locus-tag class description HV561_00005 PF11638 DnaA N-terminal domain HV561_00005 PF08299 Bacterial dnaA protein helix-turn-helix HV561_00005 PF00308 Bacterial dnaA protein HV561_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HV561_00010 PF02767 DNA polymerase III beta subunit, central domain HV561_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HV561_00020 PF09976 Tetratricopeptide repeat-like domain HV561_00025 PF13393 Histidyl-tRNA synthetase HV561_00025 PF03129 Anticodon binding domain HV561_00030 PF04551 GcpE protein HV561_00035 PF13464 Domain of unknown function (DUF4115) HV561_00040 PF00206 Lyase HV561_00040 PF14698 Argininosuccinate lyase C-terminal HV561_00050 PF04400 (Na+)-NQR maturation NqrM HV561_00055 PF02424 ApbE family HV561_00060 PF00111 2Fe-2S iron-sulfur cluster binding domain HV561_00060 PF00970 Oxidoreductase FAD-binding domain HV561_00060 PF00175 Oxidoreductase NAD-binding domain HV561_00065 PF02508 Rnf-Nqr subunit, membrane protein HV561_00070 PF02508 Rnf-Nqr subunit, membrane protein HV561_00075 PF04205 FMN-binding domain HV561_00080 PF03116 NQR2, RnfD, RnfE family HV561_00085 PF11973 NQRA C-terminal domain HV561_00085 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HV561_00090 PF01106 NifU-like domain HV561_00090 PF01521 Iron-sulphur cluster biosynthesis HV561_00095 PF00860 Permease family HV561_00100 PF00117 Glutamine amidotransferase class-I HV561_00100 PF06418 CTP synthase N-terminus HV561_00110 PF03466 LysR substrate binding domain HV561_00110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HV561_00115 PF13419 Haloacid dehalogenase-like hydrolase HV561_00120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HV561_00120 PF03466 LysR substrate binding domain HV561_00125 PF03193 RsgA GTPase HV561_00130 PF01351 Ribonuclease HII HV561_00135 PF01230 HIT domain HV561_00145 PF00216 Bacterial DNA-binding protein HV561_00150 PF04222 Protein of unknown function (DUF416) HV561_00155 PF01208 Uroporphyrinogen decarboxylase (URO-D) HV561_00160 PF03695 Uncharacterised protein family (UPF0149) HV561_00165 PF05164 Cell division protein ZapA HV561_00175 PF01812 5-formyltetrahydrofolate cyclo-ligase family HV561_00180 PF09339 IclR helix-turn-helix domain HV561_00180 PF01614 Bacterial transcriptional regulator HV561_00185 PF00474 Sodium:solute symporter family HV561_00190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HV561_00195 PF04348 LppC putative lipoprotein HV561_00200 PF02021 Uncharacterised protein family UPF0102 HV561_00205 PF13580 SIS domain HV561_00210 PF04972 BON domain HV561_00215 PF01546 Peptidase family M20/M25/M40 HV561_00215 PF07687 Peptidase dimerisation domain HV561_00225 PF04381 Putative exonuclease, RdgC HV561_00230 PF14748 Pyrroline-5-carboxylate reductase dimerisation HV561_00230 PF03807 NADP oxidoreductase coenzyme F420-dependent HV561_00235 PF12832 MFS_1 like family HV561_00240 PF00313 'Cold-shock' DNA-binding domain HV561_00245 PF04352 ProQ/FINO family HV561_00250 PF11818 C-terminal domain of tail specific protease (DUF3340) HV561_00250 PF00595 PDZ domain HV561_00250 PF03572 Peptidase family S41 HV561_00250 PF17804 Tail specific protease N-terminal domain HV561_00255 PF03734 L,D-transpeptidase catalytic domain HV561_00260 PF05951 Bacterial protein of unknown function (DUF882) HV561_00265 PF00753 Metallo-beta-lactamase superfamily HV561_00270 PF00303 Thymidylate synthase HV561_00295 PF00497 Bacterial extracellular solute-binding proteins, family 3 HV561_00295 PF01464 Transglycosylase SLT domain HV561_00305 PF00486 Transcriptional regulatory protein, C terminal HV561_00305 PF00072 Response regulator receiver domain HV561_00310 PF00149 Calcineurin-like phosphoesterase HV561_00315 PF13521 AAA domain HV561_00315 PF01467 Cytidylyltransferase-like HV561_00320 PF01687 Riboflavin kinase HV561_00320 PF06574 FAD synthetase HV561_00325 PF08264 Anticodon-binding domain of tRNA HV561_00325 PF00133 tRNA synthetases class I (I, L, M and V) HV561_00325 PF06827 Zinc finger found in FPG and IleRS HV561_00330 PF13091 PLD-like domain HV561_00335 PF00588 SpoU rRNA Methylase family HV561_00335 PF08032 RNA 2'-O ribose methyltransferase substrate binding HV561_00345 PF02342 TerD domain HV561_00360 PF03741 Integral membrane protein TerC family HV561_00370 PF00005 ABC transporter HV561_00370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HV561_00375 PF12911 N-terminal TM domain of oligopeptide transport permease C HV561_00375 PF00528 Binding-protein-dependent transport system inner membrane component HV561_00380 PF00528 Binding-protein-dependent transport system inner membrane component HV561_00385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HV561_00395 PF16658 Class II release factor RF3, C-terminal domain HV561_00395 PF03144 Elongation factor Tu domain 2 HV561_00395 PF00009 Elongation factor Tu GTP binding domain HV561_00405 PF00768 D-alanyl-D-alanine carboxypeptidase HV561_00410 PF01195 Peptidyl-tRNA hydrolase HV561_00415 PF06071 Protein of unknown function (DUF933) HV561_00415 PF01926 50S ribosome-binding GTPase HV561_00425 PF02652 L-lactate permease HV561_00430 PF02754 Cysteine-rich domain HV561_00435 PF11870 Domain of unknown function (DUF3390) HV561_00435 PF13183 4Fe-4S dicluster domain HV561_00435 PF02589 LUD domain HV561_00440 PF02589 LUD domain HV561_00445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HV561_00445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HV561_00450 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HV561_00455 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HV561_00455 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HV561_00455 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HV561_00455 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HV561_00460 PF00585 C-terminal regulatory domain of Threonine dehydratase HV561_00460 PF00291 Pyridoxal-phosphate dependent enzyme HV561_00465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HV561_00475 PF18389 TrmO C-terminal domain HV561_00475 PF01980 tRNA-methyltransferase O HV561_00480 PF01040 UbiA prenyltransferase family HV561_00490 PF04546 Sigma-70, non-essential region HV561_00490 PF04545 Sigma-70, region 4 HV561_00490 PF04539 Sigma-70 region 3 HV561_00490 PF04542 Sigma-70 region 2 HV561_00490 PF00140 Sigma-70 factor, region 1.2 HV561_00490 PF03979 Sigma-70 factor, region 1.1 HV561_00495 PF08278 DNA primase DnaG DnaB-binding HV561_00495 PF08275 DNA primase catalytic core, N-terminal domain HV561_00495 PF01807 CHC2 zinc finger HV561_00495 PF10410 DnaB-helicase binding domain of primase HV561_00500 PF01165 Ribosomal protein S21 HV561_00505 PF04932 O-Antigen ligase HV561_00510 PF16363 GDP-mannose 4,6 dehydratase HV561_00515 PF01521 Iron-sulphur cluster biosynthesis HV561_00520 PF01809 Putative membrane protein insertion efficiency factor HV561_00525 PF00825 Ribonuclease P HV561_00530 PF00468 Ribosomal protein L34 HV561_00535 PF00762 Ferrochelatase HV561_00540 PF04607 Region found in RelA / SpoT proteins HV561_00540 PF13291 ACT domain HV561_00540 PF02824 TGS domain HV561_00545 PF01192 RNA polymerase Rpb6 HV561_00550 PF00356 Bacterial regulatory proteins, lacI family HV561_00550 PF13407 Periplasmic binding protein domain HV561_00555 PF00251 Glycosyl hydrolases family 32 N-terminal domain HV561_00555 PF08244 Glycosyl hydrolases family 32 C terminal HV561_00560 PF00294 pfkB family carbohydrate kinase HV561_00565 PF04055 Radical SAM superfamily HV561_00565 PF00919 Uncharacterized protein family UPF0004 HV561_00565 PF01938 TRAM domain HV561_00570 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HV561_00575 PF00391 PEP-utilising enzyme, mobile domain HV561_00575 PF05524 PEP-utilising enzyme, N-terminal HV561_00575 PF02896 PEP-utilising enzyme, TIM barrel domain HV561_00580 PF00381 PTS HPr component phosphorylation site HV561_00585 PF00528 Binding-protein-dependent transport system inner membrane component HV561_00590 PF00005 ABC transporter HV561_00595 PF02378 Phosphotransferase system, EIIC HV561_00595 PF00367 phosphotransferase system, EIIB HV561_00600 PF00557 Metallopeptidase family M24 HV561_00605 PF02592 Putative vitamin uptake transporter HV561_00610 PF17954 Quercetinase C-terminal cupin domain HV561_00610 PF02678 Pirin HV561_00615 PF00490 Delta-aminolevulinic acid dehydratase HV561_00620 PF00902 Sec-independent protein translocase protein (TatC) HV561_00630 PF02416 mttA/Hcf106 family HV561_00635 PF03109 ABC1 family HV561_00645 PF01209 ubiE/COQ5 methyltransferase family HV561_00650 PF01544 CorA-like Mg2+ transporter protein HV561_00655 PF13687 Domain of unknown function (DUF4153) HV561_00660 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HV561_00660 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HV561_00665 PF02567 Phenazine biosynthesis-like protein HV561_00670 PF03605 Anaerobic c4-dicarboxylate membrane transporter HV561_00675 PF00156 Phosphoribosyl transferase domain HV561_00685 PF00892 EamA-like transporter family HV561_00690 PF01016 Ribosomal L27 protein HV561_00695 PF00829 Ribosomal prokaryotic L21 protein HV561_00700 PF00348 Polyprenyl synthetase HV561_00705 PF02677 Epoxyqueuosine reductase QueH HV561_00710 PF00698 Acyl transferase domain HV561_00725 PF05525 Branched-chain amino acid transport protein HV561_00730 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HV561_00730 PF06827 Zinc finger found in FPG and IleRS HV561_00730 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HV561_00740 PF02580 D-Tyr-tRNA(Tyr) deacylase HV561_00745 PF03631 Virulence factor BrkB HV561_00750 PF00171 Aldehyde dehydrogenase family HV561_00755 PF01119 DNA mismatch repair protein, C-terminal domain HV561_00755 PF08676 MutL C terminal dimerisation domain HV561_00760 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HV561_00765 PF04221 RelB antitoxin HV561_00775 PF17209 Hfq protein HV561_00780 PF01926 50S ribosome-binding GTPase HV561_00780 PF13167 GTP-binding GTPase N-terminal HV561_00780 PF16360 GTP-binding GTPase Middle Region HV561_00785 PF00529 HlyD membrane-fusion protein of T1SS HV561_00785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HV561_00790 PF00664 ABC transporter transmembrane region HV561_00790 PF00005 ABC transporter HV561_00805 PF08011 PD-(D/E)XK nuclease superfamily HV561_00805 PF09820 Predicted AAA-ATPase HV561_00820 PF08011 PD-(D/E)XK nuclease superfamily HV561_00820 PF09820 Predicted AAA-ATPase HV561_00830 PF00149 Calcineurin-like phosphoesterase HV561_00835 PF01648 4'-phosphopantetheinyl transferase superfamily HV561_00840 PF06965 Na+/H+ antiporter 1 HV561_00845 PF03264 NapC/NirT cytochrome c family, N-terminal region HV561_00850 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HV561_00855 PF12837 4Fe-4S binding domain HV561_00855 PF12801 4Fe-4S binding domain HV561_00860 PF12800 4Fe-4S binding domain HV561_00860 PF12838 4Fe-4S dicluster domain HV561_00865 PF01568 Molydopterin dinucleotide binding domain HV561_00865 PF00384 Molybdopterin oxidoreductase HV561_00865 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HV561_00865 PF10518 TAT (twin-arginine translocation) pathway signal sequence HV561_00870 PF03927 NapD protein HV561_00880 PF02525 Flavodoxin-like fold HV561_00885 PF00282 Pyridoxal-dependent decarboxylase conserved domain HV561_00890 PF01850 PIN domain HV561_00895 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin HV561_00900 PF00202 Aminotransferase class-III HV561_00905 PF00471 Ribosomal protein L33 HV561_00910 PF00830 Ribosomal L28 family HV561_00915 PF04002 RadC-like JAB domain HV561_00920 PF04127 DNA / pantothenate metabolism flavoprotein HV561_00920 PF02441 Flavoprotein HV561_00925 PF00692 dUTPase HV561_00930 PF00440 Bacterial regulatory proteins, tetR family HV561_00935 PF06794 Uncharacterised protein family (UPF0270) HV561_00940 PF00027 Cyclic nucleotide-binding domain HV561_00940 PF13545 Crp-like helix-turn-helix domain HV561_00945 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HV561_00945 PF01565 FAD binding domain HV561_00950 PF08279 HTH domain HV561_00950 PF03099 Biotin/lipoate A/B protein ligase family HV561_00950 PF02237 Biotin protein ligase C terminal domain HV561_00975 PF00155 Aminotransferase class I and II HV561_00975 PF00392 Bacterial regulatory proteins, gntR family HV561_00980 PF01680 SOR/SNZ family HV561_00985 PF01174 SNO glutamine amidotransferase family HV561_00990 PF00923 Transaldolase/Fructose-6-phosphate aldolase HV561_01000 PF01979 Amidohydrolase family HV561_01005 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HV561_01010 PF00588 SpoU rRNA Methylase family HV561_01015 PF01170 Putative RNA methylase family UPF0020 HV561_01015 PF02926 THUMP domain HV561_01015 PF10672 S-adenosylmethionine-dependent methyltransferase HV561_01020 PF00072 Response regulator receiver domain HV561_01020 PF00196 Bacterial regulatory proteins, luxR family HV561_01025 PF00356 Bacterial regulatory proteins, lacI family HV561_01030 PF00294 pfkB family carbohydrate kinase HV561_01035 PF13407 Periplasmic binding protein domain HV561_01040 PF02653 Branched-chain amino acid transport system / permease component HV561_01045 PF00005 ABC transporter HV561_01050 PF05025 RbsD / FucU transport protein family HV561_01055 PF00037 4Fe-4S binding domain HV561_01060 PF01571 Aminomethyltransferase folate-binding domain HV561_01065 PF08340 Domain of unknown function (DUF1732) HV561_01065 PF03755 YicC-like family, N-terminal region HV561_01070 PF01138 3' exoribonuclease family, domain 1 HV561_01070 PF03725 3' exoribonuclease family, domain 2 HV561_01105 PF00749 tRNA synthetases class I (E and Q), catalytic domain HV561_01115 PF02463 RecF/RecN/SMC N terminal domain HV561_01120 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HV561_01125 PF12327 FtsZ family, C-terminal domain HV561_01125 PF00091 Tubulin/FtsZ family, GTPase domain HV561_01130 PF02491 SHS2 domain inserted in FTSA HV561_01135 PF03799 Cell division protein FtsQ HV561_01135 PF08478 POTRA domain, FtsQ-type HV561_01140 PF07478 D-ala D-ala ligase C-terminus HV561_01140 PF01820 D-ala D-ala ligase N-terminus HV561_01145 PF01225 Mur ligase family, catalytic domain HV561_01145 PF08245 Mur ligase middle domain HV561_01145 PF02875 Mur ligase family, glutamate ligase domain HV561_01150 PF04101 Glycosyltransferase family 28 C-terminal domain HV561_01150 PF03033 Glycosyltransferase family 28 N-terminal domain HV561_01155 PF01098 Cell cycle protein HV561_01160 PF08245 Mur ligase middle domain HV561_01160 PF02875 Mur ligase family, glutamate ligase domain HV561_01165 PF00953 Glycosyl transferase family 4 HV561_01165 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HV561_01170 PF02875 Mur ligase family, glutamate ligase domain HV561_01170 PF01225 Mur ligase family, catalytic domain HV561_01170 PF08245 Mur ligase middle domain HV561_01175 PF02875 Mur ligase family, glutamate ligase domain HV561_01175 PF01225 Mur ligase family, catalytic domain HV561_01175 PF08245 Mur ligase middle domain HV561_01180 PF00905 Penicillin binding protein transpeptidase domain HV561_01180 PF03717 Penicillin-binding Protein dimerisation domain HV561_01185 PF04999 Cell division protein FtsL HV561_01190 PF01795 MraW methylase family HV561_01195 PF02381 MraZ protein, putative antitoxin-like HV561_01205 PF00773 RNB domain HV561_01205 PF00575 S1 RNA binding domain HV561_01205 PF17876 Cold shock domain HV561_01205 PF08206 Ribonuclease B OB domain HV561_01205 PF08461 Ribonuclease R winged-helix domain HV561_01210 PF03831 PhnA domain HV561_01210 PF08274 PhnA Zinc-Ribbon HV561_01215 PF03895 YadA-like membrane anchor domain HV561_01215 PF05658 Head domain of trimeric autotransporter adhesin HV561_01215 PF05662 Coiled stalk of trimeric autotransporter adhesin HV561_01220 PF01297 Zinc-uptake complex component A periplasmic HV561_01225 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HV561_01230 PF02311 AraC-like ligand binding domain HV561_01230 PF12833 Helix-turn-helix domain HV561_01240 PF00575 S1 RNA binding domain HV561_01240 PF10150 Ribonuclease E/G family HV561_01240 PF12111 Polyribonucleotide phosphorylase C terminal HV561_01250 PF01476 LysM domain HV561_01255 PF04364 DNA polymerase III chi subunit, HolC HV561_01260 PF13673 Acetyltransferase (GNAT) domain HV561_01275 PF06414 Zeta toxin HV561_01280 PF12728 Helix-turn-helix domain HV561_01280 PF02661 Fic/DOC family HV561_01290 PF08264 Anticodon-binding domain of tRNA HV561_01290 PF10458 Valyl tRNA synthetase tRNA binding arm HV561_01290 PF00133 tRNA synthetases class I (I, L, M and V) HV561_01300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HV561_01300 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HV561_01305 PF01177 Asp/Glu/Hydantoin racemase HV561_01315 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HV561_01320 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HV561_01320 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HV561_01325 PF00459 Inositol monophosphatase family HV561_01330 PF00293 NUDIX domain HV561_01335 PF01479 S4 domain HV561_01340 PF01430 Hsp33 protein HV561_01345 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HV561_01345 PF01502 Phosphoribosyl-AMP cyclohydrolase HV561_01350 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HV561_01350 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HV561_01355 PF00977 Histidine biosynthesis protein HV561_01360 PF00977 Histidine biosynthesis protein HV561_01365 PF00117 Glutamine amidotransferase class-I HV561_01375 PF00475 Imidazoleglycerol-phosphate dehydratase HV561_01380 PF00155 Aminotransferase class I and II HV561_01390 PF08468 Methyltransferase small domain N-terminal HV561_01390 PF05175 Methyltransferase small domain HV561_01395 PF03603 DNA polymerase III psi subunit HV561_01400 PF00583 Acetyltransferase (GNAT) family HV561_01405 PF03144 Elongation factor Tu domain 2 HV561_01405 PF00009 Elongation factor Tu GTP binding domain HV561_01405 PF00679 Elongation factor G C-terminus HV561_01410 PF01168 Alanine racemase, N-terminal domain HV561_01425 PF00140 Sigma-70 factor, region 1.2 HV561_01425 PF04545 Sigma-70, region 4 HV561_01425 PF04542 Sigma-70 region 2 HV561_01445 PF03406 Phage tail fibre repeat HV561_01540 PF05069 Phage virion morphogenesis family HV561_01560 PF03237 Terminase-like family HV561_01565 PF11985 Protein of unknown function (DUF3486) HV561_01570 PF08461 Ribonuclease R winged-helix domain HV561_01575 PF10805 Protein of unknown function (DUF2730) HV561_01610 PF08765 Mor transcription activator family HV561_01620 PF06252 Protein of unknown function (DUF1018) HV561_01645 PF07352 Bacteriophage Mu Gam like protein HV561_01665 PF13401 AAA domain HV561_01665 PF09077 Mu B transposition protein, C terminal HV561_01670 PF09039 Mu DNA binding, I gamma subdomain HV561_01670 PF02316 Mu DNA-binding domain HV561_01670 PF02914 Bacteriophage Mu transposase HV561_01670 PF09299 Mu transposase, C-terminal HV561_01675 PF13693 Winged helix-turn-helix DNA-binding HV561_01765 PF00132 Bacterial transferase hexapeptide (six repeats) HV561_01765 PF06426 Serine acetyltransferase, N-terminal HV561_01770 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HV561_01770 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HV561_01775 PF02556 Preprotein translocase subunit SecB HV561_01780 PF00581 Rhodanese-like domain HV561_01785 PF05697 Bacterial trigger factor protein (TF) HV561_01785 PF05698 Bacterial trigger factor protein (TF) C-terminus HV561_01785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HV561_01790 PF00009 Elongation factor Tu GTP binding domain HV561_01790 PF03144 Elongation factor Tu domain 2 HV561_01790 PF03143 Elongation factor Tu C-terminal domain HV561_01795 PF03144 Elongation factor Tu domain 2 HV561_01795 PF00009 Elongation factor Tu GTP binding domain HV561_01795 PF03764 Elongation factor G, domain IV HV561_01795 PF14492 Elongation Factor G, domain II HV561_01795 PF00679 Elongation factor G C-terminus HV561_01800 PF00177 Ribosomal protein S7p/S5e HV561_01805 PF00164 Ribosomal protein S12/S23 HV561_01810 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HV561_01815 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HV561_01825 PF08525 Opacity-associated protein A N-terminal motif HV561_01825 PF04225 Opacity-associated protein A LysM-like domain HV561_01835 PF02666 Phosphatidylserine decarboxylase HV561_01840 PF00589 Phage integrase family HV561_01840 PF02899 Phage integrase, N-terminal SAM-like domain HV561_01845 PF02655 ATP-grasp domain HV561_01845 PF18419 ATP-grasp-like domain HV561_01845 PF04262 Glutamate-cysteine ligase HV561_01850 PF03610 PTS system fructose IIA component HV561_01850 PF03830 PTS system sorbose subfamily IIB component HV561_01855 PF03609 PTS system sorbose-specific iic component HV561_01860 PF03613 PTS system mannose/fructose/sorbose family IID component HV561_01865 PF06173 Protein of unknown function (DUF986) HV561_01870 PF00121 Triosephosphate isomerase HV561_01875 PF02395 Immunoglobulin A1 protease HV561_01875 PF03797 Autotransporter beta-domain HV561_01875 PF02395 Immunoglobulin A1 protease HV561_01875 PF03797 Autotransporter beta-domain HV561_01875 PF03212 Pertactin HV561_01875 PF03212 Pertactin HV561_01880 PF01142 tRNA pseudouridine synthase D (TruD) HV561_01885 PF01975 Survival protein SurE HV561_01890 PF09335 SNARE associated Golgi protein HV561_01905 PF01476 LysM domain HV561_01905 PF01551 Peptidase family M23 HV561_01910 PF03352 Methyladenine glycosylase HV561_01915 PF00550 Phosphopantetheine attachment site HV561_01920 PF00834 Ribulose-phosphate 3 epimerase family HV561_01925 PF01197 Ribosomal protein L31 HV561_01930 PF00444 Ribosomal protein L36 HV561_01935 PF00497 Bacterial extracellular solute-binding proteins, family 3 HV561_01940 PF00528 Binding-protein-dependent transport system inner membrane component HV561_01945 PF00005 ABC transporter HV561_01950 PF02325 YGGT family HV561_01955 PF04320 Protein with unknown function (DUF469) HV561_01960 PF02390 Putative methyltransferase HV561_01965 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HV561_01965 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HV561_01970 PF01263 Aldose 1-epimerase HV561_01975 PF02395 Immunoglobulin A1 protease HV561_01975 PF03212 Pertactin HV561_01980 PF12804 MobA-like NTP transferase domain HV561_01985 PF06288 Protein of unknown function (DUF1040) HV561_01990 PF01323 DSBA-like thioredoxin domain HV561_01995 PF00270 DEAD/DEAH box helicase HV561_01995 PF00271 Helicase conserved C-terminal domain HV561_02000 PF00462 Glutaredoxin HV561_02010 PF00209 Sodium:neurotransmitter symporter family HV561_02015 PF03471 Transporter associated domain HV561_02015 PF00571 CBS domain HV561_02015 PF01595 Cyclin M transmembrane N-terminal domain HV561_02020 PF01578 Cytochrome C assembly protein HV561_02025 PF02620 Large ribosomal RNA subunit accumulation protein YceD HV561_02030 PF01783 Ribosomal L32p protein family HV561_02035 PF02504 Fatty acid synthesis protein HV561_02040 PF00815 Histidinol dehydrogenase HV561_02045 PF01634 ATP phosphoribosyltransferase HV561_02045 PF08029 HisG, C-terminal domain HV561_02050 PF01259 SAICAR synthetase HV561_02055 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HV561_02055 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HV561_02060 PF04403 Paraquat-inducible protein A HV561_02065 PF02142 MGS-like domain HV561_02070 PF00291 Pyridoxal-phosphate dependent enzyme HV561_02070 PF14821 Threonine synthase N terminus HV561_02075 PF03466 LysR substrate binding domain HV561_02075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HV561_02080 PF00440 Bacterial regulatory proteins, tetR family HV561_02090 PF05658 Head domain of trimeric autotransporter adhesin HV561_02090 PF03895 YadA-like membrane anchor domain HV561_02090 PF13018 Extended Signal Peptide of Type V secretion system HV561_02090 PF05662 Coiled stalk of trimeric autotransporter adhesin HV561_02090 PF03895 YadA-like membrane anchor domain HV561_02090 PF05658 Head domain of trimeric autotransporter adhesin HV561_02090 PF05662 Coiled stalk of trimeric autotransporter adhesin HV561_02090 PF13018 Extended Signal Peptide of Type V secretion system HV561_02095 PF01225 Mur ligase family, catalytic domain HV561_02095 PF02875 Mur ligase family, glutamate ligase domain HV561_02095 PF08245 Mur ligase middle domain HV561_02100 PF04333 MlaA lipoprotein HV561_02105 PF01340 Met Apo-repressor, MetJ HV561_02110 PF06196 Protein of unknown function (DUF997) HV561_02115 PF00474 Sodium:solute symporter family HV561_02120 PF00543 Nitrogen regulatory protein P-II HV561_02125 PF00012 Hsp70 protein HV561_02130 PF09827 CRISPR associated protein Cas2 HV561_02140 PF01556 DnaJ C terminal domain HV561_02140 PF00684 DnaJ central domain HV561_02140 PF00226 DnaJ domain HV561_02145 PF00199 Catalase HV561_02145 PF06628 Catalase-related immune-responsive HV561_02150 PF00999 Sodium/hydrogen exchanger family HV561_02155 PF01546 Peptidase family M20/M25/M40 HV561_02155 PF07687 Peptidase dimerisation domain HV561_02160 PF03960 ArsC family HV561_02165 PF00809 Pterin binding enzyme HV561_02170 PF00849 RNA pseudouridylate synthase HV561_02170 PF01479 S4 domain HV561_02175 PF00924 Mechanosensitive ion channel HV561_02175 PF05552 Conserved TM helix HV561_02180 PF03737 Aldolase/RraA HV561_02185 PF05175 Methyltransferase small domain HV561_02190 PF00210 Ferritin-like domain HV561_02195 PF00912 Transglycosylase HV561_02195 PF00905 Penicillin binding protein transpeptidase domain HV561_02195 PF14814 Bifunctional transglycosylase second domain HV561_02200 PF00378 Enoyl-CoA hydratase/isomerase HV561_02205 PF03358 NADPH-dependent FMN reductase HV561_02210 PF00293 NUDIX domain HV561_02215 PF01925 Sulfite exporter TauE/SafE HV561_02220 PF01790 Prolipoprotein diacylglyceryl transferase HV561_02225 PF13419 Haloacid dehalogenase-like hydrolase HV561_02230 PF00579 tRNA synthetases class I (W and Y) HV561_02235 PF01435 Peptidase family M48 HV561_02240 PF00719 Inorganic pyrophosphatase HV561_02260 PF02618 YceG-like family HV561_02265 PF02223 Thymidylate kinase HV561_02270 PF09115 DNA polymerase III, delta subunit, C terminal HV561_02275 PF01026 TatD related DNase HV561_02280 PF07509 Protein of unknown function (DUF1523) HV561_02285 PF00149 Calcineurin-like phosphoesterase HV561_02315 PF01068 ATP dependent DNA ligase domain HV561_02315 PF14743 DNA ligase OB-like domain HV561_02320 PF00579 tRNA synthetases class I (W and Y) HV561_02320 PF01479 S4 domain HV561_02325 PF05433 Glycine zipper 2TM domain HV561_02330 PF06185 YecM protein HV561_02335 PF00750 tRNA synthetases class I (R) HV561_02335 PF05746 DALR anticodon binding domain HV561_02335 PF03485 Arginyl tRNA synthetase N terminal domain HV561_02340 PF01926 50S ribosome-binding GTPase HV561_02340 PF01018 GTP1/OBG HV561_02345 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) HV561_02350 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HV561_02350 PF01578 Cytochrome C assembly protein HV561_02355 PF03100 CcmE HV561_02360 PF04995 Heme exporter protein D (CcmD) HV561_02365 PF01578 Cytochrome C assembly protein HV561_02370 PF03379 CcmB protein HV561_02375 PF00005 ABC transporter HV561_02380 PF00308 Bacterial dnaA protein HV561_02385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HV561_02390 PF00528 Binding-protein-dependent transport system inner membrane component HV561_02395 PF12911 N-terminal TM domain of oligopeptide transport permease C HV561_02395 PF00528 Binding-protein-dependent transport system inner membrane component HV561_02400 PF00005 ABC transporter HV561_02400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HV561_02405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HV561_02405 PF00005 ABC transporter HV561_02415 PF02684 Lipid-A-disaccharide synthetase HV561_02420 PF01343 Peptidase family S49 HV561_02420 PF08496 Peptidase family S49 N-terminal HV561_02425 PF03895 YadA-like membrane anchor domain HV561_02425 PF05658 Head domain of trimeric autotransporter adhesin HV561_02425 PF05662 Coiled stalk of trimeric autotransporter adhesin HV561_02430 PF00893 Small Multidrug Resistance protein HV561_02435 PF01678 Diaminopimelate epimerase HV561_02440 PF03605 Anaerobic c4-dicarboxylate membrane transporter HV561_02450 PF03412 Peptidase C39 family HV561_02450 PF00005 ABC transporter HV561_02450 PF00664 ABC transporter transmembrane region HV561_02455 PF02382 N-terminal domain in RTX protein HV561_02455 PF08339 RTX C-terminal domain HV561_02455 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) HV561_02460 PF02794 RTX toxin acyltransferase family HV561_02475 PF05658 Head domain of trimeric autotransporter adhesin HV561_02475 PF03895 YadA-like membrane anchor domain HV561_02475 PF03895 YadA-like membrane anchor domain HV561_02475 PF13018 Extended Signal Peptide of Type V secretion system HV561_02475 PF13018 Extended Signal Peptide of Type V secretion system HV561_02475 PF05662 Coiled stalk of trimeric autotransporter adhesin HV561_02475 PF05662 Coiled stalk of trimeric autotransporter adhesin HV561_02475 PF05658 Head domain of trimeric autotransporter adhesin HV561_02485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HV561_02490 PF05193 Peptidase M16 inactive domain HV561_02490 PF16187 Middle or third domain of peptidase_M16 HV561_02490 PF00675 Insulinase (Peptidase family M16) HV561_02495 PF17946 RecC C-terminal domain HV561_02520 PF07977 FabA-like domain HV561_02525 PF13654 AAA domain HV561_02525 PF05362 Lon protease (S16) C-terminal proteolytic domain HV561_02530 PF17414 MatP C-terminal ribbon-helix-helix domain HV561_02530 PF06303 MatP N-terminal domain HV561_02535 PF00691 OmpA family HV561_02535 PF01389 OmpA-like transmembrane domain HV561_02540 PF13183 4Fe-4S dicluster domain HV561_02540 PF01565 FAD binding domain HV561_02540 PF02913 FAD linked oxidases, C-terminal domain HV561_02545 PF03061 Thioesterase superfamily HV561_02550 PF02096 60Kd inner membrane protein HV561_02550 PF14849 YidC periplasmic domain HV561_02555 PF08534 Redoxin HV561_02560 PF01553 Acyltransferase HV561_02565 PF07732 Multicopper oxidase HV561_02565 PF07731 Multicopper oxidase HV561_02570 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HV561_02575 PF08543 Phosphomethylpyrimidine kinase HV561_02585 PF03144 Elongation factor Tu domain 2 HV561_02585 PF03143 Elongation factor Tu C-terminal domain HV561_02585 PF00009 Elongation factor Tu GTP binding domain HV561_02610 PF00485 Phosphoribulokinase / Uridine kinase family HV561_02615 PF08534 Redoxin HV561_02620 PF03918 Cytochrome C biogenesis protein HV561_02625 PF03918 Cytochrome C biogenesis protein HV561_02630 PF00994 Probable molybdopterin binding domain HV561_02635 PF00543 Nitrogen regulatory protein P-II HV561_02640 PF01252 Signal peptidase (SPase) II HV561_02645 PF02401 LytB protein HV561_02650 PF03937 Flavinator of succinate dehydrogenase HV561_02655 PF04219 Protein of unknown function, DUF HV561_02660 PF05958 tRNA (Uracil-5-)-methyltransferase HV561_02675 PF04304 Protein of unknown function (DUF454) HV561_02680 PF00589 Phage integrase family HV561_02680 PF02899 Phage integrase, N-terminal SAM-like domain HV561_02685 PF17347 Family of unknown function (DUF5377) HV561_02700 PF05746 DALR anticodon binding domain HV561_02700 PF02092 Glycyl-tRNA synthetase beta subunit HV561_02705 PF04480 Protein of unknown function (DUF559) HV561_02710 PF17761 DUF1016 N-terminal domain HV561_02710 PF06250 YhcG PDDEXK nuclease domain HV561_02725 PF02091 Glycyl-tRNA synthetase alpha subunit HV561_02730 PF04175 Protein of unknown function (DUF406) HV561_02735 PF03480 Bacterial extracellular solute-binding protein, family 7 HV561_02740 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HV561_02745 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HV561_02750 PF16582 Middle domain of thiamine pyrophosphate HV561_02750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HV561_02750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HV561_02755 PF00561 alpha/beta hydrolase fold HV561_02760 PF13335 Magnesium chelatase, subunit ChlI C-terminal HV561_02760 PF01078 Magnesium chelatase, subunit ChlI HV561_02770 PF01494 FAD binding domain HV561_02775 PF05036 Sporulation related domain HV561_02780 PF04445 Putative SAM-dependent methyltransferase HV561_02785 PF02557 D-alanyl-D-alanine carboxypeptidase HV561_02790 PF00132 Bacterial transferase hexapeptide (six repeats) HV561_02790 PF14602 Hexapeptide repeat of succinyl-transferase HV561_02790 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HV561_02795 PF01220 Dehydroquinase class II HV561_02800 PF04488 Glycosyltransferase sugar-binding region containing DXD motif HV561_02805 PF00364 Biotin-requiring enzyme HV561_02810 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HV561_02810 PF02785 Biotin carboxylase C-terminal domain HV561_02810 PF00289 Biotin carboxylase, N-terminal domain HV561_02815 PF08007 Cupin superfamily protein HV561_02820 PF01245 Ribosomal protein L19 HV561_02825 PF01746 tRNA (Guanine-1)-methyltransferase HV561_02830 PF01782 RimM N-terminal domain HV561_02830 PF05239 PRC-barrel domain HV561_02835 PF00886 Ribosomal protein S16 HV561_02840 PF01196 Ribosomal protein L17 HV561_02845 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HV561_02845 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HV561_02845 PF01000 RNA polymerase Rpb3/RpoA insert domain HV561_02850 PF01479 S4 domain HV561_02850 PF00163 Ribosomal protein S4/S9 N-terminal domain HV561_02855 PF00411 Ribosomal protein S11 HV561_02860 PF00416 Ribosomal protein S13/S18 HV561_02865 PF00444 Ribosomal protein L36 HV561_02870 PF00344 SecY translocase HV561_02875 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HV561_02880 PF00327 Ribosomal protein L30p/L7e HV561_02885 PF03719 Ribosomal protein S5, C-terminal domain HV561_02885 PF00333 Ribosomal protein S5, N-terminal domain HV561_02890 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HV561_02895 PF00347 Ribosomal protein L6 HV561_02900 PF00410 Ribosomal protein S8 HV561_02905 PF00253 Ribosomal protein S14p/S29e HV561_02910 PF00281 Ribosomal protein L5 HV561_02910 PF00673 ribosomal L5P family C-terminus HV561_02915 PF00467 KOW motif HV561_02915 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HV561_02920 PF00238 Ribosomal protein L14p/L23e HV561_02925 PF00593 TonB dependent receptor HV561_02925 PF07715 TonB-dependent Receptor Plug Domain HV561_02930 PF00366 Ribosomal protein S17 HV561_02935 PF00831 Ribosomal L29 protein HV561_02940 PF00252 Ribosomal protein L16p/L10e HV561_02945 PF00189 Ribosomal protein S3, C-terminal domain HV561_02945 PF07650 KH domain HV561_02950 PF00237 Ribosomal protein L22p/L17e HV561_02955 PF00203 Ribosomal protein S19 HV561_02960 PF03947 Ribosomal Proteins L2, C-terminal domain HV561_02960 PF00181 Ribosomal Proteins L2, RNA binding domain HV561_02965 PF00276 Ribosomal protein L23 HV561_02970 PF00573 Ribosomal protein L4/L1 family HV561_02975 PF00297 Ribosomal protein L3 HV561_02980 PF00338 Ribosomal protein S10p/S20e HV561_02985 PF04994 TfoX C-terminal domain HV561_02985 PF04993 TfoX N-terminal domain HV561_02990 PF00206 Lyase HV561_02990 PF10415 Fumarase C C-terminus HV561_03000 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HV561_03000 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HV561_03005 PF02798 Glutathione S-transferase, N-terminal domain HV561_03005 PF00043 Glutathione S-transferase, C-terminal domain HV561_03010 PF01523 Putative modulator of DNA gyrase HV561_03055 PF02313 Fumarate reductase subunit D HV561_03060 PF02300 Fumarate reductase subunit C HV561_03065 PF13085 2Fe-2S iron-sulfur cluster binding domain HV561_03065 PF13183 4Fe-4S dicluster domain HV561_03070 PF00890 FAD binding domain HV561_03070 PF02910 Fumarate reductase flavoprotein C-term HV561_03075 PF00152 tRNA synthetases class II (D, K and N) HV561_03080 PF02028 BCCT, betaine/carnitine/choline family transporter HV561_03090 PF03023 Lipid II flippase MurJ HV561_03095 PF01649 Ribosomal protein S20 HV561_03100 PF12724 Flavodoxin domain HV561_03105 PF02386 Cation transport protein HV561_03110 PF01205 Uncharacterized protein family UPF0029 HV561_03110 PF09186 Domain of unknown function (DUF1949) HV561_03115 PF02911 Formyl transferase, C-terminal domain HV561_03115 PF00551 Formyl transferase HV561_03120 PF00005 ABC transporter HV561_03125 PF04055 Radical SAM superfamily HV561_03130 PF03099 Biotin/lipoate A/B protein ligase family HV561_03135 PF04359 Protein of unknown function (DUF493) HV561_03140 PF07943 Penicillin-binding protein 5, C-terminal domain HV561_03140 PF00768 D-alanyl-D-alanine carboxypeptidase HV561_03145 PF03330 Lytic transglycolase HV561_03150 PF01098 Cell cycle protein HV561_03155 PF03717 Penicillin-binding Protein dimerisation domain HV561_03155 PF00905 Penicillin binding protein transpeptidase domain HV561_03160 PF02590 Predicted SPOUT methyltransferase HV561_03170 PF04575 Protein of unknown function (DUF560) HV561_03175 PF00488 MutS domain V HV561_03175 PF05190 MutS family domain IV HV561_03175 PF01624 MutS domain I HV561_03175 PF05188 MutS domain II HV561_03175 PF05192 MutS domain III HV561_03180 PF12167 Arm DNA-binding domain HV561_03180 PF00589 Phage integrase family HV561_03185 PF17854 FtsK alpha domain HV561_03185 PF01580 FtsK/SpoIIIE family HV561_03185 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HV561_03185 PF09397 Ftsk gamma domain HV561_03225 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HV561_03225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HV561_03230 PF00578 AhpC/TSA family HV561_03250 PF10396 GTP-binding protein TrmE N-terminus HV561_03250 PF01926 50S ribosome-binding GTPase HV561_03250 PF12631 MnmE helical domain HV561_03255 PF11734 TilS substrate C-terminal domain HV561_03255 PF09179 TilS substrate binding domain HV561_03255 PF01171 PP-loop family HV561_03260 PF00589 Phage integrase family HV561_03260 PF02899 Phage integrase, N-terminal SAM-like domain HV561_03300 PF01177 Asp/Glu/Hydantoin racemase HV561_03305 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HV561_03305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HV561_03310 PF04345 Chorismate lyase HV561_03315 PF01048 Phosphorylase superfamily HV561_03325 PF13404 AsnC-type helix-turn-helix domain HV561_03325 PF01037 Lrp/AsnC ligand binding domain HV561_03330 PF03590 Aspartate-ammonia ligase HV561_03340 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HV561_03345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HV561_03345 PF02874 ATP synthase alpha/beta family, beta-barrel domain HV561_03350 PF00231 ATP synthase HV561_03355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HV561_03355 PF02874 ATP synthase alpha/beta family, beta-barrel domain HV561_03355 PF00306 ATP synthase alpha/beta chain, C terminal domain HV561_03360 PF00213 ATP synthase delta (OSCP) subunit HV561_03365 PF00430 ATP synthase B/B' CF(0) HV561_03370 PF00137 ATP synthase subunit C HV561_03375 PF00119 ATP synthase A chain HV561_03390 PF02527 rRNA small subunit methyltransferase G HV561_03430 PF01134 Glucose inhibited division protein A HV561_03430 PF13932 GidA associated domain HV561_03435 PF02810 SEC-C motif HV561_03445 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HV561_03445 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HV561_03445 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HV561_03445 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HV561_03450 PF01156 Inosine-uridine preferring nucleoside hydrolase HV561_03455 PF17191 RecG wedge domain HV561_03455 PF00270 DEAD/DEAH box helicase HV561_03455 PF00271 Helicase conserved C-terminal domain HV561_03460 PF00183 Hsp90 protein HV561_03460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HV561_03470 PF03129 Anticodon binding domain HV561_03470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HV561_03470 PF04073 Aminoacyl-tRNA editing domain HV561_03475 PF00593 TonB dependent receptor HV561_03475 PF07715 TonB-dependent Receptor Plug Domain HV561_03480 PF08479 POTRA domain, ShlB-type HV561_03480 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HV561_03485 PF05860 haemagglutination activity domain HV561_03495 PF00258 Flavodoxin HV561_03505 PF00701 Dihydrodipicolinate synthetase family HV561_03510 PF00480 ROK family HV561_03515 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase HV561_03530 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system HV561_03540 PF12390 Selenocysteine synthase N terminal HV561_03540 PF03841 L-seryl-tRNA selenium transferase HV561_03555 PF09106 Elongation factor SelB, winged helix HV561_03555 PF09107 Elongation factor SelB, winged helix HV561_03555 PF00009 Elongation factor Tu GTP binding domain HV561_03555 PF03144 Elongation factor Tu domain 2 HV561_03560 PF13018 Extended Signal Peptide of Type V secretion system HV561_03560 PF05658 Head domain of trimeric autotransporter adhesin HV561_03560 PF03895 YadA-like membrane anchor domain HV561_03560 PF05662 Coiled stalk of trimeric autotransporter adhesin HV561_03565 PF16868 NMT1-like family HV561_03580 PF01189 16S rRNA methyltransferase RsmB/F HV561_03580 PF01029 NusB family HV561_03585 PF02254 TrkA-N domain HV561_03585 PF02080 TrkA-C domain HV561_03590 PF00596 Class II Aldolase and Adducin N-terminal domain HV561_03595 PF05025 RbsD / FucU transport protein family HV561_03600 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HV561_03600 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HV561_03605 PF02952 L-fucose isomerase, C-terminal domain HV561_03605 PF07881 L-fucose isomerase, first N-terminal domain HV561_03605 PF07882 L-fucose isomerase, second N-terminal domain HV561_03610 PF00455 DeoR C terminal sensor domain HV561_03610 PF08220 DeoR-like helix-turn-helix domain HV561_03620 PF13173 AAA domain HV561_03620 PF13635 Domain of unknown function (DUF4143) HV561_03625 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HV561_03625 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HV561_03625 PF02769 AIR synthase related protein, C-terminal domain HV561_03640 PF00593 TonB dependent receptor HV561_03640 PF07715 TonB-dependent Receptor Plug Domain HV561_03650 PF00710 Asparaginase, N-terminal HV561_03650 PF17763 Glutaminase/Asparaginase C-terminal domain HV561_03655 PF01794 Ferric reductase like transmembrane component HV561_03660 PF00174 Oxidoreductase molybdopterin binding domain HV561_03670 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HV561_03670 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HV561_03675 PF01841 Transglutaminase-like superfamily HV561_03685 PF00403 Heavy-metal-associated domain HV561_03690 PF01380 SIS domain HV561_03690 PF00571 CBS domain HV561_03695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HV561_03695 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HV561_03695 PF02378 Phosphotransferase system, EIIC HV561_03700 PF01232 Mannitol dehydrogenase Rossmann domain HV561_03700 PF08125 Mannitol dehydrogenase C-terminal domain HV561_03705 PF05068 Mannitol repressor HV561_03710 PF02080 TrkA-C domain HV561_03710 PF03600 Citrate transporter HV561_03715 PF02615 Malate/L-lactate dehydrogenase HV561_03720 PF04074 YhcH/YjgK/YiaL HV561_03725 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component HV561_03730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HV561_03735 PF03480 Bacterial extracellular solute-binding protein, family 7 HV561_03745 PF00005 ABC transporter HV561_03750 PF02653 Branched-chain amino acid transport system / permease component HV561_03765 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HV561_03765 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HV561_03770 PF05957 Bacterial protein of unknown function (DUF883) HV561_03775 PF07332 Putative Actinobacterial Holin-X, holin superfamily III HV561_03785 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HV561_03785 PF01266 FAD dependent oxidoreductase HV561_03790 PF07690 Major Facilitator Superfamily HV561_03795 PF03009 Glycerophosphoryl diester phosphodiesterase family HV561_03800 PF00455 DeoR C terminal sensor domain HV561_03800 PF08220 DeoR-like helix-turn-helix domain HV561_03805 PF01380 SIS domain HV561_03815 PF00005 ABC transporter HV561_03835 PF02447 GntP family permease HV561_03840 PF01370 NAD dependent epimerase/dehydratase family HV561_03845 PF01261 Xylose isomerase-like TIM barrel HV561_03850 PF00596 Class II Aldolase and Adducin N-terminal domain HV561_03855 PF07005 Sugar-binding N-terminal domain HV561_03855 PF17042 Nucleotide-binding C-terminal domain HV561_03860 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HV561_03860 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HV561_03865 PF08220 DeoR-like helix-turn-helix domain HV561_03865 PF00455 DeoR C terminal sensor domain HV561_03875 PF00528 Binding-protein-dependent transport system inner membrane component HV561_03880 PF00596 Class II Aldolase and Adducin N-terminal domain HV561_03885 PF01261 Xylose isomerase-like TIM barrel HV561_03890 PF00455 DeoR C terminal sensor domain HV561_03890 PF08220 DeoR-like helix-turn-helix domain HV561_03900 PF03611 PTS system sugar-specific permease component HV561_03905 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HV561_03910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HV561_03915 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HV561_03930 PF12544 Lysine-2,3-aminomutase HV561_03930 PF04055 Radical SAM superfamily HV561_03935 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HV561_03935 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HV561_03935 PF01842 ACT domain HV561_03950 PF02595 Glycerate kinase family HV561_03955 PF00919 Uncharacterized protein family UPF0004 HV561_03955 PF04055 Radical SAM superfamily HV561_03955 PF18693 TRAM domain HV561_03960 PF01048 Phosphorylase superfamily HV561_03965 PF04102 SlyX HV561_03970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HV561_03970 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HV561_03975 PF08348 YheO-like PAS domain HV561_03975 PF13309 HTH domain HV561_03980 PF02635 DsrE/DsrF-like family HV561_03985 PF02635 DsrE/DsrF-like family HV561_03990 PF04077 DsrH like protein HV561_04000 PF02978 Signal peptide binding domain HV561_04000 PF00448 SRP54-type protein, GTPase domain HV561_04000 PF02881 SRP54-type protein, helical bundle domain HV561_04025 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HV561_04025 PF01464 Transglycosylase SLT domain HV561_04030 PF04362 Bacterial Fe(2+) trafficking HV561_04035 PF00730 HhH-GPD superfamily base excision DNA repair protein HV561_04035 PF14815 NUDIX domain HV561_04040 PF17746 SfsA N-terminal OB domain HV561_04040 PF03749 Sugar fermentation stimulation protein RE domain HV561_04045 PF00227 Proteasome subunit HV561_04050 PF07724 AAA domain (Cdc48 subfamily) HV561_04050 PF10431 C-terminal, D2-small domain, of ClpB protein HV561_04050 PF00004 ATPase family associated with various cellular activities (AAA) HV561_04055 PF04393 Protein of unknown function (DUF535) HV561_04065 PF13018 Extended Signal Peptide of Type V secretion system HV561_04065 PF05658 Head domain of trimeric autotransporter adhesin HV561_04065 PF03895 YadA-like membrane anchor domain HV561_04065 PF13018 Extended Signal Peptide of Type V secretion system HV561_04065 PF05662 Coiled stalk of trimeric autotransporter adhesin HV561_04065 PF05658 Head domain of trimeric autotransporter adhesin HV561_04065 PF03895 YadA-like membrane anchor domain HV561_04065 PF05662 Coiled stalk of trimeric autotransporter adhesin HV561_04080 PF04962 KduI/IolB family HV561_04085 PF00171 Aldehyde dehydrogenase family HV561_04090 PF13407 Periplasmic binding protein domain HV561_04095 PF00005 ABC transporter HV561_04100 PF02653 Branched-chain amino acid transport system / permease component HV561_04105 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HV561_04105 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HV561_04115 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HV561_04115 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HV561_04120 PF01261 Xylose isomerase-like TIM barrel HV561_04125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HV561_04125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HV561_04125 PF00205 Thiamine pyrophosphate enzyme, central domain HV561_04130 PF00294 pfkB family carbohydrate kinase HV561_04140 PF02378 Phosphotransferase system, EIIC HV561_04145 PF01380 SIS domain HV561_04145 PF01418 Helix-turn-helix domain, rpiR family HV561_04150 PF00367 phosphotransferase system, EIIB HV561_04150 PF02378 Phosphotransferase system, EIIC HV561_04150 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HV561_04155 PF01370 NAD dependent epimerase/dehydratase family HV561_04160 PF01327 Polypeptide deformylase HV561_04165 PF17782 DprA winged helix domain HV561_04165 PF02481 DNA recombination-mediator protein A HV561_04170 PF02780 Transketolase, C-terminal domain HV561_04170 PF02779 Transketolase, pyrimidine binding domain HV561_04175 PF00456 Transketolase, thiamine diphosphate binding domain HV561_04180 PF03611 PTS system sugar-specific permease component HV561_04190 PF00356 Bacterial regulatory proteins, lacI family HV561_04195 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HV561_04200 PF02357 Transcription termination factor nusG HV561_04200 PF00467 KOW motif HV561_04205 PF00298 Ribosomal protein L11, RNA binding domain HV561_04205 PF03946 Ribosomal protein L11, N-terminal domain HV561_04210 PF00687 Ribosomal protein L1p/L10e family HV561_04215 PF00466 Ribosomal protein L10 HV561_04220 PF16320 Ribosomal protein L7/L12 dimerisation domain HV561_04220 PF00542 Ribosomal protein L7/L12 C-terminal domain HV561_04225 PF01850 PIN domain HV561_04230 PF01381 Helix-turn-helix HV561_04245 PF04560 RNA polymerase Rpb2, domain 7 HV561_04245 PF00562 RNA polymerase Rpb2, domain 6 HV561_04245 PF04565 RNA polymerase Rpb2, domain 3 HV561_04245 PF10385 RNA polymerase beta subunit external 1 domain HV561_04245 PF04561 RNA polymerase Rpb2, domain 2 HV561_04245 PF04563 RNA polymerase beta subunit HV561_04250 PF04998 RNA polymerase Rpb1, domain 5 HV561_04250 PF05000 RNA polymerase Rpb1, domain 4 HV561_04250 PF04983 RNA polymerase Rpb1, domain 3 HV561_04250 PF00623 RNA polymerase Rpb1, domain 2 HV561_04250 PF04997 RNA polymerase Rpb1, domain 1 HV561_04265 PF00202 Aminotransferase class-III HV561_04270 PF00953 Glycosyl transferase family 4 HV561_04275 PF03951 Glutamine synthetase, beta-Grasp domain HV561_04275 PF00120 Glutamine synthetase, catalytic domain HV561_04340 PF01926 50S ribosome-binding GTPase HV561_04345 PF06877 Regulator of ribonuclease activity B HV561_04350 PF01206 Sulfurtransferase TusA HV561_04355 PF00557 Metallopeptidase family M24 HV561_04360 PF04186 FxsA cytoplasmic membrane protein HV561_04370 PF00849 RNA pseudouridylate synthase HV561_04375 PF00293 NUDIX domain HV561_04375 PF09297 NADH pyrophosphatase zinc ribbon domain HV561_04390 PF01207 Dihydrouridine synthase (Dus) HV561_04395 PF10063 Uncharacterized integral membrane protein (DUF2301) HV561_04405 PF00694 Aconitase C-terminal domain HV561_04410 PF00330 Aconitase family (aconitate hydratase) HV561_04415 PF01433 Peptidase family M1 domain HV561_04415 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HV561_04415 PF11940 Domain of unknown function (DUF3458) Ig-like fold HV561_04420 PF01243 Pyridoxamine 5'-phosphate oxidase HV561_04425 PF00593 TonB dependent receptor HV561_04425 PF07715 TonB-dependent Receptor Plug Domain HV561_04435 PF03222 Tryptophan/tyrosine permease family HV561_04440 PF03461 TRCF domain HV561_04440 PF02559 CarD-like/TRCF domain HV561_04440 PF17757 UvrB interaction domain HV561_04440 PF00271 Helicase conserved C-terminal domain HV561_04440 PF00270 DEAD/DEAH box helicase HV561_04480 PF01370 NAD dependent epimerase/dehydratase family HV561_04485 PF00950 ABC 3 transport family HV561_04490 PF00950 ABC 3 transport family HV561_04495 PF00005 ABC transporter HV561_04500 PF01297 Zinc-uptake complex component A periplasmic HV561_04505 PF04055 Radical SAM superfamily HV561_04515 PF16921 Tex protein YqgF-like domain HV561_04515 PF17674 HHH domain HV561_04515 PF00575 S1 RNA binding domain HV561_04515 PF09371 Tex-like protein N-terminal domain HV561_04520 PF00106 short chain dehydrogenase HV561_04525 PF00881 Nitroreductase family HV561_04530 PF01343 Peptidase family S49 HV561_04535 PF02581 Thiamine monophosphate synthase HV561_04545 PF07690 Major Facilitator Superfamily HV561_04550 PF02110 Hydroxyethylthiazole kinase family HV561_04560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HV561_04560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HV561_04560 PF00205 Thiamine pyrophosphate enzyme, central domain HV561_04565 PF02335 Cytochrome c552 HV561_04575 PF13247 4Fe-4S dicluster domain HV561_04580 PF03916 Polysulphide reductase, NrfD HV561_04585 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HV561_04585 PF01578 Cytochrome C assembly protein HV561_04590 PF08534 Redoxin HV561_04595 PF03918 Cytochrome C biogenesis protein HV561_04605 PF03060 Nitronate monooxygenase HV561_04610 PF00271 Helicase conserved C-terminal domain HV561_04610 PF00270 DEAD/DEAH box helicase HV561_04610 PF09382 RQC domain HV561_04610 PF00570 HRDC domain HV561_04610 PF16124 RecQ zinc-binding HV561_04620 PF03466 LysR substrate binding domain HV561_04620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HV561_04625 PF01740 STAS domain HV561_04625 PF00916 Sulfate permease family HV561_04635 PF00595 PDZ domain HV561_04640 PF00005 ABC transporter HV561_04645 PF02405 Permease MlaE HV561_04650 PF02470 MlaD protein HV561_04655 PF05494 MlaC protein HV561_04660 PF13466 STAS domain HV561_04665 PF01722 BolA-like protein HV561_04670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HV561_04675 PF02075 Crossover junction endodeoxyribonuclease RuvC HV561_04685 PF01709 Transcriptional regulator HV561_04690 PF00293 NUDIX domain HV561_04705 PF02938 GAD domain HV561_04705 PF00152 tRNA synthetases class II (D, K and N) HV561_04705 PF01336 OB-fold nucleic acid binding domain HV561_04710 PF03956 Lysine exporter LysO HV561_04715 PF01435 Peptidase family M48 HV561_04725 PF01226 Formate/nitrite transporter HV561_04730 PF02901 Pyruvate formate lyase-like HV561_04730 PF01228 Glycine radical HV561_04740 PF12762 ISXO2-like transposase domain HV561_04765 PF04055 Radical SAM superfamily HV561_04770 PF01432 Peptidase family M3 HV561_04775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HV561_04780 PF01817 Chorismate mutase type II HV561_04780 PF00800 Prephenate dehydratase HV561_04785 PF12633 Adenylate cyclase NT domain HV561_04785 PF01295 Adenylate cyclase, class-I HV561_04790 PF02801 Beta-ketoacyl synthase, C-terminal domain HV561_04790 PF00109 Beta-ketoacyl synthase, N-terminal domain HV561_04800 PF00464 Serine hydroxymethyltransferase HV561_04805 PF13018 Extended Signal Peptide of Type V secretion system HV561_04805 PF05662 Coiled stalk of trimeric autotransporter adhesin HV561_04805 PF05662 Coiled stalk of trimeric autotransporter adhesin HV561_04805 PF05658 Head domain of trimeric autotransporter adhesin HV561_04805 PF05658 Head domain of trimeric autotransporter adhesin HV561_04805 PF03895 YadA-like membrane anchor domain HV561_04805 PF03895 YadA-like membrane anchor domain HV561_04805 PF13018 Extended Signal Peptide of Type V secretion system HV561_04810 PF01717 Cobalamin-independent synthase, Catalytic domain HV561_04810 PF08267 Cobalamin-independent synthase, N-terminal domain HV561_04820 PF01513 ATP-NAD kinase HV561_04825 PF00588 SpoU rRNA Methylase family HV561_04825 PF08032 RNA 2'-O ribose methyltransferase substrate binding HV561_04830 PF00459 Inositol monophosphatase family HV561_04835 PF02780 Transketolase, C-terminal domain HV561_04835 PF02779 Transketolase, pyrimidine binding domain HV561_04835 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HV561_04840 PF00892 EamA-like transporter family HV561_04845 PF02554 Carbon starvation protein CstA HV561_04850 PF01026 TatD related DNase HV561_04855 PF09825 Biotin-protein ligase, N terminal HV561_04865 PF07690 Major Facilitator Superfamily HV561_04870 PF03129 Anticodon binding domain HV561_04870 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HV561_04870 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HV561_04870 PF02824 TGS domain HV561_04875 PF03544 Gram-negative bacterial TonB protein C-terminal HV561_04880 PF02472 Biopolymer transport protein ExbD/TolR HV561_04885 PF01618 MotA/TolQ/ExbB proton channel family HV561_04890 PF00581 Rhodanese-like domain HV561_04900 PF07992 Pyridine nucleotide-disulphide oxidoreductase HV561_04905 PF02348 Cytidylyltransferase HV561_04910 PF03966 Trm112p-like protein HV561_04915 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HV561_04925 PF05656 Protein of unknown function (DUF805) HV561_04935 PF13784 Fic/DOC family N-terminal HV561_04935 PF02661 Fic/DOC family HV561_04940 PF06689 ClpX C4-type zinc finger HV561_04940 PF07724 AAA domain (Cdc48 subfamily) HV561_04940 PF10431 C-terminal, D2-small domain, of ClpB protein HV561_04945 PF00574 Clp protease HV561_04950 PF02657 Fe-S metabolism associated domain HV561_04965 PF14497 Glutathione S-transferase, C-terminal domain HV561_04965 PF02798 Glutathione S-transferase, N-terminal domain HV561_04970 PF02885 Glycosyl transferase family, helical bundle domain HV561_04970 PF00591 Glycosyl transferase family, a/b domain HV561_04975 PF00117 Glutamine amidotransferase class-I HV561_04980 PF00425 chorismate binding enzyme HV561_04980 PF04715 Anthranilate synthase component I, N terminal region HV561_04985 PF01300 Telomere recombination HV561_04990 PF00849 RNA pseudouridylate synthase HV561_04990 PF01479 S4 domain HV561_04995 PF03600 Citrate transporter HV561_04995 PF02080 TrkA-C domain HV561_05000 PF12704 MacB-like periplasmic core domain HV561_05000 PF02687 FtsX-like permease family HV561_05005 PF00005 ABC transporter HV561_05010 PF02687 FtsX-like permease family HV561_05010 PF12704 MacB-like periplasmic core domain HV561_05015 PF00793 DAHP synthetase I family HV561_05020 PF02661 Fic/DOC family HV561_05020 PF17841 BID domain of Bartonella effector protein (Bep) HV561_05025 PF13369 Transglutaminase-like superfamily HV561_05030 PF13847 Methyltransferase domain HV561_05030 PF17827 PrmC N-terminal domain HV561_05035 PF03462 PCRF domain HV561_05035 PF00472 RF-1 domain HV561_05040 PF00117 Glutamine amidotransferase class-I HV561_05045 PF02646 RmuC family HV561_05050 PF00425 chorismate binding enzyme HV561_05055 PF01063 Amino-transferase class IV HV561_05060 PF00154 recA bacterial DNA recombination protein HV561_05065 PF02631 RecX family HV561_05070 PF04266 ASCH domain HV561_05075 PF01396 Topoisomerase DNA binding C4 zinc finger HV561_05080 PF01300 Telomere recombination HV561_05085 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HV561_05085 PF01488 Shikimate / quinate 5-dehydrogenase HV561_05085 PF08501 Shikimate dehydrogenase substrate binding domain HV561_05110 PF00551 Formyl transferase HV561_05130 PF05491 RuvB C-terminal winged helix domain HV561_05130 PF05496 Holliday junction DNA helicase RuvB P-loop domain HV561_05130 PF17864 RuvB AAA lid domain HV561_05135 PF01330 RuvA N terminal domain HV561_05135 PF07499 RuvA, C-terminal domain HV561_05140 PF01810 LysE type translocator HV561_05145 PF04608 Phosphatidylglycerophosphatase A HV561_05150 PF02769 AIR synthase related protein, C-terminal domain HV561_05150 PF00586 AIR synthase related protein, N-terminal domain HV561_05155 PF01029 NusB family HV561_05160 PF00263 Bacterial type II and III secretion system protein HV561_05160 PF03958 Bacterial type II/III secretion system short domain HV561_05185 PF00912 Transglycosylase HV561_05185 PF17092 Penicillin-binding protein OB-like domain HV561_05185 PF00905 Penicillin binding protein transpeptidase domain HV561_05190 PF01202 Shikimate kinase HV561_05195 PF01761 3-dehydroquinate synthase HV561_05200 PF02086 D12 class N6 adenine-specific DNA methyltransferase HV561_05205 PF02774 Semialdehyde dehydrogenase, dimerisation domain HV561_05205 PF01118 Semialdehyde dehydrogenase, NAD binding domain HV561_05210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HV561_05210 PF03466 LysR substrate binding domain HV561_05215 PF18075 FtsX extracellular domain HV561_05220 PF00005 ABC transporter HV561_05225 PF00448 SRP54-type protein, GTPase domain HV561_05225 PF02881 SRP54-type protein, helical bundle domain HV561_05235 PF04269 Protein of unknown function, DUF440 HV561_05240 PF01613 Flavin reductase like domain HV561_05245 PF09313 Domain of unknown function (DUF1971) HV561_05245 PF03848 Tellurite resistance protein TehB HV561_05250 PF02769 AIR synthase related protein, C-terminal domain HV561_05250 PF00586 AIR synthase related protein, N-terminal domain HV561_05255 PF00005 ABC transporter HV561_05260 PF00162 Phosphoglycerate kinase HV561_05265 PF01116 Fructose-bisphosphate aldolase class-II HV561_05280 PF00528 Binding-protein-dependent transport system inner membrane component HV561_05285 PF00528 Binding-protein-dependent transport system inner membrane component HV561_05290 PF08402 TOBE domain HV561_05290 PF00005 ABC transporter HV561_05295 PF00580 UvrD/REP helicase N-terminal domain HV561_05295 PF13361 UvrD-like helicase C-terminal domain HV561_05300 PF00881 Nitroreductase family HV561_05305 PF07992 Pyridine nucleotide-disulphide oxidoreductase HV561_05305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HV561_05315 PF04216 Protein involved in formate dehydrogenase formation HV561_05320 PF01292 Prokaryotic cytochrome b561 HV561_05325 PF13247 4Fe-4S dicluster domain HV561_05325 PF09163 Formate dehydrogenase N, transmembrane HV561_05335 PF02634 FdhD/NarQ family HV561_05345 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HV561_05350 PF09190 DALR domain HV561_05350 PF01406 tRNA synthetases class I (C) catalytic domain HV561_05355 PF09383 NIL domain HV561_05355 PF00005 ABC transporter HV561_05360 PF00528 Binding-protein-dependent transport system inner membrane component HV561_05365 PF03180 NLPA lipoprotein HV561_05370 PF03180 NLPA lipoprotein HV561_05380 PF01494 FAD binding domain HV561_05385 PF03668 P-loop ATPase protein family HV561_05390 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HV561_05395 PF12399 Branched-chain amino acid ATP-binding cassette transporter HV561_05395 PF00005 ABC transporter HV561_05400 PF03968 OstA-like protein HV561_05405 PF06835 Lipopolysaccharide-assembly, LptC-related HV561_05410 PF03372 Endonuclease/Exonuclease/phosphatase family HV561_05415 PF03553 Na+/H+ antiporter family HV561_05415 PF13726 Na+-H+ antiporter family HV561_05420 PF02446 4-alpha-glucanotransferase HV561_05425 PF00343 Carbohydrate phosphorylase HV561_05430 PF17874 MalT-like TPR region HV561_05430 PF00196 Bacterial regulatory proteins, luxR family HV561_05435 PF00528 Binding-protein-dependent transport system inner membrane component HV561_05440 PF00528 Binding-protein-dependent transport system inner membrane component HV561_05440 PF14785 Maltose transport system permease protein MalF P2 domain HV561_05445 PF01547 Bacterial extracellular solute-binding protein HV561_05450 PF00005 ABC transporter HV561_05450 PF17912 MalK OB fold domain HV561_05455 PF02264 LamB porin HV561_05460 PF07148 Maltose operon periplasmic protein precursor (MalM) HV561_05465 PF01171 PP-loop family HV561_05480 PF00521 DNA gyrase/topoisomerase IV, subunit A HV561_05480 PF03989 DNA gyrase C-terminal domain, beta-propeller HV561_05485 PF12161 HsdM N-terminal domain HV561_05485 PF02384 N-6 DNA Methylase HV561_05495 PF01420 Type I restriction modification DNA specificity domain HV561_05505 PF12008 Type I restriction and modification enzyme - subunit R C terminal HV561_05505 PF18766 SWI2/SNF2 ATPase HV561_05505 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HV561_05510 PF00005 ABC transporter HV561_05510 PF16326 ABC transporter C-terminal domain HV561_05510 PF12848 ABC transporter HV561_05515 PF00899 ThiF family HV561_05520 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HV561_05520 PF11892 Domain of unknown function (DUF3412) HV561_05520 PF03641 Possible lysine decarboxylase HV561_05525 PF00883 Cytosol aminopeptidase family, catalytic domain HV561_05525 PF02789 Cytosol aminopeptidase family, N-terminal domain HV561_05530 PF03739 Lipopolysaccharide export system permease LptF/LptG HV561_05535 PF03739 Lipopolysaccharide export system permease LptF/LptG HV561_05540 PF07733 Bacterial DNA polymerase III alpha NTPase domain HV561_05540 PF01336 OB-fold nucleic acid binding domain HV561_05540 PF02811 PHP domain HV561_05540 PF14579 Helix-hairpin-helix motif HV561_05540 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HV561_05550 PF16325 Peptidase family U32 C-terminal domain HV561_05550 PF01136 Peptidase family U32 HV561_05555 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HV561_05555 PF00534 Glycosyl transferases group 1 HV561_05560 PF01467 Cytidylyltransferase-like HV561_05565 PF00929 Exonuclease HV561_05570 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HV561_05585 PF13520 Amino acid permease HV561_05595 PF13533 Biotin-lipoyl like HV561_05600 PF00005 ABC transporter HV561_05610 PF02321 Outer membrane efflux protein HV561_05615 PF00465 Iron-containing alcohol dehydrogenase HV561_05615 PF00171 Aldehyde dehydrogenase family HV561_05620 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HV561_05620 PF03900 Porphobilinogen deaminase, C-terminal domain HV561_05625 PF02602 Uroporphyrinogen-III synthase HemD HV561_05630 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HV561_05635 PF07219 HemY protein N-terminus HV561_05640 PF05661 Protein of unknown function (DUF808) HV561_05645 PF00312 Ribosomal protein S15 HV561_05650 PF13145 PPIC-type PPIASE domain HV561_05655 PF01914 MarC family integral membrane protein HV561_05660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HV561_05665 PF10609 NUBPL iron-transfer P-loop NTPase HV561_05675 PF01227 GTP cyclohydrolase I HV561_05680 PF01416 tRNA pseudouridine synthase HV561_05685 PF00403 Heavy-metal-associated domain HV561_05690 PF00403 Heavy-metal-associated domain HV561_05700 PF00376 MerR family regulatory protein HV561_05700 PF09278 MerR, DNA binding HV561_05710 PF13651 Adenine-specific methyltransferase EcoRI HV561_05715 PF00204 DNA gyrase B HV561_05715 PF01751 Toprim domain HV561_05715 PF00986 DNA gyrase B subunit, carboxyl terminus HV561_05715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HV561_05720 PF02660 Glycerol-3-phosphate acyltransferase HV561_05725 PF02152 Dihydroneopterin aldolase HV561_05730 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HV561_05730 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HV561_05735 PF00004 ATPase family associated with various cellular activities (AAA) HV561_05735 PF10431 C-terminal, D2-small domain, of ClpB protein HV561_05735 PF07724 AAA domain (Cdc48 subfamily) HV561_05735 PF02861 Clp amino terminal domain, pathogenicity island component HV561_05735 PF17871 AAA lid domain HV561_05740 PF00920 Dehydratase family HV561_05745 PF03658 RnfH family Ubiquitin HV561_05750 PF03364 Polyketide cyclase / dehydrase and lipid transport HV561_05755 PF00005 ABC transporter HV561_05755 PF03459 TOBE domain HV561_05760 PF00528 Binding-protein-dependent transport system inner membrane component HV561_05770 PF01061 ABC-2 type transporter HV561_05775 PF00005 ABC transporter HV561_05780 PF12170 DNA polymerase III tau subunit V interacting with alpha HV561_05780 PF12169 DNA polymerase III subunits gamma and tau domain III HV561_05785 PF00156 Phosphoribosyl transferase domain HV561_05790 PF04358 DsrC like protein HV561_05795 PF01027 Inhibitor of apoptosis-promoting Bax1 HV561_05800 PF01066 CDP-alcohol phosphatidyltransferase HV561_05805 PF08459 UvrC Helix-hairpin-helix N-terminal HV561_05805 PF02151 UvrB/uvrC motif HV561_05805 PF01541 GIY-YIG catalytic domain HV561_05860 PF12762 ISXO2-like transposase domain HV561_05865 PF00860 Permease family HV561_05870 PF00085 Thioredoxin HV561_05875 PF07992 Pyridine nucleotide-disulphide oxidoreductase HV561_05880 PF00860 Permease family HV561_05885 PF02355 Protein export membrane protein HV561_05885 PF07549 SecD/SecF GG Motif HV561_05890 PF13721 SecD export protein N-terminal TM region HV561_05890 PF07549 SecD/SecF GG Motif HV561_05890 PF02355 Protein export membrane protein HV561_05895 PF02699 Preprotein translocase subunit HV561_05900 PF00149 Calcineurin-like phosphoesterase HV561_05915 PF08502 LeuA allosteric (dimerisation) domain HV561_05915 PF00682 HMGL-like HV561_05920 PF08281 Sigma-70, region 4 HV561_05920 PF04542 Sigma-70 region 2 HV561_05925 PF03872 Anti sigma-E protein RseA, N-terminal domain HV561_05925 PF03873 Anti sigma-E protein RseA, C-terminal domain HV561_05940 PF00501 AMP-binding enzyme HV561_05940 PF13193 AMP-binding enzyme C-terminal domain HV561_05950 PF06969 HemN C-terminal domain HV561_05950 PF04055 Radical SAM superfamily HV561_05955 PF12793 Sugar transport-related sRNA regulator N-term HV561_05955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HV561_05960 PF00528 Binding-protein-dependent transport system inner membrane component HV561_05965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HV561_05965 PF00005 ABC transporter HV561_05970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HV561_05970 PF00005 ABC transporter HV561_05975 PF00890 FAD binding domain HV561_05980 PF03553 Na+/H+ antiporter family HV561_05985 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HV561_05985 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HV561_05985 PF13288 DXP reductoisomerase C-terminal domain HV561_05990 PF02824 TGS domain HV561_05990 PF04607 Region found in RelA / SpoT proteins HV561_05990 PF13291 ACT domain HV561_05995 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HV561_05995 PF01488 Shikimate / quinate 5-dehydrogenase HV561_05995 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HV561_06000 PF01926 50S ribosome-binding GTPase HV561_06000 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HV561_06005 PF01467 Cytidylyltransferase-like HV561_06005 PF00294 pfkB family carbohydrate kinase HV561_06010 PF00156 Phosphoribosyl transferase domain HV561_06015 PF00639 PPIC-type PPIASE domain HV561_06015 PF09312 SurA N-terminal domain HV561_06020 PF00398 Ribosomal RNA adenine dimethylase HV561_06025 PF00578 AhpC/TSA family HV561_06035 PF08019 Phosphoethanolamine transferase EptA/EptB HV561_06035 PF00884 Sulfatase HV561_06040 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HV561_06040 PF14489 QueF-like protein HV561_06045 PF03702 Anhydro-N-acetylmuramic acid kinase HV561_06050 PF01380 SIS domain HV561_06055 PF05175 Methyltransferase small domain HV561_06060 PF01713 Smr domain HV561_06080 PF00989 PAS fold HV561_06080 PF18415 Histidine kinase receptor ArcB trans-membrane domain HV561_06080 PF00512 His Kinase A (phospho-acceptor) domain HV561_06080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HV561_06080 PF01627 Hpt domain HV561_06080 PF00072 Response regulator receiver domain HV561_06085 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HV561_06085 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HV561_06090 PF02082 Transcriptional regulator HV561_06095 PF00266 Aminotransferase class-V HV561_06100 PF01592 NifU-like N terminal domain HV561_06105 PF01521 Iron-sulphur cluster biosynthesis HV561_06110 PF07743 HSCB C-terminal oligomerisation domain HV561_06115 PF10946 Protein of unknown function DUF2625 HV561_06120 PF00012 Hsp70 protein HV561_06130 PF00111 2Fe-2S iron-sulfur cluster binding domain HV561_06135 PF04384 Iron-sulphur cluster assembly HV561_06140 PF01966 HD domain HV561_06140 PF01743 Poly A polymerase head domain HV561_06140 PF12627 Probable RNA and SrmB- binding site of polymerase A HV561_06210 PF04381 Putative exonuclease, RdgC HV561_06275 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB HV561_06325 PF00772 DnaB-like helicase N terminal domain HV561_06325 PF03796 DnaB-like helicase C terminal domain HV561_06390 PF00959 Phage lysozyme HV561_06410 PF03592 Terminase small subunit HV561_06415 PF04466 Phage terminase large subunit HV561_06415 PF17288 Terminase RNAseH like domain HV561_06475 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system HV561_06480 PF07927 HicA toxin of bacterial toxin-antitoxin, HV561_06590 PF04381 Putative exonuclease, RdgC HV561_06660 PF05973 Phage derived protein Gp49-like (DUF891) HV561_06665 PF01381 Helix-turn-helix HV561_06765 PF00959 Phage lysozyme HV561_06785 PF03592 Terminase small subunit HV561_06790 PF04466 Phage terminase large subunit HV561_06790 PF17288 Terminase RNAseH like domain HV561_06910 PF00730 HhH-GPD superfamily base excision DNA repair protein HV561_06910 PF00633 Helix-hairpin-helix motif HV561_06910 PF10576 Iron-sulfur binding domain of endonuclease III HV561_06915 PF01925 Sulfite exporter TauE/SafE HV561_06920 PF01472 PUA domain HV561_06920 PF00696 Amino acid kinase family HV561_06925 PF00186 Dihydrofolate reductase HV561_06930 PF10688 Bacterial inner membrane protein HV561_06935 PF18073 Rubredoxin metal binding domain HV561_06940 PF07963 Prokaryotic N-terminal methylation motif HV561_06945 PF00437 Type II/IV secretion system protein HV561_06945 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HV561_06950 PF00482 Type II secretion system (T2SS), protein F HV561_06960 PF01121 Dephospho-CoA kinase HV561_06965 PF06144 DNA polymerase III, delta subunit HV561_06965 PF14840 Processivity clamp loader gamma complex DNA pol III C-term HV561_06970 PF04390 Lipopolysaccharide-assembly HV561_06975 PF00133 tRNA synthetases class I (I, L, M and V) HV561_06975 PF08264 Anticodon-binding domain of tRNA HV561_06975 PF13603 Leucyl-tRNA synthetase, Domain 2 HV561_07020 PF05069 Phage virion morphogenesis family HV561_07025 PF06715 Gp5 C-terminal repeat (3 copies) HV561_07025 PF04717 Type VI secretion system, phage-baseplate injector HV561_07070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HV561_07070 PF02403 Seryl-tRNA synthetase N-terminal domain HV561_07075 PF01668 SmpB protein HV561_07080 PF04317 YcjX-like family, DUF463 HV561_07085 PF01928 CYTH domain HV561_07090 PF03701 Uncharacterised protein family (UPF0181) HV561_07095 PF00849 RNA pseudouridylate synthase HV561_07100 PF04287 tRNA pseudouridine synthase C HV561_07105 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HV561_07105 PF00218 Indole-3-glycerol phosphate synthase HV561_07110 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HV561_07110 PF01266 FAD dependent oxidoreductase HV561_07115 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HV561_07115 PF00132 Bacterial transferase hexapeptide (six repeats) HV561_07120 PF07977 FabA-like domain HV561_07125 PF00132 Bacterial transferase hexapeptide (six repeats) HV561_07125 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HV561_07135 PF01103 Surface antigen HV561_07135 PF07244 Surface antigen variable number repeat HV561_07140 PF02163 Peptidase family M50 HV561_07150 PF01255 Putative undecaprenyl diphosphate synthase HV561_07155 PF12849 PBP superfamily domain HV561_07160 PF00528 Binding-protein-dependent transport system inner membrane component HV561_07165 PF00528 Binding-protein-dependent transport system inner membrane component HV561_07170 PF00005 ABC transporter HV561_07175 PF00486 Transcriptional regulatory protein, C terminal HV561_07175 PF00072 Response regulator receiver domain HV561_07180 PF00512 His Kinase A (phospho-acceptor) domain HV561_07180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HV561_07185 PF00753 Metallo-beta-lactamase superfamily HV561_07185 PF16123 Hydroxyacylglutathione hydrolase C-terminus HV561_07195 PF02542 YgbB family HV561_07200 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HV561_07205 PF04977 Septum formation initiator HV561_07210 PF01293 Phosphoenolpyruvate carboxykinase HV561_07215 PF04055 Radical SAM superfamily HV561_07215 PF06968 Biotin and Thiamin Synthesis associated domain HV561_07220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HV561_07225 PF00270 DEAD/DEAH box helicase HV561_07225 PF00271 Helicase conserved C-terminal domain HV561_07225 PF03880 DbpA RNA binding domain HV561_07235 PF03725 3' exoribonuclease family, domain 2 HV561_07235 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HV561_07235 PF01138 3' exoribonuclease family, domain 1 HV561_07235 PF00575 S1 RNA binding domain HV561_07235 PF00013 KH domain HV561_07240 PF00521 DNA gyrase/topoisomerase IV, subunit A HV561_07240 PF03989 DNA gyrase C-terminal domain, beta-propeller HV561_07250 PF17193 MukF C-terminal domain HV561_07250 PF17192 MukF middle domain HV561_07250 PF03882 MukF winged-helix domain HV561_07255 PF03595 Voltage-dependent anion channel HV561_07260 PF04288 MukE-like family HV561_07270 PF06414 Zeta toxin HV561_07275 PF16330 MukB hinge domain HV561_07275 PF04310 MukB N-terminal HV561_07280 PF00884 Sulfatase HV561_07280 PF11893 Domain of unknown function (DUF3413) HV561_07285 PF07208 Protein of unknown function (DUF1414) HV561_07290 PF00440 Bacterial regulatory proteins, tetR family HV561_07295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HV561_07300 PF00873 AcrB/AcrD/AcrF family HV561_07305 PF00571 CBS domain HV561_07305 PF00478 IMP dehydrogenase / GMP reductase domain HV561_07310 PF00117 Glutamine amidotransferase class-I HV561_07310 PF02540 NAD synthase HV561_07310 PF00958 GMP synthase C terminal domain HV561_07315 PF12804 MobA-like NTP transferase domain HV561_07315 PF00132 Bacterial transferase hexapeptide (six repeats) HV561_07320 PF01699 Sodium/calcium exchanger protein HV561_07325 PF01728 FtsJ-like methyltransferase HV561_07330 PF06480 FtsH Extracellular HV561_07330 PF01434 Peptidase family M41 HV561_07330 PF17862 AAA+ lid domain HV561_07330 PF00004 ATPase family associated with various cellular activities (AAA) HV561_07335 PF00155 Aminotransferase class I and II HV561_07340 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HV561_07345 PF08239 Bacterial SH3 domain HV561_07350 PF01384 Phosphate transporter family HV561_07355 PF01865 Protein of unknown function DUF47 HV561_07360 PF03796 DnaB-like helicase C terminal domain HV561_07360 PF00772 DnaB-like helicase N terminal domain HV561_07365 PF05166 YcgL domain HV561_07370 PF03477 ATP cone domain HV561_07375 PF03883 Peroxide stress protein YaaA HV561_07385 PF01545 Cation efflux family HV561_07385 PF16916 Dimerisation domain of Zinc Transporter HV561_07390 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HV561_07395 PF00375 Sodium:dicarboxylate symporter family HV561_07400 PF00881 Nitroreductase family HV561_07405 PF01409 tRNA synthetases class II core domain (F) HV561_07405 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HV561_07410 PF03483 B3/4 domain HV561_07410 PF01588 Putative tRNA binding domain HV561_07410 PF03484 tRNA synthetase B5 domain HV561_07410 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HV561_07410 PF03147 Ferredoxin-fold anticodon binding domain HV561_07415 PF00216 Bacterial DNA-binding protein HV561_07420 PF00877 NlpC/P60 family HV561_07425 PF13180 PDZ domain HV561_07430 PF02224 Cytidylate kinase HV561_07435 PF00575 S1 RNA binding domain HV561_07440 PF00216 Bacterial DNA-binding protein HV561_07445 PF06305 Lipopolysaccharide assembly protein A domain HV561_07450 PF18073 Rubredoxin metal binding domain HV561_07455 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HV561_07460 PF01253 Translation initiation factor SUI1 HV561_07465 PF02872 5'-nucleotidase, C-terminal domain HV561_07465 PF00149 Calcineurin-like phosphoesterase HV561_07470 PF01219 Prokaryotic diacylglycerol kinase HV561_07475 PF00375 Sodium:dicarboxylate symporter family HV561_07480 PF03772 Competence protein HV561_07480 PF00753 Metallo-beta-lactamase superfamily HV561_07480 PF13567 Domain of unknown function (DUF4131) HV561_07490 PF06226 Protein of unknown function (DUF1007) HV561_07495 PF03824 High-affinity nickel-transport protein HV561_07500 PF01235 Sodium:alanine symporter family HV561_07505 PF00549 CoA-ligase HV561_07505 PF02629 CoA binding domain HV561_07510 PF00549 CoA-ligase HV561_07510 PF08442 ATP-grasp domain HV561_07515 PF02817 e3 binding domain HV561_07515 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HV561_07515 PF00364 Biotin-requiring enzyme HV561_07520 PF16078 2-oxoglutarate dehydrogenase N-terminus HV561_07520 PF16870 2-oxoglutarate dehydrogenase C-terminal HV561_07520 PF00676 Dehydrogenase E1 component HV561_07520 PF02779 Transketolase, pyrimidine binding domain HV561_07525 PF00005 ABC transporter HV561_07530 PF01551 Peptidase family M23 HV561_07530 PF04225 Opacity-associated protein A LysM-like domain HV561_07535 PF13098 Thioredoxin-like domain HV561_07535 PF10411 Disulfide bond isomerase protein N-terminus HV561_07545 PF17768 RecJ OB domain HV561_07545 PF02272 DHHA1 domain HV561_07545 PF01368 DHH family HV561_07550 PF04355 SmpA / OmlA family HV561_07550 PF00691 OmpA family HV561_07560 PF07730 Histidine kinase HV561_07560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HV561_07560 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HV561_07560 PF00672 HAMP domain HV561_07570 PF01725 Ham1 family HV561_07575 PF01906 Putative heavy-metal-binding HV561_07580 PF03692 Putative zinc- or iron-chelating domain HV561_07585 PF13580 SIS domain HV561_07590 PF18024 Helix-turn-helix domain HV561_07590 PF00158 Sigma-54 interaction domain HV561_07595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HV561_07600 PF00528 Binding-protein-dependent transport system inner membrane component HV561_07605 PF00528 Binding-protein-dependent transport system inner membrane component HV561_07605 PF12911 N-terminal TM domain of oligopeptide transport permease C HV561_07610 PF00005 ABC transporter HV561_07610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HV561_07615 PF07119 Protein of unknown function (DUF1375) HV561_07620 PF00180 Isocitrate/isopropylmalate dehydrogenase HV561_07625 PF13396 Phospholipase_D-nuclease N-terminal HV561_07625 PF13091 PLD-like domain HV561_07630 PF03372 Endonuclease/Exonuclease/phosphatase family HV561_07635 PF01641 SelR domain HV561_07640 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HV561_07640 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HV561_07650 PF02578 Multi-copper polyphenol oxidoreductase laccase HV561_07655 PF01042 Endoribonuclease L-PSP HV561_07660 PF04245 37-kD nucleoid-associated bacterial protein HV561_07665 PF04355 SmpA / OmlA family HV561_07670 PF00665 Integrase core domain HV561_07670 PF13276 HTH-like domain HV561_07670 PF13333 Integrase core domain HV561_07680 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HV561_07680 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HV561_07685 PF00749 tRNA synthetases class I (E and Q), catalytic domain HV561_07685 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HV561_07700 PF01751 Toprim domain HV561_07700 PF01396 Topoisomerase DNA binding C4 zinc finger HV561_07700 PF08272 Topoisomerase I zinc-ribbon-like HV561_07700 PF01131 DNA topoisomerase HV561_07705 PF01594 AI-2E family transporter HV561_07710 PF03889 Alternative ribosome-rescue factor A HV561_07720 PF00480 ROK family HV561_07720 PF01047 MarR family HV561_07725 PF01612 3'-5' exonuclease HV561_07725 PF00570 HRDC domain HV561_07730 PF01037 Lrp/AsnC ligand binding domain HV561_07735 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HV561_07735 PF17854 FtsK alpha domain HV561_07735 PF09397 Ftsk gamma domain HV561_07735 PF01580 FtsK/SpoIIIE family HV561_07740 PF04228 Putative neutral zinc metallopeptidase HV561_07745 PF00793 DAHP synthetase I family HV561_07750 PF00814 Glycoprotease family HV561_07755 PF00265 Thymidine kinase HV561_07760 PF06005 Cell division protein ZapB HV561_07765 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HV561_07770 PF01381 Helix-turn-helix HV561_07775 PF05195 Aminopeptidase P, N-terminal domain HV561_07775 PF00557 Metallopeptidase family M24 HV561_07780 PF00583 Acetyltransferase (GNAT) family HV561_07780 PF00696 Amino acid kinase family HV561_07785 PF10369 Small subunit of acetolactate synthase HV561_07790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HV561_07790 PF00205 Thiamine pyrophosphate enzyme, central domain HV561_07790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HV561_07795 PF00484 Carbonic anhydrase HV561_07800 PF07085 DRTGG domain HV561_07800 PF01515 Phosphate acetyl/butaryl transferase HV561_07805 PF00871 Acetokinase family HV561_07810 PF00149 Calcineurin-like phosphoesterase HV561_07810 PF02872 5'-nucleotidase, C-terminal domain HV561_07815 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HV561_07825 PF01053 Cys/Met metabolism PLP-dependent enzyme HV561_07830 PF01113 Dihydrodipicolinate reductase, N-terminus HV561_07830 PF05173 Dihydrodipicolinate reductase, C-terminus HV561_07835 PF18125 RlmM ferredoxin-like domain HV561_07835 PF01728 FtsJ-like methyltransferase HV561_07840 PF04241 Protein of unknown function (DUF423) HV561_07845 PF00384 Molybdopterin oxidoreductase HV561_07845 PF01568 Molydopterin dinucleotide binding domain HV561_07845 PF18364 Molybdopterin oxidoreductase N-terminal domain HV561_07850 PF06434 Aconitate hydratase 2 N-terminus HV561_07850 PF00330 Aconitase family (aconitate hydratase) HV561_07850 PF11791 Aconitate B N-terminal domain HV561_07855 PF00180 Isocitrate/isopropylmalate dehydrogenase HV561_07860 PF00285 Citrate synthase, C-terminal domain HV561_07865 PF00266 Aminotransferase class-V HV561_07870 PF13609 Gram-negative porin HV561_07880 PF00483 Nucleotidyl transferase HV561_07885 PF02599 Global regulator protein family HV561_07890 PF02272 DHHA1 domain HV561_07890 PF01411 tRNA synthetases class II (A) HV561_07890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HV561_07895 PF00582 Universal stress protein family HV561_07900 PF00027 Cyclic nucleotide-binding domain HV561_07900 PF00325 Bacterial regulatory proteins, crp family HV561_07910 PF00575 S1 RNA binding domain HV561_07910 PF08206 Ribonuclease B OB domain HV561_07910 PF00773 RNB domain HV561_07915 PF00149 Calcineurin-like phosphoesterase HV561_07925 PF00589 Phage integrase family HV561_07955 PF00436 Single-strand binding protein family HV561_08075 PF03406 Phage tail fibre repeat HV561_08155 PF01258 Prokaryotic dksA/traR C4-type zinc finger HV561_08210 PF09335 SNARE associated Golgi protein HV561_08215 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HV561_08215 PF00356 Bacterial regulatory proteins, lacI family HV561_08220 PF13649 Methyltransferase domain HV561_08225 PF00561 alpha/beta hydrolase fold HV561_08230 PF17206 SeqA protein N-terminal domain HV561_08230 PF03925 SeqA protein C-terminal domain HV561_08235 PF00501 AMP-binding enzyme HV561_08240 PF00924 Mechanosensitive ion channel HV561_08240 PF12794 Mechanosensitive ion channel inner membrane domain 1 HV561_08240 PF12795 Mechanosensitive ion channel porin domain HV561_08245 PF01264 Chorismate synthase HV561_08250 PF03411 Penicillin-insensitive murein endopeptidase HV561_08255 PF01131 DNA topoisomerase HV561_08255 PF01751 Toprim domain HV561_08260 PF03840 Preprotein translocase SecG subunit HV561_08275 PF00156 Phosphoribosyl transferase domain HV561_08280 PF01523 Putative modulator of DNA gyrase HV561_08285 PF04751 Protein of unknown function (DUF615) HV561_08290 PF04247 Invasion gene expression up-regulator, SirB HV561_08295 PF02441 Flavoprotein HV561_08310 PF01814 Hemerythrin HHE cation binding domain HV561_08315 PF01702 Queuine tRNA-ribosyltransferase HV561_08325 PF00313 'Cold-shock' DNA-binding domain HV561_08330 PF01380 SIS domain HV561_08330 PF01418 Helix-turn-helix domain, rpiR family HV561_08335 PF04074 YhcH/YjgK/YiaL HV561_08340 PF02541 Ppx/GppA phosphatase family HV561_08345 PF04363 Protein of unknown function (DUF496) HV561_08350 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HV561_08350 PF02378 Phosphotransferase system, EIIC HV561_08350 PF00367 phosphotransferase system, EIIB HV561_08355 PF01842 ACT domain HV561_08355 PF00696 Amino acid kinase family HV561_08365 PF00380 Ribosomal protein S9/S16 HV561_08370 PF00572 Ribosomal protein L13 HV561_08375 PF06295 Protein of unknown function (DUF1043) HV561_08380 PF08335 GlnD PII-uridylyltransferase HV561_08380 PF01966 HD domain HV561_08385 PF01699 Sodium/calcium exchanger protein HV561_08390 PF00384 Molybdopterin oxidoreductase HV561_08390 PF18364 Molybdopterin oxidoreductase N-terminal domain HV561_08390 PF01568 Molydopterin dinucleotide binding domain HV561_08395 PF03264 NapC/NirT cytochrome c family, N-terminal region HV561_08400 PF17874 MalT-like TPR region HV561_08400 PF00196 Bacterial regulatory proteins, luxR family HV561_08405 PF06463 Molybdenum Cofactor Synthesis C HV561_08405 PF04055 Radical SAM superfamily HV561_08410 PF01967 MoaC family HV561_08415 PF02597 ThiS family HV561_08420 PF02391 MoaE protein HV561_08425 PF02130 Uncharacterized protein family UPF0054 HV561_08440 PF17176 tRNA-binding domain HV561_08440 PF05127 Helicase HV561_08440 PF13718 GNAT acetyltransferase 2 HV561_08445 PF00155 Aminotransferase class I and II HV561_08450 PF08245 Mur ligase middle domain HV561_08455 PF17848 Acetyl-coA carboxylase zinc finger domain HV561_08455 PF01039 Carboxyl transferase domain HV561_08460 PF03819 MazG nucleotide pyrophosphohydrolase domain HV561_08465 PF00486 Transcriptional regulatory protein, C terminal HV561_08465 PF00072 Response regulator receiver domain HV561_08470 PF00512 His Kinase A (phospho-acceptor) domain HV561_08470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HV561_08470 PF00672 HAMP domain HV561_08470 PF16527 Two-component sensor protein CpxA, periplasmic domain HV561_08475 PF01784 NIF3 (NGG1p interacting factor 3) HV561_08480 PF00892 EamA-like transporter family HV561_08485 PF01026 TatD related DNase HV561_08490 PF00271 Helicase conserved C-terminal domain HV561_08490 PF04851 Type III restriction enzyme, res subunit HV561_08490 PF12344 Ultra-violet resistance protein B HV561_08490 PF17757 UvrB interaction domain HV561_08490 PF02151 UvrB/uvrC motif HV561_08495 PF09375 Imelysin HV561_08500 PF04261 Dyp-type peroxidase family HV561_08500 PF10518 TAT (twin-arginine translocation) pathway signal sequence HV561_08505 PF02811 PHP domain HV561_08515 PF00929 Exonuclease HV561_08515 PF08411 Exonuclease C-terminal HV561_08520 PF01336 OB-fold nucleic acid binding domain HV561_08520 PF00152 tRNA synthetases class II (D, K and N) HV561_08525 PF04055 Radical SAM superfamily HV561_08535 PF01132 Elongation factor P (EF-P) OB domain HV561_08535 PF09285 Elongation factor P, C-terminal HV561_08535 PF08207 Elongation factor P (EF-P) KOW-like domain HV561_08540 PF04386 Stringent starvation protein B HV561_08545 PF00043 Glutathione S-transferase, C-terminal domain HV561_08545 PF02798 Glutathione S-transferase, N-terminal domain HV561_08550 PF00731 AIR carboxylase HV561_08555 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HV561_08555 PF02222 ATP-grasp domain HV561_08560 PF02547 Queuosine biosynthesis protein HV561_08620 PF04221 RelB antitoxin HV561_08660 PF00574 Clp protease HV561_08705 PF00959 Phage lysozyme HV561_08740 PF07102 Protein of unknown function (DUF1364) HV561_08745 PF04221 RelB antitoxin HV561_08750 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HV561_08755 PF02498 BRO family, N-terminal domain HV561_08755 PF10548 P22AR C-terminal domain HV561_08785 PF01381 Helix-turn-helix HV561_08790 PF00717 Peptidase S24-like HV561_08790 PF01381 Helix-turn-helix HV561_08810 PF07411 Domain of unknown function (DUF1508) HV561_08855 PF00069 Protein kinase domain HV561_08865 PF10548 P22AR C-terminal domain HV561_08865 PF02498 BRO family, N-terminal domain HV561_08935 PF02498 BRO family, N-terminal domain HV561_08935 PF10548 P22AR C-terminal domain HV561_08950 PF01386 Ribosomal L25p family HV561_08955 PF18030 RimK PreATP-grasp domain HV561_08955 PF08443 RimK-like ATP-grasp domain HV561_08965 PF00912 Transglycosylase HV561_08970 PF01371 Trp repressor protein HV561_08975 PF03548 Outer membrane lipoprotein carrier protein LolA HV561_08980 PF01367 5'-3' exonuclease, C-terminal SAM fold HV561_08980 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HV561_08980 PF00476 DNA polymerase family A HV561_08980 PF01612 3'-5' exonuclease HV561_08985 PF06097 Bacterial protein of unknown function (DUF945) HV561_08990 PF00290 Tryptophan synthase alpha chain HV561_08995 PF00291 Pyridoxal-phosphate dependent enzyme HV561_09000 PF00106 short chain dehydrogenase HV561_09005 PF03553 Na+/H+ antiporter family HV561_09010 PF00816 H-NS histone family HV561_09015 PF01842 ACT domain HV561_09015 PF00551 Formyl transferase HV561_09020 PF00561 alpha/beta hydrolase fold HV561_09025 PF01336 OB-fold nucleic acid binding domain HV561_09025 PF00152 tRNA synthetases class II (D, K and N) HV561_09030 PF10150 Ribonuclease E/G family HV561_09030 PF00575 S1 RNA binding domain HV561_09035 PF13333 Integrase core domain HV561_09035 PF13276 HTH-like domain HV561_09035 PF00665 Integrase core domain HV561_09045 PF08003 Protein of unknown function (DUF1698) HV561_09050 PF18381 YcaO cyclodehydratase C-terminal domain HV561_09050 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HV561_09085 PF01867 CRISPR associated protein Cas1 HV561_09090 PF09827 CRISPR associated protein Cas2 HV561_09105 PF00204 DNA gyrase B HV561_09105 PF01751 Toprim domain HV561_09105 PF00986 DNA gyrase B subunit, carboxyl terminus HV561_09105 PF18053 DNA gyrase B subunit insert domain HV561_09105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HV561_09110 PF01040 UbiA prenyltransferase family HV561_09115 PF08220 DeoR-like helix-turn-helix domain HV561_09115 PF00455 DeoR C terminal sensor domain HV561_09120 PF00206 Lyase HV561_09120 PF08328 Adenylosuccinate lyase C-terminal HV561_09125 PF04356 Protein of unknown function (DUF489) HV561_09130 PF00005 ABC transporter HV561_09130 PF00664 ABC transporter transmembrane region HV561_09135 PF00005 ABC transporter HV561_09135 PF00664 ABC transporter transmembrane region HV561_09140 PF04357 TamB, inner membrane protein subunit of TAM complex HV561_09145 PF01103 Surface antigen HV561_09145 PF17243 POTRA domain TamA domain 1 HV561_09150 PF04748 Divergent polysaccharide deacetylase HV561_09155 PF01551 Peptidase family M23 HV561_09160 PF00300 Histidine phosphatase superfamily (branch 1) HV561_09165 PF01765 Ribosome recycling factor HV561_09170 PF00696 Amino acid kinase family HV561_09175 PF00889 Elongation factor TS HV561_09180 PF00318 Ribosomal protein S2 HV561_09195 PF00005 ABC transporter HV561_09195 PF08402 TOBE domain HV561_09200 PF01323 DSBA-like thioredoxin domain HV561_09205 PF05872 Bacterial protein of unknown function (DUF853) HV561_09210 PF00270 DEAD/DEAH box helicase HV561_09210 PF00271 Helicase conserved C-terminal domain HV561_09215 PF02565 Recombination protein O C terminal HV561_09215 PF11967 Recombination protein O N terminal HV561_09220 PF07650 KH domain HV561_09220 PF01926 50S ribosome-binding GTPase HV561_09225 PF14622 Ribonuclease-III-like HV561_09225 PF00035 Double-stranded RNA binding motif HV561_09230 PF10502 Signal peptidase, peptidase S26 HV561_09235 PF00009 Elongation factor Tu GTP binding domain HV561_09235 PF06421 GTP-binding protein LepA C-terminus HV561_09235 PF00679 Elongation factor G C-terminus HV561_09235 PF03144 Elongation factor Tu domain 2 HV561_09240 PF00266 Aminotransferase class-V HV561_09265 PF07681 DoxX HV561_09275 PF05114 Protein of unknown function (DUF692) HV561_09280 PF09836 Putative DNA-binding domain HV561_09285 PF04542 Sigma-70 region 2 HV561_09285 PF08281 Sigma-70, region 4 HV561_09295 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HV561_09300 PF01979 Amidohydrolase family HV561_09305 PF01546 Peptidase family M20/M25/M40 HV561_09315 PF02652 L-lactate permease HV561_09320 PF00696 Amino acid kinase family HV561_09325 PF06545 Protein of unknown function (DUF1116) HV561_09330 PF02615 Malate/L-lactate dehydrogenase HV561_09335 PF05899 Protein of unknown function (DUF861) HV561_09335 PF07883 Cupin domain HV561_09345 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HV561_09350 PF01979 Amidohydrolase family HV561_09355 PF11392 Protein of unknown function (DUF2877) HV561_09365 PF13742 OB-fold nucleic acid binding domain HV561_09365 PF02601 Exonuclease VII, large subunit HV561_09375 PF03562 MltA specific insert domain HV561_09375 PF06725 3D domain HV561_09380 PF00156 Phosphoribosyl transferase domain HV561_09385 PF02674 Colicin V production protein HV561_09390 PF00075 RNase H HV561_09395 PF00764 Arginosuccinate synthase HV561_09410 PF06940 Domain of unknown function (DUF1287) HV561_09415 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HV561_09420 PF00535 Glycosyl transferase family 2 HV561_09425 PF01985 CRS1 / YhbY (CRM) domain HV561_09430 PF01569 PAP2 superfamily HV561_09435 PF00480 ROK family HV561_09440 PF00884 Sulfatase HV561_09445 PF00111 2Fe-2S iron-sulfur cluster binding domain HV561_09445 PF03476 MOSC N-terminal beta barrel domain HV561_09445 PF03473 MOSC domain HV561_09450 PF02609 Exonuclease VII small subunit HV561_09455 PF00348 Polyprenyl synthetase HV561_09460 PF13230 Glutamine amidotransferases class-II HV561_09465 PF00950 ABC 3 transport family HV561_09470 PF16193 AAA C-terminal domain HV561_09470 PF12002 MgsA AAA+ ATPase C terminal HV561_09470 PF00004 ATPase family associated with various cellular activities (AAA) HV561_09475 PF04093 rod shape-determining protein MreD HV561_09480 PF04085 rod shape-determining protein MreC HV561_09490 PF01810 LysE type translocator HV561_09495 PF00485 Phosphoribulokinase / Uridine kinase family HV561_09500 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HV561_09505 PF02233 NAD(P) transhydrogenase beta subunit HV561_09510 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HV561_09510 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HV561_09510 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HV561_09515 PF00588 SpoU rRNA Methylase family HV561_09520 PF04011 LemA family HV561_09535 PF00311 Phosphoenolpyruvate carboxylase HV561_09540 PF04453 LPS transport system D HV561_09540 PF03968 OstA-like protein HV561_09545 PF04055 Radical SAM superfamily HV561_09545 PF06969 HemN C-terminal domain HV561_09555 PF04220 Der GTPase activator (YihI) HV561_09560 PF06062 Uncharacterised protein family (UPF0231) HV561_09565 PF03710 Glutamate-ammonia ligase adenylyltransferase HV561_09565 PF08335 GlnD PII-uridylyltransferase HV561_09570 PF03795 YCII-related domain HV561_09575 PF03061 Thioesterase superfamily HV561_09580 PF04279 Intracellular septation protein A HV561_09590 PF04217 Protein of unknown function, DUF412 HV561_09600 PF00899 ThiF family HV561_09605 PF03453 MoeA N-terminal region (domain I and II) HV561_09605 PF00994 Probable molybdopterin binding domain HV561_09605 PF03454 MoeA C-terminal region (domain IV) HV561_09610 PF01914 MarC family integral membrane protein HV561_09615 PF13173 AAA domain HV561_09615 PF13635 Domain of unknown function (DUF4143) HV561_09620 PF12848 ABC transporter HV561_09620 PF00005 ABC transporter HV561_09630 PF00849 RNA pseudouridylate synthase HV561_09635 PF00300 Histidine phosphatase superfamily (branch 1) HV561_09640 PF05128 Domain of unknown function (DUF697) HV561_09645 PF01207 Dihydrouridine synthase (Dus) HV561_09655 PF00226 DnaJ domain HV561_09655 PF05099 Tellurite resistance protein TerB HV561_09660 PF00691 OmpA family HV561_09665 PF04052 TolB amino-terminal domain HV561_09665 PF07676 WD40-like Beta Propeller Repeat HV561_09670 PF06519 TolA C-terminal HV561_09675 PF02472 Biopolymer transport protein ExbD/TolR HV561_09680 PF01618 MotA/TolQ/ExbB proton channel family HV561_09685 PF03061 Thioesterase superfamily HV561_09700 PF02322 Cytochrome bd terminal oxidase subunit II HV561_09705 PF01654 Cytochrome bd terminal oxidase subunit I HV561_09715 PF00118 TCP-1/cpn60 chaperonin family HV561_09720 PF00166 Chaperonin 10 Kd subunit HV561_09725 PF08267 Cobalamin-independent synthase, N-terminal domain HV561_09725 PF01717 Cobalamin-independent synthase, Catalytic domain HV561_09730 PF00293 NUDIX domain HV561_09735 PF02810 SEC-C motif HV561_09735 PF07517 SecA DEAD-like domain HV561_09735 PF01043 SecA preprotein cross-linking domain HV561_09735 PF07516 SecA Wing and Scaffold domain HV561_09760 PF01722 BolA-like protein HV561_09770 PF04452 RNA methyltransferase HV561_09775 PF02622 Uncharacterized ACR, COG1678 HV561_09780 PF03652 Holliday junction resolvase HV561_09785 PF01594 AI-2E family transporter HV561_09790 PF01235 Sodium:alanine symporter family HV561_09795 PF00565 Staphylococcal nuclease homologue HV561_09800 PF03412 Peptidase C39 family HV561_09800 PF00664 ABC transporter transmembrane region HV561_09800 PF00005 ABC transporter HV561_09805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HV561_09805 PF00529 HlyD membrane-fusion protein of T1SS HV561_09820 PF00266 Aminotransferase class-V HV561_09825 PF00365 Phosphofructokinase HV561_09830 PF14256 YwiC-like protein HV561_09840 PF01479 S4 domain HV561_09840 PF00849 RNA pseudouridylate synthase HV561_09845 PF13525 Outer membrane lipoprotein HV561_09850 PF00814 Glycoprotease family HV561_09855 PF01491 Frataxin-like domain HV561_09860 PF00270 DEAD/DEAH box helicase HV561_09860 PF00271 Helicase conserved C-terminal domain HV561_09860 PF00570 HRDC domain HV561_09860 PF16124 RecQ zinc-binding HV561_09860 PF09382 RQC domain HV561_09865 PF00707 Translation initiation factor IF-3, C-terminal domain HV561_09865 PF05198 Translation initiation factor IF-3, N-terminal domain HV561_09870 PF01632 Ribosomal protein L35 HV561_09875 PF00453 Ribosomal protein L20 HV561_09885 PF02627 Carboxymuconolactone decarboxylase family HV561_09890 PF12833 Helix-turn-helix domain HV561_09890 PF12852 Cupin HV561_09895 PF01184 GPR1/FUN34/yaaH family HV561_09905 PF00717 Peptidase S24-like HV561_09905 PF01726 LexA DNA binding domain HV561_09910 PF02976 DNA mismatch repair enzyme MutH HV561_09915 PF03741 Integral membrane protein TerC family HV561_09920 PF00933 Glycosyl hydrolase family 3 N terminal domain HV561_09925 PF05958 tRNA (Uracil-5-)-methyltransferase HV561_09930 PF00113 Enolase, C-terminal TIM barrel domain HV561_09930 PF03952 Enolase, N-terminal domain HV561_09935 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) HV561_09940 PF01494 FAD binding domain HV561_09945 PF00293 NUDIX domain HV561_09970 PF01758 Sodium Bile acid symporter family HV561_09975 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HV561_09980 PF00883 Cytosol aminopeptidase family, catalytic domain HV561_09980 PF12404 Peptidase HV561_09985 PF03449 Transcription elongation factor, N-terminal HV561_09985 PF01272 Transcription elongation factor, GreA/GreB, C-term HV561_09990 PF13361 UvrD-like helicase C-terminal domain HV561_09990 PF00580 UvrD/REP helicase N-terminal domain HV561_09990 PF12705 PD-(D/E)XK nuclease superfamily HV561_09995 PF13609 Gram-negative porin HV561_10000 PF01554 MatE HV561_10005 PF13416 Bacterial extracellular solute-binding protein HV561_10010 PF01025 GrpE HV561_10015 PF04284 Protein of unknown function (DUF441) HV561_10020 PF00271 Helicase conserved C-terminal domain HV561_10020 PF04408 Helicase associated domain (HA2) HV561_10020 PF11898 Domain of unknown function (DUF3418) HV561_10020 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HV561_10020 PF00270 DEAD/DEAH box helicase HV561_10025 PF04393 Protein of unknown function (DUF535) HV561_10035 PF01145 SPFH domain / Band 7 family HV561_10035 PF16200 C-terminal region of band_7 HV561_10040 PF03167 Uracil DNA glycosylase superfamily HV561_10045 PF01228 Glycine radical HV561_10050 PF00717 Peptidase S24-like HV561_10055 PF00877 NlpC/P60 family HV561_10060 PF01261 Xylose isomerase-like TIM barrel HV561_10075 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HV561_10080 PF00571 CBS domain HV561_10080 PF03471 Transporter associated domain HV561_10085 PF00795 Carbon-nitrogen hydrolase HV561_10090 PF00885 6,7-dimethyl-8-ribityllumazine synthase HV561_10095 PF00925 GTP cyclohydrolase II HV561_10095 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HV561_10100 PF00677 Lumazine binding domain HV561_10105 PF01872 RibD C-terminal domain HV561_10105 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HV561_10110 PF02190 ATP-dependent protease La (LON) substrate-binding domain HV561_10110 PF05362 Lon protease (S16) C-terminal proteolytic domain HV561_10110 PF00004 ATPase family associated with various cellular activities (AAA) HV561_10115 PF03466 LysR substrate binding domain HV561_10115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HV561_10130 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HV561_10150 PF01197 Ribosomal protein L31 HV561_10155 PF00456 Transketolase, thiamine diphosphate binding domain HV561_10155 PF02779 Transketolase, pyrimidine binding domain HV561_10155 PF02780 Transketolase, C-terminal domain HV561_10160 PF02562 PhoH-like protein HV561_10165 PF07840 FadR C-terminal domain HV561_10165 PF00392 Bacterial regulatory proteins, gntR family HV561_10170 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HV561_10175 PF02600 Disulfide bond formation protein DsbB HV561_10180 PF01053 Cys/Met metabolism PLP-dependent enzyme HV561_10185 PF00156 Phosphoribosyl transferase domain HV561_10190 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HV561_10195 PF01510 N-acetylmuramoyl-L-alanine amidase HV561_10200 PF00849 RNA pseudouridylate synthase HV561_10205 PF12137 RNA polymerase recycling family C-terminal HV561_10205 PF00176 SNF2 family N-terminal domain HV561_10205 PF18339 RapA N-terminal Tudor like domain 1 HV561_10205 PF18337 RapA N-terminal Tudor like domain HV561_10205 PF00271 Helicase conserved C-terminal domain HV561_10215 PF01966 HD domain HV561_10215 PF13286 Phosphohydrolase-associated domain HV561_10220 PF05958 tRNA (Uracil-5-)-methyltransferase HV561_10220 PF01938 TRAM domain HV561_10225 PF07690 Major Facilitator Superfamily HV561_10230 PF00849 RNA pseudouridylate synthase HV561_10230 PF01479 S4 domain HV561_10235 PF13378 Enolase C-terminal domain-like HV561_10240 PF09334 tRNA synthetases class I (M) HV561_10240 PF08264 Anticodon-binding domain of tRNA HV561_10240 PF01588 Putative tRNA binding domain HV561_10245 PF00334 Nucleoside diphosphate kinase HV561_10250 PF03449 Transcription elongation factor, N-terminal HV561_10250 PF01272 Transcription elongation factor, GreA/GreB, C-term HV561_10260 PF02142 MGS-like domain HV561_10260 PF01808 AICARFT/IMPCHase bienzyme HV561_10265 PF00701 Dihydrodipicolinate synthetase family HV561_10270 PF03279 Bacterial lipid A biosynthesis acyltransferase HV561_10275 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HV561_10280 PF02926 THUMP domain HV561_10280 PF02568 Thiamine biosynthesis protein (ThiI) HV561_10285 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HV561_10285 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HV561_10310 PF07992 Pyridine nucleotide-disulphide oxidoreductase HV561_10310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HV561_10315 PF02817 e3 binding domain HV561_10315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HV561_10315 PF00364 Biotin-requiring enzyme HV561_10320 PF00456 Transketolase, thiamine diphosphate binding domain HV561_10320 PF17831 Pyruvate dehydrogenase E1 component middle domain HV561_10325 PF01180 Dihydroorotate dehydrogenase HV561_10330 PF14572 Phosphoribosyl synthetase-associated domain HV561_10330 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HV561_10335 PF08544 GHMP kinases C terminal HV561_10335 PF00288 GHMP kinases N terminal domain HV561_10340 PF03550 Outer membrane lipoprotein LolB HV561_10345 PF00664 ABC transporter transmembrane region HV561_10345 PF00005 ABC transporter HV561_10350 PF13307 Helicase C-terminal domain HV561_10350 PF06733 DEAD_2 HV561_10355 PF00005 ABC transporter HV561_10365 PF17755 UvrA DNA-binding domain HV561_10365 PF17760 UvrA interaction domain HV561_10370 PF00436 Single-strand binding protein family HV561_10455 PF04829 Pre-toxin domain with VENN motif HV561_10455 PF05860 haemagglutination activity domain HV561_10455 PF13332 Hemagglutinin repeat HV561_10480 PF13332 Hemagglutinin repeat HV561_10480 PF04829 Pre-toxin domain with VENN motif HV561_10480 PF05860 haemagglutination activity domain HV561_10480 PF05594 Haemagluttinin repeat HV561_10495 PF05860 haemagglutination activity domain HV561_10495 PF13332 Hemagglutinin repeat HV561_10495 PF04829 Pre-toxin domain with VENN motif HV561_10510 PF08479 POTRA domain, ShlB-type HV561_10510 PF17287 POTRA domain HV561_10510 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HV561_10515 PF02447 GntP family permease HV561_10520 PF01202 Shikimate kinase HV561_10525 PF00356 Bacterial regulatory proteins, lacI family HV561_10525 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HV561_10530 PF01595 Cyclin M transmembrane N-terminal domain HV561_10530 PF03471 Transporter associated domain HV561_10530 PF00571 CBS domain HV561_10535 PF13406 Transglycosylase SLT domain HV561_10540 PF16198 tRNA pseudouridylate synthase B C-terminal domain HV561_10540 PF09157 Pseudouridine synthase II TruB, C-terminal HV561_10540 PF01509 TruB family pseudouridylate synthase (N terminal domain) HV561_10545 PF02033 Ribosome-binding factor A HV561_10550 PF00009 Elongation factor Tu GTP binding domain HV561_10550 PF11987 Translation-initiation factor 2 HV561_10550 PF04760 Translation initiation factor IF-2, N-terminal region HV561_10555 PF00575 S1 RNA binding domain HV561_10555 PF08529 NusA N-terminal domain HV561_10555 PF13184 NusA-like KH domain HV561_10560 PF17384 RimP C-terminal SH3 domain HV561_10560 PF02576 RimP N-terminal domain HV561_10570 PF01464 Transglycosylase SLT domain HV561_10570 PF14718 Soluble lytic murein transglycosylase L domain HV561_10575 PF00709 Adenylosuccinate synthetase HV561_10580 PF01145 SPFH domain / Band 7 family HV561_10585 PF01145 SPFH domain / Band 7 family HV561_10590 PF13018 Extended Signal Peptide of Type V secretion system HV561_10590 PF03895 YadA-like membrane anchor domain HV561_10590 PF05658 Head domain of trimeric autotransporter adhesin HV561_10590 PF05662 Coiled stalk of trimeric autotransporter adhesin HV561_10595 PF17283 SprT-like zinc ribbon domain HV561_10595 PF10263 SprT-like family HV561_10600 PF00445 Ribonuclease T2 family HV561_10610 PF00438 S-adenosylmethionine synthetase, N-terminal domain HV561_10610 PF02773 S-adenosylmethionine synthetase, C-terminal domain HV561_10610 PF02772 S-adenosylmethionine synthetase, central domain HV561_10640 PF13538 UvrD-like helicase C-terminal domain HV561_10645 PF01168 Alanine racemase, N-terminal domain HV561_10645 PF00842 Alanine racemase, C-terminal domain HV561_10650 PF12833 Helix-turn-helix domain HV561_10650 PF02311 AraC-like ligand binding domain HV561_10655 PF04976 DMSO reductase anchor subunit (DmsC) HV561_10660 PF13247 4Fe-4S dicluster domain HV561_10660 PF12800 4Fe-4S binding domain HV561_10665 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HV561_10665 PF01568 Molydopterin dinucleotide binding domain HV561_10665 PF00384 Molybdopterin oxidoreductase HV561_10670 PF02613 Nitrate reductase delta subunit HV561_10675 PF03895 YadA-like membrane anchor domain HV561_10675 PF13018 Extended Signal Peptide of Type V secretion system HV561_10675 PF05658 Head domain of trimeric autotransporter adhesin HV561_10675 PF05662 Coiled stalk of trimeric autotransporter adhesin HV561_10680 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HV561_10680 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HV561_10685 PF00696 Amino acid kinase family HV561_10685 PF00742 Homoserine dehydrogenase HV561_10685 PF03447 Homoserine dehydrogenase, NAD binding domain HV561_10685 PF01842 ACT domain HV561_10685 PF13840 ACT domain HV561_10690 PF00288 GHMP kinases N terminal domain HV561_10690 PF08544 GHMP kinases C terminal HV561_10695 PF00291 Pyridoxal-phosphate dependent enzyme HV561_10700 PF07498 Rho termination factor, N-terminal domain HV561_10700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HV561_10700 PF07497 Rho termination factor, RNA-binding domain HV561_10705 PF00037 4Fe-4S binding domain HV561_10705 PF12838 4Fe-4S dicluster domain HV561_10710 PF00202 Aminotransferase class-III HV561_10715 PF00696 Amino acid kinase family HV561_10720 PF01118 Semialdehyde dehydrogenase, NAD binding domain HV561_10725 PF01048 Phosphorylase superfamily HV561_10730 PF01791 DeoC/LacD family aldolase HV561_10735 PF01773 Na+ dependent nucleoside transporter N-terminus HV561_10735 PF07670 Nucleoside recognition HV561_10735 PF07662 Na+ dependent nucleoside transporter C-terminus HV561_10740 PF08534 Redoxin HV561_10740 PF01625 Peptide methionine sulfoxide reductase HV561_10740 PF01641 SelR domain HV561_10745 PF00535 Glycosyl transferase family 2 HV561_10750 PF00535 Glycosyl transferase family 2 HV561_10760 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HV561_10765 PF07922 Glycosyltransferase family 52 HV561_10770 PF01943 Polysaccharide biosynthesis protein HV561_10775 PF02348 Cytidylyltransferase HV561_10775 PF13472 GDSL-like Lipase/Acylhydrolase family HV561_10780 PF02698 DUF218 domain HV561_10785 PF00270 DEAD/DEAH box helicase HV561_10785 PF18074 Primosomal protein N C-terminal domain HV561_10785 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HV561_10785 PF17764 3′ DNA-binding domain (3′BD) HV561_10785 PF00271 Helicase conserved C-terminal domain HV561_10790 PF00155 Aminotransferase class I and II HV561_10795 PF00425 chorismate binding enzyme HV561_10800 PF06508 Queuosine biosynthesis protein QueC HV561_10805 PF04380 Membrane fusogenic activity HV561_10810 PF00342 Phosphoglucose isomerase HV561_10815 PF00528 Binding-protein-dependent transport system inner membrane component HV561_10820 PF00528 Binding-protein-dependent transport system inner membrane component HV561_10825 PF00497 Bacterial extracellular solute-binding proteins, family 3 HV561_10830 PF00005 ABC transporter HV561_10835 PF02683 Cytochrome C biogenesis protein transmembrane region HV561_10835 PF11412 Disulphide bond corrector protein DsbC HV561_10835 PF13098 Thioredoxin-like domain HV561_10840 PF04315 Elongation factor P hydroxylase HV561_10845 PF01063 Amino-transferase class IV HV561_10850 PF00462 Glutaredoxin HV561_10855 PF13662 Toprim domain HV561_10855 PF02132 RecR protein HV561_10860 PF02575 YbaB/EbfC DNA-binding family HV561_10865 PF02463 RecF/RecN/SMC N terminal domain HV561_10870 PF01024 Colicin pore forming domain HV561_10870 PF11504 Colicin Ia HV561_10875 PF02153 Prephenate dehydrogenase HV561_10875 PF01817 Chorismate mutase type II HV561_10880 PF00793 DAHP synthetase I family HV561_10885 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HV561_10890 PF02887 Pyruvate kinase, alpha/beta domain HV561_10890 PF00224 Pyruvate kinase, barrel domain HV561_10895 PF00300 Histidine phosphatase superfamily (branch 1) HV561_10900 PF01207 Dihydrouridine synthase (Dus) HV561_10905 PF02954 Bacterial regulatory protein, Fis family HV561_10910 PF00593 TonB dependent receptor HV561_10910 PF07715 TonB-dependent Receptor Plug Domain HV561_10915 PF17484 N-Lobe handle Tf-binding protein B HV561_10915 PF17483 C-lobe handle domain of Tf-binding protein B HV561_10915 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B HV561_10920 PF00929 Exonuclease HV561_10925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HV561_10935 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HV561_10940 PF12627 Probable RNA and SrmB- binding site of polymerase A HV561_10940 PF12626 Polymerase A arginine-rich C-terminus HV561_10940 PF01743 Poly A polymerase head domain HV561_10945 PF01258 Prokaryotic dksA/traR C4-type zinc finger HV561_10960 PF02321 Outer membrane efflux protein HV561_10965 PF00625 Guanylate kinase HV561_10970 PF00156 Phosphoribosyl transferase domain HV561_10985 PF07687 Peptidase dimerisation domain HV561_10985 PF01546 Peptidase family M20/M25/M40 HV561_10990 PF03279 Bacterial lipid A biosynthesis acyltransferase HV561_10995 PF02508 Rnf-Nqr subunit, membrane protein HV561_11000 PF04205 FMN-binding domain HV561_11005 PF03116 NQR2, RnfD, RnfE family HV561_11010 PF03458 UPF0126 domain HV561_11015 PF13375 RnfC Barrel sandwich hybrid domain HV561_11015 PF12838 4Fe-4S dicluster domain HV561_11015 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HV561_11020 PF04060 Putative Fe-S cluster HV561_11025 PF02508 Rnf-Nqr subunit, membrane protein HV561_11030 PF00005 ABC transporter HV561_11030 PF12848 ABC transporter HV561_11040 PF00929 Exonuclease HV561_11045 PF01281 Ribosomal protein L9, N-terminal domain HV561_11045 PF03948 Ribosomal protein L9, C-terminal domain HV561_11050 PF01084 Ribosomal protein S18 HV561_11055 PF00436 Single-strand binding protein family HV561_11060 PF01250 Ribosomal protein S6 HV561_11065 PF02844 Phosphoribosylglycinamide synthetase, N domain HV561_11065 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HV561_11065 PF02843 Phosphoribosylglycinamide synthetase, C domain HV561_11070 PF04973 Nicotinamide mononucleotide transporter HV561_11080 PF04354 ZipA, C-terminal FtsZ-binding domain HV561_11085 PF01653 NAD-dependent DNA ligase adenylation domain HV561_11085 PF03120 NAD-dependent DNA ligase OB-fold domain HV561_11085 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HV561_11085 PF00533 BRCA1 C Terminus (BRCT) domain HV561_11085 PF12826 Helix-hairpin-helix motif HV561_11090 PF01370 NAD dependent epimerase/dehydratase family HV561_11095 PF02219 Methylenetetrahydrofolate reductase HV561_11100 PF07690 Major Facilitator Superfamily HV561_11105 PF05191 Adenylate kinase, active site lid HV561_11110 PF16036 Chalcone isomerase-like HV561_11115 PF00580 UvrD/REP helicase N-terminal domain HV561_11115 PF13361 UvrD-like helicase C-terminal domain HV561_11120 PF08338 Domain of unknown function (DUF1731) HV561_11120 PF01370 NAD dependent epimerase/dehydratase family HV561_11125 PF02863 Arginine repressor, C-terminal domain HV561_11125 PF01316 Arginine repressor, DNA binding domain HV561_11130 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HV561_11130 PF00056 lactate/malate dehydrogenase, NAD binding domain HV561_11145 PF04461 Protein of unknown function (DUF520) HV561_11150 PF18429 Domain of unknown function (DUF5609) HV561_11155 PF10144 Bacterial virulence factor haemolysin HV561_11160 PF01176 Translation initiation factor 1A / IF-1 HV561_11170 PF00860 Permease family HV561_11180 PF01402 Ribbon-helix-helix protein, copG family HV561_11185 PF00258 Flavodoxin HV561_11190 PF01475 Ferric uptake regulator family HV561_11195 PF02470 MlaD protein HV561_11200 PF02664 S-Ribosylhomocysteinase (LuxS) HV561_11205 PF00664 ABC transporter transmembrane region HV561_11205 PF00005 ABC transporter HV561_11210 PF03432 Relaxase/Mobilisation nuclease domain HV561_11225 PF07690 Major Facilitator Superfamily HV561_11230 PF00440 Bacterial regulatory proteins, tetR family HV561_11230 PF02909 Tetracyclin repressor-like, C-terminal domain HV561_11250 PF00809 Pterin binding enzyme HV561_11255 PF00302 Chloramphenicol acetyltransferase HV561_11260 PF01636 Phosphotransferase enzyme family HV561_11270 PF03432 Relaxase/Mobilisation nuclease domain HV561_11275 PF00809 Pterin binding enzyme HV561_11280 PF00302 Chloramphenicol acetyltransferase HV561_11285 PF01636 Phosphotransferase enzyme family HV561_11295 PF03432 Relaxase/Mobilisation nuclease domain