LIL_10001 SM00382 ATPases associated with a variety of cellular activities LIL_10001 SM00760 Bacterial dnaA protein helix-turn-helix domain LIL_10003 SM00480 DNA polymerase III beta subunit LIL_10006 SM00387 Histidine kinase-like ATPases LIL_10006 SM00433 TopoisomeraseII LIL_10007 SM00434 DNA Topoisomerase IV LIL_10021 SM00191 Integrin alpha (beta-propellor repeats). LIL_10025 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_10037 SM00955 LIL_10037 LIL_10040 SM00028 Tetratricopeptide repeats LIL_10040 SM00671 Sel1-like repeats. LIL_10042 SM00116 Domain in cystathionine beta-synthase and other proteins. LIL_10045 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LIL_10045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_10048 SM01002 Alanine dehydrogenase/PNT, C-terminal domain LIL_10048 SM01003 Alanine dehydrogenase/PNT, N-terminal domain LIL_10049 SM00014 Acid phosphatase homologues LIL_10054 SM00028 Tetratricopeptide repeats LIL_10055 SM00028 Tetratricopeptide repeats LIL_10062 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LIL_10062 SM00331 Sigma factor PP2C-like phosphatases LIL_10065 SM00028 Tetratricopeptide repeats LIL_10065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LIL_10065 SM00331 Sigma factor PP2C-like phosphatases LIL_10077 SM00563 Phosphate acyltransferases LIL_10093 SM00567 E-Z type HEAT repeats LIL_10095 SM00849 Metallo-beta-lactamase superfamily LIL_10102 SM00387 Histidine kinase-like ATPases LIL_10105 SM00937 LIL_10105 LIL_10116 SM00756 LIL_10116 LIL_10121 SM00387 Histidine kinase-like ATPases LIL_10126 SM00028 Tetratricopeptide repeats LIL_10128 SM00849 Metallo-beta-lactamase superfamily LIL_10133 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LIL_10133 SM00382 ATPases associated with a variety of cellular activities LIL_10136 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain LIL_10137 SM00382 ATPases associated with a variety of cellular activities LIL_10143 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LIL_10143 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LIL_10153 SM01234 LIL_10153 LIL_10155 SM00393 Putative single-stranded nucleic acids-binding domain LIL_10155 SM01245 LIL_10155 LIL_10157 SM00919 Malic enzyme, NAD binding domain LIL_10157 SM01274 LIL_10157 LIL_10168 SM00530 Helix-turn-helix XRE-family like proteins LIL_10214 SM01058 CarD-like/TRCF domain LIL_10215 SM00670 Large family of predicted nucleotide-binding domains LIL_10221 SM00845 GatB domain LIL_10222 SM00481 DNA polymerase alpha chain like domain LIL_10233 SM00382 ATPases associated with a variety of cellular activities LIL_10237 SM00100 Cyclic nucleotide-monophosphate binding domain LIL_10238 SM00478 endonuclease III LIL_10245 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_10247 SM00248 ankyrin repeats LIL_10251 SM00829 Enoylreductase LIL_10252 SM00116 Domain in cystathionine beta-synthase and other proteins. LIL_10253 SM00271 DnaJ molecular chaperone homology domain LIL_10266 SM00100 Cyclic nucleotide-monophosphate binding domain LIL_10269 SM00257 Lysin motif LIL_10270 SM00838 Elongation factor G C-terminus LIL_10270 SM00889 Elongation factor G, domain IV LIL_10273 SM00530 Helix-turn-helix XRE-family like proteins LIL_10274 SM00530 Helix-turn-helix XRE-family like proteins LIL_10281 SM00829 Enoylreductase LIL_10283 SM00363 S4 RNA-binding domain LIL_10303 SM00028 Tetratricopeptide repeats LIL_10327 SM00028 Tetratricopeptide repeats LIL_10334 SM00448 cheY-homologous receiver domain LIL_10337 SM00729 Elongator protein 3, MiaB family, Radical SAM LIL_10338 SM00028 Tetratricopeptide repeats LIL_10340 SM00382 ATPases associated with a variety of cellular activities LIL_10340 SM01086 C-terminal, D2-small domain, of ClpB protein LIL_10351 SM00382 ATPases associated with a variety of cellular activities LIL_10354 SM00650 Ribosomal RNA adenine dimethylases LIL_10360 SM00893 Electron transfer flavoprotein domain LIL_10361 SM00893 Electron transfer flavoprotein domain LIL_10378 SM00871 Bacterial transcription activator, effector binding domain LIL_10389 SM00382 ATPases associated with a variety of cellular activities LIL_10390 SM00450 Rhodanese Homology Domain LIL_10404 SM00028 Tetratricopeptide repeats LIL_10404 SM00671 Sel1-like repeats. LIL_10431 SM01400 LIL_10431 LIL_10434 SM00382 ATPases associated with a variety of cellular activities LIL_10442 SM00938 Nitrogen regulatory protein P-II LIL_10464 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_10464 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LIL_10470 SM00635 Bacterial Ig-like domain 2 LIL_10471 SM00635 Bacterial Ig-like domain 2 LIL_10476 SM00937 LIL_10476 LIL_10478 SM01209 LIL_10478 LIL_10478 SM01210 LIL_10478 LIL_10481 SM00360 RNA recognition motif LIL_10495 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. LIL_10514 SM00318 Staphylococcal nuclease homologues LIL_10521 SM00382 ATPases associated with a variety of cellular activities LIL_10527 SM00271 DnaJ molecular chaperone homology domain LIL_10532 SM00740 LIL_10532 LIL_10536 SM00382 ATPases associated with a variety of cellular activities LIL_10543 SM00382 ATPases associated with a variety of cellular activities LIL_10554 SM00986 Uracil DNA glycosylase superfamily LIL_10554 SM00987 UreE urease accessory protein, C-terminal domain LIL_10559 SM00387 Histidine kinase-like ATPases LIL_10559 SM00388 His Kinase A (phosphoacceptor) domain LIL_10559 SM00448 cheY-homologous receiver domain LIL_10565 SM00448 cheY-homologous receiver domain LIL_10588 SM00382 ATPases associated with a variety of cellular activities LIL_10594 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs LIL_10594 SM00474 3'-5' exonuclease LIL_10594 SM00475 5'-3' exonuclease LIL_10594 SM00482 DNA polymerase A domain LIL_10597 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_10602 SM00028 Tetratricopeptide repeats LIL_10607 SM00028 Tetratricopeptide repeats LIL_10609 SM00331 Sigma factor PP2C-like phosphatases LIL_10619 SM00382 ATPases associated with a variety of cellular activities LIL_10619 SM00464 Found in ATP-dependent protease La (LON) LIL_10620 SM00028 Tetratricopeptide repeats LIL_10627 SM00752 Horizontally Transferred TransMembrane Domain LIL_10651 SM00052 Putative diguanylate phosphodiesterase LIL_10675 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LIL_10682 SM00382 ATPases associated with a variety of cellular activities LIL_10684 SM00028 Tetratricopeptide repeats LIL_10686 SM00382 ATPases associated with a variety of cellular activities LIL_10689 SM00331 Sigma factor PP2C-like phosphatases LIL_10689 SM00448 cheY-homologous receiver domain LIL_10692 SM01211 LIL_10692 LIL_10697 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_10702 SM00773 Proposed nucleic acid binding domain LIL_10712 SM00822 LIL_10712 LIL_10739 SM00646 LIL_10739 LIL_10740 SM00487 DEAD-like helicases superfamily LIL_10740 SM00490 helicase superfamily c-terminal domain LIL_10752 SM00904 Riboflavin kinase LIL_10753 SM00331 Sigma factor PP2C-like phosphatases LIL_10754 SM00331 Sigma factor PP2C-like phosphatases LIL_10765 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. LIL_10765 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LIL_10766 SM00649 Ribosomal protein L11/L12 LIL_10771 SM00663 RNA polymerase I subunit A N-terminus LIL_10778 SM00867 YceI-like domain LIL_10781 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LIL_10809 SM00100 Cyclic nucleotide-monophosphate binding domain LIL_10878 SM00855 Phosphoglycerate mutase family LIL_10880 SM00387 Histidine kinase-like ATPases LIL_10883 SM00829 Enoylreductase LIL_10901 SM00612 LIL_10901 LIL_10904 SM00342 helix_turn_helix, arabinose operon control protein LIL_10912 SM00364 Leucine-rich repeats, bacterial type LIL_10912 SM00365 Leucine-rich repeat, SDS22-like subfamily LIL_10912 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_10913 SM00364 Leucine-rich repeats, bacterial type LIL_10913 SM00365 Leucine-rich repeat, SDS22-like subfamily LIL_10913 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_10914 SM00364 Leucine-rich repeats, bacterial type LIL_10914 SM00365 Leucine-rich repeat, SDS22-like subfamily LIL_10914 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_10915 SM00364 Leucine-rich repeats, bacterial type LIL_10915 SM00365 Leucine-rich repeat, SDS22-like subfamily LIL_10915 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_10916 SM00364 Leucine-rich repeats, bacterial type LIL_10916 SM00365 Leucine-rich repeat, SDS22-like subfamily LIL_10916 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_10926 SM01130 LIL_10926 LIL_10946 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_10946 SM01080 LIL_10946 LIL_10947 SM00861 Transketolase, pyrimidine binding domain LIL_10948 SM00028 Tetratricopeptide repeats LIL_10977 SM00357 Cold shock protein domain LIL_10977 SM00382 ATPases associated with a variety of cellular activities LIL_10977 SM00959 Rho termination factor, N-terminal domain LIL_10984 SM00028 Tetratricopeptide repeats LIL_10988 SM00091 PAS domain LIL_10988 SM00387 Histidine kinase-like ATPases LIL_10988 SM00448 cheY-homologous receiver domain LIL_10991 SM00257 Lysin motif LIL_11016 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_11031 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LIL_11038 SM00834 Putative regulatory protein LIL_11039 SM00287 Bacterial SH3 domain homologues LIL_11041 SM00881 CoA binding domain LIL_11045 SM00729 Elongator protein 3, MiaB family, Radical SAM LIL_11048 SM00788 Adenylosuccinate synthetase LIL_11050 SM00563 Phosphate acyltransferases LIL_11073 SM00530 Helix-turn-helix XRE-family like proteins LIL_11074 SM00729 Elongator protein 3, MiaB family, Radical SAM LIL_11077 SM01323 LIL_11077 LIL_11092 SM00382 ATPases associated with a variety of cellular activities LIL_11097 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LIL_11097 SM00220 Serine/Threonine protein kinases, catalytic domain LIL_11097 SM00331 Sigma factor PP2C-like phosphatases LIL_11105 SM00062 Bacterial periplasmic substrate-binding proteins LIL_11106 SM00853 MutL C terminal dimerisation domain LIL_11106 SM01340 LIL_11106 LIL_11110 SM00382 ATPases associated with a variety of cellular activities LIL_11115 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_11116 SM00052 Putative diguanylate phosphodiesterase LIL_11116 SM00267 diguanylate cyclase LIL_11116 SM00448 cheY-homologous receiver domain LIL_11117 SM00448 cheY-homologous receiver domain LIL_11121 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_11125 SM00331 Sigma factor PP2C-like phosphatases LIL_11139 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_11144 SM00849 Metallo-beta-lactamase superfamily LIL_11148 SM00861 Transketolase, pyrimidine binding domain LIL_11155 SM00028 Tetratricopeptide repeats LIL_11158 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain LIL_11159 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LIL_11167 SM00260 Two component signalling adaptor domain LIL_11168 SM00073 Histidine Phosphotransfer domain LIL_11168 SM00260 Two component signalling adaptor domain LIL_11168 SM00387 Histidine kinase-like ATPases LIL_11168 SM01231 LIL_11168 LIL_11169 SM00448 cheY-homologous receiver domain LIL_11170 SM00448 cheY-homologous receiver domain LIL_11173 SM00830 Chorismate mutase type II LIL_11177 SM00316 Ribosomal protein S1-like RNA-binding domain LIL_11196 SM00382 ATPases associated with a variety of cellular activities LIL_11204 SM00248 ankyrin repeats LIL_11207 SM01207 LIL_11207 LIL_11215 SM01230 LIL_11215 LIL_11221 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_11229 SM00248 ankyrin repeats LIL_11234 SM00100 Cyclic nucleotide-monophosphate binding domain LIL_11241 SM00448 cheY-homologous receiver domain LIL_11242 SM00387 Histidine kinase-like ATPases LIL_11242 SM00388 His Kinase A (phosphoacceptor) domain LIL_11245 SM00854 Bacterial capsule synthesis protein PGA_cap LIL_11247 SM00364 Leucine-rich repeats, bacterial type LIL_11247 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_11250 SM00248 ankyrin repeats LIL_11260 SM00478 endonuclease III LIL_11265 SM00838 Elongation factor G C-terminus LIL_11292 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_11292 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LIL_11295 SM00028 Tetratricopeptide repeats LIL_11295 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LIL_11295 SM00220 Serine/Threonine protein kinases, catalytic domain LIL_11295 SM00331 Sigma factor PP2C-like phosphatases LIL_11297 SM00882 Coenzyme A transferase LIL_11300 SM00331 Sigma factor PP2C-like phosphatases LIL_11300 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain LIL_11302 SM00825 Beta-ketoacyl synthase LIL_11303 SM00448 cheY-homologous receiver domain LIL_11308 SM00382 ATPases associated with a variety of cellular activities LIL_11310 SM00028 Tetratricopeptide repeats LIL_11316 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LIL_11317 SM00530 Helix-turn-helix XRE-family like proteins LIL_11323 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_11323 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LIL_11325 SM00100 Cyclic nucleotide-monophosphate binding domain LIL_11326 SM00091 PAS domain LIL_11326 SM00387 Histidine kinase-like ATPases LIL_11326 SM00388 His Kinase A (phosphoacceptor) domain LIL_11327 SM00448 cheY-homologous receiver domain LIL_11328 SM00387 Histidine kinase-like ATPases LIL_11328 SM00388 His Kinase A (phosphoacceptor) domain LIL_11329 SM00052 Putative diguanylate phosphodiesterase LIL_11329 SM00448 cheY-homologous receiver domain LIL_11338 SM00867 YceI-like domain LIL_11342 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_11348 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LIL_11348 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LIL_11348 SM00091 PAS domain LIL_11348 SM00387 Histidine kinase-like ATPases LIL_11349 SM00028 Tetratricopeptide repeats LIL_11371 SM00382 ATPases associated with a variety of cellular activities LIL_11401 SM00878 Biotin carboxylase C-terminal domain LIL_11422 SM00729 Elongator protein 3, MiaB family, Radical SAM LIL_11424 SM00267 diguanylate cyclase LIL_11425 SM00909 Sporulation and spore germination LIL_11429 SM01236 LIL_11429 LIL_11433 SM00981 LIL_11433 LIL_11437 SM01011 Aminopeptidase P, N-terminal domain LIL_11462 SM00883 Chaperonin 10 Kd subunit LIL_11468 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_11474 SM00470 ParB-like nuclease domain LIL_11476 SM00861 Transketolase, pyrimidine binding domain LIL_11497 SM00382 ATPases associated with a variety of cellular activities LIL_11497 SM00962 SRP54-type protein, GTPase domain LIL_11501 SM01245 LIL_11501 LIL_11505 SM00072 Guanylate kinase homologues. LIL_11511 SM00382 ATPases associated with a variety of cellular activities LIL_11523 SM00899 LIL_11523 LIL_11527 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_11528 SM00028 Tetratricopeptide repeats LIL_11534 SM00729 Elongator protein 3, MiaB family, Radical SAM LIL_11539 SM00382 ATPases associated with a variety of cellular activities LIL_11539 SM00994 ClpX C4-type zinc finger LIL_11539 SM01086 C-terminal, D2-small domain, of ClpB protein LIL_11544 SM00360 RNA recognition motif LIL_11546 SM00387 Histidine kinase-like ATPases LIL_11546 SM00388 His Kinase A (phosphoacceptor) domain LIL_11547 SM00091 PAS domain LIL_11547 SM00331 Sigma factor PP2C-like phosphatases LIL_11552 SM00100 Cyclic nucleotide-monophosphate binding domain LIL_11553 SM00091 PAS domain LIL_11553 SM00387 Histidine kinase-like ATPases LIL_11553 SM00388 His Kinase A (phosphoacceptor) domain LIL_11553 SM00448 cheY-homologous receiver domain LIL_11554 SM00091 PAS domain LIL_11554 SM00387 Histidine kinase-like ATPases LIL_11555 SM00382 ATPases associated with a variety of cellular activities LIL_11558 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_11558 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LIL_11560 SM00387 Histidine kinase-like ATPases LIL_11561 SM00091 PAS domain LIL_11561 SM00387 Histidine kinase-like ATPases LIL_11561 SM00448 cheY-homologous receiver domain LIL_11565 SM00267 diguanylate cyclase LIL_11565 SM00448 cheY-homologous receiver domain LIL_11578 SM00487 DEAD-like helicases superfamily LIL_11578 SM00490 helicase superfamily c-terminal domain LIL_11578 SM00982 LIL_11578 LIL_11578 SM01058 CarD-like/TRCF domain LIL_11606 SM00100 Cyclic nucleotide-monophosphate binding domain LIL_11606 SM00419 helix_turn_helix, cAMP Regulatory protein LIL_11617 SM00382 ATPases associated with a variety of cellular activities LIL_11626 SM00364 Leucine-rich repeats, bacterial type LIL_11626 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_11627 SM00364 Leucine-rich repeats, bacterial type LIL_11627 SM00365 Leucine-rich repeat, SDS22-like subfamily LIL_11627 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_11628 SM00364 Leucine-rich repeats, bacterial type LIL_11628 SM00365 Leucine-rich repeat, SDS22-like subfamily LIL_11628 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_11635 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LIL_11635 SM00331 Sigma factor PP2C-like phosphatases LIL_11638 SM00878 Biotin carboxylase C-terminal domain LIL_11641 SM00448 cheY-homologous receiver domain LIL_11643 SM00260 Two component signalling adaptor domain LIL_11644 SM00091 PAS domain LIL_11644 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_11645 SM00073 Histidine Phosphotransfer domain LIL_11645 SM00260 Two component signalling adaptor domain LIL_11645 SM00387 Histidine kinase-like ATPases LIL_11645 SM01231 LIL_11645 LIL_11647 SM00448 cheY-homologous receiver domain LIL_11648 SM00448 cheY-homologous receiver domain LIL_11649 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LIL_11649 SM00091 PAS domain LIL_11649 SM00387 Histidine kinase-like ATPases LIL_11649 SM00388 His Kinase A (phosphoacceptor) domain LIL_11657 SM00464 Found in ATP-dependent protease La (LON) LIL_11664 SM00382 ATPases associated with a variety of cellular activities LIL_11668 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LIL_11668 SM00387 Histidine kinase-like ATPases LIL_11668 SM00388 His Kinase A (phosphoacceptor) domain LIL_11669 SM00382 ATPases associated with a variety of cellular activities LIL_11669 SM00448 cheY-homologous receiver domain LIL_11671 SM00487 DEAD-like helicases superfamily LIL_11673 SM00740 LIL_11673 LIL_11688 SM00257 Lysin motif LIL_11691 SM00382 ATPases associated with a variety of cellular activities LIL_11716 SM00917 LeuA allosteric (dimerisation) domain LIL_11720 SM00382 ATPases associated with a variety of cellular activities LIL_11720 SM01086 C-terminal, D2-small domain, of ClpB protein LIL_11733 SM00478 endonuclease III LIL_11736 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LIL_11740 SM00382 ATPases associated with a variety of cellular activities LIL_11769 SM00729 Elongator protein 3, MiaB family, Radical SAM LIL_11770 SM00363 S4 RNA-binding domain LIL_11777 SM00798 AICARFT/IMPCHase bienzyme LIL_11777 SM00851 MGS-like domain LIL_11783 SM00507 HNH nucleases LIL_11785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LIL_11790 SM00028 Tetratricopeptide repeats LIL_11793 SM00248 ankyrin repeats LIL_11810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_11822 SM00400 zinc finger LIL_11822 SM00493 LIL_11822 LIL_11830 SM00387 Histidine kinase-like ATPases LIL_11830 SM00388 His Kinase A (phosphoacceptor) domain LIL_11830 SM00448 cheY-homologous receiver domain LIL_11831 SM00091 PAS domain LIL_11831 SM00387 Histidine kinase-like ATPases LIL_11831 SM00388 His Kinase A (phosphoacceptor) domain LIL_11831 SM00448 cheY-homologous receiver domain LIL_11833 SM00831 Cation transporter/ATPase, N-terminus LIL_11835 SM00116 Domain in cystathionine beta-synthase and other proteins. LIL_11835 SM00924 MgtE intracellular N domain LIL_11839 SM00382 ATPases associated with a variety of cellular activities LIL_11844 SM00636 LIL_11844 LIL_11850 SM00917 LeuA allosteric (dimerisation) domain LIL_11851 SM00644 LIL_11851 LIL_11861 SM00382 ATPases associated with a variety of cellular activities LIL_11863 SM01359 LIL_11863 LIL_11863 SM01360 LIL_11863 LIL_11869 SM00382 ATPases associated with a variety of cellular activities LIL_11870 SM00859 Semialdehyde dehydrogenase, NAD binding domain LIL_11873 SM00100 Cyclic nucleotide-monophosphate binding domain LIL_11878 SM00155 Phospholipase D. Active site motifs. LIL_11881 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LIL_11881 SM00465 GIY-YIG type nucleases (URI domain) LIL_11884 SM00478 endonuclease III LIL_11892 SM01329 LIL_11892 LIL_11893 SM00448 cheY-homologous receiver domain LIL_11898 SM00533 DNA-binding domain of DNA mismatch repair MUTS family LIL_11898 SM00534 ATPase domain of DNA mismatch repair MUTS family LIL_11902 SM00729 Elongator protein 3, MiaB family, Radical SAM LIL_11902 SM00876 Biotin and Thiamin Synthesis associated domain LIL_11916 SM00487 DEAD-like helicases superfamily LIL_11916 SM00490 helicase superfamily c-terminal domain LIL_11922 SM00331 Sigma factor PP2C-like phosphatases LIL_11926 SM00849 Metallo-beta-lactamase superfamily LIL_11928 SM00849 Metallo-beta-lactamase superfamily LIL_11930 SM00382 ATPases associated with a variety of cellular activities LIL_11938 SM00382 ATPases associated with a variety of cellular activities LIL_11938 SM01086 C-terminal, D2-small domain, of ClpB protein LIL_11943 SM00382 ATPases associated with a variety of cellular activities LIL_11947 SM00240 Forkhead associated domain LIL_11948 SM00382 ATPases associated with a variety of cellular activities LIL_11964 SM01235 LIL_11964 LIL_11966 SM00244 prohibitin homologues LIL_11967 SM00244 prohibitin homologues LIL_11970 SM00382 ATPases associated with a variety of cellular activities LIL_11981 SM00382 ATPases associated with a variety of cellular activities LIL_11994 SM00138 Methyltransferase, chemotaxis proteins LIL_12005 SM00244 prohibitin homologues LIL_12018 SM00387 Histidine kinase-like ATPases LIL_12018 SM00388 His Kinase A (phosphoacceptor) domain LIL_12019 SM00448 cheY-homologous receiver domain LIL_12019 SM00862 Transcriptional regulatory protein, C terminal LIL_12021 SM00861 Transketolase, pyrimidine binding domain LIL_12040 SM00116 Domain in cystathionine beta-synthase and other proteins. LIL_12040 SM01240 LIL_12040 LIL_12042 SM00052 Putative diguanylate phosphodiesterase LIL_12065 SM00957 SecA DEAD-like domain LIL_12065 SM00958 SecA preprotein cross-linking domain LIL_12075 SM01192 LIL_12075 LIL_12075 SM01193 LIL_12075 LIL_12078 SM00448 cheY-homologous receiver domain LIL_12097 SM00100 Cyclic nucleotide-monophosphate binding domain LIL_12097 SM00849 Metallo-beta-lactamase superfamily LIL_12103 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. LIL_12104 SM00360 RNA recognition motif LIL_12105 SM01043 Bacterial transcriptional activator domain LIL_12109 SM00028 Tetratricopeptide repeats LIL_12129 SM00838 Elongation factor G C-terminus LIL_12135 SM00530 Helix-turn-helix XRE-family like proteins LIL_12136 SM00382 ATPases associated with a variety of cellular activities LIL_12136 SM01086 C-terminal, D2-small domain, of ClpB protein LIL_12138 SM00487 DEAD-like helicases superfamily LIL_12138 SM00491 LIL_12138 LIL_12148 SM00840 LIL_12148 LIL_12149 SM00967 RNA 2'-O ribose methyltransferase substrate binding LIL_12151 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LIL_12151 SM00091 PAS domain LIL_12151 SM00387 Histidine kinase-like ATPases LIL_12152 SM01060 LIL_12152 LIL_12153 SM00248 ankyrin repeats LIL_12157 SM01126 LIL_12157 LIL_12190 SM00387 Histidine kinase-like ATPases LIL_12190 SM00388 His Kinase A (phosphoacceptor) domain LIL_12190 SM00448 cheY-homologous receiver domain LIL_12191 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LIL_12191 SM00387 Histidine kinase-like ATPases LIL_12191 SM00388 His Kinase A (phosphoacceptor) domain LIL_12191 SM00448 cheY-homologous receiver domain LIL_12193 SM00138 Methyltransferase, chemotaxis proteins LIL_12194 SM00563 Phosphate acyltransferases LIL_12197 SM00347 helix_turn_helix multiple antibiotic resistance protein LIL_12199 SM01152 LIL_12199 LIL_12210 SM00382 ATPases associated with a variety of cellular activities LIL_12211 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain LIL_12211 SM00437 Bacterial DNA topoisomerase I DNA-binding domain LIL_12211 SM00493 LIL_12211 LIL_12218 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LIL_12218 SM00091 PAS domain LIL_12218 SM00387 Histidine kinase-like ATPases LIL_12218 SM00388 His Kinase A (phosphoacceptor) domain LIL_12219 SM00448 cheY-homologous receiver domain LIL_12220 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LIL_12229 SM00387 Histidine kinase-like ATPases LIL_12229 SM00388 His Kinase A (phosphoacceptor) domain LIL_12230 SM00448 cheY-homologous receiver domain LIL_12233 SM00852 Probable molybdopterin binding domain LIL_12234 SM00836 DALR anticodon binding domain LIL_12234 SM01016 Arginyl tRNA synthetase N terminal dom LIL_12239 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LIL_12243 SM00382 ATPases associated with a variety of cellular activities LIL_12248 SM00854 Bacterial capsule synthesis protein PGA_cap LIL_12249 SM00248 ankyrin repeats LIL_12290 SM00116 Domain in cystathionine beta-synthase and other proteins. LIL_12295 SM00858 LIL_12295 LIL_12301 SM00858 LIL_12301 LIL_12305 SM00382 ATPases associated with a variety of cellular activities LIL_12317 SM00861 Transketolase, pyrimidine binding domain LIL_12344 SM00710 Parallel beta-helix repeats LIL_12360 SM01133 LIL_12360 LIL_12361 SM00364 Leucine-rich repeats, bacterial type LIL_12361 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_12363 SM00091 PAS domain LIL_12363 SM00388 His Kinase A (phosphoacceptor) domain LIL_12363 SM00448 cheY-homologous receiver domain LIL_12364 SM00116 Domain in cystathionine beta-synthase and other proteins. LIL_12368 SM00260 Two component signalling adaptor domain LIL_12378 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LIL_12378 SM00245 tail specific protease LIL_12388 SM00191 Integrin alpha (beta-propellor repeats). LIL_12390 SM00860 SMI1 / KNR4 family LIL_12396 SM00363 S4 RNA-binding domain LIL_12398 SM01209 LIL_12398 LIL_12398 SM01240 LIL_12398 LIL_12402 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LIL_12402 SM00267 diguanylate cyclase LIL_12417 SM00642 Alpha-amylase domain LIL_12419 SM01001 AIR carboxylase LIL_12422 SM00984 UDP binding domain LIL_12423 SM00382 ATPases associated with a variety of cellular activities LIL_12432 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LIL_12432 SM00245 tail specific protease LIL_12449 SM00364 Leucine-rich repeats, bacterial type LIL_12449 SM00365 Leucine-rich repeat, SDS22-like subfamily LIL_12449 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_12465 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain LIL_12475 SM00530 Helix-turn-helix XRE-family like proteins LIL_12482 SM00903 Flavin reductase like domain LIL_12488 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LIL_12489 SM00382 ATPases associated with a variety of cellular activities LIL_12490 SM00474 3'-5' exonuclease LIL_12494 SM00331 Sigma factor PP2C-like phosphatases LIL_12494 SM00448 cheY-homologous receiver domain LIL_12498 SM00091 PAS domain LIL_12498 SM00267 diguanylate cyclase LIL_12499 SM00091 PAS domain LIL_12499 SM00267 diguanylate cyclase LIL_12500 SM00091 PAS domain LIL_12500 SM00267 diguanylate cyclase LIL_12501 SM00091 PAS domain LIL_12501 SM00267 diguanylate cyclase LIL_12502 SM00091 PAS domain LIL_12502 SM00267 diguanylate cyclase LIL_12503 SM00091 PAS domain LIL_12505 SM00091 PAS domain LIL_12505 SM00267 diguanylate cyclase LIL_12511 SM00612 LIL_12511 LIL_12515 SM00450 Rhodanese Homology Domain LIL_12520 SM00448 cheY-homologous receiver domain LIL_12523 SM00014 Acid phosphatase homologues LIL_12524 SM00563 Phosphate acyltransferases LIL_12531 SM00364 Leucine-rich repeats, bacterial type LIL_12531 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_12532 SM00364 Leucine-rich repeats, bacterial type LIL_12532 SM00365 Leucine-rich repeat, SDS22-like subfamily LIL_12532 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_12533 SM00364 Leucine-rich repeats, bacterial type LIL_12533 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_12535 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_12549 SM00382 ATPases associated with a variety of cellular activities LIL_12562 SM00641 Glycosyl hydrolases family 25 LIL_12569 SM00382 ATPases associated with a variety of cellular activities LIL_12569 SM00843 LIL_12569 LIL_12580 SM00364 Leucine-rich repeats, bacterial type LIL_12580 SM00365 Leucine-rich repeat, SDS22-like subfamily LIL_12580 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_12580 SM00773 Proposed nucleic acid binding domain LIL_12581 SM00248 ankyrin repeats LIL_12584 SM00773 Proposed nucleic acid binding domain LIL_12586 SM00287 Bacterial SH3 domain homologues LIL_12587 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_12595 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LIL_12603 SM00028 Tetratricopeptide repeats LIL_12610 SM00635 Bacterial Ig-like domain 2 LIL_12615 SM00998 Adenylosuccinate lyase C-terminus LIL_12619 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LIL_12619 SM00954 Region found in RelA / SpoT proteins LIL_12640 SM00052 Putative diguanylate phosphodiesterase LIL_12643 SM00448 cheY-homologous receiver domain LIL_12643 SM00862 Transcriptional regulatory protein, C terminal LIL_12644 SM00387 Histidine kinase-like ATPases LIL_12644 SM00388 His Kinase A (phosphoacceptor) domain LIL_12648 SM00220 Serine/Threonine protein kinases, catalytic domain LIL_12648 SM00331 Sigma factor PP2C-like phosphatases LIL_12654 SM00631 LIL_12654 LIL_12658 SM00450 Rhodanese Homology Domain LIL_12659 SM00342 helix_turn_helix, arabinose operon control protein LIL_12676 SM00829 Enoylreductase LIL_12683 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. LIL_12685 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LIL_12685 SM00331 Sigma factor PP2C-like phosphatases LIL_12687 SM00382 ATPases associated with a variety of cellular activities LIL_12695 SM00490 helicase superfamily c-terminal domain LIL_12704 SM00487 DEAD-like helicases superfamily LIL_12709 SM00849 Metallo-beta-lactamase superfamily LIL_12710 SM00448 cheY-homologous receiver domain LIL_12711 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LIL_12711 SM00091 PAS domain LIL_12711 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LIL_12711 SM00387 Histidine kinase-like ATPases LIL_12730 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_12730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LIL_12744 SM00219 Tyrosine kinase, catalytic domain LIL_12748 SM00966 SpoVT / AbrB like domain LIL_12756 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_12756 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LIL_12763 SM00773 Proposed nucleic acid binding domain LIL_12764 SM00773 Proposed nucleic acid binding domain LIL_12773 SM00382 ATPases associated with a variety of cellular activities LIL_12777 SM00487 DEAD-like helicases superfamily LIL_12777 SM00490 helicase superfamily c-terminal domain LIL_12786 SM00347 helix_turn_helix multiple antibiotic resistance protein LIL_12792 SM00316 Ribosomal protein S1-like RNA-binding domain LIL_12792 SM00322 K homology RNA-binding domain LIL_12793 SM01387 LIL_12793 LIL_12797 SM00322 K homology RNA-binding domain LIL_12821 SM00028 Tetratricopeptide repeats LIL_12823 SM00851 MGS-like domain LIL_12828 SM00347 helix_turn_helix multiple antibiotic resistance protein LIL_12836 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LIL_12849 SM00364 Leucine-rich repeats, bacterial type LIL_12849 SM00365 Leucine-rich repeat, SDS22-like subfamily LIL_12849 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_12897 SM00421 helix_turn_helix, Lux Regulon LIL_12897 SM00448 cheY-homologous receiver domain LIL_12902 SM00382 ATPases associated with a variety of cellular activities LIL_12903 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LIL_12908 SM00028 Tetratricopeptide repeats LIL_12922 SM00967 RNA 2'-O ribose methyltransferase substrate binding LIL_12941 SM00662 RNA polymerases D LIL_12942 SM00363 S4 RNA-binding domain LIL_12942 SM01390 LIL_12942 LIL_12945 SM00316 Ribosomal protein S1-like RNA-binding domain LIL_12955 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LIL_12956 SM01374 LIL_12956 LIL_12960 SM00322 K homology RNA-binding domain LIL_12963 SM01382 LIL_12963 LIL_12963 SM01383 LIL_12963 LIL_12967 SM01403 LIL_12967 LIL_12969 SM00838 Elongation factor G C-terminus LIL_12976 SM00851 MGS-like domain LIL_12976 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LIL_12991 SM00364 Leucine-rich repeats, bacterial type LIL_12991 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_12993 SM00364 Leucine-rich repeats, bacterial type LIL_12993 SM00365 Leucine-rich repeat, SDS22-like subfamily LIL_12993 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_12993 SM00773 Proposed nucleic acid binding domain LIL_12994 SM00382 ATPases associated with a variety of cellular activities LIL_12996 SM00327 von Willebrand factor (vWF) type A domain LIL_13015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_13015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LIL_13016 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_13016 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LIL_13024 SM00849 Metallo-beta-lactamase superfamily LIL_13031 SM00507 HNH nucleases LIL_13033 SM00271 DnaJ molecular chaperone homology domain LIL_13038 SM00487 DEAD-like helicases superfamily LIL_13038 SM00490 helicase superfamily c-terminal domain LIL_13041 SM00316 Ribosomal protein S1-like RNA-binding domain LIL_13064 SM00487 DEAD-like helicases superfamily LIL_13064 SM00490 helicase superfamily c-terminal domain LIL_13064 SM00956 LIL_13064 LIL_13074 SM00864 Tubulin/FtsZ family, GTPase domain LIL_13074 SM00865 Tubulin/FtsZ family, C-terminal domain LIL_13075 SM00842 Cell division protein FtsA LIL_13080 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain LIL_13086 SM00871 Bacterial transcription activator, effector binding domain LIL_13103 SM00947 Carbonic anhydrase LIL_13115 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_13119 SM00248 ankyrin repeats LIL_13140 SM00636 LIL_13140 LIL_13149 SM00347 helix_turn_helix multiple antibiotic resistance protein LIL_13157 SM00530 Helix-turn-helix XRE-family like proteins LIL_13182 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_13186 SM00387 Histidine kinase-like ATPases LIL_13186 SM00388 His Kinase A (phosphoacceptor) domain LIL_13186 SM00448 cheY-homologous receiver domain LIL_13192 SM00387 Histidine kinase-like ATPases LIL_13193 SM00421 helix_turn_helix, Lux Regulon LIL_13193 SM00448 cheY-homologous receiver domain LIL_13199 SM00028 Tetratricopeptide repeats LIL_13204 SM00191 Integrin alpha (beta-propellor repeats). LIL_13205 SM00986 Uracil DNA glycosylase superfamily LIL_13205 SM00987 UreE urease accessory protein, C-terminal domain LIL_13213 SM00091 PAS domain LIL_13213 SM00387 Histidine kinase-like ATPases LIL_13213 SM00388 His Kinase A (phosphoacceptor) domain LIL_13213 SM00448 cheY-homologous receiver domain LIL_13214 SM00091 PAS domain LIL_13214 SM00387 Histidine kinase-like ATPases LIL_13214 SM00388 His Kinase A (phosphoacceptor) domain LIL_13218 SM00849 Metallo-beta-lactamase superfamily LIL_13220 SM00052 Putative diguanylate phosphodiesterase LIL_13220 SM00267 diguanylate cyclase LIL_13225 SM00342 helix_turn_helix, arabinose operon control protein LIL_13230 SM00867 YceI-like domain LIL_13236 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LIL_13236 SM00267 diguanylate cyclase LIL_13243 SM00116 Domain in cystathionine beta-synthase and other proteins. LIL_13243 SM01091 Transporter associated domain LIL_13250 SM00487 DEAD-like helicases superfamily LIL_13250 SM00490 helicase superfamily c-terminal domain LIL_13278 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain LIL_13281 SM00925 MltA specific insert domain LIL_13282 SM00342 helix_turn_helix, arabinose operon control protein LIL_13288 SM00729 Elongator protein 3, MiaB family, Radical SAM LIL_13289 SM00387 Histidine kinase-like ATPases LIL_13289 SM00388 His Kinase A (phosphoacceptor) domain LIL_13289 SM00448 cheY-homologous receiver domain LIL_13298 SM00028 Tetratricopeptide repeats LIL_13316 SM00873 B3/4 domain LIL_13316 SM00874 tRNA synthetase B5 domain LIL_13316 SM00896 Ferredoxin-fold anticodon binding domain LIL_13317 SM00487 DEAD-like helicases superfamily LIL_13317 SM00490 helicase superfamily c-terminal domain LIL_13327 SM00487 DEAD-like helicases superfamily LIL_13327 SM00490 helicase superfamily c-terminal domain LIL_13331 SM00248 ankyrin repeats LIL_13337 SM00448 cheY-homologous receiver domain LIL_13339 SM01329 LIL_13339 LIL_13354 SM00829 Enoylreductase LIL_13360 SM00341 Helicase and RNase D C-terminal LIL_13360 SM00474 3'-5' exonuclease LIL_13368 SM00448 cheY-homologous receiver domain LIL_13368 SM00862 Transcriptional regulatory protein, C terminal LIL_13369 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LIL_13369 SM00387 Histidine kinase-like ATPases LIL_13369 SM00388 His Kinase A (phosphoacceptor) domain LIL_13372 SM00331 Sigma factor PP2C-like phosphatases LIL_13381 SM00292 breast cancer carboxy-terminal domain LIL_13381 SM00532 Ligase N family LIL_13390 SM00248 ankyrin repeats LIL_13391 SM00421 helix_turn_helix, Lux Regulon LIL_13394 SM00506 Appr-1"-p processing enzyme LIL_13405 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. LIL_13416 SM00382 ATPases associated with a variety of cellular activities LIL_13419 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LIL_13428 SM00562 LIL_13428 LIL_13430 SM01329 LIL_13430 LIL_13432 SM00448 cheY-homologous receiver domain LIL_13433 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LIL_13433 SM00091 PAS domain LIL_13433 SM00387 Histidine kinase-like ATPases LIL_13450 SM00434 DNA Topoisomerase IV LIL_13451 SM00433 TopoisomeraseII LIL_13461 SM00855 Phosphoglycerate mutase family LIL_13462 SM00327 von Willebrand factor (vWF) type A domain LIL_13470 SM00257 Lysin motif LIL_13488 SM00382 ATPases associated with a variety of cellular activities LIL_13489 SM00382 ATPases associated with a variety of cellular activities LIL_13493 SM00534 ATPase domain of DNA mismatch repair MUTS family LIL_13498 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_13504 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LIL_13505 SM00342 helix_turn_helix, arabinose operon control protein LIL_13511 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LIL_13516 SM00563 Phosphate acyltransferases LIL_13519 SM00342 helix_turn_helix, arabinose operon control protein LIL_13535 SM00382 ATPases associated with a variety of cellular activities LIL_13541 SM00855 Phosphoglycerate mutase family LIL_13545 SM00347 helix_turn_helix multiple antibiotic resistance protein LIL_13577 SM00382 ATPases associated with a variety of cellular activities LIL_13579 SM00493 LIL_13579 LIL_13581 SM00062 Bacterial periplasmic substrate-binding proteins LIL_13591 SM00470 ParB-like nuclease domain LIL_13598 SM01228 LIL_13598 LIL_20009 SM01004 Delta-aminolevulinic acid dehydratase LIL_20011 SM00387 Histidine kinase-like ATPases LIL_20011 SM00388 His Kinase A (phosphoacceptor) domain LIL_20012 SM00448 cheY-homologous receiver domain LIL_20012 SM00862 Transcriptional regulatory protein, C terminal LIL_20014 SM00729 Elongator protein 3, MiaB family, Radical SAM LIL_20021 SM00470 ParB-like nuclease domain LIL_20031 SM00822 LIL_20031 LIL_20032 SM00226 Low molecular weight phosphatase family LIL_20048 SM00327 von Willebrand factor (vWF) type A domain LIL_20049 SM00327 von Willebrand factor (vWF) type A domain LIL_20050 SM00028 Tetratricopeptide repeats LIL_20071 SM00028 Tetratricopeptide repeats LIL_20074 SM00822 LIL_20074 LIL_20076 SM00358 Double-stranded RNA binding motif LIL_20076 SM00535 Ribonuclease III family LIL_20086 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_20086 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LIL_20093 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LIL_20094 SM00996 S-adenosyl-L-homocysteine hydrolase LIL_20094 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LIL_20096 SM01018 B12 binding domain LIL_20100 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LIL_20100 SM00331 Sigma factor PP2C-like phosphatases LIL_20105 SM00028 Tetratricopeptide repeats LIL_20105 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain LIL_20111 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LIL_20115 SM00342 helix_turn_helix, arabinose operon control protein LIL_20116 SM00342 helix_turn_helix, arabinose operon control protein LIL_20117 SM00052 Putative diguanylate phosphodiesterase LIL_20122 SM00331 Sigma factor PP2C-like phosphatases LIL_20130 SM00855 Phosphoglycerate mutase family LIL_20154 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LIL_20191 SM00342 helix_turn_helix, arabinose operon control protein LIL_20194 SM00052 Putative diguanylate phosphodiesterase LIL_20194 SM00267 diguanylate cyclase LIL_20194 SM00448 cheY-homologous receiver domain LIL_20195 SM00267 diguanylate cyclase LIL_20196 SM00267 diguanylate cyclase LIL_20197 SM00387 Histidine kinase-like ATPases LIL_20197 SM00388 His Kinase A (phosphoacceptor) domain LIL_20197 SM00448 cheY-homologous receiver domain LIL_20211 SM00060 Fibronectin type 3 domain LIL_20211 SM00645 Papain family cysteine protease LIL_20238 SM00091 PAS domain LIL_20238 SM00387 Histidine kinase-like ATPases LIL_20240 SM01007 Class II Aldolase and Adducin N-terminal domain LIL_20242 SM00841 Elongation factor P, C-terminal LIL_20242 SM01185 LIL_20242 LIL_20251 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family LIL_20256 SM01005 Alanine racemase, C-terminal domain LIL_20257 SM00563 Phosphate acyltransferases LIL_20261 SM00387 Histidine kinase-like ATPases LIL_20261 SM00388 His Kinase A (phosphoacceptor) domain LIL_20279 SM00091 PAS domain LIL_20279 SM00387 Histidine kinase-like ATPases LIL_20281 SM01007 Class II Aldolase and Adducin N-terminal domain LIL_20283 SM00841 Elongation factor P, C-terminal LIL_20283 SM01185 LIL_20283 LIL_20292 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family LIL_20297 SM01005 Alanine racemase, C-terminal domain LIL_20298 SM00563 Phosphate acyltransferases LIL_20302 SM00387 Histidine kinase-like ATPases LIL_20302 SM00388 His Kinase A (phosphoacceptor) domain LIL_20310 SM00448 cheY-homologous receiver domain LIL_20310 SM00862 Transcriptional regulatory protein, C terminal LIL_20326 SM00859 Semialdehyde dehydrogenase, NAD binding domain LIL_20336 SM00470 ParB-like nuclease domain LIL_30005 SM00612 LIL_30005 LIL_30015 SM00342 helix_turn_helix, arabinose operon control protein LIL_30045 SM00966 SpoVT / AbrB like domain LIL_30052 SM00052 Putative diguanylate phosphodiesterase LIL_30052 SM00267 diguanylate cyclase LIL_30052 SM00448 cheY-homologous receiver domain LIL_30068 SM00287 Bacterial SH3 domain homologues LIL_40002 SM00470 ParB-like nuclease domain LIL_40010 SM00342 helix_turn_helix, arabinose operon control protein LIL_40013 SM00530 Helix-turn-helix XRE-family like proteins LIL_40019 SM00364 Leucine-rich repeats, bacterial type LIL_40019 SM00365 Leucine-rich repeat, SDS22-like subfamily LIL_40019 SM00369 Leucine-rich repeats, typical (most populated) subfamily LIL_40022 SM00966 SpoVT / AbrB like domain LIL_40044 SM00248 ankyrin repeats LIL_40054 SM00966 SpoVT / AbrB like domain LIL_50008 SM00966 SpoVT / AbrB like domain LIL_50009 SM00530 Helix-turn-helix XRE-family like proteins LIL_50010 SM00530 Helix-turn-helix XRE-family like proteins LIL_50012 SM00470 ParB-like nuclease domain LIL_50058 SM00382 ATPases associated with a variety of cellular activities LIL_50064 SM00530 Helix-turn-helix XRE-family like proteins LIL_50065 SM00974 LIL_50065