llmg_0001 PF00308 Bacterial dnaA protein llmg_0001 PF08299 Bacterial dnaA protein helix-turn-helix llmg_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain llmg_0002 PF02767 DNA polymerase III beta subunit, central domain llmg_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain llmg_0003 PF12705 PD-(D/E)XK nuclease superfamily llmg_0004 PF00580 UvrD/REP helicase N-terminal domain llmg_0004 PF12705 PD-(D/E)XK nuclease superfamily llmg_0004 PF13361 UvrD-like helicase C-terminal domain llmg_0005 PF06107 llmg_0005 llmg_0006 PF01381 Helix-turn-helix llmg_0007 PF01926 50S ribosome-binding GTPase llmg_0007 PF06071 Protein of unknown function (DUF933) llmg_0008 PF01381 Helix-turn-helix llmg_0011 PF13238 AAA domain llmg_0012 PF01195 Peptidyl-tRNA hydrolase llmg_0013 PF00270 DEAD/DEAH box helicase llmg_0013 PF00271 Helicase conserved C-terminal domain llmg_0013 PF02559 CarD-like/TRCF domain llmg_0013 PF03461 TRCF domain llmg_0015 PF01479 S4 domain llmg_0016 PF04977 Septum formation initiator llmg_0018 PF13354 Beta-lactamase enzyme family llmg_0018 PF13457 SH3-like domain llmg_0019 PF01171 PP-loop family llmg_0019 PF11734 TilS substrate C-terminal domain llmg_0020 PF00156 Phosphoribosyl transferase domain llmg_0021 PF00004 ATPase family associated with various cellular activities (AAA) llmg_0021 PF01434 Peptidase family M41 llmg_0021 PF06480 FtsH Extracellular llmg_0022 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit llmg_0022 PF02378 Phosphotransferase system, EIIC llmg_0023 PF00874 PRD domain llmg_0023 PF05043 Mga helix-turn-helix domain llmg_0023 PF08280 M protein trans-acting positive regulator (MGA) HTH domain llmg_0024 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 llmg_0025 PF01232 Mannitol dehydrogenase Rossmann domain llmg_0025 PF08125 Mannitol dehydrogenase C-terminal domain llmg_0026 PF04545 Sigma-70, region 4 llmg_0030 PF03288 Poxvirus D5 protein-like llmg_0030 PF08706 llmg_0030 llmg_0031 PF08708 Primase C terminal 1 (PriCT-1) llmg_0031 PF09250 Bifunctional DNA primase/polymerase, N-terminal llmg_0037 PF07868 llmg_0037 llmg_0038 PF01381 Helix-turn-helix llmg_0041 PF01381 Helix-turn-helix llmg_0045 PF13930 DNA/RNA non-specific endonuclease llmg_0049 PF00665 Integrase core domain llmg_0050 PF01695 IstB-like ATP binding protein llmg_0054 PF08951 Enterocin A Immunity llmg_0055 PF00589 Phage integrase family llmg_0055 PF14659 Phage integrase, N-terminal SAM-like domain llmg_0056 PF06028 Alpha/beta hydrolase of unknown function (DUF915) llmg_0061 PF13673 Acetyltransferase (GNAT) domain llmg_0062 PF05154 llmg_0062 llmg_0063 PF00916 llmg_0063 llmg_0063 PF01740 STAS domain llmg_0064 PF00872 llmg_0064 llmg_0065 PF13527 Acetyltransferase (GNAT) domain llmg_0066 PF00155 Aminotransferase class I and II llmg_0067 PF02565 Recombination protein O C terminal llmg_0067 PF11967 Recombination protein O N terminal llmg_0069 PF12844 Helix-turn-helix domain llmg_0070 PF07690 Major Facilitator Superfamily llmg_0071 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain llmg_0071 PF07992 Pyridine nucleotide-disulphide oxidoreductase llmg_0072 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) llmg_0072 PF00364 Biotin-requiring enzyme llmg_0072 PF02817 e3 binding domain llmg_0073 PF02779 Transketolase, pyrimidine binding domain llmg_0073 PF02780 Transketolase, C-terminal domain llmg_0074 PF00676 Dehydrogenase E1 component llmg_0075 PF03099 Biotin/lipoate A/B protein ligase family llmg_0075 PF10437 Bacterial lipoate protein ligase C-terminus llmg_0076 PF03009 Glycerophosphoryl diester phosphodiesterase family llmg_0077 PF01966 HD domain llmg_0079 PF00579 tRNA synthetases class I (W and Y) llmg_0080 PF02566 OsmC-like protein llmg_0081 PF13520 Amino acid permease llmg_0083 PF02504 Fatty acid synthesis protein llmg_0084 PF08282 haloacid dehalogenase-like hydrolase llmg_0085 PF00005 ABC transporter llmg_0085 PF12848 ABC transporter llmg_0086 PF05360 llmg_0086 llmg_0087 PF00106 short chain dehydrogenase llmg_0088 PF13518 Helix-turn-helix domain llmg_0089 PF00440 Bacterial regulatory proteins, tetR family llmg_0091 PF01053 Cys/Met metabolism PLP-dependent enzyme llmg_0092 PF00106 short chain dehydrogenase llmg_0093 PF00582 Universal stress protein family llmg_0095 PF01738 Dienelactone hydrolase family llmg_0096 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily llmg_0097 PF01613 Flavin reductase like domain llmg_0098 PF00471 Ribosomal protein L33 llmg_0099 PF01783 Ribosomal L32p protein family llmg_0100 PF00122 E1-E2 ATPase llmg_0100 PF00702 haloacid dehalogenase-like hydrolase llmg_0101 PF03988 llmg_0101 llmg_0102 PF02195 ParB-like nuclease domain llmg_0102 PF08535 KorB domain llmg_0103 PF05496 Holliday junction DNA helicase ruvB N-terminus llmg_0103 PF12002 MgsA AAA+ ATPase C terminal llmg_0103 PF16193 llmg_0103 llmg_0104 PF00583 Acetyltransferase (GNAT) family llmg_0105 PF11217 Protein of unknown function (DUF3013) llmg_0106 PF00005 ABC transporter llmg_0106 PF12848 ABC transporter llmg_0108 PF08241 Methyltransferase domain llmg_0109 PF13376 llmg_0109 llmg_0110 PF06325 Ribosomal protein L11 methyltransferase (PrmA) llmg_0111 PF04452 RNA methyltransferase llmg_0112 PF01522 Polysaccharide deacetylase llmg_0113 PF02824 TGS domain llmg_0113 PF04607 Region found in RelA / SpoT proteins llmg_0113 PF13291 ACT domain llmg_0113 PF13328 HD domain llmg_0114 PF00535 Glycosyl transferase family 2 llmg_0115 PF02580 D-Tyr-tRNA(Tyr) deacylase llmg_0116 PF06736 llmg_0116 llmg_0117 PF13419 Haloacid dehalogenase-like hydrolase llmg_0118 PF13520 Amino acid permease llmg_0119 PF01553 Acyltransferase llmg_0120 PF01047 MarR family llmg_0121 PF01527 Transposase llmg_0122 PF00665 Integrase core domain llmg_0122 PF13276 llmg_0122 llmg_0123 PF02525 Flavodoxin-like fold llmg_0124 PF01043 SecA preprotein cross-linking domain llmg_0124 PF02810 SEC-C motif llmg_0124 PF07516 SecA Wing and Scaffold domain llmg_0124 PF07517 SecA DEAD-like domain llmg_0125 PF00793 DAHP synthetase I family llmg_0126 PF00381 PTS HPr component phosphorylation site llmg_0127 PF00391 PEP-utilising enzyme, mobile domain llmg_0127 PF02896 PEP-utilising enzyme, TIM barrel domain llmg_0127 PF05524 PEP-utilising enzyme, N-terminal llmg_0128 PF02575 YbaB/EbfC DNA-binding family llmg_0130 PF12146 Putative lysophospholipase llmg_0132 PF00893 Small Multidrug Resistance protein llmg_0133 PF07690 Major Facilitator Superfamily llmg_0134 PF00535 Glycosyl transferase family 2 llmg_0138 PF00764 Arginosuccinate synthase llmg_0139 PF00206 Lyase llmg_0139 PF14698 Argininosuccinate lyase C-terminal llmg_0140 PF07690 Major Facilitator Superfamily llmg_0141 PF00440 Bacterial regulatory proteins, tetR family llmg_0141 PF13305 WHG domain llmg_0142 PF00825 Ribonuclease P llmg_0143 PF02096 60Kd inner membrane protein llmg_0144 PF01424 R3H domain llmg_0144 PF13083 KH domain llmg_0144 PF14804 Jag N-terminus llmg_0145 PF00468 Ribosomal protein L34 llmg_0146 PF00248 Aldo/keto reductase family llmg_0147 PF13560 Helix-turn-helix domain llmg_0149 PF02517 CAAX protease self-immunity llmg_0150 PF06135 llmg_0150 llmg_0151 PF03652 Uncharacterised protein family (UPF0081) llmg_0152 PF06949 llmg_0152 llmg_0153 PF06736 llmg_0153 llmg_0154 PF00106 short chain dehydrogenase llmg_0155 PF10078 llmg_0155 llmg_0156 PF00106 short chain dehydrogenase llmg_0157 PF00440 Bacterial regulatory proteins, tetR family llmg_0158 PF00128 Alpha amylase, catalytic domain llmg_0158 PF02806 Alpha amylase, C-terminal all-beta domain llmg_0158 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) llmg_0160 PF00881 Nitroreductase family llmg_0161 PF00440 Bacterial regulatory proteins, tetR family llmg_0162 PF05737 Collagen binding domain llmg_0164 PF01702 Queuine tRNA-ribosyltransferase llmg_0165 PF06161 llmg_0165 llmg_0167 PF13380 CoA binding domain llmg_0168 PF13930 DNA/RNA non-specific endonuclease llmg_0171 PF00155 Aminotransferase class I and II llmg_0172 PF06018 CodY GAF-like domain llmg_0172 PF08222 CodY helix-turn-helix domain llmg_0174 PF02686 Glu-tRNAGln amidotransferase C subunit llmg_0175 PF01425 Amidase llmg_0176 PF02637 GatB domain llmg_0176 PF02934 GatB/GatE catalytic domain llmg_0177 PF01425 Amidase llmg_0178 PF01554 MatE llmg_0180 PF00313 'Cold-shock' DNA-binding domain llmg_0181 PF01812 5-formyltetrahydrofolate cyclo-ligase family llmg_0182 PF01694 Rhomboid family llmg_0183 PF11687 llmg_0183 llmg_0184 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily llmg_0185 PF13527 Acetyltransferase (GNAT) domain llmg_0185 PF13530 Sterol carrier protein domain llmg_0186 PF05913 Bacterial protein of unknown function (DUF871) llmg_0187 PF02378 Phosphotransferase system, EIIC llmg_0190 PF00232 Glycosyl hydrolase family 1 llmg_0191 PF00692 dUTPase llmg_0192 PF00149 Calcineurin-like phosphoesterase llmg_0193 PF06265 Protein of unknown function (DUF1027) llmg_0194 PF04055 Radical SAM superfamily llmg_0194 PF13394 4Fe-4S single cluster domain llmg_0195 PF00881 Nitroreductase family llmg_0196 PF00348 Polyprenyl synthetase llmg_0197 PF01040 UbiA prenyltransferase family llmg_0198 PF02517 CAAX protease self-immunity llmg_0199 PF02421 Ferrous iron transport protein B llmg_0199 PF07664 llmg_0199 llmg_0199 PF07670 Nucleoside recognition llmg_0200 PF04023 FeoA domain llmg_0201 PF01641 SelR domain llmg_0202 PF02734 DAK2 domain llmg_0202 PF13684 Dihydroxyacetone kinase family llmg_0203 PF03780 llmg_0203 llmg_0204 PF00830 Ribosomal L28 family llmg_0205 PF06570 llmg_0205 llmg_0206 PF00483 Nucleotidyl transferase llmg_0207 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase llmg_0209 PF16363 llmg_0209 llmg_0210 PF04321 RmlD substrate binding domain llmg_0211 PF09314 llmg_0211 llmg_0212 PF00535 Glycosyl transferase family 2 llmg_0213 PF01061 llmg_0213 llmg_0214 PF00005 ABC transporter llmg_0215 PF09913 llmg_0215 llmg_0216 PF00535 Glycosyl transferase family 2 llmg_0217 PF05045 llmg_0217 llmg_0218 PF00535 Glycosyl transferase family 2 llmg_0219 PF10066 llmg_0219 llmg_0220 PF00535 Glycosyl transferase family 2 llmg_0221 PF00535 Glycosyl transferase family 2 llmg_0222 PF11380 llmg_0222 llmg_0224 PF03275 UDP-galactopyranose mutase llmg_0224 PF13450 NAD(P)-binding Rossmann-like domain llmg_0225 PF01943 llmg_0225 llmg_0225 PF14667 Polysaccharide biosynthesis C-terminal domain llmg_0227 PF09913 llmg_0227 llmg_0229 PF01183 Glycosyl hydrolases family 25 llmg_0230 PF00478 IMP dehydrogenase / GMP reductase domain llmg_0230 PF00571 CBS domain llmg_0231 PF01926 50S ribosome-binding GTPase llmg_0232 PF00293 NUDIX domain llmg_0233 PF01926 50S ribosome-binding GTPase llmg_0233 PF13167 llmg_0233 llmg_0233 PF16360 llmg_0233 llmg_0235 PF01985 CRS1 / YhbY (CRM) domain llmg_0236 PF01467 Cytidylyltransferase llmg_0237 PF01966 HD domain llmg_0238 PF13673 Acetyltransferase (GNAT) domain llmg_0239 PF02410 Oligomerisation domain llmg_0240 PF13649 Methyltransferase domain llmg_0241 PF05636 HIGH Nucleotidyl Transferase llmg_0242 PF01709 Transcriptional regulator llmg_0244 PF03167 Uracil DNA glycosylase superfamily llmg_0245 PF00107 Zinc-binding dehydrogenase llmg_0245 PF08240 Alcohol dehydrogenase GroES-like domain llmg_0246 PF13460 NADH(P)-binding llmg_0247 PF01370 NAD dependent epimerase/dehydratase family llmg_0248 PF00440 Bacterial regulatory proteins, tetR family llmg_0249 PF07690 Major Facilitator Superfamily llmg_0250 PF13411 MerR HTH family regulatory protein llmg_0251 PF01165 Ribosomal protein S21 llmg_0252 PF08282 haloacid dehalogenase-like hydrolase llmg_0253 PF00162 Phosphoglycerate kinase llmg_0254 PF13419 Haloacid dehalogenase-like hydrolase llmg_0255 PF02733 Dak1 domain llmg_0257 PF02734 DAK2 domain llmg_0258 PF03610 PTS system fructose IIA component llmg_0260 PF03577 llmg_0260 llmg_0262 PF01061 llmg_0262 llmg_0263 PF10672 S-adenosylmethionine-dependent methyltransferase llmg_0264 PF06874 llmg_0264 llmg_0265 PF03486 HI0933-like protein llmg_0266 PF01256 Carbohydrate kinase llmg_0267 PF07166 Protein of unknown function (DUF1398) llmg_0268 PF00005 ABC transporter llmg_0268 PF00664 ABC transporter transmembrane region llmg_0269 PF00005 ABC transporter llmg_0269 PF00664 ABC transporter transmembrane region llmg_0270 PF05128 llmg_0270 llmg_0271 PF01408 Oxidoreductase family, NAD-binding Rossmann fold llmg_0271 PF02894 Oxidoreductase family, C-terminal alpha/beta domain llmg_0273 PF02664 S-Ribosylhomocysteinase (LuxS) llmg_0276 PF00248 Aldo/keto reductase family llmg_0277 PF00857 Isochorismatase family llmg_0280 PF01476 LysM domain llmg_0280 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase llmg_0281 PF03477 ATP cone domain llmg_0281 PF13597 Anaerobic ribonucleoside-triphosphate reductase llmg_0282 PF13353 4Fe-4S single cluster domain llmg_0283 PF10087 llmg_0283 llmg_0287 PF00005 ABC transporter llmg_0288 PF00005 ABC transporter llmg_0289 PF02361 Cobalt transport protein llmg_0291 PF00132 Bacterial transferase hexapeptide (six repeats) llmg_0291 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal llmg_0291 PF14602 Hexapeptide repeat of succinyl-transferase llmg_0292 PF01546 Peptidase family M20/M25/M40 llmg_0292 PF07687 Peptidase dimerisation domain llmg_0293 PF01522 Polysaccharide deacetylase llmg_0295 PF14264 llmg_0295 llmg_0296 PF00163 Ribosomal protein S4/S9 N-terminal domain llmg_0296 PF01479 S4 domain llmg_0297 PF00575 S1 RNA binding domain llmg_0297 PF09371 Tex-like protein N-terminal domain llmg_0297 PF12836 Helix-hairpin-helix motif llmg_0297 PF16921 llmg_0297 llmg_0298 PF10263 llmg_0298 llmg_0298 PF17283 llmg_0298 llmg_0299 PF00962 Adenosine/AMP deaminase llmg_0300 PF13577 SnoaL-like domain llmg_0301 PF13411 MerR HTH family regulatory protein llmg_0302 PF00753 Metallo-beta-lactamase superfamily llmg_0302 PF07521 RNA-metabolising metallo-beta-lactamase llmg_0304 PF07288 Protein of unknown function (DUF1447) llmg_0306 PF00814 Glycoprotease family llmg_0307 PF00583 Acetyltransferase (GNAT) family llmg_0308 PF00583 Acetyltransferase (GNAT) family llmg_0309 PF00814 Glycoprotease family llmg_0310 PF15507 Domain of unknown function (DUF4649) llmg_0312 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein llmg_0313 PF00005 ABC transporter llmg_0314 PF00528 Binding-protein-dependent transport system inner membrane component llmg_0315 PF00528 Binding-protein-dependent transport system inner membrane component llmg_0316 PF00149 Calcineurin-like phosphoesterase llmg_0316 PF02872 5'-nucleotidase, C-terminal domain llmg_0318 PF08534 Redoxin llmg_0319 PF01433 Peptidase family M1 llmg_0319 PF11838 ERAP1-like C-terminal domain llmg_0320 PF07690 Major Facilitator Superfamily llmg_0321 PF01047 MarR family llmg_0322 PF01545 Cation efflux family llmg_0322 PF16916 llmg_0322 llmg_0323 PF03551 Transcriptional regulator PadR-like family llmg_0324 PF00005 ABC transporter llmg_0324 PF00664 ABC transporter transmembrane region llmg_0325 PF00005 ABC transporter llmg_0325 PF00664 ABC transporter transmembrane region llmg_0326 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) llmg_0327 PF02229 Transcriptional Coactivator p15 (PC4) llmg_0329 PF00005 ABC transporter llmg_0330 PF07690 Major Facilitator Superfamily llmg_0331 PF11877 llmg_0331 llmg_0332 PF02632 BioY family llmg_0333 PF04073 Aminoacyl-tRNA editing domain llmg_0334 PF09515 Thiamine transporter protein (Thia_YuaJ) llmg_0335 PF03180 NLPA lipoprotein llmg_0336 PF03180 NLPA lipoprotein llmg_0338 PF03180 NLPA lipoprotein llmg_0339 PF13561 Enoyl-(Acyl carrier protein) reductase llmg_0340 PF03180 NLPA lipoprotein llmg_0341 PF00005 ABC transporter llmg_0341 PF09383 NIL domain llmg_0342 PF00528 Binding-protein-dependent transport system inner membrane component llmg_0343 PF07155 ECF-type riboflavin transporter, S component llmg_0344 PF00005 ABC transporter llmg_0344 PF12558 llmg_0344 llmg_0345 PF02361 Cobalt transport protein llmg_0346 PF00005 ABC transporter llmg_0347 PF01032 FecCD transport family llmg_0348 PF01032 FecCD transport family llmg_0349 PF01497 Periplasmic binding protein llmg_0350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family llmg_0350 PF03466 LysR substrate binding domain llmg_0351 PF07690 Major Facilitator Superfamily llmg_0352 PF00248 Aldo/keto reductase family llmg_0353 PF01638 HxlR-like helix-turn-helix llmg_0354 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily llmg_0355 PF00300 Histidine phosphatase superfamily (branch 1) llmg_0356 PF00578 AhpC/TSA family llmg_0357 PF07992 Pyridine nucleotide-disulphide oxidoreductase llmg_0357 PF13192 Thioredoxin domain llmg_0358 PF00905 Penicillin binding protein transpeptidase domain llmg_0358 PF03717 Penicillin-binding Protein dimerisation domain llmg_0359 PF02132 RecR protein llmg_0359 PF13662 Toprim domain llmg_0360 PF01820 D-ala D-ala ligase N-terminus llmg_0360 PF07478 D-ala D-ala ligase C-terminus llmg_0361 PF01225 Mur ligase family, catalytic domain llmg_0361 PF02875 Mur ligase family, glutamate ligase domain llmg_0361 PF08245 Mur ligase middle domain llmg_0362 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle llmg_0364 PF00528 Binding-protein-dependent transport system inner membrane component llmg_0365 PF00528 Binding-protein-dependent transport system inner membrane component llmg_0365 PF12911 llmg_0365 llmg_0366 PF00005 ABC transporter llmg_0366 PF08352 Oligopeptide/dipeptide transporter, C-terminal region llmg_0367 PF00005 ABC transporter llmg_0367 PF08352 Oligopeptide/dipeptide transporter, C-terminal region llmg_0368 PF00009 Elongation factor Tu GTP binding domain llmg_0368 PF03144 Elongation factor Tu domain 2 llmg_0368 PF16658 llmg_0368 llmg_0369 PF00270 DEAD/DEAH box helicase llmg_0369 PF00271 Helicase conserved C-terminal domain llmg_0371 PF01926 50S ribosome-binding GTPase llmg_0371 PF07650 KH domain llmg_0372 PF00733 Asparagine synthase llmg_0372 PF13537 Glutamine amidotransferase domain llmg_0373 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain llmg_0373 PF06827 Zinc finger found in FPG and IleRS llmg_0373 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain llmg_0374 PF00154 recA bacterial DNA recombination protein llmg_0375 PF00324 Amino acid permease llmg_0376 PF00324 Amino acid permease llmg_0377 PF06133 Protein of unknown function (DUF964) llmg_0378 PF09902 llmg_0378 llmg_0380 PF01928 CYTH domain llmg_0381 PF05675 llmg_0381 llmg_0382 PF04607 Region found in RelA / SpoT proteins llmg_0383 PF01513 ATP-NAD kinase llmg_0384 PF00849 RNA pseudouridylate synthase llmg_0385 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD llmg_0386 PF00324 Amino acid permease llmg_0387 PF03358 NADPH-dependent FMN reductase llmg_0388 PF02424 ApbE family llmg_0389 PF00152 tRNA synthetases class II (D, K and N) llmg_0389 PF01336 OB-fold nucleic acid binding domain llmg_0390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family llmg_0390 PF03466 LysR substrate binding domain llmg_0391 PF03601 llmg_0391 llmg_0392 PF00056 lactate/malate dehydrogenase, NAD binding domain llmg_0392 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain llmg_0393 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family llmg_0393 PF03466 LysR substrate binding domain llmg_0394 PF03595 Voltage-dependent anion channel llmg_0395 PF02568 Thiamine biosynthesis protein (ThiI) llmg_0395 PF02926 THUMP domain llmg_0397 PF02525 Flavodoxin-like fold llmg_0398 PF02566 OsmC-like protein llmg_0399 PF00999 Sodium/hydrogen exchanger family llmg_0401 PF00579 tRNA synthetases class I (W and Y) llmg_0401 PF01479 S4 domain llmg_0402 PF00905 Penicillin binding protein transpeptidase domain llmg_0402 PF00912 Transglycosylase llmg_0403 PF05343 M42 glutamyl aminopeptidase llmg_0406 PF00085 Thioredoxin llmg_0407 PF01588 Putative tRNA binding domain llmg_0407 PF14794 Domain of unknown function (DUF4479) llmg_0408 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain llmg_0408 PF07992 Pyridine nucleotide-disulphide oxidoreductase llmg_0409 PF00436 Single-strand binding protein family llmg_0410 PF00166 Chaperonin 10 Kd subunit llmg_0411 PF00118 TCP-1/cpn60 chaperonin family llmg_0412 PF12706 Beta-lactamase superfamily domain llmg_0413 PF00512 His Kinase A (phospho-acceptor) domain llmg_0413 PF00989 PAS fold llmg_0413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase llmg_0414 PF00072 Response regulator receiver domain llmg_0414 PF00486 Transcriptional regulatory protein, C terminal llmg_0415 PF02223 Thymidylate kinase llmg_0416 PF13177 DNA polymerase III, delta subunit llmg_0417 PF04468 llmg_0417 llmg_0418 PF06156 llmg_0418 llmg_0419 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases llmg_0421 PF01061 llmg_0421 llmg_0422 PF13732 llmg_0422 llmg_0423 PF00005 ABC transporter llmg_0424 PF01047 MarR family llmg_0425 PF00288 GHMP kinases N terminal domain llmg_0425 PF08544 GHMP kinases C terminal llmg_0426 PF00288 GHMP kinases N terminal domain llmg_0426 PF08544 GHMP kinases C terminal llmg_0427 PF00288 GHMP kinases N terminal domain llmg_0427 PF08544 GHMP kinases C terminal llmg_0428 PF01070 FMN-dependent dehydrogenase llmg_0429 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain llmg_0429 PF02777 Iron/manganese superoxide dismutases, C-terminal domain llmg_0430 PF02554 llmg_0430 llmg_0430 PF13722 llmg_0430 llmg_0431 PF02525 Flavodoxin-like fold llmg_0432 PF08279 HTH domain llmg_0432 PF13280 llmg_0432 llmg_0433 PF00270 DEAD/DEAH box helicase llmg_0433 PF00271 Helicase conserved C-terminal domain llmg_0434 PF02698 DUF218 domain llmg_0435 PF01380 SIS domain llmg_0435 PF01418 Helix-turn-helix domain, rpiR family llmg_0437 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit llmg_0438 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit llmg_0439 PF01380 SIS domain llmg_0439 PF01418 Helix-turn-helix domain, rpiR family llmg_0440 PF02378 Phosphotransferase system, EIIC llmg_0441 PF00232 Glycosyl hydrolase family 1 llmg_0444 PF00533 BRCA1 C Terminus (BRCT) domain llmg_0444 PF01653 NAD-dependent DNA ligase adenylation domain llmg_0444 PF03119 NAD-dependent DNA ligase C4 zinc finger domain llmg_0444 PF03120 NAD-dependent DNA ligase OB-fold domain llmg_0444 PF12826 Helix-hairpin-helix motif llmg_0444 PF14520 Helix-hairpin-helix domain llmg_0445 PF00781 Diacylglycerol kinase catalytic domain llmg_0446 PF00005 ABC transporter llmg_0446 PF08402 TOBE domain llmg_0447 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase llmg_0447 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg llmg_0447 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain llmg_0447 PF10371 Domain of unknown function llmg_0447 PF12838 4Fe-4S dicluster domain llmg_0447 PF17147 llmg_0447 llmg_0448 PF02457 DisA bacterial checkpoint controller nucleotide-binding llmg_0450 PF07949 YbbR-like protein llmg_0451 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain llmg_0451 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I llmg_0451 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II llmg_0451 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III llmg_0452 PF00392 Bacterial regulatory proteins, gntR family llmg_0452 PF07702 UTRA domain llmg_0453 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 llmg_0454 PF00367 phosphotransferase system, EIIB llmg_0454 PF02378 Phosphotransferase system, EIIC llmg_0455 PF03632 Glycosyl hydrolase family 65 central catalytic domain llmg_0455 PF03633 Glycosyl hydrolase family 65, C-terminal domain llmg_0455 PF03636 Glycosyl hydrolase family 65, N-terminal domain llmg_0456 PF13419 Haloacid dehalogenase-like hydrolase llmg_0457 PF00326 Prolyl oligopeptidase family llmg_0459 PF02367 Uncharacterised P-loop hydrolase UPF0079 llmg_0460 PF00583 Acetyltransferase (GNAT) family llmg_0461 PF03816 Cell envelope-related transcriptional attenuator domain llmg_0462 PF01416 tRNA pseudouridine synthase llmg_0463 PF08543 Phosphomethylpyrimidine kinase llmg_0464 PF07155 ECF-type riboflavin transporter, S component llmg_0465 PF04260 Protein of unknown function (DUF436) llmg_0466 PF00266 Aminotransferase class-V llmg_0467 PF00117 Glutamine amidotransferase class-I llmg_0467 PF06418 CTP synthase N-terminus llmg_0474 PF14317 llmg_0474 llmg_0475 PF00056 lactate/malate dehydrogenase, NAD binding domain llmg_0475 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain llmg_0476 PF06210 llmg_0476 llmg_0477 PF11151 llmg_0477 llmg_0478 PF05014 Nucleoside 2-deoxyribosyltransferase llmg_0479 PF03641 Possible lysine decarboxylase llmg_0480 PF01712 Deoxynucleoside kinase llmg_0481 PF13529 Peptidase_C39 like family llmg_0482 PF13529 Peptidase_C39 like family llmg_0483 PF01336 OB-fold nucleic acid binding domain llmg_0483 PF02811 PHP domain llmg_0483 PF07733 Bacterial DNA polymerase III alpha subunit llmg_0483 PF14579 Helix-hairpin-helix motif llmg_0484 PF00356 Bacterial regulatory proteins, lacI family llmg_0484 PF13377 Periplasmic binding protein-like domain llmg_0485 PF06271 llmg_0485 llmg_0487 PF03632 Glycosyl hydrolase family 65 central catalytic domain llmg_0487 PF03633 Glycosyl hydrolase family 65, C-terminal domain llmg_0487 PF03636 Glycosyl hydrolase family 65, N-terminal domain llmg_0488 PF13416 Bacterial extracellular solute-binding protein llmg_0489 PF00528 Binding-protein-dependent transport system inner membrane component llmg_0490 PF00528 Binding-protein-dependent transport system inner membrane component llmg_0491 PF03006 llmg_0491 llmg_0492 PF02645 Uncharacterised protein, DegV family COG1307 llmg_0493 PF13472 GDSL-like Lipase/Acylhydrolase family llmg_0494 PF00933 Glycosyl hydrolase family 3 N terminal domain llmg_0495 PF09911 llmg_0495 llmg_0496 PF00216 Bacterial DNA-binding protein llmg_0497 PF00583 Acetyltransferase (GNAT) family llmg_0498 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain llmg_0499 PF02805 Metal binding domain of Ada llmg_0499 PF12833 Helix-turn-helix domain llmg_0500 PF00797 N-acetyltransferase llmg_0501 PF00005 ABC transporter llmg_0502 PF01061 llmg_0502 llmg_0503 PF04397 LytTr DNA-binding domain llmg_0504 PF11457 llmg_0504 llmg_0505 PF00266 Aminotransferase class-V llmg_0506 PF00877 NlpC/P60 family llmg_0506 PF01473 Putative cell wall binding repeat llmg_0507 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle llmg_0508 PF00291 Pyridoxal-phosphate dependent enzyme llmg_0509 PF01476 LysM domain llmg_0509 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase llmg_0510 PF00753 Metallo-beta-lactamase superfamily llmg_0511 PF00905 Penicillin binding protein transpeptidase domain llmg_0511 PF00912 Transglycosylase llmg_0512 PF03838 Recombination protein U llmg_0513 PF06908 Protein of unknown function (DUF1273) llmg_0514 PF03960 ArsC family llmg_0515 PF05256 Uncharacterised protein family (UPF0223) llmg_0516 PF00459 Inositol monophosphatase family llmg_0517 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) llmg_0518 PF11772 llmg_0518 llmg_0519 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase llmg_0519 PF05697 Bacterial trigger factor protein (TF) llmg_0519 PF05698 Bacterial trigger factor protein (TF) C-terminus llmg_0520 PF01807 CHC2 zinc finger llmg_0520 PF08275 DNA primase catalytic core, N-terminal domain llmg_0520 PF13155 Toprim-like llmg_0521 PF00140 Sigma-70 factor, region 1 llmg_0521 PF03979 Sigma-70 factor, region 1 llmg_0521 PF04539 Sigma-70 region 3 llmg_0521 PF04542 Sigma-70 region 2 llmg_0521 PF04545 Sigma-70, region 4 llmg_0521 PF04760 Translation initiation factor IF-2, N-terminal region llmg_0522 PF01380 SIS domain llmg_0522 PF01418 Helix-turn-helix domain, rpiR family llmg_0523 PF07690 Major Facilitator Superfamily llmg_0524 PF13240 llmg_0524 llmg_0526 PF13240 llmg_0526 llmg_0528 PF00004 ATPase family associated with various cellular activities (AAA) llmg_0528 PF02151 UvrB/uvrC motif llmg_0528 PF07724 AAA domain (Cdc48 subfamily) llmg_0528 PF10431 C-terminal, D2-small domain, of ClpB protein llmg_0529 PF02082 Transcriptional regulator llmg_0530 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain llmg_0530 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain llmg_0532 PF01327 Polypeptide deformylase llmg_0533 PF00293 NUDIX domain llmg_0534 PF00271 Helicase conserved C-terminal domain llmg_0534 PF02151 UvrB/uvrC motif llmg_0534 PF04851 Type III restriction enzyme, res subunit llmg_0534 PF12344 Ultra-violet resistance protein B llmg_0535 PF00497 Bacterial extracellular solute-binding proteins, family 3 llmg_0536 PF01546 Peptidase family M20/M25/M40 llmg_0536 PF07687 Peptidase dimerisation domain llmg_0538 PF07977 FabA-like domain llmg_0539 PF13561 Enoyl-(Acyl carrier protein) reductase llmg_0540 PF02096 60Kd inner membrane protein llmg_0541 PF03332 Eukaryotic phosphomannomutase llmg_0542 PF12822 Protein of unknown function (DUF3816) llmg_0543 PF02441 Flavoprotein llmg_0544 PF04127 DNA / pantothenate metabolism flavoprotein llmg_0546 PF01361 Tautomerase enzyme llmg_0547 PF00122 E1-E2 ATPase llmg_0547 PF00702 haloacid dehalogenase-like hydrolase llmg_0549 PF00665 Integrase core domain llmg_0549 PF13276 llmg_0549 llmg_0550 PF01527 Transposase llmg_0551 PF17294 llmg_0551 llmg_0553 PF03992 Antibiotic biosynthesis monooxygenase llmg_0554 PF00872 llmg_0554 llmg_0555 PF00265 Thymidine kinase llmg_0557 PF00472 RF-1 domain llmg_0557 PF03462 PCRF domain llmg_0559 PF00881 Nitroreductase family llmg_0560 PF05175 Methyltransferase small domain llmg_0561 PF00583 Acetyltransferase (GNAT) family llmg_0562 PF01300 Telomere recombination llmg_0563 PF00464 Serine hydroxymethyltransferase llmg_0564 PF13702 Lysozyme-like llmg_0565 PF00266 Aminotransferase class-V llmg_0566 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain llmg_0566 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain llmg_0567 PF12710 haloacid dehalogenase-like hydrolase llmg_0568 PF00708 Acylphosphatase llmg_0570 PF00588 SpoU rRNA Methylase family llmg_0570 PF08032 RNA 2'-O ribose methyltransferase substrate binding llmg_0572 PF13411 MerR HTH family regulatory protein llmg_0574 PF00258 Flavodoxin llmg_0576 PF00440 Bacterial regulatory proteins, tetR family llmg_0576 PF16859 llmg_0576 llmg_0577 PF00557 Metallopeptidase family M24 llmg_0578 PF03631 llmg_0578 llmg_0579 PF04138 llmg_0579 llmg_0581 PF11676 llmg_0581 llmg_0582 PF02603 HPr Serine kinase N terminus llmg_0582 PF07475 HPr Serine kinase C-terminal domain llmg_0583 PF01790 llmg_0583 llmg_0584 PF06103 llmg_0584 llmg_0585 PF12732 llmg_0585 llmg_0586 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain llmg_0586 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase llmg_0588 PF02705 llmg_0588 llmg_0589 PF11240 llmg_0589 llmg_0590 PF02588 llmg_0590 llmg_0591 PF01715 IPP transferase llmg_0593 PF01145 SPFH domain / Band 7 family llmg_0594 PF00589 Phage integrase family llmg_0594 PF13102 Phage integrase SAM-like domain llmg_0599 PF13231 llmg_0599 llmg_0600 PF00535 Glycosyl transferase family 2 llmg_0602 PF08000 Bacterial PH domain llmg_0603 PF06543 llmg_0603 llmg_0603 PF13443 Cro/C1-type HTH DNA-binding domain llmg_0604 PF00753 Metallo-beta-lactamase superfamily llmg_0604 PF12706 Beta-lactamase superfamily domain llmg_0605 PF00106 short chain dehydrogenase llmg_0606 PF01368 DHH family llmg_0606 PF02272 DHHA1 domain llmg_0606 PF10141 llmg_0606 llmg_0607 PF00156 Phosphoribosyl transferase domain llmg_0608 PF05066 HB1, ASXL, restriction endonuclease HTH domain llmg_0609 PF02618 YceG-like family llmg_0610 PF01272 Transcription elongation factor, GreA/GreB, C-term llmg_0610 PF03449 Transcription elongation factor, N-terminal llmg_0611 PF13518 Helix-turn-helix domain llmg_0612 PF01527 Transposase llmg_0613 PF00665 Integrase core domain llmg_0613 PF13276 llmg_0613 llmg_0614 PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) llmg_0615 PF00004 ATPase family associated with various cellular activities (AAA) llmg_0615 PF02861 Clp amino terminal domain llmg_0615 PF07724 AAA domain (Cdc48 subfamily) llmg_0615 PF10431 C-terminal, D2-small domain, of ClpB protein llmg_0616 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein llmg_0616 PF16321 llmg_0616 llmg_0617 PF00113 Enolase, C-terminal TIM barrel domain llmg_0617 PF03952 Enolase, N-terminal domain llmg_0618 PF00589 Phage integrase family llmg_0618 PF13495 Phage integrase, N-terminal SAM-like domain llmg_0621 PF00665 Integrase core domain llmg_0621 PF13276 llmg_0621 llmg_0622 PF01527 Transposase llmg_0623 PF16872 llmg_0623 llmg_0624 PF00005 ABC transporter llmg_0625 PF02687 llmg_0625 llmg_0627 PF00501 AMP-binding enzyme llmg_0628 PF01544 CorA-like Mg2+ transporter protein llmg_0629 PF01228 Glycine radical llmg_0629 PF02901 Pyruvate formate lyase llmg_0630 PF01121 Dephospho-CoA kinase llmg_0631 PF07690 Major Facilitator Superfamily llmg_0632 PF00471 Ribosomal protein L33 llmg_0633 PF01098 llmg_0633 llmg_0634 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain llmg_0634 PF00364 Biotin-requiring enzyme llmg_0634 PF00682 HMGL-like llmg_0634 PF02436 Conserved carboxylase domain llmg_0634 PF02785 Biotin carboxylase C-terminal domain llmg_0634 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain llmg_0635 PF00285 Citrate synthase llmg_0636 PF00330 Aconitase family (aconitate hydratase) llmg_0636 PF00694 Aconitase C-terminal domain llmg_0637 PF00180 Isocitrate/isopropylmalate dehydrogenase llmg_0638 PF00574 Clp protease llmg_0640 PF03960 ArsC family llmg_0643 PF00122 E1-E2 ATPase llmg_0643 PF00689 Cation transporting ATPase, C-terminus llmg_0643 PF00690 Cation transporter/ATPase, N-terminus llmg_0643 PF00702 haloacid dehalogenase-like hydrolase llmg_0644 PF01757 llmg_0644 llmg_0645 PF01757 llmg_0645 llmg_0646 PF13641 Glycosyltransferase like family 2 llmg_0647 PF00665 Integrase core domain llmg_0647 PF13276 llmg_0647 llmg_0648 PF01527 Transposase llmg_0649 PF01522 Polysaccharide deacetylase llmg_0650 PF05525 llmg_0650 llmg_0651 PF14542 GCN5-related N-acetyl-transferase llmg_0652 PF00665 Integrase core domain llmg_0652 PF13276 llmg_0652 llmg_0653 PF01527 Transposase llmg_0654 PF00665 Integrase core domain llmg_0655 PF01527 Transposase llmg_0656 PF13612 llmg_0656 llmg_0658 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) llmg_0658 PF04851 Type III restriction enzyme, res subunit llmg_0659 PF02384 N-6 DNA Methylase llmg_0659 PF12161 HsdM N-terminal domain llmg_0660 PF01420 Type I restriction modification DNA specificity domain llmg_0661 PF01544 CorA-like Mg2+ transporter protein llmg_0663 PF01470 Pyroglutamyl peptidase llmg_0664 PF01546 Peptidase family M20/M25/M40 llmg_0664 PF07687 Peptidase dimerisation domain llmg_0666 PF07690 Major Facilitator Superfamily llmg_0668 PF13673 Acetyltransferase (GNAT) domain llmg_0671 PF04369 llmg_0671 llmg_0674 PF13610 llmg_0674 llmg_0676 PF13673 Acetyltransferase (GNAT) domain llmg_0678 PF01527 Transposase llmg_0681 PF01381 Helix-turn-helix llmg_0682 PF00665 Integrase core domain llmg_0683 PF01695 IstB-like ATP binding protein llmg_0684 PF00665 Integrase core domain llmg_0684 PF13276 llmg_0684 llmg_0687 PF04369 llmg_0687 llmg_0690 PF00122 E1-E2 ATPase llmg_0690 PF00702 haloacid dehalogenase-like hydrolase llmg_0692 PF00403 Heavy-metal-associated domain llmg_0694 PF00027 Cyclic nucleotide-binding domain llmg_0694 PF13545 Crp-like helix-turn-helix domain llmg_0697 PF00005 ABC transporter llmg_0697 PF08352 Oligopeptide/dipeptide transporter, C-terminal region llmg_0698 PF00005 ABC transporter llmg_0698 PF08352 Oligopeptide/dipeptide transporter, C-terminal region llmg_0699 PF00528 Binding-protein-dependent transport system inner membrane component llmg_0700 PF00528 Binding-protein-dependent transport system inner membrane component llmg_0701 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle llmg_0702 PF01431 Peptidase family M13 llmg_0702 PF05649 Peptidase family M13 llmg_0703 PF01609 Transposase DDE domain llmg_0704 PF04369 llmg_0704 llmg_0705 PF08951 Enterocin A Immunity llmg_0706 PF08951 Enterocin A Immunity llmg_0708 PF09862 llmg_0708 llmg_0709 PF03551 Transcriptional regulator PadR-like family llmg_0711 PF00239 Resolvase, N terminal domain llmg_0711 PF02796 Helix-turn-helix domain of resolvase llmg_0714 PF00665 Integrase core domain llmg_0714 PF13276 llmg_0714 llmg_0717 PF13610 llmg_0717 llmg_0718 PF00899 ThiF family llmg_0719 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle llmg_0720 PF01527 Transposase llmg_0721 PF00665 Integrase core domain llmg_0721 PF13276 llmg_0721 llmg_0722 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) llmg_0722 PF02403 Seryl-tRNA synthetase N-terminal domain llmg_0724 PF06115 llmg_0724 llmg_0725 PF02588 llmg_0725 llmg_0726 PF06115 llmg_0726 llmg_0727 PF03613 llmg_0727 llmg_0728 PF03609 llmg_0728 llmg_0729 PF03610 PTS system fructose IIA component llmg_0729 PF03830 PTS system sorbose subfamily IIB component llmg_0730 PF13370 4Fe-4S single cluster domain llmg_0731 PF01476 LysM domain llmg_0732 PF02224 Cytidylate kinase llmg_0733 PF03816 Cell envelope-related transcriptional attenuator domain llmg_0734 PF00857 Isochorismatase family llmg_0736 PF02517 CAAX protease self-immunity llmg_0737 PF00528 Binding-protein-dependent transport system inner membrane component llmg_0738 PF00528 Binding-protein-dependent transport system inner membrane component llmg_0739 PF13416 Bacterial extracellular solute-binding protein llmg_0740 PF00128 Alpha amylase, catalytic domain llmg_0740 PF02903 Alpha amylase, N-terminal ig-like domain llmg_0741 PF00128 Alpha amylase, catalytic domain llmg_0741 PF16657 llmg_0741 llmg_0742 PF00132 Bacterial transferase hexapeptide (six repeats) llmg_0742 PF12464 Maltose acetyltransferase llmg_0743 PF00128 Alpha amylase, catalytic domain llmg_0744 PF00128 Alpha amylase, catalytic domain llmg_0745 PF03632 Glycosyl hydrolase family 65 central catalytic domain llmg_0745 PF03633 Glycosyl hydrolase family 65, C-terminal domain llmg_0745 PF03636 Glycosyl hydrolase family 65, N-terminal domain llmg_0746 PF00356 Bacterial regulatory proteins, lacI family llmg_0746 PF13377 Periplasmic binding protein-like domain llmg_0747 PF00072 Response regulator receiver domain llmg_0747 PF00486 Transcriptional regulatory protein, C terminal llmg_0748 PF00512 His Kinase A (phospho-acceptor) domain llmg_0748 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase llmg_0749 PF02779 Transketolase, pyrimidine binding domain llmg_0749 PF02780 Transketolase, C-terminal domain llmg_0749 PF13292 1-deoxy-D-xylulose-5-phosphate synthase llmg_0750 PF01809 llmg_0750 llmg_0751 PF00232 Glycosyl hydrolase family 1 llmg_0752 PF01061 llmg_0752 llmg_0752 PF12698 ABC-2 family transporter protein llmg_0753 PF01209 ubiE/COQ5 methyltransferase family llmg_0754 PF12844 Helix-turn-helix domain llmg_0755 PF08951 Enterocin A Immunity llmg_0758 PF00654 Voltage gated chloride channel llmg_0758 PF02080 TrkA-C domain llmg_0759 PF01040 UbiA prenyltransferase family llmg_0760 PF08230 llmg_0760 llmg_0761 PF01408 Oxidoreductase family, NAD-binding Rossmann fold llmg_0761 PF02894 Oxidoreductase family, C-terminal alpha/beta domain llmg_0762 PF00485 Phosphoribulokinase / Uridine kinase family llmg_0763 PF01515 Phosphate acetyl/butaryl transferase llmg_0765 PF08282 haloacid dehalogenase-like hydrolase llmg_0766 PF01580 FtsK/SpoIIIE family llmg_0766 PF09397 Ftsk gamma domain llmg_0768 PF06144 DNA polymerase III, delta subunit llmg_0769 PF05103 DivIVA protein llmg_0771 PF01170 Putative RNA methylase family UPF0020 llmg_0771 PF02926 THUMP domain llmg_0774 PF00557 Metallopeptidase family M24 llmg_0774 PF01321 Creatinase/Prolidase N-terminal domain llmg_0775 PF00356 Bacterial regulatory proteins, lacI family llmg_0775 PF13377 Periplasmic binding protein-like domain llmg_0776 PF07992 Pyridine nucleotide-disulphide oxidoreductase llmg_0777 PF02674 llmg_0777 llmg_0778 PF00488 MutS domain V llmg_0778 PF01713 Smr domain llmg_0779 PF00085 Thioredoxin llmg_0781 PF11184 llmg_0781 llmg_0782 PF01487 Type I 3-dehydroquinase llmg_0783 PF00206 Lyase llmg_0783 PF10397 Adenylosuccinate lyase C-terminus llmg_0784 PF00356 Bacterial regulatory proteins, lacI family llmg_0784 PF13377 Periplasmic binding protein-like domain llmg_0785 PF00294 pfkB family carbohydrate kinase llmg_0786 PF05025 RbsD / FucU transport protein family llmg_0787 PF00005 ABC transporter llmg_0788 PF02653 llmg_0788 llmg_0789 PF13407 Periplasmic binding protein domain llmg_0790 PF00589 Phage integrase family llmg_0791 PF12869 tRNA_anti-like llmg_0792 PF06114 Domain of unknown function (DUF955) llmg_0793 PF01381 Helix-turn-helix llmg_0794 PF09509 llmg_0794 llmg_0795 PF01381 Helix-turn-helix llmg_0797 PF08346 llmg_0797 llmg_0797 PF10552 llmg_0797 llmg_0798 PF12728 Helix-turn-helix domain llmg_0803 PF04761 llmg_0803 llmg_0804 PF07352 Bacteriophage Mu Gam like protein llmg_0805 PF13479 llmg_0805 llmg_0807 PF06926 llmg_0807 llmg_0807 PF14297 llmg_0807 llmg_0808 PF01695 IstB-like ATP binding protein llmg_0812 PF06275 llmg_0812 llmg_0814 PF06563 llmg_0814 llmg_0815 PF07852 llmg_0815 llmg_0816 PF00692 dUTPase llmg_0820 PF07874 llmg_0820 llmg_0821 PF05263 llmg_0821 llmg_0822 PF00665 Integrase core domain llmg_0823 PF01695 IstB-like ATP binding protein llmg_0824 PF03592 Terminase small subunit llmg_0825 PF03237 Terminase-like family llmg_0825 PF17289 llmg_0825 llmg_0826 PF05133 Phage portal protein, SPP1 Gp6-like llmg_0830 PF04327 Protein of unknown function (DUF464) llmg_0831 PF04233 llmg_0831 llmg_0834 PF13031 llmg_0834 llmg_0835 PF14265 llmg_0835 llmg_0836 PF02368 Bacterial Ig-like domain (group 2) llmg_0837 PF05135 Phage gp6-like head-tail connector protein llmg_0841 PF08813 llmg_0841 llmg_0846 PF07902 llmg_0846 llmg_0850 PF16938 llmg_0850 llmg_0851 PF01183 Glycosyl hydrolases family 25 llmg_0851 PF01476 LysM domain llmg_0852 PF07751 llmg_0852 llmg_0855 PF08951 Enterocin A Immunity llmg_0856 PF07690 Major Facilitator Superfamily llmg_0857 PF00392 Bacterial regulatory proteins, gntR family llmg_0857 PF07729 FCD domain llmg_0858 PF01232 Mannitol dehydrogenase Rossmann domain llmg_0858 PF08125 Mannitol dehydrogenase C-terminal domain llmg_0859 PF03786 D-mannonate dehydratase (UxuA) llmg_0860 PF13347 MFS/sugar transport protein llmg_0861 PF01263 Aldose 1-epimerase llmg_0862 PF02614 Glucuronate isomerase llmg_0864 PF01081 KDPG and KHG aldolase llmg_0865 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 llmg_0865 PF00874 PRD domain llmg_0865 PF08279 HTH domain llmg_0866 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit llmg_0867 PF03611 llmg_0867 llmg_0868 PF00456 Transketolase, thiamine diphosphate binding domain llmg_0868 PF02779 Transketolase, pyrimidine binding domain llmg_0868 PF02780 Transketolase, C-terminal domain llmg_0870 PF00230 Major intrinsic protein llmg_0871 PF01118 Semialdehyde dehydrogenase, NAD binding domain llmg_0871 PF02774 Semialdehyde dehydrogenase, dimerisation domain llmg_0872 PF00293 NUDIX domain llmg_0873 PF00293 NUDIX domain llmg_0874 PF00701 Dihydrodipicolinate synthetase family llmg_0875 PF02308 llmg_0875 llmg_0876 PF00753 Metallo-beta-lactamase superfamily llmg_0876 PF07521 RNA-metabolising metallo-beta-lactamase llmg_0877 PF13306 Leucine rich repeats (6 copies) llmg_0878 PF00448 SRP54-type protein, GTPase domain llmg_0878 PF02881 SRP54-type protein, helical bundle domain llmg_0878 PF02978 Signal peptide binding domain llmg_0879 PF13302 Acetyltransferase (GNAT) domain llmg_0880 PF03807 NADP oxidoreductase coenzyme F420-dependent llmg_0881 PF03591 llmg_0881 llmg_0882 PF05437 llmg_0882 llmg_0883 PF08984 Domain of unknown function (DUF1858) llmg_0884 PF01814 Hemerythrin HHE cation binding domain llmg_0884 PF04282 llmg_0884 llmg_0884 PF13596 PAS domain llmg_0885 PF00696 Amino acid kinase family llmg_0886 PF00171 Aldehyde dehydrogenase family llmg_0887 PF01545 Cation efflux family llmg_0888 PF01022 Bacterial regulatory protein, arsR family llmg_0889 PF13398 Peptidase M50B-like llmg_0890 PF00156 Phosphoribosyl transferase domain llmg_0891 PF00860 Permease family llmg_0893 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain llmg_0893 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain llmg_0894 PF00117 Glutamine amidotransferase class-I llmg_0894 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain llmg_0897 PF07553 Host cell surface-exposed lipoprotein llmg_0900 PF01527 Transposase llmg_0901 PF00665 Integrase core domain llmg_0901 PF13276 llmg_0901 llmg_0902 PF01451 Low molecular weight phosphotyrosine protein phosphatase llmg_0903 PF00149 Calcineurin-like phosphoesterase llmg_0904 PF05257 CHAP domain llmg_0905 PF03013 Pyrimidine dimer DNA glycosylase llmg_0906 PF01197 Ribosomal protein L31 llmg_0907 PF02620 llmg_0907 llmg_0908 PF00072 Response regulator receiver domain llmg_0908 PF00486 Transcriptional regulatory protein, C terminal llmg_0909 PF00512 His Kinase A (phospho-acceptor) domain llmg_0909 PF00672 HAMP domain llmg_0909 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase llmg_0910 PF00909 Ammonium Transporter Family llmg_0911 PF00543 Nitrogen regulatory protein P-II llmg_0912 PF02875 Mur ligase family, glutamate ligase domain llmg_0912 PF08245 Mur ligase middle domain llmg_0913 PF03033 Glycosyltransferase family 28 N-terminal domain llmg_0913 PF04101 Glycosyltransferase family 28 C-terminal domain llmg_0914 PF03799 Cell division protein FtsQ llmg_0914 PF08478 POTRA domain, FtsQ-type llmg_0915 PF01018 GTP1/OBG llmg_0915 PF01926 50S ribosome-binding GTPase llmg_0915 PF09269 Domain of unknown function (DUF1967) llmg_0920 PF13731 llmg_0920 llmg_0921 PF13731 llmg_0921 llmg_0922 PF13731 llmg_0922 llmg_0924 PF06030 llmg_0924 llmg_0924 PF11797 llmg_0924 llmg_0925 PF01381 Helix-turn-helix llmg_0926 PF02547 Queuosine biosynthesis protein llmg_0927 PF03959 Serine hydrolase (FSH1) llmg_0927 PF12146 Putative lysophospholipase llmg_0928 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase llmg_0929 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal llmg_0929 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal llmg_0930 PF00108 Thiolase, N-terminal domain llmg_0930 PF02803 Thiolase, C-terminal domain llmg_0931 PF00368 Hydroxymethylglutaryl-coenzyme A reductase llmg_0932 PF00886 Ribosomal protein S16 llmg_0933 PF13083 KH domain llmg_0934 PF00762 Ferrochelatase llmg_0935 PF12146 Putative lysophospholipase llmg_0936 PF01782 RimM N-terminal domain llmg_0936 PF05239 PRC-barrel domain llmg_0937 PF01746 tRNA (Guanine-1)-methyltransferase llmg_0938 PF06619 Protein of unknown function (DUF1149) llmg_0939 PF02645 Uncharacterised protein, DegV family COG1307 llmg_0940 PF01113 Dihydrodipicolinate reductase, N-terminus llmg_0940 PF05173 Dihydrodipicolinate reductase, C-terminus llmg_0941 PF13302 Acetyltransferase (GNAT) domain llmg_0942 PF01743 Poly A polymerase head domain llmg_0942 PF12627 Probable RNA and SrmB- binding site of polymerase A llmg_0942 PF13735 tRNA nucleotidyltransferase domain 2 putative llmg_0943 PF03577 llmg_0943 llmg_0945 PF00465 Iron-containing alcohol dehydrogenase llmg_0947 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family llmg_0948 PF00005 ABC transporter llmg_0948 PF12848 ABC transporter llmg_0948 PF16326 llmg_0948 llmg_0950 PF01408 Oxidoreductase family, NAD-binding Rossmann fold llmg_0951 PF01625 Peptide methionine sulfoxide reductase llmg_0952 PF01180 Dihydroorotate dehydrogenase llmg_0953 PF06541 llmg_0953 llmg_0954 PF08951 Enterocin A Immunity llmg_0955 PF00107 Zinc-binding dehydrogenase llmg_0955 PF08240 Alcohol dehydrogenase GroES-like domain llmg_0956 PF00356 Bacterial regulatory proteins, lacI family llmg_0956 PF13377 Periplasmic binding protein-like domain llmg_0957 PF00834 Ribulose-phosphate 3 epimerase family llmg_0958 PF02502 Ribose/Galactose Isomerase llmg_0959 PF00232 Glycosyl hydrolase family 1 llmg_0960 PF00232 Glycosyl hydrolase family 1 llmg_0961 PF00480 ROK family llmg_0962 PF12833 Helix-turn-helix domain llmg_0963 PF02378 Phosphotransferase system, EIIC llmg_0964 PF00303 Thymidylate synthase llmg_0966 PF12802 MarR family llmg_0967 PF07690 Major Facilitator Superfamily llmg_0968 PF00106 short chain dehydrogenase llmg_0969 PF10012 llmg_0969 llmg_0970 PF02627 Carboxymuconolactone decarboxylase family llmg_0971 PF03992 Antibiotic biosynthesis monooxygenase llmg_0972 PF07883 Cupin domain llmg_0973 PF01259 SAICAR synthetase llmg_0974 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase llmg_0975 PF13507 CobB/CobQ-like glutamine amidotransferase domain llmg_0976 PF00586 AIR synthase related protein, N-terminal domain llmg_0976 PF02769 AIR synthase related protein, C-terminal domain llmg_0977 PF00156 Phosphoribosyl transferase domain llmg_0977 PF13522 Glutamine amidotransferase domain llmg_0981 PF01527 Transposase llmg_0983 PF01527 Transposase llmg_0983 PF13518 Helix-turn-helix domain llmg_0986 PF00004 ATPase family associated with various cellular activities (AAA) llmg_0986 PF02861 Clp amino terminal domain llmg_0986 PF07724 AAA domain (Cdc48 subfamily) llmg_0986 PF10431 C-terminal, D2-small domain, of ClpB protein llmg_0987 PF00586 AIR synthase related protein, N-terminal domain llmg_0987 PF02769 AIR synthase related protein, C-terminal domain llmg_0988 PF00551 Formyl transferase llmg_0989 PF00005 ABC transporter llmg_0989 PF00664 ABC transporter transmembrane region llmg_0992 PF01370 NAD dependent epimerase/dehydratase family llmg_0993 PF00156 Phosphoribosyl transferase domain llmg_0994 PF01808 AICARFT/IMPCHase bienzyme llmg_0994 PF02142 MGS-like domain llmg_0995 PF13419 Haloacid dehalogenase-like hydrolase llmg_0996 PF00440 Bacterial regulatory proteins, tetR family llmg_0996 PF02909 Tetracyclin repressor, C-terminal all-alpha domain llmg_0997 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain llmg_0997 PF02843 Phosphoribosylglycinamide synthetase, C domain llmg_0997 PF02844 Phosphoribosylglycinamide synthetase, N domain llmg_0998 PF08282 haloacid dehalogenase-like hydrolase llmg_0999 PF00731 AIR carboxylase llmg_1000 PF02222 ATP-grasp domain llmg_1001 PF02311 AraC-like ligand binding domain llmg_1001 PF12833 Helix-turn-helix domain llmg_1003 PF13610 llmg_1003 llmg_1004 PF00232 Glycosyl hydrolase family 1 llmg_1005 PF00480 ROK family llmg_1006 PF00480 ROK family llmg_1008 PF00117 Glutamine amidotransferase class-I llmg_1008 PF00958 GMP synthase C terminal domain llmg_1008 PF02540 NAD synthase llmg_1009 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1010 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1011 PF13416 Bacterial extracellular solute-binding protein llmg_1014 PF03648 Glycosyl hydrolase family 67 N-terminus llmg_1014 PF15979 llmg_1014 llmg_1015 PF01554 MatE llmg_1016 PF01544 CorA-like Mg2+ transporter protein llmg_1017 PF01047 MarR family llmg_1019 PF00106 short chain dehydrogenase llmg_1020 PF13411 MerR HTH family regulatory protein llmg_1021 PF00892 EamA-like transporter family llmg_1023 PF01475 Ferric uptake regulator family llmg_1024 PF01988 llmg_1024 llmg_1025 PF01988 llmg_1025 llmg_1026 PF13649 Methyltransferase domain llmg_1027 PF01047 MarR family llmg_1028 PF00881 Nitroreductase family llmg_1029 PF06993 llmg_1029 llmg_1030 PF00425 chorismate binding enzyme llmg_1030 PF04715 Anthranilate synthase component I, N terminal region llmg_1031 PF00117 Glutamine amidotransferase class-I llmg_1032 PF00591 Glycosyl transferase family, a/b domain llmg_1032 PF02885 Glycosyl transferase family, helical bundle domain llmg_1037 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily llmg_1038 PF00218 Indole-3-glycerol phosphate synthase llmg_1039 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase llmg_1040 PF13302 Acetyltransferase (GNAT) domain llmg_1041 PF00291 Pyridoxal-phosphate dependent enzyme llmg_1042 PF00290 Tryptophan synthase alpha chain llmg_1045 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 llmg_1045 PF00367 phosphotransferase system, EIIB llmg_1045 PF02378 Phosphotransferase system, EIIC llmg_1046 PF00232 Glycosyl hydrolase family 1 llmg_1047 PF00392 Bacterial regulatory proteins, gntR family llmg_1047 PF02080 TrkA-C domain llmg_1048 PF00005 ABC transporter llmg_1048 PF00571 CBS domain llmg_1049 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1049 PF04069 Substrate binding domain of ABC-type glycine betaine transport system llmg_1050 PF11240 llmg_1050 llmg_1052 PF01507 Phosphoadenosine phosphosulfate reductase family llmg_1052 PF11922 llmg_1052 llmg_1053 PF11922 llmg_1053 llmg_1054 PF02195 ParB-like nuclease domain llmg_1056 PF01545 Cation efflux family llmg_1057 PF06146 llmg_1057 llmg_1058 PF00485 Phosphoribulokinase / Uridine kinase family llmg_1059 PF05175 Methyltransferase small domain llmg_1060 PF00591 Glycosyl transferase family, a/b domain llmg_1060 PF02885 Glycosyl transferase family, helical bundle domain llmg_1060 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain llmg_1062 PF01791 DeoC/LacD family aldolase llmg_1063 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region llmg_1064 PF02608 Basic membrane protein llmg_1065 PF00392 Bacterial regulatory proteins, gntR family llmg_1065 PF07702 UTRA domain llmg_1066 PF14340 llmg_1066 llmg_1067 PF00512 His Kinase A (phospho-acceptor) domain llmg_1067 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase llmg_1068 PF00072 Response regulator receiver domain llmg_1068 PF00486 Transcriptional regulatory protein, C terminal llmg_1069 PF04297 Putative helix-turn-helix protein, YlxM / p13 like llmg_1071 PF13518 Helix-turn-helix domain llmg_1072 PF01527 Transposase llmg_1073 PF00665 Integrase core domain llmg_1073 PF13276 llmg_1073 llmg_1074 PF01695 IstB-like ATP binding protein llmg_1075 PF00665 Integrase core domain llmg_1076 PF13302 Acetyltransferase (GNAT) domain llmg_1077 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily llmg_1079 PF06486 Protein of unknown function (DUF1093) llmg_1080 PF00582 Universal stress protein family llmg_1081 PF06993 llmg_1081 llmg_1082 PF05857 llmg_1082 llmg_1083 PF06736 llmg_1083 llmg_1085 PF02677 llmg_1085 llmg_1086 PF00122 E1-E2 ATPase llmg_1086 PF00689 Cation transporting ATPase, C-terminus llmg_1086 PF00690 Cation transporter/ATPase, N-terminus llmg_1086 PF00702 haloacid dehalogenase-like hydrolase llmg_1087 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase llmg_1088 PF00255 Glutathione peroxidase llmg_1089 PF02142 MGS-like domain llmg_1089 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain llmg_1089 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain llmg_1093 PF06030 llmg_1093 llmg_1093 PF11797 llmg_1093 llmg_1095 PF13731 llmg_1095 llmg_1096 PF06030 llmg_1096 llmg_1096 PF11797 llmg_1096 llmg_1097 PF00230 Major intrinsic protein llmg_1098 PF01266 FAD dependent oxidoreductase llmg_1098 PF16901 llmg_1098 llmg_1099 PF00370 FGGY family of carbohydrate kinases, N-terminal domain llmg_1099 PF02782 FGGY family of carbohydrate kinases, C-terminal domain llmg_1100 PF00849 RNA pseudouridylate synthase llmg_1101 PF04536 TLP18 llmg_1103 PF13421 llmg_1103 llmg_1104 PF07690 Major Facilitator Superfamily llmg_1105 PF00175 Oxidoreductase NAD-binding domain llmg_1105 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B llmg_1106 PF01180 Dihydroorotate dehydrogenase llmg_1107 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family llmg_1109 PF02527 rRNA small subunit methyltransferase G llmg_1110 PF00348 Polyprenyl synthetase llmg_1111 PF07456 llmg_1111 llmg_1112 PF07009 Protein of unknown function (DUF1312) llmg_1113 PF00483 Nucleotidyl transferase llmg_1114 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus llmg_1114 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus llmg_1115 PF10112 llmg_1115 llmg_1116 PF05816 llmg_1116 llmg_1117 PF01979 Amidohydrolase family llmg_1118 PF00365 Phosphofructokinase llmg_1119 PF00224 Pyruvate kinase, barrel domain llmg_1119 PF02887 Pyruvate kinase, alpha/beta domain llmg_1120 PF00056 lactate/malate dehydrogenase, NAD binding domain llmg_1120 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain llmg_1121 PF02653 llmg_1121 llmg_1122 PF02653 llmg_1122 llmg_1123 PF00005 ABC transporter llmg_1124 PF13649 Methyltransferase domain llmg_1125 PF05670 llmg_1125 llmg_1125 PF05833 Fibronectin-binding protein A N-terminus (FbpA) llmg_1127 PF06488 llmg_1127 llmg_1130 PF03960 ArsC family llmg_1131 PF02558 Ketopantoate reductase PanE/ApbA llmg_1131 PF08546 Ketopantoate reductase PanE/ApbA C terminal llmg_1132 PF00149 Calcineurin-like phosphoesterase llmg_1133 PF13476 AAA domain llmg_1133 PF13558 Putative exonuclease SbcCD, C subunit llmg_1134 PF13780 llmg_1134 llmg_1136 PF00005 ABC transporter llmg_1137 PF00950 llmg_1137 llmg_1138 PF01297 Periplasmic solute binding protein family llmg_1142 PF00872 llmg_1142 llmg_1143 PF01381 Helix-turn-helix llmg_1144 PF00665 Integrase core domain llmg_1144 PF13276 llmg_1144 llmg_1145 PF01527 Transposase llmg_1149 PF02423 Ornithine cyclodeaminase/mu-crystallin family llmg_1150 PF02567 Phenazine biosynthesis-like protein llmg_1151 PF00155 Aminotransferase class I and II llmg_1151 PF00392 Bacterial regulatory proteins, gntR family llmg_1152 PF00746 llmg_1152 llmg_1152 PF06458 MucBP domain llmg_1152 PF07523 Bacterial Ig-like domain (group 3) llmg_1153 PF00117 Glutamine amidotransferase class-I llmg_1154 PF00425 chorismate binding enzyme llmg_1154 PF01063 Aminotransferase class IV llmg_1155 PF03960 ArsC family llmg_1156 PF06953 Arsenical resistance operon trans-acting repressor ArsD llmg_1158 PF08020 Protein of unknown function (DUF1706) llmg_1159 PF08020 Protein of unknown function (DUF1706) llmg_1160 PF13020 llmg_1160 llmg_1162 PF03629 Domain of unknown function (DUF303) llmg_1163 PF01547 Bacterial extracellular solute-binding protein llmg_1164 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1165 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1166 PF01270 Glycosyl hydrolases family 8 llmg_1168 PF01522 Polysaccharide deacetylase llmg_1169 PF07477 Glycosyl hydrolase family 67 C-terminus llmg_1169 PF07488 Glycosyl hydrolase family 67 middle domain llmg_1170 PF00149 Calcineurin-like phosphoesterase llmg_1171 PF00557 Metallopeptidase family M24 llmg_1171 PF01321 Creatinase/Prolidase N-terminal domain llmg_1172 PF00455 llmg_1172 llmg_1172 PF08220 DeoR-like helix-turn-helix domain llmg_1174 PF13508 Acetyltransferase (GNAT) domain llmg_1175 PF01926 50S ribosome-binding GTPase llmg_1176 PF01351 Ribonuclease HII llmg_1178 PF13520 Amino acid permease llmg_1179 PF00282 Pyridoxal-dependent decarboxylase conserved domain llmg_1180 PF00924 Mechanosensitive ion channel llmg_1181 PF01063 Aminotransferase class IV llmg_1182 PF00132 Bacterial transferase hexapeptide (six repeats) llmg_1182 PF12464 Maltose acetyltransferase llmg_1182 PF14602 Hexapeptide repeat of succinyl-transferase llmg_1183 PF00310 Glutamine amidotransferases class-II llmg_1183 PF01493 GXGXG motif llmg_1183 PF01645 Conserved region in glutamate synthase llmg_1183 PF04898 Glutamate synthase central domain llmg_1184 PF07992 Pyridine nucleotide-disulphide oxidoreductase llmg_1184 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster llmg_1185 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain llmg_1185 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain llmg_1186 PF03672 llmg_1186 llmg_1187 PF01177 Asp/Glu/Hydantoin racemase llmg_1188 PF01725 Ham1 family llmg_1189 PF12850 Calcineurin-like phosphoesterase superfamily domain llmg_1190 PF00571 CBS domain llmg_1192 PF02616 ScpA/B protein llmg_1193 PF04079 Putative transcriptional regulators (Ypuh-like) llmg_1194 PF00849 RNA pseudouridylate synthase llmg_1194 PF01479 S4 domain llmg_1195 PF12822 Protein of unknown function (DUF3816) llmg_1200 PF13365 Trypsin-like peptidase domain llmg_1202 PF00005 ABC transporter llmg_1202 PF00664 ABC transporter transmembrane region llmg_1203 PF00005 ABC transporter llmg_1203 PF00664 ABC transporter transmembrane region llmg_1204 PF00717 Peptidase S24-like llmg_1204 PF01381 Helix-turn-helix llmg_1207 PF00466 Ribosomal protein L10 llmg_1208 PF00542 Ribosomal protein L7/L12 C-terminal domain llmg_1208 PF16320 llmg_1208 llmg_1209 PF01047 MarR family llmg_1210 PF07690 Major Facilitator Superfamily llmg_1211 PF16069 llmg_1211 llmg_1215 PF13641 Glycosyltransferase like family 2 llmg_1216 PF02110 Hydroxyethylthiazole kinase family llmg_1217 PF08543 Phosphomethylpyrimidine kinase llmg_1218 PF02581 Thiamine monophosphate synthase/TENI llmg_1219 PF00501 AMP-binding enzyme llmg_1220 PF03062 llmg_1220 llmg_1221 PF00550 Phosphopantetheine attachment site llmg_1222 PF04914 DltD C-terminal region llmg_1223 PF00122 E1-E2 ATPase llmg_1223 PF00690 Cation transporter/ATPase, N-terminus llmg_1223 PF00702 haloacid dehalogenase-like hydrolase llmg_1224 PF01325 Iron dependent repressor, N-terminal DNA binding domain llmg_1224 PF02742 Iron dependent repressor, metal binding and dimerisation domain llmg_1225 PF01717 Cobalamin-independent synthase, Catalytic domain llmg_1225 PF08267 Cobalamin-independent synthase, N-terminal domain llmg_1226 PF02219 Methylenetetrahydrofolate reductase llmg_1227 PF00793 DAHP synthetase I family llmg_1231 PF01527 Transposase llmg_1231 PF13518 Helix-turn-helix domain llmg_1232 PF01527 Transposase llmg_1233 PF00665 Integrase core domain llmg_1233 PF13276 llmg_1233 llmg_1234 PF01527 Transposase llmg_1235 PF00027 Cyclic nucleotide-binding domain llmg_1237 PF01262 Alanine dehydrogenase/PNT, C-terminal domain llmg_1237 PF05222 Alanine dehydrogenase/PNT, N-terminal domain llmg_1238 PF00313 'Cold-shock' DNA-binding domain llmg_1240 PF01380 SIS domain llmg_1241 PF00480 ROK family llmg_1243 PF00759 Glycosyl hydrolase family 9 llmg_1243 PF02927 N-terminal ig-like domain of cellulase llmg_1244 PF02378 Phosphotransferase system, EIIC llmg_1245 PF08282 haloacid dehalogenase-like hydrolase llmg_1246 PF01022 Bacterial regulatory protein, arsR family llmg_1247 PF06953 Arsenical resistance operon trans-acting repressor ArsD llmg_1248 PF02374 Anion-transporting ATPase llmg_1249 PF00581 Rhodanese-like domain llmg_1249 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain llmg_1249 PF07992 Pyridine nucleotide-disulphide oxidoreductase llmg_1250 PF01758 Sodium Bile acid symporter family llmg_1252 PF13411 MerR HTH family regulatory protein llmg_1253 PF00248 Aldo/keto reductase family llmg_1255 PF00313 'Cold-shock' DNA-binding domain llmg_1256 PF00313 'Cold-shock' DNA-binding domain llmg_1257 PF04226 llmg_1257 llmg_1259 PF10031 llmg_1259 llmg_1260 PF03780 llmg_1260 llmg_1261 PF01695 IstB-like ATP binding protein llmg_1262 PF00665 Integrase core domain llmg_1263 PF03780 llmg_1263 llmg_1264 PF01527 Transposase llmg_1265 PF00665 Integrase core domain llmg_1265 PF13276 llmg_1265 llmg_1267 PF01544 CorA-like Mg2+ transporter protein llmg_1268 PF00589 Phage integrase family llmg_1270 PF00589 Phage integrase family llmg_1270 PF13495 Phage integrase, N-terminal SAM-like domain llmg_1271 PF01134 Glucose inhibited division protein A llmg_1272 PF01131 DNA topoisomerase llmg_1272 PF01396 llmg_1272 llmg_1272 PF01751 Toprim domain llmg_1273 PF02481 DNA recombination-mediator protein A llmg_1274 PF01042 Endoribonuclease L-PSP llmg_1275 PF03306 Alpha-acetolactate decarboxylase llmg_1276 PF00291 Pyridoxal-phosphate dependent enzyme llmg_1276 PF00585 C-terminal regulatory domain of Threonine dehydratase llmg_1277 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain llmg_1277 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain llmg_1278 PF01842 ACT domain llmg_1278 PF10369 Small subunit of acetolactate synthase llmg_1279 PF00205 Thiamine pyrophosphate enzyme, central domain llmg_1279 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain llmg_1279 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain llmg_1280 PF00920 Dehydratase family llmg_1281 PF00005 ABC transporter llmg_1282 PF00694 Aconitase C-terminal domain llmg_1284 PF00330 Aconitase family (aconitate hydratase) llmg_1287 PF00581 Rhodanese-like domain llmg_1287 PF12368 llmg_1287 llmg_1288 PF02811 PHP domain llmg_1289 PF01502 Phosphoribosyl-AMP cyclohydrolase llmg_1289 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase llmg_1290 PF00977 Histidine biosynthesis protein llmg_1291 PF00977 Histidine biosynthesis protein llmg_1292 PF00117 Glutamine amidotransferase class-I llmg_1293 PF01636 Phosphotransferase enzyme family llmg_1294 PF00475 Imidazoleglycerol-phosphate dehydratase llmg_1295 PF00815 Histidinol dehydrogenase llmg_1296 PF01634 ATP phosphoribosyltransferase llmg_1297 PF13393 Histidyl-tRNA synthetase llmg_1298 PF00155 Aminotransferase class I and II llmg_1299 PF06966 llmg_1299 llmg_1301 PF02645 Uncharacterised protein, DegV family COG1307 llmg_1301 PF02734 DAK2 domain llmg_1302 PF09945 llmg_1302 llmg_1303 PF03073 TspO/MBR family llmg_1304 PF00575 S1 RNA binding domain llmg_1304 PF00773 RNB domain llmg_1304 PF08206 Ribonuclease B OB domain llmg_1305 PF12844 Helix-turn-helix domain llmg_1306 PF05738 Cna protein B-type domain llmg_1309 PF00205 Thiamine pyrophosphate enzyme, central domain llmg_1309 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain llmg_1309 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain llmg_1310 PF13176 Tetratricopeptide repeat llmg_1310 PF13424 Tetratricopeptide repeat llmg_1310 PF13432 Tetratricopeptide repeat llmg_1311 PF01594 llmg_1311 llmg_1313 PF13847 Methyltransferase domain llmg_1315 PF05958 tRNA (Uracil-5-)-methyltransferase llmg_1316 PF01380 SIS domain llmg_1316 PF01418 Helix-turn-helix domain, rpiR family llmg_1317 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase llmg_1318 PF00122 E1-E2 ATPase llmg_1318 PF00702 haloacid dehalogenase-like hydrolase llmg_1319 PF00872 llmg_1319 llmg_1320 PF04616 Glycosyl hydrolases family 43 llmg_1321 PF00150 Cellulase (glycosyl hydrolase family 5) llmg_1322 PF07690 Major Facilitator Superfamily llmg_1323 PF00872 llmg_1323 llmg_1324 PF12833 Helix-turn-helix domain llmg_1325 PF13416 Bacterial extracellular solute-binding protein llmg_1326 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1327 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1328 PF00005 ABC transporter llmg_1328 PF08402 TOBE domain llmg_1329 PF01565 FAD binding domain llmg_1329 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain llmg_1331 PF00288 GHMP kinases N terminal domain llmg_1331 PF08544 GHMP kinases C terminal llmg_1332 PF00742 Homoserine dehydrogenase llmg_1332 PF03447 Homoserine dehydrogenase, NAD binding domain llmg_1333 PF01712 Deoxynucleoside kinase llmg_1334 PF02875 Mur ligase family, glutamate ligase domain llmg_1334 PF08245 Mur ligase middle domain llmg_1335 PF00293 NUDIX domain llmg_1336 PF00809 Pterin binding enzyme llmg_1337 PF01227 GTP cyclohydrolase I llmg_1337 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) llmg_1338 PF02152 Dihydroneopterin aldolase llmg_1339 PF01926 50S ribosome-binding GTPase llmg_1340 PF06689 ClpX C4-type zinc finger llmg_1340 PF07724 AAA domain (Cdc48 subfamily) llmg_1340 PF10431 C-terminal, D2-small domain, of ClpB protein llmg_1342 PF00186 Dihydrofolate reductase llmg_1343 PF00588 SpoU rRNA Methylase family llmg_1345 PF00860 Permease family llmg_1346 PF00156 Phosphoribosyl transferase domain llmg_1347 PF01381 Helix-turn-helix llmg_1348 PF05973 llmg_1348 llmg_1349 PF04332 llmg_1349 llmg_1350 PF02342 TerD domain llmg_1351 PF02342 TerD domain llmg_1352 PF02342 TerD domain llmg_1353 PF05816 llmg_1353 llmg_1354 PF14266 llmg_1354 llmg_1356 PF11202 llmg_1356 llmg_1356 PF15608 llmg_1356 llmg_1357 PF12500 llmg_1357 llmg_1357 PF15609 llmg_1357 llmg_1358 PF15617 llmg_1358 llmg_1359 PF01381 Helix-turn-helix llmg_1360 PF05973 llmg_1360 llmg_1361 PF00589 Phage integrase family llmg_1367 PF00665 Integrase core domain llmg_1367 PF13276 llmg_1367 llmg_1368 PF01527 Transposase llmg_1371 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) llmg_1371 PF01348 llmg_1371 llmg_1373 PF05713 llmg_1373 llmg_1374 PF01396 llmg_1374 llmg_1379 PF13154 llmg_1379 llmg_1379 PF13155 Toprim-like llmg_1383 PF02534 Type IV secretory system Conjugative DNA transfer llmg_1390 PF05257 CHAP domain llmg_1391 PF01935 Domain of unknown function DUF87 llmg_1400 PF00226 DnaJ domain llmg_1409 PF13614 AAA domain llmg_1412 PF00478 IMP dehydrogenase / GMP reductase domain llmg_1413 PF07314 llmg_1413 llmg_1414 PF13242 HAD-hyrolase-like llmg_1414 PF13344 Haloacid dehalogenase-like hydrolase llmg_1415 PF01643 Acyl-ACP thioesterase llmg_1416 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region llmg_1417 PF01183 Glycosyl hydrolases family 25 llmg_1418 PF04055 Radical SAM superfamily llmg_1418 PF06969 HemN C-terminal domain llmg_1419 PF02195 ParB-like nuclease domain llmg_1420 PF01507 Phosphoadenosine phosphosulfate reductase family llmg_1420 PF11922 llmg_1420 llmg_1422 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family llmg_1424 PF00121 Triosephosphate isomerase llmg_1425 PF01380 SIS domain llmg_1425 PF01418 Helix-turn-helix domain, rpiR family llmg_1426 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 llmg_1426 PF00367 phosphotransferase system, EIIB llmg_1426 PF02378 Phosphotransferase system, EIIC llmg_1427 PF13580 SIS domain llmg_1428 PF05913 Bacterial protein of unknown function (DUF871) llmg_1429 PF00056 lactate/malate dehydrogenase, NAD binding domain llmg_1429 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain llmg_1430 PF01687 Riboflavin kinase llmg_1430 PF06574 FAD synthetase llmg_1431 PF01509 TruB family pseudouridylate synthase (N terminal domain) llmg_1431 PF16198 llmg_1431 llmg_1434 PF13731 llmg_1434 llmg_1435 PF06030 llmg_1435 llmg_1437 PF00665 Integrase core domain llmg_1437 PF13276 llmg_1437 llmg_1438 PF01527 Transposase llmg_1440 PF01636 Phosphotransferase enzyme family llmg_1441 PF00890 FAD binding domain llmg_1442 PF06983 3-demethylubiquinone-9 3-methyltransferase llmg_1444 PF00293 NUDIX domain llmg_1445 PF00580 UvrD/REP helicase N-terminal domain llmg_1445 PF13361 UvrD-like helicase C-terminal domain llmg_1447 PF06197 llmg_1447 llmg_1448 PF01336 OB-fold nucleic acid binding domain llmg_1448 PF09924 Uncharacterized conserved protein (DUF2156) llmg_1448 PF16995 llmg_1448 llmg_1449 PF04203 Sortase family llmg_1450 PF02424 ApbE family llmg_1451 PF00521 DNA gyrase/topoisomerase IV, subunit A llmg_1451 PF03989 DNA gyrase C-terminal domain, beta-propeller llmg_1452 PF13520 Amino acid permease llmg_1453 PF13460 NADH(P)-binding llmg_1454 PF00480 ROK family llmg_1455 PF00232 Glycosyl hydrolase family 1 llmg_1456 PF00933 Glycosyl hydrolase family 3 N terminal domain llmg_1456 PF01915 Glycosyl hydrolase family 3 C-terminal domain llmg_1456 PF14310 Fibronectin type III-like domain llmg_1457 PF00005 ABC transporter llmg_1457 PF08352 Oligopeptide/dipeptide transporter, C-terminal region llmg_1458 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1458 PF12911 llmg_1458 llmg_1459 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1460 PF00005 ABC transporter llmg_1460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region llmg_1461 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle llmg_1462 PF01380 SIS domain llmg_1462 PF01418 Helix-turn-helix domain, rpiR family llmg_1463 PF00009 Elongation factor Tu GTP binding domain llmg_1463 PF00679 Elongation factor G C-terminus llmg_1463 PF03144 Elongation factor Tu domain 2 llmg_1463 PF06421 GTP-binding protein LepA C-terminus llmg_1463 PF14492 Elongation Factor G, domain II llmg_1464 PF03306 Alpha-acetolactate decarboxylase llmg_1465 PF08245 Mur ligase middle domain llmg_1465 PF08353 llmg_1465 llmg_1466 PF07685 CobB/CobQ-like glutamine amidotransferase domain llmg_1467 PF02687 llmg_1467 llmg_1467 PF12704 MacB-like periplasmic core domain llmg_1468 PF00005 ABC transporter llmg_1470 PF02540 NAD synthase llmg_1471 PF00583 Acetyltransferase (GNAT) family llmg_1472 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family llmg_1473 PF01467 Cytidylyltransferase llmg_1474 PF00654 Voltage gated chloride channel llmg_1475 PF05979 Bacterial protein of unknown function (DUF896) llmg_1477 PF02092 llmg_1477 llmg_1478 PF02091 Glycyl-tRNA synthetase alpha subunit llmg_1480 PF04332 llmg_1480 llmg_1481 PF04892 llmg_1481 llmg_1482 PF01205 Uncharacterized protein family UPF0029 llmg_1482 PF09186 Domain of unknown function (DUF1949) llmg_1483 PF00271 Helicase conserved C-terminal domain llmg_1483 PF04851 Type III restriction enzyme, res subunit llmg_1485 PF06042 Bacterial protein of unknown function (DUF925) llmg_1486 PF01219 Prokaryotic diacylglycerol kinase llmg_1487 PF02130 Uncharacterized protein family UPF0054 llmg_1488 PF00293 NUDIX domain llmg_1489 PF02562 PhoH-like protein llmg_1490 PF01566 llmg_1490 llmg_1491 PF01016 Ribosomal L27 protein llmg_1492 PF04327 Protein of unknown function (DUF464) llmg_1493 PF00829 Ribosomal prokaryotic L21 protein llmg_1494 PF06197 llmg_1494 llmg_1495 PF09148 Domain of unknown function (DUF1934) llmg_1496 PF01966 HD domain llmg_1497 PF08282 haloacid dehalogenase-like hydrolase llmg_1498 PF01521 Iron-sulphur cluster biosynthesis llmg_1499 PF01784 NIF3 (NGG1p interacting factor 3) llmg_1500 PF04816 Family of unknown function (DUF633) llmg_1501 PF00633 Helix-hairpin-helix motif llmg_1501 PF00730 HhH-GPD superfamily base excision DNA repair protein llmg_1501 PF10576 Iron-sulfur binding domain of endonuclease III llmg_1502 PF07261 Replication initiation and membrane attachment llmg_1503 PF03382 llmg_1503 llmg_1506 PF07523 Bacterial Ig-like domain (group 3) llmg_1507 PF08238 Sel1 repeat llmg_1507 PF13936 Helix-turn-helix domain llmg_1508 PF01979 Amidohydrolase family llmg_1509 PF00156 Phosphoribosyl transferase domain llmg_1512 PF00005 ABC transporter llmg_1512 PF12848 ABC transporter llmg_1513 PF00462 Glutaredoxin llmg_1513 PF03960 ArsC family llmg_1514 PF02629 CoA binding domain llmg_1514 PF06971 Putative DNA-binding protein N-terminus llmg_1515 PF04002 RadC-like JAB domain llmg_1515 PF12826 Helix-hairpin-helix motif llmg_1516 PF01380 SIS domain llmg_1516 PF13522 Glutamine amidotransferase domain llmg_1517 PF01569 PAP2 superfamily llmg_1518 PF00512 His Kinase A (phospho-acceptor) domain llmg_1518 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase llmg_1519 PF09900 llmg_1519 llmg_1520 PF00072 Response regulator receiver domain llmg_1520 PF00486 Transcriptional regulatory protein, C terminal llmg_1521 PF00535 Glycosyl transferase family 2 llmg_1522 PF13231 llmg_1522 llmg_1523 PF02681 llmg_1523 llmg_1524 PF00849 RNA pseudouridylate synthase llmg_1524 PF01479 S4 domain llmg_1525 PF01252 llmg_1525 llmg_1527 PF08279 HTH domain llmg_1529 PF00885 6,7-dimethyl-8-ribityllumazine synthase llmg_1530 PF00925 GTP cyclohydrolase II llmg_1530 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase llmg_1531 PF00677 Lumazine binding domain llmg_1532 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region llmg_1532 PF01872 RibD C-terminal domain llmg_1533 PF01544 CorA-like Mg2+ transporter protein llmg_1534 PF00521 DNA gyrase/topoisomerase IV, subunit A llmg_1534 PF03989 DNA gyrase C-terminal domain, beta-propeller llmg_1536 PF13673 Acetyltransferase (GNAT) domain llmg_1537 PF00929 Exonuclease llmg_1538 PF00857 Isochorismatase family llmg_1539 PF00204 DNA gyrase B llmg_1539 PF00986 DNA gyrase B subunit, carboxyl terminus llmg_1539 PF01751 Toprim domain llmg_1539 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase llmg_1540 PF02660 llmg_1540 llmg_1541 PF00462 Glutaredoxin llmg_1542 PF07972 NrdI Flavodoxin like llmg_1543 PF00317 Ribonucleotide reductase, all-alpha domain llmg_1543 PF02867 Ribonucleotide reductase, barrel domain llmg_1543 PF08343 Ribonucleotide reductase N-terminal llmg_1544 PF00268 Ribonucleotide reductase, small chain llmg_1545 PF02687 llmg_1545 llmg_1546 PF00005 ABC transporter llmg_1547 PF00472 RF-1 domain llmg_1547 PF03462 PCRF domain llmg_1548 PF00149 Calcineurin-like phosphoesterase llmg_1550 PF04167 Protein of unknown function (DUF402) llmg_1551 PF01226 Formate/nitrite transporter llmg_1553 PF00005 ABC transporter llmg_1553 PF13732 llmg_1553 llmg_1554 PF00440 Bacterial regulatory proteins, tetR family llmg_1555 PF02650 WhiA C-terminal HTH domain llmg_1555 PF10298 WhiA N-terminal LAGLIDADG-like domain llmg_1555 PF14527 WhiA LAGLIDADG-like domain llmg_1556 PF01933 Uncharacterised protein family UPF0052 llmg_1557 PF03668 llmg_1557 llmg_1558 PF13091 PLD-like domain llmg_1558 PF13396 llmg_1558 llmg_1559 PF00027 Cyclic nucleotide-binding domain llmg_1559 PF13545 Crp-like helix-turn-helix domain llmg_1561 PF00122 E1-E2 ATPase llmg_1561 PF00702 haloacid dehalogenase-like hydrolase llmg_1563 PF05656 llmg_1563 llmg_1564 PF01527 Transposase llmg_1565 PF00665 Integrase core domain llmg_1565 PF13276 llmg_1565 llmg_1566 PF01527 Transposase llmg_1566 PF13518 Helix-turn-helix domain llmg_1568 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 llmg_1568 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit llmg_1568 PF02378 Phosphotransferase system, EIIC llmg_1569 PF00294 pfkB family carbohydrate kinase llmg_1570 PF00455 llmg_1570 llmg_1570 PF08220 DeoR-like helix-turn-helix domain llmg_1571 PF01546 Peptidase family M20/M25/M40 llmg_1571 PF07687 Peptidase dimerisation domain llmg_1572 PF06100 Streptococcal 67 kDa myosin-cross-reactive antigen like family llmg_1574 PF00012 Hsp70 protein llmg_1575 PF01025 GrpE llmg_1576 PF01628 HrcA protein C terminal domain llmg_1576 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding llmg_1578 PF02557 D-alanyl-D-alanine carboxypeptidase llmg_1579 PF00300 Histidine phosphatase superfamily (branch 1) llmg_1581 PF05167 Uncharacterised ACR (DUF711) llmg_1582 PF13740 ACT domain llmg_1583 PF01040 UbiA prenyltransferase family llmg_1585 PF00857 Isochorismatase family llmg_1586 PF00575 S1 RNA binding domain llmg_1586 PF00773 RNB domain llmg_1586 PF08206 Ribonuclease B OB domain llmg_1587 PF03840 Preprotein translocase SecG subunit llmg_1588 PF07992 Pyridine nucleotide-disulphide oxidoreductase llmg_1589 PF13268 llmg_1589 llmg_1590 PF00005 ABC transporter llmg_1591 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1593 PF00497 Bacterial extracellular solute-binding proteins, family 3 llmg_1594 PF00877 NlpC/P60 family llmg_1595 PF01268 Formate--tetrahydrofolate ligase llmg_1596 PF01906 Putative heavy-metal-binding llmg_1597 PF04266 ASCH domain llmg_1599 PF01048 Phosphorylase superfamily llmg_1600 PF12674 llmg_1600 llmg_1601 PF01676 Metalloenzyme superfamily llmg_1602 PF03816 Cell envelope-related transcriptional attenuator domain llmg_1603 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase llmg_1604 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase llmg_1606 PF01467 Cytidylyltransferase llmg_1608 PF04616 Glycosyl hydrolases family 43 llmg_1609 PF13472 GDSL-like Lipase/Acylhydrolase family llmg_1611 PF00665 Integrase core domain llmg_1612 PF01695 IstB-like ATP binding protein llmg_1616 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain llmg_1616 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain llmg_1616 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain llmg_1617 PF00535 Glycosyl transferase family 2 llmg_1620 PF00535 Glycosyl transferase family 2 llmg_1621 PF00535 Glycosyl transferase family 2 llmg_1622 PF01061 llmg_1622 llmg_1623 PF00005 ABC transporter llmg_1623 PF01476 LysM domain llmg_1624 PF09992 Predicted periplasmic protein (DUF2233) llmg_1625 PF16069 llmg_1625 llmg_1627 PF12802 MarR family llmg_1628 PF15983 llmg_1628 llmg_1629 PF08241 Methyltransferase domain llmg_1631 PF00204 DNA gyrase B llmg_1631 PF00986 DNA gyrase B subunit, carboxyl terminus llmg_1631 PF01751 Toprim domain llmg_1631 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase llmg_1632 PF13419 Haloacid dehalogenase-like hydrolase llmg_1633 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily llmg_1635 PF00005 ABC transporter llmg_1636 PF00892 EamA-like transporter family llmg_1637 PF03390 llmg_1637 llmg_1638 PF00390 Malic enzyme, N-terminal domain llmg_1638 PF03949 Malic enzyme, NAD binding domain llmg_1639 PF00005 ABC transporter llmg_1641 PF13561 Enoyl-(Acyl carrier protein) reductase llmg_1642 PF00107 Zinc-binding dehydrogenase llmg_1642 PF08240 Alcohol dehydrogenase GroES-like domain llmg_1643 PF01098 llmg_1643 llmg_1644 PF09335 llmg_1644 llmg_1645 PF00575 S1 RNA binding domain llmg_1646 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD llmg_1647 PF08282 haloacid dehalogenase-like hydrolase llmg_1648 PF00072 Response regulator receiver domain llmg_1648 PF00196 Bacterial regulatory proteins, luxR family llmg_1649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase llmg_1649 PF07730 Histidine kinase llmg_1650 PF09922 Cell wall-active antibiotics response protein (DUF2154) llmg_1652 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily llmg_1653 PF05257 CHAP domain llmg_1654 PF00665 Integrase core domain llmg_1654 PF13276 llmg_1654 llmg_1655 PF01527 Transposase llmg_1657 PF00589 Phage integrase family llmg_1657 PF02899 Phage integrase, N-terminal SAM-like domain llmg_1658 PF01883 Domain of unknown function DUF59 llmg_1659 PF01061 llmg_1659 llmg_1659 PF12698 ABC-2 family transporter protein llmg_1660 PF00440 Bacterial regulatory proteins, tetR family llmg_1661 PF00216 Bacterial DNA-binding protein llmg_1662 PF00582 Universal stress protein family llmg_1664 PF04973 llmg_1664 llmg_1666 PF03729 llmg_1666 llmg_1667 PF00535 Glycosyl transferase family 2 llmg_1669 PF00583 Acetyltransferase (GNAT) family llmg_1670 PF13474 SnoaL-like domain llmg_1671 PF01245 Ribosomal protein L19 llmg_1672 PF04607 Region found in RelA / SpoT proteins llmg_1674 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family llmg_1674 PF03466 LysR substrate binding domain llmg_1675 PF00005 ABC transporter llmg_1676 PF02687 llmg_1676 llmg_1678 PF00953 Glycosyl transferase family 4 llmg_1678 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 llmg_1679 PF00905 Penicillin binding protein transpeptidase domain llmg_1679 PF03717 Penicillin-binding Protein dimerisation domain llmg_1679 PF03793 PASTA domain llmg_1681 PF01795 MraW methylase family llmg_1682 PF05656 llmg_1682 llmg_1683 PF05656 llmg_1683 llmg_1684 PF06736 llmg_1684 llmg_1685 PF02463 RecF/RecN/SMC N terminal domain llmg_1686 PF01316 Arginine repressor, DNA binding domain llmg_1686 PF02863 Arginine repressor, C-terminal domain llmg_1687 PF01728 FtsJ-like methyltransferase llmg_1688 PF00583 Acetyltransferase (GNAT) family llmg_1689 PF00348 Polyprenyl synthetase llmg_1691 PF02609 Exonuclease VII small subunit llmg_1692 PF02601 llmg_1692 llmg_1692 PF13742 llmg_1692 llmg_1693 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain llmg_1693 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain llmg_1694 PF00122 E1-E2 ATPase llmg_1694 PF00702 haloacid dehalogenase-like hydrolase llmg_1699 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1699 PF04069 Substrate binding domain of ABC-type glycine betaine transport system llmg_1700 PF00005 ABC transporter llmg_1702 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain llmg_1702 PF07992 Pyridine nucleotide-disulphide oxidoreductase llmg_1703 PF03960 ArsC family llmg_1704 PF00842 Alanine racemase, C-terminal domain llmg_1704 PF01168 Alanine racemase, N-terminal domain llmg_1705 PF01648 4'-phosphopantetheinyl transferase superfamily llmg_1706 PF01546 Peptidase family M20/M25/M40 llmg_1707 PF08759 Domain of unknown function (DUF1792) llmg_1708 PF01501 Glycosyl transferase family 8 llmg_1709 PF14602 Hexapeptide repeat of succinyl-transferase llmg_1710 PF00535 Glycosyl transferase family 2 llmg_1713 PF00665 Integrase core domain llmg_1713 PF13276 llmg_1713 llmg_1714 PF01527 Transposase llmg_1715 PF01527 Transposase llmg_1716 PF00665 Integrase core domain llmg_1716 PF13276 llmg_1716 llmg_1717 PF00633 Helix-hairpin-helix motif llmg_1717 PF00730 HhH-GPD superfamily base excision DNA repair protein llmg_1717 PF10576 Iron-sulfur binding domain of endonuclease III llmg_1717 PF14815 NUDIX domain llmg_1718 PF01541 GIY-YIG catalytic domain llmg_1718 PF02151 UvrB/uvrC motif llmg_1718 PF08459 UvrC Helix-hairpin-helix N-terminal llmg_1719 PF04973 llmg_1719 llmg_1720 PF01048 Phosphorylase superfamily llmg_1723 PF11966 llmg_1723 llmg_1724 PF00575 S1 RNA binding domain llmg_1725 PF03054 tRNA methyl transferase llmg_1726 PF16285 llmg_1726 llmg_1727 PF09586 llmg_1727 llmg_1729 PF00122 E1-E2 ATPase llmg_1729 PF00403 Heavy-metal-associated domain llmg_1729 PF00702 haloacid dehalogenase-like hydrolase llmg_1730 PF00403 Heavy-metal-associated domain llmg_1731 PF03965 Penicillinase repressor llmg_1732 PF03313 llmg_1732 llmg_1733 PF01842 ACT domain llmg_1733 PF03315 Serine dehydratase beta chain llmg_1734 PF07992 Pyridine nucleotide-disulphide oxidoreductase llmg_1735 PF07992 Pyridine nucleotide-disulphide oxidoreductase llmg_1737 PF00561 alpha/beta hydrolase fold llmg_1738 PF00232 Glycosyl hydrolase family 1 llmg_1740 PF01380 SIS domain llmg_1740 PF01418 Helix-turn-helix domain, rpiR family llmg_1741 PF00133 tRNA synthetases class I (I, L, M and V) llmg_1741 PF08264 Anticodon-binding domain of tRNA llmg_1741 PF09334 tRNA synthetases class I (M) llmg_1741 PF13603 Leucyl-tRNA synthetase, Domain 2 llmg_1742 PF02954 Bacterial regulatory protein, Fis family llmg_1743 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase llmg_1743 PF14572 Phosphoribosyl synthetase-associated domain llmg_1744 PF00448 SRP54-type protein, GTPase domain llmg_1744 PF02881 SRP54-type protein, helical bundle domain llmg_1746 PF08282 haloacid dehalogenase-like hydrolase llmg_1747 PF00324 Amino acid permease llmg_1748 PF07907 llmg_1748 llmg_1749 PF07907 llmg_1749 llmg_1751 PF00884 Sulfatase llmg_1752 PF02463 RecF/RecN/SMC N terminal domain llmg_1752 PF06470 SMC proteins Flexible Hinge Domain llmg_1753 PF00035 Double-stranded RNA binding motif llmg_1753 PF14622 Ribonuclease-III-like llmg_1754 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain llmg_1754 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain llmg_1755 PF00696 Amino acid kinase family llmg_1756 PF00202 Aminotransferase class-III llmg_1757 PF01960 ArgJ family llmg_1758 PF01118 Semialdehyde dehydrogenase, NAD binding domain llmg_1758 PF02774 Semialdehyde dehydrogenase, dimerisation domain llmg_1759 PF13460 NADH(P)-binding llmg_1760 PF06177 llmg_1760 llmg_1762 PF13561 Enoyl-(Acyl carrier protein) reductase llmg_1763 PF11195 llmg_1763 llmg_1764 PF01588 Putative tRNA binding domain llmg_1764 PF08264 Anticodon-binding domain of tRNA llmg_1764 PF09334 tRNA synthetases class I (M) llmg_1765 PF03372 Endonuclease/Exonuclease/phosphatase family llmg_1766 PF13302 Acetyltransferase (GNAT) domain llmg_1767 PF00455 llmg_1767 llmg_1768 PF03960 ArsC family llmg_1769 PF02583 Metal-sensitive transcriptional repressor llmg_1770 PF00581 Rhodanese-like domain llmg_1770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain llmg_1770 PF07992 Pyridine nucleotide-disulphide oxidoreductase llmg_1771 PF00581 Rhodanese-like domain llmg_1772 PF00581 Rhodanese-like domain llmg_1773 PF05532 CsbD-like llmg_1775 PF00291 Pyridoxal-phosphate dependent enzyme llmg_1776 PF01053 Cys/Met metabolism PLP-dependent enzyme llmg_1777 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit llmg_1778 PF01039 Carboxyl transferase domain llmg_1779 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain llmg_1779 PF02785 Biotin carboxylase C-terminal domain llmg_1779 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain llmg_1781 PF07977 FabA-like domain llmg_1782 PF00364 Biotin-requiring enzyme llmg_1783 PF00109 Beta-ketoacyl synthase, N-terminal domain llmg_1783 PF02801 Beta-ketoacyl synthase, C-terminal domain llmg_1784 PF13561 Enoyl-(Acyl carrier protein) reductase llmg_1785 PF00698 Acyl transferase domain llmg_1786 PF00550 Phosphopantetheine attachment site llmg_1787 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal llmg_1787 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III llmg_1788 PF01047 MarR family llmg_1789 PF01238 Phosphomannose isomerase type I llmg_1791 PF02033 Ribosome-binding factor A llmg_1792 PF00009 Elongation factor Tu GTP binding domain llmg_1792 PF04760 Translation initiation factor IF-2, N-terminal region llmg_1792 PF11987 Translation-initiation factor 2 llmg_1793 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family llmg_1794 PF04296 Protein of unknown function (DUF448) llmg_1796 PF00575 S1 RNA binding domain llmg_1796 PF08529 NusA N-terminal domain llmg_1796 PF13184 NusA-like KH domain llmg_1797 PF02576 Uncharacterised BCR, YhbC family COG0779 llmg_1797 PF17384 llmg_1797 llmg_1798 PF03788 llmg_1798 llmg_1799 PF04172 llmg_1799 llmg_1801 PF04203 Sortase family llmg_1801 PF13151 llmg_1801 llmg_1804 PF01381 Helix-turn-helix llmg_1805 PF01926 50S ribosome-binding GTPase llmg_1805 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal llmg_1806 PF13599 Pentapeptide repeats (9 copies) llmg_1807 PF00881 Nitroreductase family llmg_1808 PF01695 IstB-like ATP binding protein llmg_1808 PF07319 Primosomal protein DnaI N-terminus llmg_1809 PF07261 Replication initiation and membrane attachment llmg_1810 PF03477 ATP cone domain llmg_1811 PF02390 Putative methyltransferase llmg_1812 PF01636 Phosphotransferase enzyme family llmg_1813 PF06257 Protein of unknown function (DUF1021) llmg_1814 PF00772 DnaB-like helicase N terminal domain llmg_1814 PF03796 DnaB-like helicase C terminal domain llmg_1815 PF01281 Ribosomal protein L9, N-terminal domain llmg_1815 PF03948 Ribosomal protein L9, C-terminal domain llmg_1816 PF01368 DHH family llmg_1816 PF02272 DHHA1 domain llmg_1817 PF13419 Haloacid dehalogenase-like hydrolase llmg_1818 PF13463 Winged helix DNA-binding domain llmg_1819 PF01734 Patatin-like phospholipase llmg_1820 PF00696 Amino acid kinase family llmg_1820 PF13840 ACT domain llmg_1822 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase llmg_1822 PF08282 haloacid dehalogenase-like hydrolase llmg_1823 PF00710 Asparaginase llmg_1825 PF01368 DHH family llmg_1825 PF02272 DHHA1 domain llmg_1826 PF00571 CBS domain llmg_1826 PF07085 DRTGG domain llmg_1827 PF13302 Acetyltransferase (GNAT) domain llmg_1828 PF00425 chorismate binding enzyme llmg_1829 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain llmg_1829 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain llmg_1829 PF16582 llmg_1829 llmg_1830 PF12697 Alpha/beta hydrolase family llmg_1831 PF00378 Enoyl-CoA hydratase/isomerase family llmg_1832 PF00501 AMP-binding enzyme llmg_1832 PF13193 AMP-binding enzyme C-terminal domain llmg_1833 PF13378 Enolase C-terminal domain-like llmg_1834 PF03061 Thioesterase superfamily llmg_1835 PF00356 Bacterial regulatory proteins, lacI family llmg_1835 PF13377 Periplasmic binding protein-like domain llmg_1836 PF01055 Glycosyl hydrolases family 31 llmg_1837 PF04854 llmg_1837 llmg_1838 PF01547 Bacterial extracellular solute-binding protein llmg_1839 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1840 PF00665 Integrase core domain llmg_1840 PF13276 llmg_1840 llmg_1841 PF01527 Transposase llmg_1842 PF00589 Phage integrase family llmg_1843 PF14437 llmg_1843 llmg_1844 PF00149 Calcineurin-like phosphoesterase llmg_1845 PF12706 Beta-lactamase superfamily domain llmg_1846 PF00313 'Cold-shock' DNA-binding domain llmg_1847 PF00313 'Cold-shock' DNA-binding domain llmg_1849 PF01717 Cobalamin-independent synthase, Catalytic domain llmg_1850 PF08240 Alcohol dehydrogenase GroES-like domain llmg_1850 PF13602 Zinc-binding dehydrogenase llmg_1851 PF06912 llmg_1851 llmg_1852 PF09855 llmg_1852 llmg_1853 PF00005 ABC transporter llmg_1853 PF02687 llmg_1853 llmg_1853 PF12704 MacB-like periplasmic core domain llmg_1854 PF09335 llmg_1854 llmg_1856 PF00005 ABC transporter llmg_1856 PF00664 ABC transporter transmembrane region llmg_1857 PF13472 GDSL-like Lipase/Acylhydrolase family llmg_1859 PF12724 Flavodoxin domain llmg_1860 PF01047 MarR family llmg_1861 PF00005 ABC transporter llmg_1861 PF00664 ABC transporter transmembrane region llmg_1862 PF00005 ABC transporter llmg_1862 PF00664 ABC transporter transmembrane region llmg_1863 PF02322 llmg_1863 llmg_1864 PF01654 llmg_1864 llmg_1865 PF00854 POT family llmg_1867 PF03047 llmg_1867 llmg_1868 PF01381 Helix-turn-helix llmg_1869 PF00128 Alpha amylase, catalytic domain llmg_1871 PF00343 Carbohydrate phosphorylase llmg_1872 PF00534 Glycosyl transferases group 1 llmg_1872 PF08323 Starch synthase catalytic domain llmg_1873 PF00483 Nucleotidyl transferase llmg_1874 PF00132 Bacterial transferase hexapeptide (six repeats) llmg_1874 PF00483 Nucleotidyl transferase llmg_1878 PF01029 NusB family llmg_1879 PF03780 llmg_1879 llmg_1880 PF01132 Elongation factor P (EF-P) OB domain llmg_1880 PF08207 Elongation factor P (EF-P) KOW-like domain llmg_1880 PF09285 Elongation factor P, C-terminal llmg_1881 PF00557 Metallopeptidase family M24 llmg_1881 PF01321 Creatinase/Prolidase N-terminal domain llmg_1882 PF00398 Ribosomal RNA adenine dimethylase llmg_1883 PF01751 Toprim domain llmg_1883 PF13331 llmg_1883 llmg_1885 PF01026 TatD related DNase llmg_1886 PF00589 Phage integrase family llmg_1886 PF14659 Phage integrase, N-terminal SAM-like domain llmg_1888 PF07275 Antirestriction protein (ArdA) llmg_1890 PF05257 CHAP domain llmg_1893 PF00665 Integrase core domain llmg_1893 PF13276 llmg_1893 llmg_1894 PF00300 Histidine phosphatase superfamily (branch 1) llmg_1895 PF01895 PhoU domain llmg_1896 PF00005 ABC transporter llmg_1897 PF00005 ABC transporter llmg_1898 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1899 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1900 PF12849 PBP superfamily domain llmg_1901 PF12849 PBP superfamily domain llmg_1902 PF01668 SmpB protein llmg_1903 PF01638 HxlR-like helix-turn-helix llmg_1904 PF00881 Nitroreductase family llmg_1905 PF13472 GDSL-like Lipase/Acylhydrolase family llmg_1906 PF01411 tRNA synthetases class II (A) llmg_1906 PF02272 DHHA1 domain llmg_1906 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain llmg_1907 PF13145 PPIC-type PPIASE domain llmg_1908 PF01596 O-methyltransferase llmg_1909 PF01432 Peptidase family M3 llmg_1909 PF08439 Oligopeptidase F llmg_1911 PF02698 DUF218 domain llmg_1912 PF06028 Alpha/beta hydrolase of unknown function (DUF915) llmg_1913 PF00860 Permease family llmg_1914 PF08282 haloacid dehalogenase-like hydrolase llmg_1915 PF02754 llmg_1915 llmg_1916 PF02589 Uncharacterised ACR, YkgG family COG1556 llmg_1916 PF13183 4Fe-4S dicluster domain llmg_1917 PF02589 Uncharacterised ACR, YkgG family COG1556 llmg_1918 PF01027 Inhibitor of apoptosis-promoting Bax1 llmg_1919 PF00781 Diacylglycerol kinase catalytic domain llmg_1920 PF01966 HD domain llmg_1921 PF01649 Ribosomal protein S20 llmg_1922 PF13538 UvrD-like helicase C-terminal domain llmg_1922 PF13604 AAA domain llmg_1922 PF14490 Helix-hairpin-helix containing domain llmg_1923 PF00300 Histidine phosphatase superfamily (branch 1) llmg_1924 PF00800 Prephenate dehydratase llmg_1925 PF01202 Shikimate kinase llmg_1926 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) llmg_1927 PF02153 Prephenate dehydrogenase llmg_1928 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase llmg_1929 PF00072 Response regulator receiver domain llmg_1929 PF00486 Transcriptional regulatory protein, C terminal llmg_1930 PF04892 llmg_1930 llmg_1932 PF00005 ABC transporter llmg_1933 PF06486 Protein of unknown function (DUF1093) llmg_1934 PF01264 Chorismate synthase llmg_1936 PF06335 Protein of unknown function (DUF1054) llmg_1937 PF04657 llmg_1937 llmg_1938 PF01761 3-dehydroquinate synthase llmg_1939 PF08501 Shikimate dehydrogenase substrate binding domain llmg_1941 PF09335 llmg_1941 llmg_1942 PF00497 Bacterial extracellular solute-binding proteins, family 3 llmg_1942 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1943 PF00005 ABC transporter llmg_1945 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain llmg_1945 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain llmg_1946 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain llmg_1946 PF02874 ATP synthase alpha/beta family, beta-barrel domain llmg_1947 PF00231 ATP synthase llmg_1948 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain llmg_1948 PF00306 ATP synthase alpha/beta chain, C terminal domain llmg_1948 PF02874 ATP synthase alpha/beta family, beta-barrel domain llmg_1949 PF00213 ATP synthase delta (OSCP) subunit llmg_1950 PF00430 ATP synthase B/B' CF(0) llmg_1951 PF00119 ATP synthase A chain llmg_1952 PF00137 ATP synthase subunit C llmg_1953 PF00756 Putative esterase llmg_1955 PF10531 SLBB domain llmg_1955 PF12836 Helix-hairpin-helix motif llmg_1956 PF12698 ABC-2 family transporter protein llmg_1957 PF00005 ABC transporter llmg_1957 PF13732 llmg_1957 llmg_1959 PF13420 Acetyltransferase (GNAT) domain llmg_1960 PF03600 Citrate transporter llmg_1961 PF03070 TENA/THI-4/PQQC family llmg_1962 PF05495 CHY zinc finger llmg_1963 PF02237 Biotin protein ligase C terminal domain llmg_1963 PF03099 Biotin/lipoate A/B protein ligase family llmg_1963 PF08279 HTH domain llmg_1964 PF02632 BioY family llmg_1965 PF00501 AMP-binding enzyme llmg_1966 PF08817 WXG100 protein secretion system (Wss), protein YukD llmg_1968 PF06013 Proteins of 100 residues with WXG llmg_1969 PF01458 Uncharacterized protein family (UPF0051) llmg_1970 PF01592 NifU-like N terminal domain llmg_1972 PF00266 Aminotransferase class-V llmg_1973 PF01458 Uncharacterized protein family (UPF0051) llmg_1974 PF00005 ABC transporter llmg_1975 PF13518 Helix-turn-helix domain llmg_1976 PF00953 Glycosyl transferase family 4 llmg_1977 PF05389 Negative regulator of genetic competence (MecA) llmg_1978 PF00005 ABC transporter llmg_1979 PF00528 Binding-protein-dependent transport system inner membrane component llmg_1980 PF00781 Diacylglycerol kinase catalytic domain llmg_1981 PF00623 RNA polymerase Rpb1, domain 2 llmg_1981 PF04983 RNA polymerase Rpb1, domain 3 llmg_1981 PF04997 RNA polymerase Rpb1, domain 1 llmg_1981 PF04998 RNA polymerase Rpb1, domain 5 llmg_1981 PF05000 RNA polymerase Rpb1, domain 4 llmg_1982 PF00562 RNA polymerase Rpb2, domain 6 llmg_1982 PF04560 RNA polymerase Rpb2, domain 7 llmg_1982 PF04561 RNA polymerase Rpb2, domain 2 llmg_1982 PF04563 RNA polymerase beta subunit llmg_1982 PF04565 RNA polymerase Rpb2, domain 3 llmg_1982 PF10385 RNA polymerase beta subunit external 1 domain llmg_1983 PF06018 CodY GAF-like domain llmg_1985 PF01431 Peptidase family M13 llmg_1985 PF05649 Peptidase family M13 llmg_1986 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain llmg_1988 PF01943 llmg_1988 llmg_1988 PF14667 Polysaccharide biosynthesis C-terminal domain llmg_1989 PF02875 Mur ligase family, glutamate ligase domain llmg_1989 PF08245 Mur ligase middle domain llmg_1991 PF00107 Zinc-binding dehydrogenase llmg_1991 PF08240 Alcohol dehydrogenase GroES-like domain llmg_1992 PF00270 DEAD/DEAH box helicase llmg_1992 PF00271 Helicase conserved C-terminal domain llmg_1992 PF00570 HRDC domain llmg_1992 PF09382 RQC domain llmg_1992 PF16124 llmg_1992 llmg_1993 PF13520 Amino acid permease llmg_1994 PF01546 Peptidase family M20/M25/M40 llmg_1994 PF07687 Peptidase dimerisation domain llmg_1995 PF08820 llmg_1995 llmg_1996 PF01368 DHH family llmg_1996 PF02833 DHHA2 domain llmg_1997 PF04055 Radical SAM superfamily llmg_1997 PF13353 4Fe-4S single cluster domain llmg_1999 PF00571 CBS domain llmg_1999 PF01595 llmg_1999 llmg_1999 PF03471 Transporter associated domain llmg_2000 PF01594 llmg_2000 llmg_2002 PF02082 Transcriptional regulator llmg_2003 PF01370 NAD dependent epimerase/dehydratase family llmg_2004 PF13673 Acetyltransferase (GNAT) domain llmg_2007 PF03167 Uracil DNA glycosylase superfamily llmg_2008 PF00005 ABC transporter llmg_2010 PF01541 GIY-YIG catalytic domain llmg_2011 PF00324 Amino acid permease llmg_2012 PF01408 Oxidoreductase family, NAD-binding Rossmann fold llmg_2013 PF04263 Thiamin pyrophosphokinase, catalytic domain llmg_2013 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain llmg_2014 PF03819 MazG nucleotide pyrophosphohydrolase domain llmg_2017 PF00152 tRNA synthetases class II (D, K and N) llmg_2017 PF01336 OB-fold nucleic acid binding domain llmg_2019 PF00155 Aminotransferase class I and II llmg_2021 PF00929 Exonuclease llmg_2021 PF13307 Helicase C-terminal domain llmg_2023 PF00582 Universal stress protein family llmg_2024 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle llmg_2025 PF00528 Binding-protein-dependent transport system inner membrane component llmg_2026 PF00528 Binding-protein-dependent transport system inner membrane component llmg_2029 PF00453 Ribosomal protein L20 llmg_2030 PF01632 Ribosomal protein L35 llmg_2031 PF00707 Translation initiation factor IF-3, C-terminal domain llmg_2031 PF05198 Translation initiation factor IF-3, N-terminal domain llmg_2034 PF13419 Haloacid dehalogenase-like hydrolase llmg_2035 PF01134 Glucose inhibited division protein A llmg_2035 PF13932 GidA associated domain 3 llmg_2037 PF06279 llmg_2037 llmg_2039 PF00636 Ribonuclease III domain llmg_2040 PF01406 tRNA synthetases class I (C) catalytic domain llmg_2040 PF09190 DALR domain llmg_2041 PF06736 llmg_2041 llmg_2042 PF00132 Bacterial transferase hexapeptide (six repeats) llmg_2044 PF00013 KH domain llmg_2044 PF00575 S1 RNA binding domain llmg_2044 PF01138 3' exoribonuclease family, domain 1 llmg_2044 PF03725 3' exoribonuclease family, domain 2 llmg_2044 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain llmg_2046 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase llmg_2046 PF14572 Phosphoribosyl synthetase-associated domain llmg_2047 PF00582 Universal stress protein family llmg_2048 PF00266 Aminotransferase class-V llmg_2049 PF08866 Putative amino acid metabolism llmg_2050 PF00009 Elongation factor Tu GTP binding domain llmg_2050 PF03143 Elongation factor Tu C-terminal domain llmg_2050 PF03144 Elongation factor Tu domain 2 llmg_2052 PF13253 llmg_2052 llmg_2053 PF00133 tRNA synthetases class I (I, L, M and V) llmg_2053 PF06827 Zinc finger found in FPG and IleRS llmg_2053 PF08264 Anticodon-binding domain of tRNA llmg_2055 PF05103 DivIVA protein llmg_2056 PF01479 S4 domain llmg_2057 PF02325 llmg_2057 llmg_2058 PF04472 Protein of unknown function (DUF552) llmg_2059 PF01168 Alanine racemase, N-terminal domain llmg_2060 PF00091 Tubulin/FtsZ family, GTPase domain llmg_2060 PF12327 FtsZ family, C-terminal domain llmg_2061 PF02491 SHS2 domain inserted in FTSA llmg_2061 PF11983 llmg_2061 llmg_2061 PF14450 Cell division protein FtsA llmg_2062 PF02645 Uncharacterised protein, DegV family COG1307 llmg_2063 PF00588 SpoU rRNA Methylase family llmg_2063 PF08032 RNA 2'-O ribose methyltransferase substrate binding llmg_2064 PF01266 FAD dependent oxidoreductase llmg_2065 PF00248 Aldo/keto reductase family llmg_2066 PF07690 Major Facilitator Superfamily llmg_2067 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family llmg_2067 PF03466 LysR substrate binding domain llmg_2068 PF13411 MerR HTH family regulatory protein llmg_2069 PF03051 Peptidase C1-like family llmg_2070 PF01966 HD domain llmg_2073 PF01048 Phosphorylase superfamily llmg_2075 PF00293 NUDIX domain llmg_2076 PF00132 Bacterial transferase hexapeptide (six repeats) llmg_2076 PF12804 MobA-like NTP transferase domain llmg_2077 PF03807 NADP oxidoreductase coenzyme F420-dependent llmg_2077 PF14748 Pyrroline-5-carboxylate reductase dimerisation llmg_2078 PF00312 Ribosomal protein S15 llmg_2079 PF00069 Protein kinase domain llmg_2079 PF03793 PASTA domain llmg_2080 PF13672 Protein phosphatase 2C llmg_2081 PF01029 NusB family llmg_2081 PF01189 NOL1/NOP2/sun family llmg_2082 PF01183 Glycosyl hydrolases family 25 llmg_2083 PF09682 llmg_2083 llmg_2088 PF05709 Phage tail protein llmg_2089 PF10145 llmg_2089 llmg_2090 PF06896 llmg_2090 llmg_2091 PF04630 llmg_2091 llmg_2092 PF05657 llmg_2092 llmg_2093 PF04883 llmg_2093 llmg_2094 PF05521 Phage head-tail joining protein llmg_2096 PF05065 Phage capsid family llmg_2097 PF00574 Clp protease llmg_2098 PF04860 Phage portal protein llmg_2099 PF06341 llmg_2099 llmg_2100 PF03354 llmg_2100 llmg_2102 PF05119 llmg_2102 llmg_2103 PF01844 HNH endonuclease llmg_2105 PF05263 llmg_2105 llmg_2109 PF01695 IstB-like ATP binding protein llmg_2110 PF00665 Integrase core domain llmg_2113 PF06600 llmg_2113 llmg_2114 PF00692 dUTPase llmg_2115 PF07852 llmg_2115 llmg_2117 PF06563 llmg_2117 llmg_2122 PF06275 llmg_2122 llmg_2123 PF06356 llmg_2123 llmg_2125 PF06926 llmg_2125 llmg_2126 PF00436 Single-strand binding protein family llmg_2128 PF04098 Rad52/22 family double-strand break repair protein llmg_2131 PF10711 llmg_2131 llmg_2134 PF02498 llmg_2134 llmg_2134 PF03374 llmg_2134 llmg_2135 PF01381 Helix-turn-helix llmg_2139 PF01381 Helix-turn-helix llmg_2142 PF00589 Phage integrase family llmg_2142 PF14659 Phage integrase, N-terminal SAM-like domain llmg_2143 PF03780 llmg_2143 llmg_2144 PF10031 llmg_2144 llmg_2146 PF04226 llmg_2146 llmg_2147 PF00551 Formyl transferase llmg_2147 PF02911 Formyl transferase, C-terminal domain llmg_2148 PF06983 3-demethylubiquinone-9 3-methyltransferase llmg_2149 PF00293 NUDIX domain llmg_2150 PF12680 SnoaL-like domain llmg_2151 PF06224 llmg_2151 llmg_2152 PF06224 llmg_2152 llmg_2153 PF00271 Helicase conserved C-terminal domain llmg_2153 PF04851 Type III restriction enzyme, res subunit llmg_2154 PF01192 RNA polymerase Rpb6 llmg_2155 PF00625 Guanylate kinase llmg_2156 PF00013 KH domain llmg_2156 PF01966 HD domain llmg_2156 PF12072 llmg_2156 llmg_2157 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase llmg_2160 PF00438 S-adenosylmethionine synthetase, N-terminal domain llmg_2160 PF02772 S-adenosylmethionine synthetase, central domain llmg_2160 PF02773 S-adenosylmethionine synthetase, C-terminal domain llmg_2161 PF02353 Mycolic acid cyclopropane synthetase llmg_2162 PF02237 Biotin protein ligase C terminal domain llmg_2162 PF03099 Biotin/lipoate A/B protein ligase family llmg_2163 PF04024 llmg_2163 llmg_2164 PF13349 llmg_2164 llmg_2165 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase llmg_2165 PF05257 CHAP domain llmg_2167 PF01116 Fructose-bisphosphate aldolase class-II llmg_2168 PF03458 llmg_2168 llmg_2169 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) llmg_2169 PF02824 TGS domain llmg_2169 PF03129 Anticodon binding domain llmg_2169 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain llmg_2170 PF03477 ATP cone domain llmg_2171 PF01566 llmg_2171 llmg_2172 PF00881 Nitroreductase family llmg_2173 PF01527 Transposase llmg_2174 PF00665 Integrase core domain llmg_2174 PF13276 llmg_2174 llmg_2175 PF13518 Helix-turn-helix domain llmg_2176 PF14681 Uracil phosphoribosyltransferase llmg_2177 PF00999 Sodium/hydrogen exchanger family llmg_2181 PF01053 Cys/Met metabolism PLP-dependent enzyme llmg_2182 PF04204 Homoserine O-succinyltransferase llmg_2183 PF00293 NUDIX domain llmg_2185 PF01263 Aldose 1-epimerase llmg_2186 PF01966 HD domain llmg_2187 PF02646 llmg_2187 llmg_2189 PF01583 Adenylylsulphate kinase llmg_2190 PF00834 Ribulose-phosphate 3 epimerase family llmg_2193 PF03193 Protein of unknown function, DUF258 llmg_2193 PF16745 llmg_2193 llmg_2194 PF06725 3D domain llmg_2195 PF01588 Putative tRNA binding domain llmg_2195 PF03147 Ferredoxin-fold anticodon binding domain llmg_2195 PF03483 B3/4 domain llmg_2195 PF03484 tRNA synthetase B5 domain llmg_2196 PF01409 tRNA synthetases class II core domain (F) llmg_2196 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain llmg_2197 PF05870 Phenolic acid decarboxylase (PAD) llmg_2198 PF03551 Transcriptional regulator PadR-like family llmg_2198 PF10400 Virulence activator alpha C-term llmg_2199 PF00704 Glycosyl hydrolases family 18 llmg_2199 PF02839 Carbohydrate binding domain llmg_2200 PF03067 Chitin binding domain llmg_2201 PF00709 Adenylosuccinate synthetase llmg_2203 PF03596 llmg_2203 llmg_2204 PF01430 Hsp33 protein llmg_2205 PF01872 RibD C-terminal domain llmg_2209 PF01207 Dihydrouridine synthase (Dus) llmg_2212 PF02588 llmg_2212 llmg_2212 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) llmg_2213 PF02588 llmg_2213 llmg_2213 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) llmg_2214 PF02588 llmg_2214 llmg_2214 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) llmg_2215 PF00152 tRNA synthetases class II (D, K and N) llmg_2215 PF01336 OB-fold nucleic acid binding domain llmg_2215 PF02938 GAD domain llmg_2216 PF01230 HIT domain llmg_2217 PF03129 Anticodon binding domain llmg_2217 PF13393 Histidyl-tRNA synthetase llmg_2218 PF01381 Helix-turn-helix llmg_2224 PF01066 CDP-alcohol phosphatidyltransferase llmg_2225 PF13413 Helix-turn-helix domain llmg_2226 PF00675 Insulinase (Peptidase family M16) llmg_2226 PF05193 Peptidase M16 inactive domain llmg_2227 PF05193 Peptidase M16 inactive domain llmg_2228 PF13275 S4 domain llmg_2229 PF02463 RecF/RecN/SMC N terminal domain llmg_2230 PF02627 Carboxymuconolactone decarboxylase family llmg_2231 PF13411 MerR HTH family regulatory protein llmg_2232 PF06028 Alpha/beta hydrolase of unknown function (DUF915) llmg_2233 PF16363 llmg_2233 llmg_2234 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain llmg_2234 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain llmg_2235 PF00288 GHMP kinases N terminal domain llmg_2235 PF08544 GHMP kinases C terminal llmg_2235 PF10509 Galactokinase galactose-binding signature llmg_2236 PF01263 Aldose 1-epimerase llmg_2237 PF13347 MFS/sugar transport protein llmg_2238 PF01380 SIS domain llmg_2238 PF01418 Helix-turn-helix domain, rpiR family llmg_2241 PF13521 AAA domain llmg_2242 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain llmg_2243 PF01136 llmg_2243 llmg_2243 PF16325 llmg_2243 llmg_2244 PF01136 llmg_2244 llmg_2245 PF11674 llmg_2245 llmg_2246 PF08241 Methyltransferase domain llmg_2248 PF13304 AAA domain llmg_2250 PF03592 Terminase small subunit llmg_2252 PF03288 Poxvirus D5 protein-like llmg_2252 PF08706 llmg_2252 llmg_2253 PF08708 Primase C terminal 1 (PriCT-1) llmg_2253 PF09250 Bifunctional DNA primase/polymerase, N-terminal llmg_2261 PF09669 llmg_2261 llmg_2262 PF13443 Cro/C1-type HTH DNA-binding domain llmg_2268 PF00589 Phage integrase family llmg_2268 PF14659 Phage integrase, N-terminal SAM-like domain llmg_2269 PF03932 CutC family llmg_2270 PF05975 llmg_2270 llmg_2271 PF00005 ABC transporter llmg_2272 PF03009 Glycerophosphoryl diester phosphodiesterase family llmg_2272 PF10110 llmg_2272 llmg_2273 PF01230 HIT domain llmg_2276 PF00687 Ribosomal protein L1p/L10e family llmg_2277 PF00298 Ribosomal protein L11, RNA binding domain llmg_2277 PF03946 Ribosomal protein L11, N-terminal domain llmg_2279 PF00005 ABC transporter llmg_2280 PF06855 Protein of unknown function (DUF1250) llmg_2281 PF01625 Peptide methionine sulfoxide reductase llmg_2282 PF13509 S1 domain llmg_2283 PF00583 Acetyltransferase (GNAT) family llmg_2284 PF01765 Ribosome recycling factor llmg_2285 PF00696 Amino acid kinase family llmg_2288 PF00871 Acetokinase family llmg_2289 PF00871 Acetokinase family llmg_2292 PF00009 Elongation factor Tu GTP binding domain llmg_2292 PF00679 Elongation factor G C-terminus llmg_2292 PF03144 Elongation factor Tu domain 2 llmg_2292 PF14492 Elongation Factor G, domain II llmg_2297 PF04397 LytTr DNA-binding domain llmg_2298 PF06014 Bacterial protein of unknown function (DUF910) llmg_2299 PF00480 ROK family llmg_2300 PF00581 Rhodanese-like domain llmg_2302 PF00210 Ferritin-like domain llmg_2304 PF06750 llmg_2304 llmg_2305 PF00817 impB/mucB/samB family llmg_2305 PF11798 IMS family HHH motif llmg_2305 PF11799 impB/mucB/samB family C-terminal domain llmg_2306 PF04073 Aminoacyl-tRNA editing domain llmg_2307 PF13520 Amino acid permease llmg_2308 PF00155 Aminotransferase class I and II llmg_2309 PF00696 Amino acid kinase family llmg_2310 PF00696 Amino acid kinase family llmg_2311 PF13520 Amino acid permease llmg_2312 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain llmg_2312 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain llmg_2313 PF02274 Amidinotransferase llmg_2314 PF00750 tRNA synthetases class I (R) llmg_2314 PF03485 Arginyl tRNA synthetase N terminal domain llmg_2314 PF05746 DALR anticodon binding domain llmg_2315 PF01316 Arginine repressor, DNA binding domain llmg_2315 PF02863 Arginine repressor, C-terminal domain llmg_2316 PF01225 Mur ligase family, catalytic domain llmg_2316 PF02875 Mur ligase family, glutamate ligase domain llmg_2316 PF08245 Mur ligase middle domain llmg_2319 PF00176 SNF2 family N-terminal domain llmg_2319 PF00271 Helicase conserved C-terminal domain llmg_2319 PF04434 llmg_2319 llmg_2319 PF08455 llmg_2319 llmg_2320 PF00092 von Willebrand factor type A domain llmg_2321 PF00205 Thiamine pyrophosphate enzyme, central domain llmg_2321 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain llmg_2321 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain llmg_2322 PF00144 Beta-lactamase llmg_2323 PF14506 CppA N-terminal llmg_2323 PF14507 CppA C-terminal llmg_2324 PF08818 Domain of unknown function (DU1801) llmg_2325 PF12900 Pyridoxamine 5'-phosphate oxidase llmg_2326 PF02517 CAAX protease self-immunity llmg_2327 PF00230 Major intrinsic protein llmg_2328 PF02129 X-Pro dipeptidyl-peptidase (S15 family) llmg_2328 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain llmg_2328 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal llmg_2329 PF07722 Peptidase C26 llmg_2330 PF00497 Bacterial extracellular solute-binding proteins, family 3 llmg_2331 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain llmg_2331 PF07992 Pyridine nucleotide-disulphide oxidoreductase llmg_2332 PF00749 tRNA synthetases class I (E and Q), catalytic domain llmg_2333 PF00857 Isochorismatase family llmg_2334 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family llmg_2335 PF01569 PAP2 superfamily llmg_2336 PF00583 Acetyltransferase (GNAT) family llmg_2337 PF06304 Protein of unknown function (DUF1048) llmg_2338 PF06304 Protein of unknown function (DUF1048) llmg_2339 PF03551 Transcriptional regulator PadR-like family llmg_2342 PF06912 llmg_2342 llmg_2343 PF13481 AAA domain llmg_2343 PF13541 Subunit ChlI of Mg-chelatase llmg_2344 PF00535 Glycosyl transferase family 2 llmg_2345 PF13242 HAD-hyrolase-like llmg_2346 PF13580 SIS domain llmg_2347 PF00288 GHMP kinases N terminal domain llmg_2347 PF08544 GHMP kinases C terminal llmg_2349 PF01531 llmg_2349 llmg_2350 PF00535 Glycosyl transferase family 2 llmg_2351 PF00535 Glycosyl transferase family 2 llmg_2352 PF02388 FemAB family llmg_2353 PF01196 Ribosomal protein L17 llmg_2354 PF01000 RNA polymerase Rpb3/RpoA insert domain llmg_2354 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain llmg_2354 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain llmg_2355 PF00411 Ribosomal protein S11 llmg_2356 PF00416 Ribosomal protein S13/S18 llmg_2357 PF00444 Ribosomal protein L36 llmg_2358 PF01176 Translation initiation factor 1A / IF-1 llmg_2359 PF00406 Adenylate kinase llmg_2359 PF05191 Adenylate kinase, active site lid llmg_2361 PF00344 SecY translocase llmg_2362 PF00828 Ribosomal protein L18e/L15 llmg_2363 PF00327 Ribosomal protein L30p/L7e llmg_2364 PF00333 Ribosomal protein S5, N-terminal domain llmg_2364 PF03719 Ribosomal protein S5, C-terminal domain llmg_2365 PF00861 Ribosomal L18p/L5e family llmg_2366 PF00347 Ribosomal protein L6 llmg_2367 PF00410 Ribosomal protein S8 llmg_2370 PF00253 Ribosomal protein S14p/S29e llmg_2371 PF00281 Ribosomal protein L5 llmg_2371 PF00673 ribosomal L5P family C-terminus llmg_2372 PF00467 KOW motif llmg_2372 PF17136 llmg_2372 llmg_2373 PF00238 Ribosomal protein L14p/L23e llmg_2374 PF00366 Ribosomal protein S17 llmg_2375 PF00831 Ribosomal L29 protein llmg_2376 PF00252 Ribosomal protein L16p/L10e llmg_2377 PF00189 Ribosomal protein S3, C-terminal domain llmg_2377 PF07650 KH domain llmg_2378 PF00237 Ribosomal protein L22p/L17e llmg_2379 PF00203 Ribosomal protein S19 llmg_2380 PF00181 Ribosomal Proteins L2, RNA binding domain llmg_2380 PF03947 Ribosomal Proteins L2, C-terminal domain llmg_2381 PF00276 Ribosomal protein L23 llmg_2382 PF00573 Ribosomal protein L4/L1 family llmg_2383 PF00297 Ribosomal protein L3 llmg_2384 PF00338 Ribosomal protein S10p/S20e llmg_2385 PF01741 Large-conductance mechanosensitive channel, MscL llmg_2386 PF01554 MatE llmg_2387 PF00291 Pyridoxal-phosphate dependent enzyme llmg_2387 PF14821 Threonine synthase N terminus llmg_2388 PF00467 KOW motif llmg_2388 PF02357 Transcription termination factor nusG llmg_2389 PF00584 SecE/Sec61-gamma subunits of protein translocation complex llmg_2390 PF00471 Ribosomal protein L33 llmg_2391 PF01757 llmg_2391 llmg_2392 PF00905 Penicillin binding protein transpeptidase domain llmg_2392 PF00912 Transglycosylase llmg_2393 PF04239 Protein of unknown function (DUF421) llmg_2394 PF11694 llmg_2394 llmg_2395 PF01243 Pyridoxamine 5'-phosphate oxidase llmg_2396 PF00849 RNA pseudouridylate synthase llmg_2398 PF00950 llmg_2398 llmg_2399 PF00005 ABC transporter llmg_2400 PF01297 Periplasmic solute binding protein family llmg_2401 PF01047 MarR family llmg_2403 PF15980 llmg_2403 llmg_2404 PF11773 llmg_2404 llmg_2406 PF07963 Prokaryotic N-terminal methylation motif llmg_2407 PF00482 Type II secretion system (T2SS), protein F llmg_2408 PF00437 Type II/IV secretion system protein llmg_2409 PF00929 Exonuclease llmg_2409 PF02811 PHP domain llmg_2409 PF07733 Bacterial DNA polymerase III alpha subunit llmg_2409 PF11490 llmg_2409 llmg_2409 PF14480 llmg_2409 llmg_2409 PF14579 Helix-hairpin-helix motif llmg_2412 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) llmg_2412 PF03129 Anticodon binding domain llmg_2412 PF04073 Aminoacyl-tRNA editing domain llmg_2413 PF02163 Peptidase family M50 llmg_2413 PF13180 PDZ domain llmg_2414 PF01148 Cytidylyltransferase family llmg_2415 PF01255 Putative undecaprenyl diphosphate synthase llmg_2416 PF02699 Preprotein translocase subunit llmg_2417 PF08713 DNA alkylation repair enzyme llmg_2418 PF02590 Predicted SPOUT methyltransferase llmg_2419 PF13180 PDZ domain llmg_2419 PF13365 Trypsin-like peptidase domain llmg_2420 PF00534 Glycosyl transferases group 1 llmg_2420 PF13439 Glycosyltransferase Family 4 llmg_2421 PF00534 Glycosyl transferases group 1 llmg_2421 PF13439 Glycosyltransferase Family 4 llmg_2422 PF08796 Protein of unknown function (DUF1797) llmg_2424 PF05175 Methyltransferase small domain llmg_2425 PF00476 DNA polymerase family A llmg_2425 PF01367 5'-3' exonuclease, C-terminal SAM fold llmg_2425 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain llmg_2426 PF08282 haloacid dehalogenase-like hydrolase llmg_2428 PF06160 llmg_2428 llmg_2429 PF00889 Elongation factor TS llmg_2430 PF00318 Ribosomal protein S2 llmg_2431 PF10282 Lactonase, 7-bladed beta-propeller llmg_2432 PF00171 Aldehyde dehydrogenase family llmg_2432 PF00465 Iron-containing alcohol dehydrogenase llmg_2434 PF00881 Nitroreductase family llmg_2436 PF04055 Radical SAM superfamily llmg_2436 PF13353 4Fe-4S single cluster domain llmg_2439 PF07690 Major Facilitator Superfamily llmg_2440 PF04055 Radical SAM superfamily llmg_2440 PF13186 Iron-sulfur cluster-binding domain llmg_2440 PF13394 4Fe-4S single cluster domain llmg_2442 PF05362 Lon protease (S16) C-terminal proteolytic domain llmg_2442 PF13180 PDZ domain llmg_2443 PF01467 Cytidylyltransferase llmg_2444 PF03602 Conserved hypothetical protein 95 llmg_2445 PF07690 Major Facilitator Superfamily llmg_2446 PF07690 Major Facilitator Superfamily llmg_2447 PF13791 llmg_2447 llmg_2448 PF00342 Phosphoglucose isomerase llmg_2449 PF03692 llmg_2449 llmg_2450 PF00106 short chain dehydrogenase llmg_2451 PF01381 Helix-turn-helix llmg_2452 PF05368 NmrA-like family llmg_2453 PF01638 HxlR-like helix-turn-helix llmg_2455 PF00133 tRNA synthetases class I (I, L, M and V) llmg_2455 PF08264 Anticodon-binding domain of tRNA llmg_2455 PF10458 Valyl tRNA synthetase tRNA binding arm llmg_2458 PF07299 Fibronectin-binding protein (FBP) llmg_2459 PF08930 Domain of unknown function (DUF1912) llmg_2460 PF04237 YjbR llmg_2461 PF00583 Acetyltransferase (GNAT) family llmg_2463 PF03483 B3/4 domain llmg_2464 PF01938 TRAM domain llmg_2464 PF05958 tRNA (Uracil-5-)-methyltransferase llmg_2465 PF00746 llmg_2465 llmg_2465 PF06458 MucBP domain llmg_2466 PF02631 RecX family llmg_2467 PF02447 llmg_2467 llmg_2468 PF00370 FGGY family of carbohydrate kinases, N-terminal domain llmg_2468 PF02782 FGGY family of carbohydrate kinases, C-terminal domain llmg_2469 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain llmg_2469 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase llmg_2470 PF01380 SIS domain llmg_2470 PF01418 Helix-turn-helix domain, rpiR family llmg_2471 PF06124 Staphylococcal protein of unknown function (DUF960) llmg_2472 PF00149 Calcineurin-like phosphoesterase llmg_2473 PF01084 Ribosomal protein S18 llmg_2474 PF00436 Single-strand binding protein family llmg_2475 PF01250 Ribosomal protein S6 llmg_2476 PF02673 llmg_2476 llmg_2477 PF00324 Amino acid permease llmg_2478 PF13177 DNA polymerase III, delta subunit llmg_2479 PF01636 Phosphotransferase enzyme family llmg_2480 PF13185 GAF domain llmg_2481 PF01817 Chorismate mutase type II llmg_2484 PF00120 Glutamine synthetase, catalytic domain llmg_2484 PF03951 Glutamine synthetase, beta-Grasp domain llmg_2485 PF13411 MerR HTH family regulatory protein llmg_2486 PF01451 Low molecular weight phosphotyrosine protein phosphatase llmg_2487 PF05491 Holliday junction DNA helicase ruvB C-terminus llmg_2487 PF05496 Holliday junction DNA helicase ruvB N-terminus llmg_2488 PF01330 RuvA N terminal domain llmg_2488 PF07499 RuvA, C-terminal domain llmg_2488 PF14520 Helix-hairpin-helix domain llmg_2489 PF01119 DNA mismatch repair protein, C-terminal domain llmg_2489 PF08676 MutL C terminal dimerisation domain llmg_2489 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase llmg_2491 PF00488 MutS domain V llmg_2491 PF01624 MutS domain I llmg_2491 PF05188 MutS domain II llmg_2491 PF05190 MutS family domain IV llmg_2491 PF05192 MutS domain III llmg_2492 PF06133 Protein of unknown function (DUF964) llmg_2493 PF00872 llmg_2493 llmg_2494 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase llmg_2494 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase llmg_2496 PF07843 llmg_2496 llmg_2497 PF01925 llmg_2497 llmg_2499 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain llmg_2499 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain llmg_2500 PF13419 Haloacid dehalogenase-like hydrolase llmg_2502 PF00226 DnaJ domain llmg_2502 PF00684 DnaJ central domain llmg_2502 PF01556 DnaJ C terminal domain llmg_2504 PF01177 Asp/Glu/Hydantoin racemase llmg_2506 PF00733 Asparagine synthase llmg_2506 PF13537 Glutamine amidotransferase domain llmg_2507 PF05257 CHAP domain llmg_2508 PF04093 llmg_2508 llmg_2509 PF04085 rod shape-determining protein MreC llmg_2510 PF00293 NUDIX domain llmg_2511 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) llmg_2512 PF13545 Crp-like helix-turn-helix domain llmg_2513 PF07690 Major Facilitator Superfamily llmg_2514 PF00582 Universal stress protein family llmg_2516 PF01869 BadF/BadG/BcrA/BcrD ATPase family llmg_2516 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component llmg_2516 PF09989 llmg_2516 llmg_2517 PF00440 Bacterial regulatory proteins, tetR family llmg_2517 PF14278 llmg_2517 llmg_2518 PF00849 RNA pseudouridylate synthase llmg_2518 PF01479 S4 domain llmg_2521 PF01926 50S ribosome-binding GTPase llmg_2521 PF10396 GTP-binding protein TrmE N-terminus llmg_2521 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE llmg_2523 PF00270 DEAD/DEAH box helicase llmg_2523 PF00271 Helicase conserved C-terminal domain llmg_2523 PF17191 llmg_2523 llmg_2524 PF03831 PhnA protein llmg_2525 PF00589 Phage integrase family llmg_2525 PF14659 Phage integrase, N-terminal SAM-like domain llmg_2526 PF13443 Cro/C1-type HTH DNA-binding domain llmg_2533 PF08708 Primase C terminal 1 (PriCT-1) llmg_2533 PF09250 Bifunctional DNA primase/polymerase, N-terminal llmg_2534 PF03288 Poxvirus D5 protein-like llmg_2534 PF08706 llmg_2534 llmg_2537 PF05263 llmg_2537 llmg_2538 PF04545 Sigma-70, region 4 llmg_2539 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain llmg_2539 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain llmg_2540 PF04394 llmg_2540 llmg_2541 PF00122 E1-E2 ATPase llmg_2541 PF00689 Cation transporting ATPase, C-terminus llmg_2541 PF00690 Cation transporter/ATPase, N-terminus llmg_2541 PF00702 haloacid dehalogenase-like hydrolase llmg_2542 PF00440 Bacterial regulatory proteins, tetR family llmg_2543 PF00106 short chain dehydrogenase llmg_2545 PF00380 Ribosomal protein S9/S16 llmg_2546 PF00572 Ribosomal protein L13 llmg_2548 PF00005 ABC transporter llmg_2549 PF01351 Ribonuclease HII llmg_2549 PF11858 Domain of unknown function (DUF3378) llmg_2550 PF00717 Peptidase S24-like llmg_2551 PF00156 Phosphoribosyl transferase domain llmg_2551 PF09182 Bacterial purine repressor, N-terminal llmg_2556 PF00009 Elongation factor Tu GTP binding domain llmg_2556 PF00679 Elongation factor G C-terminus llmg_2556 PF03144 Elongation factor Tu domain 2 llmg_2556 PF03764 Elongation factor G, domain IV llmg_2556 PF14492 Elongation Factor G, domain II llmg_2557 PF00177 Ribosomal protein S7p/S5e llmg_2558 PF00164 Ribosomal protein S12/S23 llmg_2560 PF00768 D-alanyl-D-alanine carboxypeptidase llmg_2560 PF07943 Penicillin-binding protein 5, C-terminal domain llmg_2561 PF06800 llmg_2561 llmg_2562 PF06962 Putative rRNA methylase llmg_2563 PF04055 Radical SAM superfamily llmg_2563 PF16199 llmg_2563