locus-tag	class	description
LIL_10003	COG0592	DNA-directed DNA polymerase activity
LIL_10006	COG0187	DNA topoisomerase II activity
LIL_10020	COG0009	L-threonylcarbamoyladenylate synthase
LIL_10033	COG1874	Beta-galactosidase
LIL_10034	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
LIL_10035	COG0802	atpase or kinase
LIL_10037	COG0557	exoribonuclease II activity
LIL_10045	COG0840	transmembrane signaling receptor activity
LIL_10045	COG0840	transmembrane signaling receptor activity
LIL_10047	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIL_10048	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
LIL_10056	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LIL_10057	COG1045	serine acetyltransferase
LIL_10060	COG0534	Mate efflux family protein
LIL_10061	COG1301	dicarboxylic acid transport
LIL_10065	COG2205	protein histidine kinase activity
LIL_10068	COG1024	Enoyl-CoA hydratase
LIL_10073	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIL_10075	COG2226	methyltransferase
LIL_10097	COG1022	Amp-dependent synthetase and ligase
LIL_10101	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LIL_10119	COG0351	phosphomethylpyrimidine kinase
LIL_10119	COG0352	thiamine-phosphate diphosphorylase activity
LIL_10121	COG3852	Histidine kinase
LIL_10122	COG1162	GTPase activity
LIL_10137	COG1132	(ABC) transporter
LIL_10138	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
LIL_10143	COG1034	ATP synthesis coupled electron transport
LIL_10146	COG1595	DNA-templated transcription, initiation
LIL_10149	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
LIL_10150	COG3977	Valine--pyruvate aminotransferase
LIL_10155	COG1847	R3H domain protein
LIL_10157	COG0281	malic enzyme
LIL_10157	COG0280	phosphate acetyltransferase
LIL_10192	COG0564	pseudouridine synthase activity
LIL_10194	COG1028	Short-chain dehydrogenase reductase Sdr
LIL_10198	COG0483	inositol monophosphate 1-phosphatase activity
LIL_10209	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LIL_10211	COG1845	cytochrome c oxidase, subunit III
LIL_10215	COG4956	integral membrane protein (PIN domain superfamily)
LIL_10220	COG1192	Involved in chromosome partitioning
LIL_10223	COG0739	heme binding
LIL_10232	COG4591	ABC-type transport system involved in lipoprotein release permease component
LIL_10237	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIL_10238	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
LIL_10241	COG3361	conserved protein (COG2071)
LIL_10252	COG0517	IMP dehydrogenase activity
LIL_10254	COG1966	Carbon starvation protein
LIL_10266	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIL_10268	COG0402	S-adenosylhomocysteine deaminase activity
LIL_10269	COG3942	CHAP domain
LIL_10272	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LIL_10282	COG0142	geranyltranstransferase activity
LIL_10283	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
LIL_10287	COG0720	synthase
LIL_10289	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
LIL_10290	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
LIL_10294	COG0584	glycerophosphoryl diester phosphodiesterase
LIL_10300	COG1815	bacterial-type flagellum-dependent cell motility
LIL_10305	COG2832	Protein of unknown function (DUF454)
LIL_10318	COG0698	ribose 5-phosphate isomerase
LIL_10325	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LIL_10333	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LIL_10337	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LIL_10340	COG0542	response to heat
LIL_10345	COG1366	Belongs to the anti-sigma-factor antagonist family
LIL_10351	COG1131	(ABC) transporter
LIL_10353	COG1639	'signal transduction protein
LIL_10354	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LIL_10357	COG0180	Tryptophanyl-tRNA synthetase
LIL_10360	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
LIL_10361	COG2086	electron transfer activity
LIL_10363	COG1960	acyl-CoA dehydrogenase activity
LIL_10372	COG2326	polyphosphate kinase activity
LIL_10389	COG0488	(ABC) transporter
LIL_10391	COG1408	metallophosphoesterase
LIL_10396	COG0183	Belongs to the thiolase family
LIL_10423	COG0210	DNA helicase
LIL_10430	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
LIL_10433	COG0193	aminoacyl-tRNA hydrolase activity
LIL_10442	COG0347	Belongs to the P(II) protein family
LIL_10443	COG0004	ammonium transporteR
LIL_10448	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LIL_10449	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
LIL_10451	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LIL_10456	COG1215	transferase activity, transferring glycosyl groups
LIL_10466	COG0346	lactoylglutathione lyase activity
LIL_10470	COG4932	domain protein
LIL_10470	COG5492	domain, Protein
LIL_10471	COG4932	domain protein
LIL_10471	COG5492	domain, Protein
LIL_10481	COG0724	RNA recognition motif
LIL_10491	COG1639	'signal transduction protein
LIL_10496	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIL_10514	COG4085	toxin activity
LIL_10514	COG1525	nuclease
LIL_10514	COG0737	Belongs to the 5'-nucleotidase family
LIL_10521	COG4181	ATPase activity
LIL_10525	COG1678	Uncharacterized ACR, COG1678
LIL_10526	COG0673	inositol 2-dehydrogenase activity
LIL_10532	COG0768	penicillin binding
LIL_10535	COG1663	tetraacyldisaccharide 4'-kinase activity
LIL_10536	COG1132	(ABC) transporter
LIL_10537	COG4166	transmembrane transport
LIL_10538	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LIL_10542	COG2885	chlorophyll binding
LIL_10543	COG0488	(ABC) transporter
LIL_10548	COG1960	acyl-CoA dehydrogenase activity
LIL_10554	COG1573	uracil-dna glycosylase
LIL_10560	COG0596	Alpha beta hydrolase
LIL_10571	COG1999	signal sequence binding
LIL_10578	COG0460	homoserine dehydrogenase
LIL_10588	COG1132	(ABC) transporter
LIL_10589	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LIL_10589	COG0512	Glutamine amidotransferase of anthranilate synthase
LIL_10591	COG1960	acyl-CoA dehydrogenase activity
LIL_10594	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LIL_10594	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LIL_10596	COG0121	glutamine amidotransferase
LIL_10597	COG0004	ammonium transporteR
LIL_10600	COG1324	tolerance protein
LIL_10612	COG2030	dehydratase
LIL_10614	COG3119	arylsulfatase activity
LIL_10617	COG0783	Belongs to the Dps family
LIL_10623	COG0456	acetyltransferase
LIL_10626	COG0758	DNA mediated transformation
LIL_10628	COG3384	dioxygenase
LIL_10631	COG1582	Flagellar protein (FlbD)
LIL_10633	COG1360	Flagellar Motor Protein
LIL_10636	COG1366	Belongs to the anti-sigma-factor antagonist family
LIL_10639	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LIL_10641	COG0396	ATPase activity
LIL_10642	COG0719	Fe-S assembly protein
LIL_10643	COG2146	nitrite reductase [NAD(P)H] activity
LIL_10645	COG0822	iron-sulfur transferase activity
LIL_10651	COG4943	cyclic-guanylate-specific phosphodiesterase activity
LIL_10657	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LIL_10662	COG2226	methyltransferase
LIL_10667	COG0477	Major facilitator Superfamily
LIL_10668	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LIL_10677	COG1715	Restriction endonuclease
LIL_10679	COG2801	Transposase and inactivated derivatives
LIL_10682	COG4608	Belongs to the ABC transporter superfamily
LIL_10686	COG1116	anion transmembrane transporter activity
LIL_10691	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LIL_10694	COG1858	cytochrome C peroxidase
LIL_10697	COG0840	transmembrane signaling receptor activity
LIL_10712	COG1028	Short-chain dehydrogenase reductase Sdr
LIL_10725	COG4772	TonB-dependent receptor
LIL_10729	COG3153	acetyltransferase
LIL_10729	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LIL_10730	COG0277	FAD linked oxidase domain protein
LIL_10731	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
LIL_10739	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIL_10740	COG0513	Belongs to the DEAD box helicase family
LIL_10741	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LIL_10747	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LIL_10752	COG0196	riboflavin kinase activity
LIL_10757	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
LIL_10758	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LIL_10760	COG0739	heme binding
LIL_10765	COG0250	Participates in transcription elongation, termination and antitermination
LIL_10779	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LIL_10786	COG0612	Peptidase, M16
LIL_10787	COG0612	Peptidase, M16
LIL_10817	COG1024	Enoyl-CoA hydratase
LIL_10824	COG1024	Enoyl-CoA hydratase
LIL_10831	COG1024	Enoyl-CoA hydratase
LIL_10838	COG1024	Enoyl-CoA hydratase
LIL_10845	COG1024	Enoyl-CoA hydratase
LIL_10852	COG1024	Enoyl-CoA hydratase
LIL_10859	COG1024	Enoyl-CoA hydratase
LIL_10866	COG1024	Enoyl-CoA hydratase
LIL_10873	COG1024	Enoyl-CoA hydratase
LIL_10880	COG5002	protein histidine kinase activity
LIL_10881	COG0625	glutathione transferase activity
LIL_10888	COG1138	Cytochrome C-type biogenesis protein
LIL_10889	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
LIL_10921	COG1090	epimerase
LIL_10925	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LIL_10928	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
LIL_10939	COG0575	Belongs to the CDS family
LIL_10941	COG0750	zinc metalloprotease
LIL_10941	COG0750	zinc metalloprotease
LIL_10959	COG0243	molybdopterin cofactor binding
LIL_10966	COG4772	TonB-dependent receptor
LIL_10968	COG0386	Belongs to the glutathione peroxidase family
LIL_10970	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LIL_10977	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
LIL_10986	COG1024	Enoyl-CoA hydratase
LIL_10991	COG4942	peptidase
LIL_10991	COG1388	LysM domain
LIL_10995	COG0019	diaminopimelate decarboxylase activity
LIL_11026	COG0210	DNA helicase
LIL_11031	COG0640	Transcriptional regulator
LIL_11036	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LIL_11041	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
LIL_11044	COG0484	heat shock protein binding
LIL_11060	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LIL_11065	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
LIL_11071	COG2801	Transposase and inactivated derivatives
LIL_11075	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LIL_11079	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LIL_11080	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LIL_11083	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LIL_11083	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LIL_11089	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
LIL_11091	COG4208	sulfate ABC transporter
LIL_11097	COG0515	serine threonine protein kinase
LIL_11104	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LIL_11105	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LIL_11116	COG5001	Diguanylate cyclase
LIL_11119	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LIL_11121	COG0840	transmembrane signaling receptor activity
LIL_11126	COG1024	Enoyl-CoA hydratase
LIL_11135	COG0861	Integral membrane protein TerC family
LIL_11147	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LIL_11154	COG0326	Molecular chaperone. Has ATPase activity
LIL_11165	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
LIL_11166	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LIL_11168	COG2198	Histidine kinase
LIL_11168	COG0643	Histidine kinase
LIL_11170	COG2201	protein-glutamate methylesterase activity
LIL_11173	COG0077	Prephenate dehydratase
LIL_11173	COG1605	Chorismate mutase
LIL_11174	COG0287	Prephenate dehydrogenase
LIL_11177	COG0539	negative regulation of cytoplasmic translation
LIL_11191	COG1368	sulfuric ester hydrolase activity
LIL_11195	COG0577	efflux transmembrane transporter activity
LIL_11195	COG1136	(ABC) transporter
LIL_11201	COG0436	Aminotransferase
LIL_11202	COG0714	Associated with various cellular activities
LIL_11215	COG0174	glutamine synthetase
LIL_11230	COG0154	amidase activity
LIL_11231	COG0673	inositol 2-dehydrogenase activity
LIL_11232	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LIL_11235	COG0628	permease
LIL_11236	COG0697	spore germination
LIL_11237	COG0385	Bile acid
LIL_11241	COG0784	Response regulator, receiver
LIL_11242	COG4251	negative regulation of phosphorylation
LIL_11245	COG2843	Capsule synthesis protein
LIL_11248	COG4771	TonB-dependent receptor
LIL_11262	COG1741	Belongs to the pirin family
LIL_11266	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
LIL_11266	COG2755	lipolytic protein G-D-S-L family
LIL_11275	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LIL_11279	COG2409	Drug exporters of the RND superfamily
LIL_11279	COG1033	growth of symbiont in host cell
LIL_11287	COG0095	Lipoate-protein ligase
LIL_11296	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIL_11297	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LIL_11299	COG1028	Short-chain dehydrogenase reductase Sdr
LIL_11300	COG0631	protein serine/threonine phosphatase activity
LIL_11302	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LIL_11306	COG0537	adenosine 5'-monophosphoramidase activity
LIL_11307	COG1940	carbohydrate kinase activity
LIL_11308	COG0577	efflux transmembrane transporter activity
LIL_11308	COG1136	(ABC) transporter
LIL_11314	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
LIL_11316	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LIL_11325	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIL_11325	COG1752	Esterase of the alpha-beta hydrolase superfamily
LIL_11326	COG4251	negative regulation of phosphorylation
LIL_11327	COG0784	Response regulator, receiver
LIL_11328	COG0784	Response regulator, receiver
LIL_11328	COG4191	Histidine kinase
LIL_11345	COG0450	alkyl hydroperoxide reductase
LIL_11346	COG0719	Fe-S assembly protein
LIL_11356	COG0598	Magnesium transport protein CorA
LIL_11359	COG1309	transcriptional regulator
LIL_11365	COG0356	it plays a direct role in the translocation of protons across the membrane
LIL_11366	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LIL_11387	COG0768	penicillin binding
LIL_11388	COG0772	Belongs to the SEDS family
LIL_11393	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
LIL_11401	COG0439	Biotin carboxylase
LIL_11402	COG0511	ligase activity, forming carbon-carbon bonds
LIL_11403	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
LIL_11406	COG1959	2 iron, 2 sulfur cluster binding
LIL_11408	COG2070	2-Nitropropane dioxygenase
LIL_11419	COG2181	nitrate reductase activity
LIL_11419	COG0247	lactate metabolic process
LIL_11422	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
LIL_11428	COG1181	Belongs to the D-alanine--D-alanine ligase family
LIL_11432	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LIL_11433	COG0116	Belongs to the methyltransferase superfamily
LIL_11433	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LIL_11435	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIL_11436	COG0859	PFAM glycosyl transferase family 9
LIL_11437	COG0006	proline dipeptidase activity
LIL_11443	COG1473	amidohydrolase
LIL_11453	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
LIL_11456	COG1959	2 iron, 2 sulfur cluster binding
LIL_11456	COG1295	ribonuclease BN
LIL_11457	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LIL_11470	COG4774	siderophore transport
LIL_11472	COG1960	acyl-CoA dehydrogenase activity
LIL_11476	COG3958	Transketolase
LIL_11478	COG1063	alcohol dehydrogenase
LIL_11480	COG2030	dehydratase
LIL_11482	COG0339	signal peptide processing
LIL_11484	COG0625	glutathione transferase activity
LIL_11485	COG1028	Short-chain dehydrogenase reductase Sdr
LIL_11488	COG0688	phosphatidylethanolamine metabolic process
LIL_11490	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LIL_11490	COG1776	CheC inhibitor of MCP methylation
LIL_11492	COG1338	Plays a role in the flagellum-specific transport system
LIL_11493	COG1987	bacterial-type flagellum assembly
LIL_11495	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LIL_11497	COG1419	protein localization to endoplasmic reticulum
LIL_11498	COG0455	bacterial-type flagellum organization
LIL_11500	COG1191	sigma factor activity
LIL_11505	COG0194	GDP metabolic process
LIL_11512	COG1766	The M ring may be actively involved in energy transduction
LIL_11514	COG1317	bacterial-type flagellum organization
LIL_11520	COG2089	acid synthase
LIL_11527	COG0840	transmembrane signaling receptor activity
LIL_11529	COG0028	Belongs to the TPP enzyme family
LIL_11530	COG0440	acetolactate synthase activity
LIL_11534	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LIL_11535	COG1472	Belongs to the glycosyl hydrolase 3 family
LIL_11536	COG2755	lipolytic protein G-D-S-L family
LIL_11544	COG0724	RNA recognition motif
LIL_11548	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
LIL_11555	COG0488	(ABC) transporter
LIL_11560	COG4251	negative regulation of phosphorylation
LIL_11561	COG4565	transcriptional regulatory protein
LIL_11565	COG4251	negative regulation of phosphorylation
LIL_11565	COG3706	GGDEF domain
LIL_11565	COG5001	Diguanylate cyclase
LIL_11565	COG2203	Gaf domain
LIL_11566	COG2379	hydroxypyruvate reductase
LIL_11569	COG2801	Transposase and inactivated derivatives
LIL_11575	COG0708	Exodeoxyribonuclease III
LIL_11595	COG0492	ferredoxin-NADP+ reductase activity
LIL_11617	COG4555	ABC transporter
LIL_11619	COG2226	methyltransferase
LIL_11622	COG0024	Methionine aminopeptidase
LIL_11625	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LIL_11635	COG2208	phosphoserine phosphatase activity
LIL_11636	COG1366	Belongs to the anti-sigma-factor antagonist family
LIL_11638	COG0439	Biotin carboxylase
LIL_11644	COG3290	protein histidine kinase activity
LIL_11644	COG0840	transmembrane signaling receptor activity
LIL_11645	COG2198	Histidine kinase
LIL_11645	COG0643	Histidine kinase
LIL_11647	COG0745	RESPONSE REGULATOR receiver
LIL_11648	COG2201	protein-glutamate methylesterase activity
LIL_11649	COG2202	Pas domain
LIL_11649	COG2205	protein histidine kinase activity
LIL_11654	COG2096	Adenosyltransferase
LIL_11655	COG3104	oligopeptide transport
LIL_11656	COG0791	NLP P60 protein
LIL_11658	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LIL_11658	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
LIL_11659	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
LIL_11659	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LIL_11665	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LIL_11668	COG5000	phosphorelay sensor kinase activity
LIL_11669	COG2204	response regulator
LIL_11671	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LIL_11673	COG0515	serine threonine protein kinase
LIL_11673	COG2815	serine threonine protein kinase
LIL_11680	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LIL_11686	COG0606	chelatase, subunit chli
LIL_11688	COG0739	heme binding
LIL_11692	COG1459	type II secretion system
LIL_11704	COG1309	transcriptional regulator
LIL_11706	COG1063	alcohol dehydrogenase
LIL_11715	COG1193	negative regulation of DNA recombination
LIL_11716	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LIL_11726	COG0489	protein tyrosine kinase activity
LIL_11728	COG0163	prenyltransferase activity
LIL_11729	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
LIL_11732	COG0012	GTP binding
LIL_11734	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
LIL_11735	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIL_11736	COG0640	Transcriptional regulator
LIL_11737	COG1028	Short-chain dehydrogenase reductase Sdr
LIL_11738	COG1639	'signal transduction protein
LIL_11740	COG0497	DNA recombination
LIL_11741	COG0811	peptide transport
LIL_11742	COG0848	biopolymer transport protein
LIL_11743	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LIL_11746	COG1218	3'(2'),5'-bisphosphate nucleotidase
LIL_11749	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIL_11750	COG1022	Amp-dependent synthetase and ligase
LIL_11752	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LIL_11754	COG4221	oxidoreductase activity
LIL_11759	COG4335	DNA alkylation repair
LIL_11762	COG2133	pyrroloquinoline quinone binding
LIL_11770	COG1187	pseudouridine synthase activity
LIL_11778	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LIL_11779	COG1516	flagellar protein fliS
LIL_11784	COG0586	Pfam SNARE associated Golgi protein
LIL_11788	COG1104	cysteine desulfurase activity
LIL_11793	COG0666	response to abiotic stimulus
LIL_11794	COG0277	FAD linked oxidase domain protein
LIL_11795	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LIL_11808	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LIL_11810	COG0840	transmembrane signaling receptor activity
LIL_11814	COG4771	TonB-dependent receptor
LIL_11817	COG0726	polysaccharide deacetylase
LIL_11819	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LIL_11822	COG0358	DNA primase activity
LIL_11835	COG2239	Acts as a magnesium transporter
LIL_11836	COG1360	Flagellar Motor Protein
LIL_11840	COG0616	signal peptide processing
LIL_11842	COG2801	Transposase and inactivated derivatives
LIL_11843	COG0009	L-threonylcarbamoyladenylate synthase
LIL_11852	COG0446	pyridine nucleotide-disulphide oxidoreductase
LIL_11852	COG1902	pentaerythritol trinitrate reductase activity
LIL_11856	COG0210	DNA helicase
LIL_11859	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LIL_11861	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LIL_11862	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIL_11865	COG0312	modulator of DNA gyrase
LIL_11871	COG1022	Amp-dependent synthetase and ligase
LIL_11878	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIL_11882	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LIL_11884	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LIL_11890	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LIL_11899	COG0560	Phosphoserine phosphatase
LIL_11905	COG0156	8-amino-7-oxononanoate synthase activity
LIL_11907	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LIL_11907	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LIL_11911	COG0083	homoserine kinase activity
LIL_11913	COG2267	carboxylic ester hydrolase activity
LIL_11919	COG0616	signal peptide processing
LIL_11926	COG1234	tRNA 3'-trailer cleavage
LIL_11930	COG1131	(ABC) transporter
LIL_11931	COG0842	Transport permease protein
LIL_11933	COG0271	Belongs to the BolA IbaG family
LIL_11934	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LIL_11937	COG0405	Gamma-glutamyltransferase
LIL_11938	COG0542	response to heat
LIL_11941	COG1595	DNA-templated transcription, initiation
LIL_11943	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LIL_11944	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LIL_11948	COG0444	Belongs to the ABC transporter superfamily
LIL_11951	COG0463	Glycosyl transferase, family 2
LIL_11959	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LIL_11962	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LIL_11966	COG0330	HflC and HflK could
LIL_11967	COG0330	HflC and HflK could
LIL_11970	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LIL_11977	COG2813	Specifically methylates the guanine in position
LIL_11977	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LIL_11980	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LIL_11981	COG1127	ABC transporter
LIL_11986	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LIL_11988	COG0772	Belongs to the SEDS family
LIL_12008	COG3876	Protein conserved in bacteria
LIL_12018	COG2205	protein histidine kinase activity
LIL_12019	COG0745	RESPONSE REGULATOR receiver
LIL_12020	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LIL_12021	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIL_12021	COG0022	dehydrogenase e1 component
LIL_12022	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIL_12023	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LIL_12027	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LIL_12029	COG1649	PFAM Uncharacterised BCR, COG1649
LIL_12029	COG0726	polysaccharide deacetylase
LIL_12035	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
LIL_12036	COG0352	thiamine-phosphate diphosphorylase activity
LIL_12038	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LIL_12042	COG2200	EAL domain
LIL_12043	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
LIL_12050	COG1028	Short-chain dehydrogenase reductase Sdr
LIL_12053	COG0406	alpha-ribazole phosphatase activity
LIL_12053	COG0328	RNA-DNA hybrid ribonuclease activity
LIL_12066	COG0519	Catalyzes the synthesis of GMP from XMP
LIL_12067	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIL_12096	COG1960	acyl-CoA dehydrogenase activity
LIL_12098	COG3118	belongs to the thioredoxin family
LIL_12101	COG0805	protein transport
LIL_12104	COG0724	RNA recognition motif
LIL_12108	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LIL_12111	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LIL_12117	COG2267	carboxylic ester hydrolase activity
LIL_12121	COG1053	succinate dehydrogenase
LIL_12137	COG0733	neurotransmitter:sodium symporter activity
LIL_12138	COG1199	ATP-dependent helicase activity
LIL_12147	COG3458	cephalosporin-C deacetylase activity
LIL_12149	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LIL_12151	COG4191	Histidine kinase
LIL_12154	COG0735	belongs to the Fur family
LIL_12156	COG4786	Flagellar basal body rod
LIL_12190	COG2205	protein histidine kinase activity
LIL_12193	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LIL_12200	COG0728	peptidoglycan biosynthetic process
LIL_12209	COG1639	'signal transduction protein
LIL_12210	COG1119	ATPase activity
LIL_12211	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LIL_12216	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LIL_12218	COG4251	negative regulation of phosphorylation
LIL_12219	COG0745	RESPONSE REGULATOR receiver
LIL_12220	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LIL_12229	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIL_12229	COG4191	Histidine kinase
LIL_12237	COG1381	Involved in DNA repair and RecF pathway recombination
LIL_12239	COG1480	7TM receptor with intracellular HD hydrolase
LIL_12240	COG1702	phosphate starvation-inducible protein PhoH
LIL_12243	COG0305	Participates in initiation and elongation during chromosome replication
LIL_12246	COG0629	single-stranded DNA binding
LIL_12252	COG0471	metal ion transport
LIL_12257	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
LIL_12258	COG1088	dTDP-glucose 4,6-dehydratase activity
LIL_12262	COG0463	Glycosyl transferase, family 2
LIL_12262	COG1216	Glycosyl transferase, family 2
LIL_12266	COG1442	glycosyl transferase family 8
LIL_12271	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LIL_12276	COG0438	transferase activity, transferring glycosyl groups
LIL_12279	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LIL_12281	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
LIL_12283	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
LIL_12284	COG1028	Short-chain dehydrogenase reductase Sdr
LIL_12287	COG0110	maltose O-acetyltransferase activity
LIL_12288	COG1028	Short-chain dehydrogenase reductase Sdr
LIL_12289	COG3836	Belongs to the HpcH HpaI aldolase family
LIL_12290	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LIL_12290	COG0517	IMP dehydrogenase activity
LIL_12291	COG2877	3-deoxy-8-phosphooctulonate synthase activity
LIL_12293	COG2226	methyltransferase
LIL_12295	COG2089	acid synthase
LIL_12296	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LIL_12296	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIL_12297	COG3980	spore coat polysaccharide biosynthesis protein
LIL_12298	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LIL_12299	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LIL_12303	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LIL_12305	COG1132	(ABC) transporter
LIL_12310	COG1028	Short-chain dehydrogenase reductase Sdr
LIL_12313	COG2813	Specifically methylates the guanine in position
LIL_12314	COG0494	nUDIX hydrolase
LIL_12317	COG3958	Transketolase
LIL_12318	COG3959	Transketolase, thiamine diphosphate binding domain
LIL_12322	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIL_12323	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
LIL_12323	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LIL_12324	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LIL_12325	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIL_12326	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LIL_12328	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIL_12336	COG0071	Belongs to the small heat shock protein (HSP20) family
LIL_12341	COG1999	signal sequence binding
LIL_12348	COG0475	glutathione-regulated potassium exporter activity
LIL_12353	COG1073	alpha beta
LIL_12360	COG1830	Aldolase
LIL_12363	COG5002	protein histidine kinase activity
LIL_12378	COG0793	Belongs to the peptidase S41A family
LIL_12379	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LIL_12396	COG0564	pseudouridine synthase activity
LIL_12398	COG1304	FMN binding
LIL_12402	COG3706	GGDEF domain
LIL_12402	COG0745	RESPONSE REGULATOR receiver
LIL_12403	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIL_12404	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LIL_12417	COG0366	Alpha amylase catalytic
LIL_12419	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LIL_12420	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LIL_12425	COG2003	Belongs to the UPF0758 family
LIL_12432	COG0793	Belongs to the peptidase S41A family
LIL_12446	COG0596	Alpha beta hydrolase
LIL_12457	COG0850	regulation of cytokinetic process
LIL_12463	COG2226	methyltransferase
LIL_12470	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LIL_12475	COG1396	sequence-specific DNA binding
LIL_12480	COG0739	heme binding
LIL_12484	COG1028	Short-chain dehydrogenase reductase Sdr
LIL_12489	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
LIL_12490	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
LIL_12491	COG3345	alpha-galactosidase
LIL_12496	COG0123	including yeast histone deacetylase and acetoin utilization protein
LIL_12497	COG0469	pyruvate kinase activity
LIL_12498	COG5001	Diguanylate cyclase
LIL_12498	COG3706	GGDEF domain
LIL_12498	COG2203	Gaf domain
LIL_12498	COG4251	negative regulation of phosphorylation
LIL_12499	COG3706	GGDEF domain
LIL_12501	COG0745	RESPONSE REGULATOR receiver
LIL_12501	COG3706	GGDEF domain
LIL_12502	COG3706	GGDEF domain
LIL_12502	COG0745	RESPONSE REGULATOR receiver
LIL_12505	COG3706	GGDEF domain
LIL_12506	COG0038	chloride channel
LIL_12512	COG3011	Protein conserved in bacteria
LIL_12513	COG1501	Belongs to the glycosyl hydrolase 31 family
LIL_12520	COG4565	transcriptional regulatory protein
LIL_12523	COG0671	phosphoesterase, PA-phosphatase related
LIL_12524	COG0204	Acyl-transferase
LIL_12525	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
LIL_12525	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
LIL_12525	COG1703	isobutyryl-CoA mutase activity
LIL_12527	COG0596	Alpha beta hydrolase
LIL_12530	COG1988	membrane-bound metal-dependent
LIL_12535	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
LIL_12537	COG1215	transferase activity, transferring glycosyl groups
LIL_12542	COG1858	cytochrome C peroxidase
LIL_12548	COG2385	sporulation resulting in formation of a cellular spore
LIL_12549	COG1136	(ABC) transporter
LIL_12556	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LIL_12556	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LIL_12564	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
LIL_12564	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LIL_12573	COG1704	LemA family
LIL_12574	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
LIL_12584	COG4884	unkown
LIL_12584	COG3831	ATPase activity
LIL_12594	COG0436	Aminotransferase
LIL_12595	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIL_12607	COG0463	Glycosyl transferase, family 2
LIL_12610	COG5492	domain, Protein
LIL_12610	COG4932	domain protein
LIL_12615	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LIL_12619	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LIL_12631	COG1366	Belongs to the anti-sigma-factor antagonist family
LIL_12632	COG1652	LysM domain
LIL_12633	COG3547	Transposase (IS116 IS110 IS902 family)
LIL_12643	COG0745	RESPONSE REGULATOR receiver
LIL_12644	COG2205	protein histidine kinase activity
LIL_12648	COG2815	serine threonine protein kinase
LIL_12648	COG0515	serine threonine protein kinase
LIL_12653	COG1262	PFAM Formylglycine-generating sulfatase enzyme
LIL_12660	COG0183	Belongs to the thiolase family
LIL_12666	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LIL_12669	COG2267	carboxylic ester hydrolase activity
LIL_12675	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LIL_12684	COG1408	metallophosphoesterase
LIL_12686	COG0656	L-ascorbic acid biosynthetic process
LIL_12687	COG0488	(ABC) transporter
LIL_12695	COG1203	CRISPR-associated helicase, Cas3
LIL_12697	COG1857	crispr-associated protein
LIL_12711	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIL_12711	COG4191	Histidine kinase
LIL_12717	COG0142	geranyltranstransferase activity
LIL_12720	COG3959	Transketolase, thiamine diphosphate binding domain
LIL_12737	COG0811	peptide transport
LIL_12739	COG0848	biopolymer transport protein
LIL_12743	COG4974	Belongs to the 'phage' integrase family
LIL_12744	COG2815	serine threonine protein kinase
LIL_12744	COG0515	serine threonine protein kinase
LIL_12745	COG2234	aminopeptidase activity
LIL_12749	COG1487	ribonuclease activity
LIL_12763	COG3831	ATPase activity
LIL_12763	COG4884	unkown
LIL_12764	COG3831	ATPase activity
LIL_12764	COG4884	unkown
LIL_12772	COG0842	Transport permease protein
LIL_12773	COG1131	(ABC) transporter
LIL_12774	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LIL_12775	COG1074	ATP-dependent DNA helicase activity
LIL_12776	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
LIL_12777	COG0514	ATP-dependent DNA helicase (RecQ)
LIL_12781	COG1331	Highly conserved protein containing a thioredoxin domain
LIL_12785	COG0705	Rhomboid family
LIL_12791	COG0612	Peptidase, M16
LIL_12797	COG0195	Participates in both transcription termination and antitermination
LIL_12800	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LIL_12800	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LIL_12806	COG2267	carboxylic ester hydrolase activity
LIL_12807	COG2814	Major facilitator Superfamily
LIL_12815	COG1024	Enoyl-CoA hydratase
LIL_12817	COG0123	including yeast histone deacetylase and acetoin utilization protein
LIL_12828	COG1846	Transcriptional regulator
LIL_12831	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIL_12833	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIL_12841	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIL_12847	COG1595	DNA-templated transcription, initiation
LIL_12852	COG1639	'signal transduction protein
LIL_12854	COG0028	Belongs to the TPP enzyme family
LIL_12856	COG1366	Belongs to the anti-sigma-factor antagonist family
LIL_12884	COG0183	Belongs to the thiolase family
LIL_12892	COG0742	ribosomal rna small subunit methyltransferase
LIL_12897	COG2197	response regulator
LIL_12898	COG4585	Histidine kinase
LIL_12903	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIL_12904	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIL_12910	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LIL_12918	COG0741	lytic transglycosylase activity
LIL_12922	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LIL_12928	COG2314	TM2 domain
LIL_12947	COG0201	protein transport
LIL_12969	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LIL_12978	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
LIL_12988	COG0741	lytic transglycosylase activity
LIL_12988	COG1196	nuclear chromosome segregation
LIL_12988	COG0739	heme binding
LIL_12993	COG3831	ATPase activity
LIL_12993	COG4884	unkown
LIL_12994	COG0714	Associated with various cellular activities
LIL_12995	COG2425	protein containing a von Willebrand factor type A (vWA) domain
LIL_12996	COG3552	Protein containing von Willebrand factor type A (VWA) domain
LIL_13000	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIL_13001	COG0527	aspartate kinase activity
LIL_13010	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
LIL_13015	COG0840	transmembrane signaling receptor activity
LIL_13016	COG0840	transmembrane signaling receptor activity
LIL_13018	COG0731	radical SAM domain protein
LIL_13023	COG1858	cytochrome C peroxidase
LIL_13024	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIL_13032	COG1482	cell wall glycoprotein biosynthetic process
LIL_13035	COG1366	Belongs to the anti-sigma-factor antagonist family
LIL_13041	COG0539	negative regulation of cytoplasmic translation
LIL_13043	COG1639	'signal transduction protein
LIL_13044	COG0463	Glycosyl transferase, family 2
LIL_13051	COG0285	dihydrofolate synthase activity
LIL_13064	COG0514	ATP-dependent DNA helicase (RecQ)
LIL_13074	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LIL_13081	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LIL_13082	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIL_13084	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LIL_13088	COG2217	Heavy metal translocating P-type atpase
LIL_13090	COG1937	Protein conserved in bacteria
LIL_13103	COG0288	reversible hydration of carbon dioxide
LIL_13107	COG0586	Pfam SNARE associated Golgi protein
LIL_13112	COG4692	amylo-alpha-1,6-glucosidase activity
LIL_13115	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
LIL_13119	COG0666	response to abiotic stimulus
LIL_13122	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LIL_13129	COG3876	Protein conserved in bacteria
LIL_13146	COG0531	amino acid
LIL_13149	COG1846	Transcriptional regulator
LIL_13151	COG2259	Doxx family
LIL_13154	COG2081	HI0933 family
LIL_13162	COG1040	competence protein
LIL_13164	COG3239	Fatty acid desaturase
LIL_13173	COG0519	Catalyzes the synthesis of GMP from XMP
LIL_13181	COG1881	PFAM PEBP family protein
LIL_13192	COG4585	Histidine kinase
LIL_13193	COG2197	response regulator
LIL_13201	COG1090	epimerase
LIL_13207	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
LIL_13211	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LIL_13213	COG4191	Histidine kinase
LIL_13214	COG5002	protein histidine kinase activity
LIL_13217	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LIL_13220	COG4943	cyclic-guanylate-specific phosphodiesterase activity
LIL_13222	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
LIL_13229	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
LIL_13232	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIL_13235	COG1960	acyl-CoA dehydrogenase activity
LIL_13242	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LIL_13243	COG1253	flavin adenine dinucleotide binding
LIL_13250	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LIL_13254	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LIL_13260	COG1605	Chorismate mutase
LIL_13260	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
LIL_13262	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LIL_13262	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LIL_13263	COG1484	DNA-dependent DNA replication
LIL_13266	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
LIL_13267	COG0534	Mate efflux family protein
LIL_13271	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LIL_13273	COG0667	Aldo Keto reductase
LIL_13277	COG0494	nUDIX hydrolase
LIL_13279	COG0584	glycerophosphoryl diester phosphodiesterase
LIL_13284	COG3263	regulation of cellular component size
LIL_13286	COG0456	acetyltransferase
LIL_13289	COG0784	Response regulator, receiver
LIL_13289	COG2198	Histidine kinase
LIL_13289	COG2205	protein histidine kinase activity
LIL_13304	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIL_13305	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LIL_13317	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LIL_13319	COG1560	Kdo2-lipid A biosynthetic process
LIL_13321	COG2271	Major facilitator Superfamily
LIL_13327	COG0513	Belongs to the DEAD box helicase family
LIL_13328	COG1262	PFAM Formylglycine-generating sulfatase enzyme
LIL_13329	COG4221	oxidoreductase activity
LIL_13335	COG3956	TIGRFAM MazG family protein
LIL_13337	COG0745	RESPONSE REGULATOR receiver
LIL_13339	COG0538	isocitrate dehydrogenase activity
LIL_13347	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LIL_13359	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LIL_13360	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
LIL_13361	COG0494	nUDIX hydrolase
LIL_13368	COG0745	RESPONSE REGULATOR receiver
LIL_13369	COG5002	protein histidine kinase activity
LIL_13379	COG2030	dehydratase
LIL_13380	COG1960	acyl-CoA dehydrogenase activity
LIL_13382	COG4942	peptidase
LIL_13384	COG1595	DNA-templated transcription, initiation
LIL_13386	COG2949	membrane
LIL_13398	COG1024	Enoyl-CoA hydratase
LIL_13398	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIL_13399	COG0183	Belongs to the thiolase family
LIL_13411	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LIL_13430	COG0473	3-isopropylmalate dehydrogenase activity
LIL_13432	COG2197	response regulator
LIL_13433	COG5002	protein histidine kinase activity
LIL_13433	COG5001	Diguanylate cyclase
LIL_13433	COG3447	MASE1 domain protein
LIL_13438	COG0436	Aminotransferase
LIL_13442	COG1360	Flagellar Motor Protein
LIL_13451	COG0187	DNA topoisomerase II activity
LIL_13456	COG1231	oxidoreductase activity
LIL_13462	COG2304	oxidoreductase activity
LIL_13472	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LIL_13473	COG1648	precorrin-2 dehydrogenase activity
LIL_13473	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LIL_13474	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LIL_13474	COG1648	precorrin-2 dehydrogenase activity
LIL_13476	COG0175	sulfate reduction
LIL_13477	COG0175	sulfate reduction
LIL_13478	COG2801	Transposase and inactivated derivatives
LIL_13486	COG4174	ABC transporter (Permease)
LIL_13487	COG4239	(ABC) transporter, permease
LIL_13488	COG0444	Belongs to the ABC transporter superfamily
LIL_13489	COG4608	Belongs to the ABC transporter superfamily
LIL_13493	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LIL_13498	COG0840	transmembrane signaling receptor activity
LIL_13498	COG3290	protein histidine kinase activity
LIL_13504	COG0840	transmembrane signaling receptor activity
LIL_13505	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LIL_13513	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIL_13516	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LIL_13522	COG2111	Na H antiporter
LIL_13522	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LIL_13526	COG0649	NAD binding
LIL_13537	COG0167	dihydroorotate dehydrogenase activity
LIL_13545	COG1846	Transcriptional regulator
LIL_13546	COG0386	Belongs to the glutathione peroxidase family
LIL_13557	COG0741	lytic transglycosylase activity
LIL_13557	COG1196	nuclear chromosome segregation
LIL_13557	COG0739	heme binding
LIL_13566	COG2363	Small membrane protein
LIL_13568	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
LIL_13573	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LIL_13577	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LIL_13581	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LIL_13584	COG0084	hydrolase, TatD family'
LIL_13591	COG1475	DNA binding
LIL_13592	COG1192	Involved in chromosome partitioning
LIL_13594	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIL_13596	COG2801	Transposase and inactivated derivatives
LIL_13599	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LIL_20002	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
LIL_20004	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
LIL_20005	COG0561	phosphatase activity
LIL_20008	COG0181	hydroxymethylbilane synthase activity
LIL_20009	COG0113	porphobilinogen synthase activity
LIL_20011	COG5002	protein histidine kinase activity
LIL_20012	COG0745	RESPONSE REGULATOR receiver
LIL_20013	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LIL_20014	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LIL_20020	COG1192	Involved in chromosome partitioning
LIL_20021	COG1475	DNA binding
LIL_20026	COG2801	Transposase and inactivated derivatives
LIL_20032	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LIL_20033	COG1252	NADH dehydrogenase
LIL_20037	COG4221	oxidoreductase activity
LIL_20045	COG0714	Associated with various cellular activities
LIL_20052	COG0326	Molecular chaperone. Has ATPase activity
LIL_20065	COG1703	isobutyryl-CoA mutase activity
LIL_20081	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
LIL_20085	COG1022	Amp-dependent synthetase and ligase
LIL_20086	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
LIL_20093	COG0640	Transcriptional regulator
LIL_20096	COG0646	methionine synthase
LIL_20096	COG1410	methionine synthase
LIL_20100	COG2208	phosphoserine phosphatase activity
LIL_20100	COG2770	Histidine kinase
LIL_20102	COG1028	Short-chain dehydrogenase reductase Sdr
LIL_20104	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LIL_20108	COG4221	oxidoreductase activity
LIL_20117	COG4943	cyclic-guanylate-specific phosphodiesterase activity
LIL_20130	COG0406	alpha-ribazole phosphatase activity
LIL_20154	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIL_20159	COG5398	heme oxygenase
LIL_20162	COG4771	TonB-dependent receptor
LIL_20169	COG1067	ATP-dependent peptidase activity
LIL_20170	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LIL_20179	COG1694	Mazg nucleotide pyrophosphohydrolase
LIL_20180	COG0848	biopolymer transport protein
LIL_20186	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
LIL_20194	COG2200	EAL domain
LIL_20195	COG3706	GGDEF domain
LIL_20196	COG3706	GGDEF domain
LIL_20197	COG0784	Response regulator, receiver
LIL_20197	COG5002	protein histidine kinase activity
LIL_20201	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIL_20209	COG0427	acetyl-CoA hydrolase
LIL_20217	COG0385	Bile acid
LIL_20218	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LIL_20222	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
LIL_20223	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
LIL_20223	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
LIL_20224	COG1703	isobutyryl-CoA mutase activity
LIL_20230	COG0811	peptide transport
LIL_20234	COG0069	glutamate synthase activity
LIL_20238	COG3852	Histidine kinase
LIL_20239	COG1028	Short-chain dehydrogenase reductase Sdr
LIL_20261	COG5002	protein histidine kinase activity
LIL_20262	COG0741	lytic transglycosylase activity
LIL_20263	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
LIL_20264	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
LIL_20264	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
LIL_20265	COG1703	isobutyryl-CoA mutase activity
LIL_20271	COG0811	peptide transport
LIL_20275	COG0069	glutamate synthase activity
LIL_20279	COG3852	Histidine kinase
LIL_20280	COG1028	Short-chain dehydrogenase reductase Sdr
LIL_20302	COG5002	protein histidine kinase activity
LIL_20303	COG0741	lytic transglycosylase activity
LIL_20306	COG2885	chlorophyll binding
LIL_20310	COG0745	RESPONSE REGULATOR receiver
LIL_20312	COG2154	pterin-4-alpha-carbinolamine dehydratase
LIL_20329	COG1696	Membrane protein involved in D-alanine export
LIL_20335	COG1192	Involved in chromosome partitioning
LIL_20336	COG1475	DNA binding
LIL_30001	COG2894	cell division
LIL_30052	COG2200	EAL domain
LIL_30062	COG2801	Transposase and inactivated derivatives
LIL_30064	COG5464	transposase or invertase
LIL_40002	COG1475	DNA binding
LIL_40030	COG2361	Protein of unknown function DUF86
LIL_40044	COG0666	response to abiotic stimulus
LIL_40044	COG3177	Filamentation induced by cAMP protein fic
LIL_40045	COG1045	serine acetyltransferase
LIL_50001	COG1192	Involved in chromosome partitioning
LIL_50010	COG1598	PFAM Uncharacterised protein family UPF0150
LIL_50068	COG0758	DNA mediated transformation