locus-tag	class	description
CPQ89_00005	COG0626	cystathionine gamma-synthase activity
CPQ89_00010	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CPQ89_00075	COG2801	Transposase and inactivated derivatives
CPQ89_00085	COG0531	amino acid
CPQ89_00090	COG1902	pentaerythritol trinitrate reductase activity
CPQ89_00120	COG2814	Major facilitator Superfamily
CPQ89_00135	COG2040	homocysteine
CPQ89_00145	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CPQ89_00150	COG2723	6-phospho-beta-galactosidase activity
CPQ89_00155	COG2188	Transcriptional regulator
CPQ89_00175	COG2274	protein secretion by the type I secretion system
CPQ89_00240	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CPQ89_00280	COG0446	pyridine nucleotide-disulphide oxidoreductase
CPQ89_00290	COG2826	transposase and inactivated derivatives, IS30 family
CPQ89_00325	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CPQ89_00405	COG1335	isochorismatase
CPQ89_00465	COG1011	Hydrolase
CPQ89_00490	COG2755	lipolytic protein G-D-S-L family
CPQ89_00490	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CPQ89_00515	COG0488	(ABC) transporter
CPQ89_00520	COG0542	response to heat
CPQ89_00525	COG4463	regulation of RNA biosynthetic process
CPQ89_00550	COG3279	Response regulator of the LytR AlgR family
CPQ89_00560	COG1131	(ABC) transporter
CPQ89_00595	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CPQ89_00610	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CPQ89_00615	COG2213	PTS system mannitol-specific
CPQ89_00670	COG1063	alcohol dehydrogenase
CPQ89_00705	COG1733	regulation of RNA biosynthetic process
CPQ89_00745	COG2003	Belongs to the UPF0758 family
CPQ89_00770	COG0588	phosphoglycerate mutase activity
CPQ89_00775	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CPQ89_00780	COG0628	permease
CPQ89_00785	COG2017	converts alpha-aldose to the beta-anomer
CPQ89_00795	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CPQ89_00800	COG2188	Transcriptional regulator
CPQ89_00810	COG1122	ATPase activity
CPQ89_00820	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CPQ89_00825	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
CPQ89_00830	COG0406	alpha-ribazole phosphatase activity
CPQ89_00840	COG2217	Heavy metal translocating P-type atpase
CPQ89_00855	COG1116	anion transmembrane transporter activity
CPQ89_00865	COG2244	polysaccharide biosynthetic process
CPQ89_00905	COG3853	Toxic anion resistance protein (TelA)
CPQ89_00915	COG3693	PFAM glycoside hydrolase, family 10
CPQ89_00915	COG3507	Belongs to the glycosyl hydrolase 43 family
CPQ89_00915	COG2382	esterase
CPQ89_00925	COG1309	transcriptional regulator
CPQ89_00930	COG2376	Dihydroxyacetone kinase
CPQ89_00935	COG2376	Dihydroxyacetone kinase
CPQ89_01015	COG0270	DNA (cytosine-5-)-methyltransferase activity
CPQ89_01040	COG1070	Carbohydrate kinase
CPQ89_01055	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CPQ89_01075	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
CPQ89_01080	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CPQ89_01080	COG2190	(PTS) system
CPQ89_01080	COG1263	PTS System
CPQ89_01085	COG1263	PTS System
CPQ89_01085	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CPQ89_01085	COG2190	(PTS) system
CPQ89_01095	COG3177	Filamentation induced by cAMP protein fic
CPQ89_01115	COG0446	pyridine nucleotide-disulphide oxidoreductase
CPQ89_01120	COG1959	2 iron, 2 sulfur cluster binding
CPQ89_01130	COG0596	Alpha beta hydrolase
CPQ89_01155	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CPQ89_01155	COG1522	sequence-specific DNA binding
CPQ89_01160	COG1957	nucleoside hydrolase
CPQ89_01165	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CPQ89_01175	COG0135	phosphoribosylanthranilate isomerase activity
CPQ89_01180	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CPQ89_01205	COG3850	Histidine kinase
CPQ89_01205	COG5002	protein histidine kinase activity
CPQ89_01240	COG0477	Major facilitator Superfamily
CPQ89_01255	COG4974	Belongs to the 'phage' integrase family
CPQ89_01275	COG0732	type I restriction modification DNA specificity domain
CPQ89_01285	COG0110	maltose O-acetyltransferase activity
CPQ89_01350	COG3973	AAA domain
CPQ89_01355	COG0475	glutathione-regulated potassium exporter activity
CPQ89_01355	COG0569	domain protein
CPQ89_01385	COG1122	ATPase activity
CPQ89_01390	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CPQ89_01410	COG3623	hexulose-6-phosphate isomerase
CPQ89_01425	COG3037	sugar-specific permease SgaT UlaA
CPQ89_01430	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CPQ89_01490	COG0012	GTP binding
CPQ89_01495	COG4481	Protein conserved in bacteria
CPQ89_01500	COG1475	DNA binding
CPQ89_01505	COG1192	Involved in chromosome partitioning
CPQ89_01525	COG1418	mRNA catabolic process
CPQ89_01555	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CPQ89_01570	COG1131	(ABC) transporter
CPQ89_01585	COG1418	mRNA catabolic process
CPQ89_01600	COG1573	uracil-dna glycosylase
CPQ89_01605	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CPQ89_01615	COG0366	Alpha amylase catalytic
CPQ89_01625	COG0366	Alpha amylase catalytic
CPQ89_01630	COG0366	Alpha amylase catalytic
CPQ89_01635	COG1609	Transcriptional regulator
CPQ89_01640	COG2182	Extracellular solute-binding protein
CPQ89_01645	COG1175	transmembrane transport
CPQ89_01650	COG3833	ABC-type maltose transport systems, permease component
CPQ89_01675	COG1263	PTS System
CPQ89_01675	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CPQ89_01675	COG2190	(PTS) system
CPQ89_01695	COG0515	serine threonine protein kinase
CPQ89_01700	COG2274	protein secretion by the type I secretion system
CPQ89_01710	COG1263	PTS System
CPQ89_01710	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CPQ89_01710	COG2190	(PTS) system
CPQ89_01720	COG3479	Phenolic acid decarboxylase
CPQ89_01750	COG3716	PTS system mannose fructose sorbose family IID component
CPQ89_01755	COG3715	PTS system
CPQ89_01765	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CPQ89_01765	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CPQ89_01775	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CPQ89_01775	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CPQ89_01800	COG4975	Glucose uptake
CPQ89_01805	COG1869	D-ribose catabolic process
CPQ89_01815	COG1609	Transcriptional regulator
CPQ89_01820	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CPQ89_01825	COG1177	transmembrane transport
CPQ89_01830	COG1176	ABC-type spermidine putrescine transport system, permease component I
CPQ89_01835	COG3842	ATPase activity
CPQ89_01850	COG0450	alkyl hydroperoxide reductase
CPQ89_01860	COG0693	protein deglycase activity
CPQ89_01865	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CPQ89_01870	COG1279	arginine transmembrane transporter activity
CPQ89_01875	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CPQ89_01885	COG1609	Transcriptional regulator
CPQ89_01895	COG2217	Heavy metal translocating P-type atpase
CPQ89_01900	COG1114	Component of the transport system for branched-chain amino acids
CPQ89_01905	COG1174	glycine betaine transport
CPQ89_01910	COG0517	IMP dehydrogenase activity
CPQ89_01910	COG1125	glycine betaine transport
CPQ89_01915	COG1132	(ABC) transporter
CPQ89_01920	COG1132	(ABC) transporter
CPQ89_01925	COG0640	Transcriptional regulator
CPQ89_01935	COG2323	membrane
CPQ89_01970	COG1695	Transcriptional regulator
CPQ89_01990	COG0346	lactoylglutathione lyase activity
CPQ89_01995	COG0789	Transcriptional regulator
CPQ89_02000	COG2814	Major facilitator Superfamily
CPQ89_02035	COG0675	Transposase, IS605 OrfB family
CPQ89_02050	COG1486	melibiose metabolic process
CPQ89_02055	COG1263	PTS System
CPQ89_02055	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CPQ89_02060	COG1846	Transcriptional regulator
CPQ89_02065	COG1847	R3H domain protein
CPQ89_02070	COG0656	L-ascorbic acid biosynthetic process
CPQ89_02075	COG3590	peptidase
CPQ89_02100	COG1811	Na channel or pump
CPQ89_02110	COG3022	response to hydroperoxide
CPQ89_02125	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CPQ89_02130	COG0601	transmembrane transport
CPQ89_02135	COG4608	Belongs to the ABC transporter superfamily
CPQ89_02145	COG1114	Component of the transport system for branched-chain amino acids
CPQ89_02150	COG0833	amino acid
CPQ89_02155	COG2707	UPF0756 membrane protein
CPQ89_02175	COG2723	6-phospho-beta-galactosidase activity
CPQ89_02180	COG0588	phosphoglycerate mutase activity
CPQ89_02225	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CPQ89_02230	COG2274	protein secretion by the type I secretion system
CPQ89_02325	COG2723	6-phospho-beta-galactosidase activity
CPQ89_02330	COG1263	PTS System
CPQ89_02330	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CPQ89_02330	COG2190	(PTS) system
CPQ89_02335	COG2188	Transcriptional regulator
CPQ89_02365	COG4555	ABC transporter
CPQ89_02430	COG1073	alpha beta
CPQ89_02450	COG1053	succinate dehydrogenase
CPQ89_02450	COG3976	FMN-binding domain protein
CPQ89_02450	COG0431	NADPH-dependent FMN reductase
CPQ89_02460	COG0706	membrane insertase activity
CPQ89_02475	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CPQ89_02480	COG0592	DNA-directed DNA polymerase activity
CPQ89_02485	COG2501	S4 domain
CPQ89_02495	COG0187	DNA topoisomerase II activity
CPQ89_02510	COG0360	Binds together with S18 to 16S ribosomal RNA
CPQ89_02515	COG0629	single-stranded DNA binding
CPQ89_02520	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CPQ89_02550	COG2826	transposase and inactivated derivatives, IS30 family
CPQ89_02570	COG2274	protein secretion by the type I secretion system
CPQ89_02615	COG0359	binds to the 23S rRNA
CPQ89_02620	COG0583	DNA-binding transcription factor activity
CPQ89_02625	COG0697	spore germination
CPQ89_02645	COG0305	Participates in initiation and elongation during chromosome replication
CPQ89_02650	COG0367	asparagine synthase
CPQ89_02675	COG0675	Transposase, IS605 OrfB family
CPQ89_02680	COG0527	aspartate kinase activity
CPQ89_02690	COG0460	homoserine dehydrogenase
CPQ89_02695	COG0083	homoserine kinase activity
CPQ89_02730	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CPQ89_02750	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CPQ89_02755	COG0583	DNA-binding transcription factor activity
CPQ89_02785	COG0433	COG0433 Predicted ATPase
CPQ89_02800	COG0738	Major facilitator superfamily
CPQ89_02810	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CPQ89_02815	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CPQ89_02820	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CPQ89_02825	COG2252	PERMEase
CPQ89_02845	COG1882	Formate acetyltransferase
CPQ89_02850	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CPQ89_02865	COG1122	ATPase activity
CPQ89_02880	COG1607	acyl-coa hydrolase
CPQ89_02885	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CPQ89_02895	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CPQ89_02900	COG3759	membrane
CPQ89_02930	COG0745	RESPONSE REGULATOR receiver
CPQ89_02935	COG5002	protein histidine kinase activity
CPQ89_02950	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CPQ89_02955	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CPQ89_02975	COG0675	Transposase, IS605 OrfB family
CPQ89_03010	COG1428	Deoxynucleoside kinase
CPQ89_03030	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CPQ89_03035	COG0765	amino acid transport
CPQ89_03045	COG1940	carbohydrate kinase activity
CPQ89_03050	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CPQ89_03080	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CPQ89_03150	COG2814	Major facilitator Superfamily
CPQ89_03165	COG1349	DNA-binding transcription factor activity
CPQ89_03170	COG1105	Belongs to the carbohydrate kinase PfkB family
CPQ89_03175	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CPQ89_03175	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CPQ89_03175	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CPQ89_03185	COG1113	amino acid transport
CPQ89_03225	COG0562	UDP-galactopyranose mutase
CPQ89_03235	COG0438	transferase activity, transferring glycosyl groups
CPQ89_03250	COG0438	transferase activity, transferring glycosyl groups
CPQ89_03265	COG1215	transferase activity, transferring glycosyl groups
CPQ89_03270	COG0463	Glycosyl transferase, family 2
CPQ89_03290	COG1307	EDD domain protein, DegV family
CPQ89_03305	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CPQ89_03320	COG1091	dTDP-4-dehydrorhamnose reductase activity
CPQ89_03345	COG0463	Glycosyl transferase, family 2
CPQ89_03355	COG0489	protein tyrosine kinase activity
CPQ89_03360	COG4464	protein tyrosine phosphatase activity
CPQ89_03365	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CPQ89_03395	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CPQ89_03400	COG1126	abc transporter atp-binding protein
CPQ89_03405	COG0765	amino acid transport
CPQ89_03415	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CPQ89_03420	COG1757	Na H antiporter
CPQ89_03425	COG0861	Integral membrane protein TerC family
CPQ89_03435	COG3118	belongs to the thioredoxin family
CPQ89_03445	COG1028	Short-chain dehydrogenase reductase Sdr
CPQ89_03470	COG1136	(ABC) transporter
CPQ89_03470	COG0577	efflux transmembrane transporter activity
CPQ89_03490	COG0640	Transcriptional regulator
CPQ89_03495	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CPQ89_03500	COG1131	(ABC) transporter
CPQ89_03515	COG0534	Mate efflux family protein
CPQ89_03525	COG1122	ATPase activity
CPQ89_03535	COG0310	cobalt ion transport
CPQ89_03540	COG0004	ammonium transporteR
CPQ89_03560	COG0804	urea catabolic process
CPQ89_03570	COG0830	nickel cation binding
CPQ89_03575	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CPQ89_03585	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CPQ89_03590	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CPQ89_03600	COG0675	Transposase, IS605 OrfB family
CPQ89_03605	COG2188	Transcriptional regulator
CPQ89_03635	COG0675	Transposase, IS605 OrfB family
CPQ89_03640	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
CPQ89_03650	COG4166	transmembrane transport
CPQ89_03660	COG0531	amino acid
CPQ89_03665	COG0194	GDP metabolic process
CPQ89_03670	COG0735	belongs to the Fur family
CPQ89_03690	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CPQ89_03695	COG0475	glutathione-regulated potassium exporter activity
CPQ89_03710	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CPQ89_03715	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
CPQ89_03720	COG1737	Transcriptional regulator
CPQ89_03725	COG0531	amino acid
CPQ89_03730	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CPQ89_03740	COG4166	transmembrane transport
CPQ89_03745	COG0601	transmembrane transport
CPQ89_03750	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CPQ89_03755	COG0444	Belongs to the ABC transporter superfamily
CPQ89_03760	COG4608	Belongs to the ABC transporter superfamily
CPQ89_03765	COG2252	PERMEase
CPQ89_03770	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CPQ89_03815	COG1511	domain protein
CPQ89_03830	COG4152	abc transporter atp-binding protein
CPQ89_03845	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CPQ89_03870	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CPQ89_03875	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CPQ89_03880	COG1447	Phosphotransferase system cellobiose-specific component IIA
CPQ89_03885	COG1940	carbohydrate kinase activity
CPQ89_03890	COG2723	6-phospho-beta-galactosidase activity
CPQ89_03895	COG0531	amino acid
CPQ89_03910	COG0564	pseudouridine synthase activity
CPQ89_03920	COG1278	Cold shock
CPQ89_03925	COG2814	Major facilitator Superfamily
CPQ89_03930	COG1316	TRANSCRIPTIONal
CPQ89_03940	COG0730	response to heat
CPQ89_03955	COG1959	2 iron, 2 sulfur cluster binding
CPQ89_03960	COG0028	Belongs to the TPP enzyme family
CPQ89_03965	COG3527	Alpha-acetolactate decarboxylase
CPQ89_03970	COG0833	amino acid
CPQ89_03980	COG0588	phosphoglycerate mutase activity
CPQ89_04060	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CPQ89_04065	COG1064	alcohol dehydrogenase
CPQ89_04070	COG2918	glutathione biosynthetic process
CPQ89_04070	COG0189	ligase activity
CPQ89_04080	COG3118	belongs to the thioredoxin family
CPQ89_04085	COG0492	ferredoxin-NADP+ reductase activity
CPQ89_04100	COG2271	Major facilitator Superfamily
CPQ89_04110	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
CPQ89_04120	COG0366	Alpha amylase catalytic
CPQ89_04125	COG2188	Transcriptional regulator
CPQ89_04130	COG1263	PTS System
CPQ89_04130	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CPQ89_04130	COG2190	(PTS) system
CPQ89_04140	COG1609	Transcriptional regulator
CPQ89_04165	COG0456	acetyltransferase
CPQ89_04170	COG1846	Transcriptional regulator
CPQ89_04175	COG0561	phosphatase activity
CPQ89_04185	COG2217	Heavy metal translocating P-type atpase
CPQ89_04200	COG1454	alcohol dehydrogenase
CPQ89_04200	COG1012	belongs to the aldehyde dehydrogenase family
CPQ89_04210	COG3684	Belongs to the aldolase LacD family
CPQ89_04230	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CPQ89_04230	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CPQ89_04235	COG3715	PTS system
CPQ89_04240	COG3716	PTS system mannose fructose sorbose family IID component
CPQ89_04250	COG2222	sugar isomerase
CPQ89_04255	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CPQ89_04260	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CPQ89_04275	COG2723	6-phospho-beta-galactosidase activity
CPQ89_04280	COG2190	(PTS) system
CPQ89_04280	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CPQ89_04280	COG1263	PTS System
CPQ89_04285	COG3711	transcriptional antiterminator
CPQ89_04295	COG0105	UTP biosynthetic process
CPQ89_04300	COG4166	transmembrane transport
CPQ89_04305	COG2966	Psort location CytoplasmicMembrane, score
CPQ89_04335	COG1801	Protein of unknown function DUF72
CPQ89_04340	COG0242	peptide deformylase activity
CPQ89_04380	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CPQ89_04385	COG2244	polysaccharide biosynthetic process
CPQ89_04390	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CPQ89_04400	COG1098	S1 RNA binding domain
CPQ89_04405	COG0037	tRNA processing
CPQ89_04410	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CPQ89_04420	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CPQ89_04425	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CPQ89_04430	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CPQ89_04470	COG3104	oligopeptide transport
CPQ89_04485	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CPQ89_04490	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CPQ89_04495	COG2188	Transcriptional regulator
CPQ89_04505	COG1957	nucleoside hydrolase
CPQ89_04515	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CPQ89_04525	COG0514	ATP-dependent DNA helicase (RecQ)
CPQ89_04530	COG2183	response to ionizing radiation
CPQ89_04535	COG3091	SprT-like family
CPQ89_04545	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CPQ89_04550	COG3942	CHAP domain
CPQ89_04555	COG1316	TRANSCRIPTIONal
CPQ89_04565	COG0588	phosphoglycerate mutase activity
CPQ89_04585	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
CPQ89_04595	COG0756	dUTP diphosphatase activity
CPQ89_04605	COG4956	integral membrane protein (PIN domain superfamily)
CPQ89_04620	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
CPQ89_04625	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CPQ89_04655	COG3764	Sortase (surface protein transpeptidase)
CPQ89_04670	COG0250	Participates in transcription elongation, termination and antitermination
CPQ89_04710	COG0435	Glutathione S-transferase
CPQ89_04715	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
CPQ89_04715	COG0392	lysyltransferase activity
CPQ89_04720	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CPQ89_04725	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CPQ89_04730	COG1780	Probably involved in ribonucleotide reductase function
CPQ89_04735	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CPQ89_04745	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CPQ89_04770	COG0488	(ABC) transporter
CPQ89_04775	COG1376	ErfK ybiS ycfS ynhG family protein
CPQ89_04780	COG1376	ErfK ybiS ycfS ynhG family protein
CPQ89_04800	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CPQ89_04805	COG2011	ABC-type metal ion transport system permease component
CPQ89_04810	COG1464	Belongs to the NlpA lipoprotein family
CPQ89_04815	COG1253	flavin adenine dinucleotide binding
CPQ89_04825	COG1061	Type III restriction enzyme res subunit
CPQ89_04830	COG0517	IMP dehydrogenase activity
CPQ89_04830	COG0516	GMP reductase activity
CPQ89_04850	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CPQ89_04865	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CPQ89_04875	COG0398	Pfam SNARE associated Golgi protein
CPQ89_04895	COG2309	aminopeptidase activity
CPQ89_04900	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CPQ89_04910	COG0716	FMN binding
CPQ89_04915	COG0024	Methionine aminopeptidase
CPQ89_04920	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CPQ89_04925	COG3942	CHAP domain
CPQ89_04925	COG1388	LysM domain
CPQ89_04930	COG1295	ribonuclease BN
CPQ89_04935	COG2137	regulation of response to DNA damage stimulus
CPQ89_04940	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CPQ89_04950	COG0628	permease
CPQ89_04970	COG2246	polysaccharide biosynthetic process
CPQ89_04980	COG1253	flavin adenine dinucleotide binding
CPQ89_05000	COG0542	response to heat
CPQ89_05010	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CPQ89_05015	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CPQ89_05020	COG0438	transferase activity, transferring glycosyl groups
CPQ89_05025	COG0438	transferase activity, transferring glycosyl groups
CPQ89_05045	COG1368	sulfuric ester hydrolase activity
CPQ89_05130	COG2855	membrane
CPQ89_05135	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CPQ89_05135	COG1918	ferrous iron import across plasma membrane
CPQ89_05160	COG0561	phosphatase activity
CPQ89_05165	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CPQ89_05170	COG0280	phosphate acetyltransferase
CPQ89_05175	COG0802	atpase or kinase
CPQ89_05180	COG2176	DNA-directed DNA polymerase activity
CPQ89_05185	COG0708	Exodeoxyribonuclease III
CPQ89_05190	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CPQ89_05205	COG4856	YbbR-like protein
CPQ89_05240	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CPQ89_05250	COG0058	SHG alpha-glucan phosphorylase activity
CPQ89_05265	COG0573	inorganic phosphate transmembrane transporter activity
CPQ89_05270	COG0581	inorganic phosphate transmembrane transporter activity
CPQ89_05285	COG0704	Plays a role in the regulation of phosphate uptake
CPQ89_05290	COG0191	fructose-bisphosphate aldolase activity
CPQ89_05300	COG1272	protein, Hemolysin III
CPQ89_05305	COG0640	Transcriptional regulator
CPQ89_05350	COG4886	Leucine-rich repeat (LRR) protein
CPQ89_05350	COG4932	domain protein
CPQ89_05355	COG1122	ATPase activity
CPQ89_05360	COG4120	Belongs to the binding-protein-dependent transport system permease family
CPQ89_05380	COG1368	sulfuric ester hydrolase activity
CPQ89_05385	COG4975	Glucose uptake
CPQ89_05400	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CPQ89_05410	COG0668	transmembrane transport
CPQ89_05425	COG0006	proline dipeptidase activity
CPQ89_05430	COG1609	Transcriptional regulator
CPQ89_05450	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CPQ89_05455	COG1459	type II secretion system
CPQ89_05460	COG4537	Required for transformation and DNA binding
CPQ89_05485	COG0827	DNA restriction-modification system
CPQ89_05490	COG1113	amino acid transport
CPQ89_05495	COG4470	Protein conserved in bacteria
CPQ89_05500	COG0647	UMP catabolic process
CPQ89_05510	COG0586	Pfam SNARE associated Golgi protein
CPQ89_05525	COG1098	S1 RNA binding domain
CPQ89_05660	COG1705	Flagellar rod assembly protein muramidase FlgJ
CPQ89_05660	COG1388	LysM domain
CPQ89_05670	COG1113	amino acid transport
CPQ89_05675	COG2244	polysaccharide biosynthetic process
CPQ89_05680	COG1187	pseudouridine synthase activity
CPQ89_05685	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CPQ89_05690	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CPQ89_05725	COG0531	amino acid
CPQ89_05740	COG0589	response to stress
CPQ89_05770	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CPQ89_05775	COG0343	queuine tRNA-ribosyltransferase activity
CPQ89_05780	COG1862	Preprotein translocase
CPQ89_05790	COG3250	beta-galactosidase activity
CPQ89_05805	COG1609	Transcriptional regulator
CPQ89_05835	COG1846	Transcriptional regulator
CPQ89_05855	COG0439	Biotin carboxylase
CPQ89_05875	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CPQ89_05880	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CPQ89_05885	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CPQ89_05890	COG0513	Belongs to the DEAD box helicase family
CPQ89_05910	COG2378	regulation of single-species biofilm formation
CPQ89_05975	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CPQ89_06000	COG3118	belongs to the thioredoxin family
CPQ89_06005	COG1719	4-vinyl reductase, 4VR
CPQ89_06010	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CPQ89_06015	COG0622	Phosphoesterase
CPQ89_06055	COG0765	amino acid transport
CPQ89_06060	COG1126	abc transporter atp-binding protein
CPQ89_06090	COG1482	cell wall glycoprotein biosynthetic process
CPQ89_06100	COG4842	Belongs to the WXG100 family
CPQ89_06120	COG4499	WXG100 protein secretion system (Wss), protein YukC
CPQ89_06125	COG1674	ftsk spoiiie
CPQ89_06220	COG3442	glutamine amidotransferase
CPQ89_06225	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CPQ89_06230	COG1435	thymidine kinase activity
CPQ89_06240	COG2890	protein-(glutamine-N5) methyltransferase activity
CPQ89_06245	COG0009	L-threonylcarbamoyladenylate synthase
CPQ89_06255	COG0356	it plays a direct role in the translocation of protons across the membrane
CPQ89_06285	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CPQ89_06300	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CPQ89_06305	COG1077	Cell shape determining protein MreB Mrl
CPQ89_06310	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CPQ89_06320	COG0772	Belongs to the SEDS family
CPQ89_06325	COG1393	Belongs to the ArsC family
CPQ89_06330	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CPQ89_06340	COG0719	Fe-S assembly protein
CPQ89_06345	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CPQ89_06360	COG3279	Response regulator of the LytR AlgR family
CPQ89_06405	COG0531	amino acid
CPQ89_06425	COG2818	Glycosylase
CPQ89_06450	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CPQ89_06455	COG2918	glutathione biosynthetic process
CPQ89_06455	COG0189	ligase activity
CPQ89_06470	COG0726	polysaccharide deacetylase
CPQ89_06480	COG1956	GAF domain-containing protein
CPQ89_06485	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
CPQ89_06490	COG1104	cysteine desulfurase activity
CPQ89_06500	COG0525	valine-tRNA ligase activity
CPQ89_06515	COG2003	Belongs to the UPF0758 family
CPQ89_06525	COG1077	Cell shape determining protein MreB Mrl
CPQ89_06540	COG0850	regulation of cytokinetic process
CPQ89_06545	COG2894	cell division
CPQ89_06550	COG0765	amino acid transport
CPQ89_06555	COG1126	abc transporter atp-binding protein
CPQ89_06565	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CPQ89_06595	COG0768	penicillin binding
CPQ89_06630	COG1799	cell septum assembly
CPQ89_06640	COG2302	S4 RNA-binding domain
CPQ89_06645	COG3599	regulation of cell shape
CPQ89_06665	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CPQ89_06670	COG1104	cysteine desulfurase activity
CPQ89_06695	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CPQ89_06700	COG1597	lipid kinase activity
CPQ89_06710	COG5503	Protein of unknown function (DUF1447)
CPQ89_06730	COG4476	Belongs to the UPF0223 family
CPQ89_06735	COG0483	inositol monophosphate 1-phosphatase activity
CPQ89_06740	COG1217	gtp-binding protein TYPA
CPQ89_06745	COG4838	Belongs to the UPF0358 family
CPQ89_06750	COG0772	Belongs to the SEDS family
CPQ89_06755	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
CPQ89_06765	COG4471	UPF0298 protein
CPQ89_06770	COG0742	ribosomal rna small subunit methyltransferase
CPQ89_06775	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CPQ89_06785	COG1555	photosystem II stabilization
CPQ89_06785	COG1596	polysaccharide export
CPQ89_06790	COG2131	deaminase
CPQ89_06800	COG1466	dna polymerase III delta subunit
CPQ89_06840	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
CPQ89_06845	COG0745	RESPONSE REGULATOR receiver
CPQ89_06850	COG5002	protein histidine kinase activity
CPQ89_06855	COG0706	membrane insertase activity
CPQ89_06860	COG1254	Belongs to the acylphosphatase family
CPQ89_06865	COG3425	synthase
CPQ89_06915	COG4608	Belongs to the ABC transporter superfamily
CPQ89_06920	COG0601	transmembrane transport
CPQ89_06925	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CPQ89_06940	COG2826	transposase and inactivated derivatives, IS30 family
CPQ89_06945	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CPQ89_06960	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
CPQ89_06965	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CPQ89_06975	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CPQ89_06980	COG1713	HD superfamily hydrolase involved in NAD metabolism
CPQ89_06985	COG0799	negative regulation of ribosome biogenesis
CPQ89_06990	COG2226	methyltransferase
CPQ89_07020	COG0765	amino acid transport
CPQ89_07025	COG1126	abc transporter atp-binding protein
CPQ89_07040	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CPQ89_07040	COG2755	lipolytic protein G-D-S-L family
CPQ89_07055	COG0300	oxidoreductase activity
CPQ89_07065	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
CPQ89_07065	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CPQ89_07075	COG0569	domain protein
CPQ89_07085	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CPQ89_07090	COG1696	Membrane protein involved in D-alanine export
CPQ89_07095	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CPQ89_07100	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
CPQ89_07110	COG0768	penicillin binding
CPQ89_07120	COG0457	Tetratricopeptide repeat
CPQ89_07120	COG0705	Rhomboid family
CPQ89_07130	COG1940	carbohydrate kinase activity
CPQ89_07140	COG0330	HflC and HflK could
CPQ89_07160	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
CPQ89_07165	COG0789	Transcriptional regulator
CPQ89_07185	COG1758	RNA polymerase activity
CPQ89_07190	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CPQ89_07195	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CPQ89_07205	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CPQ89_07205	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CPQ89_07210	COG0631	protein serine/threonine phosphatase activity
CPQ89_07215	COG2815	serine threonine protein kinase
CPQ89_07215	COG0515	serine threonine protein kinase
CPQ89_07220	COG1162	GTPase activity
CPQ89_07225	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CPQ89_07235	COG4166	transmembrane transport
CPQ89_07245	COG1302	Protein conserved in bacteria
CPQ89_07250	COG1461	Dihydroxyacetone kinase
CPQ89_07255	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CPQ89_07265	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CPQ89_07275	COG1196	nuclear chromosome segregation
CPQ89_07280	COG0552	protein localization to endoplasmic reticulum
CPQ89_07290	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CPQ89_07300	COG1837	Belongs to the UPF0109 family
CPQ89_07305	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CPQ89_07315	COG1247	-acetyltransferase
CPQ89_07345	COG1733	regulation of RNA biosynthetic process
CPQ89_07355	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CPQ89_07355	COG0072	phenylalanine-tRNA ligase activity
CPQ89_07370	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CPQ89_07380	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CPQ89_07410	COG2264	protein methyltransferase activity
CPQ89_07415	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CPQ89_07425	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CPQ89_07440	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CPQ89_07450	COG0006	proline dipeptidase activity
CPQ89_07455	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CPQ89_07460	COG1302	Protein conserved in bacteria
CPQ89_07475	COG1570	exodeoxyribonuclease VII activity
CPQ89_07480	COG1722	exodeoxyribonuclease VII activity
CPQ89_07490	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
CPQ89_07495	COG1438	arginine binding
CPQ89_07500	COG0497	DNA recombination
CPQ89_07510	COG4224	UPF0291 protein
CPQ89_07520	COG0204	Acyl-transferase
CPQ89_07525	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CPQ89_07530	COG2827	Endonuclease containing a URI domain
CPQ89_07535	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CPQ89_07550	COG2996	Protein conserved in bacteria
CPQ89_07555	COG0735	belongs to the Fur family
CPQ89_07580	COG1187	pseudouridine synthase activity
CPQ89_07585	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
CPQ89_07590	COG1914	H( )-stimulated, divalent metal cation uptake system
CPQ89_07595	COG4955	Helix-turn-helix domain
CPQ89_07600	COG0514	ATP-dependent DNA helicase (RecQ)
CPQ89_07615	COG0539	negative regulation of cytoplasmic translation
CPQ89_07635	COG0745	RESPONSE REGULATOR receiver
CPQ89_07640	COG2205	protein histidine kinase activity
CPQ89_07645	COG1136	(ABC) transporter
CPQ89_07670	COG0393	Putative heavy-metal-binding
CPQ89_07685	COG1942	4-Oxalocrotonate Tautomerase
CPQ89_07690	COG0561	phosphatase activity
CPQ89_07695	COG1073	alpha beta
CPQ89_07700	COG2151	metal-sulfur cluster biosynthetic enzyme
CPQ89_07710	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
CPQ89_07710	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CPQ89_07730	COG1304	FMN binding
CPQ89_07750	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CPQ89_07750	COG1199	ATP-dependent helicase activity
CPQ89_07760	COG0436	Aminotransferase
CPQ89_07775	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CPQ89_07785	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CPQ89_07835	COG0116	Belongs to the methyltransferase superfamily
CPQ89_07840	COG0328	RNA-DNA hybrid ribonuclease activity
CPQ89_07860	COG0564	pseudouridine synthase activity
CPQ89_07870	COG2233	PERMEase
CPQ89_07885	COG0505	Belongs to the CarA family
CPQ89_07895	COG0167	dihydroorotate dehydrogenase activity
CPQ89_07910	COG1316	TRANSCRIPTIONal
CPQ89_07915	COG0583	DNA-binding transcription factor activity
CPQ89_07920	COG1227	inorganic diphosphatase activity
CPQ89_07930	COG1268	BioY protein
CPQ89_07935	COG0436	Aminotransferase
CPQ89_07985	COG0187	DNA topoisomerase II activity
CPQ89_07995	COG1293	RNA-binding protein homologous to eukaryotic snRNP
CPQ89_08000	COG1307	EDD domain protein, DegV family
CPQ89_08060	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CPQ89_08065	COG4974	Belongs to the 'phage' integrase family
CPQ89_08075	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CPQ89_08080	COG0758	DNA mediated transformation
CPQ89_08095	COG0681	Belongs to the peptidase S26 family
CPQ89_08100	COG0793	Belongs to the peptidase S41A family
CPQ89_08100	COG3409	Peptidoglycan-binding domain 1 protein
CPQ89_08105	COG4479	Belongs to the UPF0346 family
CPQ89_08115	COG2755	lipolytic protein G-D-S-L family
CPQ89_08125	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CPQ89_08135	COG0488	(ABC) transporter
CPQ89_08145	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CPQ89_08155	COG0457	Tetratricopeptide repeat
CPQ89_08160	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CPQ89_08165	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CPQ89_08170	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CPQ89_08175	COG1473	amidohydrolase
CPQ89_08180	COG2171	N-acyltransferase activity
CPQ89_08185	COG0019	diaminopimelate decarboxylase activity
CPQ89_08205	COG0587	DNA-directed DNA polymerase activity
CPQ89_08215	COG0542	response to heat
CPQ89_08225	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CPQ89_08230	COG2384	SAM-dependent methyltransferase
CPQ89_08315	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CPQ89_08320	COG0358	DNA primase activity
CPQ89_08355	COG0679	Auxin Efflux Carrier
CPQ89_08380	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CPQ89_08390	COG1702	phosphate starvation-inducible protein PhoH
CPQ89_08395	COG1610	YqeY-like protein
CPQ89_08410	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
CPQ89_08415	COG1216	Glycosyl transferase, family 2
CPQ89_08425	COG0438	transferase activity, transferring glycosyl groups
CPQ89_08450	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CPQ89_08475	COG0813	purine-nucleoside phosphorylase activity
CPQ89_08480	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
CPQ89_08560	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
CPQ89_08640	COG1396	sequence-specific DNA binding
CPQ89_08690	COG0484	heat shock protein binding
CPQ89_08695	COG0443	Heat shock 70 kDa protein
CPQ89_08700	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CPQ89_08710	COG0196	riboflavin kinase activity
CPQ89_08735	COG2740	Nucleic-acid-binding protein implicated in transcription termination
CPQ89_08740	COG0195	Participates in both transcription termination and antitermination
CPQ89_08775	COG0750	zinc metalloprotease
CPQ89_08785	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CPQ89_08800	COG4991	sh3 domain protein
CPQ89_08800	COG3103	Sh3 type 3 domain protein
CPQ89_08800	COG0860	N-Acetylmuramoyl-L-alanine amidase
CPQ89_08805	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CPQ89_08830	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CPQ89_08830	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
CPQ89_08840	COG1598	PFAM Uncharacterised protein family UPF0150
CPQ89_08855	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CPQ89_08890	COG4974	Belongs to the 'phage' integrase family
CPQ89_08935	COG0783	Belongs to the Dps family
CPQ89_08980	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CPQ89_08985	COG1959	2 iron, 2 sulfur cluster binding
CPQ89_09100	COG1484	DNA-dependent DNA replication
CPQ89_09115	COG0237	dephospho-CoA kinase activity
CPQ89_09125	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CPQ89_09125	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CPQ89_09130	COG0732	type I restriction modification DNA specificity domain
CPQ89_09145	COG4974	Belongs to the 'phage' integrase family
CPQ89_09155	COG0732	type I restriction modification DNA specificity domain
CPQ89_09160	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CPQ89_09165	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
CPQ89_09180	COG0670	Belongs to the BI1 family
CPQ89_09190	COG0584	glycerophosphoryl diester phosphodiesterase
CPQ89_09215	COG1674	ftsk spoiiie
CPQ89_09220	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CPQ89_09225	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CPQ89_09235	COG0510	thiamine kinase activity
CPQ89_09240	COG4473	ABC transporter
CPQ89_09245	COG1131	(ABC) transporter
CPQ89_09255	COG0537	adenosine 5'-monophosphoramidase activity
CPQ89_09280	COG3481	metal-dependent phosphohydrolase, HD sub domain
CPQ89_09290	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CPQ89_09295	COG1438	arginine binding
CPQ89_09320	COG0583	DNA-binding transcription factor activity
CPQ89_09360	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CPQ89_09365	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CPQ89_09370	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CPQ89_09375	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CPQ89_09380	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CPQ89_09390	COG1428	Deoxynucleoside kinase
CPQ89_09400	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CPQ89_09405	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CPQ89_09410	COG1426	Protein conserved in bacteria
CPQ89_09415	COG1028	Short-chain dehydrogenase reductase Sdr
CPQ89_09420	COG0612	Peptidase, M16
CPQ89_09425	COG0612	Peptidase, M16
CPQ89_09430	COG1674	ftsk spoiiie
CPQ89_09450	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CPQ89_09475	COG2706	6-phosphogluconolactonase activity
CPQ89_09480	COG3142	Participates in the control of copper homeostasis
CPQ89_09490	COG2239	Acts as a magnesium transporter
CPQ89_09495	COG0564	pseudouridine synthase activity
CPQ89_09505	COG2357	RelA SpoT domain protein
CPQ89_09525	COG4862	establishment of competence for transformation
CPQ89_09530	COG1393	Belongs to the ArsC family
CPQ89_09540	COG1328	CTP reductase activity
CPQ89_09545	COG4475	Protein of unknown function (DUF436)
CPQ89_09555	COG0557	exoribonuclease II activity
CPQ89_09560	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CPQ89_09565	COG0038	chloride channel
CPQ89_09595	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CPQ89_09615	COG3942	CHAP domain
CPQ89_09615	COG1388	LysM domain
CPQ89_09780	COG3723	Recombinational DNA repair protein, rece pathway
CPQ89_09875	COG1760	l-serine dehydratase
CPQ89_09880	COG1760	l-serine dehydratase
CPQ89_09890	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CPQ89_09895	COG0556	nucleotide-excision repair
CPQ89_09900	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CPQ89_09940	COG0492	ferredoxin-NADP+ reductase activity
CPQ89_09945	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CPQ89_09950	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CPQ89_09955	COG1950	PFAM Membrane protein of
CPQ89_09965	COG5002	protein histidine kinase activity
CPQ89_09970	COG0745	RESPONSE REGULATOR receiver
CPQ89_09980	COG2177	Part of the ABC transporter FtsEX involved in
CPQ89_09985	COG2884	Cell division ATP-binding protein ftsE
CPQ89_10005	COG1040	competence protein
CPQ89_10010	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
CPQ89_10015	COG1739	Uncharacterized protein family UPF0029
CPQ89_10020	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CPQ89_10025	COG0531	amino acid
CPQ89_10050	COG0488	(ABC) transporter
CPQ89_10065	COG1214	PFAM Peptidase M22, glycoprotease
CPQ89_10090	COG0470	DNA polymerase III
CPQ89_10095	COG3870	Protein conserved in bacteria
CPQ89_10120	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CPQ89_10130	COG0590	tRNA wobble adenosine to inosine editing
CPQ89_10135	COG2813	Specifically methylates the guanine in position
CPQ89_10160	COG2826	transposase and inactivated derivatives, IS30 family
CPQ89_10190	COG0673	inositol 2-dehydrogenase activity
CPQ89_10200	COG2197	response regulator
CPQ89_10215	COG1131	(ABC) transporter
CPQ89_10250	COG5646	InterPro IPR014922
CPQ89_10265	COG0431	NADPH-dependent FMN reductase
CPQ89_10265	COG3976	FMN-binding domain protein
CPQ89_10265	COG1053	succinate dehydrogenase
CPQ89_10280	COG2814	Major facilitator Superfamily
CPQ89_10310	COG1476	TRANSCRIPTIONal
CPQ89_10365	COG2211	Major facilitator Superfamily
CPQ89_10375	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CPQ89_10380	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CPQ89_10390	COG1120	ATPase activity
CPQ89_10405	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CPQ89_10415	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CPQ89_10420	COG1597	lipid kinase activity
CPQ89_10455	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CPQ89_10460	COG2233	PERMEase
CPQ89_10470	COG1705	Flagellar rod assembly protein muramidase FlgJ
CPQ89_10475	COG4684	Psort location CytoplasmicMembrane, score
CPQ89_10485	COG0281	malic enzyme
CPQ89_10490	COG0583	DNA-binding transcription factor activity
CPQ89_10505	COG2261	transglycosylase associated protein
CPQ89_10515	COG1302	Protein conserved in bacteria
CPQ89_10535	COG1396	sequence-specific DNA binding
CPQ89_10565	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CPQ89_10570	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CPQ89_10590	COG1078	dGTPase activity
CPQ89_10600	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CPQ89_10635	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CPQ89_10640	COG0488	(ABC) transporter
CPQ89_10655	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CPQ89_10665	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CPQ89_10675	COG0165	Argininosuccinate lyase
CPQ89_10695	COG0095	Lipoate-protein ligase
CPQ89_10720	COG2814	Major facilitator Superfamily
CPQ89_10725	COG4466	Protein conserved in bacteria
CPQ89_10740	COG0084	hydrolase, TatD family'
CPQ89_10745	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CPQ89_10745	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CPQ89_10750	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CPQ89_10765	COG3583	domain protein
CPQ89_10775	COG0248	Ppx GppA phosphatase
CPQ89_10785	COG0366	Alpha amylase catalytic
CPQ89_10790	COG0395	ABC-type sugar transport system, permease component
CPQ89_10795	COG1175	transmembrane transport
CPQ89_10800	COG1653	transport
CPQ89_10810	COG0366	Alpha amylase catalytic
CPQ89_10815	COG3842	ATPase activity
CPQ89_10820	COG2508	Transcriptional regulator
CPQ89_10830	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CPQ89_10835	COG0477	Major facilitator Superfamily
CPQ89_10835	COG0477	Major facilitator Superfamily
CPQ89_10840	COG1136	(ABC) transporter
CPQ89_10840	COG0577	efflux transmembrane transporter activity
CPQ89_10845	COG1136	(ABC) transporter
CPQ89_10845	COG0577	efflux transmembrane transporter activity
CPQ89_10855	COG3973	AAA domain
CPQ89_10930	COG1988	membrane-bound metal-dependent
CPQ89_10935	COG0419	ATPase involved in DNA repair
CPQ89_10940	COG0420	3'-5' exonuclease activity
CPQ89_10945	COG0110	maltose O-acetyltransferase activity
CPQ89_10965	COG0736	holo-[acyl-carrier-protein] synthase activity
CPQ89_10975	COG1139	Iron-sulfur cluster binding protein
CPQ89_10980	COG0247	lactate metabolic process
CPQ89_10985	COG1252	NADH dehydrogenase
CPQ89_11000	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CPQ89_11005	COG4988	ABC transporter
CPQ89_11010	COG1294	oxidase, subunit
CPQ89_11015	COG1271	oxidase subunit
CPQ89_11045	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CPQ89_11055	COG1704	LemA family
CPQ89_11080	COG1132	(ABC) transporter
CPQ89_11105	COG1053	succinate dehydrogenase
CPQ89_11125	COG3682	Transcriptional regulator
CPQ89_11130	COG1968	undecaprenyl-diphosphatase activity
CPQ89_11135	COG0586	Pfam SNARE associated Golgi protein
CPQ89_11140	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CPQ89_11155	COG0551	DNA topoisomerase type I activity
CPQ89_11155	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone