locus-tag class description lpp0001 PF00308 Bacterial dnaA protein lpp0001 PF11638 DnaA N-terminal domain lpp0001 PF08299 Bacterial dnaA protein helix-turn-helix lpp0002 PF02768 DNA polymerase III beta subunit, C-terminal domain lpp0002 PF02767 DNA polymerase III beta subunit, central domain lpp0002 PF00712 DNA polymerase III beta subunit, N-terminal domain lpp0003 PF02463 RecF/RecN/SMC N terminal domain lpp0004 PF01751 Toprim domain lpp0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase lpp0004 PF18053 DNA gyrase B subunit insert domain lpp0004 PF00986 DNA gyrase B subunit, carboxyl terminus lpp0004 PF00204 DNA gyrase B lpp0005 PF04371 Porphyromonas-type peptidyl-arginine deiminase lpp0006 PF17810 Arginine decarboxylase helical bundle domain lpp0006 PF17944 Arginine decarboxylase C-terminal helical extension lpp0006 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain lpp0009 PF17209 Hfq protein lpp0010 PF13167 GTP-binding GTPase N-terminal lpp0010 PF16360 GTP-binding GTPase Middle Region lpp0010 PF01926 50S ribosome-binding GTPase lpp0013 PF02678 Pirin lpp0013 PF05726 Pirin C-terminal cupin domain lpp0015 PF00529 HlyD membrane-fusion protein of T1SS lpp0015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion lpp0019 PF07504 Fungalysin/Thermolysin Propeptide Motif lpp0019 PF03413 Peptidase propeptide and YPEB domain lpp0019 PF01447 Thermolysin metallopeptidase, catalytic domain lpp0019 PF02868 Thermolysin metallopeptidase, alpha-helical domain lpp0019 PF04151 Bacterial pre-peptidase C-terminal domain lpp0021 PF04751 Protein of unknown function (DUF615) lpp0022 PF10672 S-adenosylmethionine-dependent methyltransferase lpp0022 PF01170 Putative RNA methylase family UPF0020 lpp0025 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP lpp0026 PF13520 Amino acid permease lpp0027 PF01384 Phosphate transporter family lpp0028 PF03232 Ubiquinone biosynthesis protein COQ7 lpp0029 PF03707 Bacterial signalling protein N terminal repeat lpp0029 PF00990 Diguanylate cyclase, GGDEF domain lpp0029 PF00563 EAL domain lpp0031 PF04389 Peptidase family M28 lpp0031 PF02225 PA domain lpp0033 PF02392 Ycf4 lpp0035 PF10677 Protein of unknown function (DUF2490) lpp0039 PF01541 GIY-YIG catalytic domain lpp0043 PF01062 Bestrophin, RFP-TM, chloride channel lpp0048 PF00132 Bacterial transferase hexapeptide (six repeats) lpp0050 PF13520 Amino acid permease lpp0057 PF03466 LysR substrate binding domain lpp0057 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family lpp0060 PF09278 MerR, DNA binding lpp0060 PF00376 MerR family regulatory protein lpp0061 PF00462 Glutaredoxin lpp0064 PF07804 HipA-like C-terminal domain lpp0064 PF13657 HipA N-terminal domain lpp0065 PF01381 Helix-turn-helix lpp0072 PF00589 Phage integrase family lpp0072 PF13356 Arm DNA-binding domain lpp0077 PF00873 AcrB/AcrD/AcrF family lpp0078 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion lpp0079 PF02321 Outer membrane efflux protein lpp0083 PF01609 Transposase DDE domain lpp0086 PF00271 Helicase conserved C-terminal domain lpp0086 PF04851 Type III restriction enzyme, res subunit lpp0086 PF02151 UvrB/uvrC motif lpp0086 PF12344 Ultra-violet resistance protein B lpp0086 PF17757 UvrB interaction domain lpp0087 PF00563 EAL domain lpp0087 PF01590 GAF domain lpp0087 PF00990 Diguanylate cyclase, GGDEF domain lpp0087 PF00360 Phytochrome region lpp0088 PF01645 Conserved region in glutamate synthase lpp0089 PF05164 Cell division protein ZapA lpp0090 PF03695 Uncharacterised protein family (UPF0149) lpp0091 PF00557 Metallopeptidase family M24 lpp0091 PF05195 Aminopeptidase P, N-terminal domain lpp0092 PF01494 FAD binding domain lpp0093 PF01494 FAD binding domain lpp0099 PF18030 RimK PreATP-grasp domain lpp0099 PF08443 RimK-like ATP-grasp domain lpp0103 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 lpp0106 PF00575 S1 RNA binding domain lpp0106 PF00773 RNB domain lpp0106 PF08206 Ribonuclease B OB domain lpp0106 PF08461 Ribonuclease R winged-helix domain lpp0106 PF17876 Cold shock domain lpp0107 PF00588 SpoU rRNA Methylase family lpp0107 PF08032 RNA 2'-O ribose methyltransferase substrate binding lpp0108 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) lpp0113 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain lpp0113 PF00476 DNA polymerase family A lpp0113 PF01612 3'-5' exonuclease lpp0113 PF01367 5'-3' exonuclease, C-terminal SAM fold lpp0114 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD lpp0114 PF00132 Bacterial transferase hexapeptide (six repeats) lpp0116 PF02801 Beta-ketoacyl synthase, C-terminal domain lpp0116 PF00109 Beta-ketoacyl synthase, N-terminal domain lpp0118 PF01625 Peptide methionine sulfoxide reductase lpp0120 PF00860 Permease family lpp0127 PF08668 HDOD domain lpp0127 PF00563 EAL domain lpp0128 PF02347 Glycine cleavage system P-protein lpp0130 PF02347 Glycine cleavage system P-protein lpp0131 PF01597 Glycine cleavage H-protein lpp0136 PF00005 ABC transporter lpp0138 PF00034 Cytochrome c lpp0139 PF01926 50S ribosome-binding GTPase lpp0141 PF00501 AMP-binding enzyme lpp0141 PF13193 AMP-binding enzyme C-terminal domain lpp0141 PF16177 Acetyl-coenzyme A synthetase N-terminus lpp0142 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase lpp0142 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase lpp0143 PF00171 Aldehyde dehydrogenase family lpp0144 PF07311 Dodecin lpp0146 PF01113 Dihydrodipicolinate reductase, N-terminus lpp0146 PF05173 Dihydrodipicolinate reductase, C-terminus lpp0151 PF02887 Pyruvate kinase, alpha/beta domain lpp0151 PF00224 Pyruvate kinase, barrel domain lpp0152 PF00162 Phosphoglycerate kinase lpp0153 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain lpp0153 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain lpp0154 PF02779 Transketolase, pyrimidine binding domain lpp0154 PF02780 Transketolase, C-terminal domain lpp0154 PF00456 Transketolase, thiamine diphosphate binding domain lpp0156 PF01432 Peptidase family M3 lpp0161 PF01867 CRISPR associated protein Cas1 lpp0163 PF01930 Domain of unknown function DUF83 lpp0168 PF02599 Global regulator protein family lpp0171 PF03135 CagE, TrbE, VirB family, component of type IV transporter system lpp0178 PF03743 Bacterial conjugation TrbI-like protein lpp0179 PF00437 Type II/IV secretion system protein lpp0180 PF02534 Type IV secretory system Conjugative DNA transfer lpp0183 PF17841 BID domain of Bartonella effector protein (Bep) lpp0183 PF03389 MobA/MobL family lpp0183 PF01443 Viral (Superfamily 1) RNA helicase lpp0185 PF06412 Conjugal transfer protein TraD lpp0187 PF00753 Metallo-beta-lactamase superfamily lpp0187 PF12706 Beta-lactamase superfamily domain lpp0194 PF00589 Phage integrase family lpp0194 PF12167 Arm DNA-binding domain lpp0197 PF01555 DNA methylase lpp0199 PF01527 Transposase lpp0219 PF13426 PAS domain lpp0219 PF00990 Diguanylate cyclase, GGDEF domain lpp0219 PF00563 EAL domain lpp0220 PF12792 CSS motif domain associated with EAL lpp0220 PF00563 EAL domain lpp0228 PF05661 Protein of unknown function (DUF808) lpp0229 PF03462 PCRF domain lpp0229 PF00472 RF-1 domain lpp0238 PF01494 FAD binding domain lpp0239 PF07690 Major Facilitator Superfamily lpp0240 PF02655 ATP-grasp domain lpp0240 PF00206 Lyase lpp0242 PF01209 ubiE/COQ5 methyltransferase family lpp0244 PF01435 Peptidase family M48 lpp0248 PF07687 Peptidase dimerisation domain lpp0248 PF01546 Peptidase family M20/M25/M40 lpp0249 PF02515 CoA-transferase family III lpp0255 PF01906 Putative heavy-metal-binding lpp0259 PF01654 Cytochrome bd terminal oxidase subunit I lpp0260 PF02322 Cytochrome bd terminal oxidase subunit II lpp0263 PF02645 Uncharacterised protein, DegV family COG1307 lpp0267 PF00069 Protein kinase domain lpp0267 PF03793 PASTA domain lpp0271 PF00875 DNA photolyase lpp0271 PF03441 FAD binding domain of DNA photolyase lpp0272 PF04172 LrgB-like family lpp0273 PF03788 LrgA family lpp0274 PF03466 LysR substrate binding domain lpp0274 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family lpp0275 PF03884 DNA gyrase inhibitor YacG lpp0276 PF02222 ATP-grasp domain lpp0276 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain lpp0277 PF00731 AIR carboxylase lpp0280 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) lpp0281 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus lpp0281 PF00361 Proton-conducting membrane transporter lpp0282 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family lpp0282 PF03466 LysR substrate binding domain lpp0283 PF00664 ABC transporter transmembrane region lpp0283 PF00005 ABC transporter lpp0283 PF03412 Peptidase C39 family lpp0287 PF13520 Amino acid permease lpp0292 PF00083 Sugar (and other) transporter lpp0292 PF08946 Osmosensory transporter coiled coil lpp0294 PF00116 Cytochrome C oxidase subunit II, periplasmic domain lpp0294 PF06481 COX Aromatic Rich Motif lpp0295 PF00115 Cytochrome C and Quinol oxidase polypeptide I lpp0296 PF00510 Cytochrome c oxidase subunit III lpp0297 PF03626 Prokaryotic Cytochrome C oxidase subunit IV lpp0299 PF17158 Membrane-associated sensor, integral membrane domain lpp0299 PF00990 Diguanylate cyclase, GGDEF domain lpp0302 PF01475 Ferric uptake regulator family lpp0304 PF12252 Dot/Icm substrate protein lpp0309 PF00202 Aminotransferase class-III lpp0311 PF04960 Glutaminase lpp0312 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain lpp0312 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain lpp0312 PF01842 ACT domain lpp0315 PF05088 Bacterial NAD-glutamate dehydrogenase lpp0318 PF03960 ArsC family lpp0320 PF00271 Helicase conserved C-terminal domain lpp0320 PF00270 DEAD/DEAH box helicase lpp0322 PF02592 Putative vitamin uptake transporter lpp0325 PF02321 Outer membrane efflux protein lpp0327 PF13533 Biotin-lipoyl like lpp0331 PF01541 GIY-YIG catalytic domain lpp0333 PF03167 Uracil DNA glycosylase superfamily lpp0339 PF00394 Multicopper oxidase lpp0339 PF07731 Multicopper oxidase lpp0339 PF07732 Multicopper oxidase lpp0341 PF01544 CorA-like Mg2+ transporter protein lpp0343 PF05872 Bacterial protein of unknown function (DUF853) lpp0344 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain lpp0344 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain lpp0344 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family lpp0345 PF00857 Isochorismatase family lpp0347 PF07690 Major Facilitator Superfamily lpp0348 PF03466 LysR substrate binding domain lpp0348 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family lpp0351 PF00563 EAL domain lpp0351 PF00990 Diguanylate cyclase, GGDEF domain lpp0351 PF03707 Bacterial signalling protein N terminal repeat lpp0352 PF00990 Diguanylate cyclase, GGDEF domain lpp0352 PF03707 Bacterial signalling protein N terminal repeat lpp0352 PF00563 EAL domain lpp0353 PF00512 His Kinase A (phospho-acceptor) domain lpp0353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase lpp0355 PF03466 LysR substrate binding domain lpp0355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family lpp0357 PF13520 Amino acid permease lpp0358 PF01209 ubiE/COQ5 methyltransferase family lpp0359 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain lpp0359 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain lpp0362 PF00106 short chain dehydrogenase lpp0365 PF09285 Elongation factor P, C-terminal lpp0365 PF01132 Elongation factor P (EF-P) OB domain lpp0365 PF08207 Elongation factor P (EF-P) KOW-like domain lpp0366 PF04055 Radical SAM superfamily lpp0367 PF02503 Polyphosphate kinase middle domain lpp0367 PF13090 Polyphosphate kinase C-terminal domain 2 lpp0367 PF13089 Polyphosphate kinase N-terminal domain lpp0367 PF17941 Polyphosphate kinase C-terminal domain 1 lpp0371 PF00441 Acyl-CoA dehydrogenase, C-terminal domain lpp0371 PF02770 Acyl-CoA dehydrogenase, middle domain lpp0371 PF02771 Acyl-CoA dehydrogenase, N-terminal domain lpp0371 PF09317 Domain of unknown function (DUF1974) lpp0373 PF00483 Nucleotidyl transferase lpp0374 PF01636 Phosphotransferase enzyme family lpp0375 PF03968 OstA-like protein lpp0375 PF04453 LPS transport system D lpp0376 PF09312 SurA N-terminal domain lpp0376 PF00639 PPIC-type PPIASE domain lpp0377 PF04166 Pyridoxal phosphate biosynthetic protein PdxA lpp0378 PF00186 Dihydrofolate reductase lpp0381 PF00584 SecE/Sec61-gamma subunits of protein translocation complex lpp0382 PF02357 Transcription termination factor nusG lpp0382 PF00467 KOW motif lpp0383 PF00298 Ribosomal protein L11, RNA binding domain lpp0383 PF03946 Ribosomal protein L11, N-terminal domain lpp0384 PF00687 Ribosomal protein L1p/L10e family lpp0388 PF04983 RNA polymerase Rpb1, domain 3 lpp0388 PF04997 RNA polymerase Rpb1, domain 1 lpp0388 PF00623 RNA polymerase Rpb1, domain 2 lpp0388 PF04998 RNA polymerase Rpb1, domain 5 lpp0388 PF05000 RNA polymerase Rpb1, domain 4 lpp0390 PF00177 Ribosomal protein S7p/S5e lpp0391 PF03144 Elongation factor Tu domain 2 lpp0391 PF00009 Elongation factor Tu GTP binding domain lpp0391 PF03764 Elongation factor G, domain IV lpp0391 PF00679 Elongation factor G C-terminus lpp0391 PF14492 Elongation Factor G, domain II lpp0393 PF00338 Ribosomal protein S10p/S20e lpp0394 PF00297 Ribosomal protein L3 lpp0395 PF00573 Ribosomal protein L4/L1 family lpp0396 PF00276 Ribosomal protein L23 lpp0397 PF03947 Ribosomal Proteins L2, C-terminal domain lpp0397 PF00181 Ribosomal Proteins L2, RNA binding domain lpp0398 PF00203 Ribosomal protein S19 lpp0399 PF00237 Ribosomal protein L22p/L17e lpp0400 PF00189 Ribosomal protein S3, C-terminal domain lpp0400 PF07650 KH domain lpp0401 PF00252 Ribosomal protein L16p/L10e lpp0402 PF00831 Ribosomal L29 protein lpp0403 PF00366 Ribosomal protein S17 lpp0404 PF00238 Ribosomal protein L14p/L23e lpp0405 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 lpp0406 PF00673 ribosomal L5P family C-terminus lpp0406 PF00281 Ribosomal protein L5 lpp0408 PF00410 Ribosomal protein S8 lpp0409 PF00347 Ribosomal protein L6 lpp0410 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast lpp0411 PF00333 Ribosomal protein S5, N-terminal domain lpp0411 PF03719 Ribosomal protein S5, C-terminal domain lpp0412 PF00327 Ribosomal protein L30p/L7e lpp0413 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A lpp0414 PF00344 SecY translocase lpp0415 PF00444 Ribosomal protein L36 lpp0416 PF00416 Ribosomal protein S13/S18 lpp0417 PF00411 Ribosomal protein S11 lpp0422 PF07690 Major Facilitator Superfamily lpp0424 PF00550 Phosphopantetheine attachment site lpp0425 PF07977 FabA-like domain lpp0426 PF00109 Beta-ketoacyl synthase, N-terminal domain lpp0426 PF02801 Beta-ketoacyl synthase, C-terminal domain lpp0428 PF03279 Bacterial lipid A biosynthesis acyltransferase lpp0431 PF01678 Diaminopimelate epimerase lpp0432 PF13627 Prokaryotic lipoprotein-attachment site lpp0434 PF02230 Phospholipase/Carboxylesterase lpp0435 PF03364 Polyketide cyclase / dehydrase and lipid transport lpp0440 PF13185 GAF domain lpp0440 PF00990 Diguanylate cyclase, GGDEF domain lpp0451 PF17760 UvrA interaction domain lpp0451 PF17755 UvrA DNA-binding domain lpp0452 PF04011 LemA family lpp0453 PF01435 Peptidase family M48 lpp0454 PF01061 ABC-2 type transporter lpp0455 PF00005 ABC transporter lpp0463 PF01245 Ribosomal protein L19 lpp0464 PF01746 tRNA (Guanine-1)-methyltransferase lpp0465 PF01782 RimM N-terminal domain lpp0465 PF05239 PRC-barrel domain lpp0466 PF00886 Ribosomal protein S16 lpp0467 PF02978 Signal peptide binding domain lpp0467 PF02881 SRP54-type protein, helical bundle domain lpp0467 PF00448 SRP54-type protein, GTPase domain lpp0470 PF13520 Amino acid permease lpp0474 PF02600 Disulfide bond formation protein DsbB lpp0478 PF02628 Cytochrome oxidase assembly protein lpp0479 PF01040 UbiA prenyltransferase family lpp0480 PF02630 SCO1/SenC lpp0483 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain lpp0483 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain lpp0484 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase lpp0485 PF00920 Dehydratase family lpp0487 PF01081 KDPG and KHG aldolase lpp0492 PF00762 Ferrochelatase lpp0496 PF02321 Outer membrane efflux protein lpp0497 PF00529 HlyD membrane-fusion protein of T1SS lpp0497 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion lpp0512 PF01580 FtsK/SpoIIIE family lpp0523 PF00083 Sugar (and other) transporter lpp0526 PF01808 AICARFT/IMPCHase bienzyme lpp0526 PF02142 MGS-like domain lpp0528 PF02785 Biotin carboxylase C-terminal domain lpp0528 PF00289 Biotin carboxylase, N-terminal domain lpp0528 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain lpp0529 PF00364 Biotin-requiring enzyme lpp0530 PF01220 Dehydroquinase class II lpp0533 PF00364 Biotin-requiring enzyme lpp0533 PF00561 alpha/beta hydrolase fold lpp0534 PF03372 Endonuclease/Exonuclease/phosphatase family lpp0535 PF00274 Fructose-bisphosphate aldolase class-I lpp0536 PF00970 Oxidoreductase FAD-binding domain lpp0536 PF00111 2Fe-2S iron-sulfur cluster binding domain lpp0536 PF00175 Oxidoreductase NAD-binding domain lpp0539 PF01066 CDP-alcohol phosphatidyltransferase lpp0540 PF00381 PTS HPr component phosphorylation site lpp0542 PF00309 Sigma-54 factor, Activator interacting domain (AID) lpp0542 PF04552 Sigma-54, DNA binding domain lpp0542 PF04963 Sigma-54 factor, core binding domain lpp0544 PF00830 Ribosomal L28 family lpp0545 PF02390 Putative methyltransferase lpp0546 PF05343 M42 glutamyl aminopeptidase lpp0548 PF12221 Bacterial membrane protein N terminal lpp0548 PF01145 SPFH domain / Band 7 family lpp0549 PF01145 SPFH domain / Band 7 family lpp0550 PF00709 Adenylosuccinate synthetase lpp0553 PF00497 Bacterial extracellular solute-binding proteins, family 3 lpp0554 PF00528 Binding-protein-dependent transport system inner membrane component lpp0555 PF00005 ABC transporter lpp0556 PF00764 Arginosuccinate synthase lpp0557 PF00206 Lyase lpp0557 PF14698 Argininosuccinate lyase C-terminal lpp0558 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain lpp0558 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain lpp0562 PF01551 Peptidase family M23 lpp0563 PF06415 BPG-independent PGAM N-terminus (iPGM_N) lpp0563 PF01676 Metalloenzyme superfamily lpp0566 PF01255 Putative undecaprenyl diphosphate synthase lpp0568 PF02163 Peptidase family M50 lpp0568 PF17820 PDZ domain lpp0571 PF00132 Bacterial transferase hexapeptide (six repeats) lpp0571 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD lpp0572 PF07977 FabA-like domain lpp0573 PF00132 Bacterial transferase hexapeptide (six repeats) lpp0573 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 lpp0574 PF02537 CrcB-like protein, Camphor Resistance (CrcB) lpp0575 PF02403 Seryl-tRNA synthetase N-terminal domain lpp0575 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) lpp0588 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily lpp0593 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit lpp0594 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit lpp0595 PF00890 FAD binding domain lpp0595 PF02910 Fumarate reductase flavoprotein C-term lpp0596 PF13085 2Fe-2S iron-sulfur cluster binding domain lpp0599 PF00549 CoA-ligase lpp0599 PF08442 ATP-grasp domain lpp0600 PF00549 CoA-ligase lpp0600 PF02629 CoA binding domain lpp0601 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region lpp0601 PF01243 Pyridoxamine 5'-phosphate oxidase lpp0609 PF01467 Cytidylyltransferase-like lpp0613 PF00893 Small Multidrug Resistance protein lpp0614 PF11798 IMS family HHH motif lpp0614 PF11799 impB/mucB/samB family C-terminal domain lpp0614 PF00817 impB/mucB/samB family lpp0616 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain lpp0616 PF06827 Zinc finger found in FPG and IleRS lpp0616 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain lpp0621 PF00106 short chain dehydrogenase lpp0622 PF05233 PHB accumulation regulatory domain lpp0622 PF07879 PHB/PHA accumulation regulator DNA-binding domain lpp0625 PF07670 Nucleoside recognition lpp0626 PF07670 Nucleoside recognition lpp0627 PF04225 Opacity-associated protein A LysM-like domain lpp0627 PF01551 Peptidase family M23 lpp0628 PF00579 tRNA synthetases class I (W and Y) lpp0629 PF00132 Bacterial transferase hexapeptide (six repeats) lpp0630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain lpp0630 PF07992 Pyridine nucleotide-disulphide oxidoreductase lpp0631 PF00962 Adenosine/AMP deaminase lpp0633 PF01384 Phosphate transporter family lpp0634 PF01865 Protein of unknown function DUF47 lpp0636 PF02622 Uncharacterized ACR, COG1678 lpp0637 PF03652 Holliday junction resolvase lpp0638 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain lpp0638 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain lpp0640 PF13335 Magnesium chelatase, subunit ChlI C-terminal lpp0640 PF01078 Magnesium chelatase, subunit ChlI lpp0641 PF04380 Membrane fusogenic activity lpp0642 PF00543 Nitrogen regulatory protein P-II lpp0643 PF01812 5-formyltetrahydrofolate cyclo-ligase family lpp0645 PF01063 Amino-transferase class IV lpp0650 PF00561 alpha/beta hydrolase fold lpp0650 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus lpp0652 PF01458 Uncharacterized protein family (UPF0051) lpp0653 PF00005 ABC transporter lpp0654 PF01458 Uncharacterized protein family (UPF0051) lpp0655 PF00266 Aminotransferase class-V lpp0656 PF01592 NifU-like N terminal domain lpp0657 PF01883 Iron-sulfur cluster assembly protein lpp0658 PF00152 tRNA synthetases class II (D, K and N) lpp0659 PF18125 RlmM ferredoxin-like domain lpp0659 PF01728 FtsJ-like methyltransferase lpp0662 PF03471 Transporter associated domain lpp0662 PF01595 Cyclin M transmembrane N-terminal domain lpp0662 PF00571 CBS domain lpp0663 PF08240 Alcohol dehydrogenase GroES-like domain lpp0663 PF00107 Zinc-binding dehydrogenase lpp0666 PF01327 Polypeptide deformylase lpp0670 PF14489 QueF-like protein lpp0670 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term lpp0672 PF03352 Methyladenine glycosylase lpp0672 PF13673 Acetyltransferase (GNAT) domain lpp0672 PF13302 Acetyltransferase (GNAT) domain lpp0672 PF00958 GMP synthase C terminal domain lpp0672 PF00117 Glutamine amidotransferase class-I lpp0680 PF03772 Competence protein lpp0680 PF00753 Metallo-beta-lactamase superfamily lpp0682 PF05567 Neisseria PilC beta-propeller domain lpp0689 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase lpp0691 PF07690 Major Facilitator Superfamily lpp0693 PF01676 Metalloenzyme superfamily lpp0694 PF00227 Proteasome subunit lpp0695 PF07724 AAA domain (Cdc48 subfamily) lpp0695 PF00004 ATPase family associated with various cellular activities (AAA) lpp0698 PF03631 Virulence factor BrkB lpp0700 PF03358 NADPH-dependent FMN reductase lpp0701 PF04480 Protein of unknown function (DUF559) lpp0702 PF03372 Endonuclease/Exonuclease/phosphatase family lpp0703 PF03372 Endonuclease/Exonuclease/phosphatase family lpp0705 PF03949 Malic enzyme, NAD binding domain lpp0705 PF00390 Malic enzyme, N-terminal domain lpp0708 PF02086 D12 class N6 adenine-specific DNA methyltransferase lpp0710 PF03222 Tryptophan/tyrosine permease family lpp0713 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion lpp0714 PF00005 ABC transporter lpp0719 PF02321 Outer membrane efflux protein lpp0721 PF00834 Ribulose-phosphate 3 epimerase family lpp0724 PF05114 Protein of unknown function (DUF692) lpp0727 PF07992 Pyridine nucleotide-disulphide oxidoreductase lpp0728 PF06314 Acetoacetate decarboxylase (ADC) lpp0730 PF00072 Response regulator receiver domain lpp0730 PF00211 Adenylate and Guanylate cyclase catalytic domain lpp0732 PF05114 Protein of unknown function (DUF692) lpp0735 PF03710 Glutamate-ammonia ligase adenylyltransferase lpp0735 PF08335 GlnD PII-uridylyltransferase lpp0738 PF00005 ABC transporter lpp0740 PF04055 Radical SAM superfamily lpp0740 PF00919 Uncharacterized protein family UPF0004 lpp0740 PF18693 TRAM domain lpp0741 PF11412 Disulphide bond corrector protein DsbC lpp0741 PF02683 Cytochrome C biogenesis protein transmembrane region lpp0744 PF00210 Ferritin-like domain lpp0746 PF00204 DNA gyrase B lpp0746 PF00986 DNA gyrase B subunit, carboxyl terminus lpp0746 PF01751 Toprim domain lpp0746 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase lpp0747 PF08352 Oligopeptide/dipeptide transporter, C-terminal region lpp0747 PF00005 ABC transporter lpp0749 PF04073 Aminoacyl-tRNA editing domain lpp0749 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) lpp0749 PF03129 Anticodon binding domain lpp0750 PF12796 Ankyrin repeats (3 copies) lpp0750 PF02661 Fic/DOC family lpp0753 PF01171 PP-loop family lpp0754 PF02321 Outer membrane efflux protein lpp0758 PF12848 ABC transporter lpp0758 PF00005 ABC transporter lpp0760 PF04143 Sulphur transport lpp0764 PF00491 Arginase family lpp0766 PF01979 Amidohydrolase family lpp0768 PF03169 OPT oligopeptide transporter protein lpp0771 PF13340 Putative transposase of IS4/5 family (DUF4096) lpp0779 PF12951 Passenger-associated-transport-repeat lpp0779 PF12951 Passenger-associated-transport-repeat lpp0781 PF00486 Transcriptional regulatory protein, C terminal lpp0781 PF00072 Response regulator receiver domain lpp0785 PF08264 Anticodon-binding domain of tRNA lpp0785 PF00133 tRNA synthetases class I (I, L, M and V) lpp0785 PF10458 Valyl tRNA synthetase tRNA binding arm lpp0786 PF00873 AcrB/AcrD/AcrF family lpp0791 PF00464 Serine hydroxymethyltransferase lpp0792 PF03477 ATP cone domain lpp0793 PF01029 NusB family lpp0794 PF00586 AIR synthase related protein, N-terminal domain lpp0794 PF02769 AIR synthase related protein, C-terminal domain lpp0795 PF04608 Phosphatidylglycerophosphatase A lpp0796 PF01594 AI-2E family transporter lpp0801 PF00271 Helicase conserved C-terminal domain lpp0801 PF00176 SNF2 family N-terminal domain lpp0801 PF12419 SNF2 Helicase protein lpp0803 PF03796 DnaB-like helicase C terminal domain lpp0803 PF00772 DnaB-like helicase N terminal domain lpp0804 PF01168 Alanine racemase, N-terminal domain lpp0804 PF00842 Alanine racemase, C-terminal domain lpp0809 PF00990 Diguanylate cyclase, GGDEF domain lpp0810 PF04055 Radical SAM superfamily lpp0811 PF01541 GIY-YIG catalytic domain lpp0812 PF00854 POT family lpp0815 PF00977 Histidine biosynthesis protein lpp0816 PF00117 Glutamine amidotransferase class-I lpp0817 PF02348 Cytidylyltransferase lpp0818 PF08666 SAF domain lpp0818 PF03102 NeuB family lpp0819 PF02350 UDP-N-acetylglucosamine 2-epimerase lpp0821 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family lpp0822 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase lpp0823 PF04321 RmlD substrate binding domain lpp0824 PF16363 GDP-mannose 4,6 dehydratase lpp0825 PF00342 Phosphoglucose isomerase lpp0826 PF00483 Nucleotidyl transferase lpp0827 PF01370 NAD dependent epimerase/dehydratase family lpp0828 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 lpp0828 PF00953 Glycosyl transferase family 4 lpp0838 PF14524 Wzt C-terminal domain lpp0838 PF00005 ABC transporter lpp0844 PF00753 Metallo-beta-lactamase superfamily lpp0844 PF16123 Hydroxyacylglutathione hydrolase C-terminus lpp0845 PF02599 Global regulator protein family lpp0846 PF01757 Acyltransferase family lpp0847 PF02237 Biotin protein ligase C terminal domain lpp0847 PF03099 Biotin/lipoate A/B protein ligase family lpp0847 PF08279 HTH domain lpp0848 PF01648 4'-phosphopantetheinyl transferase superfamily lpp0849 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit lpp0850 PF01171 PP-loop family lpp0850 PF09179 TilS substrate binding domain lpp0850 PF11734 TilS substrate C-terminal domain lpp0853 PF03062 MBOAT, membrane-bound O-acyltransferase family lpp0854 PF03313 Serine dehydratase alpha chain lpp0854 PF03315 Serine dehydratase beta chain lpp0855 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase lpp0855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase lpp0856 PF07690 Major Facilitator Superfamily lpp0857 PF01527 Transposase lpp0862 PF00890 FAD binding domain lpp0862 PF02910 Fumarate reductase flavoprotein C-term lpp0863 PF08328 Adenylosuccinate lyase C-terminal lpp0863 PF00206 Lyase lpp0864 PF01740 STAS domain lpp0864 PF00916 Sulfate permease family lpp0865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain lpp0865 PF18158 Adaptive response protein AidB N-terminal domain lpp0865 PF02770 Acyl-CoA dehydrogenase, middle domain lpp0867 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain lpp0867 PF00391 PEP-utilising enzyme, mobile domain lpp0867 PF02896 PEP-utilising enzyme, TIM barrel domain lpp0868 PF00999 Sodium/hydrogen exchanger family lpp0869 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain lpp0869 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain lpp0870 PF03033 Glycosyltransferase family 28 N-terminal domain lpp0870 PF04101 Glycosyltransferase family 28 C-terminal domain lpp0871 PF01546 Peptidase family M20/M25/M40 lpp0871 PF07687 Peptidase dimerisation domain lpp0874 PF04085 rod shape-determining protein MreC lpp0875 PF04093 rod shape-determining protein MreD lpp0876 PF00849 RNA pseudouridylate synthase lpp0879 PF02617 ATP-dependent Clp protease adaptor protein ClpS lpp0882 PF01541 GIY-YIG catalytic domain lpp0883 PF00535 Glycosyl transferase family 2 lpp0886 PF01694 Rhomboid family lpp0887 PF04225 Opacity-associated protein A LysM-like domain lpp0887 PF01551 Peptidase family M23 lpp0888 PF02601 Exonuclease VII, large subunit lpp0888 PF13742 OB-fold nucleic acid binding domain lpp0894 PF00106 short chain dehydrogenase lpp0895 PF00218 Indole-3-glycerol phosphate synthase lpp0896 PF02885 Glycosyl transferase family, helical bundle domain lpp0896 PF00591 Glycosyl transferase family, a/b domain lpp0897 PF00117 Glutamine amidotransferase class-I lpp0898 PF12399 Branched-chain amino acid ATP-binding cassette transporter lpp0898 PF00005 ABC transporter lpp0902 PF00571 CBS domain lpp0902 PF01380 SIS domain lpp0903 PF00005 ABC transporter lpp0904 PF02405 Permease MlaE lpp0905 PF02470 MlaD protein lpp0908 PF01722 BolA-like protein lpp0909 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) lpp0910 PF01784 NIF3 (NGG1p interacting factor 3) lpp0911 PF00005 ABC transporter lpp0912 PF12704 MacB-like periplasmic core domain lpp0912 PF02687 FtsX-like permease family lpp0913 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion lpp0915 PF02954 Bacterial regulatory protein, Fis family lpp0915 PF00072 Response regulator receiver domain lpp0915 PF00158 Sigma-54 interaction domain lpp0917 PF01343 Peptidase family S49 lpp0917 PF08496 Peptidase family S49 N-terminal lpp0918 PF00005 ABC transporter lpp0919 PF03379 CcmB protein lpp0920 PF01578 Cytochrome C assembly protein lpp0922 PF03100 CcmE lpp0923 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal lpp0923 PF01578 Cytochrome C assembly protein lpp0924 PF08534 Redoxin lpp0925 PF03918 Cytochrome C biogenesis protein lpp0927 PF07311 Dodecin lpp0929 PF02245 Methylpurine-DNA glycosylase (MPG) lpp0930 PF09382 RQC domain lpp0930 PF00270 DEAD/DEAH box helicase lpp0930 PF00271 Helicase conserved C-terminal domain lpp0930 PF00570 HRDC domain lpp0930 PF16124 RecQ zinc-binding lpp0931 PF00441 Acyl-CoA dehydrogenase, C-terminal domain lpp0931 PF02770 Acyl-CoA dehydrogenase, middle domain lpp0931 PF02771 Acyl-CoA dehydrogenase, N-terminal domain lpp0932 PF00378 Enoyl-CoA hydratase/isomerase lpp0933 PF00378 Enoyl-CoA hydratase/isomerase lpp0935 PF16658 Class II release factor RF3, C-terminal domain lpp0935 PF03144 Elongation factor Tu domain 2 lpp0935 PF00009 Elongation factor Tu GTP binding domain lpp0937 PF02233 NAD(P) transhydrogenase beta subunit lpp0938 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch lpp0939 PF05222 Alanine dehydrogenase/PNT, N-terminal domain lpp0939 PF01262 Alanine dehydrogenase/PNT, C-terminal domain lpp0942 PF00990 Diguanylate cyclase, GGDEF domain lpp0942 PF05230 MASE2 domain lpp0947 PF00375 Sodium:dicarboxylate symporter family lpp0948 PF07687 Peptidase dimerisation domain lpp0948 PF01546 Peptidase family M20/M25/M40 lpp0949 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal lpp0949 PF14602 Hexapeptide repeat of succinyl-transferase lpp0949 PF00132 Bacterial transferase hexapeptide (six repeats) lpp0951 PF01053 Cys/Met metabolism PLP-dependent enzyme lpp0952 PF00563 EAL domain lpp0952 PF00990 Diguanylate cyclase, GGDEF domain lpp0952 PF03707 Bacterial signalling protein N terminal repeat lpp0953 PF01494 FAD binding domain lpp0958 PF01699 Sodium/calcium exchanger protein lpp0960 PF00633 Helix-hairpin-helix motif lpp0960 PF14815 NUDIX domain lpp0960 PF00730 HhH-GPD superfamily base excision DNA repair protein lpp0960 PF10576 Iron-sulfur binding domain of endonuclease III lpp0965 PF13180 PDZ domain lpp0967 PF00106 short chain dehydrogenase lpp0970 PF13144 Chaperone for flagella basal body P-ring formation lpp0973 PF03309 Type III pantothenate kinase lpp0974 PF02381 MraZ protein, putative antitoxin-like lpp0975 PF01795 MraW methylase family lpp0977 PF00905 Penicillin binding protein transpeptidase domain lpp0977 PF03717 Penicillin-binding Protein dimerisation domain lpp0978 PF01225 Mur ligase family, catalytic domain lpp0978 PF08245 Mur ligase middle domain lpp0978 PF02875 Mur ligase family, glutamate ligase domain lpp0979 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain lpp0979 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain lpp0980 PF02163 Peptidase family M50 lpp0984 PF01012 Electron transfer flavoprotein domain lpp0985 PF01012 Electron transfer flavoprotein domain lpp0985 PF00766 Electron transfer flavoprotein FAD-binding domain lpp0986 PF01262 Alanine dehydrogenase/PNT, C-terminal domain lpp0986 PF05222 Alanine dehydrogenase/PNT, N-terminal domain lpp0987 PF17092 Penicillin-binding protein OB-like domain lpp0987 PF00905 Penicillin binding protein transpeptidase domain lpp0987 PF00912 Transglycosylase lpp0993 PF07660 Secretin and TonB N terminus short domain lpp0993 PF03958 Bacterial type II/III secretion system short domain lpp0993 PF00263 Bacterial type II and III secretion system protein lpp0993 PF11741 AMIN domain lpp0994 PF01202 Shikimate kinase lpp0995 PF01761 3-dehydroquinate synthase lpp0997 PF00582 Universal stress protein family lpp0998 PF01687 Riboflavin kinase lpp0998 PF06574 FAD synthetase lpp0999 PF06827 Zinc finger found in FPG and IleRS lpp0999 PF00133 tRNA synthetases class I (I, L, M and V) lpp0999 PF08264 Anticodon-binding domain of tRNA lpp1000 PF01252 Signal peptidase (SPase) II lpp1001 PF01081 KDPG and KHG aldolase lpp1004 PF01926 50S ribosome-binding GTPase lpp1004 PF07650 KH domain lpp1005 PF11967 Recombination protein O N terminal lpp1005 PF02565 Recombination protein O C terminal lpp1008 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ lpp1009 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg lpp1009 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II lpp1009 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase lpp1010 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain lpp1012 PF00795 Carbon-nitrogen hydrolase lpp1013 PF01523 Putative modulator of DNA gyrase lpp1015 PF00501 AMP-binding enzyme lpp1016 PF17757 UvrB interaction domain lpp1016 PF02559 CarD-like/TRCF domain lpp1016 PF00270 DEAD/DEAH box helicase lpp1016 PF00271 Helicase conserved C-terminal domain lpp1016 PF03461 TRCF domain lpp1020 PF03119 NAD-dependent DNA ligase C4 zinc finger domain lpp1020 PF12826 Helix-hairpin-helix motif lpp1020 PF01653 NAD-dependent DNA ligase adenylation domain lpp1020 PF00533 BRCA1 C Terminus (BRCT) domain lpp1020 PF03120 NAD-dependent DNA ligase OB-fold domain lpp1022 PF00528 Binding-protein-dependent transport system inner membrane component lpp1023 PF00528 Binding-protein-dependent transport system inner membrane component lpp1023 PF12911 N-terminal TM domain of oligopeptide transport permease C lpp1024 PF02811 PHP domain lpp1024 PF01336 OB-fold nucleic acid binding domain lpp1024 PF07733 Bacterial DNA polymerase III alpha NTPase domain lpp1024 PF14579 Helix-hairpin-helix motif lpp1024 PF17657 Bacterial DNA polymerase III alpha subunit finger domain lpp1026 PF01040 UbiA prenyltransferase family lpp1028 PF02719 Polysaccharide biosynthesis protein lpp1032 PF00324 Amino acid permease lpp1035 PF13542 Helix-turn-helix domain of transposase family ISL3 lpp1035 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 lpp1035 PF01610 Transposase lpp1038 PF02586 SOS response associated peptidase (SRAP) lpp1039 PF00717 Peptidase S24-like lpp1040 PF13438 Domain of unknown function (DUF4113) lpp1040 PF00817 impB/mucB/samB family lpp1040 PF11799 impB/mucB/samB family C-terminal domain lpp1045 PF00436 Single-strand binding protein family lpp1082 PF07690 Major Facilitator Superfamily lpp1083 PF01327 Polypeptide deformylase lpp1088 PF13356 Arm DNA-binding domain lpp1088 PF00589 Phage integrase family lpp1089 PF04229 GrpB protein lpp1091 PF02661 Fic/DOC family lpp1091 PF12728 Helix-turn-helix domain lpp1093 PF13419 Haloacid dehalogenase-like hydrolase lpp1104 PF01625 Peptide methionine sulfoxide reductase lpp1104 PF01641 SelR domain lpp1106 PF10011 Predicted membrane protein (DUF2254) lpp1114 PF00563 EAL domain lpp1114 PF00990 Diguanylate cyclase, GGDEF domain lpp1114 PF03707 Bacterial signalling protein N terminal repeat lpp1115 PF07689 KaiB domain lpp1117 PF00704 Glycosyl hydrolases family 18 lpp1117 PF00041 Fibronectin type III domain lpp1123 PF01464 Transglycosylase SLT domain lpp1123 PF01476 LysM domain lpp1126 PF00497 Bacterial extracellular solute-binding proteins, family 3 lpp1128 PF00501 AMP-binding enzyme lpp1128 PF13193 AMP-binding enzyme C-terminal domain lpp1129 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region lpp1131 PF00211 Adenylate and Guanylate cyclase catalytic domain lpp1135 PF03060 Nitronate monooxygenase lpp1140 PF13416 Bacterial extracellular solute-binding protein lpp1141 PF00528 Binding-protein-dependent transport system inner membrane component lpp1142 PF00528 Binding-protein-dependent transport system inner membrane component lpp1143 PF00005 ABC transporter lpp1143 PF08402 TOBE domain lpp1148 PF02074 Carboxypeptidase Taq (M32) metallopeptidase lpp1152 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain lpp1152 PF02805 Metal binding domain of Ada lpp1152 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain lpp1152 PF12833 Helix-turn-helix domain lpp1155 PF01593 Flavin containing amine oxidoreductase lpp1157 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain lpp1157 PF00205 Thiamine pyrophosphate enzyme, central domain lpp1157 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain lpp1161 PF00892 EamA-like transporter family lpp1163 PF05139 Erythromycin esterase lpp1163 PF00156 Phosphoribosyl transferase domain lpp1165 PF07690 Major Facilitator Superfamily lpp1166 PF01546 Peptidase family M20/M25/M40 lpp1166 PF07687 Peptidase dimerisation domain lpp1167 PF00485 Phosphoribulokinase / Uridine kinase family lpp1169 PF04461 Protein of unknown function (DUF520) lpp1170 PF00563 EAL domain lpp1170 PF03707 Bacterial signalling protein N terminal repeat lpp1170 PF00990 Diguanylate cyclase, GGDEF domain lpp1171 PF01875 Memo-like protein lpp1175 PF00512 His Kinase A (phospho-acceptor) domain lpp1175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase lpp1176 PF00158 Sigma-54 interaction domain lpp1176 PF00072 Response regulator receiver domain lpp1176 PF02954 Bacterial regulatory protein, Fis family lpp1179 PF01435 Peptidase family M48 lpp1180 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region lpp1180 PF01872 RibD C-terminal domain lpp1181 PF00677 Lumazine binding domain lpp1182 PF00925 GTP cyclohydrolase II lpp1182 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase lpp1183 PF00885 6,7-dimethyl-8-ribityllumazine synthase lpp1184 PF06418 CTP synthase N-terminus lpp1184 PF00117 Glutamine amidotransferase class-I lpp1185 PF00793 DAHP synthetase I family lpp1188 PF13525 Outer membrane lipoprotein lpp1190 PF02705 K+ potassium transporter lpp1192 PF10672 S-adenosylmethionine-dependent methyltransferase lpp1192 PF17785 PUA-like domain lpp1193 PF00933 Glycosyl hydrolase family 3 N terminal domain lpp1193 PF01915 Glycosyl hydrolase family 3 C-terminal domain lpp1194 PF01965 DJ-1/PfpI family lpp1195 PF01502 Phosphoribosyl-AMP cyclohydrolase lpp1195 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase lpp1196 PF00977 Histidine biosynthesis protein lpp1197 PF00977 Histidine biosynthesis protein lpp1198 PF00117 Glutamine amidotransferase class-I lpp1199 PF00475 Imidazoleglycerol-phosphate dehydratase lpp1200 PF00155 Aminotransferase class I and II lpp1202 PF08029 HisG, C-terminal domain lpp1202 PF01634 ATP phosphoribosyltransferase lpp1207 PF00313 'Cold-shock' DNA-binding domain lpp1209 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) lpp1209 PF03129 Anticodon binding domain lpp1209 PF04073 Aminoacyl-tRNA editing domain lpp1210 PF01047 MarR family lpp1211 PF02567 Phenazine biosynthesis-like protein lpp1221 PF02211 Nitrile hydratase beta subunit lpp1223 PF01218 Coproporphyrinogen III oxidase lpp1224 PF00460 Flagella basal body rod protein lpp1225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal lpp1225 PF00460 Flagella basal body rod protein lpp1226 PF03963 Flagellar hook capping protein - N-terminal region lpp1227 PF00460 Flagella basal body rod protein lpp1227 PF07559 Flagellar basal body protein FlaE lpp1227 PF06429 Flagellar basal body rod FlgEFG protein C-terminal lpp1228 PF00460 Flagella basal body rod protein lpp1228 PF06429 Flagellar basal body rod FlgEFG protein C-terminal lpp1230 PF02107 Flagellar L-ring protein lpp1231 PF02119 Flagellar P-ring protein lpp1233 PF07196 Flagellin hook IN motif lpp1233 PF06429 Flagellar basal body rod FlgEFG protein C-terminal lpp1238 PF03600 Citrate transporter lpp1238 PF02080 TrkA-C domain lpp1243 PF00390 Malic enzyme, N-terminal domain lpp1243 PF03949 Malic enzyme, NAD binding domain lpp1245 PF01975 Survival protein SurE lpp1246 PF01476 LysM domain lpp1246 PF01551 Peptidase family M23 lpp1247 PF04542 Sigma-70 region 2 lpp1247 PF00140 Sigma-70 factor, region 1.2 lpp1247 PF04545 Sigma-70, region 4 lpp1247 PF04539 Sigma-70 region 3 lpp1248 PF04209 homogentisate 1,2-dioxygenase lpp1249 PF01709 Transcriptional regulator lpp1250 PF02075 Crossover junction endodeoxyribonuclease RuvC lpp1251 PF07499 RuvA, C-terminal domain lpp1251 PF01330 RuvA N terminal domain lpp1254 PF08521 Two-component sensor kinase N-terminal lpp1254 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase lpp1254 PF00512 His Kinase A (phospho-acceptor) domain lpp1255 PF00486 Transcriptional regulatory protein, C terminal lpp1255 PF00072 Response regulator receiver domain lpp1256 PF04279 Intracellular septation protein A lpp1257 PF01476 LysM domain lpp1257 PF01464 Transglycosylase SLT domain lpp1258 PF00753 Metallo-beta-lactamase superfamily lpp1258 PF16123 Hydroxyacylglutathione hydrolase C-terminus lpp1259 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ lpp1261 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain lpp1261 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain lpp1265 PF08338 Domain of unknown function (DUF1731) lpp1265 PF01370 NAD dependent epimerase/dehydratase family lpp1266 PF01416 tRNA pseudouridine synthase lpp1267 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase lpp1268 PF00291 Pyridoxal-phosphate dependent enzyme lpp1269 PF00290 Tryptophan synthase alpha chain lpp1270 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain lpp1270 PF00749 tRNA synthetases class I (E and Q), catalytic domain lpp1271 PF01406 tRNA synthetases class I (C) catalytic domain lpp1271 PF09190 DALR domain lpp1274 PF00437 Type II/IV secretion system protein lpp1275 PF00263 Bacterial type II and III secretion system protein lpp1275 PF03958 Bacterial type II/III secretion system short domain lpp1276 PF01408 Oxidoreductase family, NAD-binding Rossmann fold lpp1276 PF02894 Oxidoreductase family, C-terminal alpha/beta domain lpp1277 PF00211 Adenylate and Guanylate cyclase catalytic domain lpp1277 PF02743 Cache domain lpp1277 PF00672 HAMP domain lpp1278 PF07690 Major Facilitator Superfamily lpp1279 PF00083 Sugar (and other) transporter lpp1279 PF07690 Major Facilitator Superfamily lpp1280 PF06276 Ferric iron reductase FhuF-like transporter lpp1280 PF04183 IucA / IucC family lpp1287 PF01479 S4 domain lpp1287 PF00849 RNA pseudouridylate synthase lpp1288 PF04055 Radical SAM superfamily lpp1288 PF01938 TRAM domain lpp1288 PF00919 Uncharacterized protein family UPF0004 lpp1291 PF02561 Flagellar protein FliS lpp1292 PF07195 Flagellar hook-associated protein 2 C-terminus lpp1292 PF07196 Flagellin hook IN motif lpp1292 PF02465 Flagellar hook-associated protein 2 N-terminus lpp1295 PF17848 Acetyl-coA carboxylase zinc finger domain lpp1295 PF01039 Carboxyl transferase domain lpp1296 PF02875 Mur ligase family, glutamate ligase domain lpp1296 PF08245 Mur ligase middle domain lpp1298 PF02674 Colicin V production protein lpp1299 PF01467 Cytidylyltransferase-like lpp1302 PF08264 Anticodon-binding domain of tRNA lpp1302 PF00133 tRNA synthetases class I (I, L, M and V) lpp1302 PF13603 Leucyl-tRNA synthetase, Domain 2 lpp1303 PF00795 Carbon-nitrogen hydrolase lpp1305 PF00171 Aldehyde dehydrogenase family lpp1306 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain lpp1306 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain lpp1306 PF00378 Enoyl-CoA hydratase/isomerase lpp1307 PF00108 Thiolase, N-terminal domain lpp1307 PF02803 Thiolase, C-terminal domain lpp1311 PF03707 Bacterial signalling protein N terminal repeat lpp1311 PF00990 Diguanylate cyclase, GGDEF domain lpp1311 PF00563 EAL domain lpp1312 PF03934 Type II secretion system (T2SS), protein K lpp1313 PF11612 Type II secretion system (T2SS), protein J lpp1313 PF07963 Prokaryotic N-terminal methylation motif lpp1314 PF02501 Type II secretion system (T2SS), protein I lpp1314 PF07963 Prokaryotic N-terminal methylation motif lpp1315 PF12019 Type II transport protein GspH lpp1315 PF07963 Prokaryotic N-terminal methylation motif lpp1316 PF08334 Type II secretion system (T2SS), protein G lpp1316 PF07963 Prokaryotic N-terminal methylation motif lpp1317 PF00482 Type II secretion system (T2SS), protein F lpp1318 PF03951 Glutamine synthetase, beta-Grasp domain lpp1318 PF00120 Glutamine synthetase, catalytic domain lpp1320 PF03883 Peroxide stress protein YaaA lpp1321 PF00291 Pyridoxal-phosphate dependent enzyme lpp1325 PF02684 Lipid-A-disaccharide synthetase lpp1326 PF01408 Oxidoreductase family, NAD-binding Rossmann fold lpp1326 PF02894 Oxidoreductase family, C-terminal alpha/beta domain lpp1327 PF01351 Ribonuclease HII lpp1328 PF01098 Cell cycle protein lpp1329 PF00905 Penicillin binding protein transpeptidase domain lpp1329 PF03717 Penicillin-binding Protein dimerisation domain lpp1331 PF02590 Predicted SPOUT methyltransferase lpp1333 PF00854 POT family lpp1335 PF00221 Aromatic amino acid lyase lpp1336 PF00171 Aldehyde dehydrogenase family lpp1338 PF00075 RNase H lpp1339 PF00929 Exonuclease lpp1346 PF01783 Ribosomal L32p protein family lpp1347 PF02504 Fatty acid synthesis protein lpp1348 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III lpp1348 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal lpp1349 PF00698 Acyl transferase domain lpp1351 PF00550 Phosphopantetheine attachment site lpp1352 PF02801 Beta-ketoacyl synthase, C-terminal domain lpp1352 PF00109 Beta-ketoacyl synthase, N-terminal domain lpp1353 PF02618 YceG-like family lpp1354 PF02223 Thymidylate kinase lpp1355 PF12169 DNA polymerase III subunits gamma and tau domain III lpp1357 PF01026 TatD related DNase lpp1358 PF03702 Anhydro-N-acetylmuramic acid kinase lpp1360 PF07690 Major Facilitator Superfamily lpp1361 PF00535 Glycosyl transferase family 2 lpp1366 PF05191 Adenylate kinase, active site lid lpp1367 PF00085 Thioredoxin lpp1368 PF01266 FAD dependent oxidoreductase lpp1368 PF16901 C-terminal domain of alpha-glycerophosphate oxidase lpp1369 PF02782 FGGY family of carbohydrate kinases, C-terminal domain lpp1369 PF00370 FGGY family of carbohydrate kinases, N-terminal domain lpp1370 PF00285 Citrate synthase, C-terminal domain lpp1372 PF03989 DNA gyrase C-terminal domain, beta-propeller lpp1372 PF00521 DNA gyrase/topoisomerase IV, subunit A lpp1373 PF00266 Aminotransferase class-V lpp1374 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) lpp1375 PF02224 Cytidylate kinase lpp1378 PF18073 Rubredoxin metal binding domain lpp1379 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family lpp1380 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family lpp1382 PF00106 short chain dehydrogenase lpp1385 PF01040 UbiA prenyltransferase family lpp1388 PF01791 DeoC/LacD family aldolase lpp1389 PF01048 Phosphorylase superfamily lpp1392 PF16750 Sensor domain of 2-component histidine kinase lpp1392 PF00672 HAMP domain lpp1392 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase lpp1392 PF00512 His Kinase A (phospho-acceptor) domain lpp1393 PF00072 Response regulator receiver domain lpp1393 PF00486 Transcriptional regulatory protein, C terminal lpp1394 PF03471 Transporter associated domain lpp1394 PF00571 CBS domain lpp1395 PF02130 Uncharacterized protein family UPF0054 lpp1396 PF02562 PhoH-like protein lpp1397 PF02811 PHP domain lpp1398 PF01300 Telomere recombination lpp1399 PF00579 tRNA synthetases class I (W and Y) lpp1400 PF02616 Segregation and condensation protein ScpA lpp1401 PF04079 Segregation and condensation complex subunit ScpB lpp1402 PF01479 S4 domain lpp1402 PF00849 RNA pseudouridylate synthase lpp1410 PF07690 Major Facilitator Superfamily lpp1412 PF01938 TRAM domain lpp1412 PF05958 tRNA (Uracil-5-)-methyltransferase lpp1413 PF04607 Region found in RelA / SpoT proteins lpp1413 PF02824 TGS domain lpp1413 PF13291 ACT domain lpp1415 PF00155 Aminotransferase class I and II lpp1417 PF01368 DHH family lpp1417 PF02272 DHHA1 domain lpp1417 PF17768 RecJ OB domain lpp1418 PF01207 Dihydrouridine synthase (Dus) lpp1419 PF01043 SecA preprotein cross-linking domain lpp1419 PF07516 SecA Wing and Scaffold domain lpp1419 PF07517 SecA DEAD-like domain lpp1419 PF02810 SEC-C motif lpp1420 PF00293 NUDIX domain lpp1425 PF12792 CSS motif domain associated with EAL lpp1425 PF00563 EAL domain lpp1427 PF00202 Aminotransferase class-III lpp1428 PF06968 Biotin and Thiamin Synthesis associated domain lpp1428 PF04055 Radical SAM superfamily lpp1429 PF00155 Aminotransferase class I and II lpp1430 PF12697 Alpha/beta hydrolase family lpp1434 PF00152 tRNA synthetases class II (D, K and N) lpp1434 PF02938 GAD domain lpp1434 PF01336 OB-fold nucleic acid binding domain lpp1435 PF00924 Mechanosensitive ion channel lpp1435 PF12795 Mechanosensitive ion channel porin domain lpp1435 PF12794 Mechanosensitive ion channel inner membrane domain 1 lpp1436 PF02976 DNA mismatch repair enzyme MutH lpp1439 PF03793 PASTA domain lpp1439 PF00069 Protein kinase domain lpp1446 PF00211 Adenylate and Guanylate cyclase catalytic domain lpp1453 PF12252 Dot/Icm substrate protein lpp1454 PF01433 Peptidase family M1 domain lpp1454 PF11940 Domain of unknown function (DUF3458) Ig-like fold lpp1454 PF17432 Domain of unknown function (DUF3458_C) ARM repeats lpp1459 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain lpp1459 PF07992 Pyridine nucleotide-disulphide oxidoreductase lpp1463 PF03186 CobD/Cbib protein lpp1464 PF02254 TrkA-N domain lpp1464 PF00999 Sodium/hydrogen exchanger family lpp1465 PF03330 Lytic transglycolase lpp1465 PF05036 Sporulation related domain lpp1466 PF00768 D-alanyl-D-alanine carboxypeptidase lpp1466 PF07943 Penicillin-binding protein 5, C-terminal domain lpp1467 PF01063 Amino-transferase class IV lpp1468 PF04359 Protein of unknown function (DUF493) lpp1469 PF03099 Biotin/lipoate A/B protein ligase family lpp1470 PF09335 SNARE associated Golgi protein lpp1472 PF03734 L,D-transpeptidase catalytic domain lpp1473 PF03412 Peptidase C39 family lpp1473 PF00005 ABC transporter lpp1473 PF00664 ABC transporter transmembrane region lpp1475 PF00360 Phytochrome region lpp1475 PF00990 Diguanylate cyclase, GGDEF domain lpp1475 PF00563 EAL domain lpp1475 PF01590 GAF domain lpp1479 PF00437 Type II/IV secretion system protein lpp1479 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain lpp1480 PF00482 Type II secretion system (T2SS), protein F lpp1481 PF06750 Bacterial Peptidase A24 N-terminal domain lpp1481 PF01478 Type IV leader peptidase family lpp1485 PF03618 Kinase/pyrophosphorylase lpp1487 PF00285 Citrate synthase, C-terminal domain lpp1488 PF02567 Phenazine biosynthesis-like protein lpp1489 PF05430 S-adenosyl-L-methionine-dependent methyltransferase lpp1489 PF01266 FAD dependent oxidoreductase lpp1490 PF00854 POT family lpp1491 PF00202 Aminotransferase class-III lpp1492 PF00301 Rubredoxin lpp1494 PF03741 Integral membrane protein TerC family lpp1495 PF12627 Probable RNA and SrmB- binding site of polymerase A lpp1495 PF12626 Polymerase A arginine-rich C-terminus lpp1495 PF01743 Poly A polymerase head domain lpp1496 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) lpp1497 PF00582 Universal stress protein family lpp1498 PF01926 50S ribosome-binding GTPase lpp1498 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal lpp1499 PF13360 PQQ-like domain lpp1501 PF03129 Anticodon binding domain lpp1501 PF13393 Histidyl-tRNA synthetase lpp1504 PF04055 Radical SAM superfamily lpp1507 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) lpp1509 PF00149 Calcineurin-like phosphoesterase lpp1510 PF03775 Septum formation inhibitor MinC, C-terminal domain lpp1510 PF05209 Septum formation inhibitor MinC, N-terminal domain lpp1511 PF13193 AMP-binding enzyme C-terminal domain lpp1511 PF00501 AMP-binding enzyme lpp1512 PF00497 Bacterial extracellular solute-binding proteins, family 3 lpp1514 PF04715 Anthranilate synthase component I, N terminal region lpp1514 PF00425 chorismate binding enzyme lpp1515 PF00676 Dehydrogenase E1 component lpp1516 PF02780 Transketolase, C-terminal domain lpp1516 PF02779 Transketolase, pyrimidine binding domain lpp1517 PF02817 e3 binding domain lpp1517 PF00364 Biotin-requiring enzyme lpp1517 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) lpp1518 PF00924 Mechanosensitive ion channel lpp1518 PF12795 Mechanosensitive ion channel porin domain lpp1518 PF12794 Mechanosensitive ion channel inner membrane domain 1 lpp1523 PF01266 FAD dependent oxidoreductase lpp1525 PF05690 Thiazole biosynthesis protein ThiG lpp1526 PF02581 Thiamine monophosphate synthase lpp1527 PF00899 ThiF family lpp1527 PF00581 Rhodanese-like domain lpp1531 PF02472 Biopolymer transport protein ExbD/TolR lpp1532 PF01618 MotA/TolQ/ExbB proton channel family lpp1534 PF17864 RuvB AAA lid domain lpp1534 PF05496 Holliday junction DNA helicase RuvB P-loop domain lpp1534 PF05491 RuvB C-terminal winged helix domain lpp1535 PF08281 Sigma-70, region 4 lpp1535 PF04542 Sigma-70 region 2 lpp1536 PF03937 Flavinator of succinate dehydrogenase lpp1540 PF03734 L,D-transpeptidase catalytic domain lpp1540 PF01476 LysM domain lpp1541 PF00171 Aldehyde dehydrogenase family lpp1547 PF01281 Ribosomal protein L9, N-terminal domain lpp1547 PF03948 Ribosomal protein L9, C-terminal domain lpp1549 PF01084 Ribosomal protein S18 lpp1550 PF01250 Ribosomal protein S6 lpp1553 PF01476 LysM domain lpp1553 PF17969 L,D-transpeptidase C-terminal domain lpp1553 PF03734 L,D-transpeptidase catalytic domain lpp1554 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain lpp1554 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain lpp1554 PF00378 Enoyl-CoA hydratase/isomerase lpp1555 PF02803 Thiolase, C-terminal domain lpp1555 PF00108 Thiolase, N-terminal domain lpp1563 PF02796 Helix-turn-helix domain of resolvase lpp1563 PF00665 Integrase core domain lpp1564 PF01695 IstB-like ATP binding protein lpp1572 PF00311 Phosphoenolpyruvate carboxylase lpp1573 PF00293 NUDIX domain lpp1575 PF00696 Amino acid kinase family lpp1575 PF01472 PUA domain lpp1576 PF00583 Acetyltransferase (GNAT) family lpp1578 PF04480 Protein of unknown function (DUF559) lpp1582 PF13411 MerR HTH family regulatory protein lpp1582 PF07739 TipAS antibiotic-recognition domain lpp1585 PF00005 ABC transporter lpp1585 PF00664 ABC transporter transmembrane region lpp1588 PF00905 Penicillin binding protein transpeptidase domain lpp1589 PF03717 Penicillin-binding Protein dimerisation domain lpp1589 PF00905 Penicillin binding protein transpeptidase domain lpp1594 PF00561 alpha/beta hydrolase fold lpp1601 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III lpp1601 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal lpp1602 PF00534 Glycosyl transferases group 1 lpp1602 PF13439 Glycosyltransferase Family 4 lpp1604 PF13183 4Fe-4S dicluster domain lpp1604 PF01565 FAD binding domain lpp1604 PF02913 FAD linked oxidases, C-terminal domain lpp1608 PF05977 Transmembrane secretion effector lpp1610 PF01169 Uncharacterized protein family UPF0016 lpp1611 PF07676 WD40-like Beta Propeller Repeat lpp1611 PF04052 TolB amino-terminal domain lpp1617 PF01292 Prokaryotic cytochrome b561 lpp1620 PF01261 Xylose isomerase-like TIM barrel lpp1621 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain lpp1621 PF00205 Thiamine pyrophosphate enzyme, central domain lpp1621 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain lpp1622 PF00294 pfkB family carbohydrate kinase lpp1623 PF02894 Oxidoreductase family, C-terminal alpha/beta domain lpp1623 PF01408 Oxidoreductase family, NAD-binding Rossmann fold lpp1626 PF04151 Bacterial pre-peptidase C-terminal domain lpp1626 PF01447 Thermolysin metallopeptidase, catalytic domain lpp1626 PF03413 Peptidase propeptide and YPEB domain lpp1626 PF07504 Fungalysin/Thermolysin Propeptide Motif lpp1626 PF02868 Thermolysin metallopeptidase, alpha-helical domain lpp1629 PF13520 Amino acid permease lpp1635 PF06832 Penicillin-Binding Protein C-terminus Family lpp1635 PF00912 Transglycosylase lpp1635 PF00905 Penicillin binding protein transpeptidase domain lpp1644 PF00551 Formyl transferase lpp1645 PF02843 Phosphoribosylglycinamide synthetase, C domain lpp1645 PF02844 Phosphoribosylglycinamide synthetase, N domain lpp1645 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain lpp1646 PF00156 Phosphoribosyl transferase domain lpp1650 PF00586 AIR synthase related protein, N-terminal domain lpp1650 PF02769 AIR synthase related protein, C-terminal domain lpp1650 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain lpp1653 PF11412 Disulphide bond corrector protein DsbC lpp1653 PF02683 Cytochrome C biogenesis protein transmembrane region lpp1657 PF02120 Flagellar hook-length control protein FliK lpp1660 PF13520 Amino acid permease lpp1663 PF17516 ProQ C-terminal domain lpp1663 PF04352 ProQ/FINO family lpp1668 PF11798 IMS family HHH motif lpp1668 PF00817 impB/mucB/samB family lpp1668 PF11799 impB/mucB/samB family C-terminal domain lpp1668 PF13438 Domain of unknown function (DUF4113) lpp1669 PF00717 Peptidase S24-like lpp1671 PF04958 Arginine N-succinyltransferase beta subunit lpp1672 PF00171 Aldehyde dehydrogenase family lpp1673 PF04996 Succinylarginine dihydrolase lpp1677 PF00696 Amino acid kinase family lpp1678 PF00889 Elongation factor TS lpp1684 PF00557 Metallopeptidase family M24 lpp1685 PF08335 GlnD PII-uridylyltransferase lpp1685 PF03445 Putative nucleotidyltransferase DUF294 lpp1685 PF01966 HD domain lpp1686 PF14437 MafB19-like deaminase lpp1688 PF00478 IMP dehydrogenase / GMP reductase domain lpp1688 PF00571 CBS domain lpp1689 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain lpp1690 PF03776 Septum formation topological specificity factor MinE lpp1696 PF00528 Binding-protein-dependent transport system inner membrane component lpp1697 PF08240 Alcohol dehydrogenase GroES-like domain lpp1697 PF00107 Zinc-binding dehydrogenase lpp1698 PF00654 Voltage gated chloride channel lpp1699 PF04715 Anthranilate synthase component I, N terminal region lpp1699 PF00425 chorismate binding enzyme lpp1699 PF00117 Glutamine amidotransferase class-I lpp1700 PF02686 Glu-tRNAGln amidotransferase C subunit lpp1701 PF01425 Amidase lpp1702 PF02934 GatB/GatE catalytic domain lpp1702 PF02637 GatB domain lpp1703 PF00266 Aminotransferase class-V lpp1704 PF00211 Adenylate and Guanylate cyclase catalytic domain lpp1711 PF00588 SpoU rRNA Methylase family lpp1712 PF00459 Inositol monophosphatase family lpp1713 PF01343 Peptidase family S49 lpp1717 PF08245 Mur ligase middle domain lpp1717 PF01225 Mur ligase family, catalytic domain lpp1717 PF02875 Mur ligase family, glutamate ligase domain lpp1721 PF18269 T3SS EscN ATPase C-terminal domain lpp1721 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain lpp1723 PF14841 FliG middle domain lpp1723 PF01706 FliG C-terminal domain lpp1723 PF14842 FliG N-terminal domain lpp1725 PF02049 Flagellar hook-basal body complex protein FliE lpp1727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase lpp1727 PF00989 PAS fold lpp1727 PF00512 His Kinase A (phospho-acceptor) domain lpp1728 PF12002 MgsA AAA+ ATPase C terminal lpp1728 PF16193 AAA C-terminal domain lpp1728 PF00004 ATPase family associated with various cellular activities (AAA) lpp1730 PF09397 Ftsk gamma domain lpp1730 PF01580 FtsK/SpoIIIE family lpp1730 PF17854 FtsK alpha domain lpp1730 PF13491 4TM region of DNA translocase FtsK/SpoIIIE lpp1731 PF07992 Pyridine nucleotide-disulphide oxidoreductase lpp1732 PF03588 Leucyl/phenylalanyl-tRNA protein transferase lpp1733 PF00581 Rhodanese-like domain lpp1733 PF01206 Sulfurtransferase TusA lpp1734 PF01176 Translation initiation factor 1A / IF-1 lpp1741 PF01336 OB-fold nucleic acid binding domain lpp1741 PF00152 tRNA synthetases class II (D, K and N) lpp1742 PF03462 PCRF domain lpp1742 PF00472 RF-1 domain lpp1744 PF00691 OmpA family lpp1744 PF13677 Membrane MotB of proton-channel complex MotA/MotB lpp1745 PF01618 MotA/TolQ/ExbB proton channel family lpp1746 PF04542 Sigma-70 region 2 lpp1746 PF04539 Sigma-70 region 3 lpp1746 PF04545 Sigma-70, region 4 lpp1748 PF00448 SRP54-type protein, GTPase domain lpp1751 PF01311 Bacterial export proteins, family 1 lpp1752 PF01313 Bacterial export proteins, family 3 lpp1753 PF00813 FliP family lpp1754 PF04347 Flagellar biosynthesis protein, FliO lpp1755 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term lpp1756 PF02154 Flagellar motor switch protein FliM lpp1756 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term lpp1758 PF01565 FAD binding domain lpp1758 PF04030 D-arabinono-1,4-lactone oxidase lpp1760 PF03466 LysR substrate binding domain lpp1760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family lpp1763 PF01411 tRNA synthetases class II (A) lpp1763 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain lpp1763 PF02272 DHHA1 domain lpp1764 PF02631 RecX family lpp1765 PF00154 recA bacterial DNA recombination protein lpp1768 PF00488 MutS domain V lpp1768 PF05192 MutS domain III lpp1768 PF05188 MutS domain II lpp1768 PF05190 MutS family domain IV lpp1768 PF01624 MutS domain I lpp1770 PF04357 TamB, inner membrane protein subunit of TAM complex lpp1774 PF01842 ACT domain lpp1774 PF00696 Amino acid kinase family lpp1775 PF13361 UvrD-like helicase C-terminal domain lpp1775 PF00580 UvrD/REP helicase N-terminal domain lpp1775 PF12705 PD-(D/E)XK nuclease superfamily lpp1776 PF10609 NUBPL iron-transfer P-loop NTPase lpp1778 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family lpp1778 PF03466 LysR substrate binding domain lpp1782 PF00005 ABC transporter lpp1782 PF00664 ABC transporter transmembrane region lpp1784 PF01180 Dihydroorotate dehydrogenase lpp1787 PF00441 Acyl-CoA dehydrogenase, C-terminal domain lpp1787 PF02771 Acyl-CoA dehydrogenase, N-terminal domain lpp1787 PF02770 Acyl-CoA dehydrogenase, middle domain lpp1790 PF01039 Carboxyl transferase domain lpp1791 PF00378 Enoyl-CoA hydratase/isomerase lpp1792 PF02785 Biotin carboxylase C-terminal domain lpp1792 PF00289 Biotin carboxylase, N-terminal domain lpp1792 PF00364 Biotin-requiring enzyme lpp1792 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain lpp1793 PF00682 HMGL-like lpp1794 PF00501 AMP-binding enzyme lpp1794 PF13193 AMP-binding enzyme C-terminal domain lpp1796 PF09383 NIL domain lpp1796 PF00005 ABC transporter lpp1797 PF00528 Binding-protein-dependent transport system inner membrane component lpp1801 PF04445 Putative SAM-dependent methyltransferase lpp1803 PF02092 Glycyl-tRNA synthetase beta subunit lpp1803 PF05746 DALR anticodon binding domain lpp1804 PF02091 Glycyl-tRNA synthetase alpha subunit lpp1806 PF13361 UvrD-like helicase C-terminal domain lpp1806 PF00580 UvrD/REP helicase N-terminal domain lpp1807 PF00561 alpha/beta hydrolase fold lpp1808 PF02580 D-Tyr-tRNA(Tyr) deacylase lpp1812 PF01541 GIY-YIG catalytic domain lpp1817 PF00581 Rhodanese-like domain lpp1819 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase lpp1820 PF00485 Phosphoribulokinase / Uridine kinase family lpp1827 PF02190 ATP-dependent protease La (LON) substrate-binding domain lpp1827 PF05362 Lon protease (S16) C-terminal proteolytic domain lpp1827 PF00004 ATPase family associated with various cellular activities (AAA) lpp1829 PF00574 Clp protease lpp1834 PF00035 Double-stranded RNA binding motif lpp1834 PF14622 Ribonuclease-III-like lpp1836 PF10502 Signal peptidase, peptidase S26 lpp1837 PF06421 GTP-binding protein LepA C-terminus lpp1837 PF00009 Elongation factor Tu GTP binding domain lpp1837 PF00679 Elongation factor G C-terminus lpp1837 PF03144 Elongation factor Tu domain 2 lpp1838 PF13406 Transglycosylase SLT domain lpp1840 PF04612 Type II secretion system (T2SS), protein M lpp1842 PF13286 Phosphohydrolase-associated domain lpp1842 PF01966 HD domain lpp1844 PF01204 Trehalase lpp1846 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily lpp1847 PF03350 Uncharacterized protein family, UPF0114 lpp1852 PF01541 GIY-YIG catalytic domain lpp1853 PF00708 Acylphosphatase lpp1860 PF07690 Major Facilitator Superfamily lpp1861 PF00654 Voltage gated chloride channel lpp1865 PF02810 SEC-C motif lpp1866 PF00999 Sodium/hydrogen exchanger family lpp1866 PF02254 TrkA-N domain lpp1869 PF04480 Protein of unknown function (DUF559) lpp1871 PF17863 AAA lid domain lpp1871 PF07726 ATPase family associated with various cellular activities (AAA) lpp1873 PF01841 Transglutaminase-like superfamily lpp1873 PF11992 Domain of unknown function (DUF3488) lpp1873 PF13559 Domain of unknown function (DUF4129) lpp1874 PF08007 Cupin superfamily protein lpp1881 PF04315 Elongation factor P hydroxylase lpp1883 PF02798 Glutathione S-transferase, N-terminal domain lpp1883 PF00043 Glutathione S-transferase, C-terminal domain lpp1885 PF00144 Beta-lactamase lpp1891 PF01722 BolA-like protein lpp1892 PF13520 Amino acid permease lpp1894 PF02348 Cytidylyltransferase lpp1896 PF00814 Glycoprotease family lpp1897 PF04851 Type III restriction enzyme, res subunit lpp1897 PF13307 Helicase C-terminal domain lpp1898 PF11953 Domain of unknown function (DUF3470) lpp1898 PF00037 4Fe-4S binding domain lpp1902 PF04362 Bacterial Fe(2+) trafficking lpp1903 PF04227 Indigoidine synthase A like protein lpp1910 PF13173 AAA domain lpp1910 PF13635 Domain of unknown function (DUF4143) lpp1917 PF05050 Methyltransferase FkbM domain lpp1920 PF16197 Ketoacyl-synthetase C-terminal extension lpp1920 PF00698 Acyl transferase domain lpp1920 PF00109 Beta-ketoacyl synthase, N-terminal domain lpp1920 PF02801 Beta-ketoacyl synthase, C-terminal domain lpp1920 PF00550 Phosphopantetheine attachment site lpp1920 PF00668 Condensation domain lpp1921 PF00501 AMP-binding enzyme lpp1921 PF00668 Condensation domain lpp1921 PF00550 Phosphopantetheine attachment site lpp1921 PF13193 AMP-binding enzyme C-terminal domain lpp1921 PF00975 Thioesterase domain lpp1923 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain lpp1923 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain lpp1926 PF02112 cAMP phosphodiesterases class-II lpp1934 PF00149 Calcineurin-like phosphoesterase lpp1938 PF13378 Enolase C-terminal domain-like lpp1938 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain lpp1944 PF01541 GIY-YIG catalytic domain lpp1949 PF18665 Tetracyclin repressor-like, C-terminal domain lpp1949 PF00440 Bacterial regulatory proteins, tetR family lpp1953 PF00043 Glutathione S-transferase, C-terminal domain lpp1953 PF02798 Glutathione S-transferase, N-terminal domain lpp1954 PF02566 OsmC-like protein lpp1961 PF04488 Glycosyltransferase sugar-binding region containing DXD motif lpp1966 PF01979 Amidohydrolase family lpp1969 PF01872 RibD C-terminal domain lpp1975 PF06725 3D domain lpp1975 PF03562 MltA specific insert domain lpp1979 PF00155 Aminotransferase class I and II lpp1980 PF01329 Pterin 4 alpha carbinolamine dehydratase lpp1981 PF02355 Protein export membrane protein lpp1981 PF07549 SecD/SecF GG Motif lpp1982 PF02355 Protein export membrane protein lpp1982 PF07549 SecD/SecF GG Motif lpp1982 PF13721 SecD export protein N-terminal TM region lpp1983 PF02699 Preprotein translocase subunit lpp1984 PF01702 Queuine tRNA-ribosyltransferase lpp1985 PF02547 Queuosine biosynthesis protein lpp1989 PF01042 Endoribonuclease L-PSP lpp1990 PF04607 Region found in RelA / SpoT proteins lpp1990 PF02824 TGS domain lpp1990 PF13291 ACT domain lpp1992 PF00625 Guanylate kinase lpp1993 PF08340 Domain of unknown function (DUF1732) lpp1993 PF03755 YicC-like family, N-terminal region lpp1994 PF03725 3' exoribonuclease family, domain 2 lpp1994 PF01138 3' exoribonuclease family, domain 1 lpp1995 PF00437 Type II/IV secretion system protein lpp1996 PF01168 Alanine racemase, N-terminal domain lpp1997 PF03807 NADP oxidoreductase coenzyme F420-dependent lpp1997 PF14748 Pyrroline-5-carboxylate reductase dimerisation lpp2002 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term lpp2002 PF12833 Helix-turn-helix domain lpp2004 PF00438 S-adenosylmethionine synthetase, N-terminal domain lpp2004 PF02773 S-adenosylmethionine synthetase, C-terminal domain lpp2004 PF02772 S-adenosylmethionine synthetase, central domain lpp2005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain lpp2005 PF00117 Glutamine amidotransferase class-I lpp2006 PF01556 DnaJ C terminal domain lpp2006 PF00684 DnaJ central domain lpp2006 PF00226 DnaJ domain lpp2007 PF00012 Hsp70 protein lpp2008 PF01025 GrpE lpp2009 PF01474 Class-II DAHP synthetase family lpp2010 PF01208 Uroporphyrinogen decarboxylase (URO-D) lpp2011 PF02152 Dihydroneopterin aldolase lpp2013 PF05746 DALR anticodon binding domain lpp2013 PF00750 tRNA synthetases class I (R) lpp2013 PF03485 Arginyl tRNA synthetase N terminal domain lpp2015 PF00271 Helicase conserved C-terminal domain lpp2015 PF00270 DEAD/DEAH box helicase lpp2015 PF17191 RecG wedge domain lpp2017 PF01545 Cation efflux family lpp2017 PF16916 Dimerisation domain of Zinc Transporter lpp2019 PF02545 Maf-like protein lpp2021 PF04977 Septum formation initiator lpp2025 PF16331 TolA binding protein trimerisation lpp2026 PF00691 OmpA family lpp2029 PF00005 ABC transporter lpp2029 PF09383 NIL domain lpp2030 PF02405 Permease MlaE lpp2034 PF01070 FMN-dependent dehydrogenase lpp2035 PF00368 Hydroxymethylglutaryl-coenzyme A reductase lpp2037 PF01610 Transposase lpp2037 PF13542 Helix-turn-helix domain of transposase family ISL3 lpp2037 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 lpp2038 PF00561 alpha/beta hydrolase fold lpp2038 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus lpp2041 PF00313 'Cold-shock' DNA-binding domain lpp2042 PF03880 DbpA RNA binding domain lpp2042 PF00270 DEAD/DEAH box helicase lpp2042 PF00271 Helicase conserved C-terminal domain lpp2045 PF03069 Acetamidase/Formamidase family lpp2046 PF01609 Transposase DDE domain lpp2051 PF01541 GIY-YIG catalytic domain lpp2060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family lpp2060 PF03466 LysR substrate binding domain lpp2062 PF12252 Dot/Icm substrate protein lpp2063 PF00027 Cyclic nucleotide-binding domain lpp2063 PF00005 ABC transporter lpp2064 PF02705 K+ potassium transporter lpp2071 PF03707 Bacterial signalling protein N terminal repeat lpp2071 PF00563 EAL domain lpp2071 PF00990 Diguanylate cyclase, GGDEF domain lpp2072 PF00083 Sugar (and other) transporter lpp2072 PF08946 Osmosensory transporter coiled coil lpp2073 PF00873 AcrB/AcrD/AcrF family lpp2074 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion lpp2074 PF00529 HlyD membrane-fusion protein of T1SS lpp2077 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family lpp2077 PF03466 LysR substrate binding domain lpp2078 PF01243 Pyridoxamine 5'-phosphate oxidase lpp2078 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region lpp2079 PF01638 HxlR-like helix-turn-helix lpp2084 PF00072 Response regulator receiver domain lpp2084 PF13426 PAS domain lpp2084 PF08448 PAS fold lpp2084 PF00512 His Kinase A (phospho-acceptor) domain lpp2084 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase lpp2085 PF07237 Protein of unknown function (DUF1428) lpp2095 PF12252 Dot/Icm substrate protein lpp2100 PF11339 Protein of unknown function (DUF3141) lpp2110 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain lpp2110 PF05221 S-adenosyl-L-homocysteine hydrolase lpp2123 PF00589 Phage integrase family lpp2127 PF04909 Amidohydrolase lpp2128 PF00282 Pyridoxal-dependent decarboxylase conserved domain lpp2129 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion lpp2130 PF00873 AcrB/AcrD/AcrF family lpp2131 PF00550 Phosphopantetheine attachment site lpp2131 PF00668 Condensation domain lpp2131 PF13193 AMP-binding enzyme C-terminal domain lpp2131 PF00501 AMP-binding enzyme lpp2131 PF00975 Thioesterase domain lpp2132 PF00512 His Kinase A (phospho-acceptor) domain lpp2132 PF09308 LuxQ, periplasmic lpp2132 PF00072 Response regulator receiver domain lpp2132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase lpp2133 PF18415 Histidine kinase receptor ArcB trans-membrane domain lpp2133 PF00989 PAS fold lpp2133 PF00072 Response regulator receiver domain lpp2133 PF00512 His Kinase A (phospho-acceptor) domain lpp2133 PF01627 Hpt domain lpp2133 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase lpp2136 PF14765 Polyketide synthase dehydratase lpp2136 PF00550 Phosphopantetheine attachment site lpp2136 PF08659 KR domain lpp2136 PF02801 Beta-ketoacyl synthase, C-terminal domain lpp2136 PF00109 Beta-ketoacyl synthase, N-terminal domain lpp2136 PF00698 Acyl transferase domain lpp2136 PF16197 Ketoacyl-synthetase C-terminal extension lpp2138 PF03741 Integral membrane protein TerC family lpp2141 PF00011 Hsp20/alpha crystallin family lpp2143 PF00484 Carbonic anhydrase lpp2145 PF02423 Ornithine cyclodeaminase/mu-crystallin family lpp2148 PF00854 POT family lpp2151 PF01139 tRNA-splicing ligase RtcB lpp2155 PF03062 MBOAT, membrane-bound O-acyltransferase family lpp2159 PF08240 Alcohol dehydrogenase GroES-like domain lpp2159 PF00107 Zinc-binding dehydrogenase lpp2160 PF01161 Phosphatidylethanolamine-binding protein lpp2165 PF01370 NAD dependent epimerase/dehydratase family lpp2165 PF08338 Domain of unknown function (DUF1731) lpp2170 PF00848 Ring hydroxylating alpha subunit (catalytic domain) lpp2170 PF00355 Rieske [2Fe-2S] domain lpp2173 PF14602 Hexapeptide repeat of succinyl-transferase lpp2173 PF00132 Bacterial transferase hexapeptide (six repeats) lpp2173 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal lpp2178 PF01039 Carboxyl transferase domain lpp2179 PF13505 Outer membrane protein beta-barrel domain lpp2180 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III lpp2180 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal lpp2181 PF00501 AMP-binding enzyme lpp2182 PF00501 AMP-binding enzyme lpp2182 PF13193 AMP-binding enzyme C-terminal domain lpp2185 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III lpp2185 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal lpp2186 PF00550 Phosphopantetheine attachment site lpp2188 PF04116 Fatty acid hydroxylase superfamily lpp2190 PF00005 ABC transporter lpp2190 PF00664 ABC transporter transmembrane region lpp2199 PF00375 Sodium:dicarboxylate symporter family lpp2201 PF09335 SNARE associated Golgi protein lpp2203 PF00117 Glutamine amidotransferase class-I lpp2203 PF00958 GMP synthase C terminal domain lpp2203 PF02540 NAD synthase lpp2204 PF00465 Iron-containing alcohol dehydrogenase lpp2205 PF00171 Aldehyde dehydrogenase family lpp2206 PF00120 Glutamine synthetase, catalytic domain lpp2208 PF05114 Protein of unknown function (DUF692) lpp2210 PF10996 Beta-Casp domain lpp2210 PF00753 Metallo-beta-lactamase superfamily lpp2210 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain lpp2214 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus lpp2214 PF00561 alpha/beta hydrolase fold lpp2215 PF01515 Phosphate acetyl/butaryl transferase lpp2216 PF00871 Acetokinase family lpp2217 PF00226 DnaJ domain lpp2217 PF01556 DnaJ C terminal domain lpp2221 PF01979 Amidohydrolase family lpp2221 PF13382 Adenine deaminase C-terminal domain lpp2227 PF13416 Bacterial extracellular solute-binding protein lpp2228 PF03009 Glycerophosphoryl diester phosphodiesterase family lpp2230 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain lpp2230 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase lpp2231 PF01596 O-methyltransferase lpp2232 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily lpp2234 PF14497 Glutathione S-transferase, C-terminal domain lpp2234 PF02798 Glutathione S-transferase, N-terminal domain lpp2236 PF00152 tRNA synthetases class II (D, K and N) lpp2236 PF01336 OB-fold nucleic acid binding domain lpp2238 PF00005 ABC transporter lpp2239 PF12704 MacB-like periplasmic core domain lpp2239 PF02687 FtsX-like permease family lpp2241 PF13419 Haloacid dehalogenase-like hydrolase lpp2242 PF01479 S4 domain lpp2242 PF00849 RNA pseudouridylate synthase lpp2244 PF10150 Ribonuclease E/G family lpp2244 PF00575 S1 RNA binding domain lpp2244 PF12111 Polyribonucleotide phosphorylase C terminal lpp2247 PF00271 Helicase conserved C-terminal domain lpp2247 PF12137 RNA polymerase recycling family C-terminal lpp2247 PF00176 SNF2 family N-terminal domain lpp2247 PF18339 RapA N-terminal Tudor like domain 1 lpp2247 PF18337 RapA N-terminal Tudor like domain lpp2250 PF02774 Semialdehyde dehydrogenase, dimerisation domain lpp2250 PF01118 Semialdehyde dehydrogenase, NAD binding domain lpp2251 PF01264 Chorismate synthase lpp2252 PF05175 Methyltransferase small domain lpp2253 PF00488 MutS domain V lpp2253 PF01713 Smr domain lpp2254 PF00581 Rhodanese-like domain lpp2255 PF00462 Glutaredoxin lpp2256 PF02556 Preprotein translocase subunit SecB lpp2257 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus lpp2257 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus lpp2258 PF01177 Asp/Glu/Hydantoin racemase lpp2262 PF00701 Dihydrodipicolinate synthetase family lpp2267 PF13677 Membrane MotB of proton-channel complex MotA/MotB lpp2267 PF00691 OmpA family lpp2271 PF00437 Type II/IV secretion system protein lpp2274 PF18073 Rubredoxin metal binding domain lpp2277 PF02609 Exonuclease VII small subunit lpp2278 PF00348 Polyprenyl synthetase lpp2279 PF08241 Methyltransferase domain lpp2280 PF00156 Phosphoribosyl transferase domain lpp2283 PF01488 Shikimate / quinate 5-dehydrogenase lpp2283 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain lpp2283 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain lpp2284 PF03462 PCRF domain lpp2284 PF00472 RF-1 domain lpp2285 PF17827 PrmC N-terminal domain lpp2285 PF13847 Methyltransferase domain lpp2288 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) lpp2289 PF00226 DnaJ domain lpp2289 PF05099 Tellurite resistance protein TerB lpp2291 PF00657 GDSL-like Lipase/Acylhydrolase lpp2294 PF03880 DbpA RNA binding domain lpp2294 PF00271 Helicase conserved C-terminal domain lpp2294 PF00270 DEAD/DEAH box helicase lpp2295 PF00781 Diacylglycerol kinase catalytic domain lpp2296 PF07992 Pyridine nucleotide-disulphide oxidoreductase lpp2296 PF00724 NADH:flavin oxidoreductase / NADH oxidase family lpp2297 PF00080 Copper/zinc superoxide dismutase (SODC) lpp2298 PF02627 Carboxymuconolactone decarboxylase family lpp2299 PF00578 AhpC/TSA family lpp2302 PF00293 NUDIX domain lpp2303 PF06969 HemN C-terminal domain lpp2303 PF04055 Radical SAM superfamily lpp2304 PF01425 Amidase lpp2305 PF02660 Glycerol-3-phosphate acyltransferase lpp2306 PF00814 Glycoprotease family lpp2309 PF10410 DnaB-helicase binding domain of primase lpp2309 PF01807 CHC2 zinc finger lpp2309 PF13662 Toprim domain lpp2309 PF08278 DNA primase DnaG DnaB-binding lpp2309 PF08275 DNA primase catalytic core, N-terminal domain lpp2310 PF03979 Sigma-70 factor, region 1.1 lpp2310 PF04546 Sigma-70, non-essential region lpp2310 PF00140 Sigma-70 factor, region 1.2 lpp2310 PF04542 Sigma-70 region 2 lpp2310 PF04539 Sigma-70 region 3 lpp2310 PF04545 Sigma-70, region 4 lpp2311 PF01610 Transposase lpp2311 PF13542 Helix-turn-helix domain of transposase family ISL3 lpp2311 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 lpp2314 PF07690 Major Facilitator Superfamily lpp2316 PF00561 alpha/beta hydrolase fold lpp2321 PF00313 'Cold-shock' DNA-binding domain lpp2322 PF00106 short chain dehydrogenase lpp2323 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus lpp2323 PF00561 alpha/beta hydrolase fold lpp2324 PF00990 Diguanylate cyclase, GGDEF domain lpp2324 PF03707 Bacterial signalling protein N terminal repeat lpp2324 PF00563 EAL domain lpp2328 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain lpp2328 PF02874 ATP synthase alpha/beta family, beta-barrel domain lpp2331 PF00119 ATP synthase A chain lpp2332 PF00137 ATP synthase subunit C lpp2333 PF00213 ATP synthase delta (OSCP) subunit lpp2333 PF00430 ATP synthase B/B' CF(0) lpp2334 PF00306 ATP synthase alpha/beta chain, C terminal domain lpp2334 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain lpp2337 PF00175 Oxidoreductase NAD-binding domain lpp2337 PF00111 2Fe-2S iron-sulfur cluster binding domain lpp2337 PF00970 Oxidoreductase FAD-binding domain lpp2344 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase lpp2344 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain lpp2345 PF00394 Multicopper oxidase lpp2345 PF07731 Multicopper oxidase lpp2345 PF07732 Multicopper oxidase lpp2352 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion lpp2355 PF00990 Diguanylate cyclase, GGDEF domain lpp2355 PF13185 GAF domain lpp2359 PF02885 Glycosyl transferase family, helical bundle domain lpp2359 PF00591 Glycosyl transferase family, a/b domain lpp2359 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain lpp2360 PF10996 Beta-Casp domain lpp2360 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain lpp2360 PF00753 Metallo-beta-lactamase superfamily lpp2361 PF00873 AcrB/AcrD/AcrF family lpp2362 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion lpp2364 PF00690 Cation transporter/ATPase, N-terminus lpp2364 PF00689 Cation transporting ATPase, C-terminus lpp2370 PF00403 Heavy-metal-associated domain lpp2371 PF00873 AcrB/AcrD/AcrF family lpp2378 PF02599 Global regulator protein family lpp2402 PF13542 Helix-turn-helix domain of transposase family ISL3 lpp2402 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 lpp2402 PF01610 Transposase lpp2405 PF00892 EamA-like transporter family lpp2410 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 lpp2410 PF01610 Transposase lpp2410 PF13542 Helix-turn-helix domain of transposase family ISL3 lpp2421 PF01797 Transposase IS200 like lpp2432 PF02655 ATP-grasp domain lpp2432 PF00206 Lyase lpp2435 PF01613 Flavin reductase like domain lpp2441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family lpp2441 PF03466 LysR substrate binding domain lpp2445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family lpp2445 PF03466 LysR substrate binding domain lpp2446 PF02705 K+ potassium transporter lpp2448 PF06965 Na+/H+ antiporter 1 lpp2450 PF00689 Cation transporting ATPase, C-terminus lpp2450 PF00690 Cation transporter/ATPase, N-terminus lpp2453 PF13520 Amino acid permease lpp2454 PF00141 Peroxidase lpp2457 PF07690 Major Facilitator Superfamily lpp2473 PF00561 alpha/beta hydrolase fold lpp2477 PF00072 Response regulator receiver domain lpp2477 PF00990 Diguanylate cyclase, GGDEF domain lpp2481 PF00144 Beta-lactamase lpp2493 PF16957 Malonate decarboxylase, alpha subunit, transporter lpp2494 PF01039 Carboxyl transferase domain lpp2497 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase lpp2499 PF00149 Calcineurin-like phosphoesterase lpp2499 PF16656 Purple acid Phosphatase, N-terminal domain lpp2505 PF07690 Major Facilitator Superfamily lpp2506 PF03358 NADPH-dependent FMN reductase lpp2507 PF13409 Glutathione S-transferase, N-terminal domain lpp2514 PF01427 D-ala-D-ala dipeptidase lpp2523 PF00072 Response regulator receiver domain lpp2524 PF08446 PAS fold lpp2524 PF00512 His Kinase A (phospho-acceptor) domain lpp2524 PF00360 Phytochrome region lpp2524 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase lpp2524 PF01590 GAF domain lpp2532 PF00374 Nickel-dependent hydrogenase lpp2537 PF01924 Hydrogenase formation hypA family lpp2538 PF01455 HupF/HypC family lpp2539 PF07503 HypF finger lpp2539 PF01300 Telomere recombination lpp2539 PF00708 Acylphosphatase lpp2539 PF17788 HypF Kae1-like domain lpp2540 PF02492 CobW/HypB/UreG, nucleotide-binding domain lpp2541 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA lpp2543 PF00535 Glycosyl transferase family 2 lpp2545 PF00892 EamA-like transporter family lpp2547 PF02627 Carboxymuconolactone decarboxylase family lpp2548 PF01725 Ham1 family lpp2550 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain lpp2550 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III lpp2550 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II lpp2550 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I lpp2551 PF00692 dUTPase lpp2552 PF02441 Flavoprotein lpp2552 PF04127 DNA / pantothenate metabolism flavoprotein lpp2553 PF04002 RadC-like JAB domain lpp2557 PF00571 CBS domain lpp2558 PF08240 Alcohol dehydrogenase GroES-like domain lpp2559 PF00011 Hsp20/alpha crystallin family lpp2562 PF16653 Saccharopine dehydrogenase C-terminal domain lpp2562 PF03435 Saccharopine dehydrogenase NADP binding domain lpp2563 PF00588 SpoU rRNA Methylase family lpp2565 PF04193 PQ loop repeat lpp2568 PF03641 Possible lysine decarboxylase lpp2570 PF07690 Major Facilitator Superfamily lpp2574 PF00072 Response regulator receiver domain lpp2574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase lpp2577 PF12252 Dot/Icm substrate protein lpp2580 PF00873 AcrB/AcrD/AcrF family lpp2581 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion lpp2581 PF00529 HlyD membrane-fusion protein of T1SS lpp2585 PF01037 Lrp/AsnC ligand binding domain lpp2590 PF01168 Alanine racemase, N-terminal domain lpp2590 PF14031 Putative serine dehydratase domain lpp2595 PF00793 DAHP synthetase I family lpp2597 PF01817 Chorismate mutase type II lpp2597 PF00800 Prephenate dehydratase lpp2598 PF00155 Aminotransferase class I and II lpp2599 PF09313 Domain of unknown function (DUF1971) lpp2599 PF03848 Tellurite resistance protein TehB lpp2600 PF02082 Transcriptional regulator lpp2601 PF01152 Bacterial-like globin lpp2602 PF00970 Oxidoreductase FAD-binding domain lpp2602 PF00111 2Fe-2S iron-sulfur cluster binding domain lpp2602 PF00175 Oxidoreductase NAD-binding domain lpp2606 PF01741 Large-conductance mechanosensitive channel, MscL lpp2616 PF01588 Putative tRNA binding domain lpp2621 PF00892 EamA-like transporter family lpp2623 PF07690 Major Facilitator Superfamily lpp2624 PF03330 Lytic transglycolase lpp2624 PF05036 Sporulation related domain lpp2628 PF04343 Protein of unknown function, DUF488 lpp2632 PF02771 Acyl-CoA dehydrogenase, N-terminal domain lpp2632 PF02770 Acyl-CoA dehydrogenase, middle domain lpp2632 PF00441 Acyl-CoA dehydrogenase, C-terminal domain lpp2633 PF02780 Transketolase, C-terminal domain lpp2633 PF02779 Transketolase, pyrimidine binding domain lpp2638 PF01427 D-ala-D-ala dipeptidase lpp2643 PF02195 ParB-like nuclease domain lpp2643 PF17762 HTH domain found in ParB protein lpp2646 PF01189 16S rRNA methyltransferase RsmB/F lpp2646 PF01029 NusB family lpp2647 PF02911 Formyl transferase, C-terminal domain lpp2647 PF00551 Formyl transferase lpp2648 PF01327 Polypeptide deformylase lpp2650 PF17782 DprA winged helix domain lpp2650 PF02481 DNA recombination-mediator protein A lpp2652 PF01751 Toprim domain lpp2652 PF13368 Topoisomerase C-terminal repeat lpp2652 PF01131 DNA topoisomerase lpp2653 PF01757 Acyltransferase family lpp2657 PF12146 Serine aminopeptidase, S33 lpp2660 PF01431 Peptidase family M13 lpp2660 PF05649 Peptidase family M13 lpp2661 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase lpp2662 PF12327 FtsZ family, C-terminal domain lpp2662 PF00091 Tubulin/FtsZ family, GTPase domain lpp2663 PF02491 SHS2 domain inserted in FTSA lpp2664 PF03799 Cell division protein FtsQ lpp2664 PF08478 POTRA domain, FtsQ-type lpp2665 PF01820 D-ala D-ala ligase N-terminus lpp2665 PF07478 D-ala D-ala ligase C-terminus lpp2666 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain lpp2666 PF01565 FAD binding domain lpp2667 PF01225 Mur ligase family, catalytic domain lpp2667 PF08245 Mur ligase middle domain lpp2667 PF02875 Mur ligase family, glutamate ligase domain lpp2668 PF01098 Cell cycle protein lpp2669 PF02875 Mur ligase family, glutamate ligase domain lpp2669 PF08245 Mur ligase middle domain lpp2670 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 lpp2670 PF00953 Glycosyl transferase family 4 lpp2671 PF02875 Mur ligase family, glutamate ligase domain lpp2671 PF01225 Mur ligase family, catalytic domain lpp2671 PF08245 Mur ligase middle domain lpp2672 PF04354 ZipA, C-terminal FtsZ-binding domain lpp2673 PF02463 RecF/RecN/SMC N terminal domain lpp2673 PF06470 SMC proteins Flexible Hinge Domain lpp2677 PF01272 Transcription elongation factor, GreA/GreB, C-term lpp2677 PF03449 Transcription elongation factor, N-terminal lpp2678 PF02142 MGS-like domain lpp2678 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain lpp2678 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain lpp2683 PF03739 Lipopolysaccharide export system permease LptF/LptG lpp2684 PF02789 Cytosol aminopeptidase family, N-terminal domain lpp2684 PF00883 Cytosol aminopeptidase family, catalytic domain lpp2685 PF04364 DNA polymerase III chi subunit, HolC lpp2687 PF02789 Cytosol aminopeptidase family, N-terminal domain lpp2687 PF00883 Cytosol aminopeptidase family, catalytic domain lpp2688 PF03023 Lipid II flippase MurJ lpp2689 PF01649 Ribosomal protein S20 lpp2694 PF03734 L,D-transpeptidase catalytic domain lpp2695 PF00563 EAL domain lpp2695 PF03707 Bacterial signalling protein N terminal repeat lpp2695 PF00990 Diguanylate cyclase, GGDEF domain lpp2698 PF12826 Helix-hairpin-helix motif lpp2698 PF08459 UvrC Helix-hairpin-helix N-terminal lpp2698 PF02151 UvrB/uvrC motif lpp2698 PF01541 GIY-YIG catalytic domain lpp2699 PF00196 Bacterial regulatory proteins, luxR family lpp2699 PF00072 Response regulator receiver domain lpp2700 PF00351 Biopterin-dependent aromatic amino acid hydroxylase lpp2701 PF02464 Competence-damaged protein lpp2701 PF00994 Probable molybdopterin binding domain lpp2701 PF18146 Damage-inducible protein CinA KH domain lpp2702 PF01018 GTP1/OBG lpp2702 PF01926 50S ribosome-binding GTPase lpp2704 PF00829 Ribosomal prokaryotic L21 protein lpp2706 PF01195 Peptidyl-tRNA hydrolase lpp2707 PF06071 Protein of unknown function (DUF933) lpp2707 PF01926 50S ribosome-binding GTPase lpp2711 PF07670 Nucleoside recognition lpp2711 PF02421 Ferrous iron transport protein B lpp2711 PF07664 Ferrous iron transport protein B C terminus lpp2713 PF03969 AFG1-like ATPase lpp2715 PF02548 Ketopantoate hydroxymethyltransferase lpp2716 PF02569 Pantoate-beta-alanine ligase lpp2718 PF02785 Biotin carboxylase C-terminal domain lpp2718 PF00289 Biotin carboxylase, N-terminal domain lpp2718 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain lpp2722 PF18075 FtsX extracellular domain lpp2723 PF00005 ABC transporter lpp2724 PF00448 SRP54-type protein, GTPase domain lpp2724 PF02881 SRP54-type protein, helical bundle domain lpp2725 PF00675 Insulinase (Peptidase family M16) lpp2725 PF05193 Peptidase M16 inactive domain lpp2726 PF05193 Peptidase M16 inactive domain lpp2730 PF00437 Type II/IV secretion system protein lpp2731 PF00565 Staphylococcal nuclease homologue lpp2731 PF02872 5'-nucleotidase, C-terminal domain lpp2731 PF00149 Calcineurin-like phosphoesterase lpp2731 PF00746 LPXTG cell wall anchor motif lpp2732 PF01209 ubiE/COQ5 methyltransferase family lpp2737 PF03737 Aldolase/RraA lpp2737 PF00180 Isocitrate/isopropylmalate dehydrogenase lpp2745 PF00403 Heavy-metal-associated domain lpp2747 PF01209 ubiE/COQ5 methyltransferase family lpp2749 PF01075 Glycosyltransferase family 9 (heptosyltransferase) lpp2752 PF08676 MutL C terminal dimerisation domain lpp2752 PF01119 DNA mismatch repair protein, C-terminal domain lpp2753 PF01520 N-acetylmuramoyl-L-alanine amidase lpp2754 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE lpp2755 PF03853 YjeF-related protein N-terminus lpp2755 PF01256 Carbohydrate kinase lpp2756 PF04386 Stringent starvation protein B lpp2757 PF02798 Glutathione S-transferase, N-terminal domain lpp2757 PF00043 Glutathione S-transferase, C-terminal domain lpp2758 PF02167 Cytochrome C1 family lpp2759 PF00033 Cytochrome b/b6/petB lpp2759 PF00032 Cytochrome b(C-terminal)/b6/petD lpp2760 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal lpp2760 PF00355 Rieske [2Fe-2S] domain lpp2764 PF00216 Bacterial DNA-binding protein lpp2765 PF01588 Putative tRNA binding domain lpp2765 PF03147 Ferredoxin-fold anticodon binding domain lpp2765 PF03484 tRNA synthetase B5 domain lpp2765 PF03483 B3/4 domain lpp2765 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain lpp2766 PF01409 tRNA synthetases class II core domain (F) lpp2766 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain lpp2769 PF00707 Translation initiation factor IF-3, C-terminal domain lpp2769 PF05198 Translation initiation factor IF-3, N-terminal domain lpp2770 PF02824 TGS domain lpp2770 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain lpp2770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) lpp2770 PF03129 Anticodon binding domain lpp2772 PF02594 Uncharacterised ACR, YggU family COG1872 lpp2776 PF04107 Glutamate-cysteine ligase family 2(GCS2) lpp2779 PF00724 NADH:flavin oxidoreductase / NADH oxidase family lpp2779 PF07992 Pyridine nucleotide-disulphide oxidoreductase lpp2782 PF03458 UPF0126 domain lpp2783 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD lpp2784 PF01702 Queuine tRNA-ribosyltransferase lpp2785 PF02600 Disulfide bond formation protein DsbB lpp2786 PF13442 Cytochrome C oxidase, cbb3-type, subunit III lpp2787 PF00155 Aminotransferase class I and II lpp2790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase lpp2790 PF00072 Response regulator receiver domain lpp2791 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain lpp2791 PF03900 Porphobilinogen deaminase, C-terminal domain lpp2792 PF02602 Uroporphyrinogen-III synthase HemD lpp2795 PF01545 Cation efflux family lpp2796 PF02677 Epoxyqueuosine reductase QueH lpp2797 PF00929 Exonuclease lpp2798 PF12627 Probable RNA and SrmB- binding site of polymerase A lpp2798 PF01743 Poly A polymerase head domain lpp2798 PF01966 HD domain lpp2799 PF03193 RsgA GTPase lpp2802 PF12169 DNA polymerase III subunits gamma and tau domain III lpp2802 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding lpp2802 PF12170 DNA polymerase III tau subunit V interacting with alpha lpp2803 PF02575 YbaB/EbfC DNA-binding family lpp2804 PF02132 RecR protein lpp2804 PF13662 Toprim domain lpp2808 PF00486 Transcriptional regulatory protein, C terminal lpp2808 PF00072 Response regulator receiver domain lpp2811 PF01595 Cyclin M transmembrane N-terminal domain lpp2811 PF03471 Transporter associated domain lpp2811 PF00571 CBS domain lpp2812 PF00719 Inorganic pyrophosphatase lpp2813 PF01230 HIT domain lpp2814 PF01227 GTP cyclohydrolase I lpp2815 PF07995 Glucose / Sorbosone dehydrogenase lpp2816 PF00013 KH domain lpp2816 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain lpp2816 PF03725 3' exoribonuclease family, domain 2 lpp2816 PF00575 S1 RNA binding domain lpp2816 PF01138 3' exoribonuclease family, domain 1 lpp2818 PF09157 Pseudouridine synthase II TruB, C-terminal lpp2818 PF01509 TruB family pseudouridylate synthase (N terminal domain) lpp2818 PF16198 tRNA pseudouridylate synthase B C-terminal domain lpp2819 PF02033 Ribosome-binding factor A lpp2820 PF00009 Elongation factor Tu GTP binding domain lpp2820 PF11987 Translation-initiation factor 2 lpp2820 PF08364 Bacterial translation initiation factor IF-2 associated region lpp2820 PF04760 Translation initiation factor IF-2, N-terminal region lpp2821 PF08529 NusA N-terminal domain lpp2821 PF13184 NusA-like KH domain lpp2822 PF02576 RimP N-terminal domain lpp2822 PF17384 RimP C-terminal SH3 domain lpp2824 PF00361 Proton-conducting membrane transporter lpp2824 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus lpp2825 PF00361 Proton-conducting membrane transporter lpp2825 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus lpp2826 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L lpp2827 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 lpp2828 PF12838 4Fe-4S dicluster domain lpp2829 PF00146 NADH dehydrogenase lpp2830 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal lpp2830 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region lpp2830 PF00384 Molybdopterin oxidoreductase lpp2831 PF10531 SLBB domain lpp2831 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region lpp2831 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit lpp2833 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit lpp2834 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit lpp2835 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit lpp2836 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 lpp2837 PF03840 Preprotein translocase SecG subunit lpp2838 PF00121 Triosephosphate isomerase lpp2841 PF00809 Pterin binding enzyme lpp2842 PF17862 AAA+ lid domain lpp2842 PF01434 Peptidase family M41 lpp2842 PF06480 FtsH Extracellular lpp2842 PF00004 ATPase family associated with various cellular activities (AAA) lpp2843 PF01728 FtsJ-like methyltransferase lpp2844 PF01985 CRS1 / YhbY (CRM) domain lpp2845 PF01757 Acyltransferase family lpp2847 PF01066 CDP-alcohol phosphatidyltransferase lpp2848 PF00308 Bacterial dnaA protein lpp2855 PF11940 Domain of unknown function (DUF3458) Ig-like fold lpp2855 PF17432 Domain of unknown function (DUF3458_C) ARM repeats lpp2855 PF01433 Peptidase family M1 domain lpp2856 PF08298 PrkA AAA domain lpp2856 PF06798 PrkA serine protein kinase C-terminal domain lpp2857 PF04285 Protein of unknown function (DUF444) lpp2859 PF00117 Glutamine amidotransferase class-I lpp2860 PF00701 Dihydrodipicolinate synthetase family lpp2862 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family lpp2862 PF03466 LysR substrate binding domain lpp2868 PF13361 UvrD-like helicase C-terminal domain lpp2868 PF00580 UvrD/REP helicase N-terminal domain lpp2870 PF01430 Hsp33 protein lpp2873 PF00248 Aldo/keto reductase family lpp2874 PF03853 YjeF-related protein N-terminus lpp2876 PF01513 ATP-NAD kinase lpp2877 PF02463 RecF/RecN/SMC N terminal domain lpp2880 PF00873 AcrB/AcrD/AcrF family lpp2884 PF00665 Integrase core domain lpp2884 PF02796 Helix-turn-helix domain of resolvase lpp2885 PF01695 IstB-like ATP binding protein lpp2887 PF04564 U-box domain lpp2888 PF01734 Patatin-like phospholipase lpp2888 PF00027 Cyclic nucleotide-binding domain lpp2890 PF03061 Thioesterase superfamily lpp2891 PF17674 HHH domain lpp2891 PF09371 Tex-like protein N-terminal domain lpp2891 PF16921 Tex protein YqgF-like domain lpp2891 PF00575 S1 RNA binding domain lpp2892 PF05724 Thiopurine S-methyltransferase (TPMT) lpp2893 PF01380 SIS domain lpp2896 PF01541 GIY-YIG catalytic domain lpp2898 PF01668 SmpB protein lpp2899 PF00578 AhpC/TSA family lpp2900 PF07690 Major Facilitator Superfamily lpp2916 PF01882 Protein of unknown function DUF58 lpp2917 PF07726 ATPase family associated with various cellular activities (AAA) lpp2917 PF17863 AAA lid domain lpp2919 PF01207 Dihydrouridine synthase (Dus) lpp2924 PF00271 Helicase conserved C-terminal domain lpp2924 PF00270 DEAD/DEAH box helicase lpp2924 PF17764 3′ DNA-binding domain (3′BD) lpp2924 PF18074 Primosomal protein N C-terminal domain lpp2924 PF18319 PriA DNA helicase Cys-rich region (CRR) domain lpp2927 PF00303 Thymidylate synthase lpp2928 PF01790 Prolipoprotein diacylglyceryl transferase lpp2929 PF01925 Sulfite exporter TauE/SafE lpp2930 PF05524 PEP-utilising enzyme, N-terminal lpp2930 PF00391 PEP-utilising enzyme, mobile domain lpp2930 PF02896 PEP-utilising enzyme, TIM barrel domain lpp2930 PF01590 GAF domain lpp2931 PF00293 NUDIX domain lpp2932 PF00710 Asparaginase, N-terminal lpp2932 PF17763 Glutaminase/Asparaginase C-terminal domain lpp2934 PF00132 Bacterial transferase hexapeptide (six repeats) lpp2934 PF12804 MobA-like NTP transferase domain lpp2935 PF03600 Citrate transporter lpp2937 PF01544 CorA-like Mg2+ transporter protein lpp2939 PF00633 Helix-hairpin-helix motif lpp2939 PF10576 Iron-sulfur binding domain of endonuclease III lpp2939 PF00730 HhH-GPD superfamily base excision DNA repair protein lpp2940 PF04060 Putative Fe-S cluster lpp2941 PF01588 Putative tRNA binding domain lpp2941 PF09334 tRNA synthetases class I (M) lpp2945 PF06508 Queuosine biosynthesis protein QueC lpp2946 PF01050 Mannose-6-phosphate isomerase lpp2946 PF00483 Nucleotidyl transferase lpp2948 PF13932 GidA associated domain lpp2948 PF01134 Glucose inhibited division protein A lpp2949 PF02527 rRNA small subunit methyltransferase G lpp2950 PF13614 AAA domain lpp2951 PF02195 ParB-like nuclease domain lpp2951 PF17762 HTH domain found in ParB protein lpp2953 PF13340 Putative transposase of IS4/5 family (DUF4096) lpp2956 PF13302 Acetyltransferase (GNAT) domain lpp2956 PF03352 Methyladenine glycosylase lpp2956 PF00958 GMP synthase C terminal domain lpp2956 PF13673 Acetyltransferase (GNAT) domain lpp2956 PF00117 Glutamine amidotransferase class-I lpp2959 PF00510 Cytochrome c oxidase subunit III lpp2960 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 lpp2962 PF00116 Cytochrome C oxidase subunit II, periplasmic domain lpp2962 PF02790 Cytochrome C oxidase subunit II, transmembrane domain lpp2966 PF01810 LysE type translocator lpp2970 PF01209 ubiE/COQ5 methyltransferase family lpp2972 PF03109 ABC1 family lpp2973 PF02416 mttA/Hcf106 family lpp2979 PF02728 Copper amine oxidase, N3 domain lpp2979 PF01179 Copper amine oxidase, enzyme domain lpp2989 PF00005 ABC transporter lpp2989 PF02687 FtsX-like permease family lpp2989 PF12704 MacB-like periplasmic core domain lpp2997 PF00902 Sec-independent protein translocase protein (TatC) lpp3000 PF00111 2Fe-2S iron-sulfur cluster binding domain lpp3000 PF00175 Oxidoreductase NAD-binding domain lpp3000 PF00970 Oxidoreductase FAD-binding domain lpp3001 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase lpp3002 PF07497 Rho termination factor, RNA-binding domain lpp3002 PF07498 Rho termination factor, N-terminal domain lpp3002 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain lpp3004 PF04452 RNA methyltransferase lpp3005 PF10415 Fumarase C C-terminus lpp3005 PF00206 Lyase lpp3012 PF03279 Bacterial lipid A biosynthesis acyltransferase lpp3014 PF02684 Lipid-A-disaccharide synthetase lpp3015 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD lpp3015 PF00132 Bacterial transferase hexapeptide (six repeats) lpp3015 PF14602 Hexapeptide repeat of succinyl-transferase lpp3019 PF08241 Methyltransferase domain lpp3020 PF00534 Glycosyl transferases group 1 lpp3020 PF13439 Glycosyltransferase Family 4 lpp3022 PF00291 Pyridoxal-phosphate dependent enzyme lpp3022 PF00571 CBS domain lpp3027 PF00692 dUTPase lpp3028 PF01145 SPFH domain / Band 7 family lpp3028 PF16200 C-terminal region of band_7 lpp3034 PF01389 OmpA-like transmembrane domain lpp3034 PF00691 OmpA family lpp3035 PF01979 Amidohydrolase family lpp3036 PF00929 Exonuclease lpp3038 PF00462 Glutaredoxin lpp3040 PF00202 Aminotransferase class-III lpp3041 PF00753 Metallo-beta-lactamase superfamily lpp3043 PF00390 Malic enzyme, N-terminal domain lpp3043 PF03949 Malic enzyme, NAD binding domain lpp3044 PF01300 Telomere recombination lpp3046 PF02666 Phosphatidylserine decarboxylase lpp3049 PF03413 Peptidase propeptide and YPEB domain lpp3049 PF01447 Thermolysin metallopeptidase, catalytic domain lpp3049 PF02868 Thermolysin metallopeptidase, alpha-helical domain lpp3049 PF07504 Fungalysin/Thermolysin Propeptide Motif lpp3049 PF04151 Bacterial pre-peptidase C-terminal domain lpp3051 PF00521 DNA gyrase/topoisomerase IV, subunit A lpp3051 PF03989 DNA gyrase C-terminal domain, beta-propeller lpp3052 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain lpp3052 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain lpp3053 PF02874 ATP synthase alpha/beta family, beta-barrel domain lpp3053 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain lpp3054 PF00231 ATP synthase lpp3055 PF00306 ATP synthase alpha/beta chain, C terminal domain lpp3055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain lpp3055 PF02874 ATP synthase alpha/beta family, beta-barrel domain lpp3056 PF00213 ATP synthase delta (OSCP) subunit lpp3058 PF00137 ATP synthase subunit C lpp3059 PF00119 ATP synthase A chain lpp3060 PF03899 ATP synthase I chain lpp3062 PF04972 BON domain lpp3063 PF04972 BON domain lpp3064 PF13580 SIS domain lpp3065 PF02021 Uncharacterised protein family UPF0102 lpp3066 PF04348 LppC putative lipoprotein lpp3067 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases lpp3068 PF00487 Fatty acid desaturase lpp3073 PF01926 50S ribosome-binding GTPase lpp3073 PF10396 GTP-binding protein TrmE N-terminus lpp3073 PF12631 MnmE helical domain lpp3074 PF02096 60Kd inner membrane protein lpp3074 PF14849 YidC periplasmic domain lpp3075 PF01809 Putative membrane protein insertion efficiency factor lpp3076 PF00825 Ribonuclease P lpp3077 PF00468 Ribosomal protein L34 plpp0002 PF13614 AAA domain plpp0006 PF00854 POT family plpp0012 PF00899 ThiF family plpp0013 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding plpp0016 PF02599 Global regulator protein family plpp0017 PF05818 Enterobacterial TraT complement resistance protein plpp0020 PF02796 Helix-turn-helix domain of resolvase plpp0020 PF00665 Integrase core domain plpp0021 PF01695 IstB-like ATP binding protein plpp0026 PF03743 Bacterial conjugation TrbI-like protein plpp0028 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer plpp0031 PF06834 TraU protein plpp0032 PF09673 Type-F conjugative transfer system pilin assembly protein plpp0033 PF06986 Type-1V conjugative transfer system mating pair stabilisation plpp0034 PF13728 F plasmid transfer operon protein plpp0036 PF06122 Conjugative relaxosome accessory transposon protein plpp0038 PF10412 Type IV secretion-system coupling protein DNA-binding domain plpp0038 PF12615 F sex factor protein N terminal plpp0047 PF03230 Antirestriction protein plpp0052 PF00239 Resolvase, N terminal domain plpp0052 PF02796 Helix-turn-helix domain of resolvase plpp0054 PF00005 ABC transporter plpp0054 PF00664 ABC transporter transmembrane region plpp0067 PF00005 ABC transporter plpp0067 PF00664 ABC transporter transmembrane region plpp0069 PF04229 GrpB protein plpp0069 PF13673 Acetyltransferase (GNAT) domain plpp0073 PF13411 MerR HTH family regulatory protein plpp0073 PF07739 TipAS antibiotic-recognition domain plpp0076 PF00905 Penicillin binding protein transpeptidase domain plpp0077 PF00905 Penicillin binding protein transpeptidase domain plpp0078 PF12697 Alpha/beta hydrolase family plpp0081 PF01872 RibD C-terminal domain plpp0084 PF01243 Pyridoxamine 5'-phosphate oxidase plpp0084 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region plpp0088 PF07739 TipAS antibiotic-recognition domain plpp0088 PF13411 MerR HTH family regulatory protein plpp0089 PF05016 ParE toxin of type II toxin-antitoxin system, parDE plpp0097 PF00072 Response regulator receiver domain plpp0097 PF00486 Transcriptional regulatory protein, C terminal plpp0099 PF00672 HAMP domain plpp0099 PF16527 Two-component sensor protein CpxA, periplasmic domain plpp0099 PF00512 His Kinase A (phospho-acceptor) domain plpp0099 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase plpp0102 PF02594 Uncharacterised ACR, YggU family COG1872 plpp0104 PF13280 WYL domain plpp0104 PF08279 HTH domain plpp0106 PF01878 EVE domain plpp0111 PF01810 LysE type translocator plpp0116 PF01636 Phosphotransferase enzyme family plpp0121 PF00583 Acetyltransferase (GNAT) family plpp0123 PF17676 LD-carboxypeptidase C-terminal domain plpp0123 PF02016 LD-carboxypeptidase N-terminal domain plpp0131 PF01411 tRNA synthetases class II (A) plpp0131 PF02272 DHHA1 domain plpp0131 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain plpp0132 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) plpp0132 PF03129 Anticodon binding domain plpp0132 PF04073 Aminoacyl-tRNA editing domain plpp0134 PF01381 Helix-turn-helix plpp0134 PF07883 Cupin domain plpp0135 PF01636 Phosphotransferase enzyme family plpp0136 PF13302 Acetyltransferase (GNAT) domain plpp0139 PF02631 RecX family plpp0140 PF02899 Phage integrase, N-terminal SAM-like domain plpp0140 PF00589 Phage integrase family