locus-tag class description LIL_10001 PF11638 DnaA N-terminal domain LIL_10001 PF08299 Bacterial dnaA protein helix-turn-helix LIL_10001 PF00308 Bacterial dnaA protein LIL_10003 PF02767 DNA polymerase III beta subunit, central domain LIL_10003 PF00712 DNA polymerase III beta subunit, N-terminal domain LIL_10003 PF02768 DNA polymerase III beta subunit, C-terminal domain LIL_10004 PF02463 RecF/RecN/SMC N terminal domain LIL_10006 PF00204 DNA gyrase B LIL_10006 PF00986 DNA gyrase B subunit, carboxyl terminus LIL_10006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10006 PF01751 Toprim domain LIL_10007 PF03989 DNA gyrase C-terminal domain, beta-propeller LIL_10007 PF00521 DNA gyrase/topoisomerase IV, subunit A LIL_10008 PF01207 Dihydrouridine synthase (Dus) LIL_10016 PF02545 Maf-like protein LIL_10020 PF01300 Telomere recombination LIL_10024 PF01706 FliG C-terminal domain LIL_10024 PF14841 FliG middle domain LIL_10024 PF14842 FliG N-terminal domain LIL_10025 PF00672 HAMP domain LIL_10025 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_10031 PF00459 Inositol monophosphatase family LIL_10033 PF08532 Beta-galactosidase trimerisation domain LIL_10033 PF08533 Beta-galactosidase C-terminal domain LIL_10033 PF02449 Beta-galactosidase LIL_10034 PF01430 Hsp33 protein LIL_10035 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LIL_10037 PF00773 RNB domain LIL_10037 PF17876 Cold shock domain LIL_10037 PF08206 Ribonuclease B OB domain LIL_10037 PF00575 S1 RNA binding domain LIL_10039 PF05199 GMC oxidoreductase LIL_10039 PF00732 GMC oxidoreductase LIL_10042 PF01380 SIS domain LIL_10042 PF00571 CBS domain LIL_10045 PF08447 PAS fold LIL_10045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_10045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_10045 PF08447 PAS fold LIL_10047 PF01370 NAD dependent epimerase/dehydratase family LIL_10048 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LIL_10048 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LIL_10048 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LIL_10050 PF03129 Anticodon binding domain LIL_10050 PF13393 Histidyl-tRNA synthetase LIL_10053 PF00809 Pterin binding enzyme LIL_10056 PF03330 Lytic transglycolase LIL_10057 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_10057 PF06426 Serine acetyltransferase, N-terminal LIL_10060 PF01554 MatE LIL_10061 PF00375 Sodium:dicarboxylate symporter family LIL_10065 PF00672 HAMP domain LIL_10065 PF00512 His Kinase A (phospho-acceptor) domain LIL_10065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10068 PF00378 Enoyl-CoA hydratase/isomerase LIL_10073 PF01266 FAD dependent oxidoreductase LIL_10075 PF08241 Methyltransferase domain LIL_10076 PF01678 Diaminopimelate epimerase LIL_10089 PF05958 tRNA (Uracil-5-)-methyltransferase LIL_10095 PF00753 Metallo-beta-lactamase superfamily LIL_10097 PF00501 AMP-binding enzyme LIL_10099 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LIL_10101 PF04715 Anthranilate synthase component I, N terminal region LIL_10101 PF00425 chorismate binding enzyme LIL_10102 PF12282 Signal transduction histidine kinase LIL_10102 PF07568 Histidine kinase LIL_10102 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10104 PF01053 Cys/Met metabolism PLP-dependent enzyme LIL_10105 PF03462 PCRF domain LIL_10105 PF00472 RF-1 domain LIL_10113 PF00475 Imidazoleglycerol-phosphate dehydratase LIL_10114 PF00117 Glutamine amidotransferase class-I LIL_10115 PF00977 Histidine biosynthesis protein LIL_10116 PF06965 Na+/H+ antiporter 1 LIL_10116 PF13462 Thioredoxin LIL_10119 PF02581 Thiamine monophosphate synthase LIL_10119 PF08543 Phosphomethylpyrimidine kinase LIL_10120 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LIL_10121 PF00512 His Kinase A (phospho-acceptor) domain LIL_10121 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10122 PF16745 RsgA N-terminal domain LIL_10122 PF03193 RsgA GTPase LIL_10127 PF02390 Putative methyltransferase LIL_10131 PF01926 50S ribosome-binding GTPase LIL_10132 PF01171 PP-loop family LIL_10133 PF00158 Sigma-54 interaction domain LIL_10133 PF02954 Bacterial regulatory protein, Fis family LIL_10133 PF01590 GAF domain LIL_10137 PF00664 ABC transporter transmembrane region LIL_10137 PF00005 ABC transporter LIL_10138 PF08335 GlnD PII-uridylyltransferase LIL_10138 PF01966 HD domain LIL_10138 PF01909 Nucleotidyltransferase domain LIL_10142 PF01264 Chorismate synthase LIL_10143 PF00384 Molybdopterin oxidoreductase LIL_10143 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LIL_10143 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal LIL_10144 PF12838 4Fe-4S dicluster domain LIL_10146 PF08281 Sigma-70, region 4 LIL_10146 PF04542 Sigma-70 region 2 LIL_10149 PF01323 DSBA-like thioredoxin domain LIL_10150 PF00155 Aminotransferase class I and II LIL_10152 PF00468 Ribosomal protein L34 LIL_10153 PF01809 Putative membrane protein insertion efficiency factor LIL_10154 PF02096 60Kd inner membrane protein LIL_10155 PF01424 R3H domain LIL_10155 PF14804 Jag N-terminus LIL_10156 PF10396 GTP-binding protein TrmE N-terminus LIL_10156 PF12631 MnmE helical domain LIL_10156 PF01926 50S ribosome-binding GTPase LIL_10157 PF00390 Malic enzyme, N-terminal domain LIL_10157 PF03949 Malic enzyme, NAD binding domain LIL_10157 PF01515 Phosphate acetyl/butaryl transferase LIL_10159 PF10415 Fumarase C C-terminus LIL_10159 PF00206 Lyase LIL_10192 PF01479 S4 domain LIL_10192 PF00849 RNA pseudouridylate synthase LIL_10193 PF00795 Carbon-nitrogen hydrolase LIL_10198 PF00459 Inositol monophosphatase family LIL_10203 PF16363 GDP-mannose 4,6 dehydratase LIL_10205 PF01040 UbiA prenyltransferase family LIL_10209 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LIL_10210 PF00115 Cytochrome C and Quinol oxidase polypeptide I LIL_10211 PF00510 Cytochrome c oxidase subunit III LIL_10216 PF01293 Phosphoenolpyruvate carboxykinase LIL_10220 PF13614 AAA domain LIL_10221 PF02637 GatB domain LIL_10221 PF02934 GatB/GatE catalytic domain LIL_10222 PF07733 Bacterial DNA polymerase III alpha NTPase domain LIL_10222 PF01336 OB-fold nucleic acid binding domain LIL_10222 PF02811 PHP domain LIL_10222 PF14579 Helix-hairpin-helix motif LIL_10222 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LIL_10223 PF01551 Peptidase family M23 LIL_10226 PF05598 Transposase domain (DUF772) LIL_10232 PF02687 FtsX-like permease family LIL_10232 PF12704 MacB-like periplasmic core domain LIL_10233 PF00005 ABC transporter LIL_10237 PF13545 Crp-like helix-turn-helix domain LIL_10237 PF00027 Cyclic nucleotide-binding domain LIL_10238 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain LIL_10238 PF00730 HhH-GPD superfamily base excision DNA repair protein LIL_10241 PF09844 Uncharacterized conserved protein (COG2071) LIL_10245 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_10245 PF00672 HAMP domain LIL_10248 PF05958 tRNA (Uracil-5-)-methyltransferase LIL_10252 PF00571 CBS domain LIL_10253 PF00226 DnaJ domain LIL_10253 PF01556 DnaJ C terminal domain LIL_10253 PF00684 DnaJ central domain LIL_10254 PF13722 5TM C-terminal transporter carbon starvation CstA LIL_10254 PF02554 Carbon starvation protein CstA LIL_10265 PF05175 Methyltransferase small domain LIL_10265 PF17827 PrmC N-terminal domain LIL_10266 PF00027 Cyclic nucleotide-binding domain LIL_10266 PF13545 Crp-like helix-turn-helix domain LIL_10268 PF01979 Amidohydrolase family LIL_10269 PF05257 CHAP domain LIL_10269 PF01476 LysM domain LIL_10270 PF00009 Elongation factor Tu GTP binding domain LIL_10270 PF14492 Elongation Factor G, domain II LIL_10270 PF00679 Elongation factor G C-terminus LIL_10270 PF03144 Elongation factor Tu domain 2 LIL_10270 PF03764 Elongation factor G, domain IV LIL_10272 PF02386 Cation transport protein LIL_10281 PF00698 Acyl transferase domain LIL_10281 PF08240 Alcohol dehydrogenase GroES-like domain LIL_10281 PF08990 Erythronolide synthase docking LIL_10281 PF00109 Beta-ketoacyl synthase, N-terminal domain LIL_10281 PF16197 Ketoacyl-synthetase C-terminal extension LIL_10281 PF08659 KR domain LIL_10281 PF00550 Phosphopantetheine attachment site LIL_10281 PF14765 Polyketide synthase dehydratase LIL_10281 PF02801 Beta-ketoacyl synthase, C-terminal domain LIL_10282 PF00348 Polyprenyl synthetase LIL_10283 PF01728 FtsJ-like methyltransferase LIL_10283 PF01479 S4 domain LIL_10284 PF01757 Acyltransferase family LIL_10285 PF01804 Penicillin amidase LIL_10287 PF01242 6-pyruvoyl tetrahydropterin synthase LIL_10288 PF06508 Queuosine biosynthesis protein QueC LIL_10289 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LIL_10290 PF02233 NAD(P) transhydrogenase beta subunit LIL_10294 PF03009 Glycerophosphoryl diester phosphodiesterase family LIL_10295 PF03928 Haem-degrading LIL_10298 PF02049 Flagellar hook-basal body complex protein FliE LIL_10299 PF00460 Flagella basal body rod protein LIL_10299 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIL_10300 PF00460 Flagella basal body rod protein LIL_10305 PF04304 Protein of unknown function (DUF454) LIL_10310 PF02347 Glycine cleavage system P-protein LIL_10311 PF01597 Glycine cleavage H-protein LIL_10312 PF08669 Glycine cleavage T-protein C-terminal barrel domain LIL_10312 PF01571 Aminomethyltransferase folate-binding domain LIL_10316 PF00266 Aminotransferase class-V LIL_10318 PF02502 Ribose/Galactose Isomerase LIL_10325 PF01676 Metalloenzyme superfamily LIL_10325 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LIL_10333 PF02397 Bacterial sugar transferase LIL_10337 PF00919 Uncharacterized protein family UPF0004 LIL_10337 PF04055 Radical SAM superfamily LIL_10340 PF00004 ATPase family associated with various cellular activities (AAA) LIL_10340 PF07724 AAA domain (Cdc48 subfamily) LIL_10340 PF17871 AAA lid domain LIL_10340 PF02861 Clp amino terminal domain, pathogenicity island component LIL_10340 PF10431 C-terminal, D2-small domain, of ClpB protein LIL_10341 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain LIL_10345 PF01740 STAS domain LIL_10351 PF00005 ABC transporter LIL_10353 PF08668 HDOD domain LIL_10354 PF00398 Ribosomal RNA adenine dimethylase LIL_10357 PF00579 tRNA synthetases class I (W and Y) LIL_10360 PF00766 Electron transfer flavoprotein FAD-binding domain LIL_10360 PF01012 Electron transfer flavoprotein domain LIL_10361 PF01012 Electron transfer flavoprotein domain LIL_10363 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_10363 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_10363 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_10364 PF01596 O-methyltransferase LIL_10372 PF03976 Polyphosphate kinase 2 (PPK2) LIL_10381 PF01676 Metalloenzyme superfamily LIL_10381 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LIL_10389 PF12848 ABC transporter LIL_10389 PF00005 ABC transporter LIL_10391 PF00149 Calcineurin-like phosphoesterase LIL_10391 PF10518 TAT (twin-arginine translocation) pathway signal sequence LIL_10392 PF13276 HTH-like domain LIL_10392 PF13333 Integrase core domain LIL_10392 PF00665 Integrase core domain LIL_10395 PF02909 Tetracyclin repressor-like, C-terminal domain LIL_10395 PF00440 Bacterial regulatory proteins, tetR family LIL_10396 PF00108 Thiolase, N-terminal domain LIL_10396 PF02803 Thiolase, C-terminal domain LIL_10402 PF00885 6,7-dimethyl-8-ribityllumazine synthase LIL_10403 PF01029 NusB family LIL_10423 PF13361 UvrD-like helicase C-terminal domain LIL_10423 PF00580 UvrD/REP helicase N-terminal domain LIL_10429 PF08544 GHMP kinases C terminal LIL_10430 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_10430 PF00483 Nucleotidyl transferase LIL_10431 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LIL_10431 PF14572 Phosphoribosyl synthetase-associated domain LIL_10432 PF01386 Ribosomal L25p family LIL_10432 PF14693 Ribosomal protein TL5, C-terminal domain LIL_10433 PF01195 Peptidyl-tRNA hydrolase LIL_10434 PF06480 FtsH Extracellular LIL_10434 PF01434 Peptidase family M41 LIL_10434 PF17862 AAA+ lid domain LIL_10434 PF00004 ATPase family associated with various cellular activities (AAA) LIL_10442 PF00543 Nitrogen regulatory protein P-II LIL_10443 PF00909 Ammonium Transporter Family LIL_10448 PF01039 Carboxyl transferase domain LIL_10449 PF12804 MobA-like NTP transferase domain LIL_10449 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_10450 PF01380 SIS domain LIL_10451 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LIL_10451 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LIL_10451 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LIL_10451 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LIL_10452 PF01649 Ribosomal protein S20 LIL_10456 PF00535 Glycosyl transferase family 2 LIL_10463 PF12697 Alpha/beta hydrolase family LIL_10464 PF12729 Four helix bundle sensory module for signal transduction LIL_10464 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_10464 PF00672 HAMP domain LIL_10465 PF00962 Adenosine/AMP deaminase LIL_10466 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIL_10470 PF02368 Bacterial Ig-like domain (group 2) LIL_10470 PF11999 Protein of unknown function (DUF3494) LIL_10471 PF02368 Bacterial Ig-like domain (group 2) LIL_10471 PF11999 Protein of unknown function (DUF3494) LIL_10472 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LIL_10476 PF03462 PCRF domain LIL_10476 PF00472 RF-1 domain LIL_10478 PF02843 Phosphoribosylglycinamide synthetase, C domain LIL_10478 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LIL_10478 PF02844 Phosphoribosylglycinamide synthetase, N domain LIL_10479 PF10458 Valyl tRNA synthetase tRNA binding arm LIL_10479 PF00133 tRNA synthetases class I (I, L, M and V) LIL_10479 PF08264 Anticodon-binding domain of tRNA LIL_10481 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LIL_10483 PF13302 Acetyltransferase (GNAT) domain LIL_10484 PF10502 Signal peptidase, peptidase S26 LIL_10490 PF00291 Pyridoxal-phosphate dependent enzyme LIL_10491 PF08668 HDOD domain LIL_10496 PF00873 AcrB/AcrD/AcrF family LIL_10497 PF00873 AcrB/AcrD/AcrF family LIL_10514 PF00149 Calcineurin-like phosphoesterase LIL_10514 PF00746 LPXTG cell wall anchor motif LIL_10514 PF00565 Staphylococcal nuclease homologue LIL_10514 PF02872 5'-nucleotidase, C-terminal domain LIL_10519 PF13603 Leucyl-tRNA synthetase, Domain 2 LIL_10519 PF08264 Anticodon-binding domain of tRNA LIL_10519 PF00133 tRNA synthetases class I (I, L, M and V) LIL_10521 PF00005 ABC transporter LIL_10525 PF02622 Uncharacterized ACR, COG1678 LIL_10526 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LIL_10526 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LIL_10527 PF00226 DnaJ domain LIL_10527 PF01556 DnaJ C terminal domain LIL_10527 PF00684 DnaJ central domain LIL_10528 PF00012 Hsp70 protein LIL_10529 PF01025 GrpE LIL_10530 PF01628 HrcA protein C terminal domain LIL_10532 PF03717 Penicillin-binding Protein dimerisation domain LIL_10532 PF00905 Penicillin binding protein transpeptidase domain LIL_10535 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LIL_10536 PF00664 ABC transporter transmembrane region LIL_10536 PF00005 ABC transporter LIL_10537 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIL_10538 PF00905 Penicillin binding protein transpeptidase domain LIL_10538 PF00912 Transglycosylase LIL_10542 PF00691 OmpA family LIL_10543 PF12848 ABC transporter LIL_10543 PF00005 ABC transporter LIL_10546 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_10548 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_10548 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_10548 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_10550 PF01625 Peptide methionine sulfoxide reductase LIL_10554 PF03167 Uracil DNA glycosylase superfamily LIL_10555 PF01725 Ham1 family LIL_10559 PF00072 Response regulator receiver domain LIL_10559 PF00672 HAMP domain LIL_10559 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LIL_10559 PF00512 His Kinase A (phospho-acceptor) domain LIL_10559 PF01627 Hpt domain LIL_10559 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10560 PF12697 Alpha/beta hydrolase family LIL_10565 PF00072 Response regulator receiver domain LIL_10565 PF09308 LuxQ, periplasmic LIL_10565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10565 PF00512 His Kinase A (phospho-acceptor) domain LIL_10571 PF02630 SCO1/SenC LIL_10572 PF00436 Single-strand binding protein family LIL_10578 PF03447 Homoserine dehydrogenase, NAD binding domain LIL_10578 PF01842 ACT domain LIL_10578 PF00742 Homoserine dehydrogenase LIL_10581 PF01548 Transposase LIL_10582 PF01979 Amidohydrolase family LIL_10584 PF01926 50S ribosome-binding GTPase LIL_10584 PF16360 GTP-binding GTPase Middle Region LIL_10584 PF13167 GTP-binding GTPase N-terminal LIL_10588 PF00664 ABC transporter transmembrane region LIL_10588 PF00005 ABC transporter LIL_10589 PF02885 Glycosyl transferase family, helical bundle domain LIL_10589 PF00117 Glutamine amidotransferase class-I LIL_10589 PF00591 Glycosyl transferase family, a/b domain LIL_10591 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_10591 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_10591 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_10594 PF01367 5'-3' exonuclease, C-terminal SAM fold LIL_10594 PF01612 3'-5' exonuclease LIL_10594 PF00476 DNA polymerase family A LIL_10594 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LIL_10595 PF00534 Glycosyl transferases group 1 LIL_10596 PF13230 Glutamine amidotransferases class-II LIL_10597 PF00909 Ammonium Transporter Family LIL_10597 PF00672 HAMP domain LIL_10600 PF03091 CutA1 divalent ion tolerance protein LIL_10601 PF00691 OmpA family LIL_10601 PF13505 Outer membrane protein beta-barrel domain LIL_10612 PF13452 N-terminal half of MaoC dehydratase LIL_10614 PF00884 Sulfatase LIL_10617 PF00210 Ferritin-like domain LIL_10618 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_10619 PF00004 ATPase family associated with various cellular activities (AAA) LIL_10619 PF02190 ATP-dependent protease La (LON) substrate-binding domain LIL_10619 PF05362 Lon protease (S16) C-terminal proteolytic domain LIL_10621 PF02542 YgbB family LIL_10623 PF00583 Acetyltransferase (GNAT) family LIL_10626 PF02481 DNA recombination-mediator protein A LIL_10628 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LIL_10631 PF06289 Flagellar and Swarming motility proteins LIL_10632 PF01618 MotA/TolQ/ExbB proton channel family LIL_10633 PF00691 OmpA family LIL_10633 PF13677 Membrane MotB of proton-channel complex MotA/MotB LIL_10635 PF02348 Cytidylyltransferase LIL_10636 PF01740 STAS domain LIL_10639 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LIL_10639 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LIL_10641 PF00005 ABC transporter LIL_10642 PF01458 Uncharacterized protein family (UPF0051) LIL_10643 PF00355 Rieske [2Fe-2S] domain LIL_10644 PF00266 Aminotransferase class-V LIL_10645 PF01592 NifU-like N terminal domain LIL_10646 PF01883 Iron-sulfur cluster assembly protein LIL_10651 PF12792 CSS motif domain associated with EAL LIL_10651 PF00563 EAL domain LIL_10657 PF01207 Dihydrouridine synthase (Dus) LIL_10659 PF01266 FAD dependent oxidoreductase LIL_10659 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LIL_10662 PF13649 Methyltransferase domain LIL_10666 PF03372 Endonuclease/Exonuclease/phosphatase family LIL_10667 PF07690 Major Facilitator Superfamily LIL_10668 PF01872 RibD C-terminal domain LIL_10677 PF04471 Restriction endonuclease LIL_10677 PF14338 Mrr N-terminal domain LIL_10679 PF13276 HTH-like domain LIL_10679 PF00665 Integrase core domain LIL_10679 PF13333 Integrase core domain LIL_10682 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIL_10682 PF00005 ABC transporter LIL_10686 PF00005 ABC transporter LIL_10689 PF00072 Response regulator receiver domain LIL_10689 PF00486 Transcriptional regulatory protein, C terminal LIL_10690 PF01259 SAICAR synthetase LIL_10691 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase LIL_10694 PF00034 Cytochrome c LIL_10694 PF03150 Di-haem cytochrome c peroxidase LIL_10697 PF00672 HAMP domain LIL_10697 PF16591 Helical bimodular sensor domain LIL_10697 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_10701 PF01895 PhoU domain LIL_10725 PF07660 Secretin and TonB N terminus short domain LIL_10725 PF07715 TonB-dependent Receptor Plug Domain LIL_10725 PF00593 TonB dependent receptor LIL_10726 PF02868 Thermolysin metallopeptidase, alpha-helical domain LIL_10726 PF01447 Thermolysin metallopeptidase, catalytic domain LIL_10726 PF03413 Peptidase propeptide and YPEB domain LIL_10726 PF07504 Fungalysin/Thermolysin Propeptide Motif LIL_10729 PF00583 Acetyltransferase (GNAT) family LIL_10729 PF00795 Carbon-nitrogen hydrolase LIL_10730 PF02913 FAD linked oxidases, C-terminal domain LIL_10730 PF01565 FAD binding domain LIL_10731 PF02503 Polyphosphate kinase middle domain LIL_10731 PF13089 Polyphosphate kinase N-terminal domain LIL_10731 PF13090 Polyphosphate kinase C-terminal domain 2 LIL_10731 PF17941 Polyphosphate kinase C-terminal domain 1 LIL_10739 PF01520 N-acetylmuramoyl-L-alanine amidase LIL_10740 PF00270 DEAD/DEAH box helicase LIL_10740 PF00271 Helicase conserved C-terminal domain LIL_10740 PF12300 ATP-dependent RNA helicase RhlB LIL_10742 PF01042 Endoribonuclease L-PSP LIL_10746 PF00883 Cytosol aminopeptidase family, catalytic domain LIL_10747 PF00578 AhpC/TSA family LIL_10752 PF06574 FAD synthetase LIL_10752 PF01687 Riboflavin kinase LIL_10757 PF07196 Flagellin hook IN motif LIL_10757 PF07195 Flagellar hook-associated protein 2 C-terminus LIL_10757 PF02465 Flagellar hook-associated protein 2 N-terminus LIL_10758 PF00230 Major intrinsic protein LIL_10760 PF01551 Peptidase family M23 LIL_10765 PF00467 KOW motif LIL_10765 PF02357 Transcription termination factor nusG LIL_10766 PF00298 Ribosomal protein L11, RNA binding domain LIL_10766 PF03946 Ribosomal protein L11, N-terminal domain LIL_10767 PF00687 Ribosomal protein L1p/L10e family LIL_10768 PF00466 Ribosomal protein L10 LIL_10769 PF16320 Ribosomal protein L7/L12 dimerisation domain LIL_10769 PF00542 Ribosomal protein L7/L12 C-terminal domain LIL_10770 PF04563 RNA polymerase beta subunit LIL_10770 PF04561 RNA polymerase Rpb2, domain 2 LIL_10770 PF04565 RNA polymerase Rpb2, domain 3 LIL_10770 PF04560 RNA polymerase Rpb2, domain 7 LIL_10770 PF00562 RNA polymerase Rpb2, domain 6 LIL_10770 PF10385 RNA polymerase beta subunit external 1 domain LIL_10771 PF04997 RNA polymerase Rpb1, domain 1 LIL_10771 PF05000 RNA polymerase Rpb1, domain 4 LIL_10771 PF04998 RNA polymerase Rpb1, domain 5 LIL_10771 PF04983 RNA polymerase Rpb1, domain 3 LIL_10771 PF00623 RNA polymerase Rpb1, domain 2 LIL_10772 PF00164 Ribosomal protein S12/S23 LIL_10773 PF00177 Ribosomal protein S7p/S5e LIL_10777 PF00586 AIR synthase related protein, N-terminal domain LIL_10777 PF02769 AIR synthase related protein, C-terminal domain LIL_10779 PF00572 Ribosomal protein L13 LIL_10780 PF00380 Ribosomal protein S9/S16 LIL_10781 PF02272 DHHA1 domain LIL_10781 PF01411 tRNA synthetases class II (A) LIL_10781 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LIL_10782 PF04461 Protein of unknown function (DUF520) LIL_10786 PF05193 Peptidase M16 inactive domain LIL_10786 PF00675 Insulinase (Peptidase family M16) LIL_10787 PF05193 Peptidase M16 inactive domain LIL_10804 PF01272 Transcription elongation factor, GreA/GreB, C-term LIL_10804 PF03449 Transcription elongation factor, N-terminal LIL_10810 PF01757 Acyltransferase family LIL_10811 PF10282 Lactonase, 7-bladed beta-propeller LIL_10817 PF00378 Enoyl-CoA hydratase/isomerase LIL_10818 PF02110 Hydroxyethylthiazole kinase family LIL_10824 PF00378 Enoyl-CoA hydratase/isomerase LIL_10825 PF02110 Hydroxyethylthiazole kinase family LIL_10831 PF00378 Enoyl-CoA hydratase/isomerase LIL_10832 PF02110 Hydroxyethylthiazole kinase family LIL_10838 PF00378 Enoyl-CoA hydratase/isomerase LIL_10839 PF02110 Hydroxyethylthiazole kinase family LIL_10845 PF00378 Enoyl-CoA hydratase/isomerase LIL_10846 PF02110 Hydroxyethylthiazole kinase family LIL_10852 PF00378 Enoyl-CoA hydratase/isomerase LIL_10853 PF02110 Hydroxyethylthiazole kinase family LIL_10859 PF00378 Enoyl-CoA hydratase/isomerase LIL_10860 PF02110 Hydroxyethylthiazole kinase family LIL_10866 PF00378 Enoyl-CoA hydratase/isomerase LIL_10867 PF02110 Hydroxyethylthiazole kinase family LIL_10873 PF00378 Enoyl-CoA hydratase/isomerase LIL_10874 PF02110 Hydroxyethylthiazole kinase family LIL_10880 PF08448 PAS fold LIL_10880 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB LIL_10880 PF00512 His Kinase A (phospho-acceptor) domain LIL_10880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10880 PF00672 HAMP domain LIL_10881 PF02798 Glutathione S-transferase, N-terminal domain LIL_10881 PF00043 Glutathione S-transferase, C-terminal domain LIL_10883 PF00107 Zinc-binding dehydrogenase LIL_10883 PF08240 Alcohol dehydrogenase GroES-like domain LIL_10888 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LIL_10888 PF01578 Cytochrome C assembly protein LIL_10889 PF03100 CcmE LIL_10921 PF08338 Domain of unknown function (DUF1731) LIL_10921 PF01370 NAD dependent epimerase/dehydratase family LIL_10925 PF00953 Glycosyl transferase family 4 LIL_10926 PF00701 Dihydrodipicolinate synthetase family LIL_10927 PF05173 Dihydrodipicolinate reductase, C-terminus LIL_10927 PF01113 Dihydrodipicolinate reductase, N-terminus LIL_10928 PF02457 DisA bacterial checkpoint controller nucleotide-binding LIL_10928 PF10372 Bacterial membrane-spanning protein N-terminus LIL_10930 PF01648 4'-phosphopantetheinyl transferase superfamily LIL_10934 PF00318 Ribosomal protein S2 LIL_10935 PF00889 Elongation factor TS LIL_10936 PF00696 Amino acid kinase family LIL_10937 PF01765 Ribosome recycling factor LIL_10938 PF01255 Putative undecaprenyl diphosphate synthase LIL_10940 PF13288 DXP reductoisomerase C-terminal domain LIL_10940 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LIL_10940 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LIL_10941 PF02163 Peptidase family M50 LIL_10941 PF17820 PDZ domain LIL_10941 PF02163 Peptidase family M50 LIL_10941 PF17820 PDZ domain LIL_10942 PF03129 Anticodon binding domain LIL_10942 PF04073 Aminoacyl-tRNA editing domain LIL_10942 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIL_10943 PF00291 Pyridoxal-phosphate dependent enzyme LIL_10944 PF00290 Tryptophan synthase alpha chain LIL_10946 PF00072 Response regulator receiver domain LIL_10946 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_10947 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LIL_10947 PF02779 Transketolase, pyrimidine binding domain LIL_10947 PF02780 Transketolase, C-terminal domain LIL_10959 PF01568 Molydopterin dinucleotide binding domain LIL_10959 PF00384 Molybdopterin oxidoreductase LIL_10966 PF00593 TonB dependent receptor LIL_10966 PF07715 TonB-dependent Receptor Plug Domain LIL_10968 PF00255 Glutathione peroxidase LIL_10970 PF00912 Transglycosylase LIL_10970 PF00905 Penicillin binding protein transpeptidase domain LIL_10975 PF01592 NifU-like N terminal domain LIL_10976 PF01197 Ribosomal protein L31 LIL_10977 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIL_10977 PF07498 Rho termination factor, N-terminal domain LIL_10977 PF07497 Rho termination factor, RNA-binding domain LIL_10982 PF03372 Endonuclease/Exonuclease/phosphatase family LIL_10983 PF03372 Endonuclease/Exonuclease/phosphatase family LIL_10986 PF00378 Enoyl-CoA hydratase/isomerase LIL_10988 PF12282 Signal transduction histidine kinase LIL_10988 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10988 PF07568 Histidine kinase LIL_10991 PF01551 Peptidase family M23 LIL_10993 PF17092 Penicillin-binding protein OB-like domain LIL_10993 PF00912 Transglycosylase LIL_10993 PF00905 Penicillin binding protein transpeptidase domain LIL_10995 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LIL_10995 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LIL_10996 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LIL_11016 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_11023 PF01433 Peptidase family M1 domain LIL_11023 PF11838 ERAP1-like C-terminal domain LIL_11025 PF00293 NUDIX domain LIL_11026 PF00580 UvrD/REP helicase N-terminal domain LIL_11026 PF13361 UvrD-like helicase C-terminal domain LIL_11031 PF01022 Bacterial regulatory protein, arsR family LIL_11035 PF01636 Phosphotransferase enzyme family LIL_11036 PF02684 Lipid-A-disaccharide synthetase LIL_11041 PF02629 CoA binding domain LIL_11041 PF00549 CoA-ligase LIL_11042 PF08442 ATP-grasp domain LIL_11042 PF00549 CoA-ligase LIL_11044 PF01556 DnaJ C terminal domain LIL_11044 PF00226 DnaJ domain LIL_11044 PF00684 DnaJ central domain LIL_11045 PF00919 Uncharacterized protein family UPF0004 LIL_11045 PF01938 TRAM domain LIL_11045 PF04055 Radical SAM superfamily LIL_11048 PF00709 Adenylosuccinate synthetase LIL_11049 PF13393 Histidyl-tRNA synthetase LIL_11050 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LIL_11050 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LIL_11051 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LIL_11051 PF00355 Rieske [2Fe-2S] domain LIL_11053 PF00692 dUTPase LIL_11057 PF00795 Carbon-nitrogen hydrolase LIL_11058 PF00795 Carbon-nitrogen hydrolase LIL_11060 PF11890 Domain of unknown function (DUF3410) LIL_11060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIL_11060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIL_11071 PF13276 HTH-like domain LIL_11071 PF00665 Integrase core domain LIL_11071 PF13333 Integrase core domain LIL_11074 PF00919 Uncharacterized protein family UPF0004 LIL_11074 PF18693 TRAM domain LIL_11074 PF04055 Radical SAM superfamily LIL_11075 PF01066 CDP-alcohol phosphatidyltransferase LIL_11076 PF00591 Glycosyl transferase family, a/b domain LIL_11076 PF02885 Glycosyl transferase family, helical bundle domain LIL_11077 PF02699 Preprotein translocase subunit LIL_11079 PF02355 Protein export membrane protein LIL_11080 PF02355 Protein export membrane protein LIL_11080 PF07549 SecD/SecF GG Motif LIL_11081 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LIL_11081 PF01872 RibD C-terminal domain LIL_11082 PF00677 Lumazine binding domain LIL_11083 PF00925 GTP cyclohydrolase II LIL_11083 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LIL_11090 PF00528 Binding-protein-dependent transport system inner membrane component LIL_11091 PF00528 Binding-protein-dependent transport system inner membrane component LIL_11092 PF12857 TOBE-like domain LIL_11092 PF00005 ABC transporter LIL_11092 PF17850 CysA C-terminal regulatory domain LIL_11097 PF00069 Protein kinase domain LIL_11097 PF03793 PASTA domain LIL_11098 PF01243 Pyridoxamine 5'-phosphate oxidase LIL_11098 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LIL_11104 PF13193 AMP-binding enzyme C-terminal domain LIL_11104 PF00501 AMP-binding enzyme LIL_11105 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIL_11105 PF01464 Transglycosylase SLT domain LIL_11106 PF01119 DNA mismatch repair protein, C-terminal domain LIL_11106 PF08676 MutL C terminal dimerisation domain LIL_11110 PF00004 ATPase family associated with various cellular activities (AAA) LIL_11110 PF16193 AAA C-terminal domain LIL_11110 PF12002 MgsA AAA+ ATPase C terminal LIL_11112 PF00155 Aminotransferase class I and II LIL_11115 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_11116 PF00563 EAL domain LIL_11116 PF00990 Diguanylate cyclase, GGDEF domain LIL_11116 PF08447 PAS fold LIL_11116 PF08448 PAS fold LIL_11119 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LIL_11121 PF00672 HAMP domain LIL_11121 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_11126 PF00378 Enoyl-CoA hydratase/isomerase LIL_11129 PF03062 MBOAT, membrane-bound O-acyltransferase family LIL_11131 PF08281 Sigma-70, region 4 LIL_11131 PF04542 Sigma-70 region 2 LIL_11135 PF03741 Integral membrane protein TerC family LIL_11137 PF00582 Universal stress protein family LIL_11139 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_11139 PF00672 HAMP domain LIL_11139 PF02743 Cache domain LIL_11145 PF00912 Transglycosylase LIL_11145 PF00905 Penicillin binding protein transpeptidase domain LIL_11145 PF17092 Penicillin-binding protein OB-like domain LIL_11146 PF00364 Biotin-requiring enzyme LIL_11146 PF02817 e3 binding domain LIL_11146 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LIL_11147 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIL_11147 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIL_11148 PF00676 Dehydrogenase E1 component LIL_11148 PF16078 2-oxoglutarate dehydrogenase N-terminus LIL_11148 PF02779 Transketolase, pyrimidine binding domain LIL_11148 PF16870 2-oxoglutarate dehydrogenase C-terminal LIL_11154 PF00183 Hsp90 protein LIL_11158 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LIL_11158 PF00117 Glutamine amidotransferase class-I LIL_11159 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIL_11159 PF03129 Anticodon binding domain LIL_11159 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LIL_11161 PF05198 Translation initiation factor IF-3, N-terminal domain LIL_11161 PF00707 Translation initiation factor IF-3, C-terminal domain LIL_11162 PF01632 Ribosomal protein L35 LIL_11163 PF00453 Ribosomal protein L20 LIL_11165 PF05164 Cell division protein ZapA LIL_11166 PF01812 5-formyltetrahydrofolate cyclo-ligase family LIL_11167 PF01584 CheW-like domain LIL_11168 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11168 PF01627 Hpt domain LIL_11168 PF02895 Signal transducing histidine kinase, homodimeric domain LIL_11168 PF01584 CheW-like domain LIL_11168 PF07194 P2 response regulator binding domain LIL_11169 PF00072 Response regulator receiver domain LIL_11169 PF01339 CheB methylesterase LIL_11170 PF00072 Response regulator receiver domain LIL_11171 PF02616 Segregation and condensation protein ScpA LIL_11172 PF04079 Segregation and condensation complex subunit ScpB LIL_11173 PF01842 ACT domain LIL_11173 PF01817 Chorismate mutase type II LIL_11173 PF00800 Prephenate dehydratase LIL_11174 PF01842 ACT domain LIL_11174 PF02153 Prephenate dehydrogenase LIL_11175 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LIL_11176 PF02224 Cytidylate kinase LIL_11177 PF00575 S1 RNA binding domain LIL_11179 PF01634 ATP phosphoribosyltransferase LIL_11180 PF01783 Ribosomal L32p protein family LIL_11181 PF02504 Fatty acid synthesis protein LIL_11191 PF00884 Sulfatase LIL_11195 PF12704 MacB-like periplasmic core domain LIL_11195 PF00005 ABC transporter LIL_11195 PF02687 FtsX-like permease family LIL_11196 PF00005 ABC transporter LIL_11201 PF00155 Aminotransferase class I and II LIL_11202 PF08406 CbbQ/NirQ/NorQ C-terminal LIL_11202 PF07728 AAA domain (dynein-related subfamily) LIL_11205 PF01668 SmpB protein LIL_11206 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LIL_11206 PF01926 50S ribosome-binding GTPase LIL_11207 PF02660 Glycerol-3-phosphate acyltransferase LIL_11211 PF02463 RecF/RecN/SMC N terminal domain LIL_11211 PF06470 SMC proteins Flexible Hinge Domain LIL_11215 PF00120 Glutamine synthetase, catalytic domain LIL_11215 PF03951 Glutamine synthetase, beta-Grasp domain LIL_11220 PF02769 AIR synthase related protein, C-terminal domain LIL_11220 PF00586 AIR synthase related protein, N-terminal domain LIL_11220 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LIL_11222 PF08264 Anticodon-binding domain of tRNA LIL_11222 PF00133 tRNA synthetases class I (I, L, M and V) LIL_11230 PF01425 Amidase LIL_11231 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LIL_11231 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LIL_11232 PF03109 ABC1 family LIL_11233 PF01252 Signal peptidase (SPase) II LIL_11235 PF01594 AI-2E family transporter LIL_11236 PF00892 EamA-like transporter family LIL_11237 PF01758 Sodium Bile acid symporter family LIL_11241 PF00072 Response regulator receiver domain LIL_11242 PF00512 His Kinase A (phospho-acceptor) domain LIL_11242 PF08446 PAS fold LIL_11242 PF00360 Phytochrome region LIL_11242 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11242 PF01590 GAF domain LIL_11245 PF09587 Bacterial capsule synthesis protein PGA_cap LIL_11248 PF00593 TonB dependent receptor LIL_11248 PF07715 TonB-dependent Receptor Plug Domain LIL_11256 PF03062 MBOAT, membrane-bound O-acyltransferase family LIL_11261 PF07690 Major Facilitator Superfamily LIL_11262 PF05726 Pirin C-terminal cupin domain LIL_11262 PF02678 Pirin LIL_11266 PF01757 Acyltransferase family LIL_11267 PF01965 DJ-1/PfpI family LIL_11267 PF12833 Helix-turn-helix domain LIL_11271 PF03129 Anticodon binding domain LIL_11271 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIL_11275 PF00294 pfkB family carbohydrate kinase LIL_11279 PF03176 MMPL family LIL_11285 PF04116 Fatty acid hydroxylase superfamily LIL_11286 PF00464 Serine hydroxymethyltransferase LIL_11287 PF03099 Biotin/lipoate A/B protein ligase family LIL_11292 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_11295 PF00069 Protein kinase domain LIL_11295 PF03793 PASTA domain LIL_11296 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LIL_11296 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LIL_11297 PF01144 Coenzyme A transferase LIL_11302 PF02801 Beta-ketoacyl synthase, C-terminal domain LIL_11302 PF00109 Beta-ketoacyl synthase, N-terminal domain LIL_11306 PF01230 HIT domain LIL_11307 PF00480 ROK family LIL_11308 PF02687 FtsX-like permease family LIL_11308 PF12704 MacB-like periplasmic core domain LIL_11308 PF00005 ABC transporter LIL_11314 PF03963 Flagellar hook capping protein - N-terminal region LIL_11315 PF00460 Flagella basal body rod protein LIL_11315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIL_11315 PF07559 Flagellar basal body protein FlaE LIL_11320 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LIL_11320 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LIL_11323 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_11323 PF00672 HAMP domain LIL_11324 PF05598 Transposase domain (DUF772) LIL_11325 PF01734 Patatin-like phospholipase LIL_11325 PF00027 Cyclic nucleotide-binding domain LIL_11326 PF00512 His Kinase A (phospho-acceptor) domain LIL_11326 PF00360 Phytochrome region LIL_11326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11326 PF01590 GAF domain LIL_11326 PF08446 PAS fold LIL_11327 PF00072 Response regulator receiver domain LIL_11328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11328 PF00072 Response regulator receiver domain LIL_11328 PF13426 PAS domain LIL_11329 PF00990 Diguanylate cyclase, GGDEF domain LIL_11329 PF00563 EAL domain LIL_11329 PF03707 Bacterial signalling protein N terminal repeat LIL_11342 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_11342 PF00672 HAMP domain LIL_11342 PF12729 Four helix bundle sensory module for signal transduction LIL_11345 PF10417 C-terminal domain of 1-Cys peroxiredoxin LIL_11345 PF00578 AhpC/TSA family LIL_11346 PF01458 Uncharacterized protein family (UPF0051) LIL_11348 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11348 PF00512 His Kinase A (phospho-acceptor) domain LIL_11348 PF08448 PAS fold LIL_11348 PF13188 PAS domain LIL_11348 PF00072 Response regulator receiver domain LIL_11356 PF01544 CorA-like Mg2+ transporter protein LIL_11359 PF00440 Bacterial regulatory proteins, tetR family LIL_11359 PF16295 Tetracyclin repressor-like, C-terminal domain LIL_11361 PF10502 Signal peptidase, peptidase S26 LIL_11365 PF00119 ATP synthase A chain LIL_11366 PF00137 ATP synthase subunit C LIL_11367 PF00430 ATP synthase B/B' CF(0) LIL_11368 PF00213 ATP synthase delta (OSCP) subunit LIL_11369 PF02874 ATP synthase alpha/beta family, beta-barrel domain LIL_11369 PF00306 ATP synthase alpha/beta chain, C terminal domain LIL_11369 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIL_11370 PF00231 ATP synthase LIL_11371 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIL_11371 PF02874 ATP synthase alpha/beta family, beta-barrel domain LIL_11372 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LIL_11376 PF03062 MBOAT, membrane-bound O-acyltransferase family LIL_11383 PF02541 Ppx/GppA phosphatase family LIL_11387 PF00905 Penicillin binding protein transpeptidase domain LIL_11387 PF03717 Penicillin-binding Protein dimerisation domain LIL_11388 PF01098 Cell cycle protein LIL_11397 PF01416 tRNA pseudouridine synthase LIL_11398 PF09986 Uncharacterized protein conserved in bacteria (DUF2225) LIL_11401 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIL_11401 PF00289 Biotin carboxylase, N-terminal domain LIL_11401 PF02785 Biotin carboxylase C-terminal domain LIL_11402 PF00364 Biotin-requiring enzyme LIL_11403 PF03144 Elongation factor Tu domain 2 LIL_11403 PF16658 Class II release factor RF3, C-terminal domain LIL_11403 PF00009 Elongation factor Tu GTP binding domain LIL_11406 PF02082 Transcriptional regulator LIL_11408 PF03060 Nitronate monooxygenase LIL_11415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11415 PF12282 Signal transduction histidine kinase LIL_11415 PF07568 Histidine kinase LIL_11416 PF12282 Signal transduction histidine kinase LIL_11416 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11416 PF07568 Histidine kinase LIL_11418 PF05598 Transposase domain (DUF772) LIL_11419 PF13183 4Fe-4S dicluster domain LIL_11419 PF02754 Cysteine-rich domain LIL_11422 PF04055 Radical SAM superfamily LIL_11424 PF03707 Bacterial signalling protein N terminal repeat LIL_11424 PF00990 Diguanylate cyclase, GGDEF domain LIL_11424 PF00563 EAL domain LIL_11427 PF04055 Radical SAM superfamily LIL_11427 PF12544 Lysine-2,3-aminomutase LIL_11428 PF01820 D-ala D-ala ligase N-terminus LIL_11428 PF07478 D-ala D-ala ligase C-terminus LIL_11432 PF00696 Amino acid kinase family LIL_11432 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase LIL_11433 PF01170 Putative RNA methylase family UPF0020 LIL_11433 PF10672 S-adenosylmethionine-dependent methyltransferase LIL_11433 PF02926 THUMP domain LIL_11434 PF00210 Ferritin-like domain LIL_11435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LIL_11435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LIL_11436 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LIL_11437 PF00557 Metallopeptidase family M24 LIL_11437 PF05195 Aminopeptidase P, N-terminal domain LIL_11443 PF01546 Peptidase family M20/M25/M40 LIL_11443 PF07687 Peptidase dimerisation domain LIL_11449 PF17827 PrmC N-terminal domain LIL_11451 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIL_11451 PF00460 Flagella basal body rod protein LIL_11453 PF02107 Flagellar L-ring protein LIL_11454 PF02119 Flagellar P-ring protein LIL_11456 PF03631 Virulence factor BrkB LIL_11461 PF00118 TCP-1/cpn60 chaperonin family LIL_11462 PF00166 Chaperonin 10 Kd subunit LIL_11468 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_11470 PF07715 TonB-dependent Receptor Plug Domain LIL_11470 PF00593 TonB dependent receptor LIL_11472 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_11472 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_11472 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_11475 PF02773 S-adenosylmethionine synthetase, C-terminal domain LIL_11475 PF00438 S-adenosylmethionine synthetase, N-terminal domain LIL_11475 PF02772 S-adenosylmethionine synthetase, central domain LIL_11476 PF02779 Transketolase, pyrimidine binding domain LIL_11476 PF02780 Transketolase, C-terminal domain LIL_11478 PF08240 Alcohol dehydrogenase GroES-like domain LIL_11478 PF00107 Zinc-binding dehydrogenase LIL_11480 PF01575 MaoC like domain LIL_11482 PF01432 Peptidase family M3 LIL_11484 PF13417 Glutathione S-transferase, N-terminal domain LIL_11484 PF14497 Glutathione S-transferase, C-terminal domain LIL_11485 PF00106 short chain dehydrogenase LIL_11486 PF04116 Fatty acid hydroxylase superfamily LIL_11488 PF02666 Phosphatidylserine decarboxylase LIL_11490 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LIL_11490 PF04509 CheC-like family LIL_11492 PF00813 FliP family LIL_11493 PF01313 Bacterial export proteins, family 3 LIL_11494 PF01311 Bacterial export proteins, family 1 LIL_11495 PF01312 FlhB HrpN YscU SpaS Family LIL_11496 PF00771 FHIPEP family LIL_11497 PF00448 SRP54-type protein, GTPase domain LIL_11498 PF10609 NUBPL iron-transfer P-loop NTPase LIL_11500 PF04542 Sigma-70 region 2 LIL_11500 PF04539 Sigma-70 region 3 LIL_11500 PF04545 Sigma-70, region 4 LIL_11504 PF04025 Domain of unknown function (DUF370) LIL_11505 PF00625 Guanylate kinase LIL_11511 PF02874 ATP synthase alpha/beta family, beta-barrel domain LIL_11511 PF18269 T3SS EscN ATPase C-terminal domain LIL_11511 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIL_11512 PF08345 Flagellar M-ring protein C-terminal LIL_11512 PF01514 Secretory protein of YscJ/FliF family LIL_11514 PF02108 Flagellar assembly protein FliH LIL_11520 PF03102 NeuB family LIL_11520 PF08666 SAF domain LIL_11522 PF07664 Ferrous iron transport protein B C terminus LIL_11522 PF02421 Ferrous iron transport protein B LIL_11522 PF07670 Nucleoside recognition LIL_11524 PF03109 ABC1 family LIL_11527 PF17200 Single Cache domain 2 LIL_11527 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_11527 PF00672 HAMP domain LIL_11529 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LIL_11529 PF00205 Thiamine pyrophosphate enzyme, central domain LIL_11529 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIL_11530 PF10369 Small subunit of acetolactate synthase LIL_11534 PF04055 Radical SAM superfamily LIL_11535 PF00933 Glycosyl hydrolase family 3 N terminal domain LIL_11535 PF01915 Glycosyl hydrolase family 3 C-terminal domain LIL_11536 PF13472 GDSL-like Lipase/Acylhydrolase family LIL_11537 PF05697 Bacterial trigger factor protein (TF) LIL_11537 PF05698 Bacterial trigger factor protein (TF) C-terminus LIL_11537 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIL_11538 PF00574 Clp protease LIL_11539 PF07724 AAA domain (Cdc48 subfamily) LIL_11539 PF06689 ClpX C4-type zinc finger LIL_11539 PF10431 C-terminal, D2-small domain, of ClpB protein LIL_11544 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LIL_11545 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIL_11546 PF08448 PAS fold LIL_11546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11546 PF13188 PAS domain LIL_11546 PF00512 His Kinase A (phospho-acceptor) domain LIL_11546 PF00072 Response regulator receiver domain LIL_11548 PF08245 Mur ligase middle domain LIL_11549 PF14102 Capsule biosynthesis CapC LIL_11553 PF00672 HAMP domain LIL_11553 PF00512 His Kinase A (phospho-acceptor) domain LIL_11553 PF00072 Response regulator receiver domain LIL_11553 PF01627 Hpt domain LIL_11553 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11553 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LIL_11554 PF12282 Signal transduction histidine kinase LIL_11554 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11554 PF07568 Histidine kinase LIL_11555 PF12848 ABC transporter LIL_11555 PF16326 ABC transporter C-terminal domain LIL_11555 PF00005 ABC transporter LIL_11558 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_11559 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LIL_11560 PF08446 PAS fold LIL_11560 PF00360 Phytochrome region LIL_11560 PF01590 GAF domain LIL_11560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11561 PF00072 Response regulator receiver domain LIL_11565 PF01590 GAF domain LIL_11565 PF00360 Phytochrome region LIL_11565 PF00563 EAL domain LIL_11565 PF00990 Diguanylate cyclase, GGDEF domain LIL_11566 PF05161 MOFRL family LIL_11566 PF13660 Domain of unknown function (DUF4147) LIL_11569 PF13333 Integrase core domain LIL_11569 PF13276 HTH-like domain LIL_11569 PF00665 Integrase core domain LIL_11575 PF03372 Endonuclease/Exonuclease/phosphatase family LIL_11576 PF00815 Histidinol dehydrogenase LIL_11577 PF02569 Pantoate-beta-alanine ligase LIL_11578 PF17757 UvrB interaction domain LIL_11578 PF00271 Helicase conserved C-terminal domain LIL_11578 PF00270 DEAD/DEAH box helicase LIL_11578 PF02559 CarD-like/TRCF domain LIL_11578 PF03461 TRCF domain LIL_11580 PF02673 Bacitracin resistance protein BacA LIL_11582 PF02397 Bacterial sugar transferase LIL_11583 PF02686 Glu-tRNAGln amidotransferase C subunit LIL_11584 PF01425 Amidase LIL_11585 PF00977 Histidine biosynthesis protein LIL_11595 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIL_11597 PF03062 MBOAT, membrane-bound O-acyltransferase family LIL_11601 PF00589 Phage integrase family LIL_11601 PF02899 Phage integrase, N-terminal SAM-like domain LIL_11604 PF04993 TfoX N-terminal domain LIL_11617 PF00005 ABC transporter LIL_11619 PF13649 Methyltransferase domain LIL_11622 PF00557 Metallopeptidase family M24 LIL_11625 PF08331 Domain of unknown function (DUF1730) LIL_11631 PF00873 AcrB/AcrD/AcrF family LIL_11632 PF01327 Polypeptide deformylase LIL_11635 PF07228 Stage II sporulation protein E (SpoIIE) LIL_11635 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain LIL_11636 PF01740 STAS domain LIL_11637 PF01039 Carboxyl transferase domain LIL_11638 PF00289 Biotin carboxylase, N-terminal domain LIL_11638 PF02785 Biotin carboxylase C-terminal domain LIL_11638 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIL_11641 PF01339 CheB methylesterase LIL_11641 PF00072 Response regulator receiver domain LIL_11642 PF03975 CheD chemotactic sensory transduction LIL_11643 PF01584 CheW-like domain LIL_11644 PF17202 Single cache domain 3 LIL_11644 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_11644 PF00672 HAMP domain LIL_11645 PF07194 P2 response regulator binding domain LIL_11645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11645 PF02895 Signal transducing histidine kinase, homodimeric domain LIL_11645 PF01584 CheW-like domain LIL_11645 PF01627 Hpt domain LIL_11647 PF00486 Transcriptional regulatory protein, C terminal LIL_11647 PF00072 Response regulator receiver domain LIL_11648 PF00072 Response regulator receiver domain LIL_11649 PF00989 PAS fold LIL_11649 PF00512 His Kinase A (phospho-acceptor) domain LIL_11649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11650 PF02401 LytB protein LIL_11652 PF00700 Bacterial flagellin C-terminal helical region LIL_11652 PF00669 Bacterial flagellin N-terminal helical region LIL_11653 PF00669 Bacterial flagellin N-terminal helical region LIL_11653 PF00700 Bacterial flagellin C-terminal helical region LIL_11654 PF01923 Cobalamin adenosyltransferase LIL_11655 PF00854 POT family LIL_11656 PF00877 NlpC/P60 family LIL_11658 PF00294 pfkB family carbohydrate kinase LIL_11658 PF01467 Cytidylyltransferase-like LIL_11659 PF01467 Cytidylyltransferase-like LIL_11659 PF00294 pfkB family carbohydrate kinase LIL_11660 PF00117 Glutamine amidotransferase class-I LIL_11660 PF06418 CTP synthase N-terminus LIL_11661 PF00793 DAHP synthetase I family LIL_11664 PF00005 ABC transporter LIL_11665 PF00309 Sigma-54 factor, Activator interacting domain (AID) LIL_11665 PF04552 Sigma-54, DNA binding domain LIL_11665 PF04963 Sigma-54 factor, core binding domain LIL_11666 PF07475 HPr Serine kinase C-terminal domain LIL_11666 PF02603 HPr Serine kinase N terminus LIL_11667 PF00381 PTS HPr component phosphorylation site LIL_11668 PF00989 PAS fold LIL_11668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11668 PF00672 HAMP domain LIL_11668 PF00512 His Kinase A (phospho-acceptor) domain LIL_11669 PF02954 Bacterial regulatory protein, Fis family LIL_11669 PF00158 Sigma-54 interaction domain LIL_11669 PF00072 Response regulator receiver domain LIL_11671 PF00270 DEAD/DEAH box helicase LIL_11671 PF18074 Primosomal protein N C-terminal domain LIL_11671 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LIL_11671 PF00271 Helicase conserved C-terminal domain LIL_11671 PF17764 3′ DNA-binding domain (3′BD) LIL_11672 PF02911 Formyl transferase, C-terminal domain LIL_11672 PF00551 Formyl transferase LIL_11673 PF00069 Protein kinase domain LIL_11673 PF03793 PASTA domain LIL_11674 PF00834 Ribulose-phosphate 3 epimerase family LIL_11675 PF00886 Ribosomal protein S16 LIL_11677 PF01782 RimM N-terminal domain LIL_11677 PF05239 PRC-barrel domain LIL_11678 PF01746 tRNA (Guanine-1)-methyltransferase LIL_11679 PF01245 Ribosomal protein L19 LIL_11680 PF01351 Ribonuclease HII LIL_11683 PF00072 Response regulator receiver domain LIL_11684 PF02021 Uncharacterised protein family UPF0102 LIL_11686 PF13335 Magnesium chelatase, subunit ChlI C-terminal LIL_11686 PF01078 Magnesium chelatase, subunit ChlI LIL_11688 PF01551 Peptidase family M23 LIL_11688 PF08525 Opacity-associated protein A N-terminal motif LIL_11688 PF01476 LysM domain LIL_11690 PF03958 Bacterial type II/III secretion system short domain LIL_11690 PF00263 Bacterial type II and III secretion system protein LIL_11691 PF00437 Type II/IV secretion system protein LIL_11692 PF00482 Type II secretion system (T2SS), protein F LIL_11693 PF08334 Type II secretion system (T2SS), protein G LIL_11693 PF07963 Prokaryotic N-terminal methylation motif LIL_11704 PF00440 Bacterial regulatory proteins, tetR family LIL_11705 PF01361 Tautomerase enzyme LIL_11706 PF00107 Zinc-binding dehydrogenase LIL_11706 PF08240 Alcohol dehydrogenase GroES-like domain LIL_11707 PF08471 Class II vitamin B12-dependent ribonucleotide reductase LIL_11707 PF02867 Ribonucleotide reductase, barrel domain LIL_11709 PF02609 Exonuclease VII small subunit LIL_11710 PF13742 OB-fold nucleic acid binding domain LIL_11710 PF02601 Exonuclease VII, large subunit LIL_11715 PF00488 MutS domain V LIL_11715 PF01713 Smr domain LIL_11716 PF00682 HMGL-like LIL_11716 PF08502 LeuA allosteric (dimerisation) domain LIL_11717 PF01195 Peptidyl-tRNA hydrolase LIL_11718 PF02899 Phage integrase, N-terminal SAM-like domain LIL_11718 PF00589 Phage integrase family LIL_11719 PF00227 Proteasome subunit LIL_11720 PF07724 AAA domain (Cdc48 subfamily) LIL_11720 PF07728 AAA domain (dynein-related subfamily) LIL_11720 PF10431 C-terminal, D2-small domain, of ClpB protein LIL_11726 PF01883 Iron-sulfur cluster assembly protein LIL_11726 PF10609 NUBPL iron-transfer P-loop NTPase LIL_11728 PF02441 Flavoprotein LIL_11729 PF01040 UbiA prenyltransferase family LIL_11732 PF01926 50S ribosome-binding GTPase LIL_11732 PF06071 Protein of unknown function (DUF933) LIL_11733 PF00730 HhH-GPD superfamily base excision DNA repair protein LIL_11733 PF00633 Helix-hairpin-helix motif LIL_11733 PF14815 NUDIX domain LIL_11734 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LIL_11735 PF01370 NAD dependent epimerase/dehydratase family LIL_11736 PF01022 Bacterial regulatory protein, arsR family LIL_11738 PF08668 HDOD domain LIL_11740 PF13476 AAA domain LIL_11741 PF01618 MotA/TolQ/ExbB proton channel family LIL_11742 PF02472 Biopolymer transport protein ExbD/TolR LIL_11743 PF01103 Surface antigen LIL_11743 PF07244 Surface antigen variable number repeat LIL_11744 PF00580 UvrD/REP helicase N-terminal domain LIL_11744 PF13361 UvrD-like helicase C-terminal domain LIL_11746 PF00459 Inositol monophosphatase family LIL_11749 PF00578 AhpC/TSA family LIL_11750 PF00501 AMP-binding enzyme LIL_11752 PF00391 PEP-utilising enzyme, mobile domain LIL_11752 PF02896 PEP-utilising enzyme, TIM barrel domain LIL_11752 PF05524 PEP-utilising enzyme, N-terminal LIL_11753 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LIL_11754 PF00106 short chain dehydrogenase LIL_11759 PF08713 DNA alkylation repair enzyme LIL_11762 PF07995 Glucose / Sorbosone dehydrogenase LIL_11769 PF04055 Radical SAM superfamily LIL_11770 PF01479 S4 domain LIL_11770 PF00849 RNA pseudouridylate synthase LIL_11771 PF03062 MBOAT, membrane-bound O-acyltransferase family LIL_11774 PF00923 Transaldolase/Fructose-6-phosphate aldolase LIL_11777 PF02142 MGS-like domain LIL_11777 PF01808 AICARFT/IMPCHase bienzyme LIL_11778 PF00551 Formyl transferase LIL_11779 PF02561 Flagellar protein FliS LIL_11784 PF09335 SNARE associated Golgi protein LIL_11785 PF01966 HD domain LIL_11785 PF13286 Phosphohydrolase-associated domain LIL_11788 PF00266 Aminotransferase class-V LIL_11792 PF00378 Enoyl-CoA hydratase/isomerase LIL_11792 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LIL_11792 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LIL_11793 PF12796 Ankyrin repeats (3 copies) LIL_11794 PF02913 FAD linked oxidases, C-terminal domain LIL_11794 PF01565 FAD binding domain LIL_11795 PF01266 FAD dependent oxidoreductase LIL_11795 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LIL_11796 PF00440 Bacterial regulatory proteins, tetR family LIL_11796 PF17932 Tetracyclin repressor-like, C-terminal domain LIL_11800 PF03062 MBOAT, membrane-bound O-acyltransferase family LIL_11803 PF02146 Sir2 family LIL_11808 PF00202 Aminotransferase class-III LIL_11810 PF00672 HAMP domain LIL_11810 PF02743 Cache domain LIL_11810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_11814 PF07715 TonB-dependent Receptor Plug Domain LIL_11814 PF00593 TonB dependent receptor LIL_11817 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain LIL_11817 PF01522 Polysaccharide deacetylase LIL_11818 PF00579 tRNA synthetases class I (W and Y) LIL_11819 PF01266 FAD dependent oxidoreductase LIL_11819 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LIL_11821 PF04545 Sigma-70, region 4 LIL_11821 PF04539 Sigma-70 region 3 LIL_11821 PF04542 Sigma-70 region 2 LIL_11821 PF00140 Sigma-70 factor, region 1.2 LIL_11821 PF03979 Sigma-70 factor, region 1.1 LIL_11822 PF10410 DnaB-helicase binding domain of primase LIL_11822 PF01807 CHC2 zinc finger LIL_11822 PF08275 DNA primase catalytic core, N-terminal domain LIL_11824 PF01165 Ribosomal protein S21 LIL_11828 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LIL_11830 PF00072 Response regulator receiver domain LIL_11830 PF08448 PAS fold LIL_11830 PF13188 PAS domain LIL_11830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11830 PF00512 His Kinase A (phospho-acceptor) domain LIL_11831 PF00072 Response regulator receiver domain LIL_11831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11831 PF13426 PAS domain LIL_11831 PF08448 PAS fold LIL_11831 PF00512 His Kinase A (phospho-acceptor) domain LIL_11832 PF05598 Transposase domain (DUF772) LIL_11833 PF00690 Cation transporter/ATPase, N-terminus LIL_11833 PF00689 Cation transporting ATPase, C-terminus LIL_11835 PF00571 CBS domain LIL_11835 PF03448 MgtE intracellular N domain LIL_11835 PF01769 Divalent cation transporter LIL_11836 PF00691 OmpA family LIL_11836 PF13677 Membrane MotB of proton-channel complex MotA/MotB LIL_11837 PF01545 Cation efflux family LIL_11837 PF16916 Dimerisation domain of Zinc Transporter LIL_11839 PF17760 UvrA interaction domain LIL_11839 PF17755 UvrA DNA-binding domain LIL_11840 PF01343 Peptidase family S49 LIL_11842 PF00665 Integrase core domain LIL_11842 PF13333 Integrase core domain LIL_11842 PF13276 HTH-like domain LIL_11843 PF03481 Putative GTP-binding controlling metal-binding LIL_11843 PF01300 Telomere recombination LIL_11850 PF08502 LeuA allosteric (dimerisation) domain LIL_11850 PF00682 HMGL-like LIL_11851 PF01510 N-acetylmuramoyl-L-alanine amidase LIL_11851 PF01471 Putative peptidoglycan binding domain LIL_11852 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LIL_11852 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIL_11855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIL_11856 PF00580 UvrD/REP helicase N-terminal domain LIL_11856 PF13361 UvrD-like helicase C-terminal domain LIL_11859 PF08546 Ketopantoate reductase PanE/ApbA C terminal LIL_11859 PF02558 Ketopantoate reductase PanE/ApbA LIL_11861 PF01434 Peptidase family M41 LIL_11861 PF00004 ATPase family associated with various cellular activities (AAA) LIL_11861 PF17862 AAA+ lid domain LIL_11862 PF00905 Penicillin binding protein transpeptidase domain LIL_11862 PF00912 Transglycosylase LIL_11865 PF01523 Putative modulator of DNA gyrase LIL_11869 PF00154 recA bacterial DNA recombination protein LIL_11870 PF02774 Semialdehyde dehydrogenase, dimerisation domain LIL_11870 PF01118 Semialdehyde dehydrogenase, NAD binding domain LIL_11871 PF00501 AMP-binding enzyme LIL_11873 PF00027 Cyclic nucleotide-binding domain LIL_11873 PF01734 Patatin-like phospholipase LIL_11876 PF13439 Glycosyltransferase Family 4 LIL_11876 PF00534 Glycosyl transferases group 1 LIL_11878 PF13091 PLD-like domain LIL_11881 PF08459 UvrC Helix-hairpin-helix N-terminal LIL_11881 PF02151 UvrB/uvrC motif LIL_11881 PF01541 GIY-YIG catalytic domain LIL_11882 PF03462 PCRF domain LIL_11882 PF00472 RF-1 domain LIL_11884 PF00633 Helix-hairpin-helix motif LIL_11884 PF00730 HhH-GPD superfamily base excision DNA repair protein LIL_11888 PF00155 Aminotransferase class I and II LIL_11890 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LIL_11890 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LIL_11890 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LIL_11890 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LIL_11891 PF00202 Aminotransferase class-III LIL_11892 PF00180 Isocitrate/isopropylmalate dehydrogenase LIL_11893 PF00072 Response regulator receiver domain LIL_11897 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LIL_11898 PF01624 MutS domain I LIL_11898 PF05188 MutS domain II LIL_11898 PF05192 MutS domain III LIL_11898 PF05190 MutS family domain IV LIL_11898 PF00488 MutS domain V LIL_11902 PF06968 Biotin and Thiamin Synthesis associated domain LIL_11902 PF04055 Radical SAM superfamily LIL_11903 PF00202 Aminotransferase class-III LIL_11905 PF00155 Aminotransferase class I and II LIL_11906 PF00056 lactate/malate dehydrogenase, NAD binding domain LIL_11906 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LIL_11907 PF06965 Na+/H+ antiporter 1 LIL_11907 PF13462 Thioredoxin LIL_11911 PF00288 GHMP kinases N terminal domain LIL_11911 PF08544 GHMP kinases C terminal LIL_11912 PF00474 Sodium:solute symporter family LIL_11913 PF12697 Alpha/beta hydrolase family LIL_11919 PF01343 Peptidase family S49 LIL_11920 PF03062 MBOAT, membrane-bound O-acyltransferase family LIL_11925 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LIL_11925 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LIL_11926 PF12706 Beta-lactamase superfamily domain LIL_11926 PF00753 Metallo-beta-lactamase superfamily LIL_11928 PF00753 Metallo-beta-lactamase superfamily LIL_11928 PF16123 Hydroxyacylglutathione hydrolase C-terminus LIL_11929 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIL_11929 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIL_11929 PF00403 Heavy-metal-associated domain LIL_11930 PF00005 ABC transporter LIL_11931 PF01061 ABC-2 type transporter LIL_11933 PF01722 BolA-like protein LIL_11934 PF00462 Glutaredoxin LIL_11935 PF04262 Glutamate-cysteine ligase LIL_11935 PF18419 ATP-grasp-like domain LIL_11935 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LIL_11936 PF04262 Glutamate-cysteine ligase LIL_11938 PF02861 Clp amino terminal domain, pathogenicity island component LIL_11938 PF10431 C-terminal, D2-small domain, of ClpB protein LIL_11938 PF00004 ATPase family associated with various cellular activities (AAA) LIL_11938 PF17871 AAA lid domain LIL_11938 PF07724 AAA domain (Cdc48 subfamily) LIL_11939 PF02617 ATP-dependent Clp protease adaptor protein ClpS LIL_11941 PF08281 Sigma-70, region 4 LIL_11941 PF04542 Sigma-70 region 2 LIL_11943 PF13538 UvrD-like helicase C-terminal domain LIL_11944 PF00291 Pyridoxal-phosphate dependent enzyme LIL_11945 PF00694 Aconitase C-terminal domain LIL_11946 PF00330 Aconitase family (aconitate hydratase) LIL_11948 PF00005 ABC transporter LIL_11948 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIL_11949 PF13580 SIS domain LIL_11951 PF00535 Glycosyl transferase family 2 LIL_11954 PF00958 GMP synthase C terminal domain LIL_11954 PF00117 Glutamine amidotransferase class-I LIL_11954 PF02540 NAD synthase LIL_11955 PF14489 QueF-like protein LIL_11956 PF04193 PQ loop repeat LIL_11959 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LIL_11959 PF02154 Flagellar motor switch protein FliM LIL_11962 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LIL_11963 PF00206 Lyase LIL_11963 PF14698 Argininosuccinate lyase C-terminal LIL_11966 PF01145 SPFH domain / Band 7 family LIL_11967 PF01145 SPFH domain / Band 7 family LIL_11968 PF05598 Transposase domain (DUF772) LIL_11969 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LIL_11970 PF17862 AAA+ lid domain LIL_11970 PF01434 Peptidase family M41 LIL_11970 PF00004 ATPase family associated with various cellular activities (AAA) LIL_11975 PF01053 Cys/Met metabolism PLP-dependent enzyme LIL_11976 PF00561 alpha/beta hydrolase fold LIL_11977 PF00561 alpha/beta hydrolase fold LIL_11977 PF07021 Methionine biosynthesis protein MetW LIL_11978 PF07478 D-ala D-ala ligase C-terminus LIL_11978 PF01820 D-ala D-ala ligase N-terminus LIL_11980 PF02405 Permease MlaE LIL_11981 PF00005 ABC transporter LIL_11986 PF08245 Mur ligase middle domain LIL_11986 PF02875 Mur ligase family, glutamate ligase domain LIL_11986 PF01225 Mur ligase family, catalytic domain LIL_11987 PF03033 Glycosyltransferase family 28 N-terminal domain LIL_11987 PF04101 Glycosyltransferase family 28 C-terminal domain LIL_11988 PF01098 Cell cycle protein LIL_11989 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LIL_11989 PF00953 Glycosyl transferase family 4 LIL_11990 PF08245 Mur ligase middle domain LIL_11990 PF02875 Mur ligase family, glutamate ligase domain LIL_11992 PF01795 MraW methylase family LIL_11993 PF01230 HIT domain LIL_11994 PF03705 CheR methyltransferase, all-alpha domain LIL_11994 PF01739 CheR methyltransferase, SAM binding domain LIL_12008 PF07075 Protein of unknown function (DUF1343) LIL_12013 PF00669 Bacterial flagellin N-terminal helical region LIL_12013 PF00700 Bacterial flagellin C-terminal helical region LIL_12014 PF00669 Bacterial flagellin N-terminal helical region LIL_12014 PF00700 Bacterial flagellin C-terminal helical region LIL_12018 PF00512 His Kinase A (phospho-acceptor) domain LIL_12018 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12018 PF00672 HAMP domain LIL_12019 PF00486 Transcriptional regulatory protein, C terminal LIL_12019 PF00072 Response regulator receiver domain LIL_12020 PF00676 Dehydrogenase E1 component LIL_12021 PF02779 Transketolase, pyrimidine binding domain LIL_12021 PF00364 Biotin-requiring enzyme LIL_12021 PF02780 Transketolase, C-terminal domain LIL_12022 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LIL_12022 PF02817 e3 binding domain LIL_12022 PF00364 Biotin-requiring enzyme LIL_12023 PF01706 FliG C-terminal domain LIL_12023 PF14842 FliG N-terminal domain LIL_12023 PF14841 FliG middle domain LIL_12027 PF01066 CDP-alcohol phosphatidyltransferase LIL_12029 PF14883 Hypothetical glycosyl hydrolase family 13 LIL_12029 PF01522 Polysaccharide deacetylase LIL_12030 PF07238 PilZ domain LIL_12030 PF03552 Cellulose synthase LIL_12030 PF00535 Glycosyl transferase family 2 LIL_12030 PF03170 Bacterial cellulose synthase subunit LIL_12032 PF00152 tRNA synthetases class II (D, K and N) LIL_12032 PF01336 OB-fold nucleic acid binding domain LIL_12035 PF03808 Glycosyl transferase WecB/TagA/CpsF family LIL_12036 PF02581 Thiamine monophosphate synthase LIL_12038 PF04452 RNA methyltransferase LIL_12040 PF00571 CBS domain LIL_12040 PF00478 IMP dehydrogenase / GMP reductase domain LIL_12042 PF10388 EAL-domain associated signalling protein domain LIL_12042 PF00563 EAL domain LIL_12047 PF00535 Glycosyl transferase family 2 LIL_12051 PF04376 Arginine-tRNA-protein transferase, N terminus LIL_12051 PF04377 Arginine-tRNA-protein transferase, C terminus LIL_12053 PF13456 Reverse transcriptase-like LIL_12053 PF00300 Histidine phosphatase superfamily (branch 1) LIL_12055 PF13735 tRNA nucleotidyltransferase domain 2 putative LIL_12055 PF12627 Probable RNA and SrmB- binding site of polymerase A LIL_12055 PF01743 Poly A polymerase head domain LIL_12058 PF00873 AcrB/AcrD/AcrF family LIL_12059 PF00873 AcrB/AcrD/AcrF family LIL_12061 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LIL_12065 PF07516 SecA Wing and Scaffold domain LIL_12065 PF01043 SecA preprotein cross-linking domain LIL_12065 PF07517 SecA DEAD-like domain LIL_12066 PF00117 Glutamine amidotransferase class-I LIL_12066 PF02540 NAD synthase LIL_12066 PF00958 GMP synthase C terminal domain LIL_12067 PF08534 Redoxin LIL_12072 PF00574 Clp protease LIL_12075 PF03952 Enolase, N-terminal domain LIL_12075 PF00113 Enolase, C-terminal TIM barrel domain LIL_12091 PF02577 Bifunctional nuclease LIL_12093 PF07690 Major Facilitator Superfamily LIL_12096 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_12096 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_12096 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_12098 PF00085 Thioredoxin LIL_12100 PF02416 mttA/Hcf106 family LIL_12101 PF00902 Sec-independent protein translocase protein (TatC) LIL_12104 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LIL_12108 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LIL_12108 PF02806 Alpha amylase, C-terminal all-beta domain LIL_12108 PF00128 Alpha amylase, catalytic domain LIL_12111 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIL_12111 PF01842 ACT domain LIL_12111 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIL_12117 PF00561 alpha/beta hydrolase fold LIL_12121 PF00890 FAD binding domain LIL_12121 PF02910 Fumarate reductase flavoprotein C-term LIL_12122 PF13085 2Fe-2S iron-sulfur cluster binding domain LIL_12129 PF00679 Elongation factor G C-terminus LIL_12129 PF00009 Elongation factor Tu GTP binding domain LIL_12129 PF03144 Elongation factor Tu domain 2 LIL_12129 PF06421 GTP-binding protein LepA C-terminus LIL_12136 PF10431 C-terminal, D2-small domain, of ClpB protein LIL_12136 PF02861 Clp amino terminal domain, pathogenicity island component LIL_12136 PF17871 AAA lid domain LIL_12136 PF00004 ATPase family associated with various cellular activities (AAA) LIL_12136 PF07724 AAA domain (Cdc48 subfamily) LIL_12137 PF00209 Sodium:neurotransmitter symporter family LIL_12138 PF13307 Helicase C-terminal domain LIL_12138 PF04851 Type III restriction enzyme, res subunit LIL_12145 PF00152 tRNA synthetases class II (D, K and N) LIL_12145 PF01336 OB-fold nucleic acid binding domain LIL_12146 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LIL_12146 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LIL_12147 PF05448 Acetyl xylan esterase (AXE1) LIL_12148 PF09190 DALR domain LIL_12148 PF01406 tRNA synthetases class I (C) catalytic domain LIL_12149 PF08032 RNA 2'-O ribose methyltransferase substrate binding LIL_12149 PF00588 SpoU rRNA Methylase family LIL_12151 PF00989 PAS fold LIL_12151 PF00512 His Kinase A (phospho-acceptor) domain LIL_12151 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12151 PF13426 PAS domain LIL_12151 PF13493 Domain of unknown function (DUF4118) LIL_12151 PF08447 PAS fold LIL_12152 PF00199 Catalase LIL_12152 PF06628 Catalase-related immune-responsive LIL_12154 PF01475 Ferric uptake regulator family LIL_12156 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIL_12156 PF00460 Flagella basal body rod protein LIL_12170 PF13276 HTH-like domain LIL_12170 PF00665 Integrase core domain LIL_12170 PF13333 Integrase core domain LIL_12178 PF03534 Salmonella virulence plasmid 65kDa B protein LIL_12178 PF03496 ADP-ribosyltransferase exoenzyme LIL_12188 PF00665 Integrase core domain LIL_12188 PF13333 Integrase core domain LIL_12188 PF13276 HTH-like domain LIL_12190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12190 PF00512 His Kinase A (phospho-acceptor) domain LIL_12190 PF07689 KaiB domain LIL_12191 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LIL_12191 PF00072 Response regulator receiver domain LIL_12191 PF01627 Hpt domain LIL_12191 PF00512 His Kinase A (phospho-acceptor) domain LIL_12191 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12191 PF00672 HAMP domain LIL_12192 PF01339 CheB methylesterase LIL_12193 PF03705 CheR methyltransferase, all-alpha domain LIL_12193 PF01739 CheR methyltransferase, SAM binding domain LIL_12199 PF02594 Uncharacterised ACR, YggU family COG1872 LIL_12200 PF03023 Lipid II flippase MurJ LIL_12205 PF02261 Aspartate decarboxylase LIL_12209 PF08668 HDOD domain LIL_12210 PF00005 ABC transporter LIL_12211 PF01131 DNA topoisomerase LIL_12211 PF01396 Topoisomerase DNA binding C4 zinc finger LIL_12211 PF01751 Toprim domain LIL_12213 PF00291 Pyridoxal-phosphate dependent enzyme LIL_12216 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_12217 PF10502 Signal peptidase, peptidase S26 LIL_12218 PF01590 GAF domain LIL_12218 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12218 PF00512 His Kinase A (phospho-acceptor) domain LIL_12218 PF08446 PAS fold LIL_12218 PF00360 Phytochrome region LIL_12219 PF00486 Transcriptional regulatory protein, C terminal LIL_12219 PF00072 Response regulator receiver domain LIL_12220 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LIL_12220 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LIL_12221 PF00162 Phosphoglycerate kinase LIL_12226 PF00121 Triosephosphate isomerase LIL_12229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12229 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIL_12229 PF00512 His Kinase A (phospho-acceptor) domain LIL_12233 PF02464 Competence-damaged protein LIL_12233 PF00994 Probable molybdopterin binding domain LIL_12234 PF03485 Arginyl tRNA synthetase N terminal domain LIL_12234 PF05746 DALR anticodon binding domain LIL_12234 PF00750 tRNA synthetases class I (R) LIL_12237 PF02565 Recombination protein O C terminal LIL_12237 PF11967 Recombination protein O N terminal LIL_12238 PF02130 Uncharacterized protein family UPF0054 LIL_12239 PF07697 7TM-HD extracellular LIL_12239 PF07698 7TM receptor with intracellular HD hydrolase LIL_12239 PF01966 HD domain LIL_12240 PF02562 PhoH-like protein LIL_12241 PF05598 Transposase domain (DUF772) LIL_12242 PF01336 OB-fold nucleic acid binding domain LIL_12242 PF02938 GAD domain LIL_12242 PF00152 tRNA synthetases class II (D, K and N) LIL_12243 PF03796 DnaB-like helicase C terminal domain LIL_12243 PF00772 DnaB-like helicase N terminal domain LIL_12244 PF01281 Ribosomal protein L9, N-terminal domain LIL_12244 PF03948 Ribosomal protein L9, C-terminal domain LIL_12245 PF01084 Ribosomal protein S18 LIL_12246 PF00436 Single-strand binding protein family LIL_12247 PF01250 Ribosomal protein S6 LIL_12248 PF09587 Bacterial capsule synthesis protein PGA_cap LIL_12250 PF01850 PIN domain LIL_12252 PF00939 Sodium:sulfate symporter transmembrane region LIL_12257 PF00483 Nucleotidyl transferase LIL_12258 PF16363 GDP-mannose 4,6 dehydratase LIL_12260 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LIL_12261 PF00535 Glycosyl transferase family 2 LIL_12261 PF00534 Glycosyl transferases group 1 LIL_12262 PF00535 Glycosyl transferase family 2 LIL_12263 PF00535 Glycosyl transferase family 2 LIL_12264 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_12265 PF05523 WxcM-like, C-terminal LIL_12266 PF03407 Nucleotide-diphospho-sugar transferase LIL_12271 PF02397 Bacterial sugar transferase LIL_12273 PF02350 UDP-N-acetylglucosamine 2-epimerase LIL_12274 PF01370 NAD dependent epimerase/dehydratase family LIL_12275 PF02719 Polysaccharide biosynthesis protein LIL_12275 PF08485 Polysaccharide biosynthesis protein C-terminal LIL_12276 PF00534 Glycosyl transferases group 1 LIL_12276 PF13439 Glycosyltransferase Family 4 LIL_12279 PF08241 Methyltransferase domain LIL_12283 PF02348 Cytidylyltransferase LIL_12287 PF12464 Maltose acetyltransferase LIL_12287 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_12289 PF03328 HpcH/HpaI aldolase/citrate lyase family LIL_12290 PF01380 SIS domain LIL_12290 PF00571 CBS domain LIL_12291 PF00793 DAHP synthetase I family LIL_12293 PF13649 Methyltransferase domain LIL_12295 PF03102 NeuB family LIL_12295 PF08666 SAF domain LIL_12296 PF02911 Formyl transferase, C-terminal domain LIL_12296 PF01370 NAD dependent epimerase/dehydratase family LIL_12296 PF00551 Formyl transferase LIL_12297 PF02348 Cytidylyltransferase LIL_12298 PF00795 Carbon-nitrogen hydrolase LIL_12299 PF00202 Aminotransferase class-III LIL_12303 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_12305 PF00664 ABC transporter transmembrane region LIL_12305 PF00005 ABC transporter LIL_12313 PF05175 Methyltransferase small domain LIL_12313 PF08468 Methyltransferase small domain N-terminal LIL_12314 PF00293 NUDIX domain LIL_12317 PF02779 Transketolase, pyrimidine binding domain LIL_12317 PF02780 Transketolase, C-terminal domain LIL_12318 PF00456 Transketolase, thiamine diphosphate binding domain LIL_12320 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_12321 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_12322 PF01370 NAD dependent epimerase/dehydratase family LIL_12323 PF01467 Cytidylyltransferase-like LIL_12323 PF00294 pfkB family carbohydrate kinase LIL_12324 PF00483 Nucleotidyl transferase LIL_12325 PF01370 NAD dependent epimerase/dehydratase family LIL_12326 PF13580 SIS domain LIL_12328 PF01370 NAD dependent epimerase/dehydratase family LIL_12336 PF00011 Hsp20/alpha crystallin family LIL_12337 PF00011 Hsp20/alpha crystallin family LIL_12341 PF02630 SCO1/SenC LIL_12342 PF07732 Multicopper oxidase LIL_12347 PF00905 Penicillin binding protein transpeptidase domain LIL_12347 PF05569 BlaR1 peptidase M56 LIL_12348 PF00999 Sodium/hydrogen exchanger family LIL_12349 PF01555 DNA methylase LIL_12351 PF00873 AcrB/AcrD/AcrF family LIL_12353 PF12146 Serine aminopeptidase, S33 LIL_12360 PF01791 DeoC/LacD family aldolase LIL_12363 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12363 PF00989 PAS fold LIL_12363 PF13188 PAS domain LIL_12363 PF13426 PAS domain LIL_12363 PF00512 His Kinase A (phospho-acceptor) domain LIL_12368 PF01584 CheW-like domain LIL_12371 PF01050 Mannose-6-phosphate isomerase LIL_12371 PF00483 Nucleotidyl transferase LIL_12373 PF17209 Hfq protein LIL_12376 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LIL_12378 PF13180 PDZ domain LIL_12378 PF03572 Peptidase family S41 LIL_12379 PF02910 Fumarate reductase flavoprotein C-term LIL_12379 PF00890 FAD binding domain LIL_12386 PF05598 Transposase domain (DUF772) LIL_12396 PF01479 S4 domain LIL_12396 PF00849 RNA pseudouridylate synthase LIL_12398 PF01070 FMN-dependent dehydrogenase LIL_12402 PF00072 Response regulator receiver domain LIL_12402 PF00990 Diguanylate cyclase, GGDEF domain LIL_12403 PF03807 NADP oxidoreductase coenzyme F420-dependent LIL_12403 PF14748 Pyrroline-5-carboxylate reductase dimerisation LIL_12404 PF01168 Alanine racemase, N-terminal domain LIL_12412 PF03030 Inorganic H+ pyrophosphatase LIL_12417 PF16657 Maltogenic Amylase, C-terminal domain LIL_12417 PF00128 Alpha amylase, catalytic domain LIL_12418 PF02875 Mur ligase family, glutamate ligase domain LIL_12418 PF01225 Mur ligase family, catalytic domain LIL_12418 PF08245 Mur ligase middle domain LIL_12419 PF00731 AIR carboxylase LIL_12420 PF02222 ATP-grasp domain LIL_12420 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LIL_12422 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LIL_12422 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LIL_12422 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LIL_12423 PF00005 ABC transporter LIL_12425 PF04002 RadC-like JAB domain LIL_12431 PF00814 Glycoprotease family LIL_12432 PF13180 PDZ domain LIL_12432 PF03572 Peptidase family S41 LIL_12434 PF00717 Peptidase S24-like LIL_12434 PF01726 LexA DNA binding domain LIL_12446 PF00561 alpha/beta hydrolase fold LIL_12455 PF01008 Initiation factor 2 subunit family LIL_12457 PF03775 Septum formation inhibitor MinC, C-terminal domain LIL_12463 PF13649 Methyltransferase domain LIL_12470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIL_12470 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIL_12475 PF07883 Cupin domain LIL_12475 PF01381 Helix-turn-helix LIL_12477 PF04287 tRNA pseudouridine synthase C LIL_12477 PF00849 RNA pseudouridylate synthase LIL_12478 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_12480 PF01551 Peptidase family M23 LIL_12480 PF01476 LysM domain LIL_12480 PF08525 Opacity-associated protein A N-terminal motif LIL_12481 PF01330 RuvA N terminal domain LIL_12481 PF07499 RuvA, C-terminal domain LIL_12482 PF01613 Flavin reductase like domain LIL_12489 PF18073 Rubredoxin metal binding domain LIL_12490 PF00570 HRDC domain LIL_12490 PF01612 3'-5' exonuclease LIL_12496 PF00850 Histone deacetylase domain LIL_12497 PF00224 Pyruvate kinase, barrel domain LIL_12497 PF02887 Pyruvate kinase, alpha/beta domain LIL_12498 PF00360 Phytochrome region LIL_12498 PF00990 Diguanylate cyclase, GGDEF domain LIL_12498 PF01590 GAF domain LIL_12498 PF00563 EAL domain LIL_12499 PF08448 PAS fold LIL_12499 PF00990 Diguanylate cyclase, GGDEF domain LIL_12500 PF00563 EAL domain LIL_12500 PF00990 Diguanylate cyclase, GGDEF domain LIL_12500 PF03707 Bacterial signalling protein N terminal repeat LIL_12501 PF00072 Response regulator receiver domain LIL_12501 PF00990 Diguanylate cyclase, GGDEF domain LIL_12502 PF00072 Response regulator receiver domain LIL_12502 PF00990 Diguanylate cyclase, GGDEF domain LIL_12504 PF05598 Transposase domain (DUF772) LIL_12505 PF00990 Diguanylate cyclase, GGDEF domain LIL_12506 PF00654 Voltage gated chloride channel LIL_12507 PF02769 AIR synthase related protein, C-terminal domain LIL_12507 PF00586 AIR synthase related protein, N-terminal domain LIL_12512 PF04134 Protein of unknown function, DUF393 LIL_12513 PF01055 Glycosyl hydrolases family 31 LIL_12520 PF08279 HTH domain LIL_12520 PF00072 Response regulator receiver domain LIL_12523 PF01569 PAP2 superfamily LIL_12524 PF01553 Acyltransferase LIL_12525 PF02310 B12 binding domain LIL_12525 PF01642 Methylmalonyl-CoA mutase LIL_12527 PF12697 Alpha/beta hydrolase family LIL_12529 PF00920 Dehydratase family LIL_12530 PF04307 LexA-binding, inner membrane-associated putative hydrolase LIL_12535 PF00672 HAMP domain LIL_12535 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_12535 PF02743 Cache domain LIL_12537 PF00535 Glycosyl transferase family 2 LIL_12542 PF00034 Cytochrome c LIL_12542 PF03150 Di-haem cytochrome c peroxidase LIL_12545 PF05958 tRNA (Uracil-5-)-methyltransferase LIL_12548 PF08486 Stage II sporulation protein LIL_12549 PF00005 ABC transporter LIL_12555 PF00156 Phosphoribosyl transferase domain LIL_12556 PF00795 Carbon-nitrogen hydrolase LIL_12556 PF02540 NAD synthase LIL_12559 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_12561 PF00465 Iron-containing alcohol dehydrogenase LIL_12562 PF01183 Glycosyl hydrolases family 25 LIL_12562 PF08239 Bacterial SH3 domain LIL_12564 PF02272 DHHA1 domain LIL_12564 PF17768 RecJ OB domain LIL_12564 PF10141 Single-strand DNA-specific exonuclease, C terminal domain LIL_12564 PF01368 DHH family LIL_12565 PF12627 Probable RNA and SrmB- binding site of polymerase A LIL_12565 PF12626 Polymerase A arginine-rich C-terminus LIL_12565 PF01743 Poly A polymerase head domain LIL_12567 PF01790 Prolipoprotein diacylglyceryl transferase LIL_12569 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LIL_12569 PF09397 Ftsk gamma domain LIL_12569 PF17854 FtsK alpha domain LIL_12569 PF01580 FtsK/SpoIIIE family LIL_12573 PF04011 LemA family LIL_12574 PF04536 TPM domain LIL_12577 PF02657 Fe-S metabolism associated domain LIL_12580 PF05406 WGR domain LIL_12584 PF05406 WGR domain LIL_12587 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_12592 PF03372 Endonuclease/Exonuclease/phosphatase family LIL_12593 PF01177 Asp/Glu/Hydantoin racemase LIL_12594 PF00155 Aminotransferase class I and II LIL_12595 PF13180 PDZ domain LIL_12595 PF17820 PDZ domain LIL_12607 PF00535 Glycosyl transferase family 2 LIL_12610 PF11999 Protein of unknown function (DUF3494) LIL_12610 PF02368 Bacterial Ig-like domain (group 2) LIL_12615 PF00206 Lyase LIL_12615 PF10397 Adenylosuccinate lyase C-terminus LIL_12618 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIL_12619 PF02824 TGS domain LIL_12619 PF04607 Region found in RelA / SpoT proteins LIL_12619 PF13291 ACT domain LIL_12620 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LIL_12620 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LIL_12629 PF01475 Ferric uptake regulator family LIL_12630 PF01702 Queuine tRNA-ribosyltransferase LIL_12631 PF01740 STAS domain LIL_12633 PF01548 Transposase LIL_12633 PF02371 Transposase IS116/IS110/IS902 family LIL_12634 PF01548 Transposase LIL_12635 PF01548 Transposase LIL_12637 PF10672 S-adenosylmethionine-dependent methyltransferase LIL_12643 PF00486 Transcriptional regulatory protein, C terminal LIL_12643 PF00072 Response regulator receiver domain LIL_12644 PF13493 Domain of unknown function (DUF4118) LIL_12644 PF13492 GAF domain LIL_12644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12644 PF00512 His Kinase A (phospho-acceptor) domain LIL_12644 PF02702 Osmosensitive K+ channel His kinase sensor domain LIL_12645 PF02669 K+-transporting ATPase, c chain LIL_12647 PF03814 Potassium-transporting ATPase A subunit LIL_12648 PF00069 Protein kinase domain LIL_12648 PF03793 PASTA domain LIL_12653 PF03781 Sulfatase-modifying factor enzyme 1 LIL_12657 PF01758 Sodium Bile acid symporter family LIL_12660 PF02803 Thiolase, C-terminal domain LIL_12660 PF00108 Thiolase, N-terminal domain LIL_12662 PF03150 Di-haem cytochrome c peroxidase LIL_12665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_12665 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_12665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_12666 PF02515 CoA-transferase family III LIL_12669 PF12146 Serine aminopeptidase, S33 LIL_12671 PF07715 TonB-dependent Receptor Plug Domain LIL_12671 PF00593 TonB dependent receptor LIL_12675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIL_12675 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIL_12676 PF08240 Alcohol dehydrogenase GroES-like domain LIL_12676 PF00107 Zinc-binding dehydrogenase LIL_12679 PF04551 GcpE protein LIL_12684 PF00149 Calcineurin-like phosphoesterase LIL_12686 PF00248 Aldo/keto reductase family LIL_12687 PF12848 ABC transporter LIL_12687 PF16326 ABC transporter C-terminal domain LIL_12687 PF00005 ABC transporter LIL_12692 PF01867 CRISPR associated protein Cas1 LIL_12692 PF01930 Domain of unknown function DUF83 LIL_12693 PF09827 CRISPR associated protein Cas2 LIL_12695 PF18019 HD domain LIL_12697 PF01905 CRISPR-associated negative auto-regulator DevR/Csa2 LIL_12700 PF00237 Ribosomal protein L22p/L17e LIL_12701 PF02384 N-6 DNA Methylase LIL_12701 PF12161 HsdM N-terminal domain LIL_12702 PF01420 Type I restriction modification DNA specificity domain LIL_12704 PF18766 SWI2/SNF2 ATPase LIL_12704 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LIL_12704 PF12008 Type I restriction and modification enzyme - subunit R C terminal LIL_12711 PF00512 His Kinase A (phospho-acceptor) domain LIL_12711 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIL_12711 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12717 PF00348 Polyprenyl synthetase LIL_12718 PF13369 Transglutaminase-like superfamily LIL_12720 PF00456 Transketolase, thiamine diphosphate binding domain LIL_12730 PF00672 HAMP domain LIL_12730 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_12737 PF01618 MotA/TolQ/ExbB proton channel family LIL_12739 PF02472 Biopolymer transport protein ExbD/TolR LIL_12743 PF00589 Phage integrase family LIL_12743 PF02899 Phage integrase, N-terminal SAM-like domain LIL_12744 PF03793 PASTA domain LIL_12744 PF00069 Protein kinase domain LIL_12745 PF04389 Peptidase family M28 LIL_12748 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LIL_12749 PF01850 PIN domain LIL_12756 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_12763 PF05406 WGR domain LIL_12764 PF05406 WGR domain LIL_12766 PF01964 Radical SAM ThiC family LIL_12770 PF06865 Pyrimidine/purine nucleoside phosphorylase LIL_12771 PF00106 short chain dehydrogenase LIL_12772 PF01061 ABC-2 type transporter LIL_12773 PF00005 ABC transporter LIL_12774 PF13538 UvrD-like helicase C-terminal domain LIL_12775 PF00580 UvrD/REP helicase N-terminal domain LIL_12775 PF13361 UvrD-like helicase C-terminal domain LIL_12775 PF12705 PD-(D/E)XK nuclease superfamily LIL_12776 PF17946 RecC C-terminal domain LIL_12777 PF09382 RQC domain LIL_12777 PF16124 RecQ zinc-binding LIL_12777 PF00570 HRDC domain LIL_12777 PF00271 Helicase conserved C-terminal domain LIL_12777 PF00270 DEAD/DEAH box helicase LIL_12781 PF03190 Protein of unknown function, DUF255 LIL_12783 PF00310 Glutamine amidotransferases class-II LIL_12783 PF01493 GXGXG motif LIL_12783 PF04898 Glutamate synthase central domain LIL_12783 PF01645 Conserved region in glutamate synthase LIL_12785 PF01694 Rhomboid family LIL_12788 PF07669 Eco57I restriction-modification methylase LIL_12791 PF00675 Insulinase (Peptidase family M16) LIL_12791 PF05193 Peptidase M16 inactive domain LIL_12792 PF00013 KH domain LIL_12792 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LIL_12792 PF01138 3' exoribonuclease family, domain 1 LIL_12792 PF03725 3' exoribonuclease family, domain 2 LIL_12792 PF00575 S1 RNA binding domain LIL_12793 PF00312 Ribosomal protein S15 LIL_12794 PF01509 TruB family pseudouridylate synthase (N terminal domain) LIL_12795 PF02033 Ribosome-binding factor A LIL_12796 PF11987 Translation-initiation factor 2 LIL_12796 PF00009 Elongation factor Tu GTP binding domain LIL_12796 PF04760 Translation initiation factor IF-2, N-terminal region LIL_12797 PF08529 NusA N-terminal domain LIL_12797 PF00575 S1 RNA binding domain LIL_12797 PF13184 NusA-like KH domain LIL_12798 PF02576 RimP N-terminal domain LIL_12800 PF01256 Carbohydrate kinase LIL_12800 PF03853 YjeF-related protein N-terminus LIL_12806 PF12146 Serine aminopeptidase, S33 LIL_12807 PF07690 Major Facilitator Superfamily LIL_12808 PF13419 Haloacid dehalogenase-like hydrolase LIL_12810 PF01548 Transposase LIL_12811 PF01548 Transposase LIL_12812 PF01548 Transposase LIL_12815 PF00378 Enoyl-CoA hydratase/isomerase LIL_12817 PF00850 Histone deacetylase domain LIL_12823 PF02142 MGS-like domain LIL_12827 PF07669 Eco57I restriction-modification methylase LIL_12828 PF01047 MarR family LIL_12831 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LIL_12832 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LIL_12833 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LIL_12834 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LIL_12836 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LIL_12836 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LIL_12836 PF10531 SLBB domain LIL_12837 PF00146 NADH dehydrogenase LIL_12838 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LIL_12839 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LIL_12840 PF00361 Proton-conducting membrane transporter LIL_12840 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LIL_12841 PF00361 Proton-conducting membrane transporter LIL_12842 PF00361 Proton-conducting membrane transporter LIL_12847 PF04542 Sigma-70 region 2 LIL_12847 PF08281 Sigma-70, region 4 LIL_12850 PF08453 Peptidase family M9 N-terminal LIL_12850 PF18496 Collagenase G catalytic helper subdomain LIL_12850 PF01752 Collagenase LIL_12851 PF00171 Aldehyde dehydrogenase family LIL_12852 PF08668 HDOD domain LIL_12854 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIL_12854 PF00205 Thiamine pyrophosphate enzyme, central domain LIL_12854 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LIL_12855 PF08534 Redoxin LIL_12856 PF01740 STAS domain LIL_12860 PF01467 Cytidylyltransferase-like LIL_12861 PF00171 Aldehyde dehydrogenase family LIL_12862 PF00696 Amino acid kinase family LIL_12863 PF01018 GTP1/OBG LIL_12863 PF01926 50S ribosome-binding GTPase LIL_12864 PF01016 Ribosomal L27 protein LIL_12866 PF00829 Ribosomal prokaryotic L21 protein LIL_12869 PF00682 HMGL-like LIL_12872 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LIL_12874 PF04055 Radical SAM superfamily LIL_12875 PF00218 Indole-3-glycerol phosphate synthase LIL_12877 PF08245 Mur ligase middle domain LIL_12877 PF02875 Mur ligase family, glutamate ligase domain LIL_12881 PF03309 Type III pantothenate kinase LIL_12882 PF03099 Biotin/lipoate A/B protein ligase family LIL_12882 PF02237 Biotin protein ligase C terminal domain LIL_12882 PF08279 HTH domain LIL_12884 PF00108 Thiolase, N-terminal domain LIL_12884 PF02803 Thiolase, C-terminal domain LIL_12889 PF01641 SelR domain LIL_12897 PF00072 Response regulator receiver domain LIL_12897 PF00196 Bacterial regulatory proteins, luxR family LIL_12898 PF07730 Histidine kinase LIL_12902 PF05491 RuvB C-terminal winged helix domain LIL_12902 PF05496 Holliday junction DNA helicase RuvB P-loop domain LIL_12902 PF17864 RuvB AAA lid domain LIL_12903 PF13180 PDZ domain LIL_12903 PF17820 PDZ domain LIL_12904 PF13180 PDZ domain LIL_12905 PF02223 Thymidylate kinase LIL_12910 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LIL_12918 PF01464 Transglycosylase SLT domain LIL_12918 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LIL_12919 PF00285 Citrate synthase, C-terminal domain LIL_12920 PF17785 PUA-like domain LIL_12920 PF10672 S-adenosylmethionine-dependent methyltransferase LIL_12922 PF00588 SpoU rRNA Methylase family LIL_12922 PF08032 RNA 2'-O ribose methyltransferase substrate binding LIL_12924 PF12706 Beta-lactamase superfamily domain LIL_12927 PF13333 Integrase core domain LIL_12927 PF00665 Integrase core domain LIL_12927 PF13276 HTH-like domain LIL_12928 PF05154 TM2 domain LIL_12931 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LIL_12931 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LIL_12933 PF00155 Aminotransferase class I and II LIL_12940 PF01196 Ribosomal protein L17 LIL_12941 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LIL_12941 PF01000 RNA polymerase Rpb3/RpoA insert domain LIL_12941 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LIL_12942 PF01479 S4 domain LIL_12942 PF00163 Ribosomal protein S4/S9 N-terminal domain LIL_12943 PF00411 Ribosomal protein S11 LIL_12944 PF00416 Ribosomal protein S13/S18 LIL_12945 PF01176 Translation initiation factor 1A / IF-1 LIL_12947 PF00344 SecY translocase LIL_12948 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LIL_12949 PF00327 Ribosomal protein L30p/L7e LIL_12950 PF03719 Ribosomal protein S5, C-terminal domain LIL_12950 PF00333 Ribosomal protein S5, N-terminal domain LIL_12951 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LIL_12952 PF00347 Ribosomal protein L6 LIL_12953 PF00410 Ribosomal protein S8 LIL_12954 PF00281 Ribosomal protein L5 LIL_12954 PF00673 ribosomal L5P family C-terminus LIL_12955 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LIL_12955 PF00467 KOW motif LIL_12956 PF00238 Ribosomal protein L14p/L23e LIL_12957 PF00366 Ribosomal protein S17 LIL_12958 PF00831 Ribosomal L29 protein LIL_12959 PF00252 Ribosomal protein L16p/L10e LIL_12960 PF00189 Ribosomal protein S3, C-terminal domain LIL_12960 PF07650 KH domain LIL_12961 PF00237 Ribosomal protein L22p/L17e LIL_12962 PF00203 Ribosomal protein S19 LIL_12963 PF03947 Ribosomal Proteins L2, C-terminal domain LIL_12963 PF00181 Ribosomal Proteins L2, RNA binding domain LIL_12964 PF00276 Ribosomal protein L23 LIL_12965 PF00573 Ribosomal protein L4/L1 family LIL_12966 PF00297 Ribosomal protein L3 LIL_12967 PF00338 Ribosomal protein S10p/S20e LIL_12968 PF03143 Elongation factor Tu C-terminal domain LIL_12968 PF03144 Elongation factor Tu domain 2 LIL_12968 PF00009 Elongation factor Tu GTP binding domain LIL_12969 PF14492 Elongation Factor G, domain II LIL_12969 PF03764 Elongation factor G, domain IV LIL_12969 PF00009 Elongation factor Tu GTP binding domain LIL_12969 PF03144 Elongation factor Tu domain 2 LIL_12969 PF00679 Elongation factor G C-terminus LIL_12976 PF02142 MGS-like domain LIL_12976 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LIL_12976 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIL_12977 PF00884 Sulfatase LIL_12978 PF02075 Crossover junction endodeoxyribonuclease RuvC LIL_12979 PF01709 Transcriptional regulator LIL_12988 PF01464 Transglycosylase SLT domain LIL_12988 PF10145 Phage-related minor tail protein LIL_12988 PF01551 Peptidase family M23 LIL_12993 PF05406 WGR domain LIL_12994 PF07728 AAA domain (dynein-related subfamily) LIL_12996 PF05762 VWA domain containing CoxE-like protein LIL_13000 PF00474 Sodium:solute symporter family LIL_13001 PF13840 ACT domain LIL_13001 PF01842 ACT domain LIL_13001 PF00696 Amino acid kinase family LIL_13005 PF09704 CRISPR-associated protein (Cas_Cas5) LIL_13009 PF01867 CRISPR associated protein Cas1 LIL_13010 PF09827 CRISPR associated protein Cas2 LIL_13015 PF00672 HAMP domain LIL_13015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_13016 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_13016 PF00672 HAMP domain LIL_13018 PF13186 Iron-sulfur cluster-binding domain LIL_13020 PF00285 Citrate synthase, C-terminal domain LIL_13023 PF03150 Di-haem cytochrome c peroxidase LIL_13023 PF00034 Cytochrome c LIL_13024 PF00753 Metallo-beta-lactamase superfamily LIL_13027 PF01618 MotA/TolQ/ExbB proton channel family LIL_13032 PF01238 Phosphomannose isomerase type I LIL_13035 PF01740 STAS domain LIL_13038 PF04851 Type III restriction enzyme, res subunit LIL_13038 PF00271 Helicase conserved C-terminal domain LIL_13038 PF12344 Ultra-violet resistance protein B LIL_13038 PF02151 UvrB/uvrC motif LIL_13038 PF17757 UvrB interaction domain LIL_13040 PF00588 SpoU rRNA Methylase family LIL_13041 PF00575 S1 RNA binding domain LIL_13043 PF08668 HDOD domain LIL_13044 PF00535 Glycosyl transferase family 2 LIL_13046 PF13276 HTH-like domain LIL_13046 PF13333 Integrase core domain LIL_13046 PF00665 Integrase core domain LIL_13050 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LIL_13050 PF08501 Shikimate dehydrogenase substrate binding domain LIL_13051 PF08245 Mur ligase middle domain LIL_13055 PF00528 Binding-protein-dependent transport system inner membrane component LIL_13061 PF07238 PilZ domain LIL_13061 PF00535 Glycosyl transferase family 2 LIL_13064 PF00270 DEAD/DEAH box helicase LIL_13064 PF00271 Helicase conserved C-terminal domain LIL_13064 PF09382 RQC domain LIL_13064 PF16124 RecQ zinc-binding LIL_13064 PF00570 HRDC domain LIL_13068 PF02445 Quinolinate synthetase A protein LIL_13074 PF12327 FtsZ family, C-terminal domain LIL_13074 PF00091 Tubulin/FtsZ family, GTPase domain LIL_13075 PF02491 SHS2 domain inserted in FTSA LIL_13079 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LIL_13082 PF01266 FAD dependent oxidoreductase LIL_13084 PF01625 Peptide methionine sulfoxide reductase LIL_13088 PF00403 Heavy-metal-associated domain LIL_13090 PF02583 Metal-sensitive transcriptional repressor LIL_13100 PF00873 AcrB/AcrD/AcrF family LIL_13103 PF00484 Carbonic anhydrase LIL_13107 PF09335 SNARE associated Golgi protein LIL_13111 PF13145 PPIC-type PPIASE domain LIL_13112 PF12228 Protein of unknown function (DUF3604) LIL_13115 PF00672 HAMP domain LIL_13115 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_13115 PF02743 Cache domain LIL_13118 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_13118 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_13118 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_13122 PF02618 YceG-like family LIL_13123 PF01502 Phosphoribosyl-AMP cyclohydrolase LIL_13124 PF00873 AcrB/AcrD/AcrF family LIL_13129 PF07075 Protein of unknown function (DUF1343) LIL_13132 PF01965 DJ-1/PfpI family LIL_13138 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_13146 PF13520 Amino acid permease LIL_13148 PF01142 tRNA pseudouridine synthase D (TruD) LIL_13149 PF01047 MarR family LIL_13151 PF07681 DoxX LIL_13156 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_13156 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LIL_13163 PF00817 impB/mucB/samB family LIL_13163 PF11799 impB/mucB/samB family C-terminal domain LIL_13163 PF11798 IMS family HHH motif LIL_13164 PF00487 Fatty acid desaturase LIL_13173 PF00958 GMP synthase C terminal domain LIL_13173 PF00117 Glutamine amidotransferase class-I LIL_13173 PF03352 Methyladenine glycosylase LIL_13173 PF13302 Acetyltransferase (GNAT) domain LIL_13173 PF13673 Acetyltransferase (GNAT) domain LIL_13181 PF01161 Phosphatidylethanolamine-binding protein LIL_13182 PF00672 HAMP domain LIL_13182 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_13184 PF05726 Pirin C-terminal cupin domain LIL_13184 PF02678 Pirin LIL_13186 PF00512 His Kinase A (phospho-acceptor) domain LIL_13186 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13186 PF09308 LuxQ, periplasmic LIL_13186 PF00072 Response regulator receiver domain LIL_13189 PF01121 Dephospho-CoA kinase LIL_13192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13192 PF07730 Histidine kinase LIL_13193 PF00072 Response regulator receiver domain LIL_13193 PF00196 Bacterial regulatory proteins, luxR family LIL_13195 PF00873 AcrB/AcrD/AcrF family LIL_13196 PF01343 Peptidase family S49 LIL_13198 PF01975 Survival protein SurE LIL_13201 PF01370 NAD dependent epimerase/dehydratase family LIL_13201 PF08338 Domain of unknown function (DUF1731) LIL_13207 PF00288 GHMP kinases N terminal domain LIL_13207 PF08544 GHMP kinases C terminal LIL_13207 PF10509 Galactokinase galactose-binding signature LIL_13208 PF00342 Phosphoglucose isomerase LIL_13211 PF00483 Nucleotidyl transferase LIL_13212 PF01636 Phosphotransferase enzyme family LIL_13213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13213 PF00512 His Kinase A (phospho-acceptor) domain LIL_13213 PF00989 PAS fold LIL_13213 PF08447 PAS fold LIL_13214 PF00989 PAS fold LIL_13214 PF13426 PAS domain LIL_13214 PF13188 PAS domain LIL_13214 PF00512 His Kinase A (phospho-acceptor) domain LIL_13214 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13217 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_13220 PF00563 EAL domain LIL_13220 PF12792 CSS motif domain associated with EAL LIL_13222 PF05233 PHB accumulation regulatory domain LIL_13222 PF07879 PHB/PHA accumulation regulator DNA-binding domain LIL_13228 PF01588 Putative tRNA binding domain LIL_13228 PF09334 tRNA synthetases class I (M) LIL_13229 PF01966 HD domain LIL_13229 PF08335 GlnD PII-uridylyltransferase LIL_13229 PF01842 ACT domain LIL_13229 PF01909 Nucleotidyltransferase domain LIL_13232 PF01370 NAD dependent epimerase/dehydratase family LIL_13233 PF00873 AcrB/AcrD/AcrF family LIL_13235 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_13235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_13235 PF12806 Acetyl-CoA dehydrogenase C-terminal like LIL_13236 PF00990 Diguanylate cyclase, GGDEF domain LIL_13236 PF03707 Bacterial signalling protein N terminal repeat LIL_13236 PF00563 EAL domain LIL_13237 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LIL_13237 PF01565 FAD binding domain LIL_13241 PF02441 Flavoprotein LIL_13241 PF04127 DNA / pantothenate metabolism flavoprotein LIL_13242 PF02441 Flavoprotein LIL_13242 PF04127 DNA / pantothenate metabolism flavoprotein LIL_13243 PF01595 Cyclin M transmembrane N-terminal domain LIL_13243 PF00571 CBS domain LIL_13243 PF03471 Transporter associated domain LIL_13245 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LIL_13245 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LIL_13250 PF17191 RecG wedge domain LIL_13250 PF00270 DEAD/DEAH box helicase LIL_13250 PF00271 Helicase conserved C-terminal domain LIL_13254 PF16363 GDP-mannose 4,6 dehydratase LIL_13258 PF03543 Yersinia/Haemophilus virulence surface antigen LIL_13258 PF05860 haemagglutination activity domain LIL_13258 PF13332 Hemagglutinin repeat LIL_13258 PF13018 Extended Signal Peptide of Type V secretion system LIL_13258 PF02661 Fic/DOC family LIL_13260 PF01817 Chorismate mutase type II LIL_13260 PF00793 DAHP synthetase I family LIL_13261 PF02548 Ketopantoate hydroxymethyltransferase LIL_13262 PF02152 Dihydroneopterin aldolase LIL_13262 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LIL_13263 PF01695 IstB-like ATP binding protein LIL_13266 PF16363 GDP-mannose 4,6 dehydratase LIL_13267 PF01554 MatE LIL_13271 PF02386 Cation transport protein LIL_13273 PF00248 Aldo/keto reductase family LIL_13275 PF00708 Acylphosphatase LIL_13277 PF00293 NUDIX domain LIL_13279 PF03009 Glycerophosphoryl diester phosphodiesterase family LIL_13284 PF00999 Sodium/hydrogen exchanger family LIL_13284 PF02080 TrkA-C domain LIL_13284 PF03471 Transporter associated domain LIL_13286 PF00583 Acetyltransferase (GNAT) family LIL_13288 PF02310 B12 binding domain LIL_13288 PF04055 Radical SAM superfamily LIL_13289 PF01627 Hpt domain LIL_13289 PF00512 His Kinase A (phospho-acceptor) domain LIL_13289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13289 PF00072 Response regulator receiver domain LIL_13290 PF03193 RsgA GTPase LIL_13291 PF05199 GMC oxidoreductase LIL_13291 PF00732 GMC oxidoreductase LIL_13292 PF05199 GMC oxidoreductase LIL_13295 PF03372 Endonuclease/Exonuclease/phosphatase family LIL_13298 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_13299 PF05199 GMC oxidoreductase LIL_13302 PF01545 Cation efflux family LIL_13302 PF16916 Dimerisation domain of Zinc Transporter LIL_13304 PF00905 Penicillin binding protein transpeptidase domain LIL_13304 PF00912 Transglycosylase LIL_13305 PF01872 RibD C-terminal domain LIL_13316 PF03147 Ferredoxin-fold anticodon binding domain LIL_13316 PF01588 Putative tRNA binding domain LIL_13316 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LIL_13316 PF03483 B3/4 domain LIL_13316 PF03484 tRNA synthetase B5 domain LIL_13317 PF00176 SNF2 family N-terminal domain LIL_13317 PF00271 Helicase conserved C-terminal domain LIL_13319 PF03279 Bacterial lipid A biosynthesis acyltransferase LIL_13320 PF00719 Inorganic pyrophosphatase LIL_13321 PF07690 Major Facilitator Superfamily LIL_13327 PF00270 DEAD/DEAH box helicase LIL_13327 PF00271 Helicase conserved C-terminal domain LIL_13328 PF03781 Sulfatase-modifying factor enzyme 1 LIL_13329 PF00106 short chain dehydrogenase LIL_13332 PF03641 Possible lysine decarboxylase LIL_13335 PF03819 MazG nucleotide pyrophosphohydrolase domain LIL_13337 PF00072 Response regulator receiver domain LIL_13337 PF00486 Transcriptional regulatory protein, C terminal LIL_13339 PF00180 Isocitrate/isopropylmalate dehydrogenase LIL_13346 PF00795 Carbon-nitrogen hydrolase LIL_13347 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LIL_13358 PF02567 Phenazine biosynthesis-like protein LIL_13359 PF00156 Phosphoribosyl transferase domain LIL_13360 PF01612 3'-5' exonuclease LIL_13360 PF00570 HRDC domain LIL_13361 PF00293 NUDIX domain LIL_13365 PF08281 Sigma-70, region 4 LIL_13365 PF04542 Sigma-70 region 2 LIL_13368 PF00486 Transcriptional regulatory protein, C terminal LIL_13368 PF00072 Response regulator receiver domain LIL_13369 PF16736 Single Cache-like LIL_13369 PF00512 His Kinase A (phospho-acceptor) domain LIL_13369 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13369 PF00989 PAS fold LIL_13370 PF01960 ArgJ family LIL_13379 PF01575 MaoC like domain LIL_13380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_13380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_13380 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_13381 PF01653 NAD-dependent DNA ligase adenylation domain LIL_13381 PF00533 BRCA1 C Terminus (BRCT) domain LIL_13381 PF03120 NAD-dependent DNA ligase OB-fold domain LIL_13382 PF01476 LysM domain LIL_13382 PF01551 Peptidase family M23 LIL_13384 PF08281 Sigma-70, region 4 LIL_13384 PF04542 Sigma-70 region 2 LIL_13386 PF02698 DUF218 domain LIL_13394 PF01661 Macro domain LIL_13398 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LIL_13398 PF00378 Enoyl-CoA hydratase/isomerase LIL_13398 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LIL_13399 PF02803 Thiolase, C-terminal domain LIL_13399 PF00108 Thiolase, N-terminal domain LIL_13410 PF01409 tRNA synthetases class II core domain (F) LIL_13410 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LIL_13411 PF01225 Mur ligase family, catalytic domain LIL_13411 PF02875 Mur ligase family, glutamate ligase domain LIL_13411 PF08245 Mur ligase middle domain LIL_13416 PF00005 ABC transporter LIL_13421 PF07504 Fungalysin/Thermolysin Propeptide Motif LIL_13421 PF03413 Peptidase propeptide and YPEB domain LIL_13421 PF02868 Thermolysin metallopeptidase, alpha-helical domain LIL_13421 PF01447 Thermolysin metallopeptidase, catalytic domain LIL_13422 PF02868 Thermolysin metallopeptidase, alpha-helical domain LIL_13422 PF03413 Peptidase propeptide and YPEB domain LIL_13422 PF01447 Thermolysin metallopeptidase, catalytic domain LIL_13422 PF07504 Fungalysin/Thermolysin Propeptide Motif LIL_13423 PF01447 Thermolysin metallopeptidase, catalytic domain LIL_13423 PF03413 Peptidase propeptide and YPEB domain LIL_13423 PF07504 Fungalysin/Thermolysin Propeptide Motif LIL_13423 PF02868 Thermolysin metallopeptidase, alpha-helical domain LIL_13424 PF01447 Thermolysin metallopeptidase, catalytic domain LIL_13424 PF02868 Thermolysin metallopeptidase, alpha-helical domain LIL_13424 PF03413 Peptidase propeptide and YPEB domain LIL_13424 PF07504 Fungalysin/Thermolysin Propeptide Motif LIL_13426 PF00764 Arginosuccinate synthase LIL_13427 PF01467 Cytidylyltransferase-like LIL_13428 PF00334 Nucleoside diphosphate kinase LIL_13430 PF18324 Hypothetical protein TT1725 LIL_13430 PF00180 Isocitrate/isopropylmalate dehydrogenase LIL_13432 PF00072 Response regulator receiver domain LIL_13432 PF00196 Bacterial regulatory proteins, luxR family LIL_13433 PF08448 PAS fold LIL_13433 PF08447 PAS fold LIL_13433 PF13426 PAS domain LIL_13433 PF05231 MASE1 LIL_13433 PF00990 Diguanylate cyclase, GGDEF domain LIL_13433 PF00563 EAL domain LIL_13436 PF05199 GMC oxidoreductase LIL_13436 PF00732 GMC oxidoreductase LIL_13438 PF00155 Aminotransferase class I and II LIL_13442 PF00691 OmpA family LIL_13442 PF13677 Membrane MotB of proton-channel complex MotA/MotB LIL_13448 PF00749 tRNA synthetases class I (E and Q), catalytic domain LIL_13450 PF03989 DNA gyrase C-terminal domain, beta-propeller LIL_13450 PF00521 DNA gyrase/topoisomerase IV, subunit A LIL_13451 PF00204 DNA gyrase B LIL_13451 PF00986 DNA gyrase B subunit, carboxyl terminus LIL_13451 PF01751 Toprim domain LIL_13451 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13456 PF01593 Flavin containing amine oxidoreductase LIL_13459 PF02277 Phosphoribosyltransferase LIL_13460 PF02654 Cobalamin-5-phosphate synthase LIL_13462 PF00092 von Willebrand factor type A domain LIL_13472 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LIL_13472 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LIL_13473 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_13473 PF14824 Sirohaem biosynthesis protein central LIL_13473 PF10414 Sirohaem synthase dimerisation region LIL_13474 PF14824 Sirohaem biosynthesis protein central LIL_13474 PF10414 Sirohaem synthase dimerisation region LIL_13474 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_13475 PF00009 Elongation factor Tu GTP binding domain LIL_13476 PF01507 Phosphoadenosine phosphosulfate reductase family LIL_13477 PF01507 Phosphoadenosine phosphosulfate reductase family LIL_13478 PF13276 HTH-like domain LIL_13478 PF00665 Integrase core domain LIL_13478 PF13333 Integrase core domain LIL_13481 PF17885 Styrene monooxygenase A putative substrate binding domain LIL_13483 PF00665 Integrase core domain LIL_13483 PF13333 Integrase core domain LIL_13483 PF13276 HTH-like domain LIL_13486 PF00528 Binding-protein-dependent transport system inner membrane component LIL_13487 PF12911 N-terminal TM domain of oligopeptide transport permease C LIL_13487 PF00528 Binding-protein-dependent transport system inner membrane component LIL_13488 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIL_13488 PF00005 ABC transporter LIL_13489 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIL_13489 PF00005 ABC transporter LIL_13493 PF05190 MutS family domain IV LIL_13493 PF00488 MutS domain V LIL_13493 PF05188 MutS domain II LIL_13493 PF01624 MutS domain I LIL_13493 PF05192 MutS domain III LIL_13497 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LIL_13497 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LIL_13498 PF17202 Single cache domain 3 LIL_13498 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_13498 PF00672 HAMP domain LIL_13500 PF00743 Flavin-binding monooxygenase-like LIL_13503 PF01048 Phosphorylase superfamily LIL_13504 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_13504 PF00672 HAMP domain LIL_13504 PF02743 Cache domain LIL_13505 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LIL_13505 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LIL_13507 PF13193 AMP-binding enzyme C-terminal domain LIL_13507 PF00501 AMP-binding enzyme LIL_13507 PF16177 Acetyl-coenzyme A synthetase N-terminus LIL_13508 PF01227 GTP cyclohydrolase I LIL_13509 PF00534 Glycosyl transferases group 1 LIL_13513 PF01370 NAD dependent epimerase/dehydratase family LIL_13516 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LIL_13516 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LIL_13517 PF02222 ATP-grasp domain LIL_13522 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LIL_13522 PF13244 Domain of unknown function (DUF4040) LIL_13522 PF00361 Proton-conducting membrane transporter LIL_13526 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LIL_13535 PF00005 ABC transporter LIL_13537 PF01180 Dihydroorotate dehydrogenase LIL_13543 PF02254 TrkA-N domain LIL_13543 PF00999 Sodium/hydrogen exchanger family LIL_13545 PF01047 MarR family LIL_13546 PF00255 Glutathione peroxidase LIL_13548 PF02254 TrkA-N domain LIL_13548 PF00999 Sodium/hydrogen exchanger family LIL_13552 PF02599 Global regulator protein family LIL_13553 PF02623 FliW protein LIL_13555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIL_13555 PF07196 Flagellin hook IN motif LIL_13557 PF01464 Transglycosylase SLT domain LIL_13557 PF01551 Peptidase family M23 LIL_13557 PF10145 Phage-related minor tail protein LIL_13566 PF04241 Protein of unknown function (DUF423) LIL_13568 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LIL_13572 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_13572 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LIL_13573 PF00175 Oxidoreductase NAD-binding domain LIL_13573 PF00970 Oxidoreductase FAD-binding domain LIL_13573 PF01383 CpcD/allophycocyanin linker domain LIL_13576 PF14437 MafB19-like deaminase LIL_13577 PF12169 DNA polymerase III subunits gamma and tau domain III LIL_13578 PF02575 YbaB/EbfC DNA-binding family LIL_13579 PF02132 RecR protein LIL_13579 PF13662 Toprim domain LIL_13581 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIL_13581 PF01464 Transglycosylase SLT domain LIL_13582 PF00691 OmpA family LIL_13583 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIL_13583 PF02403 Seryl-tRNA synthetase N-terminal domain LIL_13584 PF01026 TatD related DNase LIL_13591 PF02195 ParB-like nuclease domain LIL_13591 PF17762 HTH domain found in ParB protein LIL_13592 PF13614 AAA domain LIL_13593 PF02527 rRNA small subunit methyltransferase G LIL_13594 PF01546 Peptidase family M20/M25/M40 LIL_13594 PF07687 Peptidase dimerisation domain LIL_13596 PF13276 HTH-like domain LIL_13596 PF13333 Integrase core domain LIL_13596 PF00665 Integrase core domain LIL_13598 PF13932 GidA associated domain LIL_13598 PF01134 Glucose inhibited division protein A LIL_13599 PF01063 Amino-transferase class IV LIL_20002 PF02219 Methylenetetrahydrofolate reductase LIL_20004 PF02621 Menaquinone biosynthesis LIL_20008 PF03900 Porphobilinogen deaminase, C-terminal domain LIL_20008 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LIL_20009 PF00490 Delta-aminolevulinic acid dehydratase LIL_20010 PF00202 Aminotransferase class-III LIL_20011 PF00512 His Kinase A (phospho-acceptor) domain LIL_20011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20011 PF16736 Single Cache-like LIL_20011 PF00989 PAS fold LIL_20012 PF00072 Response regulator receiver domain LIL_20012 PF00486 Transcriptional regulatory protein, C terminal LIL_20013 PF01208 Uroporphyrinogen decarboxylase (URO-D) LIL_20014 PF04055 Radical SAM superfamily LIL_20014 PF06969 HemN C-terminal domain LIL_20016 PF03275 UDP-galactopyranose mutase LIL_20018 PF00762 Ferrochelatase LIL_20020 PF13614 AAA domain LIL_20021 PF17762 HTH domain found in ParB protein LIL_20021 PF02195 ParB-like nuclease domain LIL_20026 PF00665 Integrase core domain LIL_20026 PF13333 Integrase core domain LIL_20026 PF13276 HTH-like domain LIL_20031 PF00106 short chain dehydrogenase LIL_20032 PF01451 Low molecular weight phosphotyrosine protein phosphatase LIL_20033 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIL_20037 PF00106 short chain dehydrogenase LIL_20045 PF17863 AAA lid domain LIL_20045 PF07726 ATPase family associated with various cellular activities (AAA) LIL_20052 PF00183 Hsp90 protein LIL_20052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20056 PF01740 STAS domain LIL_20071 PF02683 Cytochrome C biogenesis protein transmembrane region LIL_20071 PF11412 Disulphide bond corrector protein DsbC LIL_20072 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LIL_20075 PF00550 Phosphopantetheine attachment site LIL_20076 PF00035 Double-stranded RNA binding motif LIL_20076 PF14622 Ribonuclease-III-like LIL_20078 PF01761 3-dehydroquinate synthase LIL_20085 PF00501 AMP-binding enzyme LIL_20086 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_20086 PF00672 HAMP domain LIL_20086 PF02743 Cache domain LIL_20090 PF13344 Haloacid dehalogenase-like hydrolase LIL_20090 PF00293 NUDIX domain LIL_20093 PF01022 Bacterial regulatory protein, arsR family LIL_20094 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LIL_20094 PF05221 S-adenosyl-L-homocysteine hydrolase LIL_20096 PF02310 B12 binding domain LIL_20096 PF02574 Homocysteine S-methyltransferase LIL_20096 PF02607 B12 binding domain LIL_20096 PF00809 Pterin binding enzyme LIL_20096 PF02965 Vitamin B12 dependent methionine synthase, activation domain LIL_20099 PF00365 Phosphofructokinase LIL_20100 PF00672 HAMP domain LIL_20100 PF07228 Stage II sporulation protein E (SpoIIE) LIL_20101 PF00696 Amino acid kinase family LIL_20102 PF00106 short chain dehydrogenase LIL_20104 PF00578 AhpC/TSA family LIL_20105 PF00672 HAMP domain LIL_20105 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_20108 PF00106 short chain dehydrogenase LIL_20109 PF00589 Phage integrase family LIL_20109 PF02899 Phage integrase, N-terminal SAM-like domain LIL_20110 PF01202 Shikimate kinase LIL_20112 PF03975 CheD chemotactic sensory transduction LIL_20117 PF12792 CSS motif domain associated with EAL LIL_20117 PF00563 EAL domain LIL_20130 PF00300 Histidine phosphatase superfamily (branch 1) LIL_20131 PF03186 CobD/Cbib protein LIL_20132 PF07685 CobB/CobQ-like glutamine amidotransferase domain LIL_20132 PF00155 Aminotransferase class I and II LIL_20132 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LIL_20133 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LIL_20135 PF07685 CobB/CobQ-like glutamine amidotransferase domain LIL_20135 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LIL_20136 PF12557 Cob(I)alamin adenosyltransferase N terminal LIL_20136 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LIL_20137 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_20138 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_20138 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LIL_20139 PF11760 Cobalamin synthesis G N-terminal LIL_20139 PF01890 Cobalamin synthesis G C-terminus LIL_20139 PF11761 Cobalamin biosynthesis central region LIL_20140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_20141 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_20142 PF02570 Precorrin-8X methylmutase LIL_20143 PF01888 CbiD LIL_20146 PF01903 CbiX LIL_20149 PF02719 Polysaccharide biosynthesis protein LIL_20152 PF01435 Peptidase family M48 LIL_20153 PF00156 Phosphoribosyl transferase domain LIL_20154 PF13180 PDZ domain LIL_20159 PF01126 Heme oxygenase LIL_20162 PF07715 TonB-dependent Receptor Plug Domain LIL_20162 PF00593 TonB dependent receptor LIL_20169 PF13654 AAA domain LIL_20169 PF05362 Lon protease (S16) C-terminal proteolytic domain LIL_20170 PF02547 Queuosine biosynthesis protein LIL_20175 PF03062 MBOAT, membrane-bound O-acyltransferase family LIL_20177 PF03062 MBOAT, membrane-bound O-acyltransferase family LIL_20179 PF03819 MazG nucleotide pyrophosphohydrolase domain LIL_20180 PF02472 Biopolymer transport protein ExbD/TolR LIL_20182 PF01209 ubiE/COQ5 methyltransferase family LIL_20186 PF01258 Prokaryotic dksA/traR C4-type zinc finger LIL_20188 PF13333 Integrase core domain LIL_20188 PF00665 Integrase core domain LIL_20188 PF13276 HTH-like domain LIL_20192 PF05598 Transposase domain (DUF772) LIL_20194 PF00563 EAL domain LIL_20194 PF05231 MASE1 LIL_20195 PF17158 Membrane-associated sensor, integral membrane domain LIL_20195 PF00990 Diguanylate cyclase, GGDEF domain LIL_20196 PF00990 Diguanylate cyclase, GGDEF domain LIL_20196 PF17151 Periplasmic sensor domain LIL_20197 PF09308 LuxQ, periplasmic LIL_20197 PF00512 His Kinase A (phospho-acceptor) domain LIL_20197 PF00072 Response regulator receiver domain LIL_20197 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20201 PF00474 Sodium:solute symporter family LIL_20209 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LIL_20209 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LIL_20217 PF01758 Sodium Bile acid symporter family LIL_20218 PF00266 Aminotransferase class-V LIL_20221 PF03741 Integral membrane protein TerC family LIL_20222 PF01642 Methylmalonyl-CoA mutase LIL_20223 PF02310 B12 binding domain LIL_20223 PF01642 Methylmalonyl-CoA mutase LIL_20230 PF01618 MotA/TolQ/ExbB proton channel family LIL_20231 PF02472 Biopolymer transport protein ExbD/TolR LIL_20234 PF01645 Conserved region in glutamate synthase LIL_20238 PF00512 His Kinase A (phospho-acceptor) domain LIL_20238 PF00989 PAS fold LIL_20238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20240 PF00596 Class II Aldolase and Adducin N-terminal domain LIL_20241 PF03079 ARD/ARD' family LIL_20242 PF01132 Elongation factor P (EF-P) OB domain LIL_20242 PF09285 Elongation factor P, C-terminal LIL_20242 PF08207 Elongation factor P (EF-P) KOW-like domain LIL_20244 PF12544 Lysine-2,3-aminomutase LIL_20244 PF04055 Radical SAM superfamily LIL_20251 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LIL_20252 PF17284 Spermidine synthase tetramerisation domain LIL_20254 PF02675 S-adenosylmethionine decarboxylase LIL_20256 PF01168 Alanine racemase, N-terminal domain LIL_20256 PF00842 Alanine racemase, C-terminal domain LIL_20261 PF16736 Single Cache-like LIL_20261 PF00512 His Kinase A (phospho-acceptor) domain LIL_20261 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20261 PF00989 PAS fold LIL_20262 PF01464 Transglycosylase SLT domain LIL_20263 PF01642 Methylmalonyl-CoA mutase LIL_20264 PF02310 B12 binding domain LIL_20264 PF01642 Methylmalonyl-CoA mutase LIL_20271 PF01618 MotA/TolQ/ExbB proton channel family LIL_20272 PF02472 Biopolymer transport protein ExbD/TolR LIL_20275 PF01645 Conserved region in glutamate synthase LIL_20279 PF00989 PAS fold LIL_20279 PF00512 His Kinase A (phospho-acceptor) domain LIL_20279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20281 PF00596 Class II Aldolase and Adducin N-terminal domain LIL_20282 PF03079 ARD/ARD' family LIL_20283 PF01132 Elongation factor P (EF-P) OB domain LIL_20283 PF08207 Elongation factor P (EF-P) KOW-like domain LIL_20283 PF09285 Elongation factor P, C-terminal LIL_20285 PF12544 Lysine-2,3-aminomutase LIL_20285 PF04055 Radical SAM superfamily LIL_20292 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LIL_20293 PF17284 Spermidine synthase tetramerisation domain LIL_20295 PF02675 S-adenosylmethionine decarboxylase LIL_20297 PF00842 Alanine racemase, C-terminal domain LIL_20297 PF01168 Alanine racemase, N-terminal domain LIL_20302 PF00512 His Kinase A (phospho-acceptor) domain LIL_20302 PF16736 Single Cache-like LIL_20302 PF00989 PAS fold LIL_20302 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20303 PF01464 Transglycosylase SLT domain LIL_20305 PF00694 Aconitase C-terminal domain LIL_20305 PF00330 Aconitase family (aconitate hydratase) LIL_20306 PF00691 OmpA family LIL_20307 PF00152 tRNA synthetases class II (D, K and N) LIL_20310 PF00072 Response regulator receiver domain LIL_20310 PF00486 Transcriptional regulatory protein, C terminal LIL_20312 PF01329 Pterin 4 alpha carbinolamine dehydratase LIL_20324 PF02887 Pyruvate kinase, alpha/beta domain LIL_20324 PF00224 Pyruvate kinase, barrel domain LIL_20324 PF00391 PEP-utilising enzyme, mobile domain LIL_20326 PF02774 Semialdehyde dehydrogenase, dimerisation domain LIL_20326 PF01118 Semialdehyde dehydrogenase, NAD binding domain LIL_20329 PF03062 MBOAT, membrane-bound O-acyltransferase family LIL_20334 PF06505 Activator of aromatic catabolism LIL_20334 PF02830 V4R domain LIL_20334 PF02954 Bacterial regulatory protein, Fis family LIL_20334 PF00158 Sigma-54 interaction domain LIL_20335 PF13614 AAA domain LIL_20336 PF17762 HTH domain found in ParB protein LIL_20336 PF02195 ParB-like nuclease domain LIL_30001 PF13614 AAA domain LIL_30050 PF13276 HTH-like domain LIL_30050 PF00665 Integrase core domain LIL_30050 PF13333 Integrase core domain LIL_30052 PF05231 MASE1 LIL_30052 PF00563 EAL domain LIL_30062 PF13276 HTH-like domain LIL_30062 PF00665 Integrase core domain LIL_30062 PF13333 Integrase core domain LIL_30064 PF04754 Putative transposase, YhgA-like LIL_40002 PF17762 HTH domain found in ParB protein LIL_40002 PF02195 ParB-like nuclease domain LIL_40007 PF03496 ADP-ribosyltransferase exoenzyme LIL_40007 PF03534 Salmonella virulence plasmid 65kDa B protein LIL_40024 PF13276 HTH-like domain LIL_40024 PF00665 Integrase core domain LIL_40024 PF13333 Integrase core domain LIL_40030 PF01934 Protein of unknown function DUF86 LIL_40044 PF02661 Fic/DOC family LIL_40044 PF12796 Ankyrin repeats (3 copies) LIL_40045 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_40051 PF04754 Putative transposase, YhgA-like LIL_50001 PF13614 AAA domain LIL_50010 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system LIL_50068 PF02481 DNA recombination-mediator protein A