locus-tag class description CPQ89_00005 PF01053 Cys/Met metabolism PLP-dependent enzyme CPQ89_00010 PF00291 Pyridoxal-phosphate dependent enzyme CPQ89_00075 PF00665 Integrase core domain CPQ89_00075 PF13276 HTH-like domain CPQ89_00075 PF13333 Integrase core domain CPQ89_00080 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CPQ89_00080 PF01276 Orn/Lys/Arg decarboxylase, major domain CPQ89_00080 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CPQ89_00085 PF13520 Amino acid permease CPQ89_00090 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CPQ89_00115 PF00202 Aminotransferase class-III CPQ89_00120 PF07690 Major Facilitator Superfamily CPQ89_00130 PF13276 HTH-like domain CPQ89_00130 PF00665 Integrase core domain CPQ89_00130 PF13333 Integrase core domain CPQ89_00135 PF02574 Homocysteine S-methyltransferase CPQ89_00145 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CPQ89_00145 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CPQ89_00150 PF00232 Glycosyl hydrolase family 1 CPQ89_00155 PF07702 UTRA domain CPQ89_00155 PF00392 Bacterial regulatory proteins, gntR family CPQ89_00175 PF00005 ABC transporter CPQ89_00175 PF03412 Peptidase C39 family CPQ89_00175 PF00664 ABC transporter transmembrane region CPQ89_00200 PF00380 Ribosomal protein S9/S16 CPQ89_00205 PF00572 Ribosomal protein L13 CPQ89_00210 PF01416 tRNA pseudouridine synthase CPQ89_00215 PF02361 Cobalt transport protein CPQ89_00220 PF00005 ABC transporter CPQ89_00225 PF00005 ABC transporter CPQ89_00240 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPQ89_00240 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPQ89_00245 PF01196 Ribosomal protein L17 CPQ89_00250 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CPQ89_00250 PF01000 RNA polymerase Rpb3/RpoA insert domain CPQ89_00250 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CPQ89_00255 PF00411 Ribosomal protein S11 CPQ89_00260 PF00416 Ribosomal protein S13/S18 CPQ89_00265 PF00444 Ribosomal protein L36 CPQ89_00270 PF01176 Translation initiation factor 1A / IF-1 CPQ89_00275 PF05191 Adenylate kinase, active site lid CPQ89_00280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPQ89_00280 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPQ89_00290 PF00665 Integrase core domain CPQ89_00290 PF13936 Helix-turn-helix domain CPQ89_00295 PF00344 SecY translocase CPQ89_00300 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CPQ89_00305 PF00327 Ribosomal protein L30p/L7e CPQ89_00310 PF03719 Ribosomal protein S5, C-terminal domain CPQ89_00310 PF00333 Ribosomal protein S5, N-terminal domain CPQ89_00315 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CPQ89_00320 PF00347 Ribosomal protein L6 CPQ89_00325 PF00410 Ribosomal protein S8 CPQ89_00330 PF00253 Ribosomal protein S14p/S29e CPQ89_00335 PF00673 ribosomal L5P family C-terminus CPQ89_00335 PF00281 Ribosomal protein L5 CPQ89_00340 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CPQ89_00340 PF00467 KOW motif CPQ89_00345 PF00238 Ribosomal protein L14p/L23e CPQ89_00350 PF00366 Ribosomal protein S17 CPQ89_00355 PF00831 Ribosomal L29 protein CPQ89_00360 PF00252 Ribosomal protein L16p/L10e CPQ89_00365 PF00189 Ribosomal protein S3, C-terminal domain CPQ89_00365 PF07650 KH domain CPQ89_00370 PF00237 Ribosomal protein L22p/L17e CPQ89_00375 PF00203 Ribosomal protein S19 CPQ89_00380 PF00181 Ribosomal Proteins L2, RNA binding domain CPQ89_00380 PF03947 Ribosomal Proteins L2, C-terminal domain CPQ89_00385 PF00276 Ribosomal protein L23 CPQ89_00390 PF00573 Ribosomal protein L4/L1 family CPQ89_00395 PF00297 Ribosomal protein L3 CPQ89_00400 PF00338 Ribosomal protein S10p/S20e CPQ89_00405 PF00857 Isochorismatase family CPQ89_00415 PF00679 Elongation factor G C-terminus CPQ89_00415 PF14492 Elongation Factor G, domain II CPQ89_00415 PF03764 Elongation factor G, domain IV CPQ89_00415 PF00009 Elongation factor Tu GTP binding domain CPQ89_00415 PF03144 Elongation factor Tu domain 2 CPQ89_00420 PF00177 Ribosomal protein S7p/S5e CPQ89_00425 PF00164 Ribosomal protein S12/S23 CPQ89_00435 PF01156 Inosine-uridine preferring nucleoside hydrolase CPQ89_00440 PF05000 RNA polymerase Rpb1, domain 4 CPQ89_00440 PF04997 RNA polymerase Rpb1, domain 1 CPQ89_00440 PF00623 RNA polymerase Rpb1, domain 2 CPQ89_00440 PF04983 RNA polymerase Rpb1, domain 3 CPQ89_00440 PF04998 RNA polymerase Rpb1, domain 5 CPQ89_00445 PF04560 RNA polymerase Rpb2, domain 7 CPQ89_00445 PF04563 RNA polymerase beta subunit CPQ89_00445 PF04561 RNA polymerase Rpb2, domain 2 CPQ89_00445 PF04565 RNA polymerase Rpb2, domain 3 CPQ89_00445 PF10385 RNA polymerase beta subunit external 1 domain CPQ89_00445 PF00562 RNA polymerase Rpb2, domain 6 CPQ89_00465 PF13419 Haloacid dehalogenase-like hydrolase CPQ89_00490 PF01757 Acyltransferase family CPQ89_00515 PF12848 ABC transporter CPQ89_00515 PF00005 ABC transporter CPQ89_00520 PF10431 C-terminal, D2-small domain, of ClpB protein CPQ89_00520 PF02861 Clp amino terminal domain, pathogenicity island component CPQ89_00520 PF17871 AAA lid domain CPQ89_00520 PF07724 AAA domain (Cdc48 subfamily) CPQ89_00520 PF00004 ATPase family associated with various cellular activities (AAA) CPQ89_00525 PF17727 CtsR C-terminal dimerization domain CPQ89_00525 PF05848 CtsR N-terminal HTH domain CPQ89_00540 PF04973 Nicotinamide mononucleotide transporter CPQ89_00550 PF00072 Response regulator receiver domain CPQ89_00550 PF04397 LytTr DNA-binding domain CPQ89_00560 PF00005 ABC transporter CPQ89_00565 PF03412 Peptidase C39 family CPQ89_00565 PF00005 ABC transporter CPQ89_00565 PF00664 ABC transporter transmembrane region CPQ89_00570 PF04055 Radical SAM superfamily CPQ89_00570 PF13186 Iron-sulfur cluster-binding domain CPQ89_00585 PF05014 Nucleoside 2-deoxyribosyltransferase CPQ89_00595 PF01380 SIS domain CPQ89_00605 PF08125 Mannitol dehydrogenase C-terminal domain CPQ89_00605 PF01232 Mannitol dehydrogenase Rossmann domain CPQ89_00610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CPQ89_00615 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CPQ89_00615 PF02378 Phosphotransferase system, EIIC CPQ89_00670 PF08240 Alcohol dehydrogenase GroES-like domain CPQ89_00670 PF00107 Zinc-binding dehydrogenase CPQ89_00705 PF01638 HxlR-like helix-turn-helix CPQ89_00720 PF00665 Integrase core domain CPQ89_00720 PF13276 HTH-like domain CPQ89_00720 PF13333 Integrase core domain CPQ89_00745 PF04002 RadC-like JAB domain CPQ89_00745 PF12826 Helix-hairpin-helix motif CPQ89_00750 PF03965 Penicillinase repressor CPQ89_00770 PF00300 Histidine phosphatase superfamily (branch 1) CPQ89_00775 PF00155 Aminotransferase class I and II CPQ89_00780 PF01594 AI-2E family transporter CPQ89_00785 PF01263 Aldose 1-epimerase CPQ89_00795 PF16363 GDP-mannose 4,6 dehydratase CPQ89_00800 PF00392 Bacterial regulatory proteins, gntR family CPQ89_00800 PF07702 UTRA domain CPQ89_00810 PF00005 ABC transporter CPQ89_00820 PF00871 Acetokinase family CPQ89_00825 PF09364 XFP N-terminal domain CPQ89_00825 PF09363 XFP C-terminal domain CPQ89_00825 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase CPQ89_00830 PF00300 Histidine phosphatase superfamily (branch 1) CPQ89_00840 PF00403 Heavy-metal-associated domain CPQ89_00855 PF00005 ABC transporter CPQ89_00865 PF14667 Polysaccharide biosynthesis C-terminal domain CPQ89_00865 PF01943 Polysaccharide biosynthesis protein CPQ89_00870 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CPQ89_00905 PF05816 Toxic anion resistance protein (TelA) CPQ89_00915 PF00331 Glycosyl hydrolase family 10 CPQ89_00915 PF00756 Putative esterase CPQ89_00915 PF03422 Carbohydrate binding module (family 6) CPQ89_00915 PF00404 Dockerin type I domain CPQ89_00920 PF07690 Major Facilitator Superfamily CPQ89_00925 PF14278 Transcriptional regulator C-terminal region CPQ89_00925 PF00440 Bacterial regulatory proteins, tetR family CPQ89_00930 PF02733 Dak1 domain CPQ89_00935 PF02733 Dak1 domain CPQ89_00940 PF00872 Transposase, Mutator family CPQ89_00970 PF03852 DNA mismatch endonuclease Vsr CPQ89_00970 PF04480 Protein of unknown function (DUF559) CPQ89_00980 PF00145 C-5 cytosine-specific DNA methylase CPQ89_00985 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CPQ89_01015 PF00145 C-5 cytosine-specific DNA methylase CPQ89_01040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CPQ89_01040 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CPQ89_01055 PF02463 RecF/RecN/SMC N terminal domain CPQ89_01070 PF01418 Helix-turn-helix domain, rpiR family CPQ89_01070 PF01380 SIS domain CPQ89_01075 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CPQ89_01080 PF02378 Phosphotransferase system, EIIC CPQ89_01080 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CPQ89_01080 PF00367 phosphotransferase system, EIIB CPQ89_01085 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CPQ89_01085 PF00367 phosphotransferase system, EIIB CPQ89_01085 PF02378 Phosphotransferase system, EIIC CPQ89_01095 PF02661 Fic/DOC family CPQ89_01095 PF13784 Fic/DOC family N-terminal CPQ89_01115 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPQ89_01115 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPQ89_01120 PF02082 Transcriptional regulator CPQ89_01130 PF00561 alpha/beta hydrolase fold CPQ89_01145 PF02661 Fic/DOC family CPQ89_01145 PF13784 Fic/DOC family N-terminal CPQ89_01155 PF00294 pfkB family carbohydrate kinase CPQ89_01160 PF01156 Inosine-uridine preferring nucleoside hydrolase CPQ89_01165 PF07662 Na+ dependent nucleoside transporter C-terminus CPQ89_01165 PF01773 Na+ dependent nucleoside transporter N-terminus CPQ89_01170 PF00465 Iron-containing alcohol dehydrogenase CPQ89_01175 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CPQ89_01180 PF00294 pfkB family carbohydrate kinase CPQ89_01205 PF00672 HAMP domain CPQ89_01205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPQ89_01205 PF00512 His Kinase A (phospho-acceptor) domain CPQ89_01210 PF00486 Transcriptional regulatory protein, C terminal CPQ89_01210 PF00072 Response regulator receiver domain CPQ89_01220 PF01661 Macro domain CPQ89_01240 PF07690 Major Facilitator Superfamily CPQ89_01240 PF00083 Sugar (and other) transporter CPQ89_01245 PF00872 Transposase, Mutator family CPQ89_01255 PF00589 Phage integrase family CPQ89_01255 PF02899 Phage integrase, N-terminal SAM-like domain CPQ89_01270 PF12161 HsdM N-terminal domain CPQ89_01270 PF02384 N-6 DNA Methylase CPQ89_01275 PF01420 Type I restriction modification DNA specificity domain CPQ89_01280 PF00872 Transposase, Mutator family CPQ89_01285 PF00132 Bacterial transferase hexapeptide (six repeats) CPQ89_01285 PF12464 Maltose acetyltransferase CPQ89_01290 PF07282 Putative transposase DNA-binding domain CPQ89_01290 PF12323 Helix-turn-helix domain CPQ89_01290 PF01385 Probable transposase CPQ89_01310 PF01306 LacY proton/sugar symporter CPQ89_01315 PF00251 Glycosyl hydrolases family 32 N-terminal domain CPQ89_01315 PF08244 Glycosyl hydrolases family 32 C terminal CPQ89_01320 PF00356 Bacterial regulatory proteins, lacI family CPQ89_01330 PF00958 GMP synthase C terminal domain CPQ89_01330 PF00117 Glutamine amidotransferase class-I CPQ89_01330 PF02540 NAD synthase CPQ89_01335 PF00485 Phosphoribulokinase / Uridine kinase family CPQ89_01350 PF13538 UvrD-like helicase C-terminal domain CPQ89_01355 PF02254 TrkA-N domain CPQ89_01355 PF00999 Sodium/hydrogen exchanger family CPQ89_01355 PF02080 TrkA-C domain CPQ89_01375 PF07282 Putative transposase DNA-binding domain CPQ89_01375 PF01385 Probable transposase CPQ89_01375 PF12323 Helix-turn-helix domain CPQ89_01385 PF00005 ABC transporter CPQ89_01390 PF00005 ABC transporter CPQ89_01390 PF17755 UvrA DNA-binding domain CPQ89_01390 PF17760 UvrA interaction domain CPQ89_01400 PF00871 Acetokinase family CPQ89_01405 PF00596 Class II Aldolase and Adducin N-terminal domain CPQ89_01410 PF01261 Xylose isomerase-like TIM barrel CPQ89_01415 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CPQ89_01425 PF03611 PTS system sugar-specific permease component CPQ89_01430 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CPQ89_01445 PF08220 DeoR-like helix-turn-helix domain CPQ89_01445 PF00455 DeoR C terminal sensor domain CPQ89_01450 PF00455 DeoR C terminal sensor domain CPQ89_01450 PF08220 DeoR-like helix-turn-helix domain CPQ89_01490 PF01926 50S ribosome-binding GTPase CPQ89_01490 PF06071 Protein of unknown function (DUF933) CPQ89_01495 PF06107 Bacterial protein of unknown function (DUF951) CPQ89_01500 PF17762 HTH domain found in ParB protein CPQ89_01500 PF02195 ParB-like nuclease domain CPQ89_01505 PF13614 AAA domain CPQ89_01510 PF02195 ParB-like nuclease domain CPQ89_01510 PF17762 HTH domain found in ParB protein CPQ89_01515 PF02527 rRNA small subunit methyltransferase G CPQ89_01525 PF01966 HD domain CPQ89_01550 PF00005 ABC transporter CPQ89_01555 PF00950 ABC 3 transport family CPQ89_01570 PF00005 ABC transporter CPQ89_01575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPQ89_01575 PF00512 His Kinase A (phospho-acceptor) domain CPQ89_01580 PF00486 Transcriptional regulatory protein, C terminal CPQ89_01580 PF00072 Response regulator receiver domain CPQ89_01585 PF01966 HD domain CPQ89_01595 PF12822 ECF transporter, substrate-specific component CPQ89_01600 PF03167 Uracil DNA glycosylase superfamily CPQ89_01605 PF00266 Aminotransferase class-V CPQ89_01610 PF00877 NlpC/P60 family CPQ89_01615 PF02903 Alpha amylase, N-terminal ig-like domain CPQ89_01615 PF00128 Alpha amylase, catalytic domain CPQ89_01625 PF02903 Alpha amylase, N-terminal ig-like domain CPQ89_01625 PF00128 Alpha amylase, catalytic domain CPQ89_01630 PF00128 Alpha amylase, catalytic domain CPQ89_01635 PF00356 Bacterial regulatory proteins, lacI family CPQ89_01640 PF13416 Bacterial extracellular solute-binding protein CPQ89_01645 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_01650 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_01675 PF02378 Phosphotransferase system, EIIC CPQ89_01675 PF00367 phosphotransferase system, EIIB CPQ89_01675 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CPQ89_01680 PF08244 Glycosyl hydrolases family 32 C terminal CPQ89_01680 PF00251 Glycosyl hydrolases family 32 N-terminal domain CPQ89_01685 PF00356 Bacterial regulatory proteins, lacI family CPQ89_01695 PF00069 Protein kinase domain CPQ89_01700 PF00005 ABC transporter CPQ89_01700 PF03412 Peptidase C39 family CPQ89_01700 PF00664 ABC transporter transmembrane region CPQ89_01705 PF03372 Endonuclease/Exonuclease/phosphatase family CPQ89_01710 PF02378 Phosphotransferase system, EIIC CPQ89_01710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CPQ89_01710 PF00367 phosphotransferase system, EIIB CPQ89_01720 PF05870 Phenolic acid decarboxylase (PAD) CPQ89_01725 PF18419 ATP-grasp-like domain CPQ89_01725 PF04262 Glutamate-cysteine ligase CPQ89_01725 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPQ89_01750 PF03613 PTS system mannose/fructose/sorbose family IID component CPQ89_01755 PF03609 PTS system sorbose-specific iic component CPQ89_01760 PF03610 PTS system fructose IIA component CPQ89_01760 PF03830 PTS system sorbose subfamily IIB component CPQ89_01765 PF03830 PTS system sorbose subfamily IIB component CPQ89_01765 PF03610 PTS system fructose IIA component CPQ89_01775 PF03610 PTS system fructose IIA component CPQ89_01775 PF00874 PRD domain CPQ89_01775 PF00158 Sigma-54 interaction domain CPQ89_01780 PF03109 ABC1 family CPQ89_01800 PF06800 Sugar transport protein CPQ89_01805 PF05025 RbsD / FucU transport protein family CPQ89_01810 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CPQ89_01810 PF00294 pfkB family carbohydrate kinase CPQ89_01815 PF00356 Bacterial regulatory proteins, lacI family CPQ89_01820 PF13416 Bacterial extracellular solute-binding protein CPQ89_01825 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_01830 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_01835 PF08402 TOBE domain CPQ89_01835 PF00005 ABC transporter CPQ89_01840 PF01226 Formate/nitrite transporter CPQ89_01850 PF00578 AhpC/TSA family CPQ89_01860 PF01965 DJ-1/PfpI family CPQ89_01865 PF02525 Flavodoxin-like fold CPQ89_01870 PF01810 LysE type translocator CPQ89_01875 PF13419 Haloacid dehalogenase-like hydrolase CPQ89_01880 PF03632 Glycosyl hydrolase family 65 central catalytic domain CPQ89_01880 PF03636 Glycosyl hydrolase family 65, N-terminal domain CPQ89_01880 PF03633 Glycosyl hydrolase family 65, C-terminal domain CPQ89_01885 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CPQ89_01885 PF00356 Bacterial regulatory proteins, lacI family CPQ89_01895 PF00403 Heavy-metal-associated domain CPQ89_01900 PF05525 Branched-chain amino acid transport protein CPQ89_01905 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_01910 PF00571 CBS domain CPQ89_01910 PF00005 ABC transporter CPQ89_01915 PF00664 ABC transporter transmembrane region CPQ89_01915 PF00005 ABC transporter CPQ89_01920 PF00664 ABC transporter transmembrane region CPQ89_01920 PF00005 ABC transporter CPQ89_01925 PF01022 Bacterial regulatory protein, arsR family CPQ89_01935 PF04239 Protein of unknown function (DUF421) CPQ89_01970 PF03551 Transcriptional regulator PadR-like family CPQ89_01990 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPQ89_01995 PF13411 MerR HTH family regulatory protein CPQ89_02000 PF07690 Major Facilitator Superfamily CPQ89_02025 PF01721 Class II bacteriocin CPQ89_02035 PF12323 Helix-turn-helix domain CPQ89_02035 PF07282 Putative transposase DNA-binding domain CPQ89_02035 PF01385 Probable transposase CPQ89_02050 PF02056 Family 4 glycosyl hydrolase CPQ89_02050 PF11975 Family 4 glycosyl hydrolase C-terminal domain CPQ89_02055 PF02378 Phosphotransferase system, EIIC CPQ89_02055 PF00367 phosphotransferase system, EIIB CPQ89_02060 PF01047 MarR family CPQ89_02065 PF14804 Jag N-terminus CPQ89_02065 PF01424 R3H domain CPQ89_02070 PF00248 Aldo/keto reductase family CPQ89_02075 PF05649 Peptidase family M13 CPQ89_02075 PF01431 Peptidase family M13 CPQ89_02080 PF00999 Sodium/hydrogen exchanger family CPQ89_02095 PF00106 short chain dehydrogenase CPQ89_02100 PF04474 Protein of unknown function (DUF554) CPQ89_02105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPQ89_02110 PF03883 Peroxide stress protein YaaA CPQ89_02115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPQ89_02120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPQ89_02125 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_02130 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_02135 PF00005 ABC transporter CPQ89_02135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPQ89_02140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPQ89_02140 PF00005 ABC transporter CPQ89_02145 PF05525 Branched-chain amino acid transport protein CPQ89_02150 PF00324 Amino acid permease CPQ89_02155 PF04284 Protein of unknown function (DUF441) CPQ89_02160 PF01134 Glucose inhibited division protein A CPQ89_02160 PF13932 GidA associated domain CPQ89_02165 PF01926 50S ribosome-binding GTPase CPQ89_02165 PF10396 GTP-binding protein TrmE N-terminus CPQ89_02165 PF12631 MnmE helical domain CPQ89_02175 PF00232 Glycosyl hydrolase family 1 CPQ89_02180 PF00300 Histidine phosphatase superfamily (branch 1) CPQ89_02230 PF03412 Peptidase C39 family CPQ89_02230 PF00664 ABC transporter transmembrane region CPQ89_02230 PF00005 ABC transporter CPQ89_02325 PF00232 Glycosyl hydrolase family 1 CPQ89_02330 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CPQ89_02330 PF00367 phosphotransferase system, EIIB CPQ89_02330 PF02378 Phosphotransferase system, EIIC CPQ89_02335 PF07702 UTRA domain CPQ89_02335 PF00392 Bacterial regulatory proteins, gntR family CPQ89_02365 PF00005 ABC transporter CPQ89_02375 PF02086 D12 class N6 adenine-specific DNA methyltransferase CPQ89_02380 PF09254 Restriction endonuclease FokI, C terminal CPQ89_02380 PF02980 Restriction endonuclease FokI, catalytic domain CPQ89_02380 PF16902 Type-2 restriction enzyme D3 domain CPQ89_02380 PF02981 Restriction endonuclease FokI, recognition domain CPQ89_02390 PF00300 Histidine phosphatase superfamily (branch 1) CPQ89_02405 PF00860 Permease family CPQ89_02415 PF00534 Glycosyl transferases group 1 CPQ89_02425 PF15432 Accessory Sec secretory system ASP3 CPQ89_02430 PF16929 Accessory Sec system GspB-transporter CPQ89_02435 PF16993 Accessory Sec system protein Asp1 CPQ89_02440 PF00344 SecY translocase CPQ89_02445 PF17961 Bacterial Ig domain CPQ89_02445 PF04650 YSIRK type signal peptide CPQ89_02445 PF10425 C-terminus of bacterial fibrinogen-binding adhesin CPQ89_02445 PF00746 LPXTG cell wall anchor motif CPQ89_02445 PF17210 SdrD B-like domain CPQ89_02450 PF04205 FMN-binding domain CPQ89_02450 PF00890 FAD binding domain CPQ89_02450 PF03358 NADPH-dependent FMN reductase CPQ89_02455 PF02424 ApbE family CPQ89_02460 PF02096 60Kd inner membrane protein CPQ89_02465 PF00825 Ribonuclease P CPQ89_02470 PF00468 Ribosomal protein L34 CPQ89_02475 PF08299 Bacterial dnaA protein helix-turn-helix CPQ89_02475 PF00308 Bacterial dnaA protein CPQ89_02480 PF02768 DNA polymerase III beta subunit, C-terminal domain CPQ89_02480 PF02767 DNA polymerase III beta subunit, central domain CPQ89_02480 PF00712 DNA polymerase III beta subunit, N-terminal domain CPQ89_02490 PF02463 RecF/RecN/SMC N terminal domain CPQ89_02495 PF00986 DNA gyrase B subunit, carboxyl terminus CPQ89_02495 PF00204 DNA gyrase B CPQ89_02495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPQ89_02495 PF01751 Toprim domain CPQ89_02500 PF03989 DNA gyrase C-terminal domain, beta-propeller CPQ89_02500 PF00521 DNA gyrase/topoisomerase IV, subunit A CPQ89_02510 PF01250 Ribosomal protein S6 CPQ89_02515 PF00436 Single-strand binding protein family CPQ89_02520 PF01084 Ribosomal protein S18 CPQ89_02540 PF13333 Integrase core domain CPQ89_02540 PF13276 HTH-like domain CPQ89_02540 PF00665 Integrase core domain CPQ89_02550 PF13936 Helix-turn-helix domain CPQ89_02550 PF00665 Integrase core domain CPQ89_02570 PF00664 ABC transporter transmembrane region CPQ89_02570 PF00005 ABC transporter CPQ89_02570 PF03412 Peptidase C39 family CPQ89_02610 PF02272 DHHA1 domain CPQ89_02610 PF01368 DHH family CPQ89_02615 PF03948 Ribosomal protein L9, C-terminal domain CPQ89_02615 PF01281 Ribosomal protein L9, N-terminal domain CPQ89_02620 PF03466 LysR substrate binding domain CPQ89_02620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPQ89_02625 PF00892 EamA-like transporter family CPQ89_02645 PF03796 DnaB-like helicase C terminal domain CPQ89_02645 PF00772 DnaB-like helicase N terminal domain CPQ89_02650 PF00733 Asparagine synthase CPQ89_02650 PF13537 Glutamine amidotransferase domain CPQ89_02675 PF07282 Putative transposase DNA-binding domain CPQ89_02675 PF12323 Helix-turn-helix domain CPQ89_02675 PF01385 Probable transposase CPQ89_02680 PF13840 ACT domain CPQ89_02680 PF00696 Amino acid kinase family CPQ89_02685 PF14821 Threonine synthase N terminus CPQ89_02685 PF00291 Pyridoxal-phosphate dependent enzyme CPQ89_02690 PF03447 Homoserine dehydrogenase, NAD binding domain CPQ89_02690 PF00742 Homoserine dehydrogenase CPQ89_02690 PF01842 ACT domain CPQ89_02695 PF08544 GHMP kinases C terminal CPQ89_02695 PF00288 GHMP kinases N terminal domain CPQ89_02710 PF08245 Mur ligase middle domain CPQ89_02710 PF02875 Mur ligase family, glutamate ligase domain CPQ89_02720 PF01177 Asp/Glu/Hydantoin racemase CPQ89_02730 PF00762 Ferrochelatase CPQ89_02745 PF04204 Homoserine O-succinyltransferase CPQ89_02750 PF00291 Pyridoxal-phosphate dependent enzyme CPQ89_02755 PF03466 LysR substrate binding domain CPQ89_02755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPQ89_02785 PF01935 Helicase HerA, central domain CPQ89_02785 PF09378 HAS barrel domain CPQ89_02800 PF07690 Major Facilitator Superfamily CPQ89_02810 PF01264 Chorismate synthase CPQ89_02815 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPQ89_02820 PF01202 Shikimate kinase CPQ89_02825 PF00860 Permease family CPQ89_02840 PF00709 Adenylosuccinate synthetase CPQ89_02845 PF02901 Pyruvate formate lyase-like CPQ89_02845 PF01228 Glycine radical CPQ89_02850 PF04055 Radical SAM superfamily CPQ89_02865 PF12558 ATP-binding cassette cobalt transporter CPQ89_02865 PF00005 ABC transporter CPQ89_02870 PF07155 ECF-type riboflavin transporter, S component CPQ89_02880 PF03061 Thioesterase superfamily CPQ89_02885 PF00690 Cation transporter/ATPase, N-terminus CPQ89_02885 PF00689 Cation transporting ATPase, C-terminus CPQ89_02895 PF07662 Na+ dependent nucleoside transporter C-terminus CPQ89_02895 PF01773 Na+ dependent nucleoside transporter N-terminus CPQ89_02900 PF06993 Protein of unknown function (DUF1304) CPQ89_02930 PF00486 Transcriptional regulatory protein, C terminal CPQ89_02930 PF00072 Response regulator receiver domain CPQ89_02935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPQ89_02935 PF00989 PAS fold CPQ89_02935 PF00512 His Kinase A (phospho-acceptor) domain CPQ89_02935 PF00672 HAMP domain CPQ89_02950 PF00753 Metallo-beta-lactamase superfamily CPQ89_02955 PF13180 PDZ domain CPQ89_02960 PF02590 Predicted SPOUT methyltransferase CPQ89_02975 PF12323 Helix-turn-helix domain CPQ89_02975 PF01385 Probable transposase CPQ89_02975 PF07282 Putative transposase DNA-binding domain CPQ89_02990 PF00746 LPXTG cell wall anchor motif CPQ89_02990 PF17480 AlphaC C-terminal CPQ89_02990 PF08829 Alpha C protein N terminal CPQ89_02990 PF04650 YSIRK type signal peptide CPQ89_02995 PF04650 YSIRK type signal peptide CPQ89_02995 PF17480 AlphaC C-terminal CPQ89_02995 PF00746 LPXTG cell wall anchor motif CPQ89_02995 PF08829 Alpha C protein N terminal CPQ89_03010 PF01712 Deoxynucleoside kinase CPQ89_03025 PF07724 AAA domain (Cdc48 subfamily) CPQ89_03025 PF10431 C-terminal, D2-small domain, of ClpB protein CPQ89_03025 PF00004 ATPase family associated with various cellular activities (AAA) CPQ89_03025 PF17871 AAA lid domain CPQ89_03030 PF01812 5-formyltetrahydrofolate cyclo-ligase family CPQ89_03035 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_03045 PF01325 Iron dependent repressor, N-terminal DNA binding domain CPQ89_03045 PF00480 ROK family CPQ89_03050 PF02378 Phosphotransferase system, EIIC CPQ89_03060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CPQ89_03065 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CPQ89_03070 PF04650 YSIRK type signal peptide CPQ89_03070 PF02973 Sialidase, N-terminal domain CPQ89_03070 PF13088 BNR repeat-like domain CPQ89_03080 PF01063 Amino-transferase class IV CPQ89_03100 PF02677 Epoxyqueuosine reductase QueH CPQ89_03150 PF07690 Major Facilitator Superfamily CPQ89_03160 PF05167 Uncharacterised ACR (DUF711) CPQ89_03165 PF00455 DeoR C terminal sensor domain CPQ89_03165 PF08220 DeoR-like helix-turn-helix domain CPQ89_03170 PF00294 pfkB family carbohydrate kinase CPQ89_03175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CPQ89_03175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CPQ89_03185 PF00324 Amino acid permease CPQ89_03205 PF00535 Glycosyl transferase family 2 CPQ89_03225 PF03275 UDP-galactopyranose mutase CPQ89_03250 PF13439 Glycosyltransferase Family 4 CPQ89_03250 PF00534 Glycosyl transferases group 1 CPQ89_03260 PF02397 Bacterial sugar transferase CPQ89_03265 PF00535 Glycosyl transferase family 2 CPQ89_03270 PF00535 Glycosyl transferase family 2 CPQ89_03275 PF00535 Glycosyl transferase family 2 CPQ89_03285 PF00403 Heavy-metal-associated domain CPQ89_03290 PF02645 Uncharacterised protein, DegV family COG1307 CPQ89_03305 PF00483 Nucleotidyl transferase CPQ89_03310 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CPQ89_03315 PF16363 GDP-mannose 4,6 dehydratase CPQ89_03320 PF04321 RmlD substrate binding domain CPQ89_03345 PF00535 Glycosyl transferase family 2 CPQ89_03350 PF02706 Chain length determinant protein CPQ89_03355 PF13614 AAA domain CPQ89_03365 PF02397 Bacterial sugar transferase CPQ89_03395 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPQ89_03400 PF00005 ABC transporter CPQ89_03405 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_03415 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CPQ89_03415 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CPQ89_03420 PF03553 Na+/H+ antiporter family CPQ89_03425 PF03741 Integral membrane protein TerC family CPQ89_03435 PF00085 Thioredoxin CPQ89_03440 PF02645 Uncharacterised protein, DegV family COG1307 CPQ89_03470 PF12704 MacB-like periplasmic core domain CPQ89_03470 PF02687 FtsX-like permease family CPQ89_03470 PF00005 ABC transporter CPQ89_03495 PF00899 ThiF family CPQ89_03500 PF00005 ABC transporter CPQ89_03505 PF01061 ABC-2 type transporter CPQ89_03510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPQ89_03515 PF01554 MatE CPQ89_03520 PF00480 ROK family CPQ89_03525 PF00005 ABC transporter CPQ89_03535 PF01891 Cobalt uptake substrate-specific transmembrane region CPQ89_03535 PF13190 PDGLE domain CPQ89_03540 PF00909 Ammonium Transporter Family CPQ89_03545 PF02293 AmiS/UreI family transporter CPQ89_03550 PF00547 Urease, gamma subunit CPQ89_03555 PF00699 Urease beta subunit CPQ89_03560 PF00449 Urease alpha-subunit, N-terminal domain CPQ89_03560 PF01979 Amidohydrolase family CPQ89_03565 PF02814 UreE urease accessory protein, N-terminal domain CPQ89_03570 PF01730 UreF CPQ89_03575 PF02492 CobW/HypB/UreG, nucleotide-binding domain CPQ89_03580 PF01774 UreD urease accessory protein CPQ89_03585 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CPQ89_03590 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CPQ89_03600 PF01385 Probable transposase CPQ89_03600 PF07282 Putative transposase DNA-binding domain CPQ89_03600 PF12323 Helix-turn-helix domain CPQ89_03605 PF00392 Bacterial regulatory proteins, gntR family CPQ89_03605 PF07702 UTRA domain CPQ89_03635 PF12323 Helix-turn-helix domain CPQ89_03635 PF07282 Putative transposase DNA-binding domain CPQ89_03635 PF01385 Probable transposase CPQ89_03640 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CPQ89_03645 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CPQ89_03645 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal CPQ89_03645 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CPQ89_03650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPQ89_03655 PF00999 Sodium/hydrogen exchanger family CPQ89_03660 PF13520 Amino acid permease CPQ89_03665 PF00625 Guanylate kinase CPQ89_03670 PF01475 Ferric uptake regulator family CPQ89_03690 PF00474 Sodium:solute symporter family CPQ89_03695 PF00999 Sodium/hydrogen exchanger family CPQ89_03705 PF00480 ROK family CPQ89_03710 PF00701 Dihydrodipicolinate synthetase family CPQ89_03715 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CPQ89_03720 PF01380 SIS domain CPQ89_03720 PF01418 Helix-turn-helix domain, rpiR family CPQ89_03725 PF13520 Amino acid permease CPQ89_03730 PF01926 50S ribosome-binding GTPase CPQ89_03730 PF13167 GTP-binding GTPase N-terminal CPQ89_03730 PF16360 GTP-binding GTPase Middle Region CPQ89_03740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPQ89_03745 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_03750 PF12911 N-terminal TM domain of oligopeptide transport permease C CPQ89_03750 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_03755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPQ89_03755 PF00005 ABC transporter CPQ89_03760 PF00005 ABC transporter CPQ89_03760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPQ89_03765 PF00860 Permease family CPQ89_03770 PF02378 Phosphotransferase system, EIIC CPQ89_03780 PF00696 Amino acid kinase family CPQ89_03785 PF00171 Aldehyde dehydrogenase family CPQ89_03790 PF00881 Nitroreductase family CPQ89_03800 PF00072 Response regulator receiver domain CPQ89_03800 PF00486 Transcriptional regulatory protein, C terminal CPQ89_03805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPQ89_03805 PF00512 His Kinase A (phospho-acceptor) domain CPQ89_03810 PF07943 Penicillin-binding protein 5, C-terminal domain CPQ89_03810 PF00768 D-alanyl-D-alanine carboxypeptidase CPQ89_03820 PF02645 Uncharacterised protein, DegV family COG1307 CPQ89_03830 PF00005 ABC transporter CPQ89_03830 PF13732 Domain of unknown function (DUF4162) CPQ89_03845 PF02386 Cation transport protein CPQ89_03870 PF02378 Phosphotransferase system, EIIC CPQ89_03875 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CPQ89_03880 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CPQ89_03885 PF00480 ROK family CPQ89_03890 PF00232 Glycosyl hydrolase family 1 CPQ89_03895 PF13520 Amino acid permease CPQ89_03910 PF00849 RNA pseudouridylate synthase CPQ89_03910 PF01479 S4 domain CPQ89_03915 PF00950 ABC 3 transport family CPQ89_03915 PF02742 Iron dependent repressor, metal binding and dimerisation domain CPQ89_03920 PF00313 'Cold-shock' DNA-binding domain CPQ89_03925 PF07690 Major Facilitator Superfamily CPQ89_03930 PF03816 Cell envelope-related transcriptional attenuator domain CPQ89_03940 PF01925 Sulfite exporter TauE/SafE CPQ89_03955 PF02082 Transcriptional regulator CPQ89_03960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPQ89_03960 PF00205 Thiamine pyrophosphate enzyme, central domain CPQ89_03960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPQ89_03965 PF03306 Alpha-acetolactate decarboxylase CPQ89_03970 PF00324 Amino acid permease CPQ89_03975 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPQ89_03975 PF02403 Seryl-tRNA synthetase N-terminal domain CPQ89_03980 PF00300 Histidine phosphatase superfamily (branch 1) CPQ89_04060 PF07722 Peptidase C26 CPQ89_04065 PF00107 Zinc-binding dehydrogenase CPQ89_04065 PF08240 Alcohol dehydrogenase GroES-like domain CPQ89_04070 PF04262 Glutamate-cysteine ligase CPQ89_04070 PF18419 ATP-grasp-like domain CPQ89_04080 PF00085 Thioredoxin CPQ89_04085 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPQ89_04100 PF07690 Major Facilitator Superfamily CPQ89_04105 PF13193 AMP-binding enzyme C-terminal domain CPQ89_04105 PF00501 AMP-binding enzyme CPQ89_04110 PF00378 Enoyl-CoA hydratase/isomerase CPQ89_04115 PF03061 Thioesterase superfamily CPQ89_04120 PF16657 Maltogenic Amylase, C-terminal domain CPQ89_04120 PF00128 Alpha amylase, catalytic domain CPQ89_04125 PF07702 UTRA domain CPQ89_04125 PF00392 Bacterial regulatory proteins, gntR family CPQ89_04130 PF00367 phosphotransferase system, EIIB CPQ89_04130 PF02378 Phosphotransferase system, EIIC CPQ89_04130 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CPQ89_04135 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CPQ89_04140 PF00356 Bacterial regulatory proteins, lacI family CPQ89_04165 PF00583 Acetyltransferase (GNAT) family CPQ89_04170 PF01047 MarR family CPQ89_04185 PF00403 Heavy-metal-associated domain CPQ89_04200 PF00465 Iron-containing alcohol dehydrogenase CPQ89_04200 PF00171 Aldehyde dehydrogenase family CPQ89_04210 PF01791 DeoC/LacD family aldolase CPQ89_04215 PF00392 Bacterial regulatory proteins, gntR family CPQ89_04215 PF07702 UTRA domain CPQ89_04225 PF01301 Glycosyl hydrolases family 35 CPQ89_04230 PF03610 PTS system fructose IIA component CPQ89_04230 PF03830 PTS system sorbose subfamily IIB component CPQ89_04235 PF03609 PTS system sorbose-specific iic component CPQ89_04240 PF03613 PTS system mannose/fructose/sorbose family IID component CPQ89_04250 PF01380 SIS domain CPQ89_04255 PF01979 Amidohydrolase family CPQ89_04260 PF01717 Cobalamin-independent synthase, Catalytic domain CPQ89_04275 PF00232 Glycosyl hydrolase family 1 CPQ89_04280 PF00367 phosphotransferase system, EIIB CPQ89_04280 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CPQ89_04280 PF02378 Phosphotransferase system, EIIC CPQ89_04285 PF00874 PRD domain CPQ89_04285 PF03123 CAT RNA binding domain CPQ89_04295 PF00334 Nucleoside diphosphate kinase CPQ89_04300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPQ89_04305 PF06738 Putative threonine/serine exporter CPQ89_04335 PF01904 Protein of unknown function DUF72 CPQ89_04340 PF01327 Polypeptide deformylase CPQ89_04365 PF00056 lactate/malate dehydrogenase, NAD binding domain CPQ89_04365 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CPQ89_04375 PF01195 Peptidyl-tRNA hydrolase CPQ89_04380 PF00270 DEAD/DEAH box helicase CPQ89_04380 PF17757 UvrB interaction domain CPQ89_04380 PF03461 TRCF domain CPQ89_04380 PF00271 Helicase conserved C-terminal domain CPQ89_04380 PF02559 CarD-like/TRCF domain CPQ89_04385 PF14667 Polysaccharide biosynthesis C-terminal domain CPQ89_04385 PF01943 Polysaccharide biosynthesis protein CPQ89_04390 PF01479 S4 domain CPQ89_04400 PF00575 S1 RNA binding domain CPQ89_04405 PF01171 PP-loop family CPQ89_04405 PF11734 TilS substrate C-terminal domain CPQ89_04410 PF00156 Phosphoribosyl transferase domain CPQ89_04415 PF00004 ATPase family associated with various cellular activities (AAA) CPQ89_04415 PF17862 AAA+ lid domain CPQ89_04415 PF06480 FtsH Extracellular CPQ89_04415 PF01434 Peptidase family M41 CPQ89_04420 PF01430 Hsp33 protein CPQ89_04425 PF01207 Dihydrouridine synthase (Dus) CPQ89_04430 PF00152 tRNA synthetases class II (D, K and N) CPQ89_04430 PF01336 OB-fold nucleic acid binding domain CPQ89_04470 PF00854 POT family CPQ89_04485 PF14748 Pyrroline-5-carboxylate reductase dimerisation CPQ89_04485 PF03807 NADP oxidoreductase coenzyme F420-dependent CPQ89_04490 PF01979 Amidohydrolase family CPQ89_04495 PF00392 Bacterial regulatory proteins, gntR family CPQ89_04495 PF07702 UTRA domain CPQ89_04505 PF01156 Inosine-uridine preferring nucleoside hydrolase CPQ89_04510 PF03808 Glycosyl transferase WecB/TagA/CpsF family CPQ89_04515 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CPQ89_04515 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CPQ89_04515 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CPQ89_04520 PF02540 NAD synthase CPQ89_04525 PF00271 Helicase conserved C-terminal domain CPQ89_04525 PF09382 RQC domain CPQ89_04525 PF16124 RecQ zinc-binding CPQ89_04525 PF00570 HRDC domain CPQ89_04525 PF00270 DEAD/DEAH box helicase CPQ89_04530 PF00575 S1 RNA binding domain CPQ89_04530 PF17674 HHH domain CPQ89_04530 PF09371 Tex-like protein N-terminal domain CPQ89_04530 PF16921 Tex protein YqgF-like domain CPQ89_04535 PF10263 SprT-like family CPQ89_04545 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CPQ89_04545 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CPQ89_04550 PF05257 CHAP domain CPQ89_04550 PF01476 LysM domain CPQ89_04555 PF03816 Cell envelope-related transcriptional attenuator domain CPQ89_04565 PF00300 Histidine phosphatase superfamily (branch 1) CPQ89_04575 PF00665 Integrase core domain CPQ89_04575 PF13276 HTH-like domain CPQ89_04575 PF13333 Integrase core domain CPQ89_04580 PF03051 Peptidase C1-like family CPQ89_04585 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CPQ89_04595 PF00692 dUTPase CPQ89_04600 PF18073 Rubredoxin metal binding domain CPQ89_04610 PF00749 tRNA synthetases class I (E and Q), catalytic domain CPQ89_04615 PF01406 tRNA synthetases class I (C) catalytic domain CPQ89_04615 PF09190 DALR domain CPQ89_04620 PF00636 Ribonuclease III domain CPQ89_04625 PF00588 SpoU rRNA Methylase family CPQ89_04625 PF08032 RNA 2'-O ribose methyltransferase substrate binding CPQ89_04635 PF12833 Helix-turn-helix domain CPQ89_04645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPQ89_04645 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPQ89_04655 PF04203 Sortase domain CPQ89_04660 PF00471 Ribosomal protein L33 CPQ89_04670 PF02357 Transcription termination factor nusG CPQ89_04670 PF00467 KOW motif CPQ89_04680 PF00298 Ribosomal protein L11, RNA binding domain CPQ89_04680 PF03946 Ribosomal protein L11, N-terminal domain CPQ89_04685 PF00687 Ribosomal protein L1p/L10e family CPQ89_04690 PF00466 Ribosomal protein L10 CPQ89_04695 PF00542 Ribosomal protein L7/L12 C-terminal domain CPQ89_04695 PF16320 Ribosomal protein L7/L12 dimerisation domain CPQ89_04710 PF13409 Glutathione S-transferase, N-terminal domain CPQ89_04715 PF09924 Uncharacterised conserved protein (DUF2156) CPQ89_04715 PF03706 Lysylphosphatidylglycerol synthase TM region CPQ89_04720 PF00268 Ribonucleotide reductase, small chain CPQ89_04725 PF00317 Ribonucleotide reductase, all-alpha domain CPQ89_04725 PF02867 Ribonucleotide reductase, barrel domain CPQ89_04725 PF08343 Ribonucleotide reductase N-terminal CPQ89_04730 PF07972 NrdI Flavodoxin like CPQ89_04735 PF00462 Glutaredoxin CPQ89_04745 PF00871 Acetokinase family CPQ89_04750 PF14572 Phosphoribosyl synthetase-associated domain CPQ89_04750 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CPQ89_04755 PF12705 PD-(D/E)XK nuclease superfamily CPQ89_04760 PF12705 PD-(D/E)XK nuclease superfamily CPQ89_04760 PF00580 UvrD/REP helicase N-terminal domain CPQ89_04760 PF13361 UvrD-like helicase C-terminal domain CPQ89_04765 PF00689 Cation transporting ATPase, C-terminus CPQ89_04765 PF00690 Cation transporter/ATPase, N-terminus CPQ89_04770 PF00005 ABC transporter CPQ89_04770 PF12848 ABC transporter CPQ89_04775 PF03734 L,D-transpeptidase catalytic domain CPQ89_04780 PF03734 L,D-transpeptidase catalytic domain CPQ89_04790 PF03577 Peptidase family C69 CPQ89_04800 PF09383 NIL domain CPQ89_04800 PF00005 ABC transporter CPQ89_04805 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_04810 PF03180 NLPA lipoprotein CPQ89_04815 PF00571 CBS domain CPQ89_04815 PF01595 Cyclin M transmembrane N-terminal domain CPQ89_04815 PF03471 Transporter associated domain CPQ89_04820 PF00293 NUDIX domain CPQ89_04825 PF00271 Helicase conserved C-terminal domain CPQ89_04825 PF04851 Type III restriction enzyme, res subunit CPQ89_04830 PF00571 CBS domain CPQ89_04830 PF00478 IMP dehydrogenase / GMP reductase domain CPQ89_04835 PF00005 ABC transporter CPQ89_04835 PF12704 MacB-like periplasmic core domain CPQ89_04835 PF02687 FtsX-like permease family CPQ89_04850 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CPQ89_04850 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CPQ89_04860 PF01741 Large-conductance mechanosensitive channel, MscL CPQ89_04865 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CPQ89_04865 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CPQ89_04875 PF09335 SNARE associated Golgi protein CPQ89_04895 PF02073 Thermophilic metalloprotease (M29) CPQ89_04900 PF02350 UDP-N-acetylglucosamine 2-epimerase CPQ89_04910 PF00258 Flavodoxin CPQ89_04915 PF00557 Metallopeptidase family M24 CPQ89_04920 PF00483 Nucleotidyl transferase CPQ89_04925 PF05257 CHAP domain CPQ89_04925 PF01476 LysM domain CPQ89_04930 PF03631 Virulence factor BrkB CPQ89_04935 PF02631 RecX family CPQ89_04940 PF01938 TRAM domain CPQ89_04940 PF05958 tRNA (Uracil-5-)-methyltransferase CPQ89_04945 PF04167 Protein of unknown function (DUF402) CPQ89_04950 PF01594 AI-2E family transporter CPQ89_04955 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CPQ89_04955 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CPQ89_04960 PF13333 Integrase core domain CPQ89_04960 PF00665 Integrase core domain CPQ89_04960 PF13276 HTH-like domain CPQ89_04970 PF04138 GtrA-like protein CPQ89_04975 PF00005 ABC transporter CPQ89_04980 PF00571 CBS domain CPQ89_04980 PF03471 Transporter associated domain CPQ89_04980 PF01595 Cyclin M transmembrane N-terminal domain CPQ89_04985 PF00009 Elongation factor Tu GTP binding domain CPQ89_04985 PF16658 Class II release factor RF3, C-terminal domain CPQ89_04985 PF03144 Elongation factor Tu domain 2 CPQ89_05000 PF10431 C-terminal, D2-small domain, of ClpB protein CPQ89_05000 PF07724 AAA domain (Cdc48 subfamily) CPQ89_05000 PF17871 AAA lid domain CPQ89_05000 PF00004 ATPase family associated with various cellular activities (AAA) CPQ89_05010 PF00381 PTS HPr component phosphorylation site CPQ89_05015 PF00391 PEP-utilising enzyme, mobile domain CPQ89_05015 PF02896 PEP-utilising enzyme, TIM barrel domain CPQ89_05015 PF05524 PEP-utilising enzyme, N-terminal CPQ89_05020 PF00534 Glycosyl transferases group 1 CPQ89_05020 PF13439 Glycosyltransferase Family 4 CPQ89_05025 PF00534 Glycosyl transferases group 1 CPQ89_05025 PF13439 Glycosyltransferase Family 4 CPQ89_05045 PF00884 Sulfatase CPQ89_05130 PF03601 Conserved hypothetical protein 698 CPQ89_05135 PF04023 FeoA domain CPQ89_05135 PF07664 Ferrous iron transport protein B C terminus CPQ89_05135 PF17910 FeoB cytosolic helical domain CPQ89_05135 PF02421 Ferrous iron transport protein B CPQ89_05135 PF07670 Nucleoside recognition CPQ89_05165 PF03167 Uracil DNA glycosylase superfamily CPQ89_05170 PF01515 Phosphate acetyl/butaryl transferase CPQ89_05175 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CPQ89_05180 PF00929 Exonuclease CPQ89_05180 PF02811 PHP domain CPQ89_05180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CPQ89_05180 PF07733 Bacterial DNA polymerase III alpha NTPase domain CPQ89_05180 PF14579 Helix-hairpin-helix motif CPQ89_05180 PF11490 DNA polymerase III polC-type N-terminus II CPQ89_05185 PF03372 Endonuclease/Exonuclease/phosphatase family CPQ89_05190 PF01565 FAD binding domain CPQ89_05190 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CPQ89_05200 PF02457 DisA bacterial checkpoint controller nucleotide-binding CPQ89_05205 PF07949 YbbR-like protein CPQ89_05210 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPQ89_05210 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPQ89_05210 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPQ89_05210 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPQ89_05220 PF13333 Integrase core domain CPQ89_05220 PF00665 Integrase core domain CPQ89_05220 PF13276 HTH-like domain CPQ89_05230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CPQ89_05230 PF02806 Alpha amylase, C-terminal all-beta domain CPQ89_05230 PF00128 Alpha amylase, catalytic domain CPQ89_05235 PF00483 Nucleotidyl transferase CPQ89_05235 PF00132 Bacterial transferase hexapeptide (six repeats) CPQ89_05240 PF00483 Nucleotidyl transferase CPQ89_05245 PF08323 Starch synthase catalytic domain CPQ89_05245 PF00534 Glycosyl transferases group 1 CPQ89_05250 PF00343 Carbohydrate phosphorylase CPQ89_05255 PF00128 Alpha amylase, catalytic domain CPQ89_05255 PF02903 Alpha amylase, N-terminal ig-like domain CPQ89_05255 PF00686 Starch binding domain CPQ89_05260 PF12849 PBP superfamily domain CPQ89_05265 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_05270 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_05275 PF00005 ABC transporter CPQ89_05280 PF00005 ABC transporter CPQ89_05285 PF01895 PhoU domain CPQ89_05290 PF01116 Fructose-bisphosphate aldolase class-II CPQ89_05300 PF03006 Haemolysin-III related CPQ89_05305 PF01022 Bacterial regulatory protein, arsR family CPQ89_05350 PF06458 MucBP domain CPQ89_05355 PF00005 ABC transporter CPQ89_05360 PF02653 Branched-chain amino acid transport system / permease component CPQ89_05380 PF00884 Sulfatase CPQ89_05385 PF06800 Sugar transport protein CPQ89_05390 PF00342 Phosphoglucose isomerase CPQ89_05400 PF00230 Major intrinsic protein CPQ89_05410 PF00924 Mechanosensitive ion channel CPQ89_05425 PF00557 Metallopeptidase family M24 CPQ89_05425 PF01321 Creatinase/Prolidase N-terminal domain CPQ89_05430 PF00356 Bacterial regulatory proteins, lacI family CPQ89_05440 PF01709 Transcriptional regulator CPQ89_05445 PF00294 pfkB family carbohydrate kinase CPQ89_05450 PF00437 Type II/IV secretion system protein CPQ89_05455 PF00482 Type II secretion system (T2SS), protein F CPQ89_05460 PF07963 Prokaryotic N-terminal methylation motif CPQ89_05485 PF02384 N-6 DNA Methylase CPQ89_05490 PF00324 Amino acid permease CPQ89_05495 PF06265 Protein of unknown function (DUF1027) CPQ89_05500 PF13344 Haloacid dehalogenase-like hydrolase CPQ89_05510 PF09335 SNARE associated Golgi protein CPQ89_05515 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPQ89_05520 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CPQ89_05525 PF00575 S1 RNA binding domain CPQ89_05650 PF02772 S-adenosylmethionine synthetase, central domain CPQ89_05650 PF02773 S-adenosylmethionine synthetase, C-terminal domain CPQ89_05650 PF00438 S-adenosylmethionine synthetase, N-terminal domain CPQ89_05660 PF01476 LysM domain CPQ89_05660 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CPQ89_05665 PF08264 Anticodon-binding domain of tRNA CPQ89_05665 PF00133 tRNA synthetases class I (I, L, M and V) CPQ89_05665 PF13603 Leucyl-tRNA synthetase, Domain 2 CPQ89_05665 PF09334 tRNA synthetases class I (M) CPQ89_05670 PF00324 Amino acid permease CPQ89_05675 PF14667 Polysaccharide biosynthesis C-terminal domain CPQ89_05675 PF01943 Polysaccharide biosynthesis protein CPQ89_05680 PF00849 RNA pseudouridylate synthase CPQ89_05680 PF01479 S4 domain CPQ89_05685 PF01256 Carbohydrate kinase CPQ89_05690 PF01546 Peptidase family M20/M25/M40 CPQ89_05710 PF00582 Universal stress protein family CPQ89_05725 PF13520 Amino acid permease CPQ89_05740 PF00582 Universal stress protein family CPQ89_05750 PF01624 MutS domain I CPQ89_05750 PF05190 MutS family domain IV CPQ89_05750 PF05188 MutS domain II CPQ89_05750 PF05192 MutS domain III CPQ89_05750 PF00488 MutS domain V CPQ89_05755 PF01119 DNA mismatch repair protein, C-terminal domain CPQ89_05755 PF08676 MutL C terminal dimerisation domain CPQ89_05760 PF07499 RuvA, C-terminal domain CPQ89_05760 PF01330 RuvA N terminal domain CPQ89_05765 PF05496 Holliday junction DNA helicase RuvB P-loop domain CPQ89_05765 PF05491 RuvB C-terminal winged helix domain CPQ89_05765 PF17864 RuvB AAA lid domain CPQ89_05770 PF02547 Queuosine biosynthesis protein CPQ89_05775 PF01702 Queuine tRNA-ribosyltransferase CPQ89_05780 PF02699 Preprotein translocase subunit CPQ89_05785 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CPQ89_05785 PF00056 lactate/malate dehydrogenase, NAD binding domain CPQ89_05790 PF00703 Glycosyl hydrolases family 2 CPQ89_05790 PF02929 Beta galactosidase small chain CPQ89_05790 PF16353 Domain of unknown function(DUF4981) CPQ89_05790 PF02837 Glycosyl hydrolases family 2, sugar binding domain CPQ89_05790 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CPQ89_05795 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CPQ89_05800 PF00464 Serine hydroxymethyltransferase CPQ89_05805 PF00356 Bacterial regulatory proteins, lacI family CPQ89_05810 PF10509 Galactokinase galactose-binding signature CPQ89_05810 PF08544 GHMP kinases C terminal CPQ89_05810 PF00288 GHMP kinases N terminal domain CPQ89_05815 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CPQ89_05815 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CPQ89_05820 PF16875 Glycosyl hydrolase family 36 N-terminal domain CPQ89_05820 PF16874 Glycosyl hydrolase family 36 C-terminal domain CPQ89_05835 PF01047 MarR family CPQ89_05845 PF00364 Biotin-requiring enzyme CPQ89_05850 PF07977 FabA-like domain CPQ89_05855 PF02785 Biotin carboxylase C-terminal domain CPQ89_05855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPQ89_05855 PF00289 Biotin carboxylase, N-terminal domain CPQ89_05860 PF17848 Acetyl-coA carboxylase zinc finger domain CPQ89_05860 PF01039 Carboxyl transferase domain CPQ89_05865 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CPQ89_05875 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CPQ89_05875 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CPQ89_05880 PF00817 impB/mucB/samB family CPQ89_05880 PF11799 impB/mucB/samB family C-terminal domain CPQ89_05885 PF01368 DHH family CPQ89_05885 PF02272 DHHA1 domain CPQ89_05890 PF00271 Helicase conserved C-terminal domain CPQ89_05890 PF00270 DEAD/DEAH box helicase CPQ89_05910 PF13280 WYL domain CPQ89_05910 PF08279 HTH domain CPQ89_05945 PF09035 Excisionase from transposon Tn916 CPQ89_05950 PF00589 Phage integrase family CPQ89_05950 PF02920 DNA binding domain of tn916 integrase CPQ89_05965 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPQ89_05965 PF01411 tRNA synthetases class II (A) CPQ89_05965 PF02272 DHHA1 domain CPQ89_05970 PF06135 IreB regulatory phosphoprotein CPQ89_05975 PF03652 Holliday junction resolvase CPQ89_05980 PF06949 Protein of unknown function (DUF1292) CPQ89_05995 PF00488 MutS domain V CPQ89_05995 PF01713 Smr domain CPQ89_06000 PF00085 Thioredoxin CPQ89_06005 PF10702 Protein of unknown function (DUF2507) CPQ89_06010 PF01725 Ham1 family CPQ89_06015 PF12850 Calcineurin-like phosphoesterase superfamily domain CPQ89_06030 PF00665 Integrase core domain CPQ89_06030 PF13333 Integrase core domain CPQ89_06030 PF13276 HTH-like domain CPQ89_06045 PF13520 Amino acid permease CPQ89_06055 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_06060 PF00005 ABC transporter CPQ89_06070 PF07690 Major Facilitator Superfamily CPQ89_06090 PF01238 Phosphomannose isomerase type I CPQ89_06100 PF06013 Proteins of 100 residues with WXG CPQ89_06120 PF10140 WXG100 protein secretion system (Wss), protein YukC CPQ89_06125 PF01580 FtsK/SpoIIIE family CPQ89_06220 PF07685 CobB/CobQ-like glutamine amidotransferase domain CPQ89_06225 PF08245 Mur ligase middle domain CPQ89_06225 PF08353 Domain of unknown function (DUF1727) CPQ89_06230 PF00265 Thymidine kinase CPQ89_06235 PF00472 RF-1 domain CPQ89_06235 PF03462 PCRF domain CPQ89_06240 PF05175 Methyltransferase small domain CPQ89_06240 PF17827 PrmC N-terminal domain CPQ89_06245 PF01300 Telomere recombination CPQ89_06245 PF03481 Putative GTP-binding controlling metal-binding CPQ89_06255 PF00119 ATP synthase A chain CPQ89_06260 PF00137 ATP synthase subunit C CPQ89_06265 PF00430 ATP synthase B/B' CF(0) CPQ89_06270 PF00213 ATP synthase delta (OSCP) subunit CPQ89_06275 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPQ89_06275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPQ89_06275 PF00306 ATP synthase alpha/beta chain, C terminal domain CPQ89_06280 PF00231 ATP synthase CPQ89_06285 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPQ89_06285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPQ89_06290 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CPQ89_06290 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CPQ89_06300 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPQ89_06310 PF01809 Putative membrane protein insertion efficiency factor CPQ89_06320 PF01098 Cell cycle protein CPQ89_06325 PF03960 ArsC family CPQ89_06330 PF07722 Peptidase C26 CPQ89_06335 PF00005 ABC transporter CPQ89_06340 PF01458 Uncharacterized protein family (UPF0051) CPQ89_06345 PF00266 Aminotransferase class-V CPQ89_06350 PF01592 NifU-like N terminal domain CPQ89_06355 PF01458 Uncharacterized protein family (UPF0051) CPQ89_06360 PF00072 Response regulator receiver domain CPQ89_06360 PF04397 LytTr DNA-binding domain CPQ89_06365 PF00005 ABC transporter CPQ89_06375 PF01381 Helix-turn-helix CPQ89_06390 PF00005 ABC transporter CPQ89_06405 PF13520 Amino acid permease CPQ89_06415 PF01820 D-ala D-ala ligase N-terminus CPQ89_06415 PF07478 D-ala D-ala ligase C-terminus CPQ89_06425 PF03352 Methyladenine glycosylase CPQ89_06435 PF13276 HTH-like domain CPQ89_06435 PF13333 Integrase core domain CPQ89_06435 PF00665 Integrase core domain CPQ89_06440 PF00582 Universal stress protein family CPQ89_06450 PF12002 MgsA AAA+ ATPase C terminal CPQ89_06450 PF16193 AAA C-terminal domain CPQ89_06450 PF05496 Holliday junction DNA helicase RuvB P-loop domain CPQ89_06455 PF18419 ATP-grasp-like domain CPQ89_06455 PF04262 Glutamate-cysteine ligase CPQ89_06465 PF01479 S4 domain CPQ89_06465 PF00163 Ribosomal protein S4/S9 N-terminal domain CPQ89_06470 PF01522 Polysaccharide deacetylase CPQ89_06480 PF13185 GAF domain CPQ89_06485 PF06160 Septation ring formation regulator, EzrA CPQ89_06490 PF00266 Aminotransferase class-V CPQ89_06495 PF02568 Thiamine biosynthesis protein (ThiI) CPQ89_06495 PF02926 THUMP domain CPQ89_06500 PF08264 Anticodon-binding domain of tRNA CPQ89_06500 PF00133 tRNA synthetases class I (I, L, M and V) CPQ89_06500 PF10458 Valyl tRNA synthetase tRNA binding arm CPQ89_06505 PF08245 Mur ligase middle domain CPQ89_06505 PF02875 Mur ligase family, glutamate ligase domain CPQ89_06515 PF04002 RadC-like JAB domain CPQ89_06520 PF00313 'Cold-shock' DNA-binding domain CPQ89_06540 PF03775 Septum formation inhibitor MinC, C-terminal domain CPQ89_06545 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CPQ89_06550 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_06555 PF00005 ABC transporter CPQ89_06560 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPQ89_06565 PF13091 PLD-like domain CPQ89_06565 PF13396 Phospholipase_D-nuclease N-terminal CPQ89_06585 PF01795 MraW methylase family CPQ89_06595 PF03717 Penicillin-binding Protein dimerisation domain CPQ89_06595 PF03793 PASTA domain CPQ89_06595 PF00905 Penicillin binding protein transpeptidase domain CPQ89_06600 PF00953 Glycosyl transferase family 4 CPQ89_06605 PF08245 Mur ligase middle domain CPQ89_06605 PF02875 Mur ligase family, glutamate ligase domain CPQ89_06605 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CPQ89_06610 PF04101 Glycosyltransferase family 28 C-terminal domain CPQ89_06610 PF03033 Glycosyltransferase family 28 N-terminal domain CPQ89_06615 PF03799 Cell division protein FtsQ CPQ89_06620 PF02491 SHS2 domain inserted in FTSA CPQ89_06620 PF11983 Membrane-attachment and polymerisation-promoting switch CPQ89_06625 PF12327 FtsZ family, C-terminal domain CPQ89_06625 PF00091 Tubulin/FtsZ family, GTPase domain CPQ89_06630 PF04472 Cell division protein SepF CPQ89_06640 PF17774 Putative RNA-binding domain in YlmH CPQ89_06640 PF01479 S4 domain CPQ89_06645 PF05103 DivIVA protein CPQ89_06650 PF08264 Anticodon-binding domain of tRNA CPQ89_06650 PF00133 tRNA synthetases class I (I, L, M and V) CPQ89_06650 PF06827 Zinc finger found in FPG and IleRS CPQ89_06655 PF00293 NUDIX domain CPQ89_06665 PF01048 Phosphorylase superfamily CPQ89_06670 PF00266 Aminotransferase class-V CPQ89_06685 PF00300 Histidine phosphatase superfamily (branch 1) CPQ89_06695 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CPQ89_06695 PF14490 Helix-hairpin-helix containing domain CPQ89_06695 PF13538 UvrD-like helicase C-terminal domain CPQ89_06700 PF00781 Diacylglycerol kinase catalytic domain CPQ89_06705 PF00753 Metallo-beta-lactamase superfamily CPQ89_06705 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CPQ89_06705 PF17770 Ribonuclease J C-terminal domain CPQ89_06710 PF07288 Protein of unknown function (DUF1447) CPQ89_06720 PF01327 Polypeptide deformylase CPQ89_06730 PF05256 Uncharacterised protein family (UPF0223) CPQ89_06735 PF00459 Inositol monophosphatase family CPQ89_06740 PF14492 Elongation Factor G, domain II CPQ89_06740 PF00009 Elongation factor Tu GTP binding domain CPQ89_06740 PF03144 Elongation factor Tu domain 2 CPQ89_06740 PF00679 Elongation factor G C-terminus CPQ89_06745 PF07408 Protein of unknown function (DUF1507) CPQ89_06750 PF01098 Cell cycle protein CPQ89_06755 PF00364 Biotin-requiring enzyme CPQ89_06755 PF02785 Biotin carboxylase C-terminal domain CPQ89_06755 PF00682 HMGL-like CPQ89_06755 PF00289 Biotin carboxylase, N-terminal domain CPQ89_06755 PF02436 Conserved carboxylase domain CPQ89_06755 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPQ89_06765 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) CPQ89_06775 PF01467 Cytidylyltransferase-like CPQ89_06785 PF10531 SLBB domain CPQ89_06790 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CPQ89_06800 PF06144 DNA polymerase III, delta subunit CPQ89_06805 PF01649 Ribosomal protein S20 CPQ89_06810 PF00312 Ribosomal protein S15 CPQ89_06815 PF17770 Ribonuclease J C-terminal domain CPQ89_06815 PF00753 Metallo-beta-lactamase superfamily CPQ89_06815 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CPQ89_06825 PF03143 Elongation factor Tu C-terminal domain CPQ89_06825 PF03144 Elongation factor Tu domain 2 CPQ89_06825 PF00009 Elongation factor Tu GTP binding domain CPQ89_06830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CPQ89_06830 PF05698 Bacterial trigger factor protein (TF) C-terminus CPQ89_06830 PF05697 Bacterial trigger factor protein (TF) CPQ89_06835 PF07724 AAA domain (Cdc48 subfamily) CPQ89_06835 PF10431 C-terminal, D2-small domain, of ClpB protein CPQ89_06835 PF06689 ClpX C4-type zinc finger CPQ89_06840 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CPQ89_06840 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CPQ89_06845 PF00486 Transcriptional regulatory protein, C terminal CPQ89_06845 PF00072 Response regulator receiver domain CPQ89_06850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPQ89_06850 PF00512 His Kinase A (phospho-acceptor) domain CPQ89_06850 PF18719 ArlS sensor domain CPQ89_06855 PF02096 60Kd inner membrane protein CPQ89_06860 PF00708 Acylphosphatase CPQ89_06865 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CPQ89_06865 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CPQ89_06905 PF06421 GTP-binding protein LepA C-terminus CPQ89_06905 PF03144 Elongation factor Tu domain 2 CPQ89_06905 PF00009 Elongation factor Tu GTP binding domain CPQ89_06905 PF00679 Elongation factor G C-terminus CPQ89_06910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPQ89_06910 PF00005 ABC transporter CPQ89_06915 PF00005 ABC transporter CPQ89_06915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPQ89_06920 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_06925 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_06930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPQ89_06940 PF00665 Integrase core domain CPQ89_06940 PF13936 Helix-turn-helix domain CPQ89_06945 PF00707 Translation initiation factor IF-3, C-terminal domain CPQ89_06945 PF05198 Translation initiation factor IF-3, N-terminal domain CPQ89_06950 PF01632 Ribosomal protein L35 CPQ89_06955 PF00453 Ribosomal protein L20 CPQ89_06965 PF01926 50S ribosome-binding GTPase CPQ89_06975 PF01467 Cytidylyltransferase-like CPQ89_06980 PF01966 HD domain CPQ89_06990 PF13649 Methyltransferase domain CPQ89_06995 PF05636 HIGH Nucleotidyl Transferase CPQ89_07005 PF01783 Ribosomal L32p protein family CPQ89_07010 PF01926 50S ribosome-binding GTPase CPQ89_07020 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_07025 PF00005 ABC transporter CPQ89_07030 PF02151 UvrB/uvrC motif CPQ89_07030 PF08459 UvrC Helix-hairpin-helix N-terminal CPQ89_07030 PF01541 GIY-YIG catalytic domain CPQ89_07035 PF01926 50S ribosome-binding GTPase CPQ89_07035 PF09269 Domain of unknown function (DUF1967) CPQ89_07035 PF01018 GTP1/OBG CPQ89_07040 PF01757 Acyltransferase family CPQ89_07050 PF00753 Metallo-beta-lactamase superfamily CPQ89_07055 PF00106 short chain dehydrogenase CPQ89_07065 PF17768 RecJ OB domain CPQ89_07065 PF01368 DHH family CPQ89_07065 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CPQ89_07065 PF02272 DHHA1 domain CPQ89_07070 PF00156 Phosphoribosyl transferase domain CPQ89_07075 PF02080 TrkA-C domain CPQ89_07075 PF02254 TrkA-N domain CPQ89_07085 PF00501 AMP-binding enzyme CPQ89_07085 PF13193 AMP-binding enzyme C-terminal domain CPQ89_07090 PF03062 MBOAT, membrane-bound O-acyltransferase family CPQ89_07095 PF00550 Phosphopantetheine attachment site CPQ89_07100 PF04914 DltD protein CPQ89_07110 PF03717 Penicillin-binding Protein dimerisation domain CPQ89_07110 PF00905 Penicillin binding protein transpeptidase domain CPQ89_07115 PF00471 Ribosomal protein L33 CPQ89_07120 PF01694 Rhomboid family CPQ89_07130 PF00480 ROK family CPQ89_07140 PF01145 SPFH domain / Band 7 family CPQ89_07160 PF06838 Methionine gamma-lyase CPQ89_07165 PF13411 MerR HTH family regulatory protein CPQ89_07170 PF03951 Glutamine synthetase, beta-Grasp domain CPQ89_07170 PF00120 Glutamine synthetase, catalytic domain CPQ89_07180 PF00625 Guanylate kinase CPQ89_07185 PF01192 RNA polymerase Rpb6 CPQ89_07190 PF04127 DNA / pantothenate metabolism flavoprotein CPQ89_07190 PF02441 Flavoprotein CPQ89_07195 PF04851 Type III restriction enzyme, res subunit CPQ89_07195 PF17764 3′ DNA-binding domain (3′BD) CPQ89_07195 PF00271 Helicase conserved C-terminal domain CPQ89_07195 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CPQ89_07195 PF18074 Primosomal protein N C-terminal domain CPQ89_07200 PF00551 Formyl transferase CPQ89_07200 PF02911 Formyl transferase, C-terminal domain CPQ89_07205 PF01029 NusB family CPQ89_07205 PF01189 16S rRNA methyltransferase RsmB/F CPQ89_07215 PF00069 Protein kinase domain CPQ89_07215 PF03793 PASTA domain CPQ89_07220 PF03193 RsgA GTPase CPQ89_07220 PF16745 RsgA N-terminal domain CPQ89_07225 PF00834 Ribulose-phosphate 3 epimerase family CPQ89_07235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPQ89_07240 PF00830 Ribosomal L28 family CPQ89_07245 PF03780 Asp23 family, cell envelope-related function CPQ89_07250 PF02734 DAK2 domain CPQ89_07250 PF13684 Dihydroxyacetone kinase family CPQ89_07255 PF00270 DEAD/DEAH box helicase CPQ89_07255 PF00271 Helicase conserved C-terminal domain CPQ89_07255 PF17191 RecG wedge domain CPQ89_07260 PF02504 Fatty acid synthesis protein CPQ89_07265 PF00550 Phosphopantetheine attachment site CPQ89_07270 PF14622 Ribonuclease-III-like CPQ89_07270 PF00035 Double-stranded RNA binding motif CPQ89_07275 PF02463 RecF/RecN/SMC N terminal domain CPQ89_07275 PF06470 SMC proteins Flexible Hinge Domain CPQ89_07280 PF00448 SRP54-type protein, GTPase domain CPQ89_07280 PF02881 SRP54-type protein, helical bundle domain CPQ89_07285 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CPQ89_07290 PF02881 SRP54-type protein, helical bundle domain CPQ89_07290 PF00448 SRP54-type protein, GTPase domain CPQ89_07290 PF02978 Signal peptide binding domain CPQ89_07295 PF00886 Ribosomal protein S16 CPQ89_07305 PF01782 RimM N-terminal domain CPQ89_07305 PF05239 PRC-barrel domain CPQ89_07310 PF01746 tRNA (Guanine-1)-methyltransferase CPQ89_07315 PF00583 Acetyltransferase (GNAT) family CPQ89_07320 PF01245 Ribosomal protein L19 CPQ89_07325 PF13333 Integrase core domain CPQ89_07325 PF00665 Integrase core domain CPQ89_07325 PF13276 HTH-like domain CPQ89_07345 PF01638 HxlR-like helix-turn-helix CPQ89_07350 PF01409 tRNA synthetases class II core domain (F) CPQ89_07350 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CPQ89_07355 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CPQ89_07355 PF03147 Ferredoxin-fold anticodon binding domain CPQ89_07355 PF03484 tRNA synthetase B5 domain CPQ89_07355 PF03483 B3/4 domain CPQ89_07355 PF01588 Putative tRNA binding domain CPQ89_07365 PF00665 Integrase core domain CPQ89_07365 PF13276 HTH-like domain CPQ89_07365 PF13333 Integrase core domain CPQ89_07370 PF02618 YceG-like family CPQ89_07375 PF00485 Phosphoribulokinase / Uridine kinase family CPQ89_07380 PF01272 Transcription elongation factor, GreA/GreB, C-term CPQ89_07380 PF03449 Transcription elongation factor, N-terminal CPQ89_07390 PF13333 Integrase core domain CPQ89_07390 PF13276 HTH-like domain CPQ89_07390 PF00665 Integrase core domain CPQ89_07400 PF01156 Inosine-uridine preferring nucleoside hydrolase CPQ89_07415 PF04452 RNA methyltransferase CPQ89_07425 PF02824 TGS domain CPQ89_07425 PF04607 Region found in RelA / SpoT proteins CPQ89_07425 PF13291 ACT domain CPQ89_07430 PF02580 D-Tyr-tRNA(Tyr) deacylase CPQ89_07440 PF08032 RNA 2'-O ribose methyltransferase substrate binding CPQ89_07440 PF00588 SpoU rRNA Methylase family CPQ89_07450 PF01321 Creatinase/Prolidase N-terminal domain CPQ89_07450 PF00557 Metallopeptidase family M24 CPQ89_07455 PF09285 Elongation factor P, C-terminal CPQ89_07455 PF01132 Elongation factor P (EF-P) OB domain CPQ89_07455 PF08207 Elongation factor P (EF-P) KOW-like domain CPQ89_07460 PF03780 Asp23 family, cell envelope-related function CPQ89_07465 PF01029 NusB family CPQ89_07470 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CPQ89_07470 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CPQ89_07475 PF13742 OB-fold nucleic acid binding domain CPQ89_07475 PF02601 Exonuclease VII, large subunit CPQ89_07480 PF02609 Exonuclease VII small subunit CPQ89_07485 PF00348 Polyprenyl synthetase CPQ89_07490 PF01728 FtsJ-like methyltransferase CPQ89_07490 PF01479 S4 domain CPQ89_07495 PF02863 Arginine repressor, C-terminal domain CPQ89_07495 PF01316 Arginine repressor, DNA binding domain CPQ89_07500 PF13476 AAA domain CPQ89_07505 PF01726 LexA DNA binding domain CPQ89_07505 PF00717 Peptidase S24-like CPQ89_07510 PF05979 Bacterial protein of unknown function (DUF896) CPQ89_07515 PF03672 Uncharacterised protein family (UPF0154) CPQ89_07520 PF01553 Acyltransferase CPQ89_07525 PF05175 Methyltransferase small domain CPQ89_07530 PF01541 GIY-YIG catalytic domain CPQ89_07535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPQ89_07535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CPQ89_07540 PF00318 Ribosomal protein S2 CPQ89_07545 PF00889 Elongation factor TS CPQ89_07550 PF17783 CvfB-like winged helix domain CPQ89_07550 PF13509 S1 domain CPQ89_07555 PF01475 Ferric uptake regulator family CPQ89_07560 PF02899 Phage integrase, N-terminal SAM-like domain CPQ89_07560 PF00589 Phage integrase family CPQ89_07565 PF00583 Acetyltransferase (GNAT) family CPQ89_07570 PF02616 Segregation and condensation protein ScpA CPQ89_07575 PF04079 Segregation and condensation complex subunit ScpB CPQ89_07580 PF00849 RNA pseudouridylate synthase CPQ89_07580 PF01479 S4 domain CPQ89_07585 PF12822 ECF transporter, substrate-specific component CPQ89_07590 PF01566 Natural resistance-associated macrophage protein CPQ89_07595 PF14493 Helix-turn-helix domain CPQ89_07600 PF00271 Helicase conserved C-terminal domain CPQ89_07600 PF00270 DEAD/DEAH box helicase CPQ89_07610 PF02224 Cytidylate kinase CPQ89_07615 PF00575 S1 RNA binding domain CPQ89_07620 PF01926 50S ribosome-binding GTPase CPQ89_07620 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CPQ89_07625 PF00216 Bacterial DNA-binding protein CPQ89_07635 PF00072 Response regulator receiver domain CPQ89_07635 PF00486 Transcriptional regulatory protein, C terminal CPQ89_07640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPQ89_07645 PF00005 ABC transporter CPQ89_07670 PF01906 Putative heavy-metal-binding CPQ89_07680 PF03577 Peptidase family C69 CPQ89_07685 PF01361 Tautomerase enzyme CPQ89_07695 PF00326 Prolyl oligopeptidase family CPQ89_07700 PF01883 Iron-sulfur cluster assembly protein CPQ89_07710 PF01189 16S rRNA methyltransferase RsmB/F CPQ89_07710 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CPQ89_07710 PF17126 RsmF rRNA methyltransferase first C-terminal domain CPQ89_07725 PF01433 Peptidase family M1 domain CPQ89_07725 PF11838 ERAP1-like C-terminal domain CPQ89_07730 PF01070 FMN-dependent dehydrogenase CPQ89_07735 PF00288 GHMP kinases N terminal domain CPQ89_07735 PF08544 GHMP kinases C terminal CPQ89_07745 PF10509 Galactokinase galactose-binding signature CPQ89_07745 PF08544 GHMP kinases C terminal CPQ89_07745 PF00288 GHMP kinases N terminal domain CPQ89_07750 PF00929 Exonuclease CPQ89_07750 PF13307 Helicase C-terminal domain CPQ89_07750 PF04851 Type III restriction enzyme, res subunit CPQ89_07760 PF00155 Aminotransferase class I and II CPQ89_07765 PF00152 tRNA synthetases class II (D, K and N) CPQ89_07765 PF01336 OB-fold nucleic acid binding domain CPQ89_07775 PF00633 Helix-hairpin-helix motif CPQ89_07775 PF10576 Iron-sulfur binding domain of endonuclease III CPQ89_07775 PF00730 HhH-GPD superfamily base excision DNA repair protein CPQ89_07780 PF00375 Sodium:dicarboxylate symporter family CPQ89_07785 PF00912 Transglycosylase CPQ89_07785 PF00905 Penicillin binding protein transpeptidase domain CPQ89_07790 PF03838 Recombination protein U CPQ89_07795 PF06908 YspA SLOG family CPQ89_07825 PF05103 DivIVA protein CPQ89_07835 PF02926 THUMP domain CPQ89_07835 PF01170 Putative RNA methylase family UPF0020 CPQ89_07840 PF13456 Reverse transcriptase-like CPQ89_07850 PF01268 Formate--tetrahydrofolate ligase CPQ89_07855 PF01252 Signal peptidase (SPase) II CPQ89_07860 PF00849 RNA pseudouridylate synthase CPQ89_07860 PF01479 S4 domain CPQ89_07865 PF00156 Phosphoribosyl transferase domain CPQ89_07870 PF00860 Permease family CPQ89_07875 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CPQ89_07875 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CPQ89_07880 PF01979 Amidohydrolase family CPQ89_07885 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CPQ89_07885 PF00117 Glutamine amidotransferase class-I CPQ89_07890 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CPQ89_07890 PF02142 MGS-like domain CPQ89_07890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPQ89_07895 PF01180 Dihydroorotate dehydrogenase CPQ89_07900 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CPQ89_07905 PF00156 Phosphoribosyl transferase domain CPQ89_07910 PF03816 Cell envelope-related transcriptional attenuator domain CPQ89_07915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPQ89_07915 PF03466 LysR substrate binding domain CPQ89_07920 PF02833 DHHA2 domain CPQ89_07920 PF01368 DHH family CPQ89_07930 PF02632 BioY family CPQ89_07935 PF00155 Aminotransferase class I and II CPQ89_07940 PF01177 Asp/Glu/Hydantoin racemase CPQ89_07980 PF00293 NUDIX domain CPQ89_07980 PF09297 NADH pyrophosphatase zinc ribbon domain CPQ89_07985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPQ89_07985 PF01751 Toprim domain CPQ89_07985 PF00986 DNA gyrase B subunit, carboxyl terminus CPQ89_07985 PF00204 DNA gyrase B CPQ89_07990 PF00521 DNA gyrase/topoisomerase IV, subunit A CPQ89_07990 PF03989 DNA gyrase C-terminal domain, beta-propeller CPQ89_07995 PF05670 NFACT protein RNA binding domain CPQ89_08000 PF02645 Uncharacterised protein, DegV family COG1307 CPQ89_08010 PF10502 Signal peptidase, peptidase S26 CPQ89_08030 PF02660 Glycerol-3-phosphate acyltransferase CPQ89_08040 PF00665 Integrase core domain CPQ89_08040 PF13276 HTH-like domain CPQ89_08040 PF13333 Integrase core domain CPQ89_08050 PF07724 AAA domain (Cdc48 subfamily) CPQ89_08050 PF10431 C-terminal, D2-small domain, of ClpB protein CPQ89_08050 PF00004 ATPase family associated with various cellular activities (AAA) CPQ89_08060 PF00227 Proteasome subunit CPQ89_08065 PF00589 Phage integrase family CPQ89_08065 PF02899 Phage integrase, N-terminal SAM-like domain CPQ89_08070 PF01134 Glucose inhibited division protein A CPQ89_08075 PF01396 Topoisomerase DNA binding C4 zinc finger CPQ89_08075 PF01751 Toprim domain CPQ89_08075 PF01131 DNA topoisomerase CPQ89_08080 PF18255 DNA processing protein A sterile alpha motif domain CPQ89_08080 PF02481 DNA recombination-mediator protein A CPQ89_08085 PF01351 Ribonuclease HII CPQ89_08090 PF01926 50S ribosome-binding GTPase CPQ89_08095 PF10502 Signal peptidase, peptidase S26 CPQ89_08100 PF01471 Putative peptidoglycan binding domain CPQ89_08100 PF17820 PDZ domain CPQ89_08100 PF03572 Peptidase family S41 CPQ89_08105 PF06855 YozE SAM-like fold CPQ89_08115 PF13472 GDSL-like Lipase/Acylhydrolase family CPQ89_08125 PF00186 Dihydrofolate reductase CPQ89_08130 PF00303 Thymidylate synthase CPQ89_08135 PF16326 ABC transporter C-terminal domain CPQ89_08135 PF12848 ABC transporter CPQ89_08135 PF00005 ABC transporter CPQ89_08140 PF01743 Poly A polymerase head domain CPQ89_08140 PF12627 Probable RNA and SrmB- binding site of polymerase A CPQ89_08140 PF13735 tRNA nucleotidyltransferase domain 2 putative CPQ89_08145 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CPQ89_08145 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CPQ89_08160 PF02774 Semialdehyde dehydrogenase, dimerisation domain CPQ89_08160 PF01118 Semialdehyde dehydrogenase, NAD binding domain CPQ89_08165 PF01113 Dihydrodipicolinate reductase, N-terminus CPQ89_08165 PF05173 Dihydrodipicolinate reductase, C-terminus CPQ89_08170 PF00701 Dihydrodipicolinate synthetase family CPQ89_08175 PF07687 Peptidase dimerisation domain CPQ89_08175 PF01546 Peptidase family M20/M25/M40 CPQ89_08180 PF14602 Hexapeptide repeat of succinyl-transferase CPQ89_08180 PF00132 Bacterial transferase hexapeptide (six repeats) CPQ89_08180 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CPQ89_08185 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CPQ89_08185 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CPQ89_08190 PF01678 Diaminopimelate epimerase CPQ89_08195 PF02887 Pyruvate kinase, alpha/beta domain CPQ89_08195 PF00391 PEP-utilising enzyme, mobile domain CPQ89_08195 PF00224 Pyruvate kinase, barrel domain CPQ89_08200 PF00365 Phosphofructokinase CPQ89_08205 PF01336 OB-fold nucleic acid binding domain CPQ89_08205 PF02811 PHP domain CPQ89_08205 PF14579 Helix-hairpin-helix motif CPQ89_08205 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CPQ89_08205 PF07733 Bacterial DNA polymerase III alpha NTPase domain CPQ89_08215 PF00004 ATPase family associated with various cellular activities (AAA) CPQ89_08215 PF10431 C-terminal, D2-small domain, of ClpB protein CPQ89_08215 PF02861 Clp amino terminal domain, pathogenicity island component CPQ89_08215 PF17871 AAA lid domain CPQ89_08215 PF07724 AAA domain (Cdc48 subfamily) CPQ89_08220 PF07687 Peptidase dimerisation domain CPQ89_08220 PF01546 Peptidase family M20/M25/M40 CPQ89_08225 PF01784 NIF3 (NGG1p interacting factor 3) CPQ89_08230 PF04816 tRNA (adenine(22)-N(1))-methyltransferase CPQ89_08235 PF06782 Uncharacterised protein family (UPF0236) CPQ89_08245 PF00665 Integrase core domain CPQ89_08245 PF13276 HTH-like domain CPQ89_08245 PF13333 Integrase core domain CPQ89_08310 PF08708 Primase C terminal 1 (PriCT-1) CPQ89_08315 PF04545 Sigma-70, region 4 CPQ89_08315 PF04539 Sigma-70 region 3 CPQ89_08315 PF04542 Sigma-70 region 2 CPQ89_08315 PF00140 Sigma-70 factor, region 1.2 CPQ89_08315 PF03979 Sigma-70 factor, region 1.1 CPQ89_08320 PF01807 CHC2 zinc finger CPQ89_08320 PF10410 DnaB-helicase binding domain of primase CPQ89_08320 PF08275 DNA primase catalytic core, N-terminal domain CPQ89_08325 PF08774 VRR-NUC domain CPQ89_08325 PF04851 Type III restriction enzyme, res subunit CPQ89_08330 PF01555 DNA methylase CPQ89_08330 PF18273 Type III R-M EcoP15I C-terminal domain CPQ89_08340 PF18273 Type III R-M EcoP15I C-terminal domain CPQ89_08340 PF01555 DNA methylase CPQ89_08345 PF02092 Glycyl-tRNA synthetase beta subunit CPQ89_08350 PF02091 Glycyl-tRNA synthetase alpha subunit CPQ89_08355 PF03547 Membrane transport protein CPQ89_08360 PF02515 CoA-transferase family III CPQ89_08365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPQ89_08365 PF00205 Thiamine pyrophosphate enzyme, central domain CPQ89_08365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPQ89_08370 PF02565 Recombination protein O C terminal CPQ89_08370 PF11967 Recombination protein O N terminal CPQ89_08375 PF07650 KH domain CPQ89_08375 PF01926 50S ribosome-binding GTPase CPQ89_08380 PF01219 Prokaryotic diacylglycerol kinase CPQ89_08385 PF02130 Uncharacterized protein family UPF0054 CPQ89_08390 PF02562 PhoH-like protein CPQ89_08395 PF09424 Yqey-like protein CPQ89_08400 PF01165 Ribosomal protein S21 CPQ89_08405 PF03618 Kinase/pyrophosphorylase CPQ89_08410 PF01261 Xylose isomerase-like TIM barrel CPQ89_08415 PF00535 Glycosyl transferase family 2 CPQ89_08435 PF00152 tRNA synthetases class II (D, K and N) CPQ89_08435 PF02938 GAD domain CPQ89_08435 PF01336 OB-fold nucleic acid binding domain CPQ89_08440 PF13393 Histidyl-tRNA synthetase CPQ89_08440 PF03129 Anticodon binding domain CPQ89_08450 PF08534 Redoxin CPQ89_08470 PF02885 Glycosyl transferase family, helical bundle domain CPQ89_08470 PF00591 Glycosyl transferase family, a/b domain CPQ89_08470 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CPQ89_08475 PF01048 Phosphorylase superfamily CPQ89_08480 PF01676 Metalloenzyme superfamily CPQ89_08485 PF01791 DeoC/LacD family aldolase CPQ89_08510 PF13333 Integrase core domain CPQ89_08510 PF00665 Integrase core domain CPQ89_08510 PF13276 HTH-like domain CPQ89_08560 PF05866 Endodeoxyribonuclease RusA CPQ89_08640 PF01381 Helix-turn-helix CPQ89_08690 PF01556 DnaJ C terminal domain CPQ89_08690 PF00226 DnaJ domain CPQ89_08690 PF00684 DnaJ central domain CPQ89_08695 PF00012 Hsp70 protein CPQ89_08700 PF01025 GrpE CPQ89_08705 PF01628 HrcA protein C terminal domain CPQ89_08710 PF06574 FAD synthetase CPQ89_08710 PF01687 Riboflavin kinase CPQ89_08715 PF01509 TruB family pseudouridylate synthase (N terminal domain) CPQ89_08715 PF16198 tRNA pseudouridylate synthase B C-terminal domain CPQ89_08720 PF02033 Ribosome-binding factor A CPQ89_08725 PF04760 Translation initiation factor IF-2, N-terminal region CPQ89_08725 PF00009 Elongation factor Tu GTP binding domain CPQ89_08725 PF11987 Translation-initiation factor 2 CPQ89_08730 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CPQ89_08735 PF04296 Protein of unknown function (DUF448) CPQ89_08740 PF08529 NusA N-terminal domain CPQ89_08740 PF00575 S1 RNA binding domain CPQ89_08740 PF13184 NusA-like KH domain CPQ89_08745 PF17384 RimP C-terminal SH3 domain CPQ89_08745 PF02576 RimP N-terminal domain CPQ89_08765 PF11490 DNA polymerase III polC-type N-terminus II CPQ89_08765 PF07733 Bacterial DNA polymerase III alpha NTPase domain CPQ89_08765 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CPQ89_08765 PF14579 Helix-hairpin-helix motif CPQ89_08765 PF02811 PHP domain CPQ89_08765 PF00929 Exonuclease CPQ89_08765 PF14480 DNA polymerase III polC-type N-terminus I CPQ89_08770 PF04073 Aminoacyl-tRNA editing domain CPQ89_08770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPQ89_08770 PF03129 Anticodon binding domain CPQ89_08775 PF17820 PDZ domain CPQ89_08775 PF02163 Peptidase family M50 CPQ89_08785 PF01255 Putative undecaprenyl diphosphate synthase CPQ89_08790 PF01765 Ribosome recycling factor CPQ89_08795 PF00696 Amino acid kinase family CPQ89_08800 PF08239 Bacterial SH3 domain CPQ89_08800 PF01520 N-acetylmuramoyl-L-alanine amidase CPQ89_08805 PF01016 Ribosomal L27 protein CPQ89_08815 PF00829 Ribosomal prokaryotic L21 protein CPQ89_08830 PF13087 AAA domain CPQ89_08830 PF13091 PLD-like domain CPQ89_08840 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system CPQ89_08855 PF12008 Type I restriction and modification enzyme - subunit R C terminal CPQ89_08855 PF18766 SWI2/SNF2 ATPase CPQ89_08855 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CPQ89_08875 PF02384 N-6 DNA Methylase CPQ89_08875 PF12161 HsdM N-terminal domain CPQ89_08890 PF00589 Phage integrase family CPQ89_08890 PF02899 Phage integrase, N-terminal SAM-like domain CPQ89_08935 PF00210 Ferritin-like domain CPQ89_08945 PF07669 Eco57I restriction-modification methylase CPQ89_08950 PF04851 Type III restriction enzyme, res subunit CPQ89_08975 PF06100 MCRA family CPQ89_08980 PF01546 Peptidase family M20/M25/M40 CPQ89_08980 PF07687 Peptidase dimerisation domain CPQ89_08985 PF02082 Transcriptional regulator CPQ89_09035 PF00665 Integrase core domain CPQ89_09035 PF13333 Integrase core domain CPQ89_09035 PF13276 HTH-like domain CPQ89_09095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPQ89_09095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPQ89_09095 PF02824 TGS domain CPQ89_09095 PF03129 Anticodon binding domain CPQ89_09100 PF07319 Primosomal protein DnaI N-terminus CPQ89_09100 PF01695 IstB-like ATP binding protein CPQ89_09110 PF03477 ATP cone domain CPQ89_09115 PF01121 Dephospho-CoA kinase CPQ89_09120 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CPQ89_09120 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CPQ89_09120 PF06827 Zinc finger found in FPG and IleRS CPQ89_09125 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CPQ89_09125 PF00476 DNA polymerase family A CPQ89_09125 PF01367 5'-3' exonuclease, C-terminal SAM fold CPQ89_09130 PF01420 Type I restriction modification DNA specificity domain CPQ89_09145 PF00589 Phage integrase family CPQ89_09145 PF02899 Phage integrase, N-terminal SAM-like domain CPQ89_09155 PF01420 Type I restriction modification DNA specificity domain CPQ89_09160 PF02384 N-6 DNA Methylase CPQ89_09165 PF04851 Type III restriction enzyme, res subunit CPQ89_09165 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CPQ89_09165 PF00271 Helicase conserved C-terminal domain CPQ89_09165 PF08463 EcoEI R protein C-terminal CPQ89_09180 PF01027 Inhibitor of apoptosis-promoting Bax1 CPQ89_09190 PF03009 Glycerophosphoryl diester phosphodiesterase family CPQ89_09195 PF02875 Mur ligase family, glutamate ligase domain CPQ89_09195 PF01225 Mur ligase family, catalytic domain CPQ89_09195 PF08245 Mur ligase middle domain CPQ89_09215 PF17854 FtsK alpha domain CPQ89_09215 PF01580 FtsK/SpoIIIE family CPQ89_09215 PF09397 Ftsk gamma domain CPQ89_09220 PF14794 Domain of unknown function (DUF4479) CPQ89_09220 PF01588 Putative tRNA binding domain CPQ89_09225 PF00085 Thioredoxin CPQ89_09230 PF02390 Putative methyltransferase CPQ89_09235 PF01636 Phosphotransferase enzyme family CPQ89_09240 PF05975 Bacterial ABC transporter protein EcsB CPQ89_09245 PF00005 ABC transporter CPQ89_09255 PF01230 HIT domain CPQ89_09275 PF13411 MerR HTH family regulatory protein CPQ89_09280 PF01966 HD domain CPQ89_09285 PF06133 Control of competence regulator ComK, YlbF/YmcA CPQ89_09290 PF00912 Transglycosylase CPQ89_09290 PF00905 Penicillin binding protein transpeptidase domain CPQ89_09295 PF01316 Arginine repressor, DNA binding domain CPQ89_09295 PF02863 Arginine repressor, C-terminal domain CPQ89_09305 PF00750 tRNA synthetases class I (R) CPQ89_09305 PF05746 DALR anticodon binding domain CPQ89_09305 PF03485 Arginyl tRNA synthetase N terminal domain CPQ89_09320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPQ89_09320 PF03466 LysR substrate binding domain CPQ89_09325 PF02844 Phosphoribosylglycinamide synthetase, N domain CPQ89_09325 PF02843 Phosphoribosylglycinamide synthetase, C domain CPQ89_09325 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPQ89_09330 PF02142 MGS-like domain CPQ89_09330 PF01808 AICARFT/IMPCHase bienzyme CPQ89_09335 PF00551 Formyl transferase CPQ89_09340 PF00586 AIR synthase related protein, N-terminal domain CPQ89_09340 PF02769 AIR synthase related protein, C-terminal domain CPQ89_09345 PF00156 Phosphoribosyl transferase domain CPQ89_09345 PF13537 Glutamine amidotransferase domain CPQ89_09350 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CPQ89_09350 PF02769 AIR synthase related protein, C-terminal domain CPQ89_09350 PF00586 AIR synthase related protein, N-terminal domain CPQ89_09360 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CPQ89_09365 PF01259 SAICAR synthetase CPQ89_09370 PF10397 Adenylosuccinate lyase C-terminus CPQ89_09370 PF00206 Lyase CPQ89_09375 PF02222 ATP-grasp domain CPQ89_09375 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CPQ89_09380 PF00731 AIR carboxylase CPQ89_09385 PF02705 K+ potassium transporter CPQ89_09390 PF01712 Deoxynucleoside kinase CPQ89_09395 PF12072 Domain of unknown function (DUF3552) CPQ89_09395 PF01966 HD domain CPQ89_09395 PF00013 KH domain CPQ89_09400 PF00154 recA bacterial DNA recombination protein CPQ89_09405 PF01066 CDP-alcohol phosphatidyltransferase CPQ89_09410 PF13464 Domain of unknown function (DUF4115) CPQ89_09420 PF00675 Insulinase (Peptidase family M16) CPQ89_09420 PF05193 Peptidase M16 inactive domain CPQ89_09425 PF05193 Peptidase M16 inactive domain CPQ89_09430 PF09397 Ftsk gamma domain CPQ89_09430 PF17854 FtsK alpha domain CPQ89_09430 PF01580 FtsK/SpoIIIE family CPQ89_09450 PF00588 SpoU rRNA Methylase family CPQ89_09465 PF00478 IMP dehydrogenase / GMP reductase domain CPQ89_09475 PF10282 Lactonase, 7-bladed beta-propeller CPQ89_09480 PF03932 CutC family CPQ89_09490 PF01769 Divalent cation transporter CPQ89_09490 PF00571 CBS domain CPQ89_09490 PF03448 MgtE intracellular N domain CPQ89_09495 PF00849 RNA pseudouridylate synthase CPQ89_09500 PF01513 ATP-NAD kinase CPQ89_09505 PF04607 Region found in RelA / SpoT proteins CPQ89_09515 PF01432 Peptidase family M3 CPQ89_09515 PF08439 Oligopeptidase F CPQ89_09525 PF05389 Negative regulator of genetic competence (MecA) CPQ89_09530 PF03960 ArsC family CPQ89_09540 PF03477 ATP cone domain CPQ89_09540 PF13597 Anaerobic ribonucleoside-triphosphate reductase CPQ89_09545 PF04260 Protein of unknown function (DUF436) CPQ89_09550 PF01668 SmpB protein CPQ89_09555 PF00773 RNB domain CPQ89_09555 PF00575 S1 RNA binding domain CPQ89_09555 PF17876 Cold shock domain CPQ89_09555 PF08206 Ribonuclease B OB domain CPQ89_09560 PF03840 Preprotein translocase SecG subunit CPQ89_09565 PF00654 Voltage gated chloride channel CPQ89_09570 PF03952 Enolase, N-terminal domain CPQ89_09570 PF00113 Enolase, C-terminal TIM barrel domain CPQ89_09575 PF00121 Triosephosphate isomerase CPQ89_09580 PF00162 Phosphoglycerate kinase CPQ89_09585 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CPQ89_09585 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CPQ89_09590 PF04198 Putative sugar-binding domain CPQ89_09595 PF04552 Sigma-54, DNA binding domain CPQ89_09595 PF00309 Sigma-54 factor, Activator interacting domain (AID) CPQ89_09595 PF04963 Sigma-54 factor, core binding domain CPQ89_09615 PF05257 CHAP domain CPQ89_09615 PF01476 LysM domain CPQ89_09640 PF02368 Bacterial Ig-like domain (group 2) CPQ89_09640 PF00754 F5/8 type C domain CPQ89_09665 PF08239 Bacterial SH3 domain CPQ89_09665 PF01183 Glycosyl hydrolases family 25 CPQ89_09740 PF12323 Helix-turn-helix domain CPQ89_09740 PF01385 Probable transposase CPQ89_09740 PF07282 Putative transposase DNA-binding domain CPQ89_09755 PF01385 Probable transposase CPQ89_09755 PF07282 Putative transposase DNA-binding domain CPQ89_09755 PF12323 Helix-turn-helix domain CPQ89_09780 PF03837 RecT family CPQ89_09850 PF00574 Clp protease CPQ89_09860 PF14527 WhiA LAGLIDADG-like domain CPQ89_09860 PF02650 WhiA C-terminal HTH domain CPQ89_09860 PF10298 WhiA N-terminal LAGLIDADG-like domain CPQ89_09870 PF03668 P-loop ATPase protein family CPQ89_09875 PF03313 Serine dehydratase alpha chain CPQ89_09880 PF01842 ACT domain CPQ89_09880 PF03315 Serine dehydratase beta chain CPQ89_09885 PF02664 S-Ribosylhomocysteinase (LuxS) CPQ89_09890 PF00005 ABC transporter CPQ89_09890 PF17760 UvrA interaction domain CPQ89_09890 PF17755 UvrA DNA-binding domain CPQ89_09895 PF17757 UvrB interaction domain CPQ89_09895 PF12344 Ultra-violet resistance protein B CPQ89_09895 PF02151 UvrB/uvrC motif CPQ89_09895 PF04851 Type III restriction enzyme, res subunit CPQ89_09895 PF00271 Helicase conserved C-terminal domain CPQ89_09900 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPQ89_09900 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPQ89_09900 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPQ89_09900 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPQ89_09905 PF02899 Phage integrase, N-terminal SAM-like domain CPQ89_09905 PF00589 Phage integrase family CPQ89_09940 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPQ89_09945 PF01790 Prolipoprotein diacylglyceryl transferase CPQ89_09950 PF02603 HPr Serine kinase N terminus CPQ89_09950 PF07475 HPr Serine kinase C-terminal domain CPQ89_09955 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CPQ89_09965 PF00512 His Kinase A (phospho-acceptor) domain CPQ89_09965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPQ89_09965 PF16736 Single Cache-like CPQ89_09965 PF00989 PAS fold CPQ89_09970 PF00072 Response regulator receiver domain CPQ89_09970 PF00486 Transcriptional regulatory protein, C terminal CPQ89_09975 PF17820 PDZ domain CPQ89_09980 PF02687 FtsX-like permease family CPQ89_09980 PF18075 FtsX extracellular domain CPQ89_09985 PF00005 ABC transporter CPQ89_09995 PF07516 SecA Wing and Scaffold domain CPQ89_09995 PF07517 SecA DEAD-like domain CPQ89_09995 PF01043 SecA preprotein cross-linking domain CPQ89_10000 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CPQ89_10000 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CPQ89_10010 PF04851 Type III restriction enzyme, res subunit CPQ89_10010 PF00271 Helicase conserved C-terminal domain CPQ89_10015 PF09186 Domain of unknown function (DUF1949) CPQ89_10015 PF01205 Uncharacterized protein family UPF0029 CPQ89_10020 PF00953 Glycosyl transferase family 4 CPQ89_10025 PF13520 Amino acid permease CPQ89_10030 PF00118 TCP-1/cpn60 chaperonin family CPQ89_10035 PF00166 Chaperonin 10 Kd subunit CPQ89_10045 PF06971 Putative DNA-binding protein N-terminus CPQ89_10045 PF02629 CoA binding domain CPQ89_10050 PF00005 ABC transporter CPQ89_10050 PF12848 ABC transporter CPQ89_10050 PF16326 ABC transporter C-terminal domain CPQ89_10055 PF00814 Glycoprotease family CPQ89_10065 PF00814 Glycoprotease family CPQ89_10070 PF17763 Glutaminase/Asparaginase C-terminal domain CPQ89_10070 PF00710 Asparaginase, N-terminal CPQ89_10080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPQ89_10085 PF06156 Initiation control protein YabA CPQ89_10090 PF09115 DNA polymerase III, delta subunit, C terminal CPQ89_10095 PF06153 Cyclic-di-AMP receptor CPQ89_10100 PF02223 Thymidylate kinase CPQ89_10110 PF02132 RecR protein CPQ89_10110 PF13662 Toprim domain CPQ89_10115 PF02575 YbaB/EbfC DNA-binding family CPQ89_10120 PF12169 DNA polymerase III subunits gamma and tau domain III CPQ89_10130 PF14437 MafB19-like deaminase CPQ89_10135 PF05175 Methyltransferase small domain CPQ89_10155 PF08000 Bacterial PH domain CPQ89_10160 PF00665 Integrase core domain CPQ89_10160 PF13936 Helix-turn-helix domain CPQ89_10185 PF00271 Helicase conserved C-terminal domain CPQ89_10185 PF00270 DEAD/DEAH box helicase CPQ89_10190 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CPQ89_10200 PF00196 Bacterial regulatory proteins, luxR family CPQ89_10200 PF00072 Response regulator receiver domain CPQ89_10205 PF07730 Histidine kinase CPQ89_10205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPQ89_10205 PF05231 MASE1 CPQ89_10215 PF00005 ABC transporter CPQ89_10230 PF01223 DNA/RNA non-specific endonuclease CPQ89_10235 PF03590 Aspartate-ammonia ligase CPQ89_10250 PF08818 Domain of unknown function (DU1801) CPQ89_10265 PF03358 NADPH-dependent FMN reductase CPQ89_10265 PF04205 FMN-binding domain CPQ89_10265 PF00890 FAD binding domain CPQ89_10270 PF00890 FAD binding domain CPQ89_10270 PF03358 NADPH-dependent FMN reductase CPQ89_10270 PF04205 FMN-binding domain CPQ89_10280 PF07672 Mycoplasma MFS transporter CPQ89_10285 PF01661 Macro domain CPQ89_10295 PF00893 Small Multidrug Resistance protein CPQ89_10310 PF01381 Helix-turn-helix CPQ89_10365 PF07690 Major Facilitator Superfamily CPQ89_10370 PF01641 SelR domain CPQ89_10375 PF01032 FecCD transport family CPQ89_10380 PF01032 FecCD transport family CPQ89_10390 PF00005 ABC transporter CPQ89_10405 PF01938 TRAM domain CPQ89_10405 PF05958 tRNA (Uracil-5-)-methyltransferase CPQ89_10415 PF12002 MgsA AAA+ ATPase C terminal CPQ89_10415 PF16193 AAA C-terminal domain CPQ89_10415 PF00004 ATPase family associated with various cellular activities (AAA) CPQ89_10420 PF00781 Diacylglycerol kinase catalytic domain CPQ89_10425 PF02934 GatB/GatE catalytic domain CPQ89_10425 PF02637 GatB domain CPQ89_10430 PF01425 Amidase CPQ89_10435 PF02686 Glu-tRNAGln amidotransferase C subunit CPQ89_10445 PF01653 NAD-dependent DNA ligase adenylation domain CPQ89_10445 PF00533 BRCA1 C Terminus (BRCT) domain CPQ89_10445 PF12826 Helix-hairpin-helix motif CPQ89_10445 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CPQ89_10445 PF03120 NAD-dependent DNA ligase OB-fold domain CPQ89_10450 PF00580 UvrD/REP helicase N-terminal domain CPQ89_10450 PF13361 UvrD-like helicase C-terminal domain CPQ89_10455 PF02222 ATP-grasp domain CPQ89_10455 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CPQ89_10460 PF00860 Permease family CPQ89_10470 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CPQ89_10470 PF13457 GW (Gly-Tryp) dipeptide domain CPQ89_10475 PF12822 ECF transporter, substrate-specific component CPQ89_10485 PF03949 Malic enzyme, NAD binding domain CPQ89_10485 PF00390 Malic enzyme, N-terminal domain CPQ89_10490 PF03466 LysR substrate binding domain CPQ89_10490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPQ89_10500 PF02687 FtsX-like permease family CPQ89_10500 PF00005 ABC transporter CPQ89_10500 PF12704 MacB-like periplasmic core domain CPQ89_10505 PF04226 Transglycosylase associated protein CPQ89_10515 PF03780 Asp23 family, cell envelope-related function CPQ89_10535 PF01381 Helix-turn-helix CPQ89_10540 PF13333 Integrase core domain CPQ89_10540 PF00665 Integrase core domain CPQ89_10540 PF13276 HTH-like domain CPQ89_10555 PF01197 Ribosomal protein L31 CPQ89_10560 PF04650 YSIRK type signal peptide CPQ89_10560 PF00746 LPXTG cell wall anchor motif CPQ89_10560 PF17480 AlphaC C-terminal CPQ89_10560 PF08829 Alpha C protein N terminal CPQ89_10565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPQ89_10565 PF07498 Rho termination factor, N-terminal domain CPQ89_10565 PF07497 Rho termination factor, RNA-binding domain CPQ89_10570 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPQ89_10575 PF06418 CTP synthase N-terminus CPQ89_10575 PF00117 Glutamine amidotransferase class-I CPQ89_10580 PF05066 HB1, ASXL, restriction endonuclease HTH domain CPQ89_10590 PF01966 HD domain CPQ89_10600 PF00899 ThiF family CPQ89_10630 PF03099 Biotin/lipoate A/B protein ligase family CPQ89_10630 PF08279 HTH domain CPQ89_10630 PF02237 Biotin protein ligase C terminal domain CPQ89_10635 PF01451 Low molecular weight phosphotyrosine protein phosphatase CPQ89_10640 PF12848 ABC transporter CPQ89_10640 PF00005 ABC transporter CPQ89_10655 PF14572 Phosphoribosyl synthetase-associated domain CPQ89_10655 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CPQ89_10660 PF00483 Nucleotidyl transferase CPQ89_10660 PF00132 Bacterial transferase hexapeptide (six repeats) CPQ89_10665 PF09182 Bacterial purine repressor, N-terminal CPQ89_10665 PF00156 Phosphoribosyl transferase domain CPQ89_10670 PF00764 Arginosuccinate synthase CPQ89_10675 PF14698 Argininosuccinate lyase C-terminal CPQ89_10675 PF00206 Lyase CPQ89_10685 PF00288 GHMP kinases N terminal domain CPQ89_10685 PF08544 GHMP kinases C terminal CPQ89_10695 PF10437 Bacterial lipoate protein ligase C-terminus CPQ89_10695 PF03099 Biotin/lipoate A/B protein ligase family CPQ89_10700 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPQ89_10700 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPQ89_10705 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPQ89_10705 PF00364 Biotin-requiring enzyme CPQ89_10705 PF02817 e3 binding domain CPQ89_10710 PF02780 Transketolase, C-terminal domain CPQ89_10710 PF02779 Transketolase, pyrimidine binding domain CPQ89_10715 PF00676 Dehydrogenase E1 component CPQ89_10720 PF07690 Major Facilitator Superfamily CPQ89_10725 PF06257 Biofilm formation stimulator VEG CPQ89_10730 PF00398 Ribosomal RNA adenine dimethylase CPQ89_10735 PF13331 Domain of unknown function (DUF4093) CPQ89_10735 PF01751 Toprim domain CPQ89_10740 PF01026 TatD related DNase CPQ89_10745 PF01588 Putative tRNA binding domain CPQ89_10745 PF09334 tRNA synthetases class I (M) CPQ89_10745 PF08264 Anticodon-binding domain of tRNA CPQ89_10750 PF04608 Phosphatidylglycerophosphatase A CPQ89_10760 PF00368 Hydroxymethylglutaryl-coenzyme A reductase CPQ89_10765 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region CPQ89_10765 PF04650 YSIRK type signal peptide CPQ89_10765 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region CPQ89_10765 PF07501 G5 domain CPQ89_10775 PF02541 Ppx/GppA phosphatase family CPQ89_10780 PF00579 tRNA synthetases class I (W and Y) CPQ89_10785 PF00128 Alpha amylase, catalytic domain CPQ89_10790 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_10795 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_10800 PF01547 Bacterial extracellular solute-binding protein CPQ89_10805 PF02311 AraC-like ligand binding domain CPQ89_10805 PF12833 Helix-turn-helix domain CPQ89_10810 PF00128 Alpha amylase, catalytic domain CPQ89_10810 PF16657 Maltogenic Amylase, C-terminal domain CPQ89_10815 PF17912 MalK OB fold domain CPQ89_10815 PF03459 TOBE domain CPQ89_10815 PF00005 ABC transporter CPQ89_10820 PF13556 PucR C-terminal helix-turn-helix domain CPQ89_10830 PF01625 Peptide methionine sulfoxide reductase CPQ89_10835 PF07690 Major Facilitator Superfamily CPQ89_10835 PF07690 Major Facilitator Superfamily CPQ89_10840 PF00005 ABC transporter CPQ89_10840 PF02687 FtsX-like permease family CPQ89_10840 PF12704 MacB-like periplasmic core domain CPQ89_10845 PF00005 ABC transporter CPQ89_10845 PF02687 FtsX-like permease family CPQ89_10845 PF12704 MacB-like periplasmic core domain CPQ89_10855 PF13538 UvrD-like helicase C-terminal domain CPQ89_10920 PF00579 tRNA synthetases class I (W and Y) CPQ89_10920 PF01479 S4 domain CPQ89_10925 PF01475 Ferric uptake regulator family CPQ89_10930 PF04307 LexA-binding, inner membrane-associated putative hydrolase CPQ89_10935 PF13476 AAA domain CPQ89_10940 PF00149 Calcineurin-like phosphoesterase CPQ89_10940 PF12320 Type 5 capsule protein repressor C-terminal domain CPQ89_10945 PF12464 Maltose acetyltransferase CPQ89_10945 PF14602 Hexapeptide repeat of succinyl-transferase CPQ89_10960 PF01168 Alanine racemase, N-terminal domain CPQ89_10960 PF00842 Alanine racemase, C-terminal domain CPQ89_10965 PF01648 4'-phosphopantetheinyl transferase superfamily CPQ89_10970 PF02589 LUD domain CPQ89_10975 PF02589 LUD domain CPQ89_10975 PF13183 4Fe-4S dicluster domain CPQ89_10975 PF11870 Domain of unknown function (DUF3390) CPQ89_10980 PF02754 Cysteine-rich domain CPQ89_10985 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPQ89_10995 PF00348 Polyprenyl synthetase CPQ89_11000 PF00005 ABC transporter CPQ89_11000 PF00664 ABC transporter transmembrane region CPQ89_11005 PF00664 ABC transporter transmembrane region CPQ89_11005 PF00005 ABC transporter CPQ89_11010 PF02322 Cytochrome bd terminal oxidase subunit II CPQ89_11015 PF01654 Cytochrome bd terminal oxidase subunit I CPQ89_11020 PF17480 AlphaC C-terminal CPQ89_11020 PF08829 Alpha C protein N terminal CPQ89_11020 PF00746 LPXTG cell wall anchor motif CPQ89_11020 PF04650 YSIRK type signal peptide CPQ89_11040 PF00271 Helicase conserved C-terminal domain CPQ89_11040 PF00270 DEAD/DEAH box helicase CPQ89_11045 PF01225 Mur ligase family, catalytic domain CPQ89_11045 PF02875 Mur ligase family, glutamate ligase domain CPQ89_11045 PF08245 Mur ligase middle domain CPQ89_11050 PF01435 Peptidase family M48 CPQ89_11055 PF04011 LemA family CPQ89_11060 PF13673 Acetyltransferase (GNAT) domain CPQ89_11065 PF00005 ABC transporter CPQ89_11065 PF00571 CBS domain CPQ89_11070 PF00528 Binding-protein-dependent transport system inner membrane component CPQ89_11075 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CPQ89_11080 PF00664 ABC transporter transmembrane region CPQ89_11080 PF00005 ABC transporter CPQ89_11085 PF00664 ABC transporter transmembrane region CPQ89_11085 PF00005 ABC transporter CPQ89_11105 PF00890 FAD binding domain CPQ89_11105 PF14537 Cytochrome c3 CPQ89_11125 PF03965 Penicillinase repressor CPQ89_11130 PF02673 Bacitracin resistance protein BacA CPQ89_11135 PF09335 SNARE associated Golgi protein CPQ89_11155 PF01131 DNA topoisomerase CPQ89_11155 PF01751 Toprim domain