter associated domain
A3P31_03230	SM00382	ATPases associated with a variety of cellular activities
A3P31_03230	SM01086	C-terminal, D2-small domain, of ClpB protein
A3P31_03270	SM01118	A3P31_03270
A3P31_03275	SM00954	Region found in RelA / SpoT proteins
A3P31_03325	SM00382	ATPases associated with a variety of cellular activities
A3P31_03325	SM00843	A3P31_03325
A3P31_03345	SM00530	Helix-turn-helix XRE-family like proteins 
A3P31_03355	SM00382	ATPases associated with a variety of cellular activities
A3P31_03360	SM00322	K homology RNA-binding domain
A3P31_03360	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3P31_03375	SM00487	DEAD-like helicases superfamily
A3P31_03375	SM00490	helicase superfamily c-terminal domain
A3P31_03390	SM00490	helicase superfamily c-terminal domain
A3P31_03390	SM00957	SecA DEAD-like domain
A3P31_03390	SM00958	SecA preprotein cross-linking domain
A3P31_03395	SM00937	A3P31_03395
A3P31_03450	SM01038	Beta galactosidase small chain
A3P31_03460	SM00354	helix_turn _helix lactose operon repressor
A3P31_03485	SM00650	Ribosomal RNA adenine dimethylases
A3P31_03535	SM00487	DEAD-like helicases superfamily
A3P31_03535	SM00490	helicase superfamily c-terminal domain
A3P31_03540	SM00382	ATPases associated with a variety of cellular activities
A3P31_03615	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A3P31_03630	SM01192	A3P31_03630
A3P31_03630	SM01193	A3P31_03630
A3P31_03640	SM00316	Ribosomal protein S1-like RNA-binding domain
A3P31_03640	SM00955	A3P31_03640
A3P31_03670	SM00986	Uracil DNA glycosylase superfamily
A3P31_03670	SM00987	UreE urease accessory protein, C-terminal domain 
A3P31_03685	SM00479	A3P31_03685
A3P31_03695	SM00382	ATPases associated with a variety of cellular activities
A3P31_03855	SM00448	cheY-homologous receiver domain
A3P31_03855	SM00862	Transcriptional regulatory protein, C terminal
A3P31_03860	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A3P31_03860	SM00387	Histidine kinase-like ATPases
A3P31_03860	SM00388	His Kinase A (phosphoacceptor) domain
A3P31_03915	SM00937	A3P31_03915
A3P31_03965	SM00382	ATPases associated with a variety of cellular activities
A3P31_03990	SM01234	A3P31_03990
A3P31_04015	SM00382	ATPases associated with a variety of cellular activities
A3P31_04025	SM00363	S4 RNA-binding domain
A3P31_04025	SM01390	A3P31_04025
A3P31_04040	SM00981	A3P31_04040
A3P31_04045	SM00363	S4 RNA-binding domain
A3P31_04055	SM00831	Cation transporter/ATPase, N-terminus
A3P31_04120	SM00740	A3P31_04120
A3P31_04145	SM00842	Cell division protein FtsA
A3P31_04150	SM00864	Tubulin/FtsZ family, GTPase domain
A3P31_04150	SM00865	Tubulin/FtsZ family, C-terminal domain
A3P31_04165	SM00363	S4 RNA-binding domain
A3P31_04180	SM00357	Cold shock protein domain
A3P31_04215	SM00855	Phosphoglycerate mutase family
A3P31_04225	SM00382	ATPases associated with a variety of cellular activities
A3P31_04235	SM00849	Metallo-beta-lactamase superfamily
A3P31_04255	SM00838	Elongation factor G C-terminus
A3P31_04285	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3P31_04290	SM00849	Metallo-beta-lactamase superfamily
A3P31_04305	SM01387	A3P31_04305
A3P31_04310	SM00849	Metallo-beta-lactamase superfamily
A3P31_04330	SM00382	ATPases associated with a variety of cellular activities
A3P31_04330	SM00994	ClpX C4-type zinc finger
A3P31_04330	SM01086	C-terminal, D2-small domain, of ClpB protein
A3P31_04340	SM00226	Low molecular weight phosphatase family
A3P31_04510	SM00382	ATPases associated with a variety of cellular activities
A3P31_04625	SM00910	A3P31_04625
A3P31_04635	SM00487	DEAD-like helicases superfamily
A3P31_04635	SM00490	helicase superfamily c-terminal domain
A3P31_04660	SM01101	A3P31_04660
A3P31_04670	SM00479	A3P31_04670
A3P31_04735	SM00465	GIY-YIG type nucleases (URI domain)
A3P31_04780	SM00481	DNA polymerase alpha chain like domain
A3P31_04825	SM00363	S4 RNA-binding domain
A3P31_04830	SM00257	Lysin motif
A3P31_04845	SM00316	Ribosomal protein S1-like RNA-binding domain
A3P31_04855	SM00411	bacterial (prokaryotic) histone like domain
A3P31_04860	SM00028	Tetratricopeptide repeats
A3P31_04865	SM00487	DEAD-like helicases superfamily
A3P31_04865	SM00490	helicase superfamily c-terminal domain
A3P31_04900	SM00487	DEAD-like helicases superfamily
A3P31_04900	SM00490	helicase superfamily c-terminal domain
A3P31_04935	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A3P31_04935	SM00245	tail specific protease
A3P31_04955	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A3P31_04955	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A3P31_04955	SM00493	A3P31_04955
A3P31_04975	SM00382	ATPases associated with a variety of cellular activities
A3P31_04975	SM01086	C-terminal, D2-small domain, of ClpB protein
A3P31_05090	SM00382	ATPases associated with a variety of cellular activities
A3P31_05150	SM00382	ATPases associated with a variety of cellular activities
A3P31_05205	SM00382	ATPases associated with a variety of cellular activities
A3P31_05225	SM01266	A3P31_05225
A3P31_05230	SM01207	A3P31_05230
A3P31_05235	SM00387	Histidine kinase-like ATPases
A3P31_05235	SM00433	TopoisomeraseII
A3P31_05240	SM00434	DNA Topoisomerase IV
A3P31_05250	SM01131	A3P31_05250
A3P31_05255	SM00341	Helicase and RNase D C-terminal
A3P31_05255	SM00487	DEAD-like helicases superfamily
A3P31_05255	SM00490	helicase superfamily c-terminal domain
A3P31_05255	SM00956	A3P31_05255
A3P31_05290	SM00347	helix_turn_helix multiple antibiotic resistance protein
A3P31_05300	SM00851	MGS-like domain
A3P31_05300	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A3P31_05305	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A3P31_05310	SM00363	S4 RNA-binding domain
A3P31_05345	SM00981	A3P31_05345
A3P31_05375	SM00478	endonuclease III
A3P31_05395	SM00479	A3P31_05395
A3P31_05395	SM00487	DEAD-like helicases superfamily
A3P31_05395	SM00491	A3P31_05395
A3P31_05430	SM00382	ATPases associated with a variety of cellular activities
A3P31_05435	SM00382	ATPases associated with a variety of cellular activities
A3P31_05485	SM00855	Phosphoglycerate mutase family
A3P31_05610	SM00382	ATPases associated with a variety of cellular activities
A3P31_05625	SM00382	ATPases associated with a variety of cellular activities
A3P31_05630	SM00382	ATPases associated with a variety of cellular activities
A3P31_05640	SM00244	prohibitin homologues
A3P31_05705	SM00851	MGS-like domain
A3P31_05705	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A3P31_05705	SM01209	A3P31_05705
A3P31_05710	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A3P31_05735	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A3P31_05800	SM00382	ATPases associated with a variety of cellular activities
A3P31_05805	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A3P31_05825	SM00062	Bacterial periplasmic substrate-binding proteins
A3P31_05825	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A3P31_05830	SM00382	ATPases associated with a variety of cellular activities
A3P31_05850	SM00400	zinc finger
A3P31_05850	SM00493	A3P31_05850
A3P31_05965	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3P31_05965	SM00954	Region found in RelA / SpoT proteins
A3P31_05995	SM00870	A3P31_05995
A3P31_06025	SM00382	ATPases associated with a variety of cellular activities
A3P31_06025	SM00930	A3P31_06025
A3P31_06070	SM00382	ATPases associated with a variety of cellular activities
A3P31_06080	SM01192	A3P31_06080
A3P31_06080	SM01193	A3P31_06080
A3P31_06085	SM00014	Acid phosphatase homologues
A3P31_06100	SM00831	Cation transporter/ATPase, N-terminus
A3P31_06120	SM00155	Phospholipase D. Active site motifs.
A3P31_06155	SM00838	Elongation factor G C-terminus
A3P31_06160	SM00271	DnaJ molecular chaperone homology domain
A3P31_06185	SM00382	ATPases associated with a variety of cellular activities
A3P31_06190	SM00904	Riboflavin kinase
A3P31_06220	SM00316	Ribosomal protein S1-like RNA-binding domain
A3P31_06220	SM00322	K homology RNA-binding domain
A3P31_06230	SM00479	A3P31_06230
A3P31_06230	SM00481	DNA polymerase alpha chain like domain
A3P31_06240	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A3P31_06280	SM00563	Phosphate acyltransferases
A3P31_06290	SM00382	ATPases associated with a variety of cellular activities
A3P31_06295	SM00382	ATPases associated with a variety of cellular activities
A3P31_06315	SM00986	Uracil DNA glycosylase superfamily
A3P31_06315	SM00987	UreE urease accessory protein, C-terminal domain 
A3P31_06350	SM00382	ATPases associated with a variety of cellular activities
A3P31_06350	SM00962	SRP54-type protein, GTPase domain
A3P31_06350	SM00963	SRP54-type protein, helical bundle domain
A3P31_06365	SM00382	ATPases associated with a variety of cellular activities
A3P31_06365	SM00962	SRP54-type protein, GTPase domain
A3P31_06365	SM00963	SRP54-type protein, helical bundle domain
A3P31_06370	SM00968	SMC proteins Flexible Hinge Domain
A3P31_06375	SM00358	Double-stranded RNA binding motif
A3P31_06375	SM00535	Ribonuclease III family
A3P31_06400	SM00382	ATPases associated with a variety of cellular activities
A3P31_06405	SM00382	ATPases associated with a variety of cellular activities
A3P31_06420	SM00487	DEAD-like helicases superfamily
A3P31_06420	SM00490	helicase superfamily c-terminal domain
A3P31_06425	SM01120	A3P31_06425
A3P31_06425	SM01121	A3P31_06425
A3P31_06440	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
A3P31_06455	SM00220	Serine/Threonine protein kinases, catalytic domain
A3P31_06455	SM00740	A3P31_06455
A3P31_06460	SM00331	Sigma factor PP2C-like phosphatases
A3P31_06460	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A3P31_06475	SM00487	DEAD-like helicases superfamily
A3P31_06475	SM00490	helicase superfamily c-terminal domain
A3P31_06480	SM01409	A3P31_06480
A3P31_06485	SM00072	Guanylate kinase homologues.
A3P31_06510	SM00363	S4 RNA-binding domain
A3P31_06545	SM00841	Elongation factor P, C-terminal
A3P31_06545	SM01185	A3P31_06545
A3P31_06635	SM00342	helix_turn_helix, arabinose operon control protein
A3P31_06665	SM00850	LytTr DNA-binding domain
A3P31_06675	SM00382	ATPases associated with a variety of cellular activities
A3P31_06705	SM00422	helix_turn_helix, mercury resistance
A3P31_06765	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
A3P31_06765	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
A3P31_06770	SM00387	Histidine kinase-like ATPases
A3P31_06770	SM00388	His Kinase A (phosphoacceptor) domain
A3P31_06775	SM00448	cheY-homologous receiver domain
A3P31_06775	SM00862	Transcriptional regulatory protein, C terminal
A3P31_06780	SM00954	Region found in RelA / SpoT proteins
A3P31_06800	SM00382	ATPases associated with a variety of cellular activities
A3P31_06850	SM00487	DEAD-like helicases superfamily
A3P31_06850	SM00490	helicase superfamily c-terminal domain
A3P31_06870	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3P31_06870	SM01091	Transporter associated domain
A3P31_06900	SM01321	A3P31_06900
A3P31_06925	SM00382	ATPases associated with a variety of cellular activities
A3P31_06940	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A3P31_06940	SM00866	A3P31_06940
A3P31_06980	SM00382	ATPases associated with a variety of cellular activities
A3P31_06985	SM00382	ATPases associated with a variety of cellular activities
A3P31_07010	SM00382	ATPases associated with a variety of cellular activities
A3P31_07015	SM00062	Bacterial periplasmic substrate-binding proteins
A3P31_07045	SM00382	ATPases associated with a variety of cellular activities
A3P31_07075	SM00062	Bacterial periplasmic substrate-binding proteins
A3P31_07075	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A3P31_07080	SM00382	ATPases associated with a variety of cellular activities
A3P31_07085	SM00062	Bacterial periplasmic substrate-binding proteins
A3P31_07085	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A3P31_07090	SM00382	ATPases associated with a variety of cellular activities
A3P31_07095	SM00382	ATPases associated with a variety of cellular activities
A3P31_07100	SM00347	helix_turn_helix multiple antibiotic resistance protein
A3P31_07140	SM00382	ATPases associated with a variety of cellular activities
A3P31_07160	SM00347	helix_turn_helix multiple antibiotic resistance protein
A3P31_07190	SM00014	Acid phosphatase homologues
A3P31_07205	SM00420	helix_turn_helix, Deoxyribose operon repressor
A3P31_07205	SM01134	A3P31_07205
A3P31_07315	SM01321	A3P31_07315
A3P31_07365	SM00836	DALR anticodon binding domain
A3P31_07365	SM01016	Arginyl tRNA synthetase N terminal dom
A3P31_07400	SM00014	Acid phosphatase homologues
A3P31_07425	SM00530	Helix-turn-helix XRE-family like proteins 
A3P31_07430	SM00530	Helix-turn-helix XRE-family like proteins 
A3P31_07450	SM00382	ATPases associated with a variety of cellular activities
A3P31_07455	SM00530	Helix-turn-helix XRE-family like proteins 
A3P31_07545	SM00316	Ribosomal protein S1-like RNA-binding domain
A3P31_07600	SM00354	helix_turn _helix lactose operon repressor
A3P31_07650	SM00463	Small MutS-related domain
A3P31_07650	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A3P31_07650	SM00534	ATPase domain of DNA mismatch repair MUTS family
A3P31_07665	SM00732	Likely ribonuclease with RNase H fold.
A3P31_07675	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A3P31_07680	SM00487	DEAD-like helicases superfamily
A3P31_07680	SM00490	helicase superfamily c-terminal domain
A3P31_07700	SM01323	A3P31_07700
A3P31_07705	SM00382	ATPases associated with a variety of cellular activities
A3P31_07710	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3P31_07715	SM00853	MutL C terminal dimerisation domain
A3P31_07715	SM01340	A3P31_07715
A3P31_07720	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A3P31_07720	SM00534	ATPase domain of DNA mismatch repair MUTS family
A3P31_07750	SM00883	Chaperonin 10 Kd subunit
A3P31_07760	SM00850	LytTr DNA-binding domain
A3P31_07775	SM00881	CoA binding domain
A3P31_07780	SM00382	ATPases associated with a variety of cellular activities
A3P31_07785	SM00640	Glycosyl hydrolases family 32
A3P31_07795	SM01217	A3P31_07795
A3P31_07800	SM00342	helix_turn_helix, arabinose operon control protein
A3P31_07815	SM00998	Adenylosuccinate lyase C-terminus
A3P31_07820	SM00788	Adenylosuccinate synthetase
A3P31_07825	SM01240	A3P31_07825
A3P31_07900	SM00493	A3P31_07900
A3P31_07910	SM00382	ATPases associated with a variety of cellular activities
A3P31_07965	SM00062	Bacterial periplasmic substrate-binding proteins
A3P31_07970	SM00382	ATPases associated with a variety of cellular activities
A3P31_07990	SM00649	Ribosomal protein L11/L12
A3P31_07995	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A3P31_07995	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A3P31_08020	SM00861	Transketolase, pyrimidine binding domain
A3P31_08040	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A3P31_08050	SM00840	A3P31_08050
A3P31_08060	SM00382	ATPases associated with a variety of cellular activities
A3P31_08100	SM00855	Phosphoglycerate mutase family
A3P31_08120	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3P31_08125	SM00855	Phosphoglycerate mutase family
A3P31_08210	SM00382	ATPases associated with a variety of cellular activities
A3P31_08215	SM00382	ATPases associated with a variety of cellular activities
A3P31_08225	SM00662	RNA polymerases D
A3P31_08245	SM00316	Ribosomal protein S1-like RNA-binding domain
A3P31_08300	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A3P31_08305	SM01374	A3P31_08305
A3P31_08325	SM00322	K homology RNA-binding domain
A3P31_08340	SM01382	A3P31_08340
A3P31_08340	SM01383	A3P31_08340
A3P31_08360	SM01403	A3P31_08360
A3P31_08365	SM00838	Elongation factor G C-terminus
A3P31_08365	SM00889	Elongation factor G, domain IV
A3P31_08385	SM00663	RNA polymerase I subunit A N-terminus
A3P31_08395	SM00382	ATPases associated with a variety of cellular activities
A3P31_08395	SM01086	C-terminal, D2-small domain, of ClpB protein
A3P31_08430	SM00382	ATPases associated with a variety of cellular activities
A3P31_08440	SM00316	Ribosomal protein S1-like RNA-binding domain
A3P31_08450	SM00363	S4 RNA-binding domain
A3P31_08455	SM00487	DEAD-like helicases superfamily
A3P31_08455	SM00490	helicase superfamily c-terminal domain
A3P31_08455	SM00982	A3P31_08455
A3P31_08455	SM01058	CarD-like/TRCF domain
A3P31_08475	SM01005	Alanine racemase, C-terminal domain
A3P31_08485	SM00487	DEAD-like helicases superfamily
A3P31_08485	SM00490	helicase superfamily c-terminal domain
A3P31_08505	SM00382	ATPases associated with a variety of cellular activities
A3P31_08525	SM00642	Alpha-amylase domain
A3P31_08540	SM00342	helix_turn_helix, arabinose operon control protein
A3P31_08620	SM00857	Resolvase, N terminal domain
A3P31_08635	SM00382	ATPases associated with a variety of cellular activities
A3P31_08650	SM00857	Resolvase, N terminal domain
A3P31_08730	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3P31_08735	SM00642	Alpha-amylase domain
A3P31_08755	SM00382	ATPases associated with a variety of cellular activities
A3P31_08770	SM00642	Alpha-amylase domain
A3P31_08775	SM00642	Alpha-amylase domain
A3P31_08780	SM00354	helix_turn _helix lactose operon repressor
A3P31_08785	SM01400	A3P31_08785
A3P31_08805	SM00650	Ribosomal RNA adenine dimethylases
A3P31_08810	SM00493	A3P31_08810
A3P31_08825	SM00831	Cation transporter/ATPase, N-terminus
A3P31_08890	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A3P31_08890	SM00866	A3P31_08890
A3P31_08905	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A3P31_08905	SM00866	A3P31_08905
A3P31_08955	SM00382	ATPases associated with a variety of cellular activities
A3P31_08960	SM00382	ATPases associated with a variety of cellular activities
A3P31_09005	SM00363	S4 RNA-binding domain
A3P31_09015	SM01207	A3P31_09015
A3P31_09085	SM00855	Phosphoglycerate mutase family
A3P31_09120	SM00287	Bacterial SH3 domain homologues
A3P31_09120	SM00641	Glycosyl hydrolases family 25
A3P31_09125	SM00047	Lysozyme subfamily 2
A3P31_09210	SM01133	A3P31_09210
A3P31_09270	SM00382	ATPases associated with a variety of cellular activities
A3P31_09290	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A3P31_09290	SM00866	A3P31_09290
A3P31_09365	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A3P31_09365	SM00866	A3P31_09365
A3P31_09465	SM01400	A3P31_09465
A3P31_09505	SM00155	Phospholipase D. Active site motifs.
A3P31_09540	SM00062	Bacterial periplasmic substrate-binding proteins
A3P31_09545	SM00382	ATPases associated with a variety of cellular activities
A3P31_09555	SM00507	HNH nucleases
A3P31_09605	SM00342	helix_turn_helix, arabinose operon control protein
A3P31_09615	SM00382	ATPases associated with a variety of cellular activities
A3P31_09630	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A3P31_09635	SM00849	Metallo-beta-lactamase superfamily
A3P31_09650	SM00091	PAS domain
A3P31_09650	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A3P31_09650	SM00387	Histidine kinase-like ATPases
A3P31_09650	SM00388	His Kinase A (phosphoacceptor) domain
A3P31_09655	SM00448	cheY-homologous receiver domain
A3P31_09655	SM00862	Transcriptional regulatory protein, C terminal
A3P31_09675	SM00563	Phosphate acyltransferases
A3P31_09705	SM00900	A3P31_09705
A3P31_09735	SM01240	A3P31_09735
A3P31_09760	SM00487	DEAD-like helicases superfamily
A3P31_09760	SM00490	helicase superfamily c-terminal domain
A3P31_09850	SM00838	Elongation factor G C-terminus
A3P31_09850	SM00889	Elongation factor G, domain IV
A3P31_09855	SM00530	Helix-turn-helix XRE-family like proteins 
A3P31_09860	SM00382	ATPases associated with a variety of cellular activities
A3P31_09895	SM00889	Elongation factor G, domain IV
