LG3211_0001 SM00382 ATPases associated with a variety of cellular activities LG3211_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain LG3211_0002 SM00480 DNA polymerase III beta subunit LG3211_0004 SM00387 Histidine kinase-like ATPases LG3211_0004 SM00433 TopoisomeraseII LG3211_0007 SM00028 Tetratricopeptide repeats LG3211_0015 SM00155 Phospholipase D. Active site motifs. LG3211_0018 SM00729 Elongator protein 3, MiaB family, Radical SAM LG3211_0022 SM00342 helix_turn_helix, arabinose operon control protein LG3211_0026 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LG3211_0026 SM00091 PAS domain LG3211_0026 SM00387 Histidine kinase-like ATPases LG3211_0026 SM00388 His Kinase A (phosphoacceptor) domain LG3211_0027 SM00448 cheY-homologous receiver domain LG3211_0037 SM00382 ATPases associated with a variety of cellular activities LG3211_0046 SM00448 cheY-homologous receiver domain LG3211_0046 SM00862 Transcriptional regulatory protein, C terminal LG3211_0047 SM00387 Histidine kinase-like ATPases LG3211_0047 SM00388 His Kinase A (phosphoacceptor) domain LG3211_0053 SM00421 helix_turn_helix, Lux Regulon LG3211_0053 SM00448 cheY-homologous receiver domain LG3211_0068 SM00344 helix_turn_helix ASNC type LG3211_0089 SM00382 ATPases associated with a variety of cellular activities LG3211_0103 SM00989 LG3211_0103 LG3211_0109 SM00382 ATPases associated with a variety of cellular activities LG3211_0112 SM01228 LG3211_0112 LG3211_0120 SM01060 LG3211_0120 LG3211_0130 SM00345 helix_turn_helix gluconate operon transcriptional repressor LG3211_0130 SM00866 LG3211_0130 LG3211_0137 SM00354 helix_turn _helix lactose operon repressor LG3211_0142 SM00155 Phospholipase D. Active site motifs. LG3211_0143 SM00867 YceI-like domain LG3211_0144 SM00855 Phosphoglycerate mutase family LG3211_0150 SM00382 ATPases associated with a variety of cellular activities LG3211_0151 SM00421 helix_turn_helix, Lux Regulon LG3211_0151 SM00448 cheY-homologous receiver domain LG3211_0160 SM00248 ankyrin repeats LG3211_0164 SM00248 ankyrin repeats LG3211_0165 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LG3211_0165 SM00091 PAS domain LG3211_0165 SM00387 Histidine kinase-like ATPases LG3211_0165 SM00388 His Kinase A (phosphoacceptor) domain LG3211_0165 SM00448 cheY-homologous receiver domain LG3211_0166 SM00052 Putative diguanylate phosphodiesterase LG3211_0176 SM00563 Phosphate acyltransferases LG3211_0179 SM00829 Enoylreductase LG3211_0180 SM00028 Tetratricopeptide repeats LG3211_0189 SM01230 LG3211_0189 LG3211_0192 SM00938 Nitrogen regulatory protein P-II LG3211_0201 SM00354 helix_turn _helix lactose operon repressor LG3211_0204 SM00448 cheY-homologous receiver domain LG3211_0214 SM00421 helix_turn_helix, Lux Regulon LG3211_0214 SM00448 cheY-homologous receiver domain LG3211_0215 SM00387 Histidine kinase-like ATPases LG3211_0215 SM00388 His Kinase A (phosphoacceptor) domain LG3211_0225 SM00382 ATPases associated with a variety of cellular activities LG3211_0239 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LG3211_0248 SM00382 ATPases associated with a variety of cellular activities LG3211_0262 SM00812 Alpha-L-fucosidase LG3211_0263 SM00812 Alpha-L-fucosidase LG3211_0270 SM00965 Secretin and TonB N terminus short domain LG3211_0272 SM00028 Tetratricopeptide repeats LG3211_0282 SM00965 Secretin and TonB N terminus short domain LG3211_0289 SM01038 Beta galactosidase small chain LG3211_0292 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LG3211_0300 SM00345 helix_turn_helix gluconate operon transcriptional repressor LG3211_0300 SM00895 LG3211_0300 LG3211_0301 SM00656 LG3211_0301 LG3211_0303 SM00354 helix_turn _helix lactose operon repressor LG3211_0305 SM00354 helix_turn _helix lactose operon repressor LG3211_0311 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LG3211_0315 SM00387 Histidine kinase-like ATPases LG3211_0316 SM00448 cheY-homologous receiver domain LG3211_0316 SM00850 LytTr DNA-binding domain LG3211_0321 SM00387 Histidine kinase-like ATPases LG3211_0321 SM00388 His Kinase A (phosphoacceptor) domain LG3211_0322 SM00382 ATPases associated with a variety of cellular activities LG3211_0322 SM00448 cheY-homologous receiver domain LG3211_0332 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain LG3211_0339 SM00450 Rhodanese Homology Domain LG3211_0348 SM00382 ATPases associated with a variety of cellular activities LG3211_0393 SM00563 Phosphate acyltransferases LG3211_0394 SM00345 helix_turn_helix gluconate operon transcriptional repressor LG3211_0394 SM00895 LG3211_0394 LG3211_0395 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins LG3211_0400 SM00100 Cyclic nucleotide-monophosphate binding domain LG3211_0400 SM00267 diguanylate cyclase LG3211_0401 SM00028 Tetratricopeptide repeats LG3211_0409 SM00342 helix_turn_helix, arabinose operon control protein LG3211_0423 SM00938 Nitrogen regulatory protein P-II LG3211_0437 SM00836 DALR anticodon binding domain LG3211_0437 SM01016 Arginyl tRNA synthetase N terminal dom LG3211_0466 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LG3211_0466 SM00245 tail specific protease LG3211_0476 SM00257 Lysin motif LG3211_0496 SM00400 zinc finger LG3211_0496 SM00493 LG3211_0496 LG3211_0496 SM00766 DNA primase DnaG DnaB-binding LG3211_0501 SM00905 Dihydroneopterin aldolase LG3211_0507 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LG3211_0517 SM01126 LG3211_0517 LG3211_0526 SM00642 Alpha-amylase domain LG3211_0530 SM00642 Alpha-amylase domain LG3211_0531 SM00354 helix_turn _helix lactose operon repressor LG3211_0541 SM00829 Enoylreductase LG3211_0545 SM00342 helix_turn_helix, arabinose operon control protein LG3211_0555 SM00345 helix_turn_helix gluconate operon transcriptional repressor LG3211_0573 SM00450 Rhodanese Homology Domain LG3211_0580 SM01154 LG3211_0580 LG3211_0583 SM00822 LG3211_0583 LG3211_0586 SM00448 cheY-homologous receiver domain LG3211_0586 SM00862 Transcriptional regulatory protein, C terminal LG3211_0587 SM00387 Histidine kinase-like ATPases LG3211_0587 SM00388 His Kinase A (phosphoacceptor) domain LG3211_0589 SM00919 Malic enzyme, NAD binding domain LG3211_0589 SM01274 LG3211_0589 LG3211_0618 SM00344 helix_turn_helix ASNC type LG3211_0622 SM00894 Excalibur calcium-binding domain LG3211_0627 SM00382 ATPases associated with a variety of cellular activities LG3211_0631 SM00327 von Willebrand factor (vWF) type A domain LG3211_0640 SM00644 LG3211_0640 LG3211_0642 SM00287 Bacterial SH3 domain homologues LG3211_0645 SM00357 Cold shock protein domain LG3211_0649 SM00644 LG3211_0649 LG3211_0662 SM00345 helix_turn_helix gluconate operon transcriptional repressor LG3211_0667 SM00244 prohibitin homologues LG3211_0675 SM00344 helix_turn_helix ASNC type LG3211_0688 SM00100 Cyclic nucleotide-monophosphate binding domain LG3211_0690 SM00382 ATPases associated with a variety of cellular activities LG3211_0699 SM00829 Enoylreductase LG3211_0718 SM00382 ATPases associated with a variety of cellular activities LG3211_0726 SM00822 LG3211_0726 LG3211_0728 SM00091 PAS domain LG3211_0728 SM00387 Histidine kinase-like ATPases LG3211_0729 SM00382 ATPases associated with a variety of cellular activities LG3211_0729 SM00448 cheY-homologous receiver domain LG3211_0734 SM00382 ATPases associated with a variety of cellular activities LG3211_0754 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LG3211_0772 SM00965 Secretin and TonB N terminus short domain LG3211_0775 SM00563 Phosphate acyltransferases LG3211_0783 SM00829 Enoylreductase LG3211_0787 SM00869 Autotransporter beta-domain LG3211_0796 SM01209 LG3211_0796 LG3211_0796 SM01210 LG3211_0796 LG3211_0798 SM00798 AICARFT/IMPCHase bienzyme LG3211_0798 SM00851 MGS-like domain LG3211_0802 SM00195 Dual specificity phosphatase, catalytic domain LG3211_0806 SM00563 Phosphate acyltransferases LG3211_0815 SM00878 Biotin carboxylase C-terminal domain LG3211_0827 SM00829 Enoylreductase LG3211_0829 SM00530 Helix-turn-helix XRE-family like proteins LG3211_0833 SM00883 Chaperonin 10 Kd subunit LG3211_0850 SM00867 YceI-like domain LG3211_0866 SM01329 LG3211_0866 LG3211_0869 SM00917 LeuA allosteric (dimerisation) domain LG3211_0887 SM00862 Transcriptional regulatory protein, C terminal LG3211_0888 SM00342 helix_turn_helix, arabinose operon control protein LG3211_0892 SM01351 LG3211_0892 LG3211_0907 SM00342 helix_turn_helix, arabinose operon control protein LG3211_0912 SM00464 Found in ATP-dependent protease La (LON) LG3211_0929 SM00382 ATPases associated with a variety of cellular activities LG3211_0931 SM00382 ATPases associated with a variety of cellular activities LG3211_0937 SM00052 Putative diguanylate phosphodiesterase LG3211_0937 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LG3211_0937 SM00091 PAS domain LG3211_0937 SM00267 diguanylate cyclase LG3211_0940 SM01011 Aminopeptidase P, N-terminal domain LG3211_0949 SM00729 Elongator protein 3, MiaB family, Radical SAM LG3211_0955 SM00072 Guanylate kinase homologues. LG3211_0956 SM01409 LG3211_0956 LG3211_0958 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LG3211_0958 SM00954 Region found in RelA / SpoT proteins LG3211_0960 SM00342 helix_turn_helix, arabinose operon control protein LG3211_0961 SM00710 Parallel beta-helix repeats LG3211_0964 SM00487 DEAD-like helicases superfamily LG3211_0964 SM00490 helicase superfamily c-terminal domain LG3211_0978 SM00965 Secretin and TonB N terminus short domain LG3211_0979 SM00382 ATPases associated with a variety of cellular activities LG3211_0982 SM00327 von Willebrand factor (vWF) type A domain LG3211_0983 SM00028 Tetratricopeptide repeats LG3211_0983 SM00327 von Willebrand factor (vWF) type A domain LG3211_0986 SM00861 Transketolase, pyrimidine binding domain LG3211_0989 SM00989 LG3211_0989 LG3211_0991 SM00382 ATPases associated with a variety of cellular activities LG3211_0998 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LG3211_1031 SM00967 RNA 2'-O ribose methyltransferase substrate binding LG3211_1045 SM00869 Autotransporter beta-domain LG3211_1054 SM00448 cheY-homologous receiver domain LG3211_1054 SM00862 Transcriptional regulatory protein, C terminal LG3211_1055 SM00387 Histidine kinase-like ATPases LG3211_1055 SM00388 His Kinase A (phosphoacceptor) domain LG3211_1063 SM00996 S-adenosyl-L-homocysteine hydrolase LG3211_1063 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LG3211_1068 SM00257 Lysin motif LG3211_1071 SM00563 Phosphate acyltransferases LG3211_1082 SM00267 diguanylate cyclase LG3211_1092 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LG3211_1095 SM00244 prohibitin homologues LG3211_1127 SM00028 Tetratricopeptide repeats LG3211_1134 SM00116 Domain in cystathionine beta-synthase and other proteins. LG3211_1152 SM00060 Fibronectin type 3 domain LG3211_1152 SM00495 Chitin-binding domain type 3 LG3211_1152 SM00636 LG3211_1152 LG3211_1156 SM00060 Fibronectin type 3 domain LG3211_1156 SM00495 Chitin-binding domain type 3 LG3211_1156 SM00636 LG3211_1156 LG3211_1165 SM00867 YceI-like domain LG3211_1167 SM00867 YceI-like domain LG3211_1168 SM00387 Histidine kinase-like ATPases LG3211_1168 SM00388 His Kinase A (phosphoacceptor) domain LG3211_1168 SM00448 cheY-homologous receiver domain LG3211_1169 SM00387 Histidine kinase-like ATPases LG3211_1169 SM00388 His Kinase A (phosphoacceptor) domain LG3211_1169 SM00448 cheY-homologous receiver domain LG3211_1170 SM00387 Histidine kinase-like ATPases LG3211_1170 SM00388 His Kinase A (phosphoacceptor) domain LG3211_1170 SM00448 cheY-homologous receiver domain LG3211_1176 SM00342 helix_turn_helix, arabinose operon control protein LG3211_1198 SM00487 DEAD-like helicases superfamily LG3211_1223 SM00732 Likely ribonuclease with RNase H fold. LG3211_1226 SM00116 Domain in cystathionine beta-synthase and other proteins. LG3211_1226 SM00924 MgtE intracellular N domain LG3211_1238 SM00382 ATPases associated with a variety of cellular activities LG3211_1242 SM00116 Domain in cystathionine beta-synthase and other proteins. LG3211_1250 SM00345 helix_turn_helix gluconate operon transcriptional repressor LG3211_1250 SM00866 LG3211_1250 LG3211_1251 SM00120 Hemopexin-like repeats. LG3211_1252 SM00028 Tetratricopeptide repeats LG3211_1252 SM00091 PAS domain LG3211_1269 SM00506 Appr-1"-p processing enzyme LG3211_1292 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. LG3211_1299 SM00382 ATPases associated with a variety of cellular activities LG3211_1304 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain LG3211_1311 SM00342 helix_turn_helix, arabinose operon control protein LG3211_1327 SM00838 Elongation factor G C-terminus LG3211_1327 SM00889 Elongation factor G, domain IV LG3211_1345 SM00838 Elongation factor G C-terminus LG3211_1345 SM00889 Elongation factor G, domain IV LG3211_1346 SM00829 Enoylreductase LG3211_1356 SM00363 S4 RNA-binding domain LG3211_1361 SM00829 Enoylreductase LG3211_1370 SM00855 Phosphoglycerate mutase family LG3211_1384 SM00347 helix_turn_helix multiple antibiotic resistance protein LG3211_1394 SM00342 helix_turn_helix, arabinose operon control protein LG3211_1394 SM00478 endonuclease III LG3211_1394 SM01009 AlkA N-terminal domain LG3211_1396 SM00060 Fibronectin type 3 domain LG3211_1412 SM00829 Enoylreductase LG3211_1422 SM00829 Enoylreductase LG3211_1426 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LG3211_1431 SM00487 DEAD-like helicases superfamily LG3211_1431 SM00490 helicase superfamily c-terminal domain LG3211_1457 SM00869 Autotransporter beta-domain LG3211_1470 SM00098 Alkaline phosphatase homologues LG3211_1472 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LG3211_1482 SM01126 LG3211_1482 LG3211_1500 SM00387 Histidine kinase-like ATPases LG3211_1500 SM00433 TopoisomeraseII LG3211_1507 SM01192 LG3211_1507 LG3211_1507 SM01193 LG3211_1507 LG3211_1513 SM00463 Small MutS-related domain LG3211_1514 SM00421 helix_turn_helix, Lux Regulon LG3211_1518 SM00257 Lysin motif LG3211_1529 SM01103 LG3211_1529 LG3211_1531 SM00382 ATPases associated with a variety of cellular activities LG3211_1537 SM00244 prohibitin homologues LG3211_1538 SM00244 prohibitin homologues LG3211_1542 SM00788 Adenylosuccinate synthetase LG3211_1547 SM00028 Tetratricopeptide repeats LG3211_1548 SM00248 ankyrin repeats LG3211_1562 SM00448 cheY-homologous receiver domain LG3211_1562 SM00850 LytTr DNA-binding domain LG3211_1563 SM00387 Histidine kinase-like ATPases LG3211_1565 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LG3211_1565 SM00267 diguanylate cyclase LG3211_1576 SM00327 von Willebrand factor (vWF) type A domain LG3211_1578 SM00220 Serine/Threonine protein kinases, catalytic domain LG3211_1586 SM00862 Transcriptional regulatory protein, C terminal LG3211_1590 SM00342 helix_turn_helix, arabinose operon control protein LG3211_1592 SM00382 ATPases associated with a variety of cellular activities LG3211_1604 SM00421 helix_turn_helix, Lux Regulon LG3211_1604 SM00448 cheY-homologous receiver domain LG3211_1607 SM00478 endonuclease III LG3211_1614 SM00244 prohibitin homologues LG3211_1625 SM00054 EF-hand, calcium binding motif LG3211_1633 SM00644 LG3211_1633 LG3211_1636 SM00981 LG3211_1636 LG3211_1647 SM00487 DEAD-like helicases superfamily LG3211_1647 SM00490 helicase superfamily c-terminal domain LG3211_1647 SM00982 LG3211_1647 LG3211_1647 SM01058 CarD-like/TRCF domain LG3211_1657 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LG3211_1658 SM00346 helix_turn_helix isocitrate lyase regulation LG3211_1667 SM00448 cheY-homologous receiver domain LG3211_1667 SM00862 Transcriptional regulatory protein, C terminal LG3211_1668 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LG3211_1668 SM00387 Histidine kinase-like ATPases LG3211_1668 SM00388 His Kinase A (phosphoacceptor) domain LG3211_1674 SM00014 Acid phosphatase homologues LG3211_1681 SM00387 Histidine kinase-like ATPases LG3211_1681 SM00388 His Kinase A (phosphoacceptor) domain LG3211_1682 SM00448 cheY-homologous receiver domain LG3211_1682 SM00862 Transcriptional regulatory protein, C terminal LG3211_1687 SM01329 LG3211_1687 LG3211_1691 SM00257 Lysin motif LG3211_1692 SM00849 Metallo-beta-lactamase superfamily LG3211_1695 SM00479 LG3211_1695 LG3211_1696 SM00331 Sigma factor PP2C-like phosphatases LG3211_1696 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain LG3211_1706 SM00729 Elongator protein 3, MiaB family, Radical SAM LG3211_1719 SM00382 ATPases associated with a variety of cellular activities LG3211_1722 SM00493 LG3211_1722 LG3211_1725 SM00460 Transglutaminase/protease-like homologues LG3211_1734 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LG3211_1737 SM00822 LG3211_1737 LG3211_1739 SM00825 Beta-ketoacyl synthase LG3211_1749 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LG3211_1750 SM00838 Elongation factor G C-terminus LG3211_1753 SM00358 Double-stranded RNA binding motif LG3211_1753 SM00535 Ribonuclease III family LG3211_1756 SM00448 cheY-homologous receiver domain LG3211_1761 SM01118 LG3211_1761 LG3211_1765 SM00357 Cold shock protein domain LG3211_1773 SM00382 ATPases associated with a variety of cellular activities LG3211_1777 SM00052 Putative diguanylate phosphodiesterase LG3211_1777 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LG3211_1777 SM00267 diguanylate cyclase LG3211_1778 SM00327 von Willebrand factor (vWF) type A domain LG3211_1784 SM00014 Acid phosphatase homologues LG3211_1813 SM00869 Autotransporter beta-domain LG3211_1814 SM00342 helix_turn_helix, arabinose operon control protein LG3211_1818 SM00434 DNA Topoisomerase IV LG3211_1823 SM00448 cheY-homologous receiver domain LG3211_1823 SM00862 Transcriptional regulatory protein, C terminal LG3211_1824 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LG3211_1824 SM00387 Histidine kinase-like ATPases LG3211_1824 SM00388 His Kinase A (phosphoacceptor) domain LG3211_1835 SM00758 LG3211_1835 LG3211_1844 SM00813 Alpha-L-arabinofuranosidase C-terminus LG3211_1855 SM00644 LG3211_1855 LG3211_1856 SM01120 LG3211_1856 LG3211_1858 SM00474 3'-5' exonuclease LG3211_1861 SM00822 LG3211_1861 LG3211_1863 SM00822 LG3211_1863 LG3211_1866 SM00052 Putative diguanylate phosphodiesterase LG3211_1866 SM00091 PAS domain LG3211_1866 SM00267 diguanylate cyclase LG3211_1869 SM00841 Elongation factor P, C-terminal LG3211_1869 SM01185 LG3211_1869 LG3211_1876 SM00267 diguanylate cyclase LG3211_1884 SM00840 LG3211_1884 LG3211_1892 SM00859 Semialdehyde dehydrogenase, NAD binding domain LG3211_1895 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase LG3211_1898 SM00448 cheY-homologous receiver domain LG3211_1898 SM00850 LytTr DNA-binding domain LG3211_1913 SM00822 LG3211_1913 LG3211_1916 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain LG3211_1942 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. LG3211_1943 SM00267 diguanylate cyclase LG3211_1961 SM01007 Class II Aldolase and Adducin N-terminal domain LG3211_1968 SM00342 helix_turn_helix, arabinose operon control protein LG3211_1968 SM00871 Bacterial transcription activator, effector binding domain LG3211_1972 SM00841 Elongation factor P, C-terminal LG3211_1972 SM01185 LG3211_1972 LG3211_1973 SM00822 LG3211_1973 LG3211_1990 SM01260 LG3211_1990 LG3211_2011 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. LG3211_2012 SM01068 Putative carbohydrate binding domain LG3211_2015 SM00052 Putative diguanylate phosphodiesterase LG3211_2015 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LG3211_2015 SM00091 PAS domain LG3211_2015 SM00267 diguanylate cyclase LG3211_2020 SM00878 Biotin carboxylase C-terminal domain LG3211_2024 SM00899 LG3211_2024 LG3211_2038 SM00869 Autotransporter beta-domain LG3211_2040 SM01057 Eukaryotic-type carbonic anhydrase LG3211_2041 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LG3211_2042 SM00645 Papain family cysteine protease LG3211_2080 SM00421 helix_turn_helix, Lux Regulon LG3211_2086 SM00710 Parallel beta-helix repeats LG3211_2109 SM00245 tail specific protease LG3211_2134 SM00829 Enoylreductase LG3211_2135 SM00422 helix_turn_helix, mercury resistance LG3211_2145 SM00869 Autotransporter beta-domain LG3211_2148 SM00450 Rhodanese Homology Domain LG3211_2161 SM01359 LG3211_2161 LG3211_2161 SM01360 LG3211_2161 LG3211_2167 SM00530 Helix-turn-helix XRE-family like proteins LG3211_2169 SM00028 Tetratricopeptide repeats LG3211_2169 SM00862 Transcriptional regulatory protein, C terminal LG3211_2174 SM00257 Lysin motif LG3211_2183 SM00859 Semialdehyde dehydrogenase, NAD binding domain LG3211_2195 SM00986 Uracil DNA glycosylase superfamily LG3211_2195 SM00987 UreE urease accessory protein, C-terminal domain LG3211_2204 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LG3211_2205 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LG3211_2216 SM00316 Ribosomal protein S1-like RNA-binding domain LG3211_2216 SM00322 K homology RNA-binding domain LG3211_2221 SM01387 LG3211_2221 LG3211_2223 SM00316 Ribosomal protein S1-like RNA-binding domain LG3211_2223 SM00322 K homology RNA-binding domain LG3211_2236 SM00822 LG3211_2236 LG3211_2237 SM00822 LG3211_2237 LG3211_2241 SM00473 divergent subfamily of APPLE domains LG3211_2249 SM00387 Histidine kinase-like ATPases LG3211_2249 SM00388 His Kinase A (phosphoacceptor) domain LG3211_2250 SM00448 cheY-homologous receiver domain LG3211_2251 SM00481 DNA polymerase alpha chain like domain LG3211_2259 SM00953 LG3211_2259 LG3211_2277 SM00829 Enoylreductase LG3211_2278 SM00448 cheY-homologous receiver domain LG3211_2278 SM00862 Transcriptional regulatory protein, C terminal LG3211_2279 SM00100 Cyclic nucleotide-monophosphate binding domain LG3211_2279 SM00419 helix_turn_helix, cAMP Regulatory protein LG3211_2280 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LG3211_2280 SM00091 PAS domain LG3211_2280 SM00387 Histidine kinase-like ATPases LG3211_2280 SM00388 His Kinase A (phosphoacceptor) domain LG3211_2280 SM00448 cheY-homologous receiver domain LG3211_2286 SM00749 bacterial OsmY and nodulation domain LG3211_2296 SM00091 PAS domain LG3211_2296 SM00387 Histidine kinase-like ATPases LG3211_2296 SM00388 His Kinase A (phosphoacceptor) domain LG3211_2296 SM01079 LG3211_2296 LG3211_2307 SM00271 DnaJ molecular chaperone homology domain LG3211_2313 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain LG3211_2315 SM00851 MGS-like domain LG3211_2315 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LG3211_2331 SM00758 LG3211_2331 LG3211_2336 SM00937 LG3211_2336 LG3211_2338 SM00448 cheY-homologous receiver domain LG3211_2338 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LG3211_2339 SM00073 Histidine Phosphotransfer domain LG3211_2339 SM00387 Histidine kinase-like ATPases LG3211_2339 SM00388 His Kinase A (phosphoacceptor) domain LG3211_2339 SM00448 cheY-homologous receiver domain LG3211_2346 SM00062 Bacterial periplasmic substrate-binding proteins LG3211_2347 SM00382 ATPases associated with a variety of cellular activities LG3211_2350 SM00966 SpoVT / AbrB like domain LG3211_2359 SM00382 ATPases associated with a variety of cellular activities LG3211_2359 SM01086 C-terminal, D2-small domain, of ClpB protein LG3211_2365 SM00316 Ribosomal protein S1-like RNA-binding domain LG3211_2370 SM01002 Alanine dehydrogenase/PNT, C-terminal domain LG3211_2370 SM01003 Alanine dehydrogenase/PNT, N-terminal domain LG3211_2372 SM00382 ATPases associated with a variety of cellular activities LG3211_2372 SM00843 LG3211_2372 LG3211_2376 SM00382 ATPases associated with a variety of cellular activities LG3211_2384 SM00560 LamG-like jellyroll fold domain LG3211_2391 SM00912 haemagglutination activity domain LG3211_2397 SM00382 ATPases associated with a variety of cellular activities LG3211_2407 SM00855 Phosphoglycerate mutase family LG3211_2408 SM00822 LG3211_2408 LG3211_2409 SM00422 helix_turn_helix, mercury resistance LG3211_2411 SM00487 DEAD-like helicases superfamily LG3211_2411 SM00490 helicase superfamily c-terminal domain LG3211_2415 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen LG3211_2419 SM00749 bacterial OsmY and nodulation domain LG3211_2420 SM00974 LG3211_2420 LG3211_2424 SM00342 helix_turn_helix, arabinose operon control protein LG3211_2427 SM00642 Alpha-amylase domain LG3211_2429 SM00448 cheY-homologous receiver domain LG3211_2430 SM00387 Histidine kinase-like ATPases LG3211_2451 SM00342 helix_turn_helix, arabinose operon control protein LG3211_2455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LG3211_2455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LG3211_2456 SM00260 Two component signalling adaptor domain LG3211_2457 SM00138 Methyltransferase, chemotaxis proteins LG3211_2458 SM00260 Two component signalling adaptor domain LG3211_2459 SM00073 Histidine Phosphotransfer domain LG3211_2459 SM00260 Two component signalling adaptor domain LG3211_2459 SM00387 Histidine kinase-like ATPases LG3211_2459 SM00448 cheY-homologous receiver domain LG3211_2460 SM00448 cheY-homologous receiver domain LG3211_2461 SM00267 diguanylate cyclase LG3211_2461 SM00448 cheY-homologous receiver domain LG3211_2464 SM00344 helix_turn_helix ASNC type LG3211_2466 SM00257 Lysin motif LG3211_2471 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LG3211_2475 SM00823 Phosphopantetheine attachment site LG3211_2476 SM00823 Phosphopantetheine attachment site LG3211_2476 SM00824 Thioesterase LG3211_2478 SM00382 ATPases associated with a variety of cellular activities LG3211_2482 SM00420 helix_turn_helix, Deoxyribose operon repressor LG3211_2482 SM01134 LG3211_2482 LG3211_2494 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LG3211_2499 SM00448 cheY-homologous receiver domain LG3211_2499 SM01012 LG3211_2499 LG3211_2501 SM00925 MltA specific insert domain LG3211_2508 SM00382 ATPases associated with a variety of cellular activities LG3211_2508 SM01086 C-terminal, D2-small domain, of ClpB protein LG3211_2512 SM00421 helix_turn_helix, Lux Regulon LG3211_2512 SM00448 cheY-homologous receiver domain LG3211_2524 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LG3211_2524 SM00387 Histidine kinase-like ATPases LG3211_2524 SM00388 His Kinase A (phosphoacceptor) domain LG3211_2524 SM00448 cheY-homologous receiver domain LG3211_2527 SM00028 Tetratricopeptide repeats LG3211_2529 SM00912 haemagglutination activity domain LG3211_2540 SM00530 Helix-turn-helix XRE-family like proteins LG3211_2575 SM00530 Helix-turn-helix XRE-family like proteins LG3211_2577 SM00869 Autotransporter beta-domain LG3211_2599 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LG3211_2600 SM01092 CO dehydrogenase flavoprotein C-terminal domain LG3211_2611 SM00421 helix_turn_helix, Lux Regulon LG3211_2611 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LG3211_2615 SM00849 Metallo-beta-lactamase superfamily LG3211_2622 SM00062 Bacterial periplasmic substrate-binding proteins LG3211_2622 SM00387 Histidine kinase-like ATPases LG3211_2622 SM00388 His Kinase A (phosphoacceptor) domain LG3211_2622 SM00448 cheY-homologous receiver domain LG3211_2623 SM00421 helix_turn_helix, Lux Regulon LG3211_2623 SM00448 cheY-homologous receiver domain LG3211_2632 SM01005 Alanine racemase, C-terminal domain LG3211_2667 SM00947 Carbonic anhydrase LG3211_2672 SM00465 GIY-YIG type nucleases (URI domain) LG3211_2674 SM00479 LG3211_2674 LG3211_2691 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LG3211_2694 SM01018 B12 binding domain LG3211_2702 SM00984 UDP binding domain LG3211_2707 SM00345 helix_turn_helix gluconate operon transcriptional repressor LG3211_2708 SM00382 ATPases associated with a variety of cellular activities LG3211_2717 SM00849 Metallo-beta-lactamase superfamily LG3211_2719 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. LG3211_2721 SM00861 Transketolase, pyrimidine binding domain LG3211_2726 SM00829 Enoylreductase LG3211_2727 SM00448 cheY-homologous receiver domain LG3211_2728 SM00271 DnaJ molecular chaperone homology domain LG3211_2736 SM01359 LG3211_2736 LG3211_2736 SM01360 LG3211_2736 LG3211_2744 SM00867 YceI-like domain LG3211_2745 SM00434 DNA Topoisomerase IV LG3211_2751 SM00292 breast cancer carboxy-terminal domain LG3211_2751 SM00532 Ligase N family LG3211_2752 SM00771 ZipA, C-terminal domain (FtsZ-binding) LG3211_2753 SM00968 SMC proteins Flexible Hinge Domain LG3211_2755 SM00354 helix_turn _helix lactose operon repressor LG3211_2766 SM00382 ATPases associated with a variety of cellular activities LG3211_2778 SM00354 helix_turn _helix lactose operon repressor LG3211_2785 SM00363 S4 RNA-binding domain LG3211_2796 SM00047 Lysozyme subfamily 2 LG3211_2821 SM00382 ATPases associated with a variety of cellular activities LG3211_2851 SM00421 helix_turn_helix, Lux Regulon LG3211_2851 SM00448 cheY-homologous receiver domain LG3211_2852 SM00091 PAS domain LG3211_2852 SM00387 Histidine kinase-like ATPases LG3211_2852 SM00388 His Kinase A (phosphoacceptor) domain LG3211_2852 SM00448 cheY-homologous receiver domain LG3211_2858 SM00729 Elongator protein 3, MiaB family, Radical SAM LG3211_2868 SM00479 LG3211_2868 LG3211_2871 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LG3211_2879 SM00116 Domain in cystathionine beta-synthase and other proteins. LG3211_2879 SM01240 LG3211_2879 LG3211_2887 SM00830 Chorismate mutase type II LG3211_2888 SM00450 Rhodanese Homology Domain LG3211_2889 SM00852 Probable molybdopterin binding domain LG3211_2892 SM00564 beta-propeller repeat LG3211_2895 SM00028 Tetratricopeptide repeats LG3211_2897 SM00562 LG3211_2897 LG3211_2911 SM00411 bacterial (prokaryotic) histone like domain LG3211_2912 SM00316 Ribosomal protein S1-like RNA-binding domain LG3211_2935 SM00363 S4 RNA-binding domain LG3211_2937 SM00316 Ribosomal protein S1-like RNA-binding domain LG3211_2938 SM00421 helix_turn_helix, Lux Regulon LG3211_2938 SM00448 cheY-homologous receiver domain LG3211_2941 SM00822 LG3211_2941 LG3211_2942 SM00342 helix_turn_helix, arabinose operon control protein LG3211_2955 SM00448 cheY-homologous receiver domain LG3211_2955 SM00862 Transcriptional regulatory protein, C terminal LG3211_2956 SM00387 Histidine kinase-like ATPases LG3211_2956 SM00388 His Kinase A (phosphoacceptor) domain LG3211_2959 SM00342 helix_turn_helix, arabinose operon control protein LG3211_2961 SM00342 helix_turn_helix, arabinose operon control protein LG3211_2964 SM00849 Metallo-beta-lactamase superfamily LG3211_2968 SM00382 ATPases associated with a variety of cellular activities LG3211_2972 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LG3211_2973 SM00226 Low molecular weight phosphatase family LG3211_2992 SM00830 Chorismate mutase type II LG3211_2996 SM00240 Forkhead associated domain LG3211_3002 SM00822 LG3211_3002 LG3211_3013 SM00984 UDP binding domain LG3211_3015 SM00267 diguanylate cyclase LG3211_3025 SM00327 von Willebrand factor (vWF) type A domain LG3211_3031 SM00342 helix_turn_helix, arabinose operon control protein LG3211_3038 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LG3211_3038 SM00465 GIY-YIG type nucleases (URI domain) LG3211_3039 SM00226 Low molecular weight phosphatase family LG3211_3042 SM00382 ATPases associated with a variety of cellular activities LG3211_3045 SM00849 Metallo-beta-lactamase superfamily LG3211_3046 SM00382 ATPases associated with a variety of cellular activities LG3211_3058 SM00861 Transketolase, pyrimidine binding domain LG3211_3069 SM01351 LG3211_3069 LG3211_3072 SM00357 Cold shock protein domain LG3211_3081 SM00382 ATPases associated with a variety of cellular activities LG3211_3083 SM00316 Ribosomal protein S1-like RNA-binding domain LG3211_3083 SM00732 Likely ribonuclease with RNase H fold. LG3211_3086 SM00850 LytTr DNA-binding domain LG3211_3094 SM00862 Transcriptional regulatory protein, C terminal LG3211_3102 SM00363 S4 RNA-binding domain LG3211_3111 SM00631 LG3211_3111 LG3211_3118 SM00342 helix_turn_helix, arabinose operon control protein LG3211_3120 SM00382 ATPases associated with a variety of cellular activities LG3211_3126 SM00420 helix_turn_helix, Deoxyribose operon repressor LG3211_3126 SM01134 LG3211_3126 LG3211_3128 SM00487 DEAD-like helicases superfamily LG3211_3128 SM00490 helicase superfamily c-terminal domain LG3211_3131 SM01322 LG3211_3131 LG3211_3133 SM00729 Elongator protein 3, MiaB family, Radical SAM LG3211_3136 SM00796 Allophanate hydrolase subunit 1 LG3211_3137 SM00797 Allophanate hydrolase subunit 2 LG3211_3139 SM00220 Serine/Threonine protein kinases, catalytic domain LG3211_3158 SM00853 MutL C terminal dimerisation domain LG3211_3158 SM01340 LG3211_3158 LG3211_3160 SM00646 LG3211_3160 LG3211_3177 SM01130 LG3211_3177 LG3211_3180 SM00670 Large family of predicted nucleotide-binding domains LG3211_3188 SM00387 Histidine kinase-like ATPases LG3211_3188 SM00388 His Kinase A (phosphoacceptor) domain LG3211_3189 SM00448 cheY-homologous receiver domain LG3211_3189 SM00862 Transcriptional regulatory protein, C terminal LG3211_3194 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LG3211_3196 SM00382 ATPases associated with a variety of cellular activities LG3211_3199 SM00347 helix_turn_helix multiple antibiotic resistance protein LG3211_3209 SM00822 LG3211_3209 LG3211_3209 SM00823 Phosphopantetheine attachment site LG3211_3209 SM00824 Thioesterase LG3211_3209 SM00825 Beta-ketoacyl synthase LG3211_3209 SM00826 LG3211_3209 LG3211_3209 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LG3211_3213 SM00829 Enoylreductase LG3211_3219 SM00533 DNA-binding domain of DNA mismatch repair MUTS family LG3211_3219 SM00534 ATPase domain of DNA mismatch repair MUTS family LG3211_3220 SM00382 ATPases associated with a variety of cellular activities LG3211_3220 SM01086 C-terminal, D2-small domain, of ClpB protein LG3211_3223 SM00363 S4 RNA-binding domain LG3211_3232 SM00382 ATPases associated with a variety of cellular activities LG3211_3232 SM00962 SRP54-type protein, GTPase domain LG3211_3232 SM00963 SRP54-type protein, helical bundle domain LG3211_3235 SM00347 helix_turn_helix multiple antibiotic resistance protein LG3211_3245 SM00382 ATPases associated with a variety of cellular activities LG3211_3256 SM00904 Riboflavin kinase LG3211_3272 SM00450 Rhodanese Homology Domain LG3211_3278 SM00478 endonuclease III LG3211_3285 SM00382 ATPases associated with a variety of cellular activities LG3211_3292 SM00479 LG3211_3292 LG3211_3296 SM00967 RNA 2'-O ribose methyltransferase substrate binding LG3211_3297 SM00316 Ribosomal protein S1-like RNA-binding domain LG3211_3297 SM00357 Cold shock protein domain LG3211_3297 SM00955 LG3211_3297 LG3211_3303 SM00028 Tetratricopeptide repeats LG3211_3312 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LG3211_3326 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LG3211_3336 SM00481 DNA polymerase alpha chain like domain LG3211_3339 SM00977 TilS substrate C-terminal domain LG3211_3349 SM00316 Ribosomal protein S1-like RNA-binding domain LG3211_3361 SM00411 bacterial (prokaryotic) histone like domain LG3211_3362 SM00382 ATPases associated with a variety of cellular activities LG3211_3362 SM00464 Found in ATP-dependent protease La (LON) LG3211_3363 SM00382 ATPases associated with a variety of cellular activities LG3211_3363 SM00994 ClpX C4-type zinc finger LG3211_3363 SM01086 C-terminal, D2-small domain, of ClpB protein LG3211_3394 SM00220 Serine/Threonine protein kinases, catalytic domain LG3211_3403 SM00267 diguanylate cyclase LG3211_3403 SM01080 LG3211_3403 LG3211_3407 SM00487 DEAD-like helicases superfamily LG3211_3407 SM00490 helicase superfamily c-terminal domain LG3211_3411 SM00382 ATPases associated with a variety of cellular activities LG3211_3415 SM00849 Metallo-beta-lactamase superfamily LG3211_3415 SM01027 Beta-Casp domain LG3211_3429 SM00382 ATPases associated with a variety of cellular activities LG3211_3430 SM00382 ATPases associated with a variety of cellular activities LG3211_3432 SM00028 Tetratricopeptide repeats LG3211_3440 SM01091 Transporter associated domain LG3211_3442 SM00052 Putative diguanylate phosphodiesterase LG3211_3442 SM00267 diguanylate cyclase LG3211_3442 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LG3211_3455 SM01323 LG3211_3455 LG3211_3458 SM00421 helix_turn_helix, Lux Regulon LG3211_3458 SM00448 cheY-homologous receiver domain LG3211_3470 SM00849 Metallo-beta-lactamase superfamily LG3211_3477 SM00382 ATPases associated with a variety of cellular activities LG3211_3477 SM00962 SRP54-type protein, GTPase domain LG3211_3477 SM00963 SRP54-type protein, helical bundle domain LG3211_3479 SM00478 endonuclease III LG3211_3515 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LG3211_3515 SM00240 Forkhead associated domain LG3211_3516 SM00028 Tetratricopeptide repeats LG3211_3516 SM00220 Serine/Threonine protein kinases, catalytic domain LG3211_3517 SM00387 Histidine kinase-like ATPases LG3211_3518 SM00421 helix_turn_helix, Lux Regulon LG3211_3518 SM00448 cheY-homologous receiver domain LG3211_3522 SM00507 HNH nucleases LG3211_3524 SM00861 Transketolase, pyrimidine binding domain LG3211_3531 SM00422 helix_turn_helix, mercury resistance LG3211_3532 SM00411 bacterial (prokaryotic) histone like domain LG3211_3533 SM00873 B3/4 domain LG3211_3533 SM00874 tRNA synthetase B5 domain LG3211_3533 SM00896 Ferredoxin-fold anticodon binding domain LG3211_3541 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LG3211_3543 SM00382 ATPases associated with a variety of cellular activities LG3211_3547 SM00487 DEAD-like helicases superfamily LG3211_3547 SM00490 helicase superfamily c-terminal domain LG3211_3574 SM00382 ATPases associated with a variety of cellular activities LG3211_3600 SM01001 AIR carboxylase LG3211_3611 SM00729 Elongator protein 3, MiaB family, Radical SAM LG3211_3618 SM00382 ATPases associated with a variety of cellular activities LG3211_3621 SM00849 Metallo-beta-lactamase superfamily LG3211_3640 SM00116 Domain in cystathionine beta-synthase and other proteins. LG3211_3640 SM01091 Transporter associated domain LG3211_3662 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. LG3211_3680 SM00248 ankyrin repeats LG3211_3689 SM00823 Phosphopantetheine attachment site LG3211_3689 SM00824 Thioesterase LG3211_3690 SM00823 Phosphopantetheine attachment site LG3211_3691 SM00823 Phosphopantetheine attachment site LG3211_3692 SM00823 Phosphopantetheine attachment site LG3211_3693 SM00823 Phosphopantetheine attachment site LG3211_3693 SM01294 LG3211_3693 LG3211_3696 SM00382 ATPases associated with a variety of cellular activities LG3211_3697 SM00028 Tetratricopeptide repeats LG3211_3698 SM00736 Dystroglycan-type cadherin-like domains. LG3211_3710 SM01007 Class II Aldolase and Adducin N-terminal domain LG3211_3711 SM00100 Cyclic nucleotide-monophosphate binding domain LG3211_3711 SM00419 helix_turn_helix, cAMP Regulatory protein LG3211_3718 SM00387 Histidine kinase-like ATPases LG3211_3718 SM00388 His Kinase A (phosphoacceptor) domain LG3211_3718 SM00448 cheY-homologous receiver domain LG3211_3720 SM00421 helix_turn_helix, Lux Regulon LG3211_3720 SM00448 cheY-homologous receiver domain LG3211_3726 SM00838 Elongation factor G C-terminus LG3211_3732 SM00729 Elongator protein 3, MiaB family, Radical SAM LG3211_3735 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LG3211_3739 SM00662 RNA polymerases D LG3211_3740 SM00363 S4 RNA-binding domain LG3211_3740 SM01390 LG3211_3740 LG3211_3752 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LG3211_3753 SM01374 LG3211_3753 LG3211_3757 SM00322 K homology RNA-binding domain LG3211_3760 SM01382 LG3211_3760 LG3211_3760 SM01383 LG3211_3760 LG3211_3764 SM01403 LG3211_3764 LG3211_3766 SM00838 Elongation factor G C-terminus LG3211_3766 SM00889 Elongation factor G, domain IV LG3211_3769 SM00663 RNA polymerase I subunit A N-terminus LG3211_3775 SM00649 Ribosomal protein L11/L12 LG3211_3776 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. LG3211_3776 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LG3211_3787 SM01400 LG3211_3787 LG3211_3791 SM00028 Tetratricopeptide repeats LG3211_3794 SM00937 LG3211_3794 LG3211_3796 SM00028 Tetratricopeptide repeats LG3211_3798 SM00852 Probable molybdopterin binding domain LG3211_3799 SM00530 Helix-turn-helix XRE-family like proteins LG3211_3801 SM00530 Helix-turn-helix XRE-family like proteins LG3211_3815 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins LG3211_3815 SM00631 LG3211_3815 LG3211_3817 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins LG3211_3819 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins LG3211_3821 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins LG3211_3835 SM00345 helix_turn_helix gluconate operon transcriptional repressor LG3211_3837 SM00342 helix_turn_helix, arabinose operon control protein LG3211_3848 SM01002 Alanine dehydrogenase/PNT, C-terminal domain LG3211_3848 SM01003 Alanine dehydrogenase/PNT, N-terminal domain LG3211_3851 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs LG3211_3851 SM00475 5'-3' exonuclease LG3211_3857 SM00382 ATPases associated with a variety of cellular activities LG3211_3867 SM00028 Tetratricopeptide repeats LG3211_3868 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins LG3211_3894 SM00650 Ribosomal RNA adenine dimethylases LG3211_3910 SM00382 ATPases associated with a variety of cellular activities LG3211_3912 SM00387 Histidine kinase-like ATPases LG3211_3912 SM00388 His Kinase A (phosphoacceptor) domain LG3211_3913 SM00448 cheY-homologous receiver domain LG3211_3913 SM00862 Transcriptional regulatory protein, C terminal LG3211_3924 SM00387 Histidine kinase-like ATPases LG3211_3926 SM00448 cheY-homologous receiver domain LG3211_3927 SM00387 Histidine kinase-like ATPases LG3211_3932 SM00260 Two component signalling adaptor domain LG3211_3934 SM00073 Histidine Phosphotransfer domain LG3211_3934 SM00260 Two component signalling adaptor domain LG3211_3934 SM00387 Histidine kinase-like ATPases LG3211_3934 SM00448 cheY-homologous receiver domain LG3211_3934 SM01231 LG3211_3934 LG3211_3935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LG3211_3936 SM00260 Two component signalling adaptor domain LG3211_3937 SM00448 cheY-homologous receiver domain LG3211_3938 SM00448 cheY-homologous receiver domain LG3211_3948 SM00491 LG3211_3948 LG3211_3955 SM00954 Region found in RelA / SpoT proteins LG3211_3959 SM00382 ATPases associated with a variety of cellular activities LG3211_3959 SM00487 DEAD-like helicases superfamily LG3211_3959 SM00490 helicase superfamily c-terminal domain LG3211_3959 SM00847 Helicase associated domain (HA2) Add an annotation LG3211_3964 SM00341 Helicase and RNase D C-terminal LG3211_3964 SM00487 DEAD-like helicases superfamily LG3211_3964 SM00490 helicase superfamily c-terminal domain LG3211_3964 SM00956 LG3211_3964 LG3211_3971 SM00448 cheY-homologous receiver domain LG3211_3971 SM00862 Transcriptional regulatory protein, C terminal LG3211_3972 SM00387 Histidine kinase-like ATPases LG3211_3972 SM00388 His Kinase A (phosphoacceptor) domain LG3211_3990 SM00382 ATPases associated with a variety of cellular activities LG3211_3994 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LG3211_4001 SM00560 LamG-like jellyroll fold domain LG3211_4006 SM00834 Putative regulatory protein LG3211_4007 SM00382 ATPases associated with a variety of cellular activities LG3211_4012 SM00342 helix_turn_helix, arabinose operon control protein LG3211_4012 SM00871 Bacterial transcription activator, effector binding domain LG3211_4014 SM00855 Phosphoglycerate mutase family LG3211_4028 SM00382 ATPases associated with a variety of cellular activities LG3211_4028 SM01086 C-terminal, D2-small domain, of ClpB protein LG3211_4041 SM00881 CoA binding domain LG3211_4044 SM00387 Histidine kinase-like ATPases LG3211_4044 SM00388 His Kinase A (phosphoacceptor) domain LG3211_4045 SM00382 ATPases associated with a variety of cellular activities LG3211_4045 SM00448 cheY-homologous receiver domain LG3211_4066 SM00957 SecA DEAD-like domain LG3211_4066 SM00958 SecA preprotein cross-linking domain LG3211_4071 SM00864 Tubulin/FtsZ family, GTPase domain LG3211_4071 SM00865 Tubulin/FtsZ family, C-terminal domain LG3211_4072 SM00842 Cell division protein FtsA LG3211_4106 SM00382 ATPases associated with a variety of cellular activities LG3211_4109 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family LG3211_4112 SM00849 Metallo-beta-lactamase superfamily LG3211_4126 SM00382 ATPases associated with a variety of cellular activities LG3211_4127 SM01211 LG3211_4127 LG3211_4138 SM00248 ankyrin repeats LG3211_4139 SM01060 LG3211_4139 LG3211_4147 SM00528 Domain in histone-like proteins of HNS family LG3211_4151 SM00382 ATPases associated with a variety of cellular activities LG3211_4161 SM00882 Coenzyme A transferase LG3211_4162 SM00882 Coenzyme A transferase LG3211_4166 SM00893 Electron transfer flavoprotein domain LG3211_4167 SM00893 Electron transfer flavoprotein domain LG3211_4187 SM00382 ATPases associated with a variety of cellular activities LG3211_4191 SM00116 Domain in cystathionine beta-synthase and other proteins. LG3211_4196 SM00382 ATPases associated with a variety of cellular activities LG3211_4201 SM00028 Tetratricopeptide repeats LG3211_4201 SM00220 Serine/Threonine protein kinases, catalytic domain LG3211_4210 SM00100 Cyclic nucleotide-monophosphate binding domain LG3211_4210 SM00419 helix_turn_helix, cAMP Regulatory protein LG3211_4221 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LG3211_4221 SM00387 Histidine kinase-like ATPases LG3211_4221 SM00388 His Kinase A (phosphoacceptor) domain LG3211_4222 SM00448 cheY-homologous receiver domain LG3211_4222 SM00862 Transcriptional regulatory protein, C terminal LG3211_4226 SM00046 Diacylglycerol kinase catalytic domain (presumed) LG3211_4229 SM00271 DnaJ molecular chaperone homology domain LG3211_4242 SM00347 helix_turn_helix multiple antibiotic resistance protein LG3211_4250 SM00861 Transketolase, pyrimidine binding domain LG3211_4251 SM00326 Src homology 3 domains LG3211_4257 SM00849 Metallo-beta-lactamase superfamily LG3211_4270 SM01207 LG3211_4270 LG3211_4271 SM01120 LG3211_4271 LG3211_4271 SM01121 LG3211_4271 LG3211_4274 SM00387 Histidine kinase-like ATPases LG3211_4275 SM00448 cheY-homologous receiver domain LG3211_4275 SM00862 Transcriptional regulatory protein, C terminal LG3211_4289 SM00382 ATPases associated with a variety of cellular activities LG3211_4291 SM00382 ATPases associated with a variety of cellular activities LG3211_4310 SM00644 LG3211_4310 LG3211_4315 SM00248 ankyrin repeats LG3211_4322 SM01350 LG3211_4322 LG3211_4327 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LG3211_4330 SM00450 Rhodanese Homology Domain LG3211_4331 SM00342 helix_turn_helix, arabinose operon control protein LG3211_4345 SM00344 helix_turn_helix ASNC type LG3211_4357 SM00098 Alkaline phosphatase homologues LG3211_4391 SM00823 Phosphopantetheine attachment site LG3211_4404 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LG3211_4419 SM00382 ATPases associated with a variety of cellular activities LG3211_4427 SM00344 helix_turn_helix ASNC type LG3211_4428 SM00342 helix_turn_helix, arabinose operon control protein LG3211_4429 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LG3211_4429 SM00245 tail specific protease LG3211_4430 SM00729 Elongator protein 3, MiaB family, Radical SAM LG3211_4434 SM00577 catalytic domain of ctd-like phosphatases LG3211_4438 SM00936 Penicillin-binding protein 5, C-terminal domain LG3211_4442 SM00342 helix_turn_helix, arabinose operon control protein LG3211_4445 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins LG3211_4447 SM00862 Transcriptional regulatory protein, C terminal LG3211_4456 SM00849 Metallo-beta-lactamase superfamily LG3211_4457 SM00477 DNA/RNA non-specific endonuclease LG3211_4457 SM00892 DNA/RNA non-specific endonuclease LG3211_4466 SM00641 Glycosyl hydrolases family 25 LG3211_4469 SM01263 LG3211_4469 LG3211_4471 SM00822 LG3211_4471 LG3211_4478 SM00382 ATPases associated with a variety of cellular activities LG3211_4478 SM01086 C-terminal, D2-small domain, of ClpB protein LG3211_4493 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LG3211_4499 SM00448 cheY-homologous receiver domain LG3211_4499 SM00850 LytTr DNA-binding domain LG3211_4509 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LG3211_4517 SM00450 Rhodanese Homology Domain LG3211_4521 SM00869 Autotransporter beta-domain LG3211_4522 SM00421 helix_turn_helix, Lux Regulon LG3211_4522 SM00448 cheY-homologous receiver domain LG3211_4523 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LG3211_4527 SM00382 ATPases associated with a variety of cellular activities LG3211_4538 SM00347 helix_turn_helix multiple antibiotic resistance protein LG3211_4544 SM00460 Transglutaminase/protease-like homologues LG3211_4546 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LG3211_4553 SM01130 LG3211_4553 LG3211_4558 SM00342 helix_turn_helix, arabinose operon control protein LG3211_4564 SM00776 LG3211_4564 LG3211_4570 SM01119 LG3211_4570 LG3211_4578 SM00028 Tetratricopeptide repeats LG3211_4594 SM00382 ATPases associated with a variety of cellular activities LG3211_4608 SM00345 helix_turn_helix gluconate operon transcriptional repressor LG3211_4609 SM00267 diguanylate cyclase LG3211_4624 SM00354 helix_turn _helix lactose operon repressor LG3211_4634 SM00984 UDP binding domain LG3211_4640 SM00829 Enoylreductase LG3211_4647 SM00028 Tetratricopeptide repeats LG3211_4647 SM00220 Serine/Threonine protein kinases, catalytic domain LG3211_4663 SM00090 RIO-like kinase LG3211_4668 SM00387 Histidine kinase-like ATPases LG3211_4673 SM00564 beta-propeller repeat LG3211_4682 SM00342 helix_turn_helix, arabinose operon control protein LG3211_4694 SM00382 ATPases associated with a variety of cellular activities LG3211_4694 SM00930 LG3211_4694 LG3211_4706 SM01260 LG3211_4706 LG3211_4710 SM00382 ATPases associated with a variety of cellular activities LG3211_4712 SM00382 ATPases associated with a variety of cellular activities LG3211_4716 SM00849 Metallo-beta-lactamase superfamily LG3211_4742 SM00387 Histidine kinase-like ATPases LG3211_4743 SM00448 cheY-homologous receiver domain LG3211_4743 SM00862 Transcriptional regulatory protein, C terminal LG3211_4756 SM00354 helix_turn _helix lactose operon repressor LG3211_4759 SM00354 helix_turn _helix lactose operon repressor LG3211_4770 SM00060 Fibronectin type 3 domain LG3211_4770 SM00495 Chitin-binding domain type 3 LG3211_4770 SM00636 LG3211_4770 LG3211_4782 SM00382 ATPases associated with a variety of cellular activities LG3211_4807 SM00758 LG3211_4807 LG3211_4808 SM00812 Alpha-L-fucosidase LG3211_4816 SM00448 cheY-homologous receiver domain LG3211_4816 SM00850 LytTr DNA-binding domain LG3211_4821 SM00752 Horizontally Transferred TransMembrane Domain LG3211_4825 SM00965 Secretin and TonB N terminus short domain LG3211_4827 SM00965 Secretin and TonB N terminus short domain LG3211_4841 SM00564 beta-propeller repeat LG3211_4848 SM00869 Autotransporter beta-domain LG3211_4849 SM00564 beta-propeller repeat LG3211_4861 SM00254 ShK toxin domain LG3211_4893 SM00470 ParB-like nuclease domain LG3211_4898 SM00885 D5 N terminal like LG3211_4910 SM00857 Resolvase, N terminal domain LG3211_4911 SM00530 Helix-turn-helix XRE-family like proteins LG3211_4917 SM00354 helix_turn _helix lactose operon repressor LG3211_4939 SM00257 Lysin motif LG3211_4944 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain LG3211_4944 SM00437 Bacterial DNA topoisomerase I DNA-binding domain LG3211_4944 SM00493 LG3211_4944 LG3211_4959 SM00487 DEAD-like helicases superfamily LG3211_4959 SM00490 helicase superfamily c-terminal domain LG3211_4971 SM00345 helix_turn_helix gluconate operon transcriptional repressor LG3211_4973 SM00849 Metallo-beta-lactamase superfamily LG3211_4975 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LG3211_4977 SM00530 Helix-turn-helix XRE-family like proteins LG3211_4980 SM00448 cheY-homologous receiver domain LG3211_4980 SM00862 Transcriptional regulatory protein, C terminal LG3211_4981 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LG3211_4981 SM00387 Histidine kinase-like ATPases LG3211_4981 SM00388 His Kinase A (phosphoacceptor) domain LG3211_4985 SM00823 Phosphopantetheine attachment site LG3211_4985 SM00824 Thioesterase LG3211_4990 SM00448 cheY-homologous receiver domain LG3211_4990 SM00862 Transcriptional regulatory protein, C terminal LG3211_4991 SM00387 Histidine kinase-like ATPases LG3211_4991 SM00388 His Kinase A (phosphoacceptor) domain LG3211_5003 SM00530 Helix-turn-helix XRE-family like proteins LG3211_5004 SM00986 Uracil DNA glycosylase superfamily LG3211_5004 SM00987 UreE urease accessory protein, C-terminal domain LG3211_5005 SM00448 cheY-homologous receiver domain LG3211_5007 SM00382 ATPases associated with a variety of cellular activities LG3211_5009 SM00487 DEAD-like helicases superfamily LG3211_5009 SM00490 helicase superfamily c-terminal domain LG3211_5011 SM00357 Cold shock protein domain LG3211_5011 SM00382 ATPases associated with a variety of cellular activities LG3211_5011 SM00959 Rho termination factor, N-terminal domain LG3211_5016 SM00248 ankyrin repeats LG3211_5028 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs LG3211_5028 SM00474 3'-5' exonuclease LG3211_5028 SM00475 5'-3' exonuclease LG3211_5028 SM00482 DNA polymerase A domain LG3211_5043 SM01360 LG3211_5043 LG3211_5045 SM00530 Helix-turn-helix XRE-family like proteins LG3211_5049 SM00825 Beta-ketoacyl synthase LG3211_5054 SM00822 LG3211_5054 LG3211_5062 SM01294 LG3211_5062 LG3211_5069 SM00382 ATPases associated with a variety of cellular activities LG3211_5077 SM00382 ATPases associated with a variety of cellular activities LG3211_5078 SM01004 Delta-aminolevulinic acid dehydratase LG3211_5110 SM00470 ParB-like nuclease domain LG3211_5113 SM00822 LG3211_5113 LG3211_5115 SM01259 LG3211_5115 LG3211_5122 SM00387 Histidine kinase-like ATPases LG3211_5122 SM00388 His Kinase A (phosphoacceptor) domain LG3211_5122 SM00448 cheY-homologous receiver domain LG3211_5126 SM00421 helix_turn_helix, Lux Regulon LG3211_5126 SM00448 cheY-homologous receiver domain LG3211_5132 SM00986 Uracil DNA glycosylase superfamily LG3211_5132 SM00987 UreE urease accessory protein, C-terminal domain LG3211_5136 SM00382 ATPases associated with a variety of cellular activities LG3211_5144 SM00880 LG3211_5144 LG3211_5145 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain LG3211_5145 SM01232 LG3211_5145 LG3211_5148 SM00028 Tetratricopeptide repeats LG3211_5148 SM00220 Serine/Threonine protein kinases, catalytic domain LG3211_5159 SM00836 DALR anticodon binding domain LG3211_5181 SM00563 Phosphate acyltransferases LG3211_5184 SM00972 Spore Coat Protein U domain LG3211_5187 SM00972 Spore Coat Protein U domain LG3211_5190 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LG3211_5198 SM00671 Sel1-like repeats. LG3211_5199 SM00671 Sel1-like repeats. LG3211_5206 SM00487 DEAD-like helicases superfamily LG3211_5206 SM00490 helicase superfamily c-terminal domain LG3211_5221 SM00267 diguanylate cyclase LG3211_5227 SM00729 Elongator protein 3, MiaB family, Radical SAM LG3211_5227 SM00876 Biotin and Thiamin Synthesis associated domain LG3211_5242 SM00213 Ubiquitin homologues LG3211_5244 SM00342 helix_turn_helix, arabinose operon control protein LG3211_5245 SM00822 LG3211_5245 LG3211_5249 SM00823 Phosphopantetheine attachment site LG3211_5249 SM00824 Thioesterase LG3211_5270 SM00710 Parallel beta-helix repeats LG3211_5273 SM00849 Metallo-beta-lactamase superfamily LG3211_5288 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain LG3211_5291 SM01260 LG3211_5291 LG3211_5294 SM00028 Tetratricopeptide repeats LG3211_5294 SM00091 PAS domain LG3211_5299 SM00448 cheY-homologous receiver domain LG3211_5299 SM00850 LytTr DNA-binding domain LG3211_5316 SM00411 bacterial (prokaryotic) histone like domain LG3211_5333 SM00257 Lysin motif LG3211_5340 SM01329 LG3211_5340 LG3211_5353 SM00387 Histidine kinase-like ATPases LG3211_5353 SM00388 His Kinase A (phosphoacceptor) domain LG3211_5353 SM00448 cheY-homologous receiver domain LG3211_5355 SM00487 DEAD-like helicases superfamily LG3211_5355 SM00490 helicase superfamily c-terminal domain LG3211_5355 SM00847 Helicase associated domain (HA2) Add an annotation LG3211_5362 SM00382 ATPases associated with a variety of cellular activities LG3211_5366 SM00382 ATPases associated with a variety of cellular activities