LIL_10001 PF00308 Bacterial dnaA protein LIL_10001 PF08299 Bacterial dnaA protein helix-turn-helix LIL_10001 PF11638 DnaA N-terminal domain LIL_10003 PF00712 DNA polymerase III beta subunit, N-terminal domain LIL_10003 PF02767 DNA polymerase III beta subunit, central domain LIL_10003 PF02768 DNA polymerase III beta subunit, C-terminal domain LIL_10004 PF02463 RecF/RecN/SMC N terminal domain LIL_10005 PF05258 LIL_10005 LIL_10006 PF00204 DNA gyrase B LIL_10006 PF00986 DNA gyrase B subunit, carboxyl terminus LIL_10006 PF01751 Toprim domain LIL_10006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10007 PF00521 DNA gyrase/topoisomerase IV, subunit A LIL_10007 PF03989 DNA gyrase C-terminal domain, beta-propeller LIL_10008 PF01207 Dihydrouridine synthase (Dus) LIL_10009 PF10675 LIL_10009 LIL_10014 PF06144 DNA polymerase III, delta subunit LIL_10016 PF02545 Maf-like protein LIL_10019 PF13561 Enoyl-(Acyl carrier protein) reductase LIL_10020 PF01300 Telomere recombination LIL_10021 PF01839 FG-GAP repeat LIL_10021 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella LIL_10023 PF03960 ArsC family LIL_10024 PF01706 FliG C-terminal domain LIL_10024 PF14841 FliG middle domain LIL_10024 PF14842 FliG N-terminal domain LIL_10025 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_10025 PF07695 LIL_10025 LIL_10029 PF06181 LIL_10029 LIL_10031 PF00459 Inositol monophosphatase family LIL_10033 PF02449 Beta-galactosidase LIL_10033 PF08532 Beta-galactosidase trimerisation domain LIL_10033 PF08533 Beta-galactosidase C-terminal domain LIL_10034 PF01430 Hsp33 protein LIL_10035 PF02367 Uncharacterised P-loop hydrolase UPF0079 LIL_10036 PF00814 Glycoprotease family LIL_10037 PF00773 RNB domain LIL_10037 PF08206 Ribonuclease B OB domain LIL_10039 PF00732 GMC oxidoreductase LIL_10039 PF05199 GMC oxidoreductase LIL_10040 PF13181 Tetratricopeptide repeat LIL_10040 PF13432 Tetratricopeptide repeat LIL_10041 PF01487 Type I 3-dehydroquinase LIL_10042 PF00571 CBS domain LIL_10042 PF01380 SIS domain LIL_10043 PF02357 Transcription termination factor nusG LIL_10045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_10045 PF08447 PAS fold LIL_10046 PF13398 Peptidase M50B-like LIL_10047 PF16363 LIL_10047 LIL_10048 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LIL_10048 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LIL_10049 PF01569 PAP2 superfamily LIL_10050 PF03129 Anticodon binding domain LIL_10050 PF13393 Histidyl-tRNA synthetase LIL_10051 PF07614 LIL_10051 LIL_10052 PF00691 OmpA family LIL_10052 PF07676 WD40-like Beta Propeller Repeat LIL_10053 PF00809 Pterin binding enzyme LIL_10055 PF00515 Tetratricopeptide repeat LIL_10055 PF13181 Tetratricopeptide repeat LIL_10056 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel LIL_10056 PF05036 Sporulation related domain LIL_10057 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_10060 PF01554 MatE LIL_10061 PF00375 Sodium:dicarboxylate symporter family LIL_10062 PF00672 HAMP domain LIL_10062 PF07228 Stage II sporulation protein E (SpoIIE) LIL_10065 PF00672 HAMP domain LIL_10065 PF07228 Stage II sporulation protein E (SpoIIE) LIL_10065 PF14559 Tetratricopeptide repeat LIL_10066 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) LIL_10068 PF00378 Enoyl-CoA hydratase/isomerase family LIL_10069 PF01833 IPT/TIG domain LIL_10071 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIL_10073 PF13450 NAD(P)-binding Rossmann-like domain LIL_10074 PF13419 Haloacid dehalogenase-like hydrolase LIL_10075 PF13489 Methyltransferase domain LIL_10076 PF01678 Diaminopimelate epimerase LIL_10077 PF01553 Acyltransferase LIL_10079 PF01548 LIL_10079 LIL_10080 PF02371 LIL_10080 LIL_10089 PF05958 tRNA (Uracil-5-)-methyltransferase LIL_10093 PF13646 HEAT repeats LIL_10095 PF00753 Metallo-beta-lactamase superfamily LIL_10097 PF00501 AMP-binding enzyme LIL_10099 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LIL_10100 PF13563 2'-5' RNA ligase superfamily LIL_10101 PF00425 chorismate binding enzyme LIL_10101 PF01063 Aminotransferase class IV LIL_10102 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10102 PF05231 LIL_10102 LIL_10102 PF07568 LIL_10102 LIL_10104 PF01053 Cys/Met metabolism PLP-dependent enzyme LIL_10105 PF00472 RF-1 domain LIL_10105 PF03462 PCRF domain LIL_10110 PF01694 Rhomboid family LIL_10113 PF00475 Imidazoleglycerol-phosphate dehydratase LIL_10114 PF00117 Glutamine amidotransferase class-I LIL_10115 PF00977 Histidine biosynthesis protein LIL_10116 PF07884 Vitamin K epoxide reductase family LIL_10116 PF13462 Thioredoxin LIL_10118 PF05960 Bacterial protein of unknown function (DUF885) LIL_10119 PF08543 Phosphomethylpyrimidine kinase LIL_10120 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LIL_10121 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10122 PF03193 Protein of unknown function, DUF258 LIL_10124 PF04773 FecR protein LIL_10126 PF13181 Tetratricopeptide repeat LIL_10126 PF14559 Tetratricopeptide repeat LIL_10127 PF02390 Putative methyltransferase LIL_10128 PF12706 Beta-lactamase superfamily domain LIL_10129 PF07238 PilZ domain LIL_10131 PF01926 50S ribosome-binding GTPase LIL_10132 PF01171 PP-loop family LIL_10133 PF00158 Sigma-54 interaction domain LIL_10133 PF01590 GAF domain LIL_10133 PF02954 Bacterial regulatory protein, Fis family LIL_10133 PF13185 GAF domain LIL_10135 PF11294 LIL_10135 LIL_10136 PF00856 SET domain LIL_10137 PF00005 ABC transporter LIL_10137 PF00664 ABC transporter transmembrane region LIL_10138 PF01842 ACT domain LIL_10142 PF01264 Chorismate synthase LIL_10143 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LIL_10143 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LIL_10143 PF13510 2Fe-2S iron-sulfur cluster binding domain LIL_10144 PF12838 4Fe-4S dicluster domain LIL_10145 PF04255 Protein of unknown function (DUF433) LIL_10146 PF04542 Sigma-70 region 2 LIL_10146 PF08281 Sigma-70, region 4 LIL_10149 PF01323 DSBA-like thioredoxin domain LIL_10150 PF00155 Aminotransferase class I and II LIL_10152 PF00468 Ribosomal protein L34 LIL_10153 PF01809 LIL_10153 LIL_10154 PF02096 60Kd inner membrane protein LIL_10155 PF01424 R3H domain LIL_10155 PF13083 KH domain LIL_10155 PF14804 Jag N-terminus LIL_10156 PF01926 50S ribosome-binding GTPase LIL_10156 PF10396 GTP-binding protein TrmE N-terminus LIL_10156 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE LIL_10157 PF00390 Malic enzyme, N-terminal domain LIL_10157 PF03949 Malic enzyme, NAD binding domain LIL_10159 PF00206 Lyase LIL_10159 PF10415 Fumarase C C-terminus LIL_10163 PF07352 Bacteriophage Mu Gam like protein LIL_10168 PF12844 Helix-turn-helix domain LIL_10180 PF05489 Phage Tail Protein X LIL_10184 PF04865 LIL_10184 LIL_10191 PF00691 OmpA family LIL_10192 PF00849 RNA pseudouridylate synthase LIL_10193 PF00795 Carbon-nitrogen hydrolase LIL_10194 PF00106 short chain dehydrogenase LIL_10197 PF06803 LIL_10197 LIL_10198 PF00459 Inositol monophosphatase family LIL_10199 PF00534 Glycosyl transferases group 1 LIL_10200 PF00534 Glycosyl transferases group 1 LIL_10201 PF00534 Glycosyl transferases group 1 LIL_10203 PF16363 LIL_10203 LIL_10205 PF01040 UbiA prenyltransferase family LIL_10206 PF02628 LIL_10206 LIL_10208 PF02630 SCO1/SenC LIL_10209 PF00034 Cytochrome c LIL_10209 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LIL_10209 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LIL_10210 PF00115 Cytochrome C and Quinol oxidase polypeptide I LIL_10211 PF00510 Cytochrome c oxidase subunit III LIL_10214 PF02559 CarD-like/TRCF domain LIL_10215 PF01938 TRAM domain LIL_10216 PF01293 Phosphoenolpyruvate carboxykinase LIL_10218 PF07661 LIL_10218 LIL_10220 PF13614 AAA domain LIL_10221 PF02637 GatB domain LIL_10221 PF02934 GatB/GatE catalytic domain LIL_10222 PF01336 OB-fold nucleic acid binding domain LIL_10222 PF02811 PHP domain LIL_10222 PF07733 Bacterial DNA polymerase III alpha subunit LIL_10222 PF14579 Helix-hairpin-helix motif LIL_10223 PF01551 Peptidase family M23 LIL_10226 PF01609 Transposase DDE domain LIL_10226 PF05598 LIL_10226 LIL_10227 PF12770 LIL_10227 LIL_10232 PF02687 LIL_10232 LIL_10232 PF12704 MacB-like periplasmic core domain LIL_10233 PF00005 ABC transporter LIL_10237 PF00027 Cyclic nucleotide-binding domain LIL_10238 PF00730 HhH-GPD superfamily base excision DNA repair protein LIL_10239 PF06739 LIL_10239 LIL_10241 PF09844 LIL_10241 LIL_10245 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_10245 PF07695 LIL_10245 LIL_10247 PF12796 Ankyrin repeats (3 copies) LIL_10248 PF05958 tRNA (Uracil-5-)-methyltransferase LIL_10249 PF13476 AAA domain LIL_10250 PF12850 Calcineurin-like phosphoesterase superfamily domain LIL_10251 PF00107 Zinc-binding dehydrogenase LIL_10251 PF08240 Alcohol dehydrogenase GroES-like domain LIL_10252 PF00571 CBS domain LIL_10253 PF00226 DnaJ domain LIL_10254 PF02554 LIL_10254 LIL_10254 PF13722 LIL_10254 LIL_10255 PF00293 NUDIX domain LIL_10255 PF14803 Nudix N-terminal LIL_10256 PF00691 OmpA family LIL_10257 PF05742 LIL_10257 LIL_10262 PF01548 LIL_10262 LIL_10263 PF02371 LIL_10263 LIL_10265 PF05175 Methyltransferase small domain LIL_10266 PF00027 Cyclic nucleotide-binding domain LIL_10267 PF00027 Cyclic nucleotide-binding domain LIL_10267 PF13174 Tetratricopeptide repeat LIL_10268 PF01979 Amidohydrolase family LIL_10269 PF01476 LysM domain LIL_10269 PF01551 Peptidase family M23 LIL_10270 PF00009 Elongation factor Tu GTP binding domain LIL_10270 PF00679 Elongation factor G C-terminus LIL_10270 PF03144 Elongation factor Tu domain 2 LIL_10270 PF03764 Elongation factor G, domain IV LIL_10270 PF14492 Elongation Factor G, domain II LIL_10272 PF02386 Cation transport protein LIL_10273 PF12844 Helix-turn-helix domain LIL_10274 PF01381 Helix-turn-helix LIL_10276 PF01040 UbiA prenyltransferase family LIL_10277 PF13905 Thioredoxin-like LIL_10280 PF08327 Activator of Hsp90 ATPase homolog 1-like protein LIL_10281 PF00107 Zinc-binding dehydrogenase LIL_10281 PF08240 Alcohol dehydrogenase GroES-like domain LIL_10282 PF00348 Polyprenyl synthetase LIL_10283 PF01479 S4 domain LIL_10283 PF01728 FtsJ-like methyltransferase LIL_10284 PF01757 LIL_10284 LIL_10285 PF01804 Penicillin amidase LIL_10287 PF01242 6-pyruvoyl tetrahydropterin synthase LIL_10288 PF06508 Queuosine biosynthesis protein QueC LIL_10289 PF12769 Domain of unknown function (DUF3814) LIL_10290 PF02233 NAD(P) transhydrogenase beta subunit LIL_10294 PF03009 Glycerophosphoryl diester phosphodiesterase family LIL_10295 PF03928 Domain of unknown function (DUF336) LIL_10296 PF04828 Glutathione-dependent formaldehyde-activating enzyme LIL_10298 PF02049 LIL_10298 LIL_10299 PF00460 Flagella basal body rod protein LIL_10299 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIL_10301 PF01740 STAS domain LIL_10303 PF13174 Tetratricopeptide repeat LIL_10303 PF13181 Tetratricopeptide repeat LIL_10303 PF13432 Tetratricopeptide repeat LIL_10304 PF12158 LIL_10304 LIL_10305 PF04304 LIL_10305 LIL_10307 PF01738 Dienelactone hydrolase family LIL_10310 PF02347 Glycine cleavage system P-protein LIL_10311 PF01597 Glycine cleavage H-protein LIL_10312 PF01571 Aminomethyltransferase folate-binding domain LIL_10312 PF08669 Glycine cleavage T-protein C-terminal barrel domain LIL_10315 PF05262 LIL_10315 LIL_10316 PF00266 Aminotransferase class-V LIL_10318 PF02502 Ribose/Galactose Isomerase LIL_10322 PF13181 Tetratricopeptide repeat LIL_10325 PF01676 Metalloenzyme superfamily LIL_10326 PF13599 Pentapeptide repeats (9 copies) LIL_10327 PF07719 Tetratricopeptide repeat LIL_10327 PF13174 Tetratricopeptide repeat LIL_10327 PF13181 Tetratricopeptide repeat LIL_10329 PF08241 Methyltransferase domain LIL_10331 PF14903 LIL_10331 LIL_10333 PF02397 LIL_10333 LIL_10334 PF00072 Response regulator receiver domain LIL_10337 PF00919 Uncharacterized protein family UPF0004 LIL_10337 PF04055 Radical SAM superfamily LIL_10340 PF00004 ATPase family associated with various cellular activities (AAA) LIL_10340 PF02151 UvrB/uvrC motif LIL_10340 PF02861 Clp amino terminal domain LIL_10340 PF07724 AAA domain (Cdc48 subfamily) LIL_10340 PF10431 C-terminal, D2-small domain, of ClpB protein LIL_10341 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain LIL_10344 PF00589 Phage integrase family LIL_10345 PF01740 STAS domain LIL_10346 PF13231 LIL_10346 LIL_10347 PF13472 GDSL-like Lipase/Acylhydrolase family LIL_10348 PF01731 Arylesterase LIL_10350 PF00300 Histidine phosphatase superfamily (branch 1) LIL_10351 PF00005 ABC transporter LIL_10352 PF12730 LIL_10352 LIL_10353 PF08668 HDOD domain LIL_10354 PF00398 Ribosomal RNA adenine dimethylase LIL_10355 PF03772 LIL_10355 LIL_10357 PF00579 tRNA synthetases class I (W and Y) LIL_10359 PF03548 Outer membrane lipoprotein carrier protein LolA LIL_10360 PF00766 Electron transfer flavoprotein FAD-binding domain LIL_10360 PF01012 Electron transfer flavoprotein domain LIL_10361 PF01012 Electron transfer flavoprotein domain LIL_10363 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_10363 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_10363 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_10364 PF01596 O-methyltransferase LIL_10366 PF05345 Putative Ig domain LIL_10368 PF06739 LIL_10368 LIL_10370 PF06739 LIL_10370 LIL_10372 PF03976 Polyphosphate kinase 2 (PPK2) LIL_10373 PF00440 Bacterial regulatory proteins, tetR family LIL_10376 PF03551 Transcriptional regulator PadR-like family LIL_10378 PF06445 GyrI-like small molecule binding domain LIL_10380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_10380 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_10381 PF01676 Metalloenzyme superfamily LIL_10381 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LIL_10384 PF04542 Sigma-70 region 2 LIL_10384 PF08281 Sigma-70, region 4 LIL_10385 PF04773 FecR protein LIL_10387 PF07681 LIL_10387 LIL_10389 PF00005 ABC transporter LIL_10389 PF12848 ABC transporter LIL_10389 PF16326 LIL_10389 LIL_10390 PF00581 Rhodanese-like domain LIL_10391 PF00149 Calcineurin-like phosphoesterase LIL_10392 PF00665 Integrase core domain LIL_10393 PF01527 Transposase LIL_10395 PF00440 Bacterial regulatory proteins, tetR family LIL_10395 PF13305 WHG domain LIL_10396 PF00108 Thiolase, N-terminal domain LIL_10396 PF02803 Thiolase, C-terminal domain LIL_10398 PF01510 N-acetylmuramoyl-L-alanine amidase LIL_10402 PF00885 6,7-dimethyl-8-ribityllumazine synthase LIL_10403 PF01029 NusB family LIL_10404 PF00515 Tetratricopeptide repeat LIL_10404 PF13414 TPR repeat LIL_10404 PF13431 Tetratricopeptide repeat LIL_10404 PF13432 Tetratricopeptide repeat LIL_10404 PF14559 Tetratricopeptide repeat LIL_10405 PF13646 HEAT repeats LIL_10407 PF00682 HMGL-like LIL_10409 PF13646 HEAT repeats LIL_10411 PF03739 LIL_10411 LIL_10413 PF08240 Alcohol dehydrogenase GroES-like domain LIL_10417 PF02371 LIL_10417 LIL_10418 PF01548 LIL_10418 LIL_10422 PF13280 LIL_10422 LIL_10423 PF13245 Part of AAA domain LIL_10423 PF13361 UvrD-like helicase C-terminal domain LIL_10428 PF13280 LIL_10428 LIL_10429 PF08544 GHMP kinases C terminal LIL_10430 PF00483 Nucleotidyl transferase LIL_10431 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LIL_10431 PF14572 Phosphoribosyl synthetase-associated domain LIL_10432 PF01386 Ribosomal L25p family LIL_10432 PF14693 Ribosomal protein TL5, C-terminal domain LIL_10433 PF01195 Peptidyl-tRNA hydrolase LIL_10434 PF00004 ATPase family associated with various cellular activities (AAA) LIL_10434 PF01434 Peptidase family M41 LIL_10434 PF06480 FtsH Extracellular LIL_10435 PF01878 EVE domain LIL_10437 PF08974 Domain of unknown function (DUF1877) LIL_10439 PF01564 Spermine/spermidine synthase LIL_10441 PF13785 LIL_10441 LIL_10442 PF00543 Nitrogen regulatory protein P-II LIL_10443 PF00909 Ammonium Transporter Family LIL_10445 PF02371 LIL_10445 LIL_10446 PF01548 LIL_10446 LIL_10448 PF01039 Carboxyl transferase domain LIL_10450 PF01380 SIS domain LIL_10450 PF13522 Glutamine amidotransferase domain LIL_10451 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LIL_10451 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LIL_10451 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LIL_10451 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LIL_10452 PF01649 Ribosomal protein S20 LIL_10456 PF00535 Glycosyl transferase family 2 LIL_10458 PF13444 Acetyltransferase (GNAT) domain LIL_10463 PF00561 alpha/beta hydrolase fold LIL_10464 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_10464 PF02743 Cache domain LIL_10465 PF00962 Adenosine/AMP deaminase LIL_10466 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIL_10468 PF06291 LIL_10468 LIL_10470 PF02368 Bacterial Ig-like domain (group 2) LIL_10471 PF02368 Bacterial Ig-like domain (group 2) LIL_10472 PF02537 LIL_10472 LIL_10474 PF08386 TAP-like protein LIL_10474 PF12146 Putative lysophospholipase LIL_10476 PF00472 RF-1 domain LIL_10476 PF03462 PCRF domain LIL_10478 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LIL_10478 PF02843 Phosphoribosylglycinamide synthetase, C domain LIL_10478 PF02844 Phosphoribosylglycinamide synthetase, N domain LIL_10479 PF00133 tRNA synthetases class I (I, L, M and V) LIL_10479 PF08264 Anticodon-binding domain of tRNA LIL_10479 PF10458 Valyl tRNA synthetase tRNA binding arm LIL_10481 PF00076 RNA recognition motif LIL_10483 PF13302 Acetyltransferase (GNAT) domain LIL_10484 PF00717 Peptidase S24-like LIL_10489 PF09851 LIL_10489 LIL_10489 PF13421 LIL_10489 LIL_10490 PF00291 Pyridoxal-phosphate dependent enzyme LIL_10495 PF02493 MORN repeat LIL_10496 PF00873 AcrB/AcrD/AcrF family LIL_10497 PF00873 AcrB/AcrD/AcrF family LIL_10498 PF16576 LIL_10498 LIL_10500 PF13174 Tetratricopeptide repeat LIL_10500 PF14559 Tetratricopeptide repeat LIL_10502 PF13205 Bacterial Ig-like domain LIL_10503 PF02321 Outer membrane efflux protein LIL_10504 PF07603 LIL_10504 LIL_10504 PF13290 LIL_10504 LIL_10505 PF07603 LIL_10505 LIL_10505 PF13290 LIL_10505 LIL_10506 PF07603 LIL_10506 LIL_10508 PF05345 Putative Ig domain LIL_10509 PF07591 Pretoxin HINT domain LIL_10514 PF00565 Staphylococcal nuclease homologue LIL_10514 PF06250 LIL_10514 LIL_10515 PF07591 Pretoxin HINT domain LIL_10516 PF13683 LIL_10516 LIL_10519 PF00133 tRNA synthetases class I (I, L, M and V) LIL_10519 PF08264 Anticodon-binding domain of tRNA LIL_10519 PF13603 Leucyl-tRNA synthetase, Domain 2 LIL_10521 PF00005 ABC transporter LIL_10522 PF02687 LIL_10522 LIL_10525 PF02622 Uncharacterized ACR, COG1678 LIL_10526 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LIL_10526 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LIL_10527 PF00226 DnaJ domain LIL_10527 PF00684 DnaJ central domain LIL_10527 PF01556 DnaJ C terminal domain LIL_10528 PF00012 Hsp70 protein LIL_10529 PF01025 GrpE LIL_10530 PF01628 HrcA protein C terminal domain LIL_10531 PF01451 Low molecular weight phosphotyrosine protein phosphatase LIL_10532 PF00905 Penicillin binding protein transpeptidase domain LIL_10532 PF03717 Penicillin-binding Protein dimerisation domain LIL_10532 PF03793 PASTA domain LIL_10533 PF01973 LIL_10533 LIL_10535 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LIL_10536 PF00005 ABC transporter LIL_10536 PF00664 ABC transporter transmembrane region LIL_10537 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIL_10538 PF00905 Penicillin binding protein transpeptidase domain LIL_10538 PF00912 Transglycosylase LIL_10539 PF08874 LIL_10539 LIL_10539 PF12395 LIL_10539 LIL_10540 PF08874 LIL_10540 LIL_10542 PF00691 OmpA family LIL_10542 PF07676 WD40-like Beta Propeller Repeat LIL_10543 PF00005 ABC transporter LIL_10543 PF12848 ABC transporter LIL_10545 PF11731 LIL_10545 LIL_10546 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_10548 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_10548 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_10548 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_10549 PF07642 LIL_10549 LIL_10550 PF01625 Peptide methionine sulfoxide reductase LIL_10551 PF00561 alpha/beta hydrolase fold LIL_10554 PF03167 Uracil DNA glycosylase superfamily LIL_10555 PF01725 Ham1 family LIL_10556 PF01740 STAS domain LIL_10559 PF00072 Response regulator receiver domain LIL_10559 PF00512 His Kinase A (phospho-acceptor) domain LIL_10559 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10560 PF00561 alpha/beta hydrolase fold LIL_10561 PF12680 SnoaL-like domain LIL_10565 PF00072 Response regulator receiver domain LIL_10566 PF07813 LTXXQ motif family protein LIL_10567 PF04542 Sigma-70 region 2 LIL_10567 PF08281 Sigma-70, region 4 LIL_10569 PF14240 LIL_10569 LIL_10571 PF02630 SCO1/SenC LIL_10572 PF00436 Single-strand binding protein family LIL_10573 PF00378 Enoyl-CoA hydratase/isomerase family LIL_10575 PF13673 Acetyltransferase (GNAT) domain LIL_10576 PF07600 LIL_10576 LIL_10577 PF01740 STAS domain LIL_10578 PF00742 Homoserine dehydrogenase LIL_10578 PF01842 ACT domain LIL_10578 PF03447 Homoserine dehydrogenase, NAD binding domain LIL_10582 PF01979 Amidohydrolase family LIL_10584 PF01926 50S ribosome-binding GTPase LIL_10584 PF13167 LIL_10584 LIL_10584 PF16360 LIL_10584 LIL_10586 PF13646 HEAT repeats LIL_10587 PF00072 Response regulator receiver domain LIL_10588 PF00005 ABC transporter LIL_10588 PF00664 ABC transporter transmembrane region LIL_10589 PF00117 Glutamine amidotransferase class-I LIL_10590 PF00425 chorismate binding enzyme LIL_10590 PF04715 Anthranilate synthase component I, N terminal region LIL_10591 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_10591 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_10591 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_10594 PF00476 DNA polymerase family A LIL_10594 PF01367 5'-3' exonuclease, C-terminal SAM fold LIL_10594 PF01612 3'-5' exonuclease LIL_10594 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LIL_10595 PF00534 Glycosyl transferases group 1 LIL_10595 PF13439 Glycosyltransferase Family 4 LIL_10596 PF13230 Glutamine amidotransferases class-II LIL_10597 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_10597 PF00909 Ammonium Transporter Family LIL_10599 PF01734 Patatin-like phospholipase LIL_10600 PF03091 CutA1 divalent ion tolerance protein LIL_10601 PF00691 OmpA family LIL_10602 PF07228 Stage II sporulation protein E (SpoIIE) LIL_10602 PF07695 LIL_10602 LIL_10603 PF02558 Ketopantoate reductase PanE/ApbA LIL_10603 PF08546 Ketopantoate reductase PanE/ApbA C terminal LIL_10607 PF13181 Tetratricopeptide repeat LIL_10609 PF07228 Stage II sporulation protein E (SpoIIE) LIL_10609 PF07695 LIL_10609 LIL_10610 PF14257 LIL_10610 LIL_10611 PF01575 MaoC like domain LIL_10612 PF13452 N-terminal half of MaoC dehydratase LIL_10613 PF12146 Putative lysophospholipase LIL_10614 PF00884 Sulfatase LIL_10615 PF10604 Polyketide cyclase / dehydrase and lipid transport LIL_10616 PF11253 LIL_10616 LIL_10617 PF00210 Ferritin-like domain LIL_10618 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_10619 PF00004 ATPase family associated with various cellular activities (AAA) LIL_10619 PF02190 ATP-dependent protease La (LON) domain LIL_10619 PF05362 Lon protease (S16) C-terminal proteolytic domain LIL_10620 PF13181 Tetratricopeptide repeat LIL_10620 PF13414 TPR repeat LIL_10621 PF02542 YgbB family LIL_10623 PF00583 Acetyltransferase (GNAT) family LIL_10625 PF13181 Tetratricopeptide repeat LIL_10626 PF02481 DNA recombination-mediator protein A LIL_10627 PF05090 LIL_10627 LIL_10628 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LIL_10630 PF00534 Glycosyl transferases group 1 LIL_10631 PF06289 LIL_10631 LIL_10632 PF01618 LIL_10632 LIL_10633 PF00691 OmpA family LIL_10633 PF13677 LIL_10633 LIL_10634 PF03748 LIL_10634 LIL_10635 PF02348 Cytidylyltransferase LIL_10636 PF01740 STAS domain LIL_10638 PF00034 Cytochrome c LIL_10639 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LIL_10639 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LIL_10640 PF10116 LIL_10640 LIL_10641 PF00005 ABC transporter LIL_10642 PF01458 Uncharacterized protein family (UPF0051) LIL_10643 PF00355 Rieske [2Fe-2S] domain LIL_10644 PF00266 Aminotransferase class-V LIL_10645 PF01592 NifU-like N terminal domain LIL_10646 PF01883 Domain of unknown function DUF59 LIL_10647 PF13302 Acetyltransferase (GNAT) domain LIL_10648 PF08002 Protein of unknown function (DUF1697) LIL_10649 PF07598 LIL_10649 LIL_10651 PF00563 EAL domain LIL_10651 PF10388 EAL-domain associated signalling protein domain LIL_10655 PF04542 Sigma-70 region 2 LIL_10655 PF08281 Sigma-70, region 4 LIL_10657 PF01207 Dihydrouridine synthase (Dus) LIL_10659 PF01266 FAD dependent oxidoreductase LIL_10659 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LIL_10662 PF01209 ubiE/COQ5 methyltransferase family LIL_10664 PF04020 LIL_10664 LIL_10666 PF03372 Endonuclease/Exonuclease/phosphatase family LIL_10667 PF07690 Major Facilitator Superfamily LIL_10668 PF01872 RibD C-terminal domain LIL_10670 PF08327 Activator of Hsp90 ATPase homolog 1-like protein LIL_10671 PF10604 Polyketide cyclase / dehydrase and lipid transport LIL_10672 PF08327 Activator of Hsp90 ATPase homolog 1-like protein LIL_10673 PF08327 Activator of Hsp90 ATPase homolog 1-like protein LIL_10674 PF13564 LIL_10674 LIL_10675 PF12840 Helix-turn-helix domain LIL_10676 PF13279 Thioesterase-like superfamily LIL_10677 PF04471 Restriction endonuclease LIL_10677 PF14338 LIL_10677 LIL_10679 PF00665 Integrase core domain LIL_10680 PF01527 Transposase LIL_10681 PF14066 LIL_10681 LIL_10682 PF00005 ABC transporter LIL_10686 PF00005 ABC transporter LIL_10687 PF03379 LIL_10687 LIL_10688 PF01578 LIL_10688 LIL_10689 PF00072 Response regulator receiver domain LIL_10689 PF07228 Stage II sporulation protein E (SpoIIE) LIL_10690 PF01259 SAICAR synthetase LIL_10691 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase LIL_10692 PF13507 CobB/CobQ-like glutamine amidotransferase domain LIL_10694 PF00034 Cytochrome c LIL_10694 PF03150 Di-haem cytochrome c peroxidase LIL_10696 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LIL_10697 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_10700 PF01124 MAPEG family LIL_10701 PF01895 PhoU domain LIL_10702 PF05406 WGR domain LIL_10705 PF01145 SPFH domain / Band 7 family LIL_10707 PF07598 LIL_10707 LIL_10711 PF02230 Phospholipase/Carboxylesterase LIL_10712 PF13561 Enoyl-(Acyl carrier protein) reductase LIL_10721 PF01796 LIL_10721 LIL_10722 PF09375 Imelysin LIL_10723 PF06537 LIL_10723 LIL_10724 PF09375 Imelysin LIL_10725 PF07715 TonB-dependent Receptor Plug Domain LIL_10726 PF01447 Thermolysin metallopeptidase, catalytic domain LIL_10726 PF02868 Thermolysin metallopeptidase, alpha-helical domain LIL_10726 PF03413 Peptidase propeptide and YPEB domain LIL_10726 PF07504 Fungalysin/Thermolysin Propeptide Motif LIL_10728 PF15071 LIL_10728 LIL_10729 PF00583 Acetyltransferase (GNAT) family LIL_10729 PF00795 Carbon-nitrogen hydrolase LIL_10730 PF01565 FAD binding domain LIL_10730 PF02913 FAD linked oxidases, C-terminal domain LIL_10731 PF02503 Polyphosphate kinase middle domain LIL_10731 PF13089 Polyphosphate kinase N-terminal domain LIL_10731 PF13090 Polyphosphate kinase C-terminal domain LIL_10734 PF01548 LIL_10734 LIL_10735 PF02371 LIL_10735 LIL_10739 PF01520 N-acetylmuramoyl-L-alanine amidase LIL_10740 PF00270 DEAD/DEAH box helicase LIL_10740 PF00271 Helicase conserved C-terminal domain LIL_10741 PF13489 Methyltransferase domain LIL_10742 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease LIL_10745 PF16138 LIL_10745 LIL_10746 PF00883 Cytosol aminopeptidase family, catalytic domain LIL_10747 PF00578 AhpC/TSA family LIL_10749 PF00144 Beta-lactamase LIL_10752 PF01687 Riboflavin kinase LIL_10752 PF06574 FAD synthetase LIL_10753 PF07228 Stage II sporulation protein E (SpoIIE) LIL_10753 PF16927 LIL_10753 LIL_10754 PF07228 Stage II sporulation protein E (SpoIIE) LIL_10755 PF07119 LIL_10755 LIL_10757 PF02465 LIL_10757 LIL_10757 PF07195 LIL_10757 LIL_10758 PF00230 Major intrinsic protein LIL_10760 PF01551 Peptidase family M23 LIL_10761 PF02371 LIL_10761 LIL_10762 PF01548 LIL_10762 LIL_10764 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LIL_10765 PF00467 KOW motif LIL_10765 PF02357 Transcription termination factor nusG LIL_10766 PF00298 Ribosomal protein L11, RNA binding domain LIL_10766 PF03946 Ribosomal protein L11, N-terminal domain LIL_10767 PF00687 Ribosomal protein L1p/L10e family LIL_10768 PF00466 Ribosomal protein L10 LIL_10769 PF00542 Ribosomal protein L7/L12 C-terminal domain LIL_10769 PF16320 LIL_10769 LIL_10770 PF00562 RNA polymerase Rpb2, domain 6 LIL_10770 PF04560 RNA polymerase Rpb2, domain 7 LIL_10770 PF04561 RNA polymerase Rpb2, domain 2 LIL_10770 PF04563 RNA polymerase beta subunit LIL_10770 PF04565 RNA polymerase Rpb2, domain 3 LIL_10770 PF10385 RNA polymerase beta subunit external 1 domain LIL_10771 PF00623 RNA polymerase Rpb1, domain 2 LIL_10771 PF04983 RNA polymerase Rpb1, domain 3 LIL_10771 PF04997 RNA polymerase Rpb1, domain 1 LIL_10771 PF04998 RNA polymerase Rpb1, domain 5 LIL_10771 PF05000 RNA polymerase Rpb1, domain 4 LIL_10772 PF00164 Ribosomal protein S12/S23 LIL_10773 PF00177 Ribosomal protein S7p/S5e LIL_10777 PF00586 AIR synthase related protein, N-terminal domain LIL_10777 PF02769 AIR synthase related protein, C-terminal domain LIL_10778 PF04264 YceI-like domain LIL_10779 PF00572 Ribosomal protein L13 LIL_10780 PF00380 Ribosomal protein S9/S16 LIL_10781 PF01411 tRNA synthetases class II (A) LIL_10781 PF02272 DHHA1 domain LIL_10781 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LIL_10782 PF04461 Protein of unknown function (DUF520) LIL_10786 PF00675 Insulinase (Peptidase family M16) LIL_10786 PF05193 Peptidase M16 inactive domain LIL_10787 PF05193 Peptidase M16 inactive domain LIL_10788 PF12706 Beta-lactamase superfamily domain LIL_10789 PF01596 O-methyltransferase LIL_10791 PF01520 N-acetylmuramoyl-L-alanine amidase LIL_10792 PF07602 LIL_10792 LIL_10797 PF07598 LIL_10797 LIL_10798 PF07599 LIL_10798 LIL_10802 PF04620 LIL_10802 LIL_10803 PF04620 LIL_10803 LIL_10804 PF01272 Transcription elongation factor, GreA/GreB, C-term LIL_10804 PF03449 Transcription elongation factor, N-terminal LIL_10809 PF00027 Cyclic nucleotide-binding domain LIL_10810 PF01757 LIL_10810 LIL_10811 PF10282 Lactonase, 7-bladed beta-propeller LIL_10817 PF00378 Enoyl-CoA hydratase/isomerase family LIL_10818 PF02110 Hydroxyethylthiazole kinase family LIL_10824 PF00378 Enoyl-CoA hydratase/isomerase family LIL_10825 PF02110 Hydroxyethylthiazole kinase family LIL_10831 PF00378 Enoyl-CoA hydratase/isomerase family LIL_10832 PF02110 Hydroxyethylthiazole kinase family LIL_10838 PF00378 Enoyl-CoA hydratase/isomerase family LIL_10839 PF02110 Hydroxyethylthiazole kinase family LIL_10845 PF00378 Enoyl-CoA hydratase/isomerase family LIL_10846 PF02110 Hydroxyethylthiazole kinase family LIL_10852 PF00378 Enoyl-CoA hydratase/isomerase family LIL_10853 PF02110 Hydroxyethylthiazole kinase family LIL_10859 PF00378 Enoyl-CoA hydratase/isomerase family LIL_10860 PF02110 Hydroxyethylthiazole kinase family LIL_10866 PF00378 Enoyl-CoA hydratase/isomerase family LIL_10867 PF02110 Hydroxyethylthiazole kinase family LIL_10873 PF00378 Enoyl-CoA hydratase/isomerase family LIL_10874 PF02110 Hydroxyethylthiazole kinase family LIL_10875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_10875 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_10875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_10876 PF01636 Phosphotransferase enzyme family LIL_10878 PF00300 Histidine phosphatase superfamily (branch 1) LIL_10879 PF07600 LIL_10879 LIL_10880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10881 PF00043 Glutathione S-transferase, C-terminal domain LIL_10881 PF02798 Glutathione S-transferase, N-terminal domain LIL_10882 PF03061 Thioesterase superfamily LIL_10883 PF00107 Zinc-binding dehydrogenase LIL_10883 PF08240 Alcohol dehydrogenase GroES-like domain LIL_10887 PF03918 Cytochrome C biogenesis protein LIL_10888 PF01578 LIL_10888 LIL_10888 PF16327 LIL_10888 LIL_10889 PF03100 CcmE LIL_10894 PF02698 DUF218 domain LIL_10896 PF13743 Thioredoxin LIL_10899 PF07602 LIL_10899 LIL_10901 PF01344 Kelch motif LIL_10903 PF03534 Salmonella virulence plasmid 65kDa B protein LIL_10903 PF05593 LIL_10903 LIL_10904 PF12833 Helix-turn-helix domain LIL_10907 PF16927 LIL_10907 LIL_10909 PF05593 LIL_10909 LIL_10912 PF13855 Leucine rich repeat LIL_10913 PF13855 Leucine rich repeat LIL_10914 PF13855 Leucine rich repeat LIL_10915 PF00560 Leucine Rich Repeat LIL_10915 PF13855 Leucine rich repeat LIL_10916 PF00560 Leucine Rich Repeat LIL_10916 PF13855 Leucine rich repeat LIL_10917 PF06983 3-demethylubiquinone-9 3-methyltransferase LIL_10918 PF01872 RibD C-terminal domain LIL_10920 PF13302 Acetyltransferase (GNAT) domain LIL_10921 PF01370 NAD dependent epimerase/dehydratase family LIL_10921 PF08338 Domain of unknown function (DUF1731) LIL_10925 PF00953 Glycosyl transferase family 4 LIL_10926 PF00701 Dihydrodipicolinate synthetase family LIL_10927 PF01113 Dihydrodipicolinate reductase, N-terminus LIL_10927 PF05173 Dihydrodipicolinate reductase, C-terminus LIL_10928 PF02457 DisA bacterial checkpoint controller nucleotide-binding LIL_10929 PF07949 YbbR-like protein LIL_10930 PF01648 4'-phosphopantetheinyl transferase superfamily LIL_10931 PF07719 Tetratricopeptide repeat LIL_10932 PF04519 LIL_10932 LIL_10934 PF00318 Ribosomal protein S2 LIL_10935 PF00889 Elongation factor TS LIL_10936 PF00696 Amino acid kinase family LIL_10937 PF01765 Ribosome recycling factor LIL_10938 PF01255 Putative undecaprenyl diphosphate synthase LIL_10939 PF01148 Cytidylyltransferase family LIL_10940 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LIL_10940 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal LIL_10940 PF13288 DXP reductoisomerase C-terminal domain LIL_10941 PF02163 Peptidase family M50 LIL_10942 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIL_10942 PF03129 Anticodon binding domain LIL_10942 PF04073 Aminoacyl-tRNA editing domain LIL_10943 PF00291 Pyridoxal-phosphate dependent enzyme LIL_10944 PF00290 Tryptophan synthase alpha chain LIL_10945 PF07600 LIL_10945 LIL_10946 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_10946 PF05226 LIL_10946 LIL_10947 PF02779 Transketolase, pyrimidine binding domain LIL_10947 PF02780 Transketolase, C-terminal domain LIL_10947 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LIL_10948 PF10373 Est1 DNA/RNA binding domain LIL_10948 PF13181 Tetratricopeptide repeat LIL_10949 PF03781 Sulfatase-modifying factor enzyme 1 LIL_10950 PF01850 PIN domain LIL_10952 PF06739 LIL_10952 LIL_10955 PF07598 LIL_10955 LIL_10958 PF14522 Cytochrome c7 LIL_10959 PF01568 Molydopterin dinucleotide binding domain LIL_10959 PF12838 4Fe-4S dicluster domain LIL_10960 PF03916 LIL_10960 LIL_10961 PF11821 LIL_10961 LIL_10962 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LIL_10965 PF16310 LIL_10965 LIL_10966 PF00593 TonB dependent receptor LIL_10966 PF07715 TonB-dependent Receptor Plug Domain LIL_10968 PF00255 Glutathione peroxidase LIL_10969 PF04187 Protein of unknown function, DUF399 LIL_10970 PF00905 Penicillin binding protein transpeptidase domain LIL_10970 PF00912 Transglycosylase LIL_10973 PF08818 Domain of unknown function (DU1801) LIL_10975 PF00805 Pentapeptide repeats (8 copies) LIL_10975 PF01592 NifU-like N terminal domain LIL_10976 PF01197 Ribosomal protein L31 LIL_10977 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIL_10977 PF07497 Rho termination factor, RNA-binding domain LIL_10977 PF07498 Rho termination factor, N-terminal domain LIL_10982 PF03372 Endonuclease/Exonuclease/phosphatase family LIL_10983 PF03372 Endonuclease/Exonuclease/phosphatase family LIL_10984 PF13181 Tetratricopeptide repeat LIL_10986 PF00378 Enoyl-CoA hydratase/isomerase family LIL_10988 PF00072 Response regulator receiver domain LIL_10988 PF00989 PAS fold LIL_10988 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_10988 PF07568 LIL_10988 LIL_10989 PF05990 Alpha/beta hydrolase of unknown function (DUF900) LIL_10991 PF01476 LysM domain LIL_10991 PF01551 Peptidase family M23 LIL_10992 PF04519 LIL_10992 LIL_10993 PF00905 Penicillin binding protein transpeptidase domain LIL_10993 PF00912 Transglycosylase LIL_10994 PF00882 Zinc dependent phospholipase C LIL_10995 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LIL_10995 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LIL_10996 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LIL_10999 PF11863 LIL_10999 LIL_11009 PF04865 LIL_11009 LIL_11010 PF12571 LIL_11010 LIL_11015 PF00561 alpha/beta hydrolase fold LIL_11016 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_11019 PF01557 Fumarylacetoacetate (FAA) hydrolase family LIL_11023 PF01433 Peptidase family M1 LIL_11023 PF11838 ERAP1-like C-terminal domain LIL_11024 PF05977 Transmembrane secretion effector LIL_11025 PF00293 NUDIX domain LIL_11026 PF00580 UvrD/REP helicase N-terminal domain LIL_11026 PF13361 UvrD-like helicase C-terminal domain LIL_11031 PF12840 Helix-turn-helix domain LIL_11032 PF08327 Activator of Hsp90 ATPase homolog 1-like protein LIL_11035 PF13523 Acetyltransferase (GNAT) domain LIL_11036 PF02684 LIL_11036 LIL_11037 PF06230 Protein of unknown function (DUF1009) LIL_11038 PF09723 LIL_11038 LIL_11039 PF08239 Bacterial SH3 domain LIL_11040 PF02321 Outer membrane efflux protein LIL_11041 PF00549 CoA-ligase LIL_11041 PF02629 CoA binding domain LIL_11042 PF00549 CoA-ligase LIL_11042 PF08442 ATP-grasp domain LIL_11045 PF00919 Uncharacterized protein family UPF0004 LIL_11045 PF01938 TRAM domain LIL_11045 PF04055 Radical SAM superfamily LIL_11046 PF03739 LIL_11046 LIL_11048 PF00709 Adenylosuccinate synthetase LIL_11049 PF13393 Histidyl-tRNA synthetase LIL_11050 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LIL_11050 PF01553 Acyltransferase LIL_11050 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LIL_11051 PF00355 Rieske [2Fe-2S] domain LIL_11051 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LIL_11053 PF00692 dUTPase LIL_11054 PF07600 LIL_11054 LIL_11056 PF13482 RNase_H superfamily LIL_11057 PF00795 Carbon-nitrogen hydrolase LIL_11059 PF03280 Proteobacterial lipase chaperone protein LIL_11060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIL_11060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIL_11063 PF08713 DNA alkylation repair enzyme LIL_11064 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_11065 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) LIL_11067 PF13671 AAA domain LIL_11069 PF07614 LIL_11069 LIL_11070 PF01527 Transposase LIL_11071 PF00665 Integrase core domain LIL_11072 PF03548 Outer membrane lipoprotein carrier protein LolA LIL_11073 PF13413 Helix-turn-helix domain LIL_11073 PF13464 LIL_11073 LIL_11074 PF00919 Uncharacterized protein family UPF0004 LIL_11074 PF04055 Radical SAM superfamily LIL_11075 PF01066 CDP-alcohol phosphatidyltransferase LIL_11076 PF00591 Glycosyl transferase family, a/b domain LIL_11076 PF02885 Glycosyl transferase family, helical bundle domain LIL_11077 PF02699 Preprotein translocase subunit LIL_11079 PF02355 Protein export membrane protein LIL_11080 PF02355 Protein export membrane protein LIL_11081 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LIL_11082 PF00677 Lumazine binding domain LIL_11083 PF00925 GTP cyclohydrolase II LIL_11083 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LIL_11089 PF13531 Bacterial extracellular solute-binding protein LIL_11090 PF00528 Binding-protein-dependent transport system inner membrane component LIL_11091 PF00528 Binding-protein-dependent transport system inner membrane component LIL_11092 PF00005 ABC transporter LIL_11092 PF12857 LIL_11092 LIL_11093 PF07603 LIL_11093 LIL_11094 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LIL_11095 PF09995 LIL_11095 LIL_11097 PF00069 Protein kinase domain LIL_11097 PF01590 GAF domain LIL_11097 PF07228 Stage II sporulation protein E (SpoIIE) LIL_11097 PF13191 AAA ATPase domain LIL_11098 PF01243 Pyridoxamine 5'-phosphate oxidase LIL_11098 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LIL_11104 PF00501 AMP-binding enzyme LIL_11105 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIL_11106 PF01119 DNA mismatch repair protein, C-terminal domain LIL_11106 PF08676 MutL C terminal dimerisation domain LIL_11106 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11107 PF09335 LIL_11107 LIL_11108 PF13855 Leucine rich repeat LIL_11110 PF00004 ATPase family associated with various cellular activities (AAA) LIL_11110 PF12002 MgsA AAA+ ATPase C terminal LIL_11110 PF16193 LIL_11110 LIL_11112 PF00155 Aminotransferase class I and II LIL_11115 PF00111 2Fe-2S iron-sulfur cluster binding domain LIL_11115 PF00141 Peroxidase LIL_11115 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_11116 PF00072 Response regulator receiver domain LIL_11116 PF00563 EAL domain LIL_11116 PF00990 GGDEF domain LIL_11117 PF00072 Response regulator receiver domain LIL_11119 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LIL_11121 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_11121 PF02743 Cache domain LIL_11125 PF07228 Stage II sporulation protein E (SpoIIE) LIL_11126 PF00378 Enoyl-CoA hydratase/isomerase family LIL_11127 PF02643 Uncharacterized ACR, COG1430 LIL_11128 PF11810 LIL_11128 LIL_11129 PF03062 LIL_11129 LIL_11130 PF07238 PilZ domain LIL_11131 PF04542 Sigma-70 region 2 LIL_11131 PF08281 Sigma-70, region 4 LIL_11133 PF13279 Thioesterase-like superfamily LIL_11135 PF03741 LIL_11135 LIL_11136 PF13911 AhpC/TSA antioxidant enzyme LIL_11137 PF00582 Universal stress protein family LIL_11139 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_11140 PF13302 Acetyltransferase (GNAT) domain LIL_11141 PF01548 LIL_11141 LIL_11141 PF02371 LIL_11141 LIL_11143 PF01694 Rhomboid family LIL_11144 PF12706 Beta-lactamase superfamily domain LIL_11145 PF00905 Penicillin binding protein transpeptidase domain LIL_11145 PF00912 Transglycosylase LIL_11146 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LIL_11146 PF00364 Biotin-requiring enzyme LIL_11146 PF02817 e3 binding domain LIL_11147 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIL_11147 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIL_11148 PF00676 Dehydrogenase E1 component LIL_11148 PF02779 Transketolase, pyrimidine binding domain LIL_11148 PF16078 LIL_11148 LIL_11148 PF16870 LIL_11148 LIL_11151 PF14257 LIL_11151 LIL_11154 PF00183 Hsp90 protein LIL_11154 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11155 PF07719 Tetratricopeptide repeat LIL_11158 PF00117 Glutamine amidotransferase class-I LIL_11158 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LIL_11159 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIL_11159 PF03129 Anticodon binding domain LIL_11159 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LIL_11161 PF00707 Translation initiation factor IF-3, C-terminal domain LIL_11161 PF05198 Translation initiation factor IF-3, N-terminal domain LIL_11162 PF01632 Ribosomal protein L35 LIL_11163 PF00453 Ribosomal protein L20 LIL_11165 PF05164 Cell division protein ZapA LIL_11166 PF01812 5-formyltetrahydrofolate cyclo-ligase family LIL_11167 PF01584 CheW-like domain LIL_11168 PF01584 CheW-like domain LIL_11168 PF01627 Hpt domain LIL_11168 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11168 PF02895 Signal transducing histidine kinase, homodimeric domain LIL_11168 PF07194 P2 response regulator binding domain LIL_11168 PF13690 Chemotaxis phosphatase CheX LIL_11169 PF00072 Response regulator receiver domain LIL_11169 PF01339 CheB methylesterase LIL_11170 PF00072 Response regulator receiver domain LIL_11171 PF02616 ScpA/B protein LIL_11172 PF04079 Putative transcriptional regulators (Ypuh-like) LIL_11173 PF00800 Prephenate dehydratase LIL_11173 PF01817 Chorismate mutase type II LIL_11173 PF01842 ACT domain LIL_11174 PF02153 Prephenate dehydrogenase LIL_11175 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LIL_11176 PF02224 Cytidylate kinase LIL_11177 PF00575 S1 RNA binding domain LIL_11179 PF01634 ATP phosphoribosyltransferase LIL_11180 PF01783 Ribosomal L32p protein family LIL_11181 PF02504 Fatty acid synthesis protein LIL_11189 PF00884 Sulfatase LIL_11191 PF00884 Sulfatase LIL_11193 PF00440 Bacterial regulatory proteins, tetR family LIL_11195 PF02687 LIL_11195 LIL_11195 PF12704 MacB-like periplasmic core domain LIL_11196 PF00005 ABC transporter LIL_11200 PF01478 Type IV leader peptidase family LIL_11200 PF06750 LIL_11200 LIL_11201 PF00155 Aminotransferase class I and II LIL_11202 PF07728 AAA domain (dynein-related subfamily) LIL_11203 PF07600 LIL_11203 LIL_11204 PF12796 Ankyrin repeats (3 copies) LIL_11205 PF01668 SmpB protein LIL_11206 PF01926 50S ribosome-binding GTPase LIL_11206 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LIL_11207 PF02660 LIL_11207 LIL_11210 PF01973 LIL_11210 LIL_11211 PF02463 RecF/RecN/SMC N terminal domain LIL_11212 PF07600 LIL_11212 LIL_11215 PF00120 Glutamine synthetase, catalytic domain LIL_11215 PF03951 Glutamine synthetase, beta-Grasp domain LIL_11218 PF02683 LIL_11218 LIL_11218 PF13899 Thioredoxin-like LIL_11220 PF00586 AIR synthase related protein, N-terminal domain LIL_11220 PF02769 AIR synthase related protein, C-terminal domain LIL_11221 PF13855 Leucine rich repeat LIL_11222 PF00133 tRNA synthetases class I (I, L, M and V) LIL_11222 PF08264 Anticodon-binding domain of tRNA LIL_11224 PF01740 STAS domain LIL_11229 PF00023 Ankyrin repeat LIL_11230 PF01425 Amidase LIL_11231 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LIL_11231 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LIL_11232 PF03109 LIL_11232 LIL_11233 PF01252 LIL_11233 LIL_11234 PF00027 Cyclic nucleotide-binding domain LIL_11235 PF01594 LIL_11235 LIL_11236 PF00892 EamA-like transporter family LIL_11237 PF01758 Sodium Bile acid symporter family LIL_11239 PF04028 LIL_11239 LIL_11241 PF00072 Response regulator receiver domain LIL_11242 PF00512 His Kinase A (phospho-acceptor) domain LIL_11242 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11242 PF05227 CHASE3 domain LIL_11244 PF13489 Methyltransferase domain LIL_11245 PF09587 Bacterial capsule synthesis protein PGA_cap LIL_11247 PF13855 Leucine rich repeat LIL_11248 PF07715 TonB-dependent Receptor Plug Domain LIL_11250 PF12796 Ankyrin repeats (3 copies) LIL_11250 PF13857 Ankyrin repeats (many copies) LIL_11253 PF08877 MepB protein LIL_11254 PF03816 Cell envelope-related transcriptional attenuator domain LIL_11254 PF13399 LytR cell envelope-related transcriptional attenuator LIL_11255 PF02410 Oligomerisation domain LIL_11256 PF03062 LIL_11256 LIL_11259 PF13905 Thioredoxin-like LIL_11260 PF00730 HhH-GPD superfamily base excision DNA repair protein LIL_11261 PF07690 Major Facilitator Superfamily LIL_11262 PF02678 Pirin LIL_11262 PF05726 Pirin C-terminal cupin domain LIL_11265 PF00009 Elongation factor Tu GTP binding domain LIL_11265 PF00679 Elongation factor G C-terminus LIL_11265 PF03144 Elongation factor Tu domain 2 LIL_11266 PF01757 LIL_11266 LIL_11267 PF01965 DJ-1/PfpI family LIL_11271 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIL_11271 PF03129 Anticodon binding domain LIL_11272 PF13103 TonB C terminal LIL_11273 PF13367 LIL_11273 LIL_11274 PF06325 Ribosomal protein L11 methyltransferase (PrmA) LIL_11275 PF00294 pfkB family carbohydrate kinase LIL_11279 PF03176 MMPL family LIL_11281 PF07598 LIL_11281 LIL_11282 PF07598 LIL_11282 LIL_11285 PF04116 LIL_11285 LIL_11286 PF00464 Serine hydroxymethyltransferase LIL_11287 PF03099 Biotin/lipoate A/B protein ligase family LIL_11289 PF03372 Endonuclease/Exonuclease/phosphatase family LIL_11290 PF13714 Phosphoenolpyruvate phosphomutase LIL_11291 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIL_11292 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_11292 PF13185 GAF domain LIL_11293 PF09345 LIL_11293 LIL_11295 PF00069 Protein kinase domain LIL_11295 PF01590 GAF domain LIL_11295 PF07228 Stage II sporulation protein E (SpoIIE) LIL_11295 PF13191 AAA ATPase domain LIL_11296 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LIL_11296 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LIL_11297 PF01144 Coenzyme A transferase LIL_11298 PF05635 23S rRNA-intervening sequence protein LIL_11298 PF13279 Thioesterase-like superfamily LIL_11299 PF13561 Enoyl-(Acyl carrier protein) reductase LIL_11300 PF13672 Protein phosphatase 2C LIL_11302 PF00109 Beta-ketoacyl synthase, N-terminal domain LIL_11302 PF02801 Beta-ketoacyl synthase, C-terminal domain LIL_11303 PF00072 Response regulator receiver domain LIL_11304 PF07588 LIL_11304 LIL_11305 PF03706 LIL_11305 LIL_11306 PF01230 HIT domain LIL_11307 PF00480 ROK family LIL_11308 PF00005 ABC transporter LIL_11310 PF04471 Restriction endonuclease LIL_11310 PF13432 Tetratricopeptide repeat LIL_11311 PF02371 LIL_11311 LIL_11312 PF01548 LIL_11312 LIL_11313 PF02120 Flagellar hook-length control protein FliK LIL_11314 PF03963 LIL_11314 LIL_11315 PF00460 Flagella basal body rod protein LIL_11315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIL_11315 PF07559 Flagellar basal body protein FlaE LIL_11316 PF01590 GAF domain LIL_11316 PF13487 HD domain LIL_11317 PF01381 Helix-turn-helix LIL_11318 PF12651 LIL_11318 LIL_11319 PF03328 HpcH/HpaI aldolase/citrate lyase family LIL_11320 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LIL_11320 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LIL_11322 PF01243 Pyridoxamine 5'-phosphate oxidase LIL_11323 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_11323 PF13185 GAF domain LIL_11324 PF01609 Transposase DDE domain LIL_11324 PF05598 LIL_11324 LIL_11325 PF00027 Cyclic nucleotide-binding domain LIL_11325 PF01734 Patatin-like phospholipase LIL_11326 PF00512 His Kinase A (phospho-acceptor) domain LIL_11326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11326 PF08447 PAS fold LIL_11326 PF08448 PAS fold LIL_11326 PF13426 PAS domain LIL_11327 PF00072 Response regulator receiver domain LIL_11328 PF00512 His Kinase A (phospho-acceptor) domain LIL_11328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11329 PF00072 Response regulator receiver domain LIL_11329 PF00563 EAL domain LIL_11332 PF13564 LIL_11332 LIL_11333 PF07602 LIL_11333 LIL_11334 PF03061 Thioesterase superfamily LIL_11338 PF04264 YceI-like domain LIL_11339 PF07635 LIL_11339 LIL_11342 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_11342 PF12729 LIL_11342 LIL_11345 PF00578 AhpC/TSA family LIL_11345 PF10417 C-terminal domain of 1-Cys peroxiredoxin LIL_11346 PF01458 Uncharacterized protein family (UPF0051) LIL_11348 PF00512 His Kinase A (phospho-acceptor) domain LIL_11348 PF00989 PAS fold LIL_11348 PF01590 GAF domain LIL_11348 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11348 PF13426 PAS domain LIL_11349 PF00515 Tetratricopeptide repeat LIL_11349 PF13181 Tetratricopeptide repeat LIL_11350 PF09852 LIL_11350 LIL_11351 PF07787 LIL_11351 LIL_11353 PF08570 LIL_11353 LIL_11354 PF04773 FecR protein LIL_11356 PF01544 CorA-like Mg2+ transporter protein LIL_11359 PF00440 Bacterial regulatory proteins, tetR family LIL_11360 PF03328 HpcH/HpaI aldolase/citrate lyase family LIL_11361 PF00717 Peptidase S24-like LIL_11362 PF09527 LIL_11362 LIL_11365 PF00119 ATP synthase A chain LIL_11366 PF00137 ATP synthase subunit C LIL_11367 PF00430 ATP synthase B/B' CF(0) LIL_11368 PF00213 ATP synthase delta (OSCP) subunit LIL_11369 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIL_11369 PF00306 ATP synthase alpha/beta chain, C terminal domain LIL_11369 PF02874 ATP synthase alpha/beta family, beta-barrel domain LIL_11370 PF00231 ATP synthase LIL_11371 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIL_11371 PF02874 ATP synthase alpha/beta family, beta-barrel domain LIL_11372 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LIL_11373 PF10531 SLBB domain LIL_11376 PF03062 LIL_11376 LIL_11379 PF08713 DNA alkylation repair enzyme LIL_11383 PF01966 HD domain LIL_11383 PF02541 Ppx/GppA phosphatase family LIL_11384 PF06723 MreB/Mbl protein LIL_11385 PF04085 rod shape-determining protein MreC LIL_11386 PF04093 LIL_11386 LIL_11387 PF00905 Penicillin binding protein transpeptidase domain LIL_11387 PF03717 Penicillin-binding Protein dimerisation domain LIL_11388 PF01098 LIL_11388 LIL_11392 PF01242 6-pyruvoyl tetrahydropterin synthase LIL_11393 PF13531 Bacterial extracellular solute-binding protein LIL_11394 PF13372 Alginate export LIL_11397 PF01416 tRNA pseudouridine synthase LIL_11398 PF09986 LIL_11398 LIL_11400 PF01553 Acyltransferase LIL_11401 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain LIL_11401 PF02785 Biotin carboxylase C-terminal domain LIL_11401 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIL_11402 PF00364 Biotin-requiring enzyme LIL_11403 PF00009 Elongation factor Tu GTP binding domain LIL_11403 PF16658 LIL_11403 LIL_11404 PF08818 Domain of unknown function (DU1801) LIL_11405 PF07377 Protein of unknown function (DUF1493) LIL_11406 PF02082 Transcriptional regulator LIL_11407 PF03992 Antibiotic biosynthesis monooxygenase LIL_11408 PF03060 Nitronate monooxygenase LIL_11410 PF04909 Amidohydrolase LIL_11414 PF04286 LIL_11414 LIL_11415 PF07568 LIL_11415 LIL_11416 PF07568 LIL_11416 LIL_11418 PF01609 Transposase DDE domain LIL_11418 PF05598 LIL_11418 LIL_11419 PF02754 LIL_11419 LIL_11419 PF13183 4Fe-4S dicluster domain LIL_11421 PF00535 Glycosyl transferase family 2 LIL_11421 PF04138 LIL_11421 LIL_11422 PF04055 Radical SAM superfamily LIL_11424 PF00990 GGDEF domain LIL_11425 PF10646 LIL_11425 LIL_11426 PF13419 Haloacid dehalogenase-like hydrolase LIL_11427 PF12544 Lysine-2,3-aminomutase LIL_11427 PF13394 4Fe-4S single cluster domain LIL_11428 PF07478 D-ala D-ala ligase C-terminus LIL_11429 PF14518 Iron-containing redox enzyme LIL_11430 PF04134 LIL_11430 LIL_11432 PF04768 Protein of unknown function (DUF619) LIL_11433 PF01170 Putative RNA methylase family UPF0020 LIL_11434 PF00210 Ferritin-like domain LIL_11435 PF00108 Thiolase, N-terminal domain LIL_11435 PF02803 Thiolase, C-terminal domain LIL_11436 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LIL_11437 PF00557 Metallopeptidase family M24 LIL_11437 PF05195 Aminopeptidase P, N-terminal domain LIL_11438 PF07600 LIL_11438 LIL_11441 PF07600 LIL_11441 LIL_11442 PF07228 Stage II sporulation protein E (SpoIIE) LIL_11442 PF07695 LIL_11442 LIL_11443 PF01546 Peptidase family M20/M25/M40 LIL_11443 PF07687 Peptidase dimerisation domain LIL_11449 PF01555 DNA methylase LIL_11451 PF00460 Flagella basal body rod protein LIL_11451 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIL_11452 PF13144 SAF-like LIL_11453 PF02107 LIL_11453 LIL_11454 PF02119 LIL_11454 LIL_11455 PF10135 LIL_11455 LIL_11456 PF03631 LIL_11456 LIL_11457 PF13489 Methyltransferase domain LIL_11458 PF08241 Methyltransferase domain LIL_11459 PF13535 ATP-grasp domain LIL_11460 PF04402 Protein of unknown function (DUF541) LIL_11461 PF00118 TCP-1/cpn60 chaperonin family LIL_11462 PF00166 Chaperonin 10 Kd subunit LIL_11465 PF06127 LIL_11465 LIL_11468 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_11469 PF13460 NADH(P)-binding LIL_11470 PF00593 TonB dependent receptor LIL_11470 PF07715 TonB-dependent Receptor Plug Domain LIL_11472 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_11472 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_11472 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_11473 PF12103 Surface lipoprotein of Spirochaetales order LIL_11474 PF02195 ParB-like nuclease domain LIL_11475 PF00438 S-adenosylmethionine synthetase, N-terminal domain LIL_11475 PF02772 S-adenosylmethionine synthetase, central domain LIL_11475 PF02773 S-adenosylmethionine synthetase, C-terminal domain LIL_11476 PF02779 Transketolase, pyrimidine binding domain LIL_11476 PF02780 Transketolase, C-terminal domain LIL_11477 PF02617 ATP-dependent Clp protease adaptor protein ClpS LIL_11478 PF08240 Alcohol dehydrogenase GroES-like domain LIL_11479 PF07598 LIL_11479 LIL_11480 PF01575 MaoC like domain LIL_11482 PF01432 Peptidase family M3 LIL_11484 PF13417 Glutathione S-transferase, N-terminal domain LIL_11485 PF00106 short chain dehydrogenase LIL_11486 PF04116 LIL_11486 LIL_11488 PF01235 LIL_11488 LIL_11488 PF02666 LIL_11488 LIL_11489 PF06155 Protein of unknown function (DUF971) LIL_11490 PF01052 Surface presentation of antigens (SPOA) LIL_11491 PF04347 LIL_11491 LIL_11492 PF00813 LIL_11492 LIL_11493 PF01313 LIL_11493 LIL_11494 PF01311 LIL_11494 LIL_11495 PF01312 FlhB HrpN YscU SpaS Family LIL_11496 PF00771 FHIPEP family LIL_11497 PF00448 SRP54-type protein, GTPase domain LIL_11498 PF13614 AAA domain LIL_11500 PF04542 Sigma-70 region 2 LIL_11500 PF04545 Sigma-70, region 4 LIL_11501 PF03961 LIL_11501 LIL_11501 PF14804 Jag N-terminus LIL_11504 PF04025 LIL_11504 LIL_11505 PF00625 Guanylate kinase LIL_11507 PF08239 Bacterial SH3 domain LIL_11510 PF02050 Flagellar FliJ protein LIL_11511 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIL_11512 PF01514 Secretory protein of YscJ/FliF family LIL_11512 PF08345 LIL_11512 LIL_11513 PF01706 FliG C-terminal domain LIL_11513 PF14841 FliG middle domain LIL_11514 PF02108 LIL_11514 LIL_11518 PF03435 Saccharopine dehydrogenase LIL_11519 PF00754 F5/8 type C domain LIL_11519 PF01551 Peptidase family M23 LIL_11520 PF03102 NeuB family LIL_11521 PF00884 Sulfatase LIL_11522 PF02421 Ferrous iron transport protein B LIL_11522 PF07664 LIL_11522 LIL_11522 PF07670 Nucleoside recognition LIL_11523 PF04023 FeoA domain LIL_11524 PF03109 LIL_11524 LIL_11527 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_11527 PF02743 Cache domain LIL_11528 PF00515 Tetratricopeptide repeat LIL_11528 PF13181 Tetratricopeptide repeat LIL_11528 PF14559 Tetratricopeptide repeat LIL_11529 PF00205 Thiamine pyrophosphate enzyme, central domain LIL_11529 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIL_11529 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LIL_11530 PF01842 ACT domain LIL_11530 PF10369 Small subunit of acetolactate synthase LIL_11532 PF13279 Thioesterase-like superfamily LIL_11534 PF04055 Radical SAM superfamily LIL_11534 PF06969 HemN C-terminal domain LIL_11535 PF00933 Glycosyl hydrolase family 3 N terminal domain LIL_11536 PF13472 GDSL-like Lipase/Acylhydrolase family LIL_11537 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIL_11537 PF05697 Bacterial trigger factor protein (TF) LIL_11537 PF05698 Bacterial trigger factor protein (TF) C-terminus LIL_11538 PF00574 Clp protease LIL_11539 PF06689 ClpX C4-type zinc finger LIL_11539 PF07724 AAA domain (Cdc48 subfamily) LIL_11539 PF10431 C-terminal, D2-small domain, of ClpB protein LIL_11541 PF00583 Acetyltransferase (GNAT) family LIL_11542 PF01384 LIL_11542 LIL_11543 PF01636 Phosphotransferase enzyme family LIL_11544 PF00076 RNA recognition motif LIL_11545 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIL_11546 PF00512 His Kinase A (phospho-acceptor) domain LIL_11546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11547 PF07228 Stage II sporulation protein E (SpoIIE) LIL_11547 PF13426 PAS domain LIL_11548 PF08245 Mur ligase middle domain LIL_11549 PF14102 LIL_11549 LIL_11551 PF00561 alpha/beta hydrolase fold LIL_11552 PF00027 Cyclic nucleotide-binding domain LIL_11553 PF00072 Response regulator receiver domain LIL_11553 PF00512 His Kinase A (phospho-acceptor) domain LIL_11553 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11553 PF13426 PAS domain LIL_11554 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11554 PF07568 LIL_11554 LIL_11554 PF08448 PAS fold LIL_11554 PF13426 PAS domain LIL_11555 PF00005 ABC transporter LIL_11555 PF12848 ABC transporter LIL_11555 PF16326 LIL_11555 LIL_11557 PF04773 FecR protein LIL_11558 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_11559 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LIL_11560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11561 PF00072 Response regulator receiver domain LIL_11561 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11561 PF07568 LIL_11561 LIL_11561 PF13426 PAS domain LIL_11562 PF11827 LIL_11562 LIL_11565 PF00072 Response regulator receiver domain LIL_11565 PF00990 GGDEF domain LIL_11566 PF05161 MOFRL family LIL_11566 PF13660 Domain of unknown function (DUF4147) LIL_11567 PF12146 Putative lysophospholipase LIL_11568 PF01527 Transposase LIL_11569 PF00665 Integrase core domain LIL_11575 PF03372 Endonuclease/Exonuclease/phosphatase family LIL_11576 PF00815 Histidinol dehydrogenase LIL_11577 PF02569 Pantoate-beta-alanine ligase LIL_11578 PF00270 DEAD/DEAH box helicase LIL_11578 PF00271 Helicase conserved C-terminal domain LIL_11578 PF02559 CarD-like/TRCF domain LIL_11578 PF03461 TRCF domain LIL_11580 PF02673 LIL_11580 LIL_11582 PF02397 LIL_11582 LIL_11582 PF13727 CoA-binding domain LIL_11583 PF02686 Glu-tRNAGln amidotransferase C subunit LIL_11584 PF01425 Amidase LIL_11585 PF00977 Histidine biosynthesis protein LIL_11586 PF07819 PGAP1-like protein LIL_11588 PF12146 Putative lysophospholipase LIL_11589 PF06537 LIL_11589 LIL_11590 PF00415 Regulator of chromosome condensation (RCC1) repeat LIL_11593 PF02371 LIL_11593 LIL_11594 PF01548 LIL_11594 LIL_11595 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIL_11597 PF03062 LIL_11597 LIL_11598 PF07600 LIL_11598 LIL_11601 PF00589 Phage integrase family LIL_11601 PF02899 Phage integrase, N-terminal SAM-like domain LIL_11602 PF13581 Histidine kinase-like ATPase domain LIL_11604 PF04993 TfoX N-terminal domain LIL_11605 PF03961 LIL_11605 LIL_11606 PF00027 Cyclic nucleotide-binding domain LIL_11606 PF13545 Crp-like helix-turn-helix domain LIL_11608 PF13181 Tetratricopeptide repeat LIL_11610 PF13690 Chemotaxis phosphatase CheX LIL_11613 PF04191 Phospholipid methyltransferase LIL_11614 PF14238 LIL_11614 LIL_11615 PF09822 LIL_11615 LIL_11616 PF12679 LIL_11616 LIL_11617 PF00005 ABC transporter LIL_11619 PF13649 Methyltransferase domain LIL_11622 PF00557 Metallopeptidase family M24 LIL_11623 PF03994 LIL_11623 LIL_11625 PF08331 LIL_11625 LIL_11625 PF13484 LIL_11625 LIL_11626 PF13855 Leucine rich repeat LIL_11627 PF00560 Leucine Rich Repeat LIL_11627 PF12799 Leucine Rich repeats (2 copies) LIL_11627 PF13855 Leucine rich repeat LIL_11628 PF13855 Leucine rich repeat LIL_11630 PF03929 LIL_11630 LIL_11631 PF00873 AcrB/AcrD/AcrF family LIL_11632 PF01327 Polypeptide deformylase LIL_11635 PF07228 Stage II sporulation protein E (SpoIIE) LIL_11635 PF13185 GAF domain LIL_11635 PF13581 Histidine kinase-like ATPase domain LIL_11636 PF01740 STAS domain LIL_11637 PF01039 Carboxyl transferase domain LIL_11638 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain LIL_11638 PF00364 Biotin-requiring enzyme LIL_11638 PF02785 Biotin carboxylase C-terminal domain LIL_11638 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIL_11639 PF07119 LIL_11639 LIL_11641 PF00072 Response regulator receiver domain LIL_11641 PF01339 CheB methylesterase LIL_11642 PF03975 CheD chemotactic sensory transduction LIL_11643 PF01584 CheW-like domain LIL_11644 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_11644 PF13426 PAS domain LIL_11645 PF01584 CheW-like domain LIL_11645 PF01627 Hpt domain LIL_11645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11645 PF02895 Signal transducing histidine kinase, homodimeric domain LIL_11646 PF13466 STAS domain LIL_11647 PF00072 Response regulator receiver domain LIL_11648 PF00072 Response regulator receiver domain LIL_11649 PF00512 His Kinase A (phospho-acceptor) domain LIL_11649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11649 PF13426 PAS domain LIL_11650 PF02401 LytB protein LIL_11651 PF07600 LIL_11651 LIL_11652 PF00669 Bacterial flagellin N-terminal helical region LIL_11652 PF00700 Bacterial flagellin C-terminal helical region LIL_11653 PF00669 Bacterial flagellin N-terminal helical region LIL_11653 PF00700 Bacterial flagellin C-terminal helical region LIL_11654 PF01923 Cobalamin adenosyltransferase LIL_11655 PF00854 POT family LIL_11656 PF00877 NlpC/P60 family LIL_11657 PF02190 ATP-dependent protease La (LON) domain LIL_11658 PF00294 pfkB family carbohydrate kinase LIL_11659 PF01467 Cytidylyltransferase LIL_11660 PF00117 Glutamine amidotransferase class-I LIL_11660 PF06418 CTP synthase N-terminus LIL_11661 PF00793 DAHP synthetase I family LIL_11662 PF06835 Lipopolysaccharide-assembly, LptC-related LIL_11663 PF03968 OstA-like protein LIL_11664 PF00005 ABC transporter LIL_11665 PF00309 LIL_11665 LIL_11665 PF04552 Sigma-54, DNA binding domain LIL_11665 PF04963 Sigma-54 factor, core binding domain LIL_11666 PF02603 HPr Serine kinase N terminus LIL_11666 PF07475 HPr Serine kinase C-terminal domain LIL_11667 PF00381 PTS HPr component phosphorylation site LIL_11668 PF00512 His Kinase A (phospho-acceptor) domain LIL_11668 PF00672 HAMP domain LIL_11668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11669 PF00072 Response regulator receiver domain LIL_11669 PF00158 Sigma-54 interaction domain LIL_11669 PF02954 Bacterial regulatory protein, Fis family LIL_11671 PF04851 Type III restriction enzyme, res subunit LIL_11672 PF00551 Formyl transferase LIL_11672 PF02911 Formyl transferase, C-terminal domain LIL_11673 PF03793 PASTA domain LIL_11674 PF00834 Ribulose-phosphate 3 epimerase family LIL_11675 PF00886 Ribosomal protein S16 LIL_11676 PF13083 KH domain LIL_11677 PF01782 RimM N-terminal domain LIL_11677 PF05239 PRC-barrel domain LIL_11678 PF01746 tRNA (Guanine-1)-methyltransferase LIL_11679 PF01245 Ribosomal protein L19 LIL_11680 PF01351 Ribonuclease HII LIL_11682 PF01312 FlhB HrpN YscU SpaS Family LIL_11683 PF11871 LIL_11683 LIL_11683 PF13487 HD domain LIL_11684 PF02021 Uncharacterised protein family UPF0102 LIL_11686 PF01078 Magnesium chelatase, subunit ChlI LIL_11686 PF13335 LIL_11686 LIL_11686 PF13541 Subunit ChlI of Mg-chelatase LIL_11688 PF01476 LysM domain LIL_11688 PF01551 Peptidase family M23 LIL_11690 PF00263 LIL_11690 LIL_11690 PF03958 Bacterial type II/III secretion system short domain LIL_11691 PF00437 Type II/IV secretion system protein LIL_11691 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LIL_11692 PF00482 Type II secretion system (T2SS), protein F LIL_11693 PF07963 Prokaryotic N-terminal methylation motif LIL_11693 PF08334 Type II secretion system (T2SS), protein G LIL_11694 PF07963 Prokaryotic N-terminal methylation motif LIL_11696 PF07963 Prokaryotic N-terminal methylation motif LIL_11696 PF11612 Type II secretion system (T2SS), protein J LIL_11697 PF03934 Type II secretion system (T2SS), protein K LIL_11698 PF14450 Cell division protein FtsA LIL_11704 PF00440 Bacterial regulatory proteins, tetR family LIL_11705 PF01361 Tautomerase enzyme LIL_11706 PF08240 Alcohol dehydrogenase GroES-like domain LIL_11707 PF02867 Ribonucleotide reductase, barrel domain LIL_11707 PF08471 LIL_11707 LIL_11709 PF02609 Exonuclease VII small subunit LIL_11710 PF02601 LIL_11710 LIL_11710 PF13742 LIL_11710 LIL_11711 PF01594 LIL_11711 LIL_11713 PF09335 LIL_11713 LIL_11715 PF01713 Smr domain LIL_11716 PF00682 HMGL-like LIL_11716 PF08502 LeuA allosteric (dimerisation) domain LIL_11717 PF01195 Peptidyl-tRNA hydrolase LIL_11718 PF00589 Phage integrase family LIL_11718 PF02899 Phage integrase, N-terminal SAM-like domain LIL_11719 PF00227 Proteasome subunit LIL_11720 PF07724 AAA domain (Cdc48 subfamily) LIL_11720 PF07728 AAA domain (dynein-related subfamily) LIL_11720 PF10431 C-terminal, D2-small domain, of ClpB protein LIL_11721 PF07995 Glucose / Sorbosone dehydrogenase LIL_11724 PF00364 Biotin-requiring enzyme LIL_11725 PF00149 Calcineurin-like phosphoesterase LIL_11726 PF01883 Domain of unknown function DUF59 LIL_11726 PF10609 ParA/MinD ATPase like LIL_11728 PF02441 Flavoprotein LIL_11729 PF01040 UbiA prenyltransferase family LIL_11732 PF01926 50S ribosome-binding GTPase LIL_11732 PF06071 Protein of unknown function (DUF933) LIL_11733 PF00730 HhH-GPD superfamily base excision DNA repair protein LIL_11734 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LIL_11735 PF01370 NAD dependent epimerase/dehydratase family LIL_11736 PF01022 Bacterial regulatory protein, arsR family LIL_11737 PF00106 short chain dehydrogenase LIL_11740 PF02463 RecF/RecN/SMC N terminal domain LIL_11741 PF01618 LIL_11741 LIL_11742 PF02472 Biopolymer transport protein ExbD/TolR LIL_11743 PF01103 Surface antigen LIL_11743 PF07244 Surface antigen variable number repeat LIL_11744 PF00580 UvrD/REP helicase N-terminal domain LIL_11744 PF13361 UvrD-like helicase C-terminal domain LIL_11746 PF00459 Inositol monophosphatase family LIL_11747 PF00534 Glycosyl transferases group 1 LIL_11747 PF13439 Glycosyltransferase Family 4 LIL_11749 PF00578 AhpC/TSA family LIL_11750 PF00501 AMP-binding enzyme LIL_11752 PF00391 PEP-utilising enzyme, mobile domain LIL_11752 PF02896 PEP-utilising enzyme, TIM barrel domain LIL_11752 PF05524 PEP-utilising enzyme, N-terminal LIL_11753 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LIL_11754 PF00106 short chain dehydrogenase LIL_11755 PF01987 Mitochondrial biogenesis AIM24 LIL_11756 PF01987 Mitochondrial biogenesis AIM24 LIL_11757 PF01987 Mitochondrial biogenesis AIM24 LIL_11759 PF08713 DNA alkylation repair enzyme LIL_11762 PF07995 Glucose / Sorbosone dehydrogenase LIL_11763 PF04773 FecR protein LIL_11764 PF02371 LIL_11764 LIL_11765 PF01548 LIL_11765 LIL_11769 PF04055 Radical SAM superfamily LIL_11770 PF00849 RNA pseudouridylate synthase LIL_11770 PF01479 S4 domain LIL_11771 PF03062 LIL_11771 LIL_11772 PF07611 LIL_11772 LIL_11774 PF00923 Transaldolase LIL_11777 PF01808 AICARFT/IMPCHase bienzyme LIL_11777 PF02142 MGS-like domain LIL_11778 PF00551 Formyl transferase LIL_11779 PF02561 Flagellar protein FliS LIL_11783 PF01844 HNH endonuclease LIL_11784 PF09335 LIL_11784 LIL_11785 PF01966 HD domain LIL_11785 PF13286 Phosphohydrolase-associated domain LIL_11788 PF00266 Aminotransferase class-V LIL_11790 PF13431 Tetratricopeptide repeat LIL_11790 PF13432 Tetratricopeptide repeat LIL_11790 PF14559 Tetratricopeptide repeat LIL_11792 PF00378 Enoyl-CoA hydratase/isomerase family LIL_11793 PF12796 Ankyrin repeats (3 copies) LIL_11793 PF13637 Ankyrin repeats (many copies) LIL_11794 PF01565 FAD binding domain LIL_11794 PF02913 FAD linked oxidases, C-terminal domain LIL_11795 PF01266 FAD dependent oxidoreductase LIL_11795 PF16901 LIL_11795 LIL_11796 PF00440 Bacterial regulatory proteins, tetR family LIL_11797 PF06127 LIL_11797 LIL_11799 PF05991 LIL_11799 LIL_11800 PF03062 LIL_11800 LIL_11801 PF07611 LIL_11801 LIL_11803 PF02146 Sir2 family LIL_11804 PF01965 DJ-1/PfpI family LIL_11806 PF02265 S1/P1 Nuclease LIL_11808 PF00202 Aminotransferase class-III LIL_11808 PF02348 Cytidylyltransferase LIL_11810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_11812 PF10604 Polyketide cyclase / dehydrase and lipid transport LIL_11814 PF00593 TonB dependent receptor LIL_11814 PF07715 TonB-dependent Receptor Plug Domain LIL_11817 PF01522 Polysaccharide deacetylase LIL_11818 PF00579 tRNA synthetases class I (W and Y) LIL_11819 PF01266 FAD dependent oxidoreductase LIL_11819 PF16901 LIL_11819 LIL_11821 PF00140 Sigma-70 factor, region 1 LIL_11821 PF03979 Sigma-70 factor, region 1 LIL_11821 PF04539 Sigma-70 region 3 LIL_11821 PF04542 Sigma-70 region 2 LIL_11821 PF04545 Sigma-70, region 4 LIL_11822 PF01807 CHC2 zinc finger LIL_11822 PF08275 DNA primase catalytic core, N-terminal domain LIL_11822 PF13662 Toprim domain LIL_11823 PF09424 Yqey-like protein LIL_11824 PF01165 Ribosomal protein S21 LIL_11828 PF00316 Fructose-1-6-bisphosphatase LIL_11830 PF00072 Response regulator receiver domain LIL_11830 PF00512 His Kinase A (phospho-acceptor) domain LIL_11830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11831 PF00072 Response regulator receiver domain LIL_11831 PF00512 His Kinase A (phospho-acceptor) domain LIL_11831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_11832 PF01609 Transposase DDE domain LIL_11832 PF05598 LIL_11832 LIL_11833 PF00122 E1-E2 ATPase LIL_11833 PF00689 Cation transporting ATPase, C-terminus LIL_11833 PF00690 Cation transporter/ATPase, N-terminus LIL_11833 PF00702 haloacid dehalogenase-like hydrolase LIL_11835 PF00571 CBS domain LIL_11835 PF01769 Divalent cation transporter LIL_11835 PF03448 MgtE intracellular N domain LIL_11836 PF00691 OmpA family LIL_11837 PF01545 Cation efflux family LIL_11839 PF00005 ABC transporter LIL_11840 PF01343 Peptidase family S49 LIL_11841 PF01527 Transposase LIL_11842 PF00665 Integrase core domain LIL_11843 PF01300 Telomere recombination LIL_11843 PF03481 Putative GTP-binding controlling metal-binding LIL_11844 PF00704 Glycosyl hydrolases family 18 LIL_11845 PF02592 LIL_11845 LIL_11850 PF00682 HMGL-like LIL_11850 PF08502 LeuA allosteric (dimerisation) domain LIL_11851 PF01510 N-acetylmuramoyl-L-alanine amidase LIL_11852 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LIL_11852 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIL_11853 PF07228 Stage II sporulation protein E (SpoIIE) LIL_11853 PF07695 LIL_11853 LIL_11855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIL_11856 PF00580 UvrD/REP helicase N-terminal domain LIL_11856 PF13361 UvrD-like helicase C-terminal domain LIL_11857 PF10263 LIL_11857 LIL_11859 PF02558 Ketopantoate reductase PanE/ApbA LIL_11859 PF08546 Ketopantoate reductase PanE/ApbA C terminal LIL_11861 PF00004 ATPase family associated with various cellular activities (AAA) LIL_11862 PF00905 Penicillin binding protein transpeptidase domain LIL_11862 PF00912 Transglycosylase LIL_11862 PF06832 LIL_11862 LIL_11863 PF00207 Alpha-2-macroglobulin family LIL_11863 PF01835 MG2 domain LIL_11863 PF07703 Alpha-2-macroglobulin family N-terminal region LIL_11863 PF11974 Alpha-2-macroglobulin MG1 domain LIL_11864 PF01523 Putative modulator of DNA gyrase LIL_11865 PF01523 Putative modulator of DNA gyrase LIL_11869 PF00154 recA bacterial DNA recombination protein LIL_11870 PF01118 Semialdehyde dehydrogenase, NAD binding domain LIL_11870 PF02774 Semialdehyde dehydrogenase, dimerisation domain LIL_11871 PF00501 AMP-binding enzyme LIL_11873 PF00027 Cyclic nucleotide-binding domain LIL_11873 PF01734 Patatin-like phospholipase LIL_11874 PF14063 LIL_11874 LIL_11875 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LIL_11876 PF00534 Glycosyl transferases group 1 LIL_11876 PF13439 Glycosyltransferase Family 4 LIL_11877 PF04932 LIL_11877 LIL_11878 PF13091 PLD-like domain LIL_11881 PF01541 GIY-YIG catalytic domain LIL_11881 PF02151 UvrB/uvrC motif LIL_11881 PF08459 UvrC Helix-hairpin-helix N-terminal LIL_11881 PF12826 Helix-hairpin-helix motif LIL_11882 PF00472 RF-1 domain LIL_11883 PF03061 Thioesterase superfamily LIL_11884 PF00633 Helix-hairpin-helix motif LIL_11884 PF00730 HhH-GPD superfamily base excision DNA repair protein LIL_11888 PF00155 Aminotransferase class I and II LIL_11890 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LIL_11890 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LIL_11890 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LIL_11891 PF00202 Aminotransferase class-III LIL_11892 PF00180 Isocitrate/isopropylmalate dehydrogenase LIL_11893 PF00072 Response regulator receiver domain LIL_11894 PF02578 Multi-copper polyphenol oxidoreductase laccase LIL_11897 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LIL_11898 PF00488 MutS domain V LIL_11898 PF01624 MutS domain I LIL_11898 PF05188 MutS domain II LIL_11898 PF05190 MutS family domain IV LIL_11898 PF05192 MutS domain III LIL_11899 PF12710 haloacid dehalogenase-like hydrolase LIL_11900 PF13472 GDSL-like Lipase/Acylhydrolase family LIL_11902 PF04055 Radical SAM superfamily LIL_11902 PF06968 Biotin and Thiamin Synthesis associated domain LIL_11903 PF00202 Aminotransferase class-III LIL_11904 PF13500 AAA domain LIL_11905 PF00155 Aminotransferase class I and II LIL_11906 PF00056 lactate/malate dehydrogenase, NAD binding domain LIL_11906 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LIL_11907 PF13462 Thioredoxin LIL_11911 PF00288 GHMP kinases N terminal domain LIL_11912 PF00474 Sodium:solute symporter family LIL_11913 PF00561 alpha/beta hydrolase fold LIL_11915 PF00155 Aminotransferase class I and II LIL_11916 PF04851 Type III restriction enzyme, res subunit LIL_11916 PF13625 LIL_11916 LIL_11916 PF16203 LIL_11916 LIL_11918 PF01263 Aldose 1-epimerase LIL_11919 PF01343 Peptidase family S49 LIL_11920 PF03062 LIL_11920 LIL_11922 PF07228 Stage II sporulation protein E (SpoIIE) LIL_11925 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LIL_11925 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LIL_11926 PF12706 Beta-lactamase superfamily domain LIL_11927 PF01740 STAS domain LIL_11928 PF00753 Metallo-beta-lactamase superfamily LIL_11928 PF16123 LIL_11928 LIL_11929 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIL_11929 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIL_11930 PF00005 ABC transporter LIL_11931 PF01061 LIL_11931 LIL_11932 PF01722 BolA-like protein LIL_11933 PF01722 BolA-like protein LIL_11934 PF00462 Glutaredoxin LIL_11935 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LIL_11935 PF08443 RimK-like ATP-grasp domain LIL_11936 PF04262 Glutamate-cysteine ligase LIL_11937 PF01019 Gamma-glutamyltranspeptidase LIL_11938 PF00004 ATPase family associated with various cellular activities (AAA) LIL_11938 PF02861 Clp amino terminal domain LIL_11938 PF07724 AAA domain (Cdc48 subfamily) LIL_11938 PF10431 C-terminal, D2-small domain, of ClpB protein LIL_11939 PF02617 ATP-dependent Clp protease adaptor protein ClpS LIL_11940 PF04339 LIL_11940 LIL_11941 PF04542 Sigma-70 region 2 LIL_11941 PF04545 Sigma-70, region 4 LIL_11942 PF06532 LIL_11942 LIL_11943 PF13086 AAA domain LIL_11943 PF13087 AAA domain LIL_11944 PF00291 Pyridoxal-phosphate dependent enzyme LIL_11945 PF00694 Aconitase C-terminal domain LIL_11946 PF00330 Aconitase family (aconitate hydratase) LIL_11947 PF00498 FHA domain LIL_11948 PF00005 ABC transporter LIL_11949 PF13580 SIS domain LIL_11951 PF00535 Glycosyl transferase family 2 LIL_11952 PF04932 LIL_11952 LIL_11953 PF14956 LIL_11953 LIL_11954 PF00117 Glutamine amidotransferase class-I LIL_11954 PF00958 GMP synthase C terminal domain LIL_11954 PF02540 NAD synthase LIL_11955 PF14489 QueF-like protein LIL_11956 PF03083 Sugar efflux transporter for intercellular exchange LIL_11957 PF04773 FecR protein LIL_11958 PF13459 4Fe-4S single cluster domain LIL_11959 PF01052 Surface presentation of antigens (SPOA) LIL_11959 PF02154 Flagellar motor switch protein FliM LIL_11962 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LIL_11963 PF00206 Lyase LIL_11963 PF14698 Argininosuccinate lyase C-terminal LIL_11964 PF14376 LIL_11964 LIL_11965 PF01957 NfeD-like C-terminal, partner-binding LIL_11966 PF01145 SPFH domain / Band 7 family LIL_11966 PF16200 LIL_11966 LIL_11967 PF01145 SPFH domain / Band 7 family LIL_11967 PF16200 LIL_11967 LIL_11968 PF01609 Transposase DDE domain LIL_11968 PF05598 LIL_11968 LIL_11969 PF01052 Surface presentation of antigens (SPOA) LIL_11970 PF00004 ATPase family associated with various cellular activities (AAA) LIL_11973 PF04452 RNA methyltransferase LIL_11975 PF01053 Cys/Met metabolism PLP-dependent enzyme LIL_11976 PF00561 alpha/beta hydrolase fold LIL_11977 PF07021 Methionine biosynthesis protein MetW LIL_11978 PF01820 D-ala D-ala ligase N-terminus LIL_11978 PF07478 D-ala D-ala ligase C-terminus LIL_11980 PF02405 LIL_11980 LIL_11981 PF00005 ABC transporter LIL_11982 PF02470 LIL_11982 LIL_11983 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LIL_11984 PF14345 LIL_11984 LIL_11985 PF09925 LIL_11985 LIL_11986 PF01225 Mur ligase family, catalytic domain LIL_11986 PF02875 Mur ligase family, glutamate ligase domain LIL_11986 PF08245 Mur ligase middle domain LIL_11987 PF03033 Glycosyltransferase family 28 N-terminal domain LIL_11987 PF04101 Glycosyltransferase family 28 C-terminal domain LIL_11988 PF01098 LIL_11988 LIL_11989 PF00953 Glycosyl transferase family 4 LIL_11989 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LIL_11990 PF02875 Mur ligase family, glutamate ligase domain LIL_11990 PF08245 Mur ligase middle domain LIL_11992 PF01795 MraW methylase family LIL_11993 PF01230 HIT domain LIL_11994 PF01739 CheR methyltransferase, SAM binding domain LIL_11994 PF03705 CheR methyltransferase, all-alpha domain LIL_11996 PF02621 Menaquinone biosynthesis LIL_11998 PF00561 alpha/beta hydrolase fold LIL_12002 PF07600 LIL_12002 LIL_12003 PF09365 LIL_12003 LIL_12004 PF01435 Peptidase family M48 LIL_12005 PF01145 SPFH domain / Band 7 family LIL_12006 PF10977 LIL_12006 LIL_12008 PF07075 Protein of unknown function (DUF1343) LIL_12010 PF00034 Cytochrome c LIL_12013 PF00669 Bacterial flagellin N-terminal helical region LIL_12013 PF00700 Bacterial flagellin C-terminal helical region LIL_12014 PF00669 Bacterial flagellin N-terminal helical region LIL_12014 PF00700 Bacterial flagellin C-terminal helical region LIL_12016 PF06123 LIL_12016 LIL_12018 PF00512 His Kinase A (phospho-acceptor) domain LIL_12018 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12019 PF00072 Response regulator receiver domain LIL_12019 PF00486 Transcriptional regulatory protein, C terminal LIL_12020 PF00676 Dehydrogenase E1 component LIL_12021 PF02779 Transketolase, pyrimidine binding domain LIL_12021 PF02780 Transketolase, C-terminal domain LIL_12022 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LIL_12022 PF00364 Biotin-requiring enzyme LIL_12022 PF02817 e3 binding domain LIL_12023 PF01706 FliG C-terminal domain LIL_12023 PF14841 FliG middle domain LIL_12023 PF14842 FliG N-terminal domain LIL_12025 PF13205 Bacterial Ig-like domain LIL_12027 PF01066 CDP-alcohol phosphatidyltransferase LIL_12028 PF09351 Domain of unknown function (DUF1993) LIL_12029 PF01522 Polysaccharide deacetylase LIL_12030 PF13632 Glycosyl transferase family group 2 LIL_12032 PF00152 tRNA synthetases class II (D, K and N) LIL_12032 PF01336 OB-fold nucleic acid binding domain LIL_12035 PF03808 LIL_12035 LIL_12036 PF02581 Thiamine monophosphate synthase/TENI LIL_12038 PF04452 RNA methyltransferase LIL_12039 PF17131 LIL_12039 LIL_12040 PF00478 IMP dehydrogenase / GMP reductase domain LIL_12040 PF00571 CBS domain LIL_12041 PF07614 LIL_12041 LIL_12042 PF00563 EAL domain LIL_12042 PF10388 EAL-domain associated signalling protein domain LIL_12044 PF04932 LIL_12044 LIL_12047 PF00535 Glycosyl transferase family 2 LIL_12048 PF13231 LIL_12048 LIL_12049 PF01565 FAD binding domain LIL_12050 PF00106 short chain dehydrogenase LIL_12051 PF04376 LIL_12051 LIL_12051 PF04377 LIL_12051 LIL_12053 PF13456 Reverse transcriptase-like LIL_12055 PF01743 Poly A polymerase head domain LIL_12055 PF12627 Probable RNA and SrmB- binding site of polymerase A LIL_12056 PF07642 LIL_12056 LIL_12058 PF00873 AcrB/AcrD/AcrF family LIL_12059 PF00873 AcrB/AcrD/AcrF family LIL_12061 PF16576 LIL_12061 LIL_12062 PF02321 Outer membrane efflux protein LIL_12065 PF01043 SecA preprotein cross-linking domain LIL_12065 PF07516 SecA Wing and Scaffold domain LIL_12065 PF07517 SecA DEAD-like domain LIL_12066 PF00117 Glutamine amidotransferase class-I LIL_12067 PF00578 AhpC/TSA family LIL_12069 PF14385 LIL_12069 LIL_12070 PF00561 alpha/beta hydrolase fold LIL_12072 PF00574 Clp protease LIL_12073 PF04977 Septum formation initiator LIL_12075 PF00113 Enolase, C-terminal TIM barrel domain LIL_12075 PF03952 Enolase, N-terminal domain LIL_12077 PF01973 LIL_12077 LIL_12078 PF00072 Response regulator receiver domain LIL_12079 PF13646 HEAT repeats LIL_12089 PF07600 LIL_12089 LIL_12090 PF00561 alpha/beta hydrolase fold LIL_12091 PF02151 UvrB/uvrC motif LIL_12091 PF02577 Bifunctional nuclease LIL_12093 PF07690 Major Facilitator Superfamily LIL_12096 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_12096 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_12096 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_12097 PF00027 Cyclic nucleotide-binding domain LIL_12097 PF00753 Metallo-beta-lactamase superfamily LIL_12098 PF00085 Thioredoxin LIL_12100 PF02416 mttA/Hcf106 family LIL_12101 PF00902 Sec-independent protein translocase protein (TatC) LIL_12103 PF02493 MORN repeat LIL_12104 PF00076 RNA recognition motif LIL_12105 PF00486 Transcriptional regulatory protein, C terminal LIL_12105 PF03704 Bacterial transcriptional activator domain LIL_12105 PF07695 LIL_12105 LIL_12108 PF16561 LIL_12108 LIL_12109 PF00515 Tetratricopeptide repeat LIL_12109 PF13181 Tetratricopeptide repeat LIL_12111 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIL_12111 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIL_12113 PF03061 Thioesterase superfamily LIL_12117 PF00561 alpha/beta hydrolase fold LIL_12118 PF03745 Domain of unknown function (DUF309) LIL_12119 PF00248 Aldo/keto reductase family LIL_12120 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LIL_12121 PF00890 FAD binding domain LIL_12121 PF02910 Fumarate reductase flavoprotein C-term LIL_12122 PF13085 2Fe-2S iron-sulfur cluster binding domain LIL_12122 PF13183 4Fe-4S dicluster domain LIL_12124 PF14300 Domain of unknown function (DUF4375) LIL_12127 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_12129 PF00009 Elongation factor Tu GTP binding domain LIL_12129 PF00679 Elongation factor G C-terminus LIL_12129 PF03144 Elongation factor Tu domain 2 LIL_12129 PF06421 GTP-binding protein LepA C-terminus LIL_12131 PF01740 STAS domain LIL_12135 PF01381 Helix-turn-helix LIL_12136 PF00004 ATPase family associated with various cellular activities (AAA) LIL_12136 PF02861 Clp amino terminal domain LIL_12136 PF07724 AAA domain (Cdc48 subfamily) LIL_12136 PF10431 C-terminal, D2-small domain, of ClpB protein LIL_12137 PF00209 Sodium:neurotransmitter symporter family LIL_12138 PF06733 DEAD_2 LIL_12138 PF13307 Helicase C-terminal domain LIL_12140 PF07600 LIL_12140 LIL_12141 PF06674 LIL_12141 LIL_12145 PF00152 tRNA synthetases class II (D, K and N) LIL_12145 PF01336 OB-fold nucleic acid binding domain LIL_12146 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LIL_12146 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LIL_12147 PF05448 Acetyl xylan esterase (AXE1) LIL_12148 PF01406 tRNA synthetases class I (C) catalytic domain LIL_12148 PF09190 DALR domain LIL_12149 PF00588 SpoU rRNA Methylase family LIL_12149 PF08032 RNA 2'-O ribose methyltransferase substrate binding LIL_12150 PF07819 PGAP1-like protein LIL_12151 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12151 PF08447 PAS fold LIL_12151 PF08448 PAS fold LIL_12152 PF00199 Catalase LIL_12152 PF06628 Catalase-related immune-responsive LIL_12153 PF12796 Ankyrin repeats (3 copies) LIL_12154 PF01475 Ferric uptake regulator family LIL_12156 PF00460 Flagella basal body rod protein LIL_12156 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIL_12157 PF12762 LIL_12157 LIL_12164 PF06067 LIL_12164 LIL_12170 PF00665 Integrase core domain LIL_12171 PF01527 Transposase LIL_12172 PF00589 Phage integrase family LIL_12174 PF06983 3-demethylubiquinone-9 3-methyltransferase LIL_12175 PF10137 LIL_12175 LIL_12178 PF03534 Salmonella virulence plasmid 65kDa B protein LIL_12178 PF05593 LIL_12178 LIL_12184 PF13643 LIL_12184 LIL_12186 PF14022 LIL_12186 LIL_12187 PF01527 Transposase LIL_12189 PF13333 LIL_12189 LIL_12190 PF00072 Response regulator receiver domain LIL_12190 PF00512 His Kinase A (phospho-acceptor) domain LIL_12190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12191 PF00072 Response regulator receiver domain LIL_12191 PF00512 His Kinase A (phospho-acceptor) domain LIL_12191 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12191 PF12729 LIL_12191 LIL_12191 PF13185 GAF domain LIL_12192 PF01339 CheB methylesterase LIL_12193 PF01739 CheR methyltransferase, SAM binding domain LIL_12193 PF03705 CheR methyltransferase, all-alpha domain LIL_12194 PF01553 Acyltransferase LIL_12195 PF01734 Patatin-like phospholipase LIL_12197 PF12802 MarR family LIL_12199 PF02594 Uncharacterised ACR, YggU family COG1872 LIL_12200 PF03023 LIL_12200 LIL_12201 PF01740 STAS domain LIL_12204 PF13274 LIL_12204 LIL_12205 PF02261 Aspartate decarboxylase LIL_12209 PF08668 HDOD domain LIL_12210 PF00005 ABC transporter LIL_12211 PF01131 DNA topoisomerase LIL_12211 PF01396 LIL_12211 LIL_12211 PF01751 Toprim domain LIL_12213 PF00291 Pyridoxal-phosphate dependent enzyme LIL_12216 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_12217 PF00717 Peptidase S24-like LIL_12218 PF00512 His Kinase A (phospho-acceptor) domain LIL_12218 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12218 PF13426 PAS domain LIL_12219 PF00072 Response regulator receiver domain LIL_12220 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LIL_12220 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LIL_12221 PF00162 Phosphoglycerate kinase LIL_12226 PF00121 Triosephosphate isomerase LIL_12227 PF03840 Preprotein translocase SecG subunit LIL_12229 PF00512 His Kinase A (phospho-acceptor) domain LIL_12229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12230 PF00072 Response regulator receiver domain LIL_12231 PF06739 LIL_12231 LIL_12233 PF00994 Probable molybdopterin binding domain LIL_12233 PF02464 Competence-damaged protein LIL_12234 PF00750 tRNA synthetases class I (R) LIL_12234 PF03485 Arginyl tRNA synthetase N terminal domain LIL_12234 PF05746 DALR anticodon binding domain LIL_12237 PF02565 Recombination protein O C terminal LIL_12237 PF11967 Recombination protein O N terminal LIL_12238 PF02130 Uncharacterized protein family UPF0054 LIL_12239 PF01966 HD domain LIL_12239 PF07697 LIL_12239 LIL_12239 PF07698 LIL_12239 LIL_12240 PF02562 PhoH-like protein LIL_12241 PF01609 Transposase DDE domain LIL_12241 PF05598 LIL_12241 LIL_12242 PF00152 tRNA synthetases class II (D, K and N) LIL_12242 PF01336 OB-fold nucleic acid binding domain LIL_12242 PF02938 GAD domain LIL_12243 PF00772 DnaB-like helicase N terminal domain LIL_12243 PF03796 DnaB-like helicase C terminal domain LIL_12244 PF01281 Ribosomal protein L9, N-terminal domain LIL_12244 PF03948 Ribosomal protein L9, C-terminal domain LIL_12245 PF01084 Ribosomal protein S18 LIL_12246 PF00436 Single-strand binding protein family LIL_12247 PF01250 Ribosomal protein S6 LIL_12248 PF09587 Bacterial capsule synthesis protein PGA_cap LIL_12249 PF12796 Ankyrin repeats (3 copies) LIL_12252 PF00939 Sodium:sulfate symporter transmembrane region LIL_12253 PF00535 Glycosyl transferase family 2 LIL_12255 PF00535 Glycosyl transferase family 2 LIL_12256 PF00535 Glycosyl transferase family 2 LIL_12257 PF00483 Nucleotidyl transferase LIL_12258 PF16363 LIL_12258 LIL_12259 PF04321 RmlD substrate binding domain LIL_12260 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LIL_12261 PF00535 Glycosyl transferase family 2 LIL_12262 PF00535 Glycosyl transferase family 2 LIL_12263 PF00535 Glycosyl transferase family 2 LIL_12264 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_12265 PF05523 WxcM-like, C-terminal LIL_12268 PF00535 Glycosyl transferase family 2 LIL_12269 PF13440 LIL_12269 LIL_12269 PF14667 Polysaccharide biosynthesis C-terminal domain LIL_12270 PF06797 LIL_12270 LIL_12271 PF02397 LIL_12271 LIL_12272 PF00534 Glycosyl transferases group 1 LIL_12273 PF02350 UDP-N-acetylglucosamine 2-epimerase LIL_12274 PF01370 NAD dependent epimerase/dehydratase family LIL_12275 PF02719 Polysaccharide biosynthesis protein LIL_12275 PF08485 Polysaccharide biosynthesis protein C-terminal LIL_12276 PF00534 Glycosyl transferases group 1 LIL_12278 PF07220 LIL_12278 LIL_12279 PF13489 Methyltransferase domain LIL_12280 PF00535 Glycosyl transferase family 2 LIL_12281 PF08282 haloacid dehalogenase-like hydrolase LIL_12283 PF02348 Cytidylyltransferase LIL_12284 PF13561 Enoyl-(Acyl carrier protein) reductase LIL_12285 PF05721 Phytanoyl-CoA dioxygenase (PhyH) LIL_12286 PF13489 Methyltransferase domain LIL_12287 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_12287 PF14602 Hexapeptide repeat of succinyl-transferase LIL_12288 PF13561 Enoyl-(Acyl carrier protein) reductase LIL_12289 PF03328 HpcH/HpaI aldolase/citrate lyase family LIL_12290 PF00571 CBS domain LIL_12291 PF00793 DAHP synthetase I family LIL_12293 PF13649 Methyltransferase domain LIL_12295 PF03102 NeuB family LIL_12295 PF08666 SAF domain LIL_12296 PF00551 Formyl transferase LIL_12296 PF02911 Formyl transferase, C-terminal domain LIL_12297 PF04101 Glycosyltransferase family 28 C-terminal domain LIL_12298 PF00795 Carbon-nitrogen hydrolase LIL_12299 PF00202 Aminotransferase class-III LIL_12300 PF02348 Cytidylyltransferase LIL_12301 PF03102 NeuB family LIL_12301 PF08666 SAF domain LIL_12302 PF00248 Aldo/keto reductase family LIL_12303 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_12304 PF04321 RmlD substrate binding domain LIL_12305 PF00005 ABC transporter LIL_12305 PF00664 ABC transporter transmembrane region LIL_12309 PF13489 Methyltransferase domain LIL_12310 PF13561 Enoyl-(Acyl carrier protein) reductase LIL_12311 PF08421 Putative zinc binding domain LIL_12311 PF08484 C-methyltransferase C-terminal domain LIL_12311 PF13489 Methyltransferase domain LIL_12313 PF13847 Methyltransferase domain LIL_12314 PF00293 NUDIX domain LIL_12317 PF02779 Transketolase, pyrimidine binding domain LIL_12317 PF02780 Transketolase, C-terminal domain LIL_12318 PF00456 Transketolase, thiamine diphosphate binding domain LIL_12319 PF01636 Phosphotransferase enzyme family LIL_12320 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_12321 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_12322 PF01370 NAD dependent epimerase/dehydratase family LIL_12323 PF00294 pfkB family carbohydrate kinase LIL_12323 PF01467 Cytidylyltransferase LIL_12324 PF00483 Nucleotidyl transferase LIL_12325 PF01370 NAD dependent epimerase/dehydratase family LIL_12326 PF13580 SIS domain LIL_12327 PF01266 FAD dependent oxidoreductase LIL_12328 PF01370 NAD dependent epimerase/dehydratase family LIL_12329 PF13412 Winged helix-turn-helix DNA-binding LIL_12333 PF06739 LIL_12333 LIL_12334 PF06739 LIL_12334 LIL_12336 PF00011 Hsp20/alpha crystallin family LIL_12337 PF00011 Hsp20/alpha crystallin family LIL_12338 PF04342 LIL_12338 LIL_12340 PF10127 LIL_12340 LIL_12341 PF02630 SCO1/SenC LIL_12342 PF07731 Multicopper oxidase LIL_12342 PF07732 Multicopper oxidase LIL_12343 PF13396 LIL_12343 LIL_12344 PF13229 Right handed beta helix region LIL_12345 PF07568 LIL_12345 LIL_12347 PF00905 Penicillin binding protein transpeptidase domain LIL_12348 PF00999 Sodium/hydrogen exchanger family LIL_12349 PF01555 DNA methylase LIL_12350 PF14340 LIL_12350 LIL_12351 PF00873 AcrB/AcrD/AcrF family LIL_12352 PF13387 LIL_12352 LIL_12353 PF12146 Putative lysophospholipase LIL_12354 PF11220 LIL_12354 LIL_12355 PF11220 LIL_12355 LIL_12359 PF02511 Thymidylate synthase complementing protein LIL_12360 PF01791 DeoC/LacD family aldolase LIL_12361 PF13855 Leucine rich repeat LIL_12363 PF00072 Response regulator receiver domain LIL_12363 PF00512 His Kinase A (phospho-acceptor) domain LIL_12363 PF00989 PAS fold LIL_12364 PF00571 CBS domain LIL_12368 PF01584 CheW-like domain LIL_12371 PF00483 Nucleotidyl transferase LIL_12373 PF17209 LIL_12373 LIL_12374 PF01715 IPP transferase LIL_12375 PF09538 LIL_12375 LIL_12376 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LIL_12378 PF00595 PDZ domain (Also known as DHR or GLGF) LIL_12378 PF03572 Peptidase family S41 LIL_12379 PF00890 FAD binding domain LIL_12379 PF02910 Fumarate reductase flavoprotein C-term LIL_12380 PF01103 Surface antigen LIL_12381 PF07603 LIL_12381 LIL_12382 PF01103 Surface antigen LIL_12384 PF01551 Peptidase family M23 LIL_12385 PF00583 Acetyltransferase (GNAT) family LIL_12386 PF01609 Transposase DDE domain LIL_12386 PF05598 LIL_12386 LIL_12387 PF01103 Surface antigen LIL_12388 PF01839 FG-GAP repeat LIL_12388 PF13205 Bacterial Ig-like domain LIL_12388 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella LIL_12390 PF09346 SMI1 / KNR4 family (SUKH-1) LIL_12394 PF01551 Peptidase family M23 LIL_12395 PF03553 LIL_12395 LIL_12396 PF00849 RNA pseudouridylate synthase LIL_12397 PF07238 PilZ domain LIL_12398 PF01070 FMN-dependent dehydrogenase LIL_12398 PF13535 ATP-grasp domain LIL_12399 PF03054 tRNA methyl transferase LIL_12402 PF00990 GGDEF domain LIL_12402 PF13185 GAF domain LIL_12403 PF03807 NADP oxidoreductase coenzyme F420-dependent LIL_12403 PF14748 Pyrroline-5-carboxylate reductase dimerisation LIL_12404 PF01168 Alanine racemase, N-terminal domain LIL_12406 PF04620 LIL_12406 LIL_12408 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LIL_12410 PF07600 LIL_12410 LIL_12412 PF03030 Inorganic H+ pyrophosphatase LIL_12414 PF13146 LIL_12414 LIL_12415 PF13146 LIL_12415 LIL_12416 PF13146 LIL_12416 LIL_12417 PF00128 Alpha amylase, catalytic domain LIL_12418 PF01225 Mur ligase family, catalytic domain LIL_12418 PF02875 Mur ligase family, glutamate ligase domain LIL_12418 PF08245 Mur ligase middle domain LIL_12419 PF00731 AIR carboxylase LIL_12420 PF02222 ATP-grasp domain LIL_12422 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LIL_12422 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LIL_12422 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LIL_12423 PF00005 ABC transporter LIL_12423 PF14524 Wzt C-terminal domain LIL_12425 PF04002 RadC-like JAB domain LIL_12430 PF01066 CDP-alcohol phosphatidyltransferase LIL_12431 PF00814 Glycoprotease family LIL_12432 PF03572 Peptidase family S41 LIL_12432 PF13180 PDZ domain LIL_12434 PF00717 Peptidase S24-like LIL_12434 PF01726 LexA DNA binding domain LIL_12436 PF16576 LIL_12436 LIL_12437 PF02321 Outer membrane efflux protein LIL_12442 PF01548 LIL_12442 LIL_12443 PF02371 LIL_12443 LIL_12445 PF05345 Putative Ig domain LIL_12446 PF00561 alpha/beta hydrolase fold LIL_12448 PF00795 Carbon-nitrogen hydrolase LIL_12449 PF00560 Leucine Rich Repeat LIL_12449 PF13855 Leucine rich repeat LIL_12450 PF00581 Rhodanese-like domain LIL_12454 PF01694 Rhomboid family LIL_12455 PF01008 Initiation factor 2 subunit family LIL_12457 PF03961 LIL_12457 LIL_12461 PF13690 Chemotaxis phosphatase CheX LIL_12463 PF13649 Methyltransferase domain LIL_12464 PF01909 Nucleotidyltransferase domain LIL_12465 PF05168 HEPN domain LIL_12466 PF09234 Domain of unknown function (DUF1963) LIL_12468 PF02567 Phenazine biosynthesis-like protein LIL_12470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIL_12470 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIL_12471 PF01475 Ferric uptake regulator family LIL_12473 PF16980 LIL_12473 LIL_12475 PF01381 Helix-turn-helix LIL_12475 PF07883 Cupin domain LIL_12477 PF00849 RNA pseudouridylate synthase LIL_12478 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_12479 PF12710 haloacid dehalogenase-like hydrolase LIL_12480 PF01551 Peptidase family M23 LIL_12481 PF01330 RuvA N terminal domain LIL_12481 PF07499 RuvA, C-terminal domain LIL_12481 PF14520 Helix-hairpin-helix domain LIL_12482 PF01613 Flavin reductase like domain LIL_12483 PF08279 HTH domain LIL_12483 PF13280 LIL_12483 LIL_12484 PF00106 short chain dehydrogenase LIL_12488 PF01966 HD domain LIL_12489 PF13481 AAA domain LIL_12489 PF13541 Subunit ChlI of Mg-chelatase LIL_12490 PF01612 3'-5' exonuclease LIL_12491 PF02065 Melibiase LIL_12494 PF00072 Response regulator receiver domain LIL_12494 PF07228 Stage II sporulation protein E (SpoIIE) LIL_12496 PF00850 Histone deacetylase domain LIL_12497 PF00224 Pyruvate kinase, barrel domain LIL_12497 PF02887 Pyruvate kinase, alpha/beta domain LIL_12498 PF00990 GGDEF domain LIL_12498 PF08447 PAS fold LIL_12499 PF00990 GGDEF domain LIL_12499 PF08447 PAS fold LIL_12500 PF00989 PAS fold LIL_12500 PF00990 GGDEF domain LIL_12501 PF00989 PAS fold LIL_12501 PF00990 GGDEF domain LIL_12502 PF00990 GGDEF domain LIL_12502 PF08447 PAS fold LIL_12503 PF08447 PAS fold LIL_12504 PF01609 Transposase DDE domain LIL_12504 PF05598 LIL_12504 LIL_12505 PF00990 GGDEF domain LIL_12505 PF08447 PAS fold LIL_12506 PF00654 Voltage gated chloride channel LIL_12507 PF00586 AIR synthase related protein, N-terminal domain LIL_12507 PF02769 AIR synthase related protein, C-terminal domain LIL_12508 PF04773 FecR protein LIL_12509 PF16939 LIL_12509 LIL_12510 PF06291 LIL_12510 LIL_12511 PF13418 Galactose oxidase, central domain LIL_12512 PF04134 LIL_12512 LIL_12513 PF01055 Glycosyl hydrolases family 31 LIL_12513 PF13802 Galactose mutarotase-like LIL_12515 PF00581 Rhodanese-like domain LIL_12518 PF13365 Trypsin-like peptidase domain LIL_12520 PF00072 Response regulator receiver domain LIL_12520 PF13581 Histidine kinase-like ATPase domain LIL_12522 PF01943 LIL_12522 LIL_12523 PF01569 PAP2 superfamily LIL_12524 PF01553 Acyltransferase LIL_12525 PF01642 Methylmalonyl-CoA mutase LIL_12525 PF02310 B12 binding domain LIL_12525 PF03308 ArgK protein LIL_12526 PF00557 Metallopeptidase family M24 LIL_12527 PF12697 Alpha/beta hydrolase family LIL_12529 PF00920 Dehydratase family LIL_12530 PF04307 LIL_12530 LIL_12531 PF13855 Leucine rich repeat LIL_12532 PF00560 Leucine Rich Repeat LIL_12532 PF13855 Leucine rich repeat LIL_12533 PF13855 Leucine rich repeat LIL_12534 PF03795 YCII-related domain LIL_12535 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_12537 PF00535 Glycosyl transferase family 2 LIL_12542 PF03150 Di-haem cytochrome c peroxidase LIL_12544 PF13557 LIL_12544 LIL_12545 PF05958 tRNA (Uracil-5-)-methyltransferase LIL_12548 PF08486 LIL_12548 LIL_12549 PF00005 ABC transporter LIL_12550 PF02687 LIL_12550 LIL_12553 PF07600 LIL_12553 LIL_12555 PF00156 Phosphoribosyl transferase domain LIL_12556 PF00795 Carbon-nitrogen hydrolase LIL_12556 PF02540 NAD synthase LIL_12559 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_12560 PF04316 Anti-sigma-28 factor, FlgM LIL_12561 PF00465 Iron-containing alcohol dehydrogenase LIL_12562 PF01183 Glycosyl hydrolases family 25 LIL_12563 PF04519 LIL_12563 LIL_12564 PF01368 DHH family LIL_12564 PF02272 DHHA1 domain LIL_12565 PF01743 Poly A polymerase head domain LIL_12565 PF12627 Probable RNA and SrmB- binding site of polymerase A LIL_12566 PF01551 Peptidase family M23 LIL_12567 PF01790 LIL_12567 LIL_12568 PF13649 Methyltransferase domain LIL_12569 PF01580 FtsK/SpoIIIE family LIL_12569 PF09397 Ftsk gamma domain LIL_12569 PF13491 LIL_12569 LIL_12570 PF04087 LIL_12570 LIL_12572 PF05284 LIL_12572 LIL_12573 PF04011 LemA family LIL_12574 PF04536 TLP18 LIL_12575 PF04536 TLP18 LIL_12576 PF04237 YjbR LIL_12577 PF02657 Fe-S metabolism associated domain LIL_12580 PF05406 WGR domain LIL_12580 PF13855 Leucine rich repeat LIL_12581 PF12796 Ankyrin repeats (3 copies) LIL_12584 PF05406 WGR domain LIL_12586 PF08239 Bacterial SH3 domain LIL_12587 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_12593 PF01177 Asp/Glu/Hydantoin racemase LIL_12594 PF00155 Aminotransferase class I and II LIL_12595 PF13180 PDZ domain LIL_12595 PF13365 Trypsin-like peptidase domain LIL_12596 PF10023 LIL_12596 LIL_12597 PF13316 LIL_12597 LIL_12600 PF02371 LIL_12600 LIL_12601 PF01548 LIL_12601 LIL_12602 PF07602 LIL_12602 LIL_12603 PF07676 WD40-like Beta Propeller Repeat LIL_12606 PF01740 STAS domain LIL_12607 PF00535 Glycosyl transferase family 2 LIL_12609 PF04754 LIL_12609 LIL_12610 PF02368 Bacterial Ig-like domain (group 2) LIL_12611 PF06291 LIL_12611 LIL_12613 PF04116 LIL_12613 LIL_12615 PF00206 Lyase LIL_12615 PF10397 Adenylosuccinate lyase C-terminus LIL_12618 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIL_12619 PF02824 TGS domain LIL_12619 PF04607 Region found in RelA / SpoT proteins LIL_12619 PF13291 ACT domain LIL_12619 PF13328 HD domain LIL_12620 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LIL_12620 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LIL_12622 PF07600 LIL_12622 LIL_12625 PF07600 LIL_12625 LIL_12627 PF01551 Peptidase family M23 LIL_12628 PF04390 Lipopolysaccharide-assembly LIL_12629 PF01475 Ferric uptake regulator family LIL_12630 PF01702 Queuine tRNA-ribosyltransferase LIL_12631 PF01740 STAS domain LIL_12632 PF01476 LysM domain LIL_12632 PF14346 Domain of unknown function (DUF4398) LIL_12633 PF02371 LIL_12633 LIL_12636 PF00561 alpha/beta hydrolase fold LIL_12637 PF10672 S-adenosylmethionine-dependent methyltransferase LIL_12638 PF07715 TonB-dependent Receptor Plug Domain LIL_12639 PF07588 LIL_12639 LIL_12640 PF00563 EAL domain LIL_12642 PF12697 Alpha/beta hydrolase family LIL_12643 PF00072 Response regulator receiver domain LIL_12643 PF00486 Transcriptional regulatory protein, C terminal LIL_12644 PF00512 His Kinase A (phospho-acceptor) domain LIL_12644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12644 PF02702 Osmosensitive K+ channel His kinase sensor domain LIL_12644 PF13493 Domain of unknown function (DUF4118) LIL_12645 PF02669 LIL_12645 LIL_12646 PF00122 E1-E2 ATPase LIL_12646 PF00702 haloacid dehalogenase-like hydrolase LIL_12647 PF03814 LIL_12647 LIL_12648 PF00069 Protein kinase domain LIL_12648 PF07228 Stage II sporulation protein E (SpoIIE) LIL_12648 PF13185 GAF domain LIL_12648 PF13191 AAA ATPase domain LIL_12649 PF13450 NAD(P)-binding Rossmann-like domain LIL_12651 PF15571 LIL_12651 LIL_12653 PF03781 Sulfatase-modifying factor enzyme 1 LIL_12654 PF00246 Zinc carboxypeptidase LIL_12655 PF00892 EamA-like transporter family LIL_12656 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LIL_12657 PF01758 Sodium Bile acid symporter family LIL_12658 PF00581 Rhodanese-like domain LIL_12658 PF12368 LIL_12658 LIL_12659 PF12833 Helix-turn-helix domain LIL_12660 PF00108 Thiolase, N-terminal domain LIL_12660 PF02803 Thiolase, C-terminal domain LIL_12661 PF11389 LIL_12661 LIL_12662 PF03150 Di-haem cytochrome c peroxidase LIL_12665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_12665 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_12665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_12666 PF02515 CoA-transferase family III LIL_12668 PF00893 Small Multidrug Resistance protein LIL_12669 PF12697 Alpha/beta hydrolase family LIL_12671 PF00593 TonB dependent receptor LIL_12671 PF07715 TonB-dependent Receptor Plug Domain LIL_12671 PF13715 LIL_12671 LIL_12673 PF07600 LIL_12673 LIL_12674 PF13359 LIL_12674 LIL_12675 PF00743 Flavin-binding monooxygenase-like LIL_12676 PF00107 Zinc-binding dehydrogenase LIL_12676 PF08240 Alcohol dehydrogenase GroES-like domain LIL_12679 PF04551 GcpE protein LIL_12683 PF02493 MORN repeat LIL_12684 PF00149 Calcineurin-like phosphoesterase LIL_12685 PF07228 Stage II sporulation protein E (SpoIIE) LIL_12685 PF13185 GAF domain LIL_12686 PF00248 Aldo/keto reductase family LIL_12687 PF00005 ABC transporter LIL_12687 PF12848 ABC transporter LIL_12691 PF14284 LIL_12691 LIL_12692 PF01867 CRISPR associated protein Cas1 LIL_12692 PF01930 Domain of unknown function DUF83 LIL_12693 PF09827 CRISPR associated protein Cas2 LIL_12695 PF00271 Helicase conserved C-terminal domain LIL_12695 PF09559 LIL_12695 LIL_12697 PF01905 CRISPR-associated negative auto-regulator DevR/Csa2 LIL_12698 PF09704 CRISPR-associated protein (Cas_Cas5) LIL_12701 PF02384 N-6 DNA Methylase LIL_12701 PF12161 HsdM N-terminal domain LIL_12702 PF01420 Type I restriction modification DNA specificity domain LIL_12703 PF13166 LIL_12703 LIL_12704 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LIL_12704 PF04851 Type III restriction enzyme, res subunit LIL_12704 PF12008 Type I restriction and modification enzyme - subunit R C terminal LIL_12706 PF03283 LIL_12706 LIL_12709 PF00753 Metallo-beta-lactamase superfamily LIL_12710 PF00072 Response regulator receiver domain LIL_12711 PF00672 HAMP domain LIL_12711 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_12711 PF08447 PAS fold LIL_12715 PF08327 Activator of Hsp90 ATPase homolog 1-like protein LIL_12717 PF00348 Polyprenyl synthetase LIL_12718 PF13369 LIL_12718 LIL_12720 PF00456 Transketolase, thiamine diphosphate binding domain LIL_12725 PF16927 LIL_12725 LIL_12729 PF04773 FecR protein LIL_12730 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_12730 PF00672 HAMP domain LIL_12734 PF00593 TonB dependent receptor LIL_12734 PF07715 TonB-dependent Receptor Plug Domain LIL_12734 PF13715 LIL_12734 LIL_12736 PF07600 LIL_12736 LIL_12737 PF01618 LIL_12737 LIL_12738 PF02472 Biopolymer transport protein ExbD/TolR LIL_12739 PF02472 Biopolymer transport protein ExbD/TolR LIL_12740 PF03544 Gram-negative bacterial TonB protein C-terminal LIL_12741 PF07119 LIL_12741 LIL_12743 PF00589 Phage integrase family LIL_12744 PF00069 Protein kinase domain LIL_12745 PF04389 Peptidase family M28 LIL_12748 PF04014 Antidote-toxin recognition MazE LIL_12749 PF01850 PIN domain LIL_12753 PF07588 LIL_12753 LIL_12756 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_12757 PF00924 Mechanosensitive ion channel LIL_12759 PF10520 LIL_12759 LIL_12760 PF11026 LIL_12760 LIL_12762 PF14136 LIL_12762 LIL_12763 PF05406 WGR domain LIL_12764 PF01068 ATP dependent DNA ligase domain LIL_12764 PF05406 WGR domain LIL_12765 PF14903 LIL_12765 LIL_12766 PF01964 ThiC family LIL_12769 PF07603 LIL_12769 LIL_12770 PF06865 Protein of unknown function (DUF1255) LIL_12771 PF00106 short chain dehydrogenase LIL_12772 PF01061 LIL_12772 LIL_12773 PF00005 ABC transporter LIL_12774 PF13538 UvrD-like helicase C-terminal domain LIL_12774 PF13604 AAA domain LIL_12775 PF00580 UvrD/REP helicase N-terminal domain LIL_12775 PF12705 PD-(D/E)XK nuclease superfamily LIL_12775 PF13361 UvrD-like helicase C-terminal domain LIL_12776 PF04257 Exodeoxyribonuclease V, gamma subunit LIL_12777 PF00270 DEAD/DEAH box helicase LIL_12777 PF00271 Helicase conserved C-terminal domain LIL_12777 PF16124 LIL_12777 LIL_12778 PF07588 LIL_12778 LIL_12780 PF12686 LIL_12780 LIL_12781 PF03190 Protein of unknown function, DUF255 LIL_12782 PF02321 Outer membrane efflux protein LIL_12783 PF00310 Glutamine amidotransferases class-II LIL_12783 PF01493 GXGXG motif LIL_12783 PF01645 Conserved region in glutamate synthase LIL_12783 PF04898 Glutamate synthase central domain LIL_12785 PF01694 Rhomboid family LIL_12786 PF01047 MarR family LIL_12788 PF02384 N-6 DNA Methylase LIL_12788 PF07669 Eco57I restriction-modification methylase LIL_12788 PF12950 TaqI-like C-terminal specificity domain LIL_12791 PF00675 Insulinase (Peptidase family M16) LIL_12791 PF05193 Peptidase M16 inactive domain LIL_12792 PF00013 KH domain LIL_12792 PF00575 S1 RNA binding domain LIL_12792 PF01138 3' exoribonuclease family, domain 1 LIL_12792 PF03725 3' exoribonuclease family, domain 2 LIL_12792 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LIL_12793 PF00312 Ribosomal protein S15 LIL_12794 PF01509 TruB family pseudouridylate synthase (N terminal domain) LIL_12796 PF00009 Elongation factor Tu GTP binding domain LIL_12796 PF04760 Translation initiation factor IF-2, N-terminal region LIL_12796 PF11987 Translation-initiation factor 2 LIL_12797 PF08529 NusA N-terminal domain LIL_12797 PF13184 NusA-like KH domain LIL_12797 PF14520 Helix-hairpin-helix domain LIL_12798 PF02576 Uncharacterised BCR, YhbC family COG0779 LIL_12800 PF01256 Carbohydrate kinase LIL_12800 PF03853 YjeF-related protein N-terminus LIL_12802 PF13673 Acetyltransferase (GNAT) domain LIL_12803 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system LIL_12805 PF07598 LIL_12805 LIL_12806 PF12146 Putative lysophospholipase LIL_12807 PF07690 Major Facilitator Superfamily LIL_12808 PF13419 Haloacid dehalogenase-like hydrolase LIL_12809 PF13414 TPR repeat LIL_12812 PF02371 LIL_12812 LIL_12813 PF07238 PilZ domain LIL_12813 PF07614 LIL_12813 LIL_12815 PF00378 Enoyl-CoA hydratase/isomerase family LIL_12816 PF13200 LIL_12816 LIL_12817 PF00850 Histone deacetylase domain LIL_12818 PF07600 LIL_12818 LIL_12820 PF01436 NHL repeat LIL_12823 PF02142 MGS-like domain LIL_12827 PF02384 N-6 DNA Methylase LIL_12828 PF01047 MarR family LIL_12829 PF01575 MaoC like domain LIL_12831 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LIL_12832 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LIL_12833 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LIL_12834 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LIL_12835 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin LIL_12836 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LIL_12836 PF10531 SLBB domain LIL_12836 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LIL_12837 PF00146 NADH dehydrogenase LIL_12838 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LIL_12839 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LIL_12840 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains LIL_12840 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LIL_12841 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains LIL_12842 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains LIL_12847 PF04542 Sigma-70 region 2 LIL_12847 PF04545 Sigma-70, region 4 LIL_12849 PF13855 Leucine rich repeat LIL_12850 PF01752 Collagenase LIL_12850 PF08453 Peptidase family M9 N-terminal LIL_12851 PF00171 Aldehyde dehydrogenase family LIL_12852 PF08668 HDOD domain LIL_12854 PF00205 Thiamine pyrophosphate enzyme, central domain LIL_12854 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIL_12854 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LIL_12855 PF08534 Redoxin LIL_12856 PF01740 STAS domain LIL_12858 PF07603 LIL_12858 LIL_12860 PF01467 Cytidylyltransferase LIL_12861 PF00171 Aldehyde dehydrogenase family LIL_12862 PF00696 Amino acid kinase family LIL_12863 PF01018 GTP1/OBG LIL_12863 PF01926 50S ribosome-binding GTPase LIL_12864 PF01016 Ribosomal L27 protein LIL_12865 PF04327 Protein of unknown function (DUF464) LIL_12866 PF00829 Ribosomal prokaryotic L21 protein LIL_12867 PF06983 3-demethylubiquinone-9 3-methyltransferase LIL_12868 PF09674 LIL_12868 LIL_12869 PF00682 HMGL-like LIL_12871 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) LIL_12872 PF13231 LIL_12872 LIL_12874 PF04055 Radical SAM superfamily LIL_12874 PF13394 4Fe-4S single cluster domain LIL_12875 PF00218 Indole-3-glycerol phosphate synthase LIL_12876 PF01740 STAS domain LIL_12877 PF02875 Mur ligase family, glutamate ligase domain LIL_12877 PF08245 Mur ligase middle domain LIL_12879 PF07599 LIL_12879 LIL_12880 PF07598 LIL_12880 LIL_12881 PF03309 Type III pantothenate kinase LIL_12882 PF02237 Biotin protein ligase C terminal domain LIL_12882 PF03099 Biotin/lipoate A/B protein ligase family LIL_12884 PF00108 Thiolase, N-terminal domain LIL_12884 PF02803 Thiolase, C-terminal domain LIL_12887 PF00440 Bacterial regulatory proteins, tetR family LIL_12889 PF01641 SelR domain LIL_12892 PF03602 Conserved hypothetical protein 95 LIL_12897 PF00072 Response regulator receiver domain LIL_12897 PF00196 Bacterial regulatory proteins, luxR family LIL_12898 PF07695 LIL_12898 LIL_12898 PF07730 Histidine kinase LIL_12902 PF05491 Holliday junction DNA helicase ruvB C-terminus LIL_12902 PF05496 Holliday junction DNA helicase ruvB N-terminus LIL_12903 PF13180 PDZ domain LIL_12903 PF13365 Trypsin-like peptidase domain LIL_12904 PF13365 Trypsin-like peptidase domain LIL_12905 PF02223 Thymidylate kinase LIL_12908 PF13181 Tetratricopeptide repeat LIL_12908 PF13432 Tetratricopeptide repeat LIL_12910 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LIL_12911 PF04519 LIL_12911 LIL_12915 PF00583 Acetyltransferase (GNAT) family LIL_12916 PF07600 LIL_12916 LIL_12918 PF01464 Transglycosylase SLT domain LIL_12919 PF00285 Citrate synthase LIL_12920 PF10672 S-adenosylmethionine-dependent methyltransferase LIL_12921 PF10672 S-adenosylmethionine-dependent methyltransferase LIL_12922 PF00588 SpoU rRNA Methylase family LIL_12922 PF08032 RNA 2'-O ribose methyltransferase substrate binding LIL_12924 PF12706 Beta-lactamase superfamily domain LIL_12925 PF16702 LIL_12925 LIL_12926 PF01527 Transposase LIL_12927 PF00665 Integrase core domain LIL_12928 PF05154 LIL_12928 LIL_12928 PF13248 LIL_12928 LIL_12929 PF10825 LIL_12929 LIL_12930 PF00487 LIL_12930 LIL_12931 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LIL_12931 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LIL_12932 PF09969 LIL_12932 LIL_12933 PF00155 Aminotransferase class I and II LIL_12935 PF01344 Kelch motif LIL_12935 PF13415 Galactose oxidase, central domain LIL_12936 PF16250 LIL_12936 LIL_12937 PF16401 LIL_12937 LIL_12939 PF07598 LIL_12939 LIL_12940 PF01196 Ribosomal protein L17 LIL_12941 PF01000 RNA polymerase Rpb3/RpoA insert domain LIL_12941 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LIL_12941 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LIL_12942 PF00163 Ribosomal protein S4/S9 N-terminal domain LIL_12942 PF01479 S4 domain LIL_12943 PF00411 Ribosomal protein S11 LIL_12944 PF00416 Ribosomal protein S13/S18 LIL_12945 PF01176 Translation initiation factor 1A / IF-1 LIL_12946 PF00406 Adenylate kinase LIL_12947 PF00344 SecY translocase LIL_12948 PF00828 Ribosomal protein L18e/L15 LIL_12949 PF00327 Ribosomal protein L30p/L7e LIL_12950 PF00333 Ribosomal protein S5, N-terminal domain LIL_12950 PF03719 Ribosomal protein S5, C-terminal domain LIL_12951 PF00861 Ribosomal L18p/L5e family LIL_12952 PF00347 Ribosomal protein L6 LIL_12953 PF00410 Ribosomal protein S8 LIL_12954 PF00281 Ribosomal protein L5 LIL_12954 PF00673 ribosomal L5P family C-terminus LIL_12955 PF00467 KOW motif LIL_12955 PF17136 LIL_12955 LIL_12956 PF00238 Ribosomal protein L14p/L23e LIL_12957 PF00366 Ribosomal protein S17 LIL_12958 PF00831 Ribosomal L29 protein LIL_12959 PF00252 Ribosomal protein L16p/L10e LIL_12960 PF00189 Ribosomal protein S3, C-terminal domain LIL_12960 PF07650 KH domain LIL_12961 PF00237 Ribosomal protein L22p/L17e LIL_12962 PF00203 Ribosomal protein S19 LIL_12963 PF00181 Ribosomal Proteins L2, RNA binding domain LIL_12963 PF03947 Ribosomal Proteins L2, C-terminal domain LIL_12964 PF00276 Ribosomal protein L23 LIL_12965 PF00573 Ribosomal protein L4/L1 family LIL_12966 PF00297 Ribosomal protein L3 LIL_12967 PF00338 Ribosomal protein S10p/S20e LIL_12968 PF00009 Elongation factor Tu GTP binding domain LIL_12968 PF03143 Elongation factor Tu C-terminal domain LIL_12968 PF03144 Elongation factor Tu domain 2 LIL_12969 PF00009 Elongation factor Tu GTP binding domain LIL_12969 PF00679 Elongation factor G C-terminus LIL_12969 PF14492 Elongation Factor G, domain II LIL_12971 PF00578 AhpC/TSA family LIL_12974 PF07600 LIL_12974 LIL_12975 PF15585 LIL_12975 LIL_12976 PF02142 MGS-like domain LIL_12976 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIL_12976 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LIL_12977 PF00884 Sulfatase LIL_12978 PF02075 Crossover junction endodeoxyribonuclease RuvC LIL_12979 PF01709 Transcriptional regulator LIL_12980 PF11845 LIL_12980 LIL_12988 PF01551 Peptidase family M23 LIL_12988 PF07591 Pretoxin HINT domain LIL_12989 PF04754 LIL_12989 LIL_12990 PF07715 TonB-dependent Receptor Plug Domain LIL_12991 PF00560 Leucine Rich Repeat LIL_12991 PF13855 Leucine rich repeat LIL_12993 PF05406 WGR domain LIL_12993 PF13569 LIL_12993 LIL_12993 PF13855 Leucine rich repeat LIL_12994 PF07728 AAA domain (dynein-related subfamily) LIL_12996 PF05762 VWA domain containing CoxE-like protein LIL_12998 PF07588 LIL_12998 LIL_13000 PF00474 Sodium:solute symporter family LIL_13001 PF00696 Amino acid kinase family LIL_13001 PF01842 ACT domain LIL_13001 PF13840 ACT domain LIL_13003 PF04851 Type III restriction enzyme, res subunit LIL_13004 PF00271 Helicase conserved C-terminal domain LIL_13005 PF09704 CRISPR-associated protein (Cas_Cas5) LIL_13006 PF09709 LIL_13006 LIL_13007 PF05107 LIL_13007 LIL_13008 PF01930 Domain of unknown function DUF83 LIL_13009 PF01867 CRISPR associated protein Cas1 LIL_13010 PF09827 CRISPR associated protein Cas2 LIL_13015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_13015 PF02743 Cache domain LIL_13016 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_13017 PF13145 PPIC-type PPIASE domain LIL_13017 PF13624 SurA N-terminal domain LIL_13018 PF04055 Radical SAM superfamily LIL_13018 PF13186 Iron-sulfur cluster-binding domain LIL_13018 PF13394 4Fe-4S single cluster domain LIL_13019 PF02348 Cytidylyltransferase LIL_13020 PF00285 Citrate synthase LIL_13023 PF00034 Cytochrome c LIL_13023 PF03150 Di-haem cytochrome c peroxidase LIL_13024 PF00753 Metallo-beta-lactamase superfamily LIL_13026 PF07603 LIL_13026 LIL_13027 PF01618 LIL_13027 LIL_13029 PF06949 LIL_13029 LIL_13031 PF14279 LIL_13031 LIL_13032 PF01238 Phosphomannose isomerase type I LIL_13033 PF00226 DnaJ domain LIL_13035 PF01740 STAS domain LIL_13037 PF01694 Rhomboid family LIL_13038 PF00271 Helicase conserved C-terminal domain LIL_13038 PF02151 UvrB/uvrC motif LIL_13038 PF04851 Type III restriction enzyme, res subunit LIL_13038 PF12344 Ultra-violet resistance protein B LIL_13040 PF00588 SpoU rRNA Methylase family LIL_13041 PF00575 S1 RNA binding domain LIL_13044 PF00535 Glycosyl transferase family 2 LIL_13046 PF00665 Integrase core domain LIL_13047 PF01527 Transposase LIL_13048 PF00669 Bacterial flagellin N-terminal helical region LIL_13050 PF08501 Shikimate dehydrogenase substrate binding domain LIL_13051 PF08245 Mur ligase middle domain LIL_13053 PF08308 LIL_13053 LIL_13054 PF00528 Binding-protein-dependent transport system inner membrane component LIL_13055 PF00528 Binding-protein-dependent transport system inner membrane component LIL_13056 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LIL_13061 PF13641 Glycosyltransferase like family 2 LIL_13064 PF00270 DEAD/DEAH box helicase LIL_13064 PF00271 Helicase conserved C-terminal domain LIL_13064 PF00570 HRDC domain LIL_13064 PF09382 RQC domain LIL_13064 PF16124 LIL_13064 LIL_13067 PF07598 LIL_13067 LIL_13068 PF02445 Quinolinate synthetase A protein LIL_13074 PF00091 Tubulin/FtsZ family, GTPase domain LIL_13074 PF12327 FtsZ family, C-terminal domain LIL_13075 PF02491 SHS2 domain inserted in FTSA LIL_13075 PF14450 Cell division protein FtsA LIL_13076 PF08478 POTRA domain, FtsQ-type LIL_13078 PF02470 LIL_13078 LIL_13079 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LIL_13080 PF00856 SET domain LIL_13081 PF08241 Methyltransferase domain LIL_13082 PF13450 NAD(P)-binding Rossmann-like domain LIL_13084 PF01625 Peptide methionine sulfoxide reductase LIL_13085 PF13426 PAS domain LIL_13086 PF14526 Integron-associated effector binding protein LIL_13087 PF13410 Glutathione S-transferase, C-terminal domain LIL_13087 PF13417 Glutathione S-transferase, N-terminal domain LIL_13088 PF00122 E1-E2 ATPase LIL_13088 PF00403 Heavy-metal-associated domain LIL_13088 PF00702 haloacid dehalogenase-like hydrolase LIL_13089 PF00403 Heavy-metal-associated domain LIL_13090 PF02583 Metal-sensitive transcriptional repressor LIL_13091 PF07598 LIL_13091 LIL_13092 PF07599 LIL_13092 LIL_13094 PF07598 LIL_13094 LIL_13095 PF07599 LIL_13095 LIL_13096 PF07819 PGAP1-like protein LIL_13098 PF01548 LIL_13098 LIL_13098 PF02371 LIL_13098 LIL_13100 PF00873 AcrB/AcrD/AcrF family LIL_13101 PF02321 Outer membrane efflux protein LIL_13103 PF00484 Carbonic anhydrase LIL_13103 PF00916 LIL_13103 LIL_13105 PF07614 LIL_13105 LIL_13107 PF09335 LIL_13107 LIL_13109 PF00593 TonB dependent receptor LIL_13109 PF07715 TonB-dependent Receptor Plug Domain LIL_13110 PF13795 LIL_13110 LIL_13111 PF13145 PPIC-type PPIASE domain LIL_13112 PF12228 LIL_13112 LIL_13113 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LIL_13114 PF00106 short chain dehydrogenase LIL_13114 PF13561 Enoyl-(Acyl carrier protein) reductase LIL_13115 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_13117 PF07588 LIL_13117 LIL_13118 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_13118 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_13118 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_13119 PF07119 LIL_13119 LIL_13119 PF12796 Ankyrin repeats (3 copies) LIL_13120 PF10101 LIL_13120 LIL_13122 PF02618 YceG-like family LIL_13123 PF01502 Phosphoribosyl-AMP cyclohydrolase LIL_13124 PF00873 AcrB/AcrD/AcrF family LIL_13129 PF07075 Protein of unknown function (DUF1343) LIL_13131 PF13527 Acetyltransferase (GNAT) domain LIL_13132 PF01965 DJ-1/PfpI family LIL_13133 PF13419 Haloacid dehalogenase-like hydrolase LIL_13134 PF10974 LIL_13134 LIL_13138 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_13140 PF00704 Glycosyl hydrolases family 18 LIL_13146 PF13520 Amino acid permease LIL_13148 PF01142 tRNA pseudouridine synthase D (TruD) LIL_13149 PF01047 MarR family LIL_13151 PF07681 LIL_13151 LIL_13152 PF14542 GCN5-related N-acetyl-transferase LIL_13154 PF03486 HI0933-like protein LIL_13155 PF00892 EamA-like transporter family LIL_13156 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_13157 PF01381 Helix-turn-helix LIL_13160 PF04620 LIL_13160 LIL_13163 PF00817 impB/mucB/samB family LIL_13163 PF11798 IMS family HHH motif LIL_13163 PF11799 impB/mucB/samB family C-terminal domain LIL_13164 PF00487 LIL_13164 LIL_13167 PF00691 OmpA family LIL_13168 PF13564 LIL_13168 LIL_13169 PF17263 LIL_13169 LIL_13173 PF03352 Methyladenine glycosylase LIL_13174 PF10974 LIL_13174 LIL_13175 PF06739 LIL_13175 LIL_13176 PF02371 LIL_13176 LIL_13177 PF01548 LIL_13177 LIL_13181 PF01161 Phosphatidylethanolamine-binding protein LIL_13182 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_13182 PF07695 LIL_13182 LIL_13182 PF07696 7TMR-DISM extracellular 2 LIL_13183 PF07681 LIL_13183 LIL_13184 PF02678 Pirin LIL_13184 PF05726 Pirin C-terminal cupin domain LIL_13186 PF00072 Response regulator receiver domain LIL_13186 PF00512 His Kinase A (phospho-acceptor) domain LIL_13186 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13188 PF05036 Sporulation related domain LIL_13189 PF01121 Dephospho-CoA kinase LIL_13191 PF16130 LIL_13191 LIL_13192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13192 PF07730 Histidine kinase LIL_13193 PF00072 Response regulator receiver domain LIL_13193 PF00196 Bacterial regulatory proteins, luxR family LIL_13195 PF00873 AcrB/AcrD/AcrF family LIL_13196 PF01343 Peptidase family S49 LIL_13198 PF01975 Survival protein SurE LIL_13199 PF13174 Tetratricopeptide repeat LIL_13199 PF13181 Tetratricopeptide repeat LIL_13201 PF01370 NAD dependent epimerase/dehydratase family LIL_13201 PF08338 Domain of unknown function (DUF1731) LIL_13204 PF01839 FG-GAP repeat LIL_13204 PF13205 Bacterial Ig-like domain LIL_13204 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella LIL_13205 PF03167 Uracil DNA glycosylase superfamily LIL_13206 PF01740 STAS domain LIL_13207 PF00288 GHMP kinases N terminal domain LIL_13207 PF08544 GHMP kinases C terminal LIL_13207 PF10509 Galactokinase galactose-binding signature LIL_13208 PF00342 Phosphoglucose isomerase LIL_13211 PF12804 MobA-like NTP transferase domain LIL_13212 PF01636 Phosphotransferase enzyme family LIL_13213 PF00072 Response regulator receiver domain LIL_13213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13213 PF08448 PAS fold LIL_13214 PF00512 His Kinase A (phospho-acceptor) domain LIL_13214 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13214 PF08448 PAS fold LIL_13214 PF13426 PAS domain LIL_13215 PF12146 Putative lysophospholipase LIL_13217 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIL_13218 PF13370 4Fe-4S single cluster domain LIL_13220 PF00563 EAL domain LIL_13220 PF00990 GGDEF domain LIL_13222 PF07879 LIL_13222 LIL_13224 PF07606 Protein of unknown function (DUF1569) LIL_13225 PF12833 Helix-turn-helix domain LIL_13228 PF01588 Putative tRNA binding domain LIL_13228 PF09334 tRNA synthetases class I (M) LIL_13229 PF01966 HD domain LIL_13229 PF08335 GlnD PII-uridylyltransferase LIL_13230 PF04264 YceI-like domain LIL_13232 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family LIL_13233 PF00873 AcrB/AcrD/AcrF family LIL_13234 PF02321 Outer membrane efflux protein LIL_13235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_13235 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_13235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_13236 PF00990 GGDEF domain LIL_13236 PF01590 GAF domain LIL_13237 PF01565 FAD binding domain LIL_13237 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LIL_13241 PF04127 DNA / pantothenate metabolism flavoprotein LIL_13242 PF02441 Flavoprotein LIL_13243 PF00571 CBS domain LIL_13243 PF01595 LIL_13243 LIL_13243 PF03471 Transporter associated domain LIL_13245 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LIL_13245 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LIL_13247 PF00149 Calcineurin-like phosphoesterase LIL_13250 PF00270 DEAD/DEAH box helicase LIL_13250 PF00271 Helicase conserved C-terminal domain LIL_13250 PF17191 LIL_13250 LIL_13253 PF02557 D-alanyl-D-alanine carboxypeptidase LIL_13254 PF01370 NAD dependent epimerase/dehydratase family LIL_13255 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_13255 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LIL_13256 PF01627 Hpt domain LIL_13258 PF02661 Fic/DOC family LIL_13260 PF00793 DAHP synthetase I family LIL_13261 PF02548 Ketopantoate hydroxymethyltransferase LIL_13262 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LIL_13263 PF01695 IstB-like ATP binding protein LIL_13266 PF16363 LIL_13266 LIL_13267 PF01554 MatE LIL_13268 PF07600 LIL_13268 LIL_13269 PF00962 Adenosine/AMP deaminase LIL_13271 PF02386 Cation transport protein LIL_13272 PF02080 TrkA-C domain LIL_13272 PF02254 TrkA-N domain LIL_13273 PF00248 Aldo/keto reductase family LIL_13275 PF00708 Acylphosphatase LIL_13276 PF01152 Bacterial-like globin LIL_13277 PF00293 NUDIX domain LIL_13278 PF00856 SET domain LIL_13279 PF03009 Glycerophosphoryl diester phosphodiesterase family LIL_13281 PF03562 MltA specific insert domain LIL_13281 PF06725 3D domain LIL_13282 PF07695 LIL_13282 LIL_13282 PF07696 7TMR-DISM extracellular 2 LIL_13282 PF12833 Helix-turn-helix domain LIL_13283 PF14539 Domain of unknown function (DUF4442) LIL_13284 PF00999 Sodium/hydrogen exchanger family LIL_13284 PF02080 TrkA-C domain LIL_13285 PF14375 LIL_13285 LIL_13286 PF00583 Acetyltransferase (GNAT) family LIL_13288 PF02310 B12 binding domain LIL_13288 PF04055 Radical SAM superfamily LIL_13289 PF00072 Response regulator receiver domain LIL_13289 PF00512 His Kinase A (phospho-acceptor) domain LIL_13289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13289 PF07695 LIL_13289 LIL_13289 PF07696 7TMR-DISM extracellular 2 LIL_13290 PF03193 Protein of unknown function, DUF258 LIL_13291 PF00561 alpha/beta hydrolase fold LIL_13291 PF00732 GMC oxidoreductase LIL_13291 PF05199 GMC oxidoreductase LIL_13292 PF00732 GMC oxidoreductase LIL_13292 PF05199 GMC oxidoreductase LIL_13293 PF13489 Methyltransferase domain LIL_13298 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_13298 PF13181 Tetratricopeptide repeat LIL_13298 PF13191 AAA ATPase domain LIL_13299 PF00732 GMC oxidoreductase LIL_13299 PF05199 GMC oxidoreductase LIL_13302 PF01545 Cation efflux family LIL_13303 PF03061 Thioesterase superfamily LIL_13304 PF00912 Transglycosylase LIL_13305 PF01872 RibD C-terminal domain LIL_13306 PF04324 BFD-like [2Fe-2S] binding domain LIL_13307 PF11700 LIL_13307 LIL_13311 PF03626 LIL_13311 LIL_13315 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_13316 PF01588 Putative tRNA binding domain LIL_13316 PF03147 Ferredoxin-fold anticodon binding domain LIL_13316 PF03483 B3/4 domain LIL_13316 PF03484 tRNA synthetase B5 domain LIL_13317 PF00176 SNF2 family N-terminal domain LIL_13317 PF00271 Helicase conserved C-terminal domain LIL_13318 PF13394 4Fe-4S single cluster domain LIL_13319 PF03279 LIL_13319 LIL_13320 PF00719 Inorganic pyrophosphatase LIL_13321 PF07690 Major Facilitator Superfamily LIL_13324 PF13376 LIL_13324 LIL_13326 PF13372 Alginate export LIL_13327 PF00270 DEAD/DEAH box helicase LIL_13327 PF00271 Helicase conserved C-terminal domain LIL_13328 PF03781 Sulfatase-modifying factor enzyme 1 LIL_13329 PF00106 short chain dehydrogenase LIL_13330 PF11136 LIL_13330 LIL_13331 PF03547 LIL_13331 LIL_13331 PF12796 Ankyrin repeats (3 copies) LIL_13332 PF03641 Possible lysine decarboxylase LIL_13335 PF03819 MazG nucleotide pyrophosphohydrolase domain LIL_13337 PF00072 Response regulator receiver domain LIL_13339 PF00180 Isocitrate/isopropylmalate dehydrogenase LIL_13344 PF07588 LIL_13344 LIL_13345 PF15428 LIL_13345 LIL_13346 PF00795 Carbon-nitrogen hydrolase LIL_13347 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LIL_13348 PF00037 4Fe-4S binding domain LIL_13348 PF12838 4Fe-4S dicluster domain LIL_13353 PF03168 Late embryogenesis abundant protein LIL_13354 PF00107 Zinc-binding dehydrogenase LIL_13354 PF08240 Alcohol dehydrogenase GroES-like domain LIL_13356 PF11827 LIL_13356 LIL_13358 PF02567 Phenazine biosynthesis-like protein LIL_13359 PF00156 Phosphoribosyl transferase domain LIL_13359 PF13537 Glutamine amidotransferase domain LIL_13360 PF00570 HRDC domain LIL_13360 PF01612 3'-5' exonuclease LIL_13361 PF00293 NUDIX domain LIL_13365 PF04542 Sigma-70 region 2 LIL_13365 PF08281 Sigma-70, region 4 LIL_13368 PF00072 Response regulator receiver domain LIL_13368 PF00486 Transcriptional regulatory protein, C terminal LIL_13369 PF00512 His Kinase A (phospho-acceptor) domain LIL_13369 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13370 PF01960 ArgJ family LIL_13372 PF07228 Stage II sporulation protein E (SpoIIE) LIL_13374 PF05076 Suppressor of fused protein (SUFU) LIL_13379 PF01575 MaoC like domain LIL_13380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIL_13380 PF02770 Acyl-CoA dehydrogenase, middle domain LIL_13380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIL_13381 PF00533 BRCA1 C Terminus (BRCT) domain LIL_13381 PF01653 NAD-dependent DNA ligase adenylation domain LIL_13381 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LIL_13381 PF03120 NAD-dependent DNA ligase OB-fold domain LIL_13381 PF14520 Helix-hairpin-helix domain LIL_13382 PF01551 Peptidase family M23 LIL_13384 PF04542 Sigma-70 region 2 LIL_13384 PF08281 Sigma-70, region 4 LIL_13386 PF02698 DUF218 domain LIL_13387 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13387 PF07568 LIL_13387 LIL_13388 PF07568 LIL_13388 LIL_13390 PF12796 Ankyrin repeats (3 copies) LIL_13391 PF00196 Bacterial regulatory proteins, luxR family LIL_13392 PF01435 Peptidase family M48 LIL_13394 PF01661 Macro domain LIL_13396 PF07588 LIL_13396 LIL_13397 PF03358 NADPH-dependent FMN reductase LIL_13398 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LIL_13398 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LIL_13399 PF00108 Thiolase, N-terminal domain LIL_13399 PF02803 Thiolase, C-terminal domain LIL_13402 PF14903 LIL_13402 LIL_13405 PF02493 MORN repeat LIL_13409 PF13279 Thioesterase-like superfamily LIL_13410 PF01409 tRNA synthetases class II core domain (F) LIL_13410 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LIL_13411 PF01225 Mur ligase family, catalytic domain LIL_13411 PF02875 Mur ligase family, glutamate ligase domain LIL_13411 PF08245 Mur ligase middle domain LIL_13413 PF14238 LIL_13413 LIL_13414 PF09822 LIL_13414 LIL_13415 PF12679 LIL_13415 LIL_13416 PF00005 ABC transporter LIL_13418 PF13644 LIL_13418 LIL_13419 PF16073 LIL_13419 LIL_13420 PF11074 LIL_13420 LIL_13421 PF01447 Thermolysin metallopeptidase, catalytic domain LIL_13421 PF02868 Thermolysin metallopeptidase, alpha-helical domain LIL_13421 PF03413 Peptidase propeptide and YPEB domain LIL_13421 PF07504 Fungalysin/Thermolysin Propeptide Motif LIL_13422 PF01447 Thermolysin metallopeptidase, catalytic domain LIL_13422 PF02868 Thermolysin metallopeptidase, alpha-helical domain LIL_13422 PF07504 Fungalysin/Thermolysin Propeptide Motif LIL_13423 PF01447 Thermolysin metallopeptidase, catalytic domain LIL_13423 PF02868 Thermolysin metallopeptidase, alpha-helical domain LIL_13423 PF03413 Peptidase propeptide and YPEB domain LIL_13423 PF07504 Fungalysin/Thermolysin Propeptide Motif LIL_13424 PF01447 Thermolysin metallopeptidase, catalytic domain LIL_13424 PF02868 Thermolysin metallopeptidase, alpha-helical domain LIL_13424 PF03413 Peptidase propeptide and YPEB domain LIL_13424 PF07504 Fungalysin/Thermolysin Propeptide Motif LIL_13426 PF00764 Arginosuccinate synthase LIL_13427 PF01467 Cytidylyltransferase LIL_13428 PF00334 Nucleoside diphosphate kinase LIL_13430 PF00180 Isocitrate/isopropylmalate dehydrogenase LIL_13432 PF00072 Response regulator receiver domain LIL_13433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13433 PF08447 PAS fold LIL_13434 PF13370 4Fe-4S single cluster domain LIL_13436 PF00732 GMC oxidoreductase LIL_13436 PF05199 GMC oxidoreductase LIL_13437 PF11146 LIL_13437 LIL_13438 PF00155 Aminotransferase class I and II LIL_13440 PF00246 Zinc carboxypeptidase LIL_13442 PF13677 LIL_13442 LIL_13445 PF07600 LIL_13445 LIL_13446 PF04305 LIL_13446 LIL_13447 PF13581 Histidine kinase-like ATPase domain LIL_13448 PF00749 tRNA synthetases class I (E and Q), catalytic domain LIL_13450 PF00521 DNA gyrase/topoisomerase IV, subunit A LIL_13451 PF00204 DNA gyrase B LIL_13451 PF01751 Toprim domain LIL_13451 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_13456 PF01593 Flavin containing amine oxidoreductase LIL_13459 PF02277 Phosphoribosyltransferase LIL_13460 PF02654 LIL_13460 LIL_13461 PF00300 Histidine phosphatase superfamily (branch 1) LIL_13462 PF13519 von Willebrand factor type A domain LIL_13463 PF13598 LIL_13463 LIL_13463 PF13600 LIL_13463 LIL_13464 PF13598 LIL_13464 LIL_13464 PF13600 LIL_13464 LIL_13466 PF00654 Voltage gated chloride channel LIL_13469 PF02517 CAAX protease self-immunity LIL_13470 PF01476 LysM domain LIL_13470 PF01551 Peptidase family M23 LIL_13471 PF03088 Strictosidine synthase LIL_13472 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LIL_13472 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LIL_13473 PF13241 Putative NAD(P)-binding LIL_13474 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_13475 PF00009 Elongation factor Tu GTP binding domain LIL_13476 PF01507 Phosphoadenosine phosphosulfate reductase family LIL_13477 PF01507 Phosphoadenosine phosphosulfate reductase family LIL_13478 PF00665 Integrase core domain LIL_13479 PF01527 Transposase LIL_13481 PF13450 NAD(P)-binding Rossmann-like domain LIL_13482 PF01527 Transposase LIL_13483 PF00665 Integrase core domain LIL_13485 PF07143 Hydroxyneurosporene synthase (CrtC) LIL_13485 PF17186 LIL_13485 LIL_13486 PF00528 Binding-protein-dependent transport system inner membrane component LIL_13487 PF00528 Binding-protein-dependent transport system inner membrane component LIL_13487 PF12911 LIL_13487 LIL_13488 PF00005 ABC transporter LIL_13488 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIL_13489 PF00005 ABC transporter LIL_13489 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIL_13490 PF05170 LIL_13490 LIL_13490 PF13502 LIL_13490 LIL_13492 PF07600 LIL_13492 LIL_13493 PF00488 MutS domain V LIL_13496 PF00656 Caspase domain LIL_13496 PF13620 Carboxypeptidase regulatory-like domain LIL_13497 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LIL_13497 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain LIL_13498 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_13499 PF02566 OsmC-like protein LIL_13500 PF00743 Flavin-binding monooxygenase-like LIL_13501 PF09423 PhoD-like phosphatase LIL_13502 PF12146 Putative lysophospholipase LIL_13503 PF01048 Phosphorylase superfamily LIL_13504 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIL_13505 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LIL_13505 PF12833 Helix-turn-helix domain LIL_13506 PF01497 Periplasmic binding protein LIL_13507 PF00501 AMP-binding enzyme LIL_13507 PF13193 AMP-binding enzyme C-terminal domain LIL_13507 PF16177 LIL_13507 LIL_13508 PF01227 GTP cyclohydrolase I LIL_13509 PF00534 Glycosyl transferases group 1 LIL_13509 PF13439 Glycosyltransferase Family 4 LIL_13510 PF08327 Activator of Hsp90 ATPase homolog 1-like protein LIL_13511 PF01022 Bacterial regulatory protein, arsR family LIL_13513 PF01370 NAD dependent epimerase/dehydratase family LIL_13516 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LIL_13516 PF01553 Acyltransferase LIL_13516 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LIL_13517 PF02222 ATP-grasp domain LIL_13518 PF04773 FecR protein LIL_13519 PF07695 LIL_13519 LIL_13519 PF07696 7TMR-DISM extracellular 2 LIL_13519 PF12833 Helix-turn-helix domain LIL_13520 PF05982 LIL_13520 LIL_13521 PF13372 Alginate export LIL_13522 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains LIL_13523 PF00146 NADH dehydrogenase LIL_13525 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains LIL_13526 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LIL_13527 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LIL_13527 PF13237 4Fe-4S dicluster domain LIL_13530 PF00072 Response regulator receiver domain LIL_13532 PF00704 Glycosyl hydrolases family 18 LIL_13533 PF03881 Fructosamine kinase LIL_13535 PF00005 ABC transporter LIL_13536 PF12698 ABC-2 family transporter protein LIL_13537 PF01180 Dihydroorotate dehydrogenase LIL_13538 PF05572 Pregnancy-associated plasma protein-A LIL_13541 PF00300 Histidine phosphatase superfamily (branch 1) LIL_13542 PF00156 Phosphoribosyl transferase domain LIL_13543 PF00999 Sodium/hydrogen exchanger family LIL_13543 PF02254 TrkA-N domain LIL_13544 PF06945 LIL_13544 LIL_13545 PF01047 MarR family LIL_13546 PF00255 Glutathione peroxidase LIL_13547 PF17124 LIL_13547 LIL_13548 PF00999 Sodium/hydrogen exchanger family LIL_13548 PF02254 TrkA-N domain LIL_13552 PF02599 Global regulator protein family LIL_13553 PF02623 FliW protein LIL_13554 PF00669 Bacterial flagellin N-terminal helical region LIL_13554 PF00700 Bacterial flagellin C-terminal helical region LIL_13554 PF07196 Flagellin hook IN motif LIL_13555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIL_13555 PF07196 Flagellin hook IN motif LIL_13556 PF05130 FlgN protein LIL_13557 PF01551 Peptidase family M23 LIL_13558 PF08922 Domain of unknown function (DUF1905) LIL_13559 PF11042 LIL_13559 LIL_13564 PF13146 LIL_13564 LIL_13566 PF04241 LIL_13566 LIL_13568 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LIL_13570 PF07588 LIL_13570 LIL_13572 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_13572 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LIL_13572 PF14602 Hexapeptide repeat of succinyl-transferase LIL_13573 PF00175 Oxidoreductase NAD-binding domain LIL_13575 PF02229 Transcriptional Coactivator p15 (PC4) LIL_13576 PF14437 LIL_13576 LIL_13577 PF13177 DNA polymerase III, delta subunit LIL_13578 PF02575 YbaB/EbfC DNA-binding family LIL_13579 PF02132 RecR protein LIL_13579 PF13662 Toprim domain LIL_13581 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIL_13582 PF00691 OmpA family LIL_13582 PF07676 WD40-like Beta Propeller Repeat LIL_13583 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIL_13583 PF02403 Seryl-tRNA synthetase N-terminal domain LIL_13584 PF01026 TatD related DNase LIL_13585 PF01551 Peptidase family M23 LIL_13586 PF04519 LIL_13586 LIL_13587 PF03885 Protein of unknown function (DUF327) LIL_13591 PF02195 ParB-like nuclease domain LIL_13592 PF13614 AAA domain LIL_13593 PF02527 rRNA small subunit methyltransferase G LIL_13594 PF01546 Peptidase family M20/M25/M40 LIL_13594 PF07687 Peptidase dimerisation domain LIL_13595 PF01527 Transposase LIL_13596 PF00665 Integrase core domain LIL_13598 PF01134 Glucose inhibited division protein A LIL_13598 PF13932 GidA associated domain 3 LIL_13599 PF01063 Aminotransferase class IV LIL_13600 PF13177 DNA polymerase III, delta subunit LIL_20001 PF00754 F5/8 type C domain LIL_20002 PF02219 Methylenetetrahydrofolate reductase LIL_20004 PF02621 Menaquinone biosynthesis LIL_20005 PF08282 haloacid dehalogenase-like hydrolase LIL_20007 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LIL_20008 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LIL_20009 PF00490 Delta-aminolevulinic acid dehydratase LIL_20010 PF00202 Aminotransferase class-III LIL_20011 PF00512 His Kinase A (phospho-acceptor) domain LIL_20011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20012 PF00072 Response regulator receiver domain LIL_20012 PF00486 Transcriptional regulatory protein, C terminal LIL_20013 PF01208 Uroporphyrinogen decarboxylase (URO-D) LIL_20014 PF04055 Radical SAM superfamily LIL_20016 PF13450 NAD(P)-binding Rossmann-like domain LIL_20018 PF00762 Ferrochelatase LIL_20019 PF16939 LIL_20019 LIL_20020 PF13614 AAA domain LIL_20021 PF02195 ParB-like nuclease domain LIL_20022 PF03358 NADPH-dependent FMN reductase LIL_20025 PF01527 Transposase LIL_20026 PF00665 Integrase core domain LIL_20027 PF05066 HB1, ASXL, restriction endonuclease HTH domain LIL_20028 PF01757 LIL_20028 LIL_20031 PF00106 short chain dehydrogenase LIL_20032 PF01451 Low molecular weight phosphotyrosine protein phosphatase LIL_20033 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIL_20037 PF00106 short chain dehydrogenase LIL_20038 PF08327 Activator of Hsp90 ATPase homolog 1-like protein LIL_20040 PF07611 LIL_20040 LIL_20043 PF07661 LIL_20043 LIL_20045 PF07726 ATPase family associated with various cellular activities (AAA) LIL_20046 PF01882 LIL_20046 LIL_20048 PF00092 von Willebrand factor type A domain LIL_20049 PF13519 von Willebrand factor type A domain LIL_20050 PF07719 Tetratricopeptide repeat LIL_20050 PF13432 Tetratricopeptide repeat LIL_20051 PF13584 LIL_20051 LIL_20052 PF00183 Hsp90 protein LIL_20052 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20055 PF05787 Bacterial protein of unknown function (DUF839) LIL_20056 PF01740 STAS domain LIL_20057 PF01513 ATP-NAD kinase LIL_20058 PF13581 Histidine kinase-like ATPase domain LIL_20060 PF00487 LIL_20060 LIL_20062 PF03807 NADP oxidoreductase coenzyme F420-dependent LIL_20064 PF07600 LIL_20064 LIL_20065 PF03308 ArgK protein LIL_20066 PF01642 Methylmalonyl-CoA mutase LIL_20066 PF02310 B12 binding domain LIL_20070 PF13649 Methyltransferase domain LIL_20071 PF13174 Tetratricopeptide repeat LIL_20071 PF13181 Tetratricopeptide repeat LIL_20071 PF13899 Thioredoxin-like LIL_20072 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LIL_20074 PF13561 Enoyl-(Acyl carrier protein) reductase LIL_20075 PF00550 Phosphopantetheine attachment site LIL_20076 PF00035 Double-stranded RNA binding motif LIL_20076 PF14622 Ribonuclease-III-like LIL_20077 PF00293 NUDIX domain LIL_20078 PF01761 3-dehydroquinate synthase LIL_20079 PF00924 Mechanosensitive ion channel LIL_20081 PF03486 HI0933-like protein LIL_20084 PF13564 LIL_20084 LIL_20085 PF00501 AMP-binding enzyme LIL_20086 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_20087 PF08241 Methyltransferase domain LIL_20088 PF01522 Polysaccharide deacetylase LIL_20090 PF13242 HAD-hyrolase-like LIL_20090 PF13344 Haloacid dehalogenase-like hydrolase LIL_20091 PF13279 Thioesterase-like superfamily LIL_20092 PF00440 Bacterial regulatory proteins, tetR family LIL_20093 PF01022 Bacterial regulatory protein, arsR family LIL_20093 PF08241 Methyltransferase domain LIL_20094 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LIL_20094 PF05221 S-adenosyl-L-homocysteine hydrolase LIL_20095 PF00037 4Fe-4S binding domain LIL_20096 PF00809 Pterin binding enzyme LIL_20096 PF02310 B12 binding domain LIL_20096 PF02574 Homocysteine S-methyltransferase LIL_20096 PF02607 B12 binding domain LIL_20096 PF02965 Vitamin B12 dependent methionine synthase, activation domain LIL_20099 PF00365 Phosphofructokinase LIL_20100 PF01590 GAF domain LIL_20100 PF07228 Stage II sporulation protein E (SpoIIE) LIL_20100 PF13185 GAF domain LIL_20101 PF00696 Amino acid kinase family LIL_20102 PF13561 Enoyl-(Acyl carrier protein) reductase LIL_20103 PF05299 M61 glycyl aminopeptidase LIL_20104 PF00578 AhpC/TSA family LIL_20105 PF00211 Adenylate and Guanylate cyclase catalytic domain LIL_20105 PF07695 LIL_20105 LIL_20108 PF00106 short chain dehydrogenase LIL_20109 PF00589 Phage integrase family LIL_20109 PF13495 Phage integrase, N-terminal SAM-like domain LIL_20110 PF01202 Shikimate kinase LIL_20111 PF08668 HDOD domain LIL_20112 PF03975 CheD chemotactic sensory transduction LIL_20113 PF01963 LIL_20113 LIL_20114 PF03783 Curli production assembly/transport component CsgG LIL_20115 PF12833 Helix-turn-helix domain LIL_20116 PF12833 Helix-turn-helix domain LIL_20117 PF00563 EAL domain LIL_20119 PF01740 STAS domain LIL_20122 PF07228 Stage II sporulation protein E (SpoIIE) LIL_20123 PF04773 FecR protein LIL_20125 PF04773 FecR protein LIL_20126 PF04542 Sigma-70 region 2 LIL_20126 PF04545 Sigma-70, region 4 LIL_20127 PF05708 Orthopoxvirus protein of unknown function (DUF830) LIL_20130 PF00300 Histidine phosphatase superfamily (branch 1) LIL_20131 PF03186 LIL_20131 LIL_20132 PF00155 Aminotransferase class I and II LIL_20132 PF07685 CobB/CobQ-like glutamine amidotransferase domain LIL_20132 PF13500 AAA domain LIL_20133 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LIL_20134 PF01955 LIL_20134 LIL_20135 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LIL_20135 PF07685 CobB/CobQ-like glutamine amidotransferase domain LIL_20136 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LIL_20137 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_20138 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_20139 PF01890 Cobalamin synthesis G C-terminus LIL_20139 PF11760 Cobalamin synthesis G N-terminal LIL_20139 PF11761 LIL_20139 LIL_20140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_20141 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIL_20141 PF13847 Methyltransferase domain LIL_20142 PF02570 Precorrin-8X methylmutase LIL_20143 PF01888 CbiD LIL_20144 PF00970 Oxidoreductase FAD-binding domain LIL_20145 PF11483 Protein of unknown function (DUF3209) LIL_20146 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin LIL_20146 PF01903 CbiX LIL_20149 PF02719 Polysaccharide biosynthesis protein LIL_20149 PF13727 CoA-binding domain LIL_20152 PF01435 Peptidase family M48 LIL_20153 PF00156 Phosphoribosyl transferase domain LIL_20154 PF00595 PDZ domain (Also known as DHR or GLGF) LIL_20154 PF13365 Trypsin-like peptidase domain LIL_20158 PF01475 Ferric uptake regulator family LIL_20159 PF01126 Heme oxygenase LIL_20160 PF07690 Major Facilitator Superfamily LIL_20161 PF07600 LIL_20161 LIL_20162 PF00593 TonB dependent receptor LIL_20162 PF07715 TonB-dependent Receptor Plug Domain LIL_20163 PF14064 HmuY protein LIL_20167 PF02575 YbaB/EbfC DNA-binding family LIL_20169 PF05362 Lon protease (S16) C-terminal proteolytic domain LIL_20169 PF13654 AAA domain LIL_20170 PF02547 Queuosine biosynthesis protein LIL_20171 PF09594 LIL_20171 LIL_20172 PF00534 Glycosyl transferases group 1 LIL_20175 PF03062 LIL_20175 LIL_20177 PF03062 LIL_20177 LIL_20178 PF07611 LIL_20178 LIL_20179 PF03819 MazG nucleotide pyrophosphohydrolase domain LIL_20180 PF02472 Biopolymer transport protein ExbD/TolR LIL_20181 PF01618 LIL_20181 LIL_20182 PF01209 ubiE/COQ5 methyltransferase family LIL_20183 PF16130 LIL_20183 LIL_20184 PF13367 LIL_20184 LIL_20186 PF01258 Prokaryotic dksA/traR C4-type zinc finger LIL_20187 PF01527 Transposase LIL_20188 PF00665 Integrase core domain LIL_20189 PF05345 Putative Ig domain LIL_20189 PF07603 LIL_20189 LIL_20190 PF07603 LIL_20190 LIL_20191 PF12833 Helix-turn-helix domain LIL_20192 PF01609 Transposase DDE domain LIL_20192 PF05598 LIL_20192 LIL_20194 PF00072 Response regulator receiver domain LIL_20194 PF00563 EAL domain LIL_20195 PF00990 GGDEF domain LIL_20195 PF02743 Cache domain LIL_20196 PF00990 GGDEF domain LIL_20197 PF00072 Response regulator receiver domain LIL_20197 PF00512 His Kinase A (phospho-acceptor) domain LIL_20197 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20197 PF07695 LIL_20197 LIL_20198 PF04773 FecR protein LIL_20200 PF01734 Patatin-like phospholipase LIL_20201 PF00474 Sodium:solute symporter family LIL_20203 PF03783 Curli production assembly/transport component CsgG LIL_20205 PF00150 Cellulase (glycosyl hydrolase family 5) LIL_20206 PF01734 Patatin-like phospholipase LIL_20208 PF07690 Major Facilitator Superfamily LIL_20209 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LIL_20209 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LIL_20211 PF00112 Papain family cysteine protease LIL_20212 PF00563 EAL domain LIL_20213 PF01704 UTP--glucose-1-phosphate uridylyltransferase LIL_20216 PF12697 Alpha/beta hydrolase family LIL_20217 PF01758 Sodium Bile acid symporter family LIL_20218 PF00266 Aminotransferase class-V LIL_20219 PF02915 Rubrerythrin LIL_20220 PF07947 LIL_20220 LIL_20221 PF03741 LIL_20221 LIL_20222 PF01642 Methylmalonyl-CoA mutase LIL_20223 PF01642 Methylmalonyl-CoA mutase LIL_20223 PF02310 B12 binding domain LIL_20224 PF03308 ArgK protein LIL_20228 PF07715 TonB-dependent Receptor Plug Domain LIL_20230 PF01618 LIL_20230 LIL_20231 PF02472 Biopolymer transport protein ExbD/TolR LIL_20232 PF03544 Gram-negative bacterial TonB protein C-terminal LIL_20233 PF00149 Calcineurin-like phosphoesterase LIL_20234 PF01645 Conserved region in glutamate synthase LIL_20235 PF04893 LIL_20235 LIL_20236 PF13279 Thioesterase-like superfamily LIL_20238 PF00512 His Kinase A (phospho-acceptor) domain LIL_20238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20238 PF13188 PAS domain LIL_20238 PF13426 PAS domain LIL_20238 PF16927 LIL_20238 LIL_20239 PF00106 short chain dehydrogenase LIL_20240 PF00596 Class II Aldolase and Adducin N-terminal domain LIL_20241 PF03079 ARD/ARD' family LIL_20242 PF01132 Elongation factor P (EF-P) OB domain LIL_20242 PF08207 Elongation factor P (EF-P) KOW-like domain LIL_20242 PF09285 Elongation factor P, C-terminal LIL_20243 PF12849 PBP superfamily domain LIL_20244 PF12544 Lysine-2,3-aminomutase LIL_20244 PF13394 4Fe-4S single cluster domain LIL_20248 PF09835 LIL_20248 LIL_20250 PF07603 LIL_20250 LIL_20251 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LIL_20252 PF01564 Spermine/spermidine synthase LIL_20252 PF17284 LIL_20252 LIL_20253 PF02675 S-adenosylmethionine decarboxylase LIL_20254 PF02675 S-adenosylmethionine decarboxylase LIL_20255 PF10698 LIL_20255 LIL_20256 PF00842 Alanine racemase, C-terminal domain LIL_20256 PF01168 Alanine racemase, N-terminal domain LIL_20257 PF01553 Acyltransferase LIL_20259 PF03448 MgtE intracellular N domain LIL_20261 PF00512 His Kinase A (phospho-acceptor) domain LIL_20261 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20261 PF09084 NMT1/THI5 like LIL_20262 PF01464 Transglycosylase SLT domain LIL_20263 PF00440 Bacterial regulatory proteins, tetR family LIL_20263 PF01642 Methylmalonyl-CoA mutase LIL_20264 PF01642 Methylmalonyl-CoA mutase LIL_20264 PF02310 B12 binding domain LIL_20265 PF03308 ArgK protein LIL_20269 PF07715 TonB-dependent Receptor Plug Domain LIL_20271 PF01618 LIL_20271 LIL_20272 PF02472 Biopolymer transport protein ExbD/TolR LIL_20273 PF03544 Gram-negative bacterial TonB protein C-terminal LIL_20274 PF00149 Calcineurin-like phosphoesterase LIL_20275 PF01645 Conserved region in glutamate synthase LIL_20276 PF04893 LIL_20276 LIL_20277 PF13279 Thioesterase-like superfamily LIL_20279 PF00512 His Kinase A (phospho-acceptor) domain LIL_20279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20279 PF13188 PAS domain LIL_20279 PF13426 PAS domain LIL_20279 PF16927 LIL_20279 LIL_20280 PF00106 short chain dehydrogenase LIL_20281 PF00596 Class II Aldolase and Adducin N-terminal domain LIL_20282 PF03079 ARD/ARD' family LIL_20283 PF01132 Elongation factor P (EF-P) OB domain LIL_20283 PF08207 Elongation factor P (EF-P) KOW-like domain LIL_20283 PF09285 Elongation factor P, C-terminal LIL_20284 PF12849 PBP superfamily domain LIL_20285 PF12544 Lysine-2,3-aminomutase LIL_20285 PF13394 4Fe-4S single cluster domain LIL_20289 PF09835 LIL_20289 LIL_20291 PF07603 LIL_20291 LIL_20292 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LIL_20293 PF01564 Spermine/spermidine synthase LIL_20293 PF17284 LIL_20293 LIL_20294 PF02675 S-adenosylmethionine decarboxylase LIL_20295 PF02675 S-adenosylmethionine decarboxylase LIL_20296 PF10698 LIL_20296 LIL_20297 PF00842 Alanine racemase, C-terminal domain LIL_20297 PF01168 Alanine racemase, N-terminal domain LIL_20298 PF01553 Acyltransferase LIL_20300 PF03448 MgtE intracellular N domain LIL_20302 PF00512 His Kinase A (phospho-acceptor) domain LIL_20302 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIL_20302 PF09084 NMT1/THI5 like LIL_20303 PF01464 Transglycosylase SLT domain LIL_20304 PF00440 Bacterial regulatory proteins, tetR family LIL_20305 PF00330 Aconitase family (aconitate hydratase) LIL_20305 PF00694 Aconitase C-terminal domain LIL_20306 PF00691 OmpA family LIL_20307 PF00152 tRNA synthetases class II (D, K and N) LIL_20309 PF14106 LIL_20309 LIL_20310 PF00072 Response regulator receiver domain LIL_20310 PF00486 Transcriptional regulatory protein, C terminal LIL_20312 PF01329 Pterin 4 alpha carbinolamine dehydratase LIL_20315 PF05957 LIL_20315 LIL_20320 PF01548 LIL_20320 LIL_20320 PF02371 LIL_20320 LIL_20321 PF08570 LIL_20321 LIL_20324 PF00224 Pyruvate kinase, barrel domain LIL_20324 PF02887 Pyruvate kinase, alpha/beta domain LIL_20326 PF01118 Semialdehyde dehydrogenase, NAD binding domain LIL_20326 PF02774 Semialdehyde dehydrogenase, dimerisation domain LIL_20329 PF03062 LIL_20329 LIL_20334 PF02954 Bacterial regulatory protein, Fis family LIL_20335 PF13614 AAA domain LIL_20336 PF02195 ParB-like nuclease domain LIL_20337 PF13730 LIL_20337 LIL_30001 PF13614 AAA domain LIL_30002 PF11300 LIL_30002 LIL_30005 PF01344 Kelch motif LIL_30007 PF05593 LIL_30007 LIL_30015 PF12833 Helix-turn-helix domain LIL_30026 PF05284 LIL_30026 LIL_30027 PF02486 LIL_30027 LIL_30036 PF08291 Peptidase M15 LIL_30042 PF13539 D-alanyl-D-alanine carboxypeptidase LIL_30045 PF04014 Antidote-toxin recognition MazE LIL_30046 PF02452 PemK-like protein LIL_30050 PF00665 Integrase core domain LIL_30051 PF01527 Transposase LIL_30052 PF00072 Response regulator receiver domain LIL_30052 PF00563 EAL domain LIL_30056 PF07603 LIL_30056 LIL_30057 PF05534 LIL_30057 LIL_30058 PF07927 YcfA-like protein LIL_30059 PF12784 LIL_30059 LIL_30062 PF00665 Integrase core domain LIL_30063 PF01527 Transposase LIL_30064 PF04754 LIL_30064 LIL_30066 PF04542 Sigma-70 region 2 LIL_30067 PF13435 Cytochrome c554 and c-prime LIL_30068 PF08239 Bacterial SH3 domain LIL_40001 PF13614 AAA domain LIL_40002 PF02195 ParB-like nuclease domain LIL_40003 PF13730 LIL_40003 LIL_40007 PF03534 Salmonella virulence plasmid 65kDa B protein LIL_40007 PF05593 LIL_40007 LIL_40008 PF15569 LIL_40008 LIL_40009 PF13683 LIL_40009 LIL_40010 PF12833 Helix-turn-helix domain LIL_40014 PF16927 LIL_40014 LIL_40017 PF04221 RelB antitoxin LIL_40018 PF04754 LIL_40018 LIL_40019 PF00560 Leucine Rich Repeat LIL_40019 PF13855 Leucine rich repeat LIL_40022 PF04014 Antidote-toxin recognition MazE LIL_40023 PF02452 PemK-like protein LIL_40024 PF00665 Integrase core domain LIL_40025 PF01527 Transposase LIL_40032 PF00583 Acetyltransferase (GNAT) family LIL_40037 PF04754 LIL_40037 LIL_40038 PF13551 Winged helix-turn helix LIL_40044 PF00023 Ankyrin repeat LIL_40045 PF00132 Bacterial transferase hexapeptide (six repeats) LIL_40046 PF11185 LIL_40046 LIL_40047 PF12784 LIL_40047 LIL_40051 PF04754 LIL_40051 LIL_40054 PF04014 Antidote-toxin recognition MazE LIL_40055 PF02661 Fic/DOC family LIL_50001 PF13614 AAA domain LIL_50003 PF13730 LIL_50003 LIL_50007 PF01850 PIN domain LIL_50008 PF04014 Antidote-toxin recognition MazE LIL_50009 PF01381 Helix-turn-helix LIL_50010 PF01381 Helix-turn-helix LIL_50010 PF15919 LIL_50010 LIL_50011 PF07927 YcfA-like protein LIL_50012 PF02195 ParB-like nuclease domain LIL_50015 PF08291 Peptidase M15 LIL_50017 PF14301 LIL_50017 LIL_50033 PF11651 P22 coat protein - gene protein 5 LIL_50036 PF04466 Phage terminase large subunit LIL_50037 PF03592 Terminase small subunit LIL_50039 PF01844 HNH endonuclease LIL_50047 PF07505 LIL_50047 LIL_50052 PF05866 Endodeoxyribonuclease RusA LIL_50057 PF05565 LIL_50057 LIL_50058 PF13479 LIL_50058 LIL_50064 PF01381 Helix-turn-helix LIL_50065 PF10544 LIL_50065 LIL_50065 PF13250 LIL_50065 LIL_50066 PF05154 LIL_50066 LIL_50068 PF02481 DNA recombination-mediator protein A LIL_50069 PF04255 Protein of unknown function (DUF433) LIL_50072 PF16927 LIL_50072