locus-tag class description JDM601_0001 PF08299 Bacterial dnaA protein helix-turn-helix JDM601_0001 PF00308 Bacterial dnaA protein JDM601_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain JDM601_0002 PF02767 DNA polymerase III beta subunit, central domain JDM601_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain JDM601_0003 PF02463 RecF/RecN/SMC N terminal domain JDM601_0004 PF05258 Dna[CI] antecedent, DciA JDM601_0005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_0005 PF00986 DNA gyrase B subunit, carboxyl terminus JDM601_0005 PF00204 DNA gyrase B JDM601_0005 PF01751 Toprim domain JDM601_0006 PF14528 LAGLIDADG-like domain JDM601_0006 PF00521 DNA gyrase/topoisomerase IV, subunit A JDM601_0006 PF03989 DNA gyrase C-terminal domain, beta-propeller JDM601_0007 PF12089 Transmembrane domain of unknown function (DUF3566) JDM601_0009 PF10814 Cell wall synthesis protein CwsA JDM601_0010 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JDM601_0011 PF10756 Bacterial PH domain JDM601_0012 PF06781 Cell division protein CrgA JDM601_0014 PF03793 PASTA domain JDM601_0014 PF00069 Protein kinase domain JDM601_0015 PF00117 Glutamine amidotransferase class-I JDM601_0016 PF00069 Protein kinase domain JDM601_0017 PF00905 Penicillin binding protein transpeptidase domain JDM601_0018 PF01098 Cell cycle protein JDM601_0020 PF16697 Inner membrane component of T3SS, cytoplasmic domain JDM601_0021 PF12401 Protein of unknown function (DUF2662) JDM601_0021 PF00498 FHA domain JDM601_0026 PF03989 DNA gyrase C-terminal domain, beta-propeller JDM601_0026 PF00521 DNA gyrase/topoisomerase IV, subunit A JDM601_0027 PF00204 DNA gyrase B JDM601_0027 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_0027 PF01751 Toprim domain JDM601_0027 PF00986 DNA gyrase B subunit, carboxyl terminus JDM601_0028 PF00440 Bacterial regulatory proteins, tetR family JDM601_0030 PF12146 Serine aminopeptidase, S33 JDM601_0031 PF00501 AMP-binding enzyme JDM601_0031 PF13193 AMP-binding enzyme C-terminal domain JDM601_0033 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_0033 PF00107 Zinc-binding dehydrogenase JDM601_0036 PF05726 Pirin C-terminal cupin domain JDM601_0036 PF02678 Pirin JDM601_0038 PF02467 Transcription factor WhiB JDM601_0039 PF01381 Helix-turn-helix JDM601_0040 PF00877 NlpC/P60 family JDM601_0042 PF10824 Excreted virulence factor EspC, type VII ESX diderm JDM601_0044 PF10904 Protein of unknown function (DUF2694) JDM601_0045 PF18646 Family of unknown function (DUF5632) JDM601_0045 PF18645 Family of unknown function (DUF5631) JDM601_0046 PF10921 Protein of unknown function (DUF2710) JDM601_0047 PF00004 ATPase family associated with various cellular activities (AAA) JDM601_0047 PF17866 AAA lid domain JDM601_0048 PF11203 Putative type VII ESX secretion system translocon, EccE JDM601_0049 PF00082 Subtilase family JDM601_0050 PF08817 WXG100 protein secretion system (Wss), protein YukD JDM601_0052 PF14011 EspG family JDM601_0053 PF06013 Proteins of 100 residues with WXG JDM601_0054 PF06013 Proteins of 100 residues with WXG JDM601_0055 PF00823 PPE family JDM601_0057 PF01580 FtsK/SpoIIIE family JDM601_0058 PF05108 Type VII secretion system ESX-1, transport TM domain B JDM601_0064 PF18646 Family of unknown function (DUF5632) JDM601_0064 PF18645 Family of unknown function (DUF5631) JDM601_0066 PF14032 PknH-like extracellular domain JDM601_0066 PF00069 Protein kinase domain JDM601_0067 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JDM601_0070 PF03060 Nitronate monooxygenase JDM601_0075 PF00175 Oxidoreductase NAD-binding domain JDM601_0075 PF00970 Oxidoreductase FAD-binding domain JDM601_0075 PF00111 2Fe-2S iron-sulfur cluster binding domain JDM601_0076 PF00487 Fatty acid desaturase JDM601_0079 PF00067 Cytochrome P450 JDM601_0081 PF01625 Peptide methionine sulfoxide reductase JDM601_0082 PF00067 Cytochrome P450 JDM601_0088 PF01370 NAD dependent epimerase/dehydratase family JDM601_0094 PF04072 Leucine carboxyl methyltransferase JDM601_0095 PF00171 Aldehyde dehydrogenase family JDM601_0096 PF00106 short chain dehydrogenase JDM601_0099 PF00440 Bacterial regulatory proteins, tetR family JDM601_0099 PF08362 YcdC-like protein, C-terminal region JDM601_0100 PF02720 Domain of unknown function (DUF222) JDM601_0101 PF12146 Serine aminopeptidase, S33 JDM601_0102 PF02913 FAD linked oxidases, C-terminal domain JDM601_0102 PF01565 FAD binding domain JDM601_0103 PF00440 Bacterial regulatory proteins, tetR family JDM601_0111 PF00067 Cytochrome P450 JDM601_0112 PF00107 Zinc-binding dehydrogenase JDM601_0112 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_0113 PF03328 HpcH/HpaI aldolase/citrate lyase family JDM601_0115 PF00107 Zinc-binding dehydrogenase JDM601_0115 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_0116 PF00743 Flavin-binding monooxygenase-like JDM601_0119 PF00501 AMP-binding enzyme JDM601_0119 PF13193 AMP-binding enzyme C-terminal domain JDM601_0121 PF02405 Permease MlaE JDM601_0126 PF02470 MlaD protein JDM601_0129 PF06271 RDD family JDM601_0141 PF02405 Permease MlaE JDM601_0146 PF17954 Quercetinase C-terminal cupin domain JDM601_0146 PF02678 Pirin JDM601_0149 PF00107 Zinc-binding dehydrogenase JDM601_0149 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_0151 PF12146 Serine aminopeptidase, S33 JDM601_0155 PF01152 Bacterial-like globin JDM601_0156 PF00920 Dehydratase family JDM601_0158 PF02583 Metal-sensitive transcriptional repressor JDM601_0160 PF03734 L,D-transpeptidase catalytic domain JDM601_0160 PF17964 Bacterial Ig domain JDM601_0161 PF01431 Peptidase family M13 JDM601_0161 PF05649 Peptidase family M13 JDM601_0165 PF03176 MMPL family JDM601_0168 PF03176 MMPL family JDM601_0169 PF01594 AI-2E family transporter JDM601_0171 PF02390 Putative methyltransferase JDM601_0174 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain JDM601_0174 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain JDM601_0178 PF13193 AMP-binding enzyme C-terminal domain JDM601_0178 PF00501 AMP-binding enzyme JDM601_0180 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_0180 PF00934 PE family JDM601_0181 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0181 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0181 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0183 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0183 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0183 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0184 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0184 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0184 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0185 PF07859 alpha/beta hydrolase fold JDM601_0187 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JDM601_0187 PF06974 Protein of unknown function (DUF1298) JDM601_0188 PF00501 AMP-binding enzyme JDM601_0188 PF13193 AMP-binding enzyme C-terminal domain JDM601_0190 PF00797 N-acetyltransferase JDM601_0191 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0191 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0191 PF12806 Acetyl-CoA dehydrogenase C-terminal like JDM601_0191 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0194 PF00171 Aldehyde dehydrogenase family JDM601_0195 PF08241 Methyltransferase domain JDM601_0197 PF04134 Protein of unknown function, DUF393 JDM601_0198 PF02720 Domain of unknown function (DUF222) JDM601_0202 PF00510 Cytochrome c oxidase subunit III JDM601_0204 PF11271 Porin PorA JDM601_0205 PF01757 Acyltransferase family JDM601_0210 PF02126 Phosphotriesterase family JDM601_0211 PF01047 MarR family JDM601_0213 PF03358 NADPH-dependent FMN reductase JDM601_0214 PF00440 Bacterial regulatory proteins, tetR family JDM601_0214 PF17932 Tetracyclin repressor-like, C-terminal domain JDM601_0215 PF00268 Ribonucleotide reductase, small chain JDM601_0216 PF00171 Aldehyde dehydrogenase family JDM601_0218 PF11847 Alpha-(1->3)-arabinofuranosyltransferase JDM601_0219 PF11021 Protein of unknown function (DUF2613) JDM601_0220 PF00933 Glycosyl hydrolase family 3 N terminal domain JDM601_0226 PF00108 Thiolase, N-terminal domain JDM601_0226 PF02803 Thiolase, C-terminal domain JDM601_0227 PF01965 DJ-1/PfpI family JDM601_0228 PF01965 DJ-1/PfpI family JDM601_0228 PF12833 Helix-turn-helix domain JDM601_0229 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0229 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0229 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0229 PF12806 Acetyl-CoA dehydrogenase C-terminal like JDM601_0230 PF01613 Flavin reductase like domain JDM601_0231 PF00459 Inositol monophosphatase family JDM601_0232 PF00248 Aldo/keto reductase family JDM601_0233 PF00248 Aldo/keto reductase family JDM601_0234 PF13183 4Fe-4S dicluster domain JDM601_0234 PF13085 2Fe-2S iron-sulfur cluster binding domain JDM601_0235 PF00890 FAD binding domain JDM601_0235 PF02910 Fumarate reductase flavoprotein C-term JDM601_0239 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JDM601_0239 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JDM601_0239 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_0239 PF13806 Rieske-like [2Fe-2S] domain JDM601_0239 PF04324 BFD-like [2Fe-2S] binding domain JDM601_0239 PF18267 Rubredoxin NAD+ reductase C-terminal domain JDM601_0241 PF13806 Rieske-like [2Fe-2S] domain JDM601_0242 PF07690 Major Facilitator Superfamily JDM601_0245 PF07690 Major Facilitator Superfamily JDM601_0248 PF02626 Carboxyltransferase domain, subdomain A and B JDM601_0251 PF01968 Hydantoinase/oxoprolinase JDM601_0251 PF05378 Hydantoinase/oxoprolinase N-terminal region JDM601_0253 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0253 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0253 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0256 PF13193 AMP-binding enzyme C-terminal domain JDM601_0256 PF00501 AMP-binding enzyme JDM601_0257 PF04679 ATP dependent DNA ligase C terminal region JDM601_0257 PF13298 DNA polymerase Ligase (LigD) JDM601_0257 PF01068 ATP dependent DNA ligase domain JDM601_0258 PF13193 AMP-binding enzyme C-terminal domain JDM601_0258 PF00501 AMP-binding enzyme JDM601_0260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0260 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0261 PF01842 ACT domain JDM601_0261 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JDM601_0261 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JDM601_0264 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JDM601_0266 PF09107 Elongation factor SelB, winged helix JDM601_0266 PF00009 Elongation factor Tu GTP binding domain JDM601_0266 PF03144 Elongation factor Tu domain 2 JDM601_0266 PF09106 Elongation factor SelB, winged helix JDM601_0266 PF09105 Elongation factor SelB, winged helix JDM601_0267 PF12390 Selenocysteine synthase N terminal JDM601_0267 PF03841 L-seryl-tRNA selenium transferase JDM601_0268 PF02769 AIR synthase related protein, C-terminal domain JDM601_0268 PF00586 AIR synthase related protein, N-terminal domain JDM601_0270 PF09957 Bacterial antitoxin of type II TA system, VapB JDM601_0272 PF01979 Amidohydrolase family JDM601_0272 PF00449 Urease alpha-subunit, N-terminal domain JDM601_0273 PF00699 Urease beta subunit JDM601_0273 PF00547 Urease, gamma subunit JDM601_0274 PF00547 Urease, gamma subunit JDM601_0276 PF09163 Formate dehydrogenase N, transmembrane JDM601_0276 PF13247 4Fe-4S dicluster domain JDM601_0277 PF00384 Molybdopterin oxidoreductase JDM601_0277 PF01568 Molydopterin dinucleotide binding domain JDM601_0277 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JDM601_0278 PF01568 Molydopterin dinucleotide binding domain JDM601_0278 PF00384 Molybdopterin oxidoreductase JDM601_0278 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JDM601_0279 PF02634 FdhD/NarQ family JDM601_0285 PF00934 PE family JDM601_0286 PF00823 PPE family JDM601_0288 PF06013 Proteins of 100 residues with WXG JDM601_0289 PF04072 Leucine carboxyl methyltransferase JDM601_0290 PF17866 AAA lid domain JDM601_0290 PF00004 ATPase family associated with various cellular activities (AAA) JDM601_0291 PF05108 Type VII secretion system ESX-1, transport TM domain B JDM601_0292 PF01580 FtsK/SpoIIIE family JDM601_0293 PF00934 PE family JDM601_0294 PF00823 PPE family JDM601_0296 PF06013 Proteins of 100 residues with WXG JDM601_0297 PF14011 EspG family JDM601_0298 PF08817 WXG100 protein secretion system (Wss), protein YukD JDM601_0299 PF00082 Subtilase family JDM601_0300 PF11203 Putative type VII ESX secretion system translocon, EccE JDM601_0303 PF00881 Nitroreductase family JDM601_0305 PF01569 PAP2 superfamily JDM601_0310 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_0310 PF00823 PPE family JDM601_0311 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_0311 PF00823 PPE family JDM601_0316 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) JDM601_0322 PF00692 dUTPase JDM601_0327 PF00483 Nucleotidyl transferase JDM601_0330 PF02665 Nitrate reductase gamma subunit JDM601_0330 PF13183 4Fe-4S dicluster domain JDM601_0330 PF02754 Cysteine-rich domain JDM601_0336 PF00324 Amino acid permease JDM601_0337 PF00067 Cytochrome P450 JDM601_0338 PF00012 Hsp70 protein JDM601_0339 PF01025 GrpE JDM601_0340 PF00226 DnaJ domain JDM601_0340 PF00684 DnaJ central domain JDM601_0340 PF01556 DnaJ C terminal domain JDM601_0341 PF13411 MerR HTH family regulatory protein JDM601_0343 PF00111 2Fe-2S iron-sulfur cluster binding domain JDM601_0343 PF00970 Oxidoreductase FAD-binding domain JDM601_0343 PF00175 Oxidoreductase NAD-binding domain JDM601_0346 PF17871 AAA lid domain JDM601_0346 PF07724 AAA domain (Cdc48 subfamily) JDM601_0346 PF10431 C-terminal, D2-small domain, of ClpB protein JDM601_0346 PF02861 Clp amino terminal domain, pathogenicity island component JDM601_0346 PF00004 ATPase family associated with various cellular activities (AAA) JDM601_0351 PF00156 Phosphoribosyl transferase domain JDM601_0353 PF08032 RNA 2'-O ribose methyltransferase substrate binding JDM601_0353 PF00588 SpoU rRNA Methylase family JDM601_0356 PF09335 SNARE associated Golgi protein JDM601_0357 PF01116 Fructose-bisphosphate aldolase class-II JDM601_0360 PF01545 Cation efflux family JDM601_0363 PF00709 Adenylosuccinate synthetase JDM601_0366 PF00999 Sodium/hydrogen exchanger family JDM601_0367 PF02222 ATP-grasp domain JDM601_0367 PF01370 NAD dependent epimerase/dehydratase family JDM601_0368 PF00581 Rhodanese-like domain JDM601_0369 PF01053 Cys/Met metabolism PLP-dependent enzyme JDM601_0372 PF00501 AMP-binding enzyme JDM601_0372 PF13193 AMP-binding enzyme C-terminal domain JDM601_0375 PF00999 Sodium/hydrogen exchanger family JDM601_0375 PF03471 Transporter associated domain JDM601_0376 PF02080 TrkA-C domain JDM601_0376 PF02254 TrkA-N domain JDM601_0377 PF04072 Leucine carboxyl methyltransferase JDM601_0379 PF17770 Ribonuclease J C-terminal domain JDM601_0379 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JDM601_0379 PF12706 Beta-lactamase superfamily domain JDM601_0380 PF00296 Luciferase-like monooxygenase JDM601_0381 PF16918 Protein kinase G tetratricopeptide repeat JDM601_0381 PF16919 Protein kinase G rubredoxin domain JDM601_0381 PF00069 Protein kinase domain JDM601_0382 PF00497 Bacterial extracellular solute-binding proteins, family 3 JDM601_0384 PF00293 NUDIX domain JDM601_0385 PF02581 Thiamine monophosphate synthase JDM601_0386 PF01266 FAD dependent oxidoreductase JDM601_0388 PF05690 Thiazole biosynthesis protein ThiG JDM601_0390 PF02225 PA domain JDM601_0390 PF04389 Peptidase family M28 JDM601_0391 PF00440 Bacterial regulatory proteins, tetR family JDM601_0392 PF00743 Flavin-binding monooxygenase-like JDM601_0394 PF08543 Phosphomethylpyrimidine kinase JDM601_0395 PF01964 Radical SAM ThiC family JDM601_0395 PF13667 ThiC-associated domain JDM601_0399 PF00689 Cation transporting ATPase, C-terminus JDM601_0403 PF01327 Polypeptide deformylase JDM601_0406 PF00080 Copper/zinc superoxide dismutase (SODC) JDM601_0407 PF04107 Glutamate-cysteine ligase family 2(GCS2) JDM601_0408 PF02190 ATP-dependent protease La (LON) substrate-binding domain JDM601_0408 PF00004 ATPase family associated with various cellular activities (AAA) JDM601_0408 PF05362 Lon protease (S16) C-terminal proteolytic domain JDM601_0411 PF00067 Cytochrome P450 JDM601_0412 PF00171 Aldehyde dehydrogenase family JDM601_0413 PF00171 Aldehyde dehydrogenase family JDM601_0417 PF00440 Bacterial regulatory proteins, tetR family JDM601_0417 PF16859 Tetracyclin repressor-like, C-terminal domain JDM601_0418 PF01434 Peptidase family M41 JDM601_0418 PF00004 ATPase family associated with various cellular activities (AAA) JDM601_0418 PF17862 AAA+ lid domain JDM601_0419 PF01817 Chorismate mutase type II JDM601_0420 PF01066 CDP-alcohol phosphatidyltransferase JDM601_0421 PF02666 Phosphatidylserine decarboxylase JDM601_0422 PF03453 MoeA N-terminal region (domain I and II) JDM601_0422 PF03454 MoeA C-terminal region (domain IV) JDM601_0422 PF00994 Probable molybdopterin binding domain JDM601_0426 PF04851 Type III restriction enzyme, res subunit JDM601_0428 PF00106 short chain dehydrogenase JDM601_0431 PF00118 TCP-1/cpn60 chaperonin family JDM601_0435 PF00248 Aldo/keto reductase family JDM601_0437 PF07969 Amidohydrolase family JDM601_0437 PF07969 Amidohydrolase family JDM601_0440 PF00171 Aldehyde dehydrogenase family JDM601_0443 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JDM601_0443 PF00326 Prolyl oligopeptidase family JDM601_0444 PF00171 Aldehyde dehydrogenase family JDM601_0450 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JDM601_0450 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_0455 PF09856 Predicted transcriptional regulator (DUF2083) JDM601_0455 PF06114 IrrE N-terminal-like domain JDM601_0455 PF01381 Helix-turn-helix JDM601_0456 PF01643 Acyl-ACP thioesterase JDM601_0458 PF00463 Isocitrate lyase family JDM601_0459 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JDM601_0459 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JDM601_0460 PF00440 Bacterial regulatory proteins, tetR family JDM601_0461 PF04286 Protein of unknown function (DUF445) JDM601_0462 PF01381 Helix-turn-helix JDM601_0464 PF10724 Protein of unknown function (DUF2516) JDM601_0465 PF10783 Protein of unknown function (DUF2599) JDM601_0466 PF01791 DeoC/LacD family aldolase JDM601_0467 PF11209 Protein of unknown function (DUF2993) JDM601_0468 PF11209 Protein of unknown function (DUF2993) JDM601_0469 PF00795 Carbon-nitrogen hydrolase JDM601_0471 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JDM601_0471 PF01565 FAD binding domain JDM601_0472 PF00106 short chain dehydrogenase JDM601_0473 PF03734 L,D-transpeptidase catalytic domain JDM601_0473 PF17964 Bacterial Ig domain JDM601_0474 PF00480 ROK family JDM601_0475 PF00534 Glycosyl transferases group 1 JDM601_0475 PF13439 Glycosyltransferase Family 4 JDM601_0476 PF10722 Putative bacterial sensory transduction regulator JDM601_0477 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_0478 PF00512 His Kinase A (phospho-acceptor) domain JDM601_0478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_0479 PF00486 Transcriptional regulatory protein, C terminal JDM601_0479 PF00072 Response regulator receiver domain JDM601_0480 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_0480 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_0480 PF08659 KR domain JDM601_0480 PF00698 Acyl transferase domain JDM601_0480 PF14765 Polyketide synthase dehydratase JDM601_0480 PF00550 Phosphopantetheine attachment site JDM601_0480 PF16197 Ketoacyl-synthetase C-terminal extension JDM601_0481 PF00501 AMP-binding enzyme JDM601_0481 PF13193 AMP-binding enzyme C-terminal domain JDM601_0481 PF00668 Condensation domain JDM601_0481 PF00550 Phosphopantetheine attachment site JDM601_0482 PF01370 NAD dependent epimerase/dehydratase family JDM601_0483 PF02720 Domain of unknown function (DUF222) JDM601_0485 PF01425 Amidase JDM601_0487 PF01565 FAD binding domain JDM601_0487 PF08031 Berberine and berberine like JDM601_0489 PF12704 MacB-like periplasmic core domain JDM601_0489 PF00005 ABC transporter JDM601_0489 PF02687 FtsX-like permease family JDM601_0491 PF02541 Ppx/GppA phosphatase family JDM601_0493 PF01261 Xylose isomerase-like TIM barrel JDM601_0495 PF03807 NADP oxidoreductase coenzyme F420-dependent JDM601_0495 PF14748 Pyrroline-5-carboxylate reductase dimerisation JDM601_0496 PF12728 Helix-turn-helix domain JDM601_0498 PF01370 NAD dependent epimerase/dehydratase family JDM601_0499 PF01553 Acyltransferase JDM601_0500 PF13452 N-terminal half of MaoC dehydratase JDM601_0503 PF05768 Glutaredoxin-like domain (DUF836) JDM601_0504 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JDM601_0504 PF01488 Shikimate / quinate 5-dehydrogenase JDM601_0504 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JDM601_0505 PF03900 Porphobilinogen deaminase, C-terminal domain JDM601_0505 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JDM601_0507 PF00490 Delta-aminolevulinic acid dehydratase JDM601_0509 PF14791 DNA polymerase beta thumb JDM601_0509 PF14716 Helix-hairpin-helix domain JDM601_0509 PF02811 PHP domain JDM601_0512 PF00403 Heavy-metal-associated domain JDM601_0514 PF00027 Cyclic nucleotide-binding domain JDM601_0514 PF00005 ABC transporter JDM601_0516 PF00823 PPE family JDM601_0516 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_0517 PF00823 PPE family JDM601_0522 PF00202 Aminotransferase class-III JDM601_0523 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_0525 PF02683 Cytochrome C biogenesis protein transmembrane region JDM601_0527 PF01578 Cytochrome C assembly protein JDM601_0528 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JDM601_0531 PF01040 UbiA prenyltransferase family JDM601_0533 PF01048 Phosphorylase superfamily JDM601_0535 PF00501 AMP-binding enzyme JDM601_0535 PF13193 AMP-binding enzyme C-terminal domain JDM601_0538 PF01384 Phosphate transporter family JDM601_0540 PF00106 short chain dehydrogenase JDM601_0541 PF00378 Enoyl-CoA hydratase/isomerase JDM601_0542 PF13193 AMP-binding enzyme C-terminal domain JDM601_0542 PF00501 AMP-binding enzyme JDM601_0543 PF06974 Protein of unknown function (DUF1298) JDM601_0543 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JDM601_0545 PF18374 Enolase N-terminal domain-like JDM601_0545 PF13378 Enolase C-terminal domain-like JDM601_0546 PF00296 Luciferase-like monooxygenase JDM601_0548 PF12697 Alpha/beta hydrolase family JDM601_0549 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JDM601_0549 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JDM601_0552 PF01209 ubiE/COQ5 methyltransferase family JDM601_0554 PF13847 Methyltransferase domain JDM601_0555 PF01494 FAD binding domain JDM601_0556 PF00348 Polyprenyl synthetase JDM601_0557 PF00916 Sulfate permease family JDM601_0557 PF01740 STAS domain JDM601_0558 PF01435 Peptidase family M48 JDM601_0559 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JDM601_0559 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JDM601_0560 PF00743 Flavin-binding monooxygenase-like JDM601_0561 PF04461 Protein of unknown function (DUF520) JDM601_0563 PF00069 Protein kinase domain JDM601_0564 PF13847 Methyltransferase domain JDM601_0566 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JDM601_0566 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JDM601_0567 PF10509 Galactokinase galactose-binding signature JDM601_0567 PF00288 GHMP kinases N terminal domain JDM601_0567 PF08544 GHMP kinases C terminal JDM601_0568 PF09957 Bacterial antitoxin of type II TA system, VapB JDM601_0569 PF01850 PIN domain JDM601_0570 PF01494 FAD binding domain JDM601_0574 PF03747 ADP-ribosylglycohydrolase JDM601_0584 PF01850 PIN domain JDM601_0591 PF00149 Calcineurin-like phosphoesterase JDM601_0592 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JDM601_0597 PF00271 Helicase conserved C-terminal domain JDM601_0597 PF00176 SNF2 family N-terminal domain JDM601_0600 PF00271 Helicase conserved C-terminal domain JDM601_0600 PF00270 DEAD/DEAH box helicase JDM601_0600 PF08494 DEAD/H associated JDM601_0601 PF13361 UvrD-like helicase C-terminal domain JDM601_0601 PF00580 UvrD/REP helicase N-terminal domain JDM601_0605 PF13180 PDZ domain JDM601_0610 PF01230 HIT domain JDM601_0611 PF02463 RecF/RecN/SMC N terminal domain JDM601_0614 PF00872 Transposase, Mutator family JDM601_0624 PF12728 Helix-turn-helix domain JDM601_0631 PF07516 SecA Wing and Scaffold domain JDM601_0631 PF01043 SecA preprotein cross-linking domain JDM601_0631 PF07517 SecA DEAD-like domain JDM601_0631 PF02810 SEC-C motif JDM601_0632 PF00149 Calcineurin-like phosphoesterase JDM601_0633 PF00067 Cytochrome P450 JDM601_0639 PF16658 Class II release factor RF3, C-terminal domain JDM601_0639 PF00009 Elongation factor Tu GTP binding domain JDM601_0642 PF13538 UvrD-like helicase C-terminal domain JDM601_0643 PF13361 UvrD-like helicase C-terminal domain JDM601_0643 PF12705 PD-(D/E)XK nuclease superfamily JDM601_0643 PF00580 UvrD/REP helicase N-terminal domain JDM601_0644 PF17946 RecC C-terminal domain JDM601_0645 PF00107 Zinc-binding dehydrogenase JDM601_0645 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_0646 PF00365 Phosphofructokinase JDM601_0650 PF02683 Cytochrome C biogenesis protein transmembrane region JDM601_0651 PF00578 AhpC/TSA family JDM601_0653 PF02560 Cyanate lyase C-terminal domain JDM601_0654 PF01734 Patatin-like phospholipase JDM601_0656 PF16123 Hydroxyacylglutathione hydrolase C-terminus JDM601_0656 PF00753 Metallo-beta-lactamase superfamily JDM601_0657 PF00471 Ribosomal protein L33 JDM601_0658 PF13452 N-terminal half of MaoC dehydratase JDM601_0659 PF01575 MaoC like domain JDM601_0660 PF13452 N-terminal half of MaoC dehydratase JDM601_0661 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JDM601_0662 PF02357 Transcription termination factor nusG JDM601_0663 PF03946 Ribosomal protein L11, N-terminal domain JDM601_0663 PF00298 Ribosomal protein L11, RNA binding domain JDM601_0664 PF00687 Ribosomal protein L1p/L10e family JDM601_0667 PF00561 alpha/beta hydrolase fold JDM601_0668 PF03109 ABC1 family JDM601_0672 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JDM601_0673 PF00480 ROK family JDM601_0677 PF00466 Ribosomal protein L10 JDM601_0678 PF16320 Ribosomal protein L7/L12 dimerisation domain JDM601_0678 PF00542 Ribosomal protein L7/L12 C-terminal domain JDM601_0680 PF03055 Retinal pigment epithelial membrane protein JDM601_0681 PF00005 ABC transporter JDM601_0682 PF04560 RNA polymerase Rpb2, domain 7 JDM601_0682 PF00562 RNA polymerase Rpb2, domain 6 JDM601_0682 PF04563 RNA polymerase beta subunit JDM601_0682 PF04561 RNA polymerase Rpb2, domain 2 JDM601_0682 PF04565 RNA polymerase Rpb2, domain 3 JDM601_0682 PF10385 RNA polymerase beta subunit external 1 domain JDM601_0683 PF04983 RNA polymerase Rpb1, domain 3 JDM601_0683 PF04998 RNA polymerase Rpb1, domain 5 JDM601_0683 PF05000 RNA polymerase Rpb1, domain 4 JDM601_0683 PF00623 RNA polymerase Rpb1, domain 2 JDM601_0683 PF04997 RNA polymerase Rpb1, domain 1 JDM601_0685 PF01261 Xylose isomerase-like TIM barrel JDM601_0687 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0687 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0687 PF18158 Adaptive response protein AidB N-terminal domain JDM601_0688 PF00378 Enoyl-CoA hydratase/isomerase JDM601_0690 PF00378 Enoyl-CoA hydratase/isomerase JDM601_0694 PF00164 Ribosomal protein S12/S23 JDM601_0695 PF00177 Ribosomal protein S7p/S5e JDM601_0696 PF03144 Elongation factor Tu domain 2 JDM601_0696 PF14492 Elongation Factor G, domain II JDM601_0696 PF00009 Elongation factor Tu GTP binding domain JDM601_0696 PF00679 Elongation factor G C-terminus JDM601_0696 PF03764 Elongation factor G, domain IV JDM601_0697 PF00009 Elongation factor Tu GTP binding domain JDM601_0697 PF03144 Elongation factor Tu domain 2 JDM601_0697 PF03143 Elongation factor Tu C-terminal domain JDM601_0700 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_0700 PF14759 Reductase C-terminal JDM601_0703 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0703 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0703 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0706 PF00550 Phosphopantetheine attachment site JDM601_0706 PF08659 KR domain JDM601_0706 PF00698 Acyl transferase domain JDM601_0706 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_0706 PF08990 Erythronolide synthase docking JDM601_0706 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_0706 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_0706 PF14765 Polyketide synthase dehydratase JDM601_0706 PF16197 Ketoacyl-synthetase C-terminal extension JDM601_0707 PF01039 Carboxyl transferase domain JDM601_0709 PF00378 Enoyl-CoA hydratase/isomerase JDM601_0710 PF02405 Permease MlaE JDM601_0711 PF02405 Permease MlaE JDM601_0712 PF02310 B12 binding domain JDM601_0712 PF01642 Methylmalonyl-CoA mutase JDM601_0713 PF02310 B12 binding domain JDM601_0715 PF02515 CoA-transferase family III JDM601_0718 PF02803 Thiolase, C-terminal domain JDM601_0718 PF00108 Thiolase, N-terminal domain JDM601_0721 PF00378 Enoyl-CoA hydratase/isomerase JDM601_0722 PF00501 AMP-binding enzyme JDM601_0722 PF13193 AMP-binding enzyme C-terminal domain JDM601_0723 PF01636 Phosphotransferase enzyme family JDM601_0725 PF13193 AMP-binding enzyme C-terminal domain JDM601_0725 PF00501 AMP-binding enzyme JDM601_0726 PF07702 UTRA domain JDM601_0726 PF00392 Bacterial regulatory proteins, gntR family JDM601_0727 PF08450 SMP-30/Gluconolactonase/LRE-like region JDM601_0729 PF02515 CoA-transferase family III JDM601_0730 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0732 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0732 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0732 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0733 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0733 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0733 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0734 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JDM601_0734 PF00205 Thiamine pyrophosphate enzyme, central domain JDM601_0734 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JDM601_0735 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0736 PF02515 CoA-transferase family III JDM601_0737 PF00378 Enoyl-CoA hydratase/isomerase JDM601_0738 PF00108 Thiolase, N-terminal domain JDM601_0738 PF02803 Thiolase, C-terminal domain JDM601_0739 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0739 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0739 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0743 PF07681 DoxX JDM601_0745 PF13193 AMP-binding enzyme C-terminal domain JDM601_0745 PF00501 AMP-binding enzyme JDM601_0746 PF00378 Enoyl-CoA hydratase/isomerase JDM601_0749 PF04072 Leucine carboxyl methyltransferase JDM601_0753 PF00239 Resolvase, N terminal domain JDM601_0753 PF02796 Helix-turn-helix domain of resolvase JDM601_0757 PF00271 Helicase conserved C-terminal domain JDM601_0757 PF00176 SNF2 family N-terminal domain JDM601_0764 PF00589 Phage integrase family JDM601_0764 PF02899 Phage integrase, N-terminal SAM-like domain JDM601_0765 PF00589 Phage integrase family JDM601_0765 PF02899 Phage integrase, N-terminal SAM-like domain JDM601_0770 PF13683 Integrase core domain JDM601_0770 PF13276 HTH-like domain JDM601_0771 PF01527 Transposase JDM601_0772 PF00271 Helicase conserved C-terminal domain JDM601_0772 PF00176 SNF2 family N-terminal domain JDM601_0782 PF00155 Aminotransferase class I and II JDM601_0784 PF00108 Thiolase, N-terminal domain JDM601_0784 PF02803 Thiolase, C-terminal domain JDM601_0785 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JDM601_0785 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JDM601_0785 PF00378 Enoyl-CoA hydratase/isomerase JDM601_0787 PF08468 Methyltransferase small domain N-terminal JDM601_0787 PF05175 Methyltransferase small domain JDM601_0789 PF04851 Type III restriction enzyme, res subunit JDM601_0789 PF00271 Helicase conserved C-terminal domain JDM601_0792 PF01967 MoaC family JDM601_0793 PF00994 Probable molybdopterin binding domain JDM601_0794 PF02391 MoaE protein JDM601_0795 PF06737 Transglycosylase-like domain JDM601_0795 PF06737 Transglycosylase-like domain JDM601_0797 PF06463 Molybdenum Cofactor Synthesis C JDM601_0797 PF04055 Radical SAM superfamily JDM601_0798 PF00313 'Cold-shock' DNA-binding domain JDM601_0799 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0799 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0799 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0800 PF13409 Glutathione S-transferase, N-terminal domain JDM601_0801 PF10969 Protein of unknown function (DUF2771) JDM601_0802 PF07690 Major Facilitator Superfamily JDM601_0804 PF11228 Protein of unknown function (DUF3027) JDM601_0806 PF10745 Protein of unknown function (DUF2530) JDM601_0807 PF00588 SpoU rRNA Methylase family JDM601_0808 PF11268 Protein of unknown function (DUF3071) JDM601_0809 PF10801 Protein of unknown function (DUF2537) JDM601_0810 PF00266 Aminotransferase class-V JDM601_0811 PF11583 P-aminobenzoate N-oxygenase AurF JDM601_0812 PF00037 4Fe-4S binding domain JDM601_0812 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_0813 PF00285 Citrate synthase, C-terminal domain JDM601_0814 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JDM601_0814 PF01243 Pyridoxamine 5'-phosphate oxidase JDM601_0816 PF00285 Citrate synthase, C-terminal domain JDM601_0817 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JDM601_0819 PF04972 BON domain JDM601_0819 PF00691 OmpA family JDM601_0822 PF00512 His Kinase A (phospho-acceptor) domain JDM601_0822 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_0822 PF00672 HAMP domain JDM601_0823 PF00486 Transcriptional regulatory protein, C terminal JDM601_0823 PF00072 Response regulator receiver domain JDM601_0824 PF00664 ABC transporter transmembrane region JDM601_0824 PF00005 ABC transporter JDM601_0825 PF00005 ABC transporter JDM601_0825 PF00664 ABC transporter transmembrane region JDM601_0826 PF01039 Carboxyl transferase domain JDM601_0828 PF00378 Enoyl-CoA hydratase/isomerase JDM601_0829 PF12706 Beta-lactamase superfamily domain JDM601_0831 PF10604 Polyketide cyclase / dehydrase and lipid transport JDM601_0832 PF00005 ABC transporter JDM601_0833 PF00296 Luciferase-like monooxygenase JDM601_0840 PF01638 HxlR-like helix-turn-helix JDM601_0841 PF01568 Molydopterin dinucleotide binding domain JDM601_0841 PF00384 Molybdopterin oxidoreductase JDM601_0841 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JDM601_0843 PF07804 HipA-like C-terminal domain JDM601_0843 PF13657 HipA N-terminal domain JDM601_0848 PF05199 GMC oxidoreductase JDM601_0849 PF08338 Domain of unknown function (DUF1731) JDM601_0849 PF01370 NAD dependent epimerase/dehydratase family JDM601_0851 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0851 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0851 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0852 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0852 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0852 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0853 PF13193 AMP-binding enzyme C-terminal domain JDM601_0853 PF00501 AMP-binding enzyme JDM601_0854 PF00378 Enoyl-CoA hydratase/isomerase JDM601_0855 PF00440 Bacterial regulatory proteins, tetR family JDM601_0857 PF01022 Bacterial regulatory protein, arsR family JDM601_0858 PF00689 Cation transporting ATPase, C-terminus JDM601_0861 PF00487 Fatty acid desaturase JDM601_0866 PF00174 Oxidoreductase molybdopterin binding domain JDM601_0867 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JDM601_0868 PF02641 Uncharacterized ACR, COG1993 JDM601_0869 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JDM601_0870 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0873 PF03405 Fatty acid desaturase JDM601_0874 PF03358 NADPH-dependent FMN reductase JDM601_0874 PF01566 Natural resistance-associated macrophage protein JDM601_0875 PF05173 Dihydrodipicolinate reductase, C-terminus JDM601_0875 PF01113 Dihydrodipicolinate reductase, N-terminus JDM601_0877 PF02720 Domain of unknown function (DUF222) JDM601_0878 PF00440 Bacterial regulatory proteins, tetR family JDM601_0878 PF16859 Tetracyclin repressor-like, C-terminal domain JDM601_0879 PF05423 Mycobacterium membrane protein JDM601_0880 PF03176 MMPL family JDM601_0881 PF13298 DNA polymerase Ligase (LigD) JDM601_0881 PF04679 ATP dependent DNA ligase C terminal region JDM601_0881 PF01068 ATP dependent DNA ligase domain JDM601_0882 PF00553 Cellulose binding domain JDM601_0882 PF00150 Cellulase (glycosyl hydrolase family 5) JDM601_0884 PF00553 Cellulose binding domain JDM601_0884 PF00150 Cellulase (glycosyl hydrolase family 5) JDM601_0886 PF00296 Luciferase-like monooxygenase JDM601_0887 PF16170 Domain of unknown function (DUF4873) JDM601_0888 PF11583 P-aminobenzoate N-oxygenase AurF JDM601_0889 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV JDM601_0890 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JDM601_0890 PF06827 Zinc finger found in FPG and IleRS JDM601_0891 PF00106 short chain dehydrogenase JDM601_0892 PF00342 Phosphoglucose isomerase JDM601_0893 PF01817 Chorismate mutase type II JDM601_0894 PF00580 UvrD/REP helicase N-terminal domain JDM601_0894 PF13361 UvrD-like helicase C-terminal domain JDM601_0896 PF01551 Peptidase family M23 JDM601_0897 PF00549 CoA-ligase JDM601_0897 PF08442 ATP-grasp domain JDM601_0898 PF02629 CoA binding domain JDM601_0898 PF00549 CoA-ligase JDM601_0900 PF00296 Luciferase-like monooxygenase JDM601_0901 PF17270 Family of unknown function (DUF5336) JDM601_0904 PF00551 Formyl transferase JDM601_0905 PF01808 AICARFT/IMPCHase bienzyme JDM601_0905 PF02142 MGS-like domain JDM601_0906 PF07969 Amidohydrolase family JDM601_0907 PF07859 alpha/beta hydrolase fold JDM601_0908 PF00440 Bacterial regulatory proteins, tetR family JDM601_0909 PF01078 Magnesium chelatase, subunit ChlI JDM601_0909 PF17863 AAA lid domain JDM601_0911 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_0911 PF00823 PPE family JDM601_0912 PF17200 Single Cache domain 2 JDM601_0912 PF07730 Histidine kinase JDM601_0913 PF00072 Response regulator receiver domain JDM601_0913 PF00196 Bacterial regulatory proteins, luxR family JDM601_0914 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JDM601_0914 PF00361 Proton-conducting membrane transporter JDM601_0914 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JDM601_0914 PF13244 Domain of unknown function (DUF4040) JDM601_0918 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JDM601_0922 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) JDM601_0924 PF08044 Domain of unknown function (DUF1707) JDM601_0925 PF00378 Enoyl-CoA hydratase/isomerase JDM601_0926 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0926 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0926 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0927 PF02785 Biotin carboxylase C-terminal domain JDM601_0927 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JDM601_0927 PF00364 Biotin-requiring enzyme JDM601_0927 PF00289 Biotin carboxylase, N-terminal domain JDM601_0928 PF01039 Carboxyl transferase domain JDM601_0929 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_0929 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_0929 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_0931 PF01783 Ribosomal L32p protein family JDM601_0932 PF00072 Response regulator receiver domain JDM601_0932 PF00486 Transcriptional regulatory protein, C terminal JDM601_0933 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_0933 PF00512 His Kinase A (phospho-acceptor) domain JDM601_0933 PF00672 HAMP domain JDM601_0934 PF13180 PDZ domain JDM601_0935 PF01967 MoaC family JDM601_0935 PF00994 Probable molybdopterin binding domain JDM601_0937 PF01741 Large-conductance mechanosensitive channel, MscL JDM601_0940 PF01812 5-formyltetrahydrofolate cyclo-ligase family JDM601_0941 PF00483 Nucleotidyl transferase JDM601_0942 PF03453 MoeA N-terminal region (domain I and II) JDM601_0942 PF03454 MoeA C-terminal region (domain IV) JDM601_0942 PF00994 Probable molybdopterin binding domain JDM601_0948 PF00067 Cytochrome P450 JDM601_0950 PF00440 Bacterial regulatory proteins, tetR family JDM601_0950 PF17926 Tetracyclin repressor-like, C-terminal domain JDM601_0953 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JDM601_0953 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JDM601_0954 PF13302 Acetyltransferase (GNAT) domain JDM601_0954 PF00027 Cyclic nucleotide-binding domain JDM601_0957 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JDM601_0957 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase JDM601_0958 PF00425 chorismate binding enzyme JDM601_0958 PF04715 Anthranilate synthase component I, N terminal region JDM601_0959 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JDM601_0960 PF04542 Sigma-70 region 2 JDM601_0960 PF08281 Sigma-70, region 4 JDM601_0961 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_0961 PF14759 Reductase C-terminal JDM601_0963 PF09334 tRNA synthetases class I (M) JDM601_0964 PF01026 TatD related DNase JDM601_0965 PF06737 Transglycosylase-like domain JDM601_0965 PF07501 G5 domain JDM601_0965 PF03990 G5-linked-Ubiquitin-like domain JDM601_0966 PF00398 Ribosomal RNA adenine dimethylase JDM601_0968 PF00823 PPE family JDM601_0968 PF08237 PE-PPE domain JDM601_0969 PF08544 GHMP kinases C terminal JDM601_0969 PF00288 GHMP kinases N terminal domain JDM601_0970 PF00501 AMP-binding enzyme JDM601_0970 PF14535 AMP-binding enzyme C-terminal domain JDM601_0971 PF01195 Peptidyl-tRNA hydrolase JDM601_0972 PF14693 Ribosomal protein TL5, C-terminal domain JDM601_0972 PF01386 Ribosomal L25p family JDM601_0974 PF14011 EspG family JDM601_0975 PF00106 short chain dehydrogenase JDM601_0978 PF10738 Probable lipoprotein LpqN JDM601_0979 PF03960 ArsC family JDM601_0980 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JDM601_0980 PF14572 Phosphoribosyl synthetase-associated domain JDM601_0981 PF00132 Bacterial transferase hexapeptide (six repeats) JDM601_0981 PF12804 MobA-like NTP transferase domain JDM601_0982 PF18665 Tetracyclin repressor-like, C-terminal domain JDM601_0982 PF00440 Bacterial regulatory proteins, tetR family JDM601_0983 PF17757 UvrB interaction domain JDM601_0983 PF03461 TRCF domain JDM601_0983 PF00271 Helicase conserved C-terminal domain JDM601_0983 PF00270 DEAD/DEAH box helicase JDM601_0983 PF02559 CarD-like/TRCF domain JDM601_0984 PF03819 MazG nucleotide pyrophosphohydrolase domain JDM601_0985 PF00823 PPE family JDM601_0986 PF08281 Sigma-70, region 4 JDM601_0986 PF04542 Sigma-70 region 2 JDM601_0988 PF00113 Enolase, C-terminal TIM barrel domain JDM601_0988 PF03952 Enolase, N-terminal domain JDM601_0991 PF02541 Ppx/GppA phosphatase family JDM601_0993 PF00486 Transcriptional regulatory protein, C terminal JDM601_0993 PF00072 Response regulator receiver domain JDM601_0994 PF00512 His Kinase A (phospho-acceptor) domain JDM601_0994 PF00582 Universal stress protein family JDM601_0994 PF02702 Osmosensitive K+ channel His kinase sensor domain JDM601_0994 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_0994 PF13493 Domain of unknown function (DUF4118) JDM601_0995 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_0995 PF00823 PPE family JDM601_0996 PF00934 PE family JDM601_0997 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_0997 PF00823 PPE family JDM601_0999 PF06013 Proteins of 100 residues with WXG JDM601_1000 PF06013 Proteins of 100 residues with WXG JDM601_1001 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_1001 PF00823 PPE family JDM601_1002 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_1002 PF00823 PPE family JDM601_1003 PF00934 PE family JDM601_1006 PF13847 Methyltransferase domain JDM601_1007 PF01022 Bacterial regulatory protein, arsR family JDM601_1009 PF00501 AMP-binding enzyme JDM601_1009 PF13193 AMP-binding enzyme C-terminal domain JDM601_1010 PF01113 Dihydrodipicolinate reductase, N-terminus JDM601_1012 PF01734 Patatin-like phospholipase JDM601_1016 PF00378 Enoyl-CoA hydratase/isomerase JDM601_1017 PF00378 Enoyl-CoA hydratase/isomerase JDM601_1020 PF00108 Thiolase, N-terminal domain JDM601_1020 PF02803 Thiolase, C-terminal domain JDM601_1022 PF07859 alpha/beta hydrolase fold JDM601_1023 PF00571 CBS domain JDM601_1023 PF00291 Pyridoxal-phosphate dependent enzyme JDM601_1024 PF06271 RDD family JDM601_1025 PF01053 Cys/Met metabolism PLP-dependent enzyme JDM601_1026 PF03449 Transcription elongation factor, N-terminal JDM601_1026 PF01272 Transcription elongation factor, GreA/GreB, C-term JDM601_1028 PF02585 GlcNAc-PI de-N-acetylase JDM601_1030 PF03190 Protein of unknown function, DUF255 JDM601_1031 PF12680 SnoaL-like domain JDM601_1032 PF03006 Haemolysin-III related JDM601_1033 PF01255 Putative undecaprenyl diphosphate synthase JDM601_1037 PF00485 Phosphoribulokinase / Uridine kinase family JDM601_1039 PF00464 Serine hydroxymethyltransferase JDM601_1040 PF03405 Fatty acid desaturase JDM601_1041 PF13638 PIN domain JDM601_1041 PF02562 PhoH-like protein JDM601_1042 PF00440 Bacterial regulatory proteins, tetR family JDM601_1044 PF01522 Polysaccharide deacetylase JDM601_1045 PF00753 Metallo-beta-lactamase superfamily JDM601_1045 PF14863 Alkyl sulfatase dimerisation JDM601_1045 PF14864 Alkyl sulfatase C-terminal JDM601_1046 PF02720 Domain of unknown function (DUF222) JDM601_1048 PF07690 Major Facilitator Superfamily JDM601_1049 PF00440 Bacterial regulatory proteins, tetR family JDM601_1050 PF00206 Lyase JDM601_1050 PF10415 Fumarase C C-terminus JDM601_1051 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JDM601_1053 PF01594 AI-2E family transporter JDM601_1056 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JDM601_1057 PF02609 Exonuclease VII small subunit JDM601_1058 PF13742 OB-fold nucleic acid binding domain JDM601_1058 PF02601 Exonuclease VII, large subunit JDM601_1060 PF02401 LytB protein JDM601_1062 PF06071 Protein of unknown function (DUF933) JDM601_1062 PF01926 50S ribosome-binding GTPase JDM601_1066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JDM601_1066 PF03466 LysR substrate binding domain JDM601_1068 PF07690 Major Facilitator Superfamily JDM601_1076 PF00561 alpha/beta hydrolase fold JDM601_1078 PF09856 Predicted transcriptional regulator (DUF2083) JDM601_1078 PF01381 Helix-turn-helix JDM601_1078 PF06114 IrrE N-terminal-like domain JDM601_1080 PF03972 MmgE/PrpD family JDM601_1082 PF00285 Citrate synthase, C-terminal domain JDM601_1085 PF00689 Cation transporting ATPase, C-terminus JDM601_1086 PF00378 Enoyl-CoA hydratase/isomerase JDM601_1087 PF01717 Cobalamin-independent synthase, Catalytic domain JDM601_1087 PF08267 Cobalamin-independent synthase, N-terminal domain JDM601_1089 PF00296 Luciferase-like monooxygenase JDM601_1090 PF01113 Dihydrodipicolinate reductase, N-terminus JDM601_1092 PF00440 Bacterial regulatory proteins, tetR family JDM601_1092 PF17932 Tetracyclin repressor-like, C-terminal domain JDM601_1102 PF02405 Permease MlaE JDM601_1106 PF00067 Cytochrome P450 JDM601_1107 PF00106 short chain dehydrogenase JDM601_1108 PF00092 von Willebrand factor type A domain JDM601_1109 PF08406 CbbQ/NirQ/NorQ C-terminal JDM601_1109 PF07728 AAA domain (dynein-related subfamily) JDM601_1113 PF00171 Aldehyde dehydrogenase family JDM601_1114 PF00067 Cytochrome P450 JDM601_1115 PF00106 short chain dehydrogenase JDM601_1116 PF00067 Cytochrome P450 JDM601_1117 PF02803 Thiolase, C-terminal domain JDM601_1117 PF00108 Thiolase, N-terminal domain JDM601_1118 PF00378 Enoyl-CoA hydratase/isomerase JDM601_1119 PF00132 Bacterial transferase hexapeptide (six repeats) JDM601_1121 PF00378 Enoyl-CoA hydratase/isomerase JDM601_1122 PF02515 CoA-transferase family III JDM601_1123 PF00106 short chain dehydrogenase JDM601_1124 PF03060 Nitronate monooxygenase JDM601_1127 PF02661 Fic/DOC family JDM601_1129 PF00440 Bacterial regulatory proteins, tetR family JDM601_1131 PF01494 FAD binding domain JDM601_1132 PF12697 Alpha/beta hydrolase family JDM601_1133 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JDM601_1137 PF02146 Sir2 family JDM601_1138 PF04072 Leucine carboxyl methyltransferase JDM601_1140 PF01243 Pyridoxamine 5'-phosphate oxidase JDM601_1141 PF17227 Family of unknown function (DUF5302) JDM601_1146 PF01329 Pterin 4 alpha carbinolamine dehydratase JDM601_1147 PF09594 Glycosyltransferase family 87 JDM601_1148 PF00293 NUDIX domain JDM601_1149 PF00384 Molybdopterin oxidoreductase JDM601_1149 PF01568 Molydopterin dinucleotide binding domain JDM601_1150 PF14711 Respiratory nitrate reductase beta C-terminal JDM601_1150 PF13247 4Fe-4S dicluster domain JDM601_1151 PF02665 Nitrate reductase gamma subunit JDM601_1151 PF02613 Nitrate reductase delta subunit JDM601_1151 PF00384 Molybdopterin oxidoreductase JDM601_1152 PF00384 Molybdopterin oxidoreductase JDM601_1152 PF02613 Nitrate reductase delta subunit JDM601_1152 PF02665 Nitrate reductase gamma subunit JDM601_1157 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JDM601_1159 PF02585 GlcNAc-PI de-N-acetylase JDM601_1161 PF04055 Radical SAM superfamily JDM601_1162 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JDM601_1162 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_1164 PF00155 Aminotransferase class I and II JDM601_1165 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_1165 PF00823 PPE family JDM601_1166 PF00934 PE family JDM601_1167 PF00823 PPE family JDM601_1167 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_1169 PF04227 Indigoidine synthase A like protein JDM601_1170 PF00115 Cytochrome C and Quinol oxidase polypeptide I JDM601_1172 PF13193 AMP-binding enzyme C-terminal domain JDM601_1172 PF00501 AMP-binding enzyme JDM601_1175 PF05423 Mycobacterium membrane protein JDM601_1176 PF03176 MMPL family JDM601_1177 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle JDM601_1177 PF14602 Hexapeptide repeat of succinyl-transferase JDM601_1178 PF07687 Peptidase dimerisation domain JDM601_1178 PF01546 Peptidase family M20/M25/M40 JDM601_1180 PF03641 Possible lysine decarboxylase JDM601_1181 PF13193 AMP-binding enzyme C-terminal domain JDM601_1181 PF00501 AMP-binding enzyme JDM601_1182 PF00809 Pterin binding enzyme JDM601_1183 PF00535 Glycosyl transferase family 2 JDM601_1185 PF00958 GMP synthase C terminal domain JDM601_1185 PF03352 Methyladenine glycosylase JDM601_1185 PF00117 Glutamine amidotransferase class-I JDM601_1185 PF13673 Acetyltransferase (GNAT) domain JDM601_1185 PF13302 Acetyltransferase (GNAT) domain JDM601_1187 PF00534 Glycosyl transferases group 1 JDM601_1187 PF13439 Glycosyltransferase Family 4 JDM601_1188 PF00483 Nucleotidyl transferase JDM601_1189 PF10783 Protein of unknown function (DUF2599) JDM601_1192 PF13732 Domain of unknown function (DUF4162) JDM601_1192 PF00005 ABC transporter JDM601_1193 PF00440 Bacterial regulatory proteins, tetR family JDM601_1193 PF17933 Tetracyclin repressor-like, C-terminal domain JDM601_1194 PF01596 O-methyltransferase JDM601_1195 PF04542 Sigma-70 region 2 JDM601_1195 PF08281 Sigma-70, region 4 JDM601_1197 PF13180 PDZ domain JDM601_1199 PF01883 Iron-sulfur cluster assembly protein JDM601_1199 PF10609 NUBPL iron-transfer P-loop NTPase JDM601_1202 PF03448 MgtE intracellular N domain JDM601_1202 PF01769 Divalent cation transporter JDM601_1202 PF00571 CBS domain JDM601_1203 PF03328 HpcH/HpaI aldolase/citrate lyase family JDM601_1206 PF01547 Bacterial extracellular solute-binding protein JDM601_1207 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_1208 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_1209 PF00005 ABC transporter JDM601_1209 PF17912 MalK OB fold domain JDM601_1211 PF01544 CorA-like Mg2+ transporter protein JDM601_1212 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JDM601_1212 PF00056 lactate/malate dehydrogenase, NAD binding domain JDM601_1213 PF03949 Malic enzyme, NAD binding domain JDM601_1213 PF00390 Malic enzyme, N-terminal domain JDM601_1215 PF00106 short chain dehydrogenase JDM601_1216 PF00676 Dehydrogenase E1 component JDM601_1216 PF02779 Transketolase, pyrimidine binding domain JDM601_1216 PF16870 2-oxoglutarate dehydrogenase C-terminal JDM601_1216 PF16078 2-oxoglutarate dehydrogenase N-terminus JDM601_1216 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JDM601_1218 PF07690 Major Facilitator Superfamily JDM601_1219 PF14041 LppP/LprE lipoprotein JDM601_1220 PF00270 DEAD/DEAH box helicase JDM601_1220 PF00271 Helicase conserved C-terminal domain JDM601_1220 PF03880 DbpA RNA binding domain JDM601_1222 PF00440 Bacterial regulatory proteins, tetR family JDM601_1223 PF00067 Cytochrome P450 JDM601_1224 PF01565 FAD binding domain JDM601_1224 PF02913 FAD linked oxidases, C-terminal domain JDM601_1225 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JDM601_1228 PF03167 Uracil DNA glycosylase superfamily JDM601_1229 PF00934 PE family JDM601_1230 PF00296 Luciferase-like monooxygenase JDM601_1231 PF04075 F420H(2)-dependent quinone reductase JDM601_1232 PF01230 HIT domain JDM601_1233 PF00155 Aminotransferase class I and II JDM601_1234 PF00211 Adenylate and Guanylate cyclase catalytic domain JDM601_1234 PF16701 Adenylate cyclase regulatory domain JDM601_1236 PF00664 ABC transporter transmembrane region JDM601_1236 PF00005 ABC transporter JDM601_1237 PF00005 ABC transporter JDM601_1237 PF00664 ABC transporter transmembrane region JDM601_1238 PF12079 Protein of unknown function (DUF3558) JDM601_1250 PF00501 AMP-binding enzyme JDM601_1252 PF00440 Bacterial regulatory proteins, tetR family JDM601_1253 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JDM601_1270 PF01850 PIN domain JDM601_1271 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_1273 PF13175 AAA ATPase domain JDM601_1274 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JDM601_1275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JDM601_1275 PF00005 ABC transporter JDM601_1276 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_1276 PF12911 N-terminal TM domain of oligopeptide transport permease C JDM601_1277 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_1278 PF00484 Carbonic anhydrase JDM601_1279 PF01507 Phosphoadenosine phosphosulfate reductase family JDM601_1280 PF00009 Elongation factor Tu GTP binding domain JDM601_1281 PF00459 Inositol monophosphatase family JDM601_1282 PF02082 Transcriptional regulator JDM601_1284 PF00296 Luciferase-like monooxygenase JDM601_1286 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_1286 PF00823 PPE family JDM601_1287 PF00823 PPE family JDM601_1287 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_1288 PF00296 Luciferase-like monooxygenase JDM601_1291 PF03485 Arginyl tRNA synthetase N terminal domain JDM601_1291 PF05746 DALR anticodon binding domain JDM601_1291 PF00750 tRNA synthetases class I (R) JDM601_1292 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JDM601_1292 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JDM601_1293 PF01842 ACT domain JDM601_1293 PF00742 Homoserine dehydrogenase JDM601_1293 PF03447 Homoserine dehydrogenase, NAD binding domain JDM601_1294 PF00291 Pyridoxal-phosphate dependent enzyme JDM601_1295 PF08544 GHMP kinases C terminal JDM601_1295 PF00288 GHMP kinases N terminal domain JDM601_1296 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JDM601_1296 PF07498 Rho termination factor, N-terminal domain JDM601_1296 PF07497 Rho termination factor, RNA-binding domain JDM601_1297 PF01197 Ribosomal protein L31 JDM601_1298 PF00472 RF-1 domain JDM601_1298 PF03462 PCRF domain JDM601_1299 PF13649 Methyltransferase domain JDM601_1299 PF17827 PrmC N-terminal domain JDM601_1300 PF01300 Telomere recombination JDM601_1301 PF00953 Glycosyl transferase family 4 JDM601_1302 PF03899 ATP synthase I chain JDM601_1303 PF00119 ATP synthase A chain JDM601_1304 PF00137 ATP synthase subunit C JDM601_1305 PF00430 ATP synthase B/B' CF(0) JDM601_1306 PF00213 ATP synthase delta (OSCP) subunit JDM601_1306 PF00430 ATP synthase B/B' CF(0) JDM601_1307 PF02874 ATP synthase alpha/beta family, beta-barrel domain JDM601_1307 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JDM601_1307 PF00306 ATP synthase alpha/beta chain, C terminal domain JDM601_1308 PF00231 ATP synthase JDM601_1309 PF02874 ATP synthase alpha/beta family, beta-barrel domain JDM601_1309 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JDM601_1310 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JDM601_1311 PF10739 Protein of unknown function (DUF2550) JDM601_1312 PF01923 Cobalamin adenosyltransferase JDM601_1313 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JDM601_1314 PF00823 PPE family JDM601_1314 PF08237 PE-PPE domain JDM601_1315 PF01527 Transposase JDM601_1316 PF13276 HTH-like domain JDM601_1316 PF13683 Integrase core domain JDM601_1319 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JDM601_1319 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JDM601_1320 PF00730 HhH-GPD superfamily base excision DNA repair protein JDM601_1320 PF02805 Metal binding domain of Ada JDM601_1320 PF06029 AlkA N-terminal domain JDM601_1320 PF12833 Helix-turn-helix domain JDM601_1321 PF00027 Cyclic nucleotide-binding domain JDM601_1321 PF04960 Glutaminase JDM601_1322 PF00672 HAMP domain JDM601_1322 PF00211 Adenylate and Guanylate cyclase catalytic domain JDM601_1323 PF01939 Endonuclease NucS JDM601_1324 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_1324 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JDM601_1326 PF02803 Thiolase, C-terminal domain JDM601_1326 PF00108 Thiolase, N-terminal domain JDM601_1327 PF00085 Thioredoxin JDM601_1328 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JDM601_1328 PF02806 Alpha amylase, C-terminal all-beta domain JDM601_1328 PF00128 Alpha amylase, catalytic domain JDM601_1329 PF00128 Alpha amylase, catalytic domain JDM601_1329 PF11896 Domain of unknown function (DUF3416) JDM601_1330 PF11897 Protein of unknown function (DUF3417) JDM601_1330 PF00343 Carbohydrate phosphorylase JDM601_1332 PF13307 Helicase C-terminal domain JDM601_1335 PF01850 PIN domain JDM601_1336 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JDM601_1336 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JDM601_1337 PF02617 ATP-dependent Clp protease adaptor protein ClpS JDM601_1338 PF09438 Domain of unknown function (DUF2017) JDM601_1339 PF03576 Peptidase family S58 JDM601_1340 PF01694 Rhomboid family JDM601_1341 PF01177 Asp/Glu/Hydantoin racemase JDM601_1342 PF12706 Beta-lactamase superfamily domain JDM601_1343 PF01138 3' exoribonuclease family, domain 1 JDM601_1343 PF03725 3' exoribonuclease family, domain 2 JDM601_1344 PF01725 Ham1 family JDM601_1345 PF00069 Protein kinase domain JDM601_1346 PF12823 Domain of unknown function (DUF3817) JDM601_1348 PF00589 Phage integrase family JDM601_1348 PF02920 DNA binding domain of tn916 integrase JDM601_1363 PF12161 HsdM N-terminal domain JDM601_1363 PF02384 N-6 DNA Methylase JDM601_1367 PF02796 Helix-turn-helix domain of resolvase JDM601_1367 PF00239 Resolvase, N terminal domain JDM601_1370 PF13683 Integrase core domain JDM601_1370 PF13276 HTH-like domain JDM601_1371 PF01527 Transposase JDM601_1382 PF08924 Domain of unknown function (DUF1906) JDM601_1384 PF01648 4'-phosphopantetheinyl transferase superfamily JDM601_1385 PF07687 Peptidase dimerisation domain JDM601_1385 PF01546 Peptidase family M20/M25/M40 JDM601_1387 PF00578 AhpC/TSA family JDM601_1392 PF17964 Bacterial Ig domain JDM601_1392 PF03734 L,D-transpeptidase catalytic domain JDM601_1394 PF00929 Exonuclease JDM601_1395 PF05872 Bacterial protein of unknown function (DUF853) JDM601_1396 PF00106 short chain dehydrogenase JDM601_1400 PF13193 AMP-binding enzyme C-terminal domain JDM601_1400 PF00501 AMP-binding enzyme JDM601_1401 PF01144 Coenzyme A transferase JDM601_1402 PF01144 Coenzyme A transferase JDM601_1403 PF01039 Carboxyl transferase domain JDM601_1404 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JDM601_1404 PF00289 Biotin carboxylase, N-terminal domain JDM601_1404 PF02785 Biotin carboxylase C-terminal domain JDM601_1404 PF00364 Biotin-requiring enzyme JDM601_1405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_1405 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_1405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_1406 PF01575 MaoC like domain JDM601_1407 PF03328 HpcH/HpaI aldolase/citrate lyase family JDM601_1408 PF13378 Enolase C-terminal domain-like JDM601_1409 PF02558 Ketopantoate reductase PanE/ApbA JDM601_1409 PF08546 Ketopantoate reductase PanE/ApbA C terminal JDM601_1410 PF04072 Leucine carboxyl methyltransferase JDM601_1416 PF07732 Multicopper oxidase JDM601_1417 PF00392 Bacterial regulatory proteins, gntR family JDM601_1417 PF00155 Aminotransferase class I and II JDM601_1418 PF00676 Dehydrogenase E1 component JDM601_1419 PF02779 Transketolase, pyrimidine binding domain JDM601_1419 PF02780 Transketolase, C-terminal domain JDM601_1420 PF00364 Biotin-requiring enzyme JDM601_1420 PF02817 e3 binding domain JDM601_1420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JDM601_1421 PF00378 Enoyl-CoA hydratase/isomerase JDM601_1423 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JDM601_1423 PF06974 Protein of unknown function (DUF1298) JDM601_1425 PF01553 Acyltransferase JDM601_1426 PF05425 Copper resistance protein D JDM601_1426 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) JDM601_1427 PF08946 Osmosensory transporter coiled coil JDM601_1427 PF00083 Sugar (and other) transporter JDM601_1429 PF07161 LppX_LprAFG lipoprotein JDM601_1430 PF00436 Single-strand binding protein family JDM601_1431 PF00005 ABC transporter JDM601_1431 PF12848 ABC transporter JDM601_1432 PF05088 Bacterial NAD-glutamate dehydrogenase JDM601_1434 PF00128 Alpha amylase, catalytic domain JDM601_1435 PF01152 Bacterial-like globin JDM601_1439 PF17174 Domain of unknown function (DUF5130) JDM601_1441 PF11838 ERAP1-like C-terminal domain JDM601_1441 PF01433 Peptidase family M1 domain JDM601_1442 PF01323 DSBA-like thioredoxin domain JDM601_1443 PF02502 Ribose/Galactose Isomerase JDM601_1444 PF06827 Zinc finger found in FPG and IleRS JDM601_1444 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JDM601_1444 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JDM601_1446 PF05697 Bacterial trigger factor protein (TF) JDM601_1446 PF05698 Bacterial trigger factor protein (TF) C-terminus JDM601_1446 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JDM601_1447 PF00574 Clp protease JDM601_1448 PF00574 Clp protease JDM601_1449 PF02574 Homocysteine S-methyltransferase JDM601_1450 PF10431 C-terminal, D2-small domain, of ClpB protein JDM601_1450 PF07724 AAA domain (Cdc48 subfamily) JDM601_1450 PF06689 ClpX C4-type zinc finger JDM601_1451 PF00487 Fatty acid desaturase JDM601_1452 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JDM601_1452 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JDM601_1452 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JDM601_1453 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JDM601_1454 PF12804 MobA-like NTP transferase domain JDM601_1456 PF06737 Transglycosylase-like domain JDM601_1457 PF03435 Saccharopine dehydrogenase NADP binding domain JDM601_1459 PF10458 Valyl tRNA synthetase tRNA binding arm JDM601_1459 PF00133 tRNA synthetases class I (I, L, M and V) JDM601_1459 PF08264 Anticodon-binding domain of tRNA JDM601_1460 PF08245 Mur ligase middle domain JDM601_1460 PF02875 Mur ligase family, glutamate ligase domain JDM601_1462 PF00334 Nucleoside diphosphate kinase JDM601_1463 PF10150 Ribonuclease E/G family JDM601_1464 PF00829 Ribosomal prokaryotic L21 protein JDM601_1466 PF01016 Ribosomal L27 protein JDM601_1467 PF09269 Domain of unknown function (DUF1967) JDM601_1467 PF01926 50S ribosome-binding GTPase JDM601_1467 PF01018 GTP1/OBG JDM601_1468 PF00696 Amino acid kinase family JDM601_1468 PF01472 PUA domain JDM601_1471 PF00067 Cytochrome P450 JDM601_1473 PF07690 Major Facilitator Superfamily JDM601_1474 PF02146 Sir2 family JDM601_1476 PF00795 Carbon-nitrogen hydrolase JDM601_1476 PF02540 NAD synthase JDM601_1478 PF00294 pfkB family carbohydrate kinase JDM601_1480 PF00924 Mechanosensitive ion channel JDM601_1481 PF00171 Aldehyde dehydrogenase family JDM601_1482 PF00004 ATPase family associated with various cellular activities (AAA) JDM601_1482 PF07724 AAA domain (Cdc48 subfamily) JDM601_1482 PF17871 AAA lid domain JDM601_1482 PF02861 Clp amino terminal domain, pathogenicity island component JDM601_1482 PF10431 C-terminal, D2-small domain, of ClpB protein JDM601_1485 PF00196 Bacterial regulatory proteins, luxR family JDM601_1485 PF00072 Response regulator receiver domain JDM601_1487 PF01467 Cytidylyltransferase-like JDM601_1489 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_1491 PF02645 Uncharacterised protein, DegV family COG1307 JDM601_1492 PF03176 MMPL family JDM601_1493 PF05423 Mycobacterium membrane protein JDM601_1495 PF01113 Dihydrodipicolinate reductase, N-terminus JDM601_1496 PF13530 Sterol carrier protein domain JDM601_1496 PF17668 Acetyltransferase (GNAT) domain JDM601_1497 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_1497 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_1497 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_1498 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_1498 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_1498 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_1500 PF10531 SLBB domain JDM601_1503 PF01649 Ribosomal protein S20 JDM601_1504 PF12706 Beta-lactamase superfamily domain JDM601_1505 PF00571 CBS domain JDM601_1505 PF00478 IMP dehydrogenase / GMP reductase domain JDM601_1508 PF06421 GTP-binding protein LepA C-terminus JDM601_1508 PF00009 Elongation factor Tu GTP binding domain JDM601_1508 PF00679 Elongation factor G C-terminus JDM601_1510 PF00723 Glycosyl hydrolases family 15 JDM601_1513 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_1514 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_1515 PF00005 ABC transporter JDM601_1515 PF12857 TOBE-like domain JDM601_1518 PF01507 Phosphoadenosine phosphosulfate reductase family JDM601_1519 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JDM601_1519 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JDM601_1521 PF06737 Transglycosylase-like domain JDM601_1522 PF04055 Radical SAM superfamily JDM601_1525 PF01814 Hemerythrin HHE cation binding domain JDM601_1526 PF02583 Metal-sensitive transcriptional repressor JDM601_1527 PF00550 Phosphopantetheine attachment site JDM601_1527 PF08659 KR domain JDM601_1527 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_1527 PF16197 Ketoacyl-synthetase C-terminal extension JDM601_1527 PF00698 Acyl transferase domain JDM601_1527 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_1528 PF13193 AMP-binding enzyme C-terminal domain JDM601_1528 PF00501 AMP-binding enzyme JDM601_1529 PF00501 AMP-binding enzyme JDM601_1529 PF00975 Thioesterase domain JDM601_1529 PF00550 Phosphopantetheine attachment site JDM601_1529 PF00668 Condensation domain JDM601_1529 PF13193 AMP-binding enzyme C-terminal domain JDM601_1531 PF00550 Phosphopantetheine attachment site JDM601_1532 PF00501 AMP-binding enzyme JDM601_1534 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_1534 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_1534 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_1535 PF00664 ABC transporter transmembrane region JDM601_1535 PF00005 ABC transporter JDM601_1535 PF08021 Siderophore-interacting FAD-binding domain JDM601_1535 PF04954 Siderophore-interacting protein JDM601_1536 PF00005 ABC transporter JDM601_1539 PF00975 Thioesterase domain JDM601_1539 PF00550 Phosphopantetheine attachment site JDM601_1539 PF00668 Condensation domain JDM601_1539 PF13193 AMP-binding enzyme C-terminal domain JDM601_1539 PF00501 AMP-binding enzyme JDM601_1540 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_1540 PF08659 KR domain JDM601_1540 PF14765 Polyketide synthase dehydratase JDM601_1540 PF00550 Phosphopantetheine attachment site JDM601_1540 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_1540 PF16197 Ketoacyl-synthetase C-terminal extension JDM601_1540 PF00698 Acyl transferase domain JDM601_1541 PF16197 Ketoacyl-synthetase C-terminal extension JDM601_1541 PF00698 Acyl transferase domain JDM601_1541 PF08990 Erythronolide synthase docking JDM601_1541 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_1541 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_1541 PF00550 Phosphopantetheine attachment site JDM601_1541 PF08659 KR domain JDM601_1542 PF13193 AMP-binding enzyme C-terminal domain JDM601_1542 PF00975 Thioesterase domain JDM601_1542 PF00501 AMP-binding enzyme JDM601_1542 PF00668 Condensation domain JDM601_1542 PF00550 Phosphopantetheine attachment site JDM601_1543 PF00550 Phosphopantetheine attachment site JDM601_1543 PF00668 Condensation domain JDM601_1543 PF13193 AMP-binding enzyme C-terminal domain JDM601_1543 PF00501 AMP-binding enzyme JDM601_1544 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) JDM601_1545 PF03621 MbtH-like protein JDM601_1547 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JDM601_1547 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JDM601_1548 PF00282 Pyridoxal-dependent decarboxylase conserved domain JDM601_1549 PF01628 HrcA protein C terminal domain JDM601_1550 PF00684 DnaJ central domain JDM601_1550 PF00226 DnaJ domain JDM601_1550 PF01556 DnaJ C terminal domain JDM601_1551 PF04452 RNA methyltransferase JDM601_1552 PF01209 ubiE/COQ5 methyltransferase family JDM601_1553 PF12833 Helix-turn-helix domain JDM601_1554 PF02562 PhoH-like protein JDM601_1555 PF02130 Uncharacterized protein family UPF0054 JDM601_1556 PF00571 CBS domain JDM601_1556 PF03471 Transporter associated domain JDM601_1556 PF01595 Cyclin M transmembrane N-terminal domain JDM601_1557 PF01926 50S ribosome-binding GTPase JDM601_1557 PF07650 KH domain JDM601_1559 PF00743 Flavin-binding monooxygenase-like JDM601_1560 PF00581 Rhodanese-like domain JDM601_1562 PF01425 Amidase JDM601_1563 PF02565 Recombination protein O C terminal JDM601_1563 PF11967 Recombination protein O N terminal JDM601_1565 PF13847 Methyltransferase domain JDM601_1566 PF01255 Putative undecaprenyl diphosphate synthase JDM601_1568 PF01475 Ferric uptake regulator family JDM601_1569 PF01022 Bacterial regulatory protein, arsR family JDM601_1570 PF03129 Anticodon binding domain JDM601_1570 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JDM601_1572 PF04536 TPM domain JDM601_1573 PF01966 HD domain JDM601_1573 PF13286 Phosphohydrolase-associated domain JDM601_1575 PF08278 DNA primase DnaG DnaB-binding JDM601_1575 PF13662 Toprim domain JDM601_1575 PF08275 DNA primase catalytic core, N-terminal domain JDM601_1575 PF01807 CHC2 zinc finger JDM601_1575 PF10410 DnaB-helicase binding domain of primase JDM601_1580 PF00440 Bacterial regulatory proteins, tetR family JDM601_1581 PF00440 Bacterial regulatory proteins, tetR family JDM601_1583 PF00990 Diguanylate cyclase, GGDEF domain JDM601_1583 PF13185 GAF domain JDM601_1583 PF00563 EAL domain JDM601_1586 PF00005 ABC transporter JDM601_1587 PF02361 Cobalt transport protein JDM601_1590 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_1591 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_1595 PF00211 Adenylate and Guanylate cyclase catalytic domain JDM601_1596 PF00183 Hsp90 protein JDM601_1597 PF00823 PPE family JDM601_1597 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_1598 PF00823 PPE family JDM601_1598 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_1599 PF08659 KR domain JDM601_1599 PF00698 Acyl transferase domain JDM601_1599 PF08990 Erythronolide synthase docking JDM601_1599 PF14765 Polyketide synthase dehydratase JDM601_1599 PF00550 Phosphopantetheine attachment site JDM601_1599 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_1599 PF16197 Ketoacyl-synthetase C-terminal extension JDM601_1599 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_1599 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_1602 PF07298 NnrU protein JDM601_1604 PF04542 Sigma-70 region 2 JDM601_1604 PF12680 SnoaL-like domain JDM601_1604 PF08281 Sigma-70, region 4 JDM601_1606 PF07859 alpha/beta hydrolase fold JDM601_1607 PF00106 short chain dehydrogenase JDM601_1609 PF00743 Flavin-binding monooxygenase-like JDM601_1615 PF00355 Rieske [2Fe-2S] domain JDM601_1616 PF01113 Dihydrodipicolinate reductase, N-terminus JDM601_1616 PF05173 Dihydrodipicolinate reductase, C-terminus JDM601_1617 PF09167 Domain of unknown function (DUF1942) JDM601_1618 PF09167 Domain of unknown function (DUF1942) JDM601_1619 PF00069 Protein kinase domain JDM601_1619 PF14032 PknH-like extracellular domain JDM601_1621 PF00106 short chain dehydrogenase JDM601_1622 PF00501 AMP-binding enzyme JDM601_1622 PF13193 AMP-binding enzyme C-terminal domain JDM601_1624 PF13193 AMP-binding enzyme C-terminal domain JDM601_1624 PF00501 AMP-binding enzyme JDM601_1625 PF02720 Domain of unknown function (DUF222) JDM601_1627 PF17674 HHH domain JDM601_1627 PF00575 S1 RNA binding domain JDM601_1627 PF09371 Tex-like protein N-terminal domain JDM601_1627 PF16921 Tex protein YqgF-like domain JDM601_1628 PF01565 FAD binding domain JDM601_1628 PF02913 FAD linked oxidases, C-terminal domain JDM601_1629 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JDM601_1629 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JDM601_1632 PF00012 Hsp70 protein JDM601_1635 PF00753 Metallo-beta-lactamase superfamily JDM601_1636 PF00107 Zinc-binding dehydrogenase JDM601_1636 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_1637 PF07969 Amidohydrolase family JDM601_1641 PF00781 Diacylglycerol kinase catalytic domain JDM601_1642 PF02913 FAD linked oxidases, C-terminal domain JDM601_1642 PF01565 FAD binding domain JDM601_1643 PF00440 Bacterial regulatory proteins, tetR family JDM601_1644 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JDM601_1644 PF01266 FAD dependent oxidoreductase JDM601_1645 PF04191 Phospholipid methyltransferase JDM601_1648 PF01039 Carboxyl transferase domain JDM601_1649 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_1649 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_1650 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_1650 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_1651 PF00550 Phosphopantetheine attachment site JDM601_1652 PF00698 Acyl transferase domain JDM601_1653 PF13556 PucR C-terminal helix-turn-helix domain JDM601_1653 PF17853 GGDEF-like domain JDM601_1654 PF00456 Transketolase, thiamine diphosphate binding domain JDM601_1654 PF17831 Pyruvate dehydrogenase E1 component middle domain JDM601_1657 PF11253 Protein of unknown function (DUF3052) JDM601_1658 PF00578 AhpC/TSA family JDM601_1660 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) JDM601_1661 PF02104 SURF1 family JDM601_1662 PF01451 Low molecular weight phosphotyrosine protein phosphatase JDM601_1664 PF01784 NIF3 (NGG1p interacting factor 3) JDM601_1665 PF02591 C4-type zinc ribbon domain JDM601_1666 PF13456 Reverse transcriptase-like JDM601_1666 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_1667 PF01381 Helix-turn-helix JDM601_1668 PF00132 Bacterial transferase hexapeptide (six repeats) JDM601_1669 PF00291 Pyridoxal-phosphate dependent enzyme JDM601_1670 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_1671 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA JDM601_1672 PF13847 Methyltransferase domain JDM601_1674 PF01928 CYTH domain JDM601_1674 PF05235 CHAD domain JDM601_1675 PF02548 Ketopantoate hydroxymethyltransferase JDM601_1677 PF00561 alpha/beta hydrolase fold JDM601_1678 PF03951 Glutamine synthetase, beta-Grasp domain JDM601_1678 PF00120 Glutamine synthetase, catalytic domain JDM601_1679 PF03710 Glutamate-ammonia ligase adenylyltransferase JDM601_1679 PF08335 GlnD PII-uridylyltransferase JDM601_1682 PF03951 Glutamine synthetase, beta-Grasp domain JDM601_1682 PF00120 Glutamine synthetase, catalytic domain JDM601_1684 PF13829 Domain of unknown function (DUF4191) JDM601_1685 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JDM601_1685 PF04055 Radical SAM superfamily JDM601_1686 PF03099 Biotin/lipoate A/B protein ligase family JDM601_1687 PF01370 NAD dependent epimerase/dehydratase family JDM601_1687 PF08338 Domain of unknown function (DUF1731) JDM601_1688 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JDM601_1688 PF00364 Biotin-requiring enzyme JDM601_1688 PF02817 e3 binding domain JDM601_1690 PF00883 Cytosol aminopeptidase family, catalytic domain JDM601_1690 PF02789 Cytosol aminopeptidase family, N-terminal domain JDM601_1691 PF16701 Adenylate cyclase regulatory domain JDM601_1691 PF00211 Adenylate and Guanylate cyclase catalytic domain JDM601_1692 PF01571 Aminomethyltransferase folate-binding domain JDM601_1692 PF08669 Glycine cleavage T-protein C-terminal barrel domain JDM601_1693 PF01063 Amino-transferase class IV JDM601_1695 PF02654 Cobalamin-5-phosphate synthase JDM601_1696 PF02277 Phosphoribosyltransferase JDM601_1697 PF11241 Protein of unknown function (DUF3043) JDM601_1698 PF02595 Glycerate kinase family JDM601_1699 PF01521 Iron-sulphur cluster biosynthesis JDM601_1700 PF00294 pfkB family carbohydrate kinase JDM601_1701 PF00733 Asparagine synthase JDM601_1701 PF13537 Glutamine amidotransferase domain JDM601_1702 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JDM601_1703 PF12270 Cytochrome c oxidase subunit IV JDM601_1704 PF05423 Mycobacterium membrane protein JDM601_1705 PF10812 Protein of unknown function (DUF2561) JDM601_1706 PF01243 Pyridoxamine 5'-phosphate oxidase JDM601_1706 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JDM601_1707 PF13631 Cytochrome b(N-terminal)/b6/petB JDM601_1708 PF00355 Rieske [2Fe-2S] domain JDM601_1709 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JDM601_1709 PF00034 Cytochrome c JDM601_1710 PF00510 Cytochrome c oxidase subunit III JDM601_1711 PF01541 GIY-YIG catalytic domain JDM601_1711 PF00929 Exonuclease JDM601_1713 PF00877 NlpC/P60 family JDM601_1715 PF00534 Glycosyl transferases group 1 JDM601_1715 PF13439 Glycosyltransferase Family 4 JDM601_1716 PF00501 AMP-binding enzyme JDM601_1719 PF17886 HSP20-like domain found in ArsA JDM601_1719 PF02374 Anion-transporting ATPase JDM601_1721 PF09594 Glycosyltransferase family 87 JDM601_1724 PF16473 3' exoribonuclease, RNase T-like JDM601_1725 PF01474 Class-II DAHP synthetase family JDM601_1726 PF00069 Protein kinase domain JDM601_1727 PF18367 Rv2175c C-terminal domain of unknown function JDM601_1734 PF02381 MraZ protein, putative antitoxin-like JDM601_1735 PF01795 MraW methylase family JDM601_1737 PF00905 Penicillin binding protein transpeptidase domain JDM601_1737 PF03717 Penicillin-binding Protein dimerisation domain JDM601_1738 PF02875 Mur ligase family, glutamate ligase domain JDM601_1738 PF08245 Mur ligase middle domain JDM601_1738 PF01225 Mur ligase family, catalytic domain JDM601_1739 PF01225 Mur ligase family, catalytic domain JDM601_1739 PF08245 Mur ligase middle domain JDM601_1739 PF02875 Mur ligase family, glutamate ligase domain JDM601_1740 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JDM601_1740 PF00953 Glycosyl transferase family 4 JDM601_1741 PF02875 Mur ligase family, glutamate ligase domain JDM601_1741 PF08245 Mur ligase middle domain JDM601_1742 PF01098 Cell cycle protein JDM601_1743 PF04101 Glycosyltransferase family 28 C-terminal domain JDM601_1743 PF03033 Glycosyltransferase family 28 N-terminal domain JDM601_1744 PF08245 Mur ligase middle domain JDM601_1744 PF02875 Mur ligase family, glutamate ligase domain JDM601_1744 PF01225 Mur ligase family, catalytic domain JDM601_1745 PF03799 Cell division protein FtsQ JDM601_1745 PF08478 POTRA domain, FtsQ-type JDM601_1746 PF12327 FtsZ family, C-terminal domain JDM601_1746 PF00091 Tubulin/FtsZ family, GTPase domain JDM601_1748 PF04472 Cell division protein SepF JDM601_1751 PF05103 DivIVA protein JDM601_1752 PF05139 Erythromycin esterase JDM601_1752 PF00156 Phosphoribosyl transferase domain JDM601_1754 PF01546 Peptidase family M20/M25/M40 JDM601_1754 PF07687 Peptidase dimerisation domain JDM601_1755 PF01161 Phosphatidylethanolamine-binding protein JDM601_1756 PF01180 Dihydroorotate dehydrogenase JDM601_1759 PF03176 MMPL family JDM601_1760 PF00195 Chalcone and stilbene synthases, N-terminal domain JDM601_1760 PF02797 Chalcone and stilbene synthases, C-terminal domain JDM601_1762 PF01494 FAD binding domain JDM601_1763 PF13490 Putative zinc-finger JDM601_1764 PF04542 Sigma-70 region 2 JDM601_1764 PF04545 Sigma-70, region 4 JDM601_1765 PF03055 Retinal pigment epithelial membrane protein JDM601_1766 PF04542 Sigma-70 region 2 JDM601_1766 PF04545 Sigma-70, region 4 JDM601_1767 PF02673 Bacitracin resistance protein BacA JDM601_1768 PF13456 Reverse transcriptase-like JDM601_1768 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_1771 PF00459 Inositol monophosphatase family JDM601_1772 PF01406 tRNA synthetases class I (C) catalytic domain JDM601_1775 PF02310 B12 binding domain JDM601_1775 PF02607 B12 binding domain JDM601_1775 PF02965 Vitamin B12 dependent methionine synthase, activation domain JDM601_1775 PF02574 Homocysteine S-methyltransferase JDM601_1775 PF00809 Pterin binding enzyme JDM601_1776 PF13419 Haloacid dehalogenase-like hydrolase JDM601_1777 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JDM601_1778 PF01634 ATP phosphoribosyltransferase JDM601_1778 PF08029 HisG, C-terminal domain JDM601_1781 PF08704 tRNA methyltransferase complex GCD14 subunit JDM601_1786 PF17758 Proteasomal ATPase OB N-terminal domain JDM601_1786 PF16450 Proteasomal ATPase OB C-terminal domain JDM601_1786 PF00004 ATPase family associated with various cellular activities (AAA) JDM601_1791 PF03136 Pup-ligase protein JDM601_1792 PF01850 PIN domain JDM601_1794 PF05639 Pup-like protein JDM601_1795 PF00227 Proteasome subunit JDM601_1796 PF00227 Proteasome subunit JDM601_1797 PF02594 Uncharacterised ACR, YggU family COG1872 JDM601_1799 PF01850 PIN domain JDM601_1800 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JDM601_1800 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JDM601_1802 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JDM601_1802 PF01367 5'-3' exonuclease, C-terminal SAM fold JDM601_1802 PF00476 DNA polymerase family A JDM601_1804 PF13367 PrsW family intramembrane metalloprotease JDM601_1805 PF00575 S1 RNA binding domain JDM601_1806 PF04229 GrpB protein JDM601_1806 PF01121 Dephospho-CoA kinase JDM601_1809 PF00271 Helicase conserved C-terminal domain JDM601_1809 PF02151 UvrB/uvrC motif JDM601_1809 PF04851 Type III restriction enzyme, res subunit JDM601_1809 PF17757 UvrB interaction domain JDM601_1809 PF12344 Ultra-violet resistance protein B JDM601_1810 PF07690 Major Facilitator Superfamily JDM601_1812 PF00582 Universal stress protein family JDM601_1813 PF00753 Metallo-beta-lactamase superfamily JDM601_1814 PF17755 UvrA DNA-binding domain JDM601_1814 PF17760 UvrA interaction domain JDM601_1814 PF00005 ABC transporter JDM601_1820 PF05198 Translation initiation factor IF-3, N-terminal domain JDM601_1820 PF00707 Translation initiation factor IF-3, C-terminal domain JDM601_1821 PF01632 Ribosomal protein L35 JDM601_1822 PF00453 Ribosomal protein L20 JDM601_1824 PF00588 SpoU rRNA Methylase family JDM601_1824 PF08032 RNA 2'-O ribose methyltransferase substrate binding JDM601_1827 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JDM601_1827 PF01409 tRNA synthetases class II core domain (F) JDM601_1828 PF01588 Putative tRNA binding domain JDM601_1828 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JDM601_1828 PF03147 Ferredoxin-fold anticodon binding domain JDM601_1828 PF03484 tRNA synthetase B5 domain JDM601_1828 PF03483 B3/4 domain JDM601_1829 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_1829 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JDM601_1830 PF02774 Semialdehyde dehydrogenase, dimerisation domain JDM601_1830 PF01118 Semialdehyde dehydrogenase, NAD binding domain JDM601_1831 PF01960 ArgJ family JDM601_1832 PF00696 Amino acid kinase family JDM601_1833 PF00202 Aminotransferase class-III JDM601_1834 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JDM601_1834 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JDM601_1835 PF02863 Arginine repressor, C-terminal domain JDM601_1835 PF01316 Arginine repressor, DNA binding domain JDM601_1836 PF00764 Arginosuccinate synthase JDM601_1837 PF00206 Lyase JDM601_1837 PF14698 Argininosuccinate lyase C-terminal JDM601_1838 PF09167 Domain of unknown function (DUF1942) JDM601_1840 PF12848 ABC transporter JDM601_1840 PF16326 ABC transporter C-terminal domain JDM601_1840 PF00005 ABC transporter JDM601_1842 PF13977 BetI-type transcriptional repressor, C-terminal JDM601_1842 PF00440 Bacterial regulatory proteins, tetR family JDM601_1843 PF03966 Trm112p-like protein JDM601_1845 PF00005 ABC transporter JDM601_1846 PF02245 Methylpurine-DNA glycosylase (MPG) JDM601_1847 PF00579 tRNA synthetases class I (W and Y) JDM601_1848 PF13344 Haloacid dehalogenase-like hydrolase JDM601_1848 PF18407 GCN5-related N-acetyltransferase like domain JDM601_1850 PF01479 S4 domain JDM601_1850 PF01728 FtsJ-like methyltransferase JDM601_1851 PF01513 ATP-NAD kinase JDM601_1852 PF02463 RecF/RecN/SMC N terminal domain JDM601_1854 PF11382 Copper transport outer membrane protein, MctB JDM601_1855 PF00117 Glutamine amidotransferase class-I JDM601_1855 PF06418 CTP synthase N-terminus JDM601_1857 PF02899 Phage integrase, N-terminal SAM-like domain JDM601_1857 PF00589 Phage integrase family JDM601_1860 PF13614 AAA domain JDM601_1861 PF02616 Segregation and condensation protein ScpA JDM601_1862 PF04079 Segregation and condensation complex subunit ScpB JDM601_1863 PF00849 RNA pseudouridylate synthase JDM601_1863 PF01479 S4 domain JDM601_1864 PF02224 Cytidylate kinase JDM601_1865 PF01926 50S ribosome-binding GTPase JDM601_1865 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JDM601_1870 PF14659 Phage integrase, N-terminal SAM-like domain JDM601_1870 PF00589 Phage integrase family JDM601_1874 PF03073 TspO/MBR family JDM601_1876 PF14493 Helix-turn-helix domain JDM601_1876 PF05970 PIF1-like helicase JDM601_1878 PF00390 Malic enzyme, N-terminal domain JDM601_1878 PF03949 Malic enzyme, NAD binding domain JDM601_1879 PF01979 Amidohydrolase family JDM601_1880 PF00296 Luciferase-like monooxygenase JDM601_1890 PF00174 Oxidoreductase molybdopterin binding domain JDM601_1892 PF05108 Type VII secretion system ESX-1, transport TM domain B JDM601_1893 PF01580 FtsK/SpoIIIE family JDM601_1894 PF00934 PE family JDM601_1895 PF06013 Proteins of 100 residues with WXG JDM601_1896 PF06013 Proteins of 100 residues with WXG JDM601_1897 PF14011 EspG family JDM601_1898 PF08817 WXG100 protein secretion system (Wss), protein YukD JDM601_1899 PF00082 Subtilase family JDM601_1900 PF11203 Putative type VII ESX secretion system translocon, EccE JDM601_1901 PF00004 ATPase family associated with various cellular activities (AAA) JDM601_1901 PF17866 AAA lid domain JDM601_1902 PF00934 PE family JDM601_1903 PF06013 Proteins of 100 residues with WXG JDM601_1904 PF06013 Proteins of 100 residues with WXG JDM601_1905 PF00823 PPE family JDM601_1905 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_1906 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_1906 PF00823 PPE family JDM601_1907 PF00823 PPE family JDM601_1907 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_1908 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_1908 PF00823 PPE family JDM601_1909 PF02308 MgtC family JDM601_1910 PF04116 Fatty acid hydroxylase superfamily JDM601_1915 PF06472 ABC transporter transmembrane region 2 JDM601_1915 PF00005 ABC transporter JDM601_1916 PF07516 SecA Wing and Scaffold domain JDM601_1916 PF01043 SecA preprotein cross-linking domain JDM601_1916 PF07517 SecA DEAD-like domain JDM601_1918 PF05949 Bacterial protein of unknown function (DUF881) JDM601_1919 PF06947 Protein of unknown function (DUF1290) JDM601_1920 PF05949 Bacterial protein of unknown function (DUF881) JDM601_1921 PF01597 Glycine cleavage H-protein JDM601_1922 PF00498 FHA domain JDM601_1923 PF00376 MerR family regulatory protein JDM601_1924 PF02577 Bifunctional nuclease JDM601_1925 PF13411 MerR HTH family regulatory protein JDM601_1926 PF02347 Glycine cleavage system P-protein JDM601_1929 PF01274 Malate synthase JDM601_1931 PF01595 Cyclin M transmembrane N-terminal domain JDM601_1931 PF00571 CBS domain JDM601_1932 PF00571 CBS domain JDM601_1932 PF03471 Transporter associated domain JDM601_1932 PF01595 Cyclin M transmembrane N-terminal domain JDM601_1933 PF00478 IMP dehydrogenase / GMP reductase domain JDM601_1933 PF00571 CBS domain JDM601_1937 PF00934 PE family JDM601_1937 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_1938 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JDM601_1938 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JDM601_1939 PF12697 Alpha/beta hydrolase family JDM601_1941 PF03965 Penicillinase repressor JDM601_1942 PF03061 Thioesterase superfamily JDM601_1943 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_1946 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_1947 PF00005 ABC transporter JDM601_1947 PF03459 TOBE domain JDM601_1948 PF07174 Fibronectin-attachment protein (FAP) JDM601_1950 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_1953 PF09364 XFP N-terminal domain JDM601_1953 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase JDM601_1953 PF09363 XFP C-terminal domain JDM601_1954 PF02515 CoA-transferase family III JDM601_1956 PF14759 Reductase C-terminal JDM601_1956 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_1961 PF01070 FMN-dependent dehydrogenase JDM601_1962 PF02627 Carboxymuconolactone decarboxylase family JDM601_1963 PF00578 AhpC/TSA family JDM601_1964 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JDM601_1964 PF03466 LysR substrate binding domain JDM601_1967 PF00210 Ferritin-like domain JDM601_1968 PF07690 Major Facilitator Superfamily JDM601_1970 PF07858 Limonene-1,2-epoxide hydrolase catalytic domain JDM601_1973 PF00756 Putative esterase JDM601_1977 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JDM601_1977 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JDM601_1978 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JDM601_1978 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JDM601_1981 PF07726 ATPase family associated with various cellular activities (AAA) JDM601_1981 PF17863 AAA lid domain JDM601_1984 PF03060 Nitronate monooxygenase JDM601_1988 PF00994 Probable molybdopterin binding domain JDM601_1988 PF02464 Competence-damaged protein JDM601_1991 PF02580 D-Tyr-tRNA(Tyr) deacylase JDM601_1993 PF01910 Thiamine-binding protein JDM601_1994 PF03883 Peroxide stress protein YaaA JDM601_1997 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal JDM601_1997 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal JDM601_2000 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JDM601_2003 PF01965 DJ-1/PfpI family JDM601_2004 PF00463 Isocitrate lyase family JDM601_2006 PF05423 Mycobacterium membrane protein JDM601_2007 PF03176 MMPL family JDM601_2009 PF00501 AMP-binding enzyme JDM601_2010 PF03176 MMPL family JDM601_2011 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_2011 PF00823 PPE family JDM601_2012 PF05423 Mycobacterium membrane protein JDM601_2016 PF00378 Enoyl-CoA hydratase/isomerase JDM601_2019 PF00890 FAD binding domain JDM601_2020 PF04072 Leucine carboxyl methyltransferase JDM601_2022 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JDM601_2022 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JDM601_2023 PF00107 Zinc-binding dehydrogenase JDM601_2023 PF16884 N-terminal domain of oxidoreductase JDM601_2024 PF08534 Redoxin JDM601_2027 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_2027 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_2033 PF00296 Luciferase-like monooxygenase JDM601_2035 PF12697 Alpha/beta hydrolase family JDM601_2037 PF00392 Bacterial regulatory proteins, gntR family JDM601_2037 PF07729 FCD domain JDM601_2058 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JDM601_2059 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JDM601_2060 PF00872 Transposase, Mutator family JDM601_2068 PF03176 MMPL family JDM601_2071 PF01661 Macro domain JDM601_2075 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JDM601_2075 PF00270 DEAD/DEAH box helicase JDM601_2075 PF00271 Helicase conserved C-terminal domain JDM601_2075 PF11898 Domain of unknown function (DUF3418) JDM601_2075 PF04408 Helicase associated domain (HA2) JDM601_2077 PF05173 Dihydrodipicolinate reductase, C-terminus JDM601_2077 PF01113 Dihydrodipicolinate reductase, N-terminus JDM601_2079 PF00106 short chain dehydrogenase JDM601_2080 PF05305 Protein of unknown function (DUF732) JDM601_2081 PF08241 Methyltransferase domain JDM601_2082 PF00330 Aconitase family (aconitate hydratase) JDM601_2082 PF00694 Aconitase C-terminal domain JDM601_2083 PF03595 Voltage-dependent anion channel JDM601_2084 PF17912 MalK OB fold domain JDM601_2084 PF00005 ABC transporter JDM601_2085 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_2086 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_2089 PF00005 ABC transporter JDM601_2090 PF08281 Sigma-70, region 4 JDM601_2090 PF04542 Sigma-70 region 2 JDM601_2094 PF00857 Isochorismatase family JDM601_2096 PF00135 Carboxylesterase family JDM601_2100 PF13397 RNA polymerase-binding protein JDM601_2101 PF00535 Glycosyl transferase family 2 JDM601_2102 PF00795 Carbon-nitrogen hydrolase JDM601_2102 PF00535 Glycosyl transferase family 2 JDM601_2103 PF07969 Amidohydrolase family JDM601_2106 PF04405 Domain of Unknown function (DUF542) JDM601_2106 PF01814 Hemerythrin HHE cation binding domain JDM601_2109 PF00106 short chain dehydrogenase JDM601_2110 PF01321 Creatinase/Prolidase N-terminal domain JDM601_2110 PF00557 Metallopeptidase family M24 JDM601_2111 PF01243 Pyridoxamine 5'-phosphate oxidase JDM601_2112 PF01367 5'-3' exonuclease, C-terminal SAM fold JDM601_2112 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JDM601_2113 PF14230 Domain of unknown function (DUF4333) JDM601_2114 PF00270 DEAD/DEAH box helicase JDM601_2114 PF08148 DSHCT (NUC185) domain JDM601_2114 PF00271 Helicase conserved C-terminal domain JDM601_2115 PF00902 Sec-independent protein translocase protein (TatC) JDM601_2116 PF02416 mttA/Hcf106 family JDM601_2118 PF13280 WYL domain JDM601_2119 PF13280 WYL domain JDM601_2120 PF03136 Pup-ligase protein JDM601_2121 PF00072 Response regulator receiver domain JDM601_2121 PF03861 ANTAR domain JDM601_2122 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JDM601_2123 PF00211 Adenylate and Guanylate cyclase catalytic domain JDM601_2128 PF00224 Pyruvate kinase, barrel domain JDM601_2128 PF02887 Pyruvate kinase, alpha/beta domain JDM601_2130 PF01790 Prolipoprotein diacylglyceryl transferase JDM601_2131 PF00290 Tryptophan synthase alpha chain JDM601_2132 PF00291 Pyridoxal-phosphate dependent enzyme JDM601_2133 PF00218 Indole-3-glycerol phosphate synthase JDM601_2135 PF04715 Anthranilate synthase component I, N terminal region JDM601_2135 PF00425 chorismate binding enzyme JDM601_2136 PF00578 AhpC/TSA family JDM601_2140 PF01502 Phosphoribosyl-AMP cyclohydrolase JDM601_2141 PF00977 Histidine biosynthesis protein JDM601_2142 PF00459 Inositol monophosphatase family JDM601_2143 PF00977 Histidine biosynthesis protein JDM601_2144 PF00117 Glutamine amidotransferase class-I JDM601_2145 PF00475 Imidazoleglycerol-phosphate dehydratase JDM601_2146 PF00155 Aminotransferase class I and II JDM601_2147 PF00815 Histidinol dehydrogenase JDM601_2150 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JDM601_2150 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JDM601_2151 PF02910 Fumarate reductase flavoprotein C-term JDM601_2151 PF00890 FAD binding domain JDM601_2152 PF02445 Quinolinate synthetase A protein JDM601_2154 PF10821 Protein of unknown function (DUF2567) JDM601_2155 PF03583 Secretory lipase JDM601_2157 PF06968 Biotin and Thiamin Synthesis associated domain JDM601_2157 PF04055 Radical SAM superfamily JDM601_2158 PF00440 Bacterial regulatory proteins, tetR family JDM601_2158 PF13977 BetI-type transcriptional repressor, C-terminal JDM601_2162 PF00155 Aminotransferase class I and II JDM601_2163 PF00202 Aminotransferase class-III JDM601_2164 PF00877 NlpC/P60 family JDM601_2165 PF01757 Acyltransferase family JDM601_2167 PF00128 Alpha amylase, catalytic domain JDM601_2167 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JDM601_2169 PF00585 C-terminal regulatory domain of Threonine dehydratase JDM601_2169 PF00291 Pyridoxal-phosphate dependent enzyme JDM601_2170 PF04075 F420H(2)-dependent quinone reductase JDM601_2173 PF00501 AMP-binding enzyme JDM601_2174 PF00378 Enoyl-CoA hydratase/isomerase JDM601_2177 PF00376 MerR family regulatory protein JDM601_2177 PF09278 MerR, DNA binding JDM601_2180 PF02811 PHP domain JDM601_2180 PF14579 Helix-hairpin-helix motif JDM601_2180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JDM601_2180 PF07733 Bacterial DNA polymerase III alpha NTPase domain JDM601_2182 PF07311 Dodecin JDM601_2184 PF00849 RNA pseudouridylate synthase JDM601_2185 PF01252 Signal peptidase (SPase) II JDM601_2186 PF00710 Asparaginase, N-terminal JDM601_2186 PF17763 Glutaminase/Asparaginase C-terminal domain JDM601_2188 PF00817 impB/mucB/samB family JDM601_2188 PF11798 IMS family HHH motif JDM601_2188 PF11799 impB/mucB/samB family C-terminal domain JDM601_2189 PF00398 Ribosomal RNA adenine dimethylase JDM601_2190 PF08264 Anticodon-binding domain of tRNA JDM601_2190 PF00133 tRNA synthetases class I (I, L, M and V) JDM601_2194 PF03176 MMPL family JDM601_2195 PF00743 Flavin-binding monooxygenase-like JDM601_2196 PF11583 P-aminobenzoate N-oxygenase AurF JDM601_2197 PF08241 Methyltransferase domain JDM601_2198 PF00067 Cytochrome P450 JDM601_2199 PF00106 short chain dehydrogenase JDM601_2200 PF08241 Methyltransferase domain JDM601_2201 PF00106 short chain dehydrogenase JDM601_2202 PF00934 PE family JDM601_2202 PF08237 PE-PPE domain JDM601_2209 PF16911 Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus JDM601_2211 PF00698 Acyl transferase domain JDM601_2211 PF00668 Condensation domain JDM601_2211 PF16197 Ketoacyl-synthetase C-terminal extension JDM601_2211 PF00550 Phosphopantetheine attachment site JDM601_2211 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_2211 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_2212 PF14765 Polyketide synthase dehydratase JDM601_2212 PF00550 Phosphopantetheine attachment site JDM601_2212 PF08659 KR domain JDM601_2212 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_2212 PF16197 Ketoacyl-synthetase C-terminal extension JDM601_2212 PF00698 Acyl transferase domain JDM601_2212 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_2213 PF00698 Acyl transferase domain JDM601_2213 PF00550 Phosphopantetheine attachment site JDM601_2213 PF08659 KR domain JDM601_2213 PF14765 Polyketide synthase dehydratase JDM601_2213 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_2213 PF16197 Ketoacyl-synthetase C-terminal extension JDM601_2213 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_2214 PF00698 Acyl transferase domain JDM601_2214 PF00550 Phosphopantetheine attachment site JDM601_2214 PF08659 KR domain JDM601_2214 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_2214 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_2214 PF16197 Ketoacyl-synthetase C-terminal extension JDM601_2215 PF00698 Acyl transferase domain JDM601_2215 PF16197 Ketoacyl-synthetase C-terminal extension JDM601_2215 PF08659 KR domain JDM601_2215 PF14765 Polyketide synthase dehydratase JDM601_2215 PF00550 Phosphopantetheine attachment site JDM601_2215 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_2215 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_2216 PF00501 AMP-binding enzyme JDM601_2218 PF00975 Thioesterase domain JDM601_2221 PF01642 Methylmalonyl-CoA mutase JDM601_2221 PF02310 B12 binding domain JDM601_2222 PF01642 Methylmalonyl-CoA mutase JDM601_2223 PF09335 SNARE associated Golgi protein JDM601_2225 PF00230 Major intrinsic protein JDM601_2227 PF01145 SPFH domain / Band 7 family JDM601_2233 PF13519 von Willebrand factor type A domain JDM601_2233 PF07584 Aerotolerance regulator N-terminal JDM601_2234 PF01882 Protein of unknown function DUF58 JDM601_2235 PF07726 ATPase family associated with various cellular activities (AAA) JDM601_2235 PF17863 AAA lid domain JDM601_2236 PF00877 NlpC/P60 family JDM601_2237 PF00877 NlpC/P60 family JDM601_2239 PF00330 Aconitase family (aconitate hydratase) JDM601_2239 PF00694 Aconitase C-terminal domain JDM601_2240 PF00440 Bacterial regulatory proteins, tetR family JDM601_2242 PF00005 ABC transporter JDM601_2242 PF12848 ABC transporter JDM601_2243 PF00378 Enoyl-CoA hydratase/isomerase JDM601_2244 PF00085 Thioredoxin JDM601_2246 PF00689 Cation transporting ATPase, C-terminus JDM601_2247 PF01979 Amidohydrolase family JDM601_2247 PF01979 Amidohydrolase family JDM601_2249 PF01883 Iron-sulfur cluster assembly protein JDM601_2250 PF01592 NifU-like N terminal domain JDM601_2251 PF00266 Aminotransferase class-V JDM601_2252 PF00005 ABC transporter JDM601_2253 PF01458 Uncharacterized protein family (UPF0051) JDM601_2254 PF01458 Uncharacterized protein family (UPF0051) JDM601_2257 PF00005 ABC transporter JDM601_2257 PF13732 Domain of unknown function (DUF4162) JDM601_2261 PF00107 Zinc-binding dehydrogenase JDM601_2261 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_2262 PF00823 PPE family JDM601_2263 PF00823 PPE family JDM601_2265 PF01040 UbiA prenyltransferase family JDM601_2267 PF02779 Transketolase, pyrimidine binding domain JDM601_2267 PF00456 Transketolase, thiamine diphosphate binding domain JDM601_2267 PF02780 Transketolase, C-terminal domain JDM601_2268 PF00923 Transaldolase/Fructose-6-phosphate aldolase JDM601_2269 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JDM601_2269 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JDM601_2271 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JDM601_2273 PF03840 Preprotein translocase SecG subunit JDM601_2274 PF00121 Triosephosphate isomerase JDM601_2275 PF00162 Phosphoglycerate kinase JDM601_2276 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JDM601_2276 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JDM601_2279 PF02650 WhiA C-terminal HTH domain JDM601_2279 PF14527 WhiA LAGLIDADG-like domain JDM601_2279 PF10298 WhiA N-terminal LAGLIDADG-like domain JDM601_2280 PF01933 Uncharacterised protein family UPF0052 JDM601_2281 PF03668 P-loop ATPase protein family JDM601_2282 PF02151 UvrB/uvrC motif JDM601_2282 PF01541 GIY-YIG catalytic domain JDM601_2282 PF08459 UvrC Helix-hairpin-helix N-terminal JDM601_2283 PF10756 Bacterial PH domain JDM601_2284 PF00885 6,7-dimethyl-8-ribityllumazine synthase JDM601_2285 PF00925 GTP cyclohydrolase II JDM601_2285 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JDM601_2286 PF00677 Lumazine binding domain JDM601_2287 PF07161 LppX_LprAFG lipoprotein JDM601_2288 PF07690 Major Facilitator Superfamily JDM601_2289 PF01872 RibD C-terminal domain JDM601_2289 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JDM601_2290 PF00834 Ribulose-phosphate 3 epimerase family JDM601_2291 PF01189 16S rRNA methyltransferase RsmB/F JDM601_2291 PF01029 NusB family JDM601_2292 PF02911 Formyl transferase, C-terminal domain JDM601_2292 PF00551 Formyl transferase JDM601_2295 PF00582 Universal stress protein family JDM601_2297 PF17764 3′ DNA-binding domain (3′BD) JDM601_2298 PF06259 Alpha/beta hydrolase JDM601_2299 PF07947 YhhN family JDM601_2300 PF07859 alpha/beta hydrolase fold JDM601_2301 PF00743 Flavin-binding monooxygenase-like JDM601_2302 PF02772 S-adenosylmethionine synthetase, central domain JDM601_2302 PF02773 S-adenosylmethionine synthetase, C-terminal domain JDM601_2302 PF00438 S-adenosylmethionine synthetase, N-terminal domain JDM601_2303 PF00440 Bacterial regulatory proteins, tetR family JDM601_2304 PF01593 Flavin containing amine oxidoreductase JDM601_2305 PF04127 DNA / pantothenate metabolism flavoprotein JDM601_2305 PF02441 Flavoprotein JDM601_2306 PF01192 RNA polymerase Rpb6 JDM601_2307 PF00625 Guanylate kinase JDM601_2310 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JDM601_2311 PF02142 MGS-like domain JDM601_2311 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JDM601_2311 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JDM601_2312 PF00117 Glutamine amidotransferase class-I JDM601_2312 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JDM601_2314 PF01979 Amidohydrolase family JDM601_2315 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JDM601_2315 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JDM601_2316 PF00156 Phosphoribosyl transferase domain JDM601_2317 PF00144 Beta-lactamase JDM601_2318 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_2318 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JDM601_2320 PF02910 Fumarate reductase flavoprotein C-term JDM601_2320 PF00890 FAD binding domain JDM601_2321 PF00005 ABC transporter JDM601_2322 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_2325 PF00392 Bacterial regulatory proteins, gntR family JDM601_2325 PF07702 UTRA domain JDM601_2326 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JDM601_2326 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JDM601_2326 PF01276 Orn/Lys/Arg decarboxylase, major domain JDM601_2328 PF01029 NusB family JDM601_2329 PF08207 Elongation factor P (EF-P) KOW-like domain JDM601_2329 PF09285 Elongation factor P, C-terminal JDM601_2329 PF01132 Elongation factor P (EF-P) OB domain JDM601_2330 PF01321 Creatinase/Prolidase N-terminal domain JDM601_2330 PF00557 Metallopeptidase family M24 JDM601_2331 PF01220 Dehydroquinase class II JDM601_2333 PF01761 3-dehydroquinate synthase JDM601_2334 PF01202 Shikimate kinase JDM601_2335 PF01264 Chorismate synthase JDM601_2338 PF01488 Shikimate / quinate 5-dehydrogenase JDM601_2338 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JDM601_2338 PF08501 Shikimate dehydrogenase substrate binding domain JDM601_2339 PF02618 YceG-like family JDM601_2340 PF03652 Holliday junction resolvase JDM601_2341 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JDM601_2341 PF01411 tRNA synthetases class II (A) JDM601_2341 PF02272 DHHA1 domain JDM601_2342 PF01894 Uncharacterised protein family UPF0047 JDM601_2343 PF03328 HpcH/HpaI aldolase/citrate lyase family JDM601_2344 PF02515 CoA-transferase family III JDM601_2345 PF00296 Luciferase-like monooxygenase JDM601_2346 PF00392 Bacterial regulatory proteins, gntR family JDM601_2346 PF07729 FCD domain JDM601_2347 PF00004 ATPase family associated with various cellular activities (AAA) JDM601_2347 PF16193 AAA C-terminal domain JDM601_2347 PF12002 MgsA AAA+ ATPase C terminal JDM601_2349 PF00872 Transposase, Mutator family JDM601_2350 PF02720 Domain of unknown function (DUF222) JDM601_2351 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_2351 PF00107 Zinc-binding dehydrogenase JDM601_2353 PF06737 Transglycosylase-like domain JDM601_2354 PF03061 Thioesterase superfamily JDM601_2355 PF01336 OB-fold nucleic acid binding domain JDM601_2355 PF02938 GAD domain JDM601_2355 PF00152 tRNA synthetases class II (D, K and N) JDM601_2357 PF06013 Proteins of 100 residues with WXG JDM601_2358 PF06013 Proteins of 100 residues with WXG JDM601_2359 PF00823 PPE family JDM601_2359 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_2360 PF00934 PE family JDM601_2361 PF04228 Putative neutral zinc metallopeptidase JDM601_2362 PF00701 Dihydrodipicolinate synthetase family JDM601_2363 PF00596 Class II Aldolase and Adducin N-terminal domain JDM601_2364 PF08671 Anti-repressor SinI JDM601_2364 PF01381 Helix-turn-helix JDM601_2367 PF13393 Histidyl-tRNA synthetase JDM601_2367 PF03129 Anticodon binding domain JDM601_2368 PF00753 Metallo-beta-lactamase superfamily JDM601_2369 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JDM601_2370 PF02824 TGS domain JDM601_2370 PF04607 Region found in RelA / SpoT proteins JDM601_2370 PF13291 ACT domain JDM601_2371 PF00156 Phosphoribosyl transferase domain JDM601_2372 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JDM601_2373 PF02355 Protein export membrane protein JDM601_2373 PF07549 SecD/SecF GG Motif JDM601_2374 PF02355 Protein export membrane protein JDM601_2374 PF07549 SecD/SecF GG Motif JDM601_2375 PF02699 Preprotein translocase subunit JDM601_2377 PF00202 Aminotransferase class-III JDM601_2378 PF05496 Holliday junction DNA helicase RuvB P-loop domain JDM601_2378 PF17864 RuvB AAA lid domain JDM601_2378 PF05491 RuvB C-terminal winged helix domain JDM601_2379 PF01330 RuvA N terminal domain JDM601_2379 PF07499 RuvA, C-terminal domain JDM601_2380 PF02075 Crossover junction endodeoxyribonuclease RuvC JDM601_2382 PF01709 Transcriptional regulator JDM601_2386 PF01174 SNO glutamine amidotransferase family JDM601_2388 PF01680 SOR/SNZ family JDM601_2389 PF00440 Bacterial regulatory proteins, tetR family JDM601_2389 PF17932 Tetracyclin repressor-like, C-terminal domain JDM601_2391 PF00107 Zinc-binding dehydrogenase JDM601_2391 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_2393 PF13439 Glycosyltransferase Family 4 JDM601_2394 PF03279 Bacterial lipid A biosynthesis acyltransferase JDM601_2396 PF01230 HIT domain JDM601_2397 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JDM601_2397 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JDM601_2397 PF03129 Anticodon binding domain JDM601_2399 PF09348 Domain of unknown function (DUF1990) JDM601_2401 PF03060 Nitronate monooxygenase JDM601_2406 PF00037 4Fe-4S binding domain JDM601_2408 PF13193 AMP-binding enzyme C-terminal domain JDM601_2408 PF00501 AMP-binding enzyme JDM601_2409 PF00378 Enoyl-CoA hydratase/isomerase JDM601_2410 PF09335 SNARE associated Golgi protein JDM601_2412 PF11738 Protein of unknown function (DUF3298) JDM601_2414 PF02861 Clp amino terminal domain, pathogenicity island component JDM601_2417 PF00186 Dihydrofolate reductase JDM601_2419 PF09594 Glycosyltransferase family 87 JDM601_2420 PF01641 SelR domain JDM601_2424 PF01208 Uroporphyrinogen decarboxylase (URO-D) JDM601_2427 PF02780 Transketolase, C-terminal domain JDM601_2427 PF02779 Transketolase, pyrimidine binding domain JDM601_2427 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JDM601_2430 PF03600 Citrate transporter JDM601_2431 PF01938 TRAM domain JDM601_2431 PF05958 tRNA (Uracil-5-)-methyltransferase JDM601_2432 PF13520 Amino acid permease JDM601_2433 PF02254 TrkA-N domain JDM601_2433 PF02080 TrkA-C domain JDM601_2435 PF02254 TrkA-N domain JDM601_2435 PF02080 TrkA-C domain JDM601_2439 PF00692 dUTPase JDM601_2443 PF00480 ROK family JDM601_2444 PF04539 Sigma-70 region 3 JDM601_2444 PF04545 Sigma-70, region 4 JDM601_2444 PF00140 Sigma-70 factor, region 1.2 JDM601_2444 PF04542 Sigma-70 region 2 JDM601_2445 PF00891 O-methyltransferase domain JDM601_2452 PF04539 Sigma-70 region 3 JDM601_2452 PF00140 Sigma-70 factor, region 1.2 JDM601_2452 PF04542 Sigma-70 region 2 JDM601_2452 PF04545 Sigma-70, region 4 JDM601_2453 PF02742 Iron dependent repressor, metal binding and dimerisation domain JDM601_2453 PF01325 Iron dependent repressor, N-terminal DNA binding domain JDM601_2453 PF18357 Diphteria toxin repressor SH3 domain JDM601_2456 PF08768 Domain of unknown function (DUF1794) JDM601_2457 PF03477 ATP cone domain JDM601_2459 PF00717 Peptidase S24-like JDM601_2459 PF01726 LexA DNA binding domain JDM601_2460 PF01227 GTP cyclohydrolase I JDM601_2462 PF03060 Nitronate monooxygenase JDM601_2465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_2465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_2465 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_2466 PF00270 DEAD/DEAH box helicase JDM601_2466 PF00271 Helicase conserved C-terminal domain JDM601_2467 PF16360 GTP-binding GTPase Middle Region JDM601_2467 PF13167 GTP-binding GTPase N-terminal JDM601_2467 PF01926 50S ribosome-binding GTPase JDM601_2468 PF01678 Diaminopimelate epimerase JDM601_2472 PF03993 Domain of Unknown Function (DUF349) JDM601_2473 PF03364 Polyketide cyclase / dehydrase and lipid transport JDM601_2474 PF00919 Uncharacterized protein family UPF0004 JDM601_2474 PF04055 Radical SAM superfamily JDM601_2476 PF04055 Radical SAM superfamily JDM601_2476 PF00919 Uncharacterized protein family UPF0004 JDM601_2477 PF00005 ABC transporter JDM601_2478 PF00497 Bacterial extracellular solute-binding proteins, family 3 JDM601_2479 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_2480 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_2482 PF02631 RecX family JDM601_2483 PF00154 recA bacterial DNA recombination protein JDM601_2483 PF03161 LAGLIDADG DNA endonuclease family JDM601_2488 PF07858 Limonene-1,2-epoxide hydrolase catalytic domain JDM601_2489 PF17240 Family of unknown function (DUF5313) JDM601_2496 PF00583 Acetyltransferase (GNAT) family JDM601_2498 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JDM601_2498 PF06974 Protein of unknown function (DUF1298) JDM601_2499 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JDM601_2499 PF09397 Ftsk gamma domain JDM601_2499 PF01580 FtsK/SpoIIIE family JDM601_2499 PF17854 FtsK alpha domain JDM601_2502 PF17770 Ribonuclease J C-terminal domain JDM601_2502 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JDM601_2502 PF12706 Beta-lactamase superfamily domain JDM601_2503 PF00701 Dihydrodipicolinate synthetase family JDM601_2504 PF02511 Thymidylate synthase complementing protein JDM601_2505 PF14032 PknH-like extracellular domain JDM601_2505 PF00069 Protein kinase domain JDM601_2508 PF06224 Winged helix DNA-binding domain JDM601_2509 PF00186 Dihydrofolate reductase JDM601_2510 PF00303 Thymidylate synthase JDM601_2512 PF07690 Major Facilitator Superfamily JDM601_2512 PF00083 Sugar (and other) transporter JDM601_2515 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_2515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_2515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_2518 PF02646 RmuC family JDM601_2519 PF00289 Biotin carboxylase, N-terminal domain JDM601_2519 PF02785 Biotin carboxylase C-terminal domain JDM601_2519 PF00364 Biotin-requiring enzyme JDM601_2519 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JDM601_2520 PF00501 AMP-binding enzyme JDM601_2520 PF13193 AMP-binding enzyme C-terminal domain JDM601_2526 PF05173 Dihydrodipicolinate reductase, C-terminus JDM601_2526 PF01113 Dihydrodipicolinate reductase, N-terminus JDM601_2527 PF07859 alpha/beta hydrolase fold JDM601_2528 PF00175 Oxidoreductase NAD-binding domain JDM601_2528 PF00111 2Fe-2S iron-sulfur cluster binding domain JDM601_2528 PF00970 Oxidoreductase FAD-binding domain JDM601_2529 PF00561 alpha/beta hydrolase fold JDM601_2531 PF00934 PE family JDM601_2532 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_2532 PF00823 PPE family JDM601_2533 PF03060 Nitronate monooxygenase JDM601_2534 PF05193 Peptidase M16 inactive domain JDM601_2534 PF00675 Insulinase (Peptidase family M16) JDM601_2535 PF00013 KH domain JDM601_2535 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JDM601_2535 PF03725 3' exoribonuclease family, domain 2 JDM601_2535 PF00575 S1 RNA binding domain JDM601_2535 PF01138 3' exoribonuclease family, domain 1 JDM601_2537 PF00312 Ribosomal protein S15 JDM601_2538 PF01687 Riboflavin kinase JDM601_2538 PF06574 FAD synthetase JDM601_2541 PF10604 Polyketide cyclase / dehydrase and lipid transport JDM601_2542 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_2542 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_2542 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_2543 PF00106 short chain dehydrogenase JDM601_2546 PF02803 Thiolase, C-terminal domain JDM601_2546 PF00108 Thiolase, N-terminal domain JDM601_2547 PF00440 Bacterial regulatory proteins, tetR family JDM601_2549 PF01509 TruB family pseudouridylate synthase (N terminal domain) JDM601_2549 PF09142 tRNA Pseudouridine synthase II, C terminal JDM601_2549 PF16198 tRNA pseudouridylate synthase B C-terminal domain JDM601_2550 PF17837 4'-phosphopantetheinyl transferase N-terminal domain JDM601_2550 PF01648 4'-phosphopantetheinyl transferase superfamily JDM601_2555 PF00823 PPE family JDM601_2559 PF00378 Enoyl-CoA hydratase/isomerase JDM601_2561 PF02272 DHHA1 domain JDM601_2561 PF01368 DHH family JDM601_2562 PF02033 Ribosome-binding factor A JDM601_2563 PF04760 Translation initiation factor IF-2, N-terminal region JDM601_2563 PF11987 Translation-initiation factor 2 JDM601_2563 PF00009 Elongation factor Tu GTP binding domain JDM601_2565 PF13184 NusA-like KH domain JDM601_2565 PF08529 NusA N-terminal domain JDM601_2566 PF17384 RimP C-terminal SH3 domain JDM601_2566 PF02576 RimP N-terminal domain JDM601_2569 PF03129 Anticodon binding domain JDM601_2569 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JDM601_2569 PF04073 Aminoacyl-tRNA editing domain JDM601_2570 PF07690 Major Facilitator Superfamily JDM601_2571 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JDM601_2571 PF14824 Sirohaem biosynthesis protein central JDM601_2571 PF10414 Sirohaem synthase dimerisation region JDM601_2572 PF06039 Malate:quinone oxidoreductase (Mqo) JDM601_2573 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_2573 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JDM601_2574 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_2574 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_2574 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_2574 PF12806 Acetyl-CoA dehydrogenase C-terminal like JDM601_2577 PF02720 Domain of unknown function (DUF222) JDM601_2579 PF00171 Aldehyde dehydrogenase family JDM601_2580 PF07722 Peptidase C26 JDM601_2581 PF00120 Glutamine synthetase, catalytic domain JDM601_2582 PF00501 AMP-binding enzyme JDM601_2584 PF00557 Metallopeptidase family M24 JDM601_2588 PF04551 GcpE protein JDM601_2589 PF02163 Peptidase family M50 JDM601_2589 PF17820 PDZ domain JDM601_2590 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JDM601_2590 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JDM601_2590 PF13288 DXP reductoisomerase C-terminal domain JDM601_2595 PF00440 Bacterial regulatory proteins, tetR family JDM601_2596 PF10939 Protein of unknown function (DUF2631) JDM601_2597 PF04055 Radical SAM superfamily JDM601_2599 PF01765 Ribosome recycling factor JDM601_2600 PF00696 Amino acid kinase family JDM601_2602 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JDM601_2603 PF00361 Proton-conducting membrane transporter JDM601_2606 PF00361 Proton-conducting membrane transporter JDM601_2606 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JDM601_2607 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JDM601_2607 PF00374 Nickel-dependent hydrogenase JDM601_2607 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JDM601_2608 PF01047 MarR family JDM601_2609 PF01425 Amidase JDM601_2610 PF00889 Elongation factor TS JDM601_2611 PF00318 Ribosomal protein S2 JDM601_2612 PF01551 Peptidase family M23 JDM601_2614 PF02899 Phage integrase, N-terminal SAM-like domain JDM601_2614 PF00589 Phage integrase family JDM601_2615 PF01070 FMN-dependent dehydrogenase JDM601_2616 PF08021 Siderophore-interacting FAD-binding domain JDM601_2616 PF04954 Siderophore-interacting protein JDM601_2617 PF17782 DprA winged helix domain JDM601_2617 PF02481 DNA recombination-mediator protein A JDM601_2618 PF01078 Magnesium chelatase, subunit ChlI JDM601_2618 PF13335 Magnesium chelatase, subunit ChlI C-terminal JDM601_2619 PF02021 Uncharacterised protein family UPF0102 JDM601_2621 PF08237 PE-PPE domain JDM601_2621 PF00823 PPE family JDM601_2623 PF10611 Protein of unknown function (DUF2469) JDM601_2624 PF01351 Ribonuclease HII JDM601_2625 PF10502 Signal peptidase, peptidase S26 JDM601_2626 PF01245 Ribosomal protein L19 JDM601_2627 PF01746 tRNA (Guanine-1)-methyltransferase JDM601_2629 PF01782 RimM N-terminal domain JDM601_2629 PF05239 PRC-barrel domain JDM601_2631 PF00886 Ribosomal protein S16 JDM601_2632 PF13577 SnoaL-like domain JDM601_2633 PF00768 D-alanyl-D-alanine carboxypeptidase JDM601_2633 PF07943 Penicillin-binding protein 5, C-terminal domain JDM601_2634 PF01979 Amidohydrolase family JDM601_2635 PF00448 SRP54-type protein, GTPase domain JDM601_2635 PF02881 SRP54-type protein, helical bundle domain JDM601_2635 PF02978 Signal peptide binding domain JDM601_2638 PF13977 BetI-type transcriptional repressor, C-terminal JDM601_2638 PF00440 Bacterial regulatory proteins, tetR family JDM601_2640 PF00378 Enoyl-CoA hydratase/isomerase JDM601_2641 PF08237 PE-PPE domain JDM601_2641 PF00823 PPE family JDM601_2642 PF00106 short chain dehydrogenase JDM601_2645 PF00293 NUDIX domain JDM601_2646 PF01341 Glycosyl hydrolases family 6 JDM601_2646 PF00553 Cellulose binding domain JDM601_2647 PF00448 SRP54-type protein, GTPase domain JDM601_2647 PF02881 SRP54-type protein, helical bundle domain JDM601_2648 PF02463 RecF/RecN/SMC N terminal domain JDM601_2648 PF06470 SMC proteins Flexible Hinge Domain JDM601_2650 PF00708 Acylphosphatase JDM601_2651 PF02566 OsmC-like protein JDM601_2653 PF17874 MalT-like TPR region JDM601_2653 PF00196 Bacterial regulatory proteins, luxR family JDM601_2654 PF01965 DJ-1/PfpI family JDM601_2655 PF02585 GlcNAc-PI de-N-acetylase JDM601_2656 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JDM601_2656 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JDM601_2656 PF06827 Zinc finger found in FPG and IleRS JDM601_2657 PF00035 Double-stranded RNA binding motif JDM601_2657 PF14622 Ribonuclease-III-like JDM601_2658 PF02620 Large ribosomal RNA subunit accumulation protein YceD JDM601_2660 PF01842 ACT domain JDM601_2660 PF00551 Formyl transferase JDM601_2668 PF01467 Cytidylyltransferase-like JDM601_2670 PF02785 Biotin carboxylase C-terminal domain JDM601_2670 PF00364 Biotin-requiring enzyme JDM601_2670 PF00289 Biotin carboxylase, N-terminal domain JDM601_2670 PF00682 HMGL-like JDM601_2670 PF02436 Conserved carboxylase domain JDM601_2670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JDM601_2673 PF07859 alpha/beta hydrolase fold JDM601_2674 PF00248 Aldo/keto reductase family JDM601_2675 PF00248 Aldo/keto reductase family JDM601_2677 PF17191 RecG wedge domain JDM601_2677 PF00270 DEAD/DEAH box helicase JDM601_2677 PF00271 Helicase conserved C-terminal domain JDM601_2678 PF02734 DAK2 domain JDM601_2678 PF13684 Dihydroxyacetone kinase family JDM601_2679 PF00830 Ribosomal L28 family JDM601_2680 PF03167 Uracil DNA glycosylase superfamily JDM601_2682 PF02769 AIR synthase related protein, C-terminal domain JDM601_2682 PF00586 AIR synthase related protein, N-terminal domain JDM601_2684 PF01820 D-ala D-ala ligase N-terminus JDM601_2684 PF07478 D-ala D-ala ligase C-terminus JDM601_2685 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JDM601_2685 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JDM601_2687 PF02503 Polyphosphate kinase middle domain JDM601_2687 PF13090 Polyphosphate kinase C-terminal domain 2 JDM601_2687 PF17941 Polyphosphate kinase C-terminal domain 1 JDM601_2687 PF13089 Polyphosphate kinase N-terminal domain JDM601_2688 PF00293 NUDIX domain JDM601_2688 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_2689 PF00216 Bacterial DNA-binding protein JDM601_2690 PF00694 Aconitase C-terminal domain JDM601_2691 PF00330 Aconitase family (aconitate hydratase) JDM601_2692 PF09339 IclR helix-turn-helix domain JDM601_2692 PF01614 Bacterial transcriptional regulator JDM601_2694 PF00749 tRNA synthetases class I (E and Q), catalytic domain JDM601_2695 PF01557 Fumarylacetoacetate (FAA) hydrolase family JDM601_2696 PF07690 Major Facilitator Superfamily JDM601_2697 PF00583 Acetyltransferase (GNAT) family JDM601_2698 PF00202 Aminotransferase class-III JDM601_2699 PF06339 Ectoine synthase JDM601_2700 PF05721 Phytanoyl-CoA dioxygenase (PhyH) JDM601_2702 PF01425 Amidase JDM601_2703 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JDM601_2706 PF00392 Bacterial regulatory proteins, gntR family JDM601_2706 PF07729 FCD domain JDM601_2707 PF01614 Bacterial transcriptional regulator JDM601_2707 PF09339 IclR helix-turn-helix domain JDM601_2708 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JDM601_2708 PF00355 Rieske [2Fe-2S] domain JDM601_2709 PF00866 Ring hydroxylating beta subunit JDM601_2711 PF00106 short chain dehydrogenase JDM601_2713 PF00775 Dioxygenase JDM601_2713 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal JDM601_2715 PF00206 Lyase JDM601_2715 PF10397 Adenylosuccinate lyase C-terminus JDM601_2716 PF02627 Carboxymuconolactone decarboxylase family JDM601_2717 PF00180 Isocitrate/isopropylmalate dehydrogenase JDM601_2718 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JDM601_2718 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JDM601_2718 PF01842 ACT domain JDM601_2720 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JDM601_2720 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JDM601_2721 PF10369 Small subunit of acetolactate synthase JDM601_2722 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JDM601_2722 PF00205 Thiamine pyrophosphate enzyme, central domain JDM601_2722 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JDM601_2724 PF00440 Bacterial regulatory proteins, tetR family JDM601_2724 PF13977 BetI-type transcriptional repressor, C-terminal JDM601_2725 PF10756 Bacterial PH domain JDM601_2728 PF02637 GatB domain JDM601_2728 PF02934 GatB/GatE catalytic domain JDM601_2729 PF03070 TENA/THI-4/PQQC family JDM601_2732 PF00365 Phosphofructokinase JDM601_2734 PF01425 Amidase JDM601_2735 PF02686 Glu-tRNAGln amidotransferase C subunit JDM601_2737 PF03120 NAD-dependent DNA ligase OB-fold domain JDM601_2737 PF00533 BRCA1 C Terminus (BRCT) domain JDM601_2737 PF12826 Helix-hairpin-helix motif JDM601_2737 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JDM601_2737 PF01653 NAD-dependent DNA ligase adenylation domain JDM601_2742 PF00266 Aminotransferase class-V JDM601_2748 PF01012 Electron transfer flavoprotein domain JDM601_2748 PF00766 Electron transfer flavoprotein FAD-binding domain JDM601_2749 PF01012 Electron transfer flavoprotein domain JDM601_2750 PF08241 Methyltransferase domain JDM601_2751 PF03065 Glycosyl hydrolase family 57 JDM601_2751 PF09210 Domain of unknown function (DUF1957) JDM601_2752 PF13439 Glycosyltransferase Family 4 JDM601_2752 PF00534 Glycosyl transferases group 1 JDM601_2754 PF03176 MMPL family JDM601_2755 PF00296 Luciferase-like monooxygenase JDM601_2758 PF00132 Bacterial transferase hexapeptide (six repeats) JDM601_2759 PF13360 PQQ-like domain JDM601_2760 PF11738 Protein of unknown function (DUF3298) JDM601_2761 PF18096 THUMP domain-like JDM601_2763 PF00934 PE family JDM601_2763 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_2764 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_2764 PF00934 PE family JDM601_2765 PF00934 PE family JDM601_2765 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_2766 PF00378 Enoyl-CoA hydratase/isomerase JDM601_2768 PF00005 ABC transporter JDM601_2769 PF08237 PE-PPE domain JDM601_2769 PF00823 PPE family JDM601_2771 PF00115 Cytochrome C and Quinol oxidase polypeptide I JDM601_2774 PF01497 Periplasmic binding protein JDM601_2776 PF12697 Alpha/beta hydrolase family JDM601_2777 PF00107 Zinc-binding dehydrogenase JDM601_2777 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_2779 PF07690 Major Facilitator Superfamily JDM601_2780 PF00268 Ribonucleotide reductase, small chain JDM601_2781 PF00743 Flavin-binding monooxygenase-like JDM601_2782 PF00440 Bacterial regulatory proteins, tetR family JDM601_2783 PF01494 FAD binding domain JDM601_2787 PF08343 Ribonucleotide reductase N-terminal JDM601_2787 PF00317 Ribonucleotide reductase, all-alpha domain JDM601_2787 PF02867 Ribonucleotide reductase, barrel domain JDM601_2788 PF07972 NrdI Flavodoxin like JDM601_2790 PF03358 NADPH-dependent FMN reductase JDM601_2791 PF00106 short chain dehydrogenase JDM601_2793 PF00067 Cytochrome P450 JDM601_2794 PF00067 Cytochrome P450 JDM601_2796 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JDM601_2796 PF00205 Thiamine pyrophosphate enzyme, central domain JDM601_2796 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JDM601_2797 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_2797 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_2797 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_2798 PF00106 short chain dehydrogenase JDM601_2799 PF13722 5TM C-terminal transporter carbon starvation CstA JDM601_2799 PF02554 Carbon starvation protein CstA JDM601_2801 PF03109 ABC1 family JDM601_2802 PF17964 Bacterial Ig domain JDM601_2802 PF03734 L,D-transpeptidase catalytic domain JDM601_2803 PF00067 Cytochrome P450 JDM601_2804 PF00753 Metallo-beta-lactamase superfamily JDM601_2806 PF00596 Class II Aldolase and Adducin N-terminal domain JDM601_2808 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JDM601_2808 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JDM601_2810 PF01272 Transcription elongation factor, GreA/GreB, C-term JDM601_2810 PF03449 Transcription elongation factor, N-terminal JDM601_2811 PF01266 FAD dependent oxidoreductase JDM601_2815 PF04343 Protein of unknown function, DUF488 JDM601_2817 PF00823 PPE family JDM601_2819 PF12538 DNA transporter JDM601_2819 PF01580 FtsK/SpoIIIE family JDM601_2828 PF00069 Protein kinase domain JDM601_2836 PF00196 Bacterial regulatory proteins, luxR family JDM601_2836 PF00072 Response regulator receiver domain JDM601_2840 PF01668 SmpB protein JDM601_2841 PF02687 FtsX-like permease family JDM601_2841 PF18075 FtsX extracellular domain JDM601_2842 PF00005 ABC transporter JDM601_2844 PF00924 Mechanosensitive ion channel JDM601_2845 PF00472 RF-1 domain JDM601_2845 PF03462 PCRF domain JDM601_2846 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_2848 PF00459 Inositol monophosphatase family JDM601_2850 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_2850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_2850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_2853 PF02515 CoA-transferase family III JDM601_2854 PF00682 HMGL-like JDM601_2856 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_2856 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_2856 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_2859 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JDM601_2860 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JDM601_2861 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JDM601_2862 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JDM601_2864 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JDM601_2864 PF10531 SLBB domain JDM601_2864 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JDM601_2865 PF00384 Molybdopterin oxidoreductase JDM601_2865 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JDM601_2865 PF01568 Molydopterin dinucleotide binding domain JDM601_2866 PF00146 NADH dehydrogenase JDM601_2867 PF12838 4Fe-4S dicluster domain JDM601_2868 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JDM601_2869 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JDM601_2870 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JDM601_2870 PF00361 Proton-conducting membrane transporter JDM601_2871 PF00361 Proton-conducting membrane transporter JDM601_2872 PF00361 Proton-conducting membrane transporter JDM601_2873 PF00111 2Fe-2S iron-sulfur cluster binding domain JDM601_2873 PF00175 Oxidoreductase NAD-binding domain JDM601_2873 PF00970 Oxidoreductase FAD-binding domain JDM601_2874 PF00487 Fatty acid desaturase JDM601_2876 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JDM601_2876 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JDM601_2877 PF02585 GlcNAc-PI de-N-acetylase JDM601_2878 PF16859 Tetracyclin repressor-like, C-terminal domain JDM601_2878 PF00440 Bacterial regulatory proteins, tetR family JDM601_2879 PF01636 Phosphotransferase enzyme family JDM601_2880 PF00296 Luciferase-like monooxygenase JDM601_2885 PF00743 Flavin-binding monooxygenase-like JDM601_2886 PF00440 Bacterial regulatory proteins, tetR family JDM601_2887 PF02667 Short chain fatty acid transporter JDM601_2891 PF02405 Permease MlaE JDM601_2892 PF02405 Permease MlaE JDM601_2902 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) JDM601_2905 PF03699 Uncharacterised protein family (UPF0182) JDM601_2906 PF05362 Lon protease (S16) C-terminal proteolytic domain JDM601_2906 PF13180 PDZ domain JDM601_2910 PF03109 ABC1 family JDM601_2911 PF02467 Transcription factor WhiB JDM601_2912 PF00570 HRDC domain JDM601_2912 PF00580 UvrD/REP helicase N-terminal domain JDM601_2912 PF13361 UvrD-like helicase C-terminal domain JDM601_2913 PF00462 Glutaredoxin JDM601_2914 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain JDM601_2914 PF09297 NADH pyrophosphatase zinc ribbon domain JDM601_2914 PF00293 NUDIX domain JDM601_2916 PF00580 UvrD/REP helicase N-terminal domain JDM601_2916 PF13361 UvrD-like helicase C-terminal domain JDM601_2918 PF12697 Alpha/beta hydrolase family JDM601_2921 PF00581 Rhodanese-like domain JDM601_2921 PF00899 ThiF family JDM601_2923 PF08361 MAATS-type transcriptional repressor, C-terminal region JDM601_2923 PF00440 Bacterial regulatory proteins, tetR family JDM601_2926 PF00271 Helicase conserved C-terminal domain JDM601_2926 PF00270 DEAD/DEAH box helicase JDM601_2928 PF13614 AAA domain JDM601_2929 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_2930 PF00425 chorismate binding enzyme JDM601_2931 PF00781 Diacylglycerol kinase catalytic domain JDM601_2932 PF02467 Transcription factor WhiB JDM601_2933 PF07568 Histidine kinase JDM601_2933 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_2933 PF12282 Signal transduction histidine kinase JDM601_2934 PF00364 Biotin-requiring enzyme JDM601_2936 PF13490 Putative zinc-finger JDM601_2937 PF08281 Sigma-70, region 4 JDM601_2937 PF04542 Sigma-70 region 2 JDM601_2940 PF05532 CsbD-like JDM601_2943 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_2943 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_2943 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_2944 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_2944 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_2944 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_2945 PF01144 Coenzyme A transferase JDM601_2946 PF00440 Bacterial regulatory proteins, tetR family JDM601_2946 PF08359 YsiA-like protein, C-terminal region JDM601_2947 PF01144 Coenzyme A transferase JDM601_2952 PF00512 His Kinase A (phospho-acceptor) domain JDM601_2952 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_2952 PF00672 HAMP domain JDM601_2953 PF00486 Transcriptional regulatory protein, C terminal JDM601_2953 PF00072 Response regulator receiver domain JDM601_2954 PF00823 PPE family JDM601_2954 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_2955 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_2955 PF00823 PPE family JDM601_2956 PF02586 SOS response associated peptidase (SRAP) JDM601_2957 PF13847 Methyltransferase domain JDM601_2958 PF00296 Luciferase-like monooxygenase JDM601_2959 PF00934 PE family JDM601_2960 PF00823 PPE family JDM601_2960 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_2961 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_2961 PF00823 PPE family JDM601_2962 PF00069 Protein kinase domain JDM601_2963 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JDM601_2964 PF03193 RsgA GTPase JDM601_2965 PF00487 Fatty acid desaturase JDM601_2966 PF00970 Oxidoreductase FAD-binding domain JDM601_2966 PF00175 Oxidoreductase NAD-binding domain JDM601_2966 PF00111 2Fe-2S iron-sulfur cluster binding domain JDM601_2968 PF03976 Polyphosphate kinase 2 (PPK2) JDM601_2969 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JDM601_2971 PF01043 SecA preprotein cross-linking domain JDM601_2971 PF07516 SecA Wing and Scaffold domain JDM601_2971 PF07517 SecA DEAD-like domain JDM601_2972 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JDM601_2972 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JDM601_2976 PF01145 SPFH domain / Band 7 family JDM601_2978 PF00072 Response regulator receiver domain JDM601_2978 PF00196 Bacterial regulatory proteins, luxR family JDM601_2979 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_2979 PF07730 Histidine kinase JDM601_2979 PF13185 GAF domain JDM601_2982 PF00072 Response regulator receiver domain JDM601_2982 PF01339 CheB methylesterase JDM601_2983 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JDM601_2983 PF06974 Protein of unknown function (DUF1298) JDM601_2984 PF10647 Lipoprotein LpqB beta-propeller domain JDM601_2984 PF10646 Sporulation and spore germination JDM601_2985 PF00672 HAMP domain JDM601_2985 PF00512 His Kinase A (phospho-acceptor) domain JDM601_2985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_2986 PF00072 Response regulator receiver domain JDM601_2986 PF00486 Transcriptional regulatory protein, C terminal JDM601_2987 PF02223 Thymidylate kinase JDM601_2988 PF05221 S-adenosyl-L-homocysteine hydrolase JDM601_2988 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JDM601_2990 PF00301 Rubredoxin JDM601_2991 PF00487 Fatty acid desaturase JDM601_2992 PF00672 HAMP domain JDM601_2992 PF00211 Adenylate and Guanylate cyclase catalytic domain JDM601_2995 PF00534 Glycosyl transferases group 1 JDM601_2995 PF13439 Glycosyltransferase Family 4 JDM601_2996 PF01209 ubiE/COQ5 methyltransferase family JDM601_2999 PF00440 Bacterial regulatory proteins, tetR family JDM601_3004 PF01238 Phosphomannose isomerase type I JDM601_3006 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JDM601_3006 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JDM601_3006 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JDM601_3006 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JDM601_3009 PF02467 Transcription factor WhiB JDM601_3011 PF01996 F420-0:Gamma-glutamyl ligase JDM601_3011 PF00881 Nitroreductase family JDM601_3015 PF00483 Nucleotidyl transferase JDM601_3017 PF04321 RmlD substrate binding domain JDM601_3018 PF13399 LytR cell envelope-related transcriptional attenuator JDM601_3018 PF03816 Cell envelope-related transcriptional attenuator domain JDM601_3020 PF07371 Protein of unknown function (DUF1490) JDM601_3024 PF00069 Protein kinase domain JDM601_3024 PF01436 NHL repeat JDM601_3024 PF08450 SMP-30/Gluconolactonase/LRE-like region JDM601_3025 PF12849 PBP superfamily domain JDM601_3026 PF02515 CoA-transferase family III JDM601_3027 PF00871 Acetokinase family JDM601_3028 PF07085 DRTGG domain JDM601_3028 PF01515 Phosphate acetyl/butaryl transferase JDM601_3031 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3031 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3031 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3032 PF00731 AIR carboxylase JDM601_3033 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JDM601_3033 PF02222 ATP-grasp domain JDM601_3036 PF08279 HTH domain JDM601_3036 PF02237 Biotin protein ligase C terminal domain JDM601_3036 PF03099 Biotin/lipoate A/B protein ligase family JDM601_3037 PF07859 alpha/beta hydrolase fold JDM601_3038 PF01068 ATP dependent DNA ligase domain JDM601_3038 PF13298 DNA polymerase Ligase (LigD) JDM601_3038 PF04679 ATP dependent DNA ligase C terminal region JDM601_3039 PF01039 Carboxyl transferase domain JDM601_3041 PF02545 Maf-like protein JDM601_3043 PF00581 Rhodanese-like domain JDM601_3044 PF02657 Fe-S metabolism associated domain JDM601_3045 PF02785 Biotin carboxylase C-terminal domain JDM601_3045 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JDM601_3045 PF00364 Biotin-requiring enzyme JDM601_3045 PF00289 Biotin carboxylase, N-terminal domain JDM601_3047 PF00296 Luciferase-like monooxygenase JDM601_3050 PF00199 Catalase JDM601_3050 PF06628 Catalase-related immune-responsive JDM601_3050 PF18011 C-terminal domain found in long catalases JDM601_3051 PF13419 Haloacid dehalogenase-like hydrolase JDM601_3056 PF18844 Bacterial archaeo-eukaryotic release factor family 2 JDM601_3057 PF02720 Domain of unknown function (DUF222) JDM601_3058 PF00106 short chain dehydrogenase JDM601_3059 PF05199 GMC oxidoreductase JDM601_3059 PF00732 GMC oxidoreductase JDM601_3067 PF00011 Hsp20/alpha crystallin family JDM601_3068 PF13411 MerR HTH family regulatory protein JDM601_3071 PF05175 Methyltransferase small domain JDM601_3071 PF17827 PrmC N-terminal domain JDM601_3072 PF00205 Thiamine pyrophosphate enzyme, central domain JDM601_3072 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JDM601_3072 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JDM601_3073 PF03167 Uracil DNA glycosylase superfamily JDM601_3079 PF00534 Glycosyl transferases group 1 JDM601_3079 PF13439 Glycosyltransferase Family 4 JDM601_3081 PF08946 Osmosensory transporter coiled coil JDM601_3081 PF00083 Sugar (and other) transporter JDM601_3084 PF00756 Putative esterase JDM601_3087 PF01276 Orn/Lys/Arg decarboxylase, major domain JDM601_3087 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JDM601_3089 PF01965 DJ-1/PfpI family JDM601_3093 PF00174 Oxidoreductase molybdopterin binding domain JDM601_3098 PF13378 Enolase C-terminal domain-like JDM601_3098 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JDM601_3099 PF13823 Alcohol dehydrogenase GroES-associated JDM601_3099 PF00107 Zinc-binding dehydrogenase JDM601_3099 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_3102 PF00355 Rieske [2Fe-2S] domain JDM601_3105 PF04545 Sigma-70, region 4 JDM601_3105 PF04539 Sigma-70 region 3 JDM601_3105 PF04542 Sigma-70 region 2 JDM601_3110 PF00486 Transcriptional regulatory protein, C terminal JDM601_3115 PF00270 DEAD/DEAH box helicase JDM601_3115 PF00271 Helicase conserved C-terminal domain JDM601_3115 PF08494 DEAD/H associated JDM601_3116 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JDM601_3116 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JDM601_3120 PF00849 RNA pseudouridylate synthase JDM601_3122 PF02720 Domain of unknown function (DUF222) JDM601_3125 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JDM601_3125 PF01266 FAD dependent oxidoreductase JDM601_3126 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_3126 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JDM601_3129 PF04107 Glutamate-cysteine ligase family 2(GCS2) JDM601_3129 PF01546 Peptidase family M20/M25/M40 JDM601_3131 PF01048 Phosphorylase superfamily JDM601_3133 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JDM601_3133 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JDM601_3133 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JDM601_3133 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JDM601_3135 PF00823 PPE family JDM601_3135 PF08237 PE-PPE domain JDM601_3136 PF08237 PE-PPE domain JDM601_3136 PF00823 PPE family JDM601_3140 PF00962 Adenosine/AMP deaminase JDM601_3141 PF02885 Glycosyl transferase family, helical bundle domain JDM601_3141 PF00591 Glycosyl transferase family, a/b domain JDM601_3141 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JDM601_3142 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JDM601_3143 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JDM601_3145 PF00890 FAD binding domain JDM601_3145 PF02910 Fumarate reductase flavoprotein C-term JDM601_3146 PF13183 4Fe-4S dicluster domain JDM601_3146 PF13085 2Fe-2S iron-sulfur cluster binding domain JDM601_3148 PF02627 Carboxymuconolactone decarboxylase family JDM601_3149 PF12680 SnoaL-like domain JDM601_3149 PF04542 Sigma-70 region 2 JDM601_3149 PF08281 Sigma-70, region 4 JDM601_3152 PF07943 Penicillin-binding protein 5, C-terminal domain JDM601_3152 PF00768 D-alanyl-D-alanine carboxypeptidase JDM601_3154 PF00083 Sugar (and other) transporter JDM601_3155 PF01979 Amidohydrolase family JDM601_3159 PF00579 tRNA synthetases class I (W and Y) JDM601_3163 PF02570 Precorrin-8X methylmutase JDM601_3164 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JDM601_3165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JDM601_3166 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JDM601_3167 PF07728 AAA domain (dynein-related subfamily) JDM601_3167 PF13519 von Willebrand factor type A domain JDM601_3167 PF17863 AAA lid domain JDM601_3168 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JDM601_3169 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JDM601_3169 PF07685 CobB/CobQ-like glutamine amidotransferase domain JDM601_3170 PF03186 CobD/Cbib protein JDM601_3170 PF17113 Regulatory signalling modulator protein AmpE JDM601_3175 PF03992 Antibiotic biosynthesis monooxygenase JDM601_3176 PF02571 Precorrin-6x reductase CbiJ/CobK JDM601_3178 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JDM601_3178 PF07685 CobB/CobQ-like glutamine amidotransferase domain JDM601_3179 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JDM601_3180 PF02514 CobN/Magnesium Chelatase JDM601_3182 PF01032 FecCD transport family JDM601_3183 PF00005 ABC transporter JDM601_3185 PF00823 PPE family JDM601_3186 PF00823 PPE family JDM601_3187 PF03971 Monomeric isocitrate dehydrogenase JDM601_3189 PF01053 Cys/Met metabolism PLP-dependent enzyme JDM601_3190 PF00561 alpha/beta hydrolase fold JDM601_3191 PF08241 Methyltransferase domain JDM601_3194 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JDM601_3194 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JDM601_3195 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JDM601_3195 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_3196 PF00005 ABC transporter JDM601_3196 PF01061 ABC-2 type transporter JDM601_3196 PF00498 FHA domain JDM601_3199 PF03259 Roadblock/LC7 domain JDM601_3202 PF00588 SpoU rRNA Methylase family JDM601_3205 PF02811 PHP domain JDM601_3205 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JDM601_3205 PF14579 Helix-hairpin-helix motif JDM601_3205 PF07733 Bacterial DNA polymerase III alpha NTPase domain JDM601_3206 PF05423 Mycobacterium membrane protein JDM601_3207 PF03176 MMPL family JDM601_3208 PF00582 Universal stress protein family JDM601_3209 PF02358 Trehalose-phosphatase JDM601_3210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3210 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3213 PF00300 Histidine phosphatase superfamily (branch 1) JDM601_3213 PF00934 PE family JDM601_3214 PF00106 short chain dehydrogenase JDM601_3215 PF01156 Inosine-uridine preferring nucleoside hydrolase JDM601_3218 PF00117 Glutamine amidotransferase class-I JDM601_3218 PF02540 NAD synthase JDM601_3218 PF00958 GMP synthase C terminal domain JDM601_3219 PF13419 Haloacid dehalogenase-like hydrolase JDM601_3220 PF03633 Glycosyl hydrolase family 65, C-terminal domain JDM601_3220 PF03632 Glycosyl hydrolase family 65 central catalytic domain JDM601_3220 PF03636 Glycosyl hydrolase family 65, N-terminal domain JDM601_3221 PF05199 GMC oxidoreductase JDM601_3222 PF00478 IMP dehydrogenase / GMP reductase domain JDM601_3223 PF00571 CBS domain JDM601_3223 PF00478 IMP dehydrogenase / GMP reductase domain JDM601_3225 PF17252 Family of unknown function (DUF5319) JDM601_3227 PF02467 Transcription factor WhiB JDM601_3230 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JDM601_3230 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JDM601_3237 PF00118 TCP-1/cpn60 chaperonin family JDM601_3238 PF00166 Chaperonin 10 Kd subunit JDM601_3239 PF00814 Glycoprotease family JDM601_3240 PF00814 Glycoprotease family JDM601_3240 PF00583 Acetyltransferase (GNAT) family JDM601_3241 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JDM601_3243 PF00842 Alanine racemase, C-terminal domain JDM601_3243 PF01168 Alanine racemase, N-terminal domain JDM601_3245 PF00282 Pyridoxal-dependent decarboxylase conserved domain JDM601_3246 PF01256 Carbohydrate kinase JDM601_3246 PF03853 YjeF-related protein N-terminus JDM601_3248 PF00743 Flavin-binding monooxygenase-like JDM601_3251 PF01380 SIS domain JDM601_3253 PF00501 AMP-binding enzyme JDM601_3259 PF00296 Luciferase-like monooxygenase JDM601_3262 PF00501 AMP-binding enzyme JDM601_3263 PF01850 PIN domain JDM601_3267 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JDM601_3267 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JDM601_3267 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JDM601_3267 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JDM601_3268 PF00380 Ribosomal protein S9/S16 JDM601_3269 PF00572 Ribosomal protein L13 JDM601_3270 PF06013 Proteins of 100 residues with WXG JDM601_3271 PF06013 Proteins of 100 residues with WXG JDM601_3273 PF01580 FtsK/SpoIIIE family JDM601_3274 PF08817 WXG100 protein secretion system (Wss), protein YukD JDM601_3275 PF00082 Subtilase family JDM601_3278 PF01416 tRNA pseudouridine synthase JDM601_3279 PF01196 Ribosomal protein L17 JDM601_3280 PF01000 RNA polymerase Rpb3/RpoA insert domain JDM601_3280 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JDM601_3280 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JDM601_3281 PF01479 S4 domain JDM601_3281 PF00163 Ribosomal protein S4/S9 N-terminal domain JDM601_3282 PF00411 Ribosomal protein S11 JDM601_3283 PF00416 Ribosomal protein S13/S18 JDM601_3284 PF00444 Ribosomal protein L36 JDM601_3285 PF01176 Translation initiation factor 1A / IF-1 JDM601_3287 PF16363 GDP-mannose 4,6 dehydratase JDM601_3288 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JDM601_3291 PF00171 Aldehyde dehydrogenase family JDM601_3292 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3292 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3292 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3293 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JDM601_3293 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JDM601_3296 PF00196 Bacterial regulatory proteins, luxR family JDM601_3296 PF00072 Response regulator receiver domain JDM601_3297 PF05384 Sensor protein DegS JDM601_3297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_3297 PF07730 Histidine kinase JDM601_3299 PF00557 Metallopeptidase family M24 JDM601_3301 PF00344 SecY translocase JDM601_3302 PF04072 Leucine carboxyl methyltransferase JDM601_3303 PF04072 Leucine carboxyl methyltransferase JDM601_3306 PF01343 Peptidase family S49 JDM601_3307 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_3307 PF00823 PPE family JDM601_3309 PF01343 Peptidase family S49 JDM601_3310 PF01343 Peptidase family S49 JDM601_3313 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JDM601_3314 PF00327 Ribosomal protein L30p/L7e JDM601_3315 PF00333 Ribosomal protein S5, N-terminal domain JDM601_3315 PF03719 Ribosomal protein S5, C-terminal domain JDM601_3316 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JDM601_3317 PF00347 Ribosomal protein L6 JDM601_3318 PF00410 Ribosomal protein S8 JDM601_3319 PF00253 Ribosomal protein S14p/S29e JDM601_3320 PF00281 Ribosomal protein L5 JDM601_3320 PF00673 ribosomal L5P family C-terminus JDM601_3321 PF00467 KOW motif JDM601_3321 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JDM601_3322 PF00238 Ribosomal protein L14p/L23e JDM601_3323 PF03781 Sulfatase-modifying factor enzyme 1 JDM601_3324 PF00884 Sulfatase JDM601_3325 PF03466 LysR substrate binding domain JDM601_3325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JDM601_3328 PF11203 Putative type VII ESX secretion system translocon, EccE JDM601_3329 PF00366 Ribosomal protein S17 JDM601_3330 PF00831 Ribosomal L29 protein JDM601_3331 PF00252 Ribosomal protein L16p/L10e JDM601_3332 PF00189 Ribosomal protein S3, C-terminal domain JDM601_3332 PF07650 KH domain JDM601_3333 PF00237 Ribosomal protein L22p/L17e JDM601_3334 PF00203 Ribosomal protein S19 JDM601_3335 PF00181 Ribosomal Proteins L2, RNA binding domain JDM601_3335 PF03947 Ribosomal Proteins L2, C-terminal domain JDM601_3336 PF00276 Ribosomal protein L23 JDM601_3337 PF00573 Ribosomal protein L4/L1 family JDM601_3338 PF00297 Ribosomal protein L3 JDM601_3339 PF00338 Ribosomal protein S10p/S20e JDM601_3341 PF00135 Carboxylesterase family JDM601_3343 PF05199 GMC oxidoreductase JDM601_3343 PF00732 GMC oxidoreductase JDM601_3344 PF00067 Cytochrome P450 JDM601_3345 PF00535 Glycosyl transferase family 2 JDM601_3346 PF02633 Creatinine amidohydrolase JDM601_3347 PF01070 FMN-dependent dehydrogenase JDM601_3348 PF13186 Iron-sulfur cluster-binding domain JDM601_3348 PF04055 Radical SAM superfamily JDM601_3351 PF00440 Bacterial regulatory proteins, tetR family JDM601_3351 PF17754 MftR C-terminal domain JDM601_3357 PF00355 Rieske [2Fe-2S] domain JDM601_3359 PF00171 Aldehyde dehydrogenase family JDM601_3360 PF13193 AMP-binding enzyme C-terminal domain JDM601_3360 PF00501 AMP-binding enzyme JDM601_3363 PF00067 Cytochrome P450 JDM601_3364 PF00067 Cytochrome P450 JDM601_3365 PF00171 Aldehyde dehydrogenase family JDM601_3367 PF02515 CoA-transferase family III JDM601_3368 PF16363 GDP-mannose 4,6 dehydratase JDM601_3370 PF00108 Thiolase, N-terminal domain JDM601_3370 PF02803 Thiolase, C-terminal domain JDM601_3372 PF00106 short chain dehydrogenase JDM601_3376 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3376 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3376 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3377 PF16363 GDP-mannose 4,6 dehydratase JDM601_3382 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JDM601_3385 PF12833 Helix-turn-helix domain JDM601_3385 PF02311 AraC-like ligand binding domain JDM601_3386 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3386 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3386 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3387 PF02627 Carboxymuconolactone decarboxylase family JDM601_3390 PF00501 AMP-binding enzyme JDM601_3390 PF13193 AMP-binding enzyme C-terminal domain JDM601_3392 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3393 PF00106 short chain dehydrogenase JDM601_3394 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3396 PF00108 Thiolase, N-terminal domain JDM601_3396 PF02803 Thiolase, C-terminal domain JDM601_3397 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3399 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3400 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3401 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3402 PF00501 AMP-binding enzyme JDM601_3402 PF13193 AMP-binding enzyme C-terminal domain JDM601_3403 PF00501 AMP-binding enzyme JDM601_3403 PF13193 AMP-binding enzyme C-terminal domain JDM601_3404 PF00501 AMP-binding enzyme JDM601_3404 PF13193 AMP-binding enzyme C-terminal domain JDM601_3405 PF01844 HNH endonuclease JDM601_3405 PF02720 Domain of unknown function (DUF222) JDM601_3406 PF00392 Bacterial regulatory proteins, gntR family JDM601_3406 PF07729 FCD domain JDM601_3408 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3408 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3408 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3409 PF00108 Thiolase, N-terminal domain JDM601_3409 PF02803 Thiolase, C-terminal domain JDM601_3411 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3411 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3411 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3413 PF00067 Cytochrome P450 JDM601_3414 PF00501 AMP-binding enzyme JDM601_3414 PF13193 AMP-binding enzyme C-terminal domain JDM601_3418 PF07728 AAA domain (dynein-related subfamily) JDM601_3418 PF08406 CbbQ/NirQ/NorQ C-terminal JDM601_3424 PF13193 AMP-binding enzyme C-terminal domain JDM601_3424 PF00501 AMP-binding enzyme JDM601_3426 PF00501 AMP-binding enzyme JDM601_3426 PF13193 AMP-binding enzyme C-terminal domain JDM601_3428 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3429 PF00067 Cytochrome P450 JDM601_3430 PF00067 Cytochrome P450 JDM601_3433 PF02515 CoA-transferase family III JDM601_3436 PF00557 Metallopeptidase family M24 JDM601_3436 PF01321 Creatinase/Prolidase N-terminal domain JDM601_3438 PF00067 Cytochrome P450 JDM601_3442 PF00067 Cytochrome P450 JDM601_3445 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JDM601_3445 PF00355 Rieske [2Fe-2S] domain JDM601_3446 PF00440 Bacterial regulatory proteins, tetR family JDM601_3446 PF08361 MAATS-type transcriptional repressor, C-terminal region JDM601_3447 PF00296 Luciferase-like monooxygenase JDM601_3449 PF00171 Aldehyde dehydrogenase family JDM601_3451 PF12697 Alpha/beta hydrolase family JDM601_3454 PF00106 short chain dehydrogenase JDM601_3455 PF00296 Luciferase-like monooxygenase JDM601_3456 PF00890 FAD binding domain JDM601_3457 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JDM601_3458 PF01494 FAD binding domain JDM601_3459 PF00561 alpha/beta hydrolase fold JDM601_3469 PF02470 MlaD protein JDM601_3477 PF02515 CoA-transferase family III JDM601_3478 PF00171 Aldehyde dehydrogenase family JDM601_3480 PF00106 short chain dehydrogenase JDM601_3483 PF00067 Cytochrome P450 JDM601_3484 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3484 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3484 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3485 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3491 PF10531 SLBB domain JDM601_3491 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JDM601_3491 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JDM601_3495 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JDM601_3495 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JDM601_3496 PF00067 Cytochrome P450 JDM601_3500 PF00067 Cytochrome P450 JDM601_3503 PF00355 Rieske [2Fe-2S] domain JDM601_3503 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JDM601_3507 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3507 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3507 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3508 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3508 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3508 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3509 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3509 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3509 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3511 PF00171 Aldehyde dehydrogenase family JDM601_3512 PF05173 Dihydrodipicolinate reductase, C-terminus JDM601_3512 PF01113 Dihydrodipicolinate reductase, N-terminus JDM601_3514 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3515 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3516 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3516 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3516 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3517 PF13193 AMP-binding enzyme C-terminal domain JDM601_3517 PF00501 AMP-binding enzyme JDM601_3518 PF00970 Oxidoreductase FAD-binding domain JDM601_3518 PF00111 2Fe-2S iron-sulfur cluster binding domain JDM601_3518 PF00175 Oxidoreductase NAD-binding domain JDM601_3519 PF00171 Aldehyde dehydrogenase family JDM601_3522 PF00743 Flavin-binding monooxygenase-like JDM601_3526 PF03405 Fatty acid desaturase JDM601_3527 PF01207 Dihydrouridine synthase (Dus) JDM601_3529 PF01895 PhoU domain JDM601_3530 PF12849 PBP superfamily domain JDM601_3531 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_3532 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_3533 PF01436 NHL repeat JDM601_3533 PF00069 Protein kinase domain JDM601_3533 PF08450 SMP-30/Gluconolactonase/LRE-like region JDM601_3534 PF12849 PBP superfamily domain JDM601_3535 PF00005 ABC transporter JDM601_3536 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_3537 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_3538 PF12849 PBP superfamily domain JDM601_3540 PF00583 Acetyltransferase (GNAT) family JDM601_3541 PF00486 Transcriptional regulatory protein, C terminal JDM601_3543 PF00085 Thioredoxin JDM601_3545 PF00581 Rhodanese-like domain JDM601_3546 PF07210 Protein of unknown function (DUF1416) JDM601_3547 PF08768 Domain of unknown function (DUF1794) JDM601_3549 PF01571 Aminomethyltransferase folate-binding domain JDM601_3551 PF02769 AIR synthase related protein, C-terminal domain JDM601_3551 PF00586 AIR synthase related protein, N-terminal domain JDM601_3552 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3552 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3552 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3553 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3553 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3553 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3558 PF08361 MAATS-type transcriptional repressor, C-terminal region JDM601_3558 PF00440 Bacterial regulatory proteins, tetR family JDM601_3560 PF08406 CbbQ/NirQ/NorQ C-terminal JDM601_3560 PF07728 AAA domain (dynein-related subfamily) JDM601_3563 PF01979 Amidohydrolase family JDM601_3565 PF00355 Rieske [2Fe-2S] domain JDM601_3566 PF00156 Phosphoribosyl transferase domain JDM601_3569 PF00586 AIR synthase related protein, N-terminal domain JDM601_3569 PF02769 AIR synthase related protein, C-terminal domain JDM601_3569 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JDM601_3570 PF02127 Aminopeptidase I zinc metalloprotease (M18) JDM601_3571 PF04261 Dyp-type peroxidase family JDM601_3572 PF04454 Encapsulating protein for peroxidase JDM601_3574 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase JDM601_3576 PF00890 FAD binding domain JDM601_3578 PF10011 Predicted membrane protein (DUF2254) JDM601_3579 PF00255 Glutathione peroxidase JDM601_3580 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JDM601_3580 PF00326 Prolyl oligopeptidase family JDM601_3581 PF01259 SAICAR synthetase JDM601_3587 PF00206 Lyase JDM601_3587 PF10397 Adenylosuccinate lyase C-terminus JDM601_3588 PF02233 NAD(P) transhydrogenase beta subunit JDM601_3589 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JDM601_3589 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JDM601_3589 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JDM601_3594 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JDM601_3594 PF02844 Phosphoribosylglycinamide synthetase, N domain JDM601_3594 PF02843 Phosphoribosylglycinamide synthetase, C domain JDM601_3596 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3598 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JDM601_3598 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JDM601_3600 PF00171 Aldehyde dehydrogenase family JDM601_3601 PF00440 Bacterial regulatory proteins, tetR family JDM601_3602 PF00067 Cytochrome P450 JDM601_3603 PF00106 short chain dehydrogenase JDM601_3604 PF00067 Cytochrome P450 JDM601_3609 PF00067 Cytochrome P450 JDM601_3610 PF00107 Zinc-binding dehydrogenase JDM601_3610 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_3612 PF01230 HIT domain JDM601_3613 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_3613 PF00672 HAMP domain JDM601_3613 PF00512 His Kinase A (phospho-acceptor) domain JDM601_3614 PF00072 Response regulator receiver domain JDM601_3614 PF00486 Transcriptional regulatory protein, C terminal JDM601_3616 PF00561 alpha/beta hydrolase fold JDM601_3617 PF00106 short chain dehydrogenase JDM601_3619 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3621 PF00982 Glycosyltransferase family 20 JDM601_3626 PF02470 MlaD protein JDM601_3631 PF02405 Permease MlaE JDM601_3635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3635 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3636 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3636 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3637 PF13577 SnoaL-like domain JDM601_3638 PF00501 AMP-binding enzyme JDM601_3638 PF13193 AMP-binding enzyme C-terminal domain JDM601_3642 PF00664 ABC transporter transmembrane region JDM601_3642 PF00005 ABC transporter JDM601_3646 PF00171 Aldehyde dehydrogenase family JDM601_3647 PF06974 Protein of unknown function (DUF1298) JDM601_3647 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JDM601_3648 PF13193 AMP-binding enzyme C-terminal domain JDM601_3648 PF00501 AMP-binding enzyme JDM601_3649 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3650 PF16363 GDP-mannose 4,6 dehydratase JDM601_3652 PF00067 Cytochrome P450 JDM601_3654 PF18645 Family of unknown function (DUF5631) JDM601_3654 PF18646 Family of unknown function (DUF5632) JDM601_3656 PF06259 Alpha/beta hydrolase JDM601_3658 PF00501 AMP-binding enzyme JDM601_3658 PF13193 AMP-binding enzyme C-terminal domain JDM601_3659 PF00296 Luciferase-like monooxygenase JDM601_3662 PF00814 Glycoprotease family JDM601_3663 PF00296 Luciferase-like monooxygenase JDM601_3667 PF00132 Bacterial transferase hexapeptide (six repeats) JDM601_3668 PF00355 Rieske [2Fe-2S] domain JDM601_3675 PF00296 Luciferase-like monooxygenase JDM601_3678 PF09382 RQC domain JDM601_3678 PF16124 RecQ zinc-binding JDM601_3678 PF00570 HRDC domain JDM601_3678 PF00271 Helicase conserved C-terminal domain JDM601_3678 PF00270 DEAD/DEAH box helicase JDM601_3679 PF00682 HMGL-like JDM601_3679 PF07836 DmpG-like communication domain JDM601_3680 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation JDM601_3680 PF01118 Semialdehyde dehydrogenase, NAD binding domain JDM601_3681 PF01557 Fumarylacetoacetate (FAA) hydrolase family JDM601_3682 PF00067 Cytochrome P450 JDM601_3683 PF00890 FAD binding domain JDM601_3685 PF00823 PPE family JDM601_3689 PF13452 N-terminal half of MaoC dehydratase JDM601_3690 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3691 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3691 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3692 PF00067 Cytochrome P450 JDM601_3693 PF00067 Cytochrome P450 JDM601_3694 PF00108 Thiolase, N-terminal domain JDM601_3694 PF02803 Thiolase, C-terminal domain JDM601_3696 PF04075 F420H(2)-dependent quinone reductase JDM601_3701 PF00196 Bacterial regulatory proteins, luxR family JDM601_3702 PF00106 short chain dehydrogenase JDM601_3704 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3705 PF01144 Coenzyme A transferase JDM601_3707 PF03060 Nitronate monooxygenase JDM601_3713 PF02803 Thiolase, C-terminal domain JDM601_3713 PF00108 Thiolase, N-terminal domain JDM601_3714 PF00440 Bacterial regulatory proteins, tetR family JDM601_3714 PF17932 Tetracyclin repressor-like, C-terminal domain JDM601_3716 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3716 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3716 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3717 PF00501 AMP-binding enzyme JDM601_3717 PF13193 AMP-binding enzyme C-terminal domain JDM601_3718 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3718 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3718 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3719 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3719 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3719 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3720 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3723 PF00155 Aminotransferase class I and II JDM601_3727 PF01370 NAD dependent epimerase/dehydratase family JDM601_3727 PF00391 PEP-utilising enzyme, mobile domain JDM601_3730 PF00106 short chain dehydrogenase JDM601_3731 PF00106 short chain dehydrogenase JDM601_3733 PF00171 Aldehyde dehydrogenase family JDM601_3734 PF00067 Cytochrome P450 JDM601_3736 PF05853 beta-keto acid cleavage enzyme JDM601_3741 PF01370 NAD dependent epimerase/dehydratase family JDM601_3741 PF00391 PEP-utilising enzyme, mobile domain JDM601_3745 PF00108 Thiolase, N-terminal domain JDM601_3745 PF02803 Thiolase, C-terminal domain JDM601_3750 PF00106 short chain dehydrogenase JDM601_3751 PF00501 AMP-binding enzyme JDM601_3751 PF13193 AMP-binding enzyme C-terminal domain JDM601_3752 PF02515 CoA-transferase family III JDM601_3753 PF00106 short chain dehydrogenase JDM601_3754 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3756 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3756 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3756 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3758 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JDM601_3758 PF02896 PEP-utilising enzyme, TIM barrel domain JDM601_3758 PF00391 PEP-utilising enzyme, mobile domain JDM601_3759 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3759 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3759 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3761 PF01039 Carboxyl transferase domain JDM601_3762 PF02785 Biotin carboxylase C-terminal domain JDM601_3762 PF00364 Biotin-requiring enzyme JDM601_3762 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JDM601_3762 PF00289 Biotin carboxylase, N-terminal domain JDM601_3764 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3764 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3764 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3767 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3767 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3767 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3769 PF13683 Integrase core domain JDM601_3769 PF13276 HTH-like domain JDM601_3770 PF01527 Transposase JDM601_3772 PF00872 Transposase, Mutator family JDM601_3773 PF01370 NAD dependent epimerase/dehydratase family JDM601_3773 PF00391 PEP-utilising enzyme, mobile domain JDM601_3777 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3777 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3777 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3778 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3778 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3778 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3780 PF00501 AMP-binding enzyme JDM601_3780 PF13193 AMP-binding enzyme C-terminal domain JDM601_3784 PF13193 AMP-binding enzyme C-terminal domain JDM601_3784 PF00501 AMP-binding enzyme JDM601_3786 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3796 PF02405 Permease MlaE JDM601_3804 PF00067 Cytochrome P450 JDM601_3806 PF00171 Aldehyde dehydrogenase family JDM601_3807 PF00391 PEP-utilising enzyme, mobile domain JDM601_3807 PF01370 NAD dependent epimerase/dehydratase family JDM601_3810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3810 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3811 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3811 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3811 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3812 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3814 PF13193 AMP-binding enzyme C-terminal domain JDM601_3814 PF00501 AMP-binding enzyme JDM601_3815 PF00391 PEP-utilising enzyme, mobile domain JDM601_3815 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JDM601_3815 PF02896 PEP-utilising enzyme, TIM barrel domain JDM601_3819 PF00106 short chain dehydrogenase JDM601_3822 PF00171 Aldehyde dehydrogenase family JDM601_3829 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3829 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3829 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3832 PF00391 PEP-utilising enzyme, mobile domain JDM601_3832 PF01370 NAD dependent epimerase/dehydratase family JDM601_3837 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3838 PF00391 PEP-utilising enzyme, mobile domain JDM601_3838 PF01370 NAD dependent epimerase/dehydratase family JDM601_3839 PF13193 AMP-binding enzyme C-terminal domain JDM601_3839 PF00501 AMP-binding enzyme JDM601_3840 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3841 PF00561 alpha/beta hydrolase fold JDM601_3842 PF02803 Thiolase, C-terminal domain JDM601_3842 PF00108 Thiolase, N-terminal domain JDM601_3843 PF02515 CoA-transferase family III JDM601_3844 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3844 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3844 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3845 PF00378 Enoyl-CoA hydratase/isomerase JDM601_3846 PF03060 Nitronate monooxygenase JDM601_3852 PF01613 Flavin reductase like domain JDM601_3853 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JDM601_3854 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3855 PF00970 Oxidoreductase FAD-binding domain JDM601_3855 PF00111 2Fe-2S iron-sulfur cluster binding domain JDM601_3855 PF00175 Oxidoreductase NAD-binding domain JDM601_3856 PF11941 Domain of unknown function (DUF3459) JDM601_3856 PF00128 Alpha amylase, catalytic domain JDM601_3858 PF00128 Alpha amylase, catalytic domain JDM601_3859 PF00128 Alpha amylase, catalytic domain JDM601_3859 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JDM601_3860 PF02446 4-alpha-glucanotransferase JDM601_3861 PF00128 Alpha amylase, catalytic domain JDM601_3861 PF16657 Maltogenic Amylase, C-terminal domain JDM601_3862 PF18085 Maltokinase N-terminal cap domain JDM601_3863 PF02806 Alpha amylase, C-terminal all-beta domain JDM601_3863 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JDM601_3863 PF00128 Alpha amylase, catalytic domain JDM601_3864 PF11896 Domain of unknown function (DUF3416) JDM601_3864 PF00128 Alpha amylase, catalytic domain JDM601_3865 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_3865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_3865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_3866 PF00440 Bacterial regulatory proteins, tetR family JDM601_3866 PF17925 Tetracyclin repressor-like, C-terminal domain JDM601_3869 PF02040 Arsenical pump membrane protein JDM601_3870 PF00588 SpoU rRNA Methylase family JDM601_3870 PF08032 RNA 2'-O ribose methyltransferase substrate binding JDM601_3871 PF01406 tRNA synthetases class I (C) catalytic domain JDM601_3871 PF09190 DALR domain JDM601_3873 PF02542 YgbB family JDM601_3874 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JDM601_3875 PF02559 CarD-like/TRCF domain JDM601_3878 PF18073 Rubredoxin metal binding domain JDM601_3880 PF00484 Carbonic anhydrase JDM601_3882 PF00633 Helix-hairpin-helix motif JDM601_3882 PF00730 HhH-GPD superfamily base excision DNA repair protein JDM601_3883 PF03992 Antibiotic biosynthesis monooxygenase JDM601_3885 PF10431 C-terminal, D2-small domain, of ClpB protein JDM601_3885 PF17871 AAA lid domain JDM601_3885 PF02861 Clp amino terminal domain, pathogenicity island component JDM601_3885 PF00004 ATPase family associated with various cellular activities (AAA) JDM601_3885 PF07724 AAA domain (Cdc48 subfamily) JDM601_3887 PF11774 Lsr2 JDM601_3888 PF00152 tRNA synthetases class II (D, K and N) JDM601_3888 PF01336 OB-fold nucleic acid binding domain JDM601_3889 PF03309 Type III pantothenate kinase JDM601_3890 PF02261 Aspartate decarboxylase JDM601_3891 PF02569 Pantoate-beta-alanine ligase JDM601_3895 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JDM601_3896 PF02152 Dihydroneopterin aldolase JDM601_3897 PF00809 Pterin binding enzyme JDM601_3898 PF01227 GTP cyclohydrolase I JDM601_3899 PF00004 ATPase family associated with various cellular activities (AAA) JDM601_3899 PF17862 AAA+ lid domain JDM601_3899 PF01434 Peptidase family M41 JDM601_3900 PF00561 alpha/beta hydrolase fold JDM601_3901 PF00296 Luciferase-like monooxygenase JDM601_3902 PF00107 Zinc-binding dehydrogenase JDM601_3902 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_3905 PF00872 Transposase, Mutator family JDM601_3907 PF01171 PP-loop family JDM601_3907 PF09179 TilS substrate binding domain JDM601_3909 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JDM601_3911 PF00719 Inorganic pyrophosphatase JDM601_3912 PF00440 Bacterial regulatory proteins, tetR family JDM601_3912 PF13305 Tetracyclin repressor-like, C-terminal domain JDM601_3913 PF03741 Integral membrane protein TerC family JDM601_3919 PF00689 Cation transporting ATPase, C-terminus JDM601_3920 PF16363 GDP-mannose 4,6 dehydratase JDM601_3922 PF00550 Phosphopantetheine attachment site JDM601_3922 PF00501 AMP-binding enzyme JDM601_3922 PF00668 Condensation domain JDM601_3922 PF00975 Thioesterase domain JDM601_3922 PF13193 AMP-binding enzyme C-terminal domain JDM601_3923 PF11838 ERAP1-like C-terminal domain JDM601_3923 PF01433 Peptidase family M1 domain JDM601_3924 PF00823 PPE family JDM601_3924 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_3926 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_3926 PF00823 PPE family JDM601_3927 PF00486 Transcriptional regulatory protein, C terminal JDM601_3927 PF00072 Response regulator receiver domain JDM601_3928 PF00672 HAMP domain JDM601_3928 PF00512 His Kinase A (phospho-acceptor) domain JDM601_3928 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_3929 PF12169 DNA polymerase III subunits gamma and tau domain III JDM601_3930 PF00672 HAMP domain JDM601_3930 PF00211 Adenylate and Guanylate cyclase catalytic domain JDM601_3931 PF01131 DNA topoisomerase JDM601_3931 PF01751 Toprim domain JDM601_3931 PF13368 Topoisomerase C-terminal repeat JDM601_3933 PF00313 'Cold-shock' DNA-binding domain JDM601_3934 PF00270 DEAD/DEAH box helicase JDM601_3934 PF09369 Domain of unknown function (DUF1998) JDM601_3934 PF00271 Helicase conserved C-terminal domain JDM601_3941 PF00437 Type II/IV secretion system protein JDM601_3945 PF00501 AMP-binding enzyme JDM601_3945 PF13193 AMP-binding enzyme C-terminal domain JDM601_3945 PF16177 Acetyl-coenzyme A synthetase N-terminus JDM601_3949 PF02674 Colicin V production protein JDM601_3950 PF00293 NUDIX domain JDM601_3951 PF00578 AhpC/TSA family JDM601_3952 PF00730 HhH-GPD superfamily base excision DNA repair protein JDM601_3952 PF10576 Iron-sulfur binding domain of endonuclease III JDM601_3952 PF00633 Helix-hairpin-helix motif JDM601_3954 PF13545 Crp-like helix-turn-helix domain JDM601_3954 PF00027 Cyclic nucleotide-binding domain JDM601_3958 PF02374 Anion-transporting ATPase JDM601_3959 PF02374 Anion-transporting ATPase JDM601_3960 PF02467 Transcription factor WhiB JDM601_3961 PF00905 Penicillin binding protein transpeptidase domain JDM601_3961 PF00912 Transglycosylase JDM601_3962 PF00149 Calcineurin-like phosphoesterase JDM601_3963 PF00291 Pyridoxal-phosphate dependent enzyme JDM601_3965 PF00723 Glycosyl hydrolases family 15 JDM601_3970 PF14258 Domain of unknown function (DUF4350) JDM601_3971 PF07726 ATPase family associated with various cellular activities (AAA) JDM601_3971 PF17863 AAA lid domain JDM601_3972 PF01882 Protein of unknown function DUF58 JDM601_3975 PF03551 Transcriptional regulator PadR-like family JDM601_3977 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JDM601_3977 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JDM601_3980 PF00266 Aminotransferase class-V JDM601_3981 PF10017 Histidine-specific methyltransferase, SAM-dependent JDM601_3983 PF12867 DinB superfamily JDM601_3983 PF03781 Sulfatase-modifying factor enzyme 1 JDM601_3984 PF04107 Glutamate-cysteine ligase family 2(GCS2) JDM601_3986 PF02566 OsmC-like protein JDM601_3987 PF06628 Catalase-related immune-responsive JDM601_3987 PF00199 Catalase JDM601_3989 PF13810 Domain of unknown function (DUF4185) JDM601_3990 PF02774 Semialdehyde dehydrogenase, dimerisation domain JDM601_3990 PF01118 Semialdehyde dehydrogenase, NAD binding domain JDM601_3991 PF01842 ACT domain JDM601_3991 PF00696 Amino acid kinase family JDM601_3991 PF13840 ACT domain JDM601_3993 PF08502 LeuA allosteric (dimerisation) domain JDM601_3993 PF00682 HMGL-like JDM601_3994 PF14579 Helix-hairpin-helix motif JDM601_3994 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JDM601_3994 PF02811 PHP domain JDM601_3994 PF07733 Bacterial DNA polymerase III alpha NTPase domain JDM601_3994 PF00929 Exonuclease JDM601_3994 PF14480 DNA polymerase III polC-type N-terminus I JDM601_3994 PF11490 DNA polymerase III polC-type N-terminus II JDM601_3995 PF08353 Domain of unknown function (DUF1727) JDM601_3995 PF08245 Mur ligase middle domain JDM601_3997 PF05651 Putative sugar diacid recognition JDM601_3997 PF17853 GGDEF-like domain JDM601_3997 PF13556 PucR C-terminal helix-turn-helix domain JDM601_3998 PF00487 Fatty acid desaturase JDM601_3999 PF00301 Rubredoxin JDM601_4000 PF00301 Rubredoxin JDM601_4002 PF14759 Reductase C-terminal JDM601_4002 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_4003 PF13662 Toprim domain JDM601_4003 PF02132 RecR protein JDM601_4004 PF02575 YbaB/EbfC DNA-binding family JDM601_4005 PF01520 N-acetylmuramoyl-L-alanine amidase JDM601_4008 PF01494 FAD binding domain JDM601_4010 PF12169 DNA polymerase III subunits gamma and tau domain III JDM601_4012 PF12897 Alanine-glyoxylate amino-transferase JDM601_4014 PF10774 Domain of unknown function (DUF4226) JDM601_4017 PF03176 MMPL family JDM601_4018 PF05423 Mycobacterium membrane protein JDM601_4020 PF03965 Penicillinase repressor JDM601_4022 PF01068 ATP dependent DNA ligase domain JDM601_4022 PF13298 DNA polymerase Ligase (LigD) JDM601_4022 PF04679 ATP dependent DNA ligase C terminal region JDM601_4023 PF04679 ATP dependent DNA ligase C terminal region JDM601_4023 PF01068 ATP dependent DNA ligase domain JDM601_4024 PF00561 alpha/beta hydrolase fold JDM601_4028 PF00501 AMP-binding enzyme JDM601_4029 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JDM601_4029 PF06974 Protein of unknown function (DUF1298) JDM601_4030 PF01520 N-acetylmuramoyl-L-alanine amidase JDM601_4033 PF14437 MafB19-like deaminase JDM601_4036 PF02153 Prephenate dehydrogenase JDM601_4037 PF06305 Lipopolysaccharide assembly protein A domain JDM601_4041 PF00672 HAMP domain JDM601_4041 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDM601_4041 PF00512 His Kinase A (phospho-acceptor) domain JDM601_4042 PF00072 Response regulator receiver domain JDM601_4042 PF00486 Transcriptional regulatory protein, C terminal JDM601_4050 PF00155 Aminotransferase class I and II JDM601_4054 PF03741 Integral membrane protein TerC family JDM601_4055 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain JDM601_4056 PF00378 Enoyl-CoA hydratase/isomerase JDM601_4057 PF00893 Small Multidrug Resistance protein JDM601_4060 PF00561 alpha/beta hydrolase fold JDM601_4061 PF03466 LysR substrate binding domain JDM601_4061 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JDM601_4068 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_4068 PF16197 Ketoacyl-synthetase C-terminal extension JDM601_4068 PF00698 Acyl transferase domain JDM601_4068 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_4068 PF08659 KR domain JDM601_4068 PF00550 Phosphopantetheine attachment site JDM601_4068 PF14765 Polyketide synthase dehydratase JDM601_4068 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_4077 PF00501 AMP-binding enzyme JDM601_4078 PF00266 Aminotransferase class-V JDM601_4080 PF10759 Protein of unknown function (DUF2587) JDM601_4081 PF00005 ABC transporter JDM601_4083 PF01061 ABC-2 type transporter JDM601_4084 PF01402 Ribbon-helix-helix protein, copG family JDM601_4085 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JDM601_4086 PF13378 Enolase C-terminal domain-like JDM601_4086 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JDM601_4087 PF04138 GtrA-like protein JDM601_4089 PF01850 PIN domain JDM601_4095 PF09957 Bacterial antitoxin of type II TA system, VapB JDM601_4096 PF01850 PIN domain JDM601_4098 PF04030 D-arabinono-1,4-lactone oxidase JDM601_4098 PF01565 FAD binding domain JDM601_4099 PF00106 short chain dehydrogenase JDM601_4101 PF12250 Arabinofuranosyltransferase N terminal JDM601_4101 PF12249 Arabinofuranosyltransferase A C terminal JDM601_4102 PF14896 EmbC C-terminal domain JDM601_4102 PF17689 Arabinosyltransferase concanavalin like domain JDM601_4102 PF04602 Mycobacterial cell wall arabinan synthesis protein JDM601_4104 PF04602 Mycobacterial cell wall arabinan synthesis protein JDM601_4104 PF17689 Arabinosyltransferase concanavalin like domain JDM601_4104 PF14896 EmbC C-terminal domain JDM601_4105 PF04602 Mycobacterial cell wall arabinan synthesis protein JDM601_4105 PF17689 Arabinosyltransferase concanavalin like domain JDM601_4105 PF14896 EmbC C-terminal domain JDM601_4107 PF00510 Cytochrome c oxidase subunit III JDM601_4110 PF00083 Sugar (and other) transporter JDM601_4112 PF08237 PE-PPE domain JDM601_4112 PF00823 PPE family JDM601_4114 PF06965 Na+/H+ antiporter 1 JDM601_4115 PF06965 Na+/H+ antiporter 1 JDM601_4116 PF01039 Carboxyl transferase domain JDM601_4117 PF16197 Ketoacyl-synthetase C-terminal extension JDM601_4117 PF02801 Beta-ketoacyl synthase, C-terminal domain JDM601_4117 PF00698 Acyl transferase domain JDM601_4117 PF08659 KR domain JDM601_4117 PF00550 Phosphopantetheine attachment site JDM601_4117 PF00109 Beta-ketoacyl synthase, N-terminal domain JDM601_4117 PF14765 Polyketide synthase dehydratase JDM601_4118 PF00501 AMP-binding enzyme JDM601_4121 PF00756 Putative esterase JDM601_4122 PF00756 Putative esterase JDM601_4124 PF01040 UbiA prenyltransferase family JDM601_4125 PF01569 PAP2 superfamily JDM601_4126 PF17994 Galactofuranosyltransferase 2 N-terminal JDM601_4127 PF03275 UDP-galactopyranose mutase JDM601_4134 PF00355 Rieske [2Fe-2S] domain JDM601_4139 PF08361 MAATS-type transcriptional repressor, C-terminal region JDM601_4139 PF00440 Bacterial regulatory proteins, tetR family JDM601_4140 PF03176 MMPL family JDM601_4141 PF05423 Mycobacterium membrane protein JDM601_4142 PF08361 MAATS-type transcriptional repressor, C-terminal region JDM601_4142 PF00440 Bacterial regulatory proteins, tetR family JDM601_4143 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JDM601_4143 PF02403 Seryl-tRNA synthetase N-terminal domain JDM601_4144 PF13845 Septum formation JDM601_4148 PF00800 Prephenate dehydratase JDM601_4148 PF01842 ACT domain JDM601_4153 PF03816 Cell envelope-related transcriptional attenuator domain JDM601_4154 PF00210 Ferritin-like domain JDM601_4155 PF03009 Glycerophosphoryl diester phosphodiesterase family JDM601_4158 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JDM601_4158 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JDM601_4160 PF01169 Uncharacterized protein family UPF0016 JDM601_4166 PF03737 Aldolase/RraA JDM601_4167 PF01168 Alanine racemase, N-terminal domain JDM601_4168 PF00743 Flavin-binding monooxygenase-like JDM601_4171 PF00743 Flavin-binding monooxygenase-like JDM601_4172 PF00440 Bacterial regulatory proteins, tetR family JDM601_4175 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_4175 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JDM601_4176 PF01493 GXGXG motif JDM601_4176 PF01645 Conserved region in glutamate synthase JDM601_4176 PF04898 Glutamate synthase central domain JDM601_4176 PF00310 Glutamine amidotransferases class-II JDM601_4178 PF00120 Glutamine synthetase, catalytic domain JDM601_4178 PF03951 Glutamine synthetase, beta-Grasp domain JDM601_4180 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JDM601_4181 PF02515 CoA-transferase family III JDM601_4182 PF00756 Putative esterase JDM601_4184 PF13180 PDZ domain JDM601_4185 PF00679 Elongation factor G C-terminus JDM601_4185 PF14492 Elongation Factor G, domain II JDM601_4185 PF03144 Elongation factor Tu domain 2 JDM601_4185 PF00009 Elongation factor Tu GTP binding domain JDM601_4185 PF03764 Elongation factor G, domain IV JDM601_4187 PF03734 L,D-transpeptidase catalytic domain JDM601_4187 PF17964 Bacterial Ig domain JDM601_4189 PF00550 Phosphopantetheine attachment site JDM601_4189 PF07993 Male sterility protein JDM601_4189 PF00501 AMP-binding enzyme JDM601_4190 PF01757 Acyltransferase family JDM601_4192 PF01209 ubiE/COQ5 methyltransferase family JDM601_4195 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_4195 PF00823 PPE family JDM601_4196 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_4196 PF00823 PPE family JDM601_4201 PF00171 Aldehyde dehydrogenase family JDM601_4203 PF00106 short chain dehydrogenase JDM601_4205 PF00067 Cytochrome P450 JDM601_4206 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH JDM601_4207 PF10604 Polyketide cyclase / dehydrase and lipid transport JDM601_4208 PF07969 Amidohydrolase family JDM601_4210 PF06441 Epoxide hydrolase N terminus JDM601_4211 PF02720 Domain of unknown function (DUF222) JDM601_4211 PF01844 HNH endonuclease JDM601_4212 PF00355 Rieske [2Fe-2S] domain JDM601_4212 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JDM601_4213 PF03176 MMPL family JDM601_4214 PF05423 Mycobacterium membrane protein JDM601_4216 PF00440 Bacterial regulatory proteins, tetR family JDM601_4217 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JDM601_4221 PF06314 Acetoacetate decarboxylase (ADC) JDM601_4227 PF13452 N-terminal half of MaoC dehydratase JDM601_4231 PF00296 Luciferase-like monooxygenase JDM601_4232 PF00106 short chain dehydrogenase JDM601_4234 PF00934 PE family JDM601_4235 PF00823 PPE family JDM601_4235 PF12484 Polymorphic PE/PPE proteins C terminal JDM601_4237 PF08924 Domain of unknown function (DUF1906) JDM601_4238 PF00296 Luciferase-like monooxygenase JDM601_4240 PF00171 Aldehyde dehydrogenase family JDM601_4242 PF02551 Acyl-CoA thioesterase JDM601_4244 PF00440 Bacterial regulatory proteins, tetR family JDM601_4244 PF17925 Tetracyclin repressor-like, C-terminal domain JDM601_4245 PF00106 short chain dehydrogenase JDM601_4246 PF00106 short chain dehydrogenase JDM601_4248 PF00175 Oxidoreductase NAD-binding domain JDM601_4248 PF00111 2Fe-2S iron-sulfur cluster binding domain JDM601_4248 PF00970 Oxidoreductase FAD-binding domain JDM601_4249 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JDM601_4250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JDM601_4253 PF07859 alpha/beta hydrolase fold JDM601_4254 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_4254 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JDM601_4258 PF00890 FAD binding domain JDM601_4258 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) JDM601_4259 PF00501 AMP-binding enzyme JDM601_4259 PF13193 AMP-binding enzyme C-terminal domain JDM601_4260 PF00107 Zinc-binding dehydrogenase JDM601_4260 PF08240 Alcohol dehydrogenase GroES-like domain JDM601_4261 PF00171 Aldehyde dehydrogenase family JDM601_4262 PF00378 Enoyl-CoA hydratase/isomerase JDM601_4263 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JDM601_4263 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JDM601_4263 PF02770 Acyl-CoA dehydrogenase, middle domain JDM601_4267 PF07859 alpha/beta hydrolase fold JDM601_4270 PF00355 Rieske [2Fe-2S] domain JDM601_4271 PF00890 FAD binding domain JDM601_4273 PF01613 Flavin reductase like domain JDM601_4274 PF00890 FAD binding domain JDM601_4281 PF02470 MlaD protein JDM601_4286 PF02405 Permease MlaE JDM601_4287 PF02405 Permease MlaE JDM601_4292 PF08924 Domain of unknown function (DUF1906) JDM601_4293 PF00753 Metallo-beta-lactamase superfamily JDM601_4293 PF16123 Hydroxyacylglutathione hydrolase C-terminus JDM601_4294 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JDM601_4294 PF01676 Metalloenzyme superfamily JDM601_4300 PF00144 Beta-lactamase JDM601_4301 PF07683 Cobalamin synthesis protein cobW C-terminal domain JDM601_4301 PF02492 CobW/HypB/UreG, nucleotide-binding domain JDM601_4304 PF03796 DnaB-like helicase C terminal domain JDM601_4304 PF14528 LAGLIDADG-like domain JDM601_4304 PF03796 DnaB-like helicase C terminal domain JDM601_4304 PF00772 DnaB-like helicase N terminal domain JDM601_4304 PF00772 DnaB-like helicase N terminal domain JDM601_4304 PF14528 LAGLIDADG-like domain JDM601_4305 PF01281 Ribosomal protein L9, N-terminal domain JDM601_4305 PF03948 Ribosomal protein L9, C-terminal domain JDM601_4306 PF01084 Ribosomal protein S18 JDM601_4307 PF00436 Single-strand binding protein family JDM601_4308 PF01250 Ribosomal protein S6 JDM601_4310 PF00905 Penicillin binding protein transpeptidase domain JDM601_4310 PF00912 Transglycosylase JDM601_4311 PF00912 Transglycosylase JDM601_4311 PF00905 Penicillin binding protein transpeptidase domain JDM601_4312 PF17249 Family of unknown function (DUF5318) JDM601_4313 PF08044 Domain of unknown function (DUF1707) JDM601_4315 PF01658 Myo-inositol-1-phosphate synthase JDM601_4316 PF12697 Alpha/beta hydrolase family JDM601_4317 PF00296 Luciferase-like monooxygenase JDM601_4318 PF00528 Binding-protein-dependent transport system inner membrane component JDM601_4319 PF00005 ABC transporter JDM601_4321 PF00106 short chain dehydrogenase JDM601_4322 PF08264 Anticodon-binding domain of tRNA JDM601_4322 PF13603 Leucyl-tRNA synthetase, Domain 2 JDM601_4322 PF09334 tRNA synthetases class I (M) JDM601_4324 PF10738 Probable lipoprotein LpqN JDM601_4326 PF02622 Uncharacterized ACR, COG1678 JDM601_4327 PF07690 Major Facilitator Superfamily JDM601_4328 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain JDM601_4328 PF08608 Wyosine base formation JDM601_4331 PF01743 Poly A polymerase head domain JDM601_4331 PF13735 tRNA nucleotidyltransferase domain 2 putative JDM601_4331 PF12627 Probable RNA and SrmB- binding site of polymerase A JDM601_4332 PF00293 NUDIX domain JDM601_4334 PF03023 Lipid II flippase MurJ JDM601_4335 PF08281 Sigma-70, region 4 JDM601_4335 PF04542 Sigma-70 region 2 JDM601_4337 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDM601_4338 PF00085 Thioredoxin JDM601_4340 PF01471 Putative peptidoglycan binding domain JDM601_4340 PF01520 N-acetylmuramoyl-L-alanine amidase JDM601_4341 PF02195 ParB-like nuclease domain JDM601_4341 PF17762 HTH domain found in ParB protein JDM601_4342 PF13614 AAA domain JDM601_4344 PF02096 60Kd inner membrane protein JDM601_4345 PF00825 Ribonuclease P JDM601_4346 PF00468 Ribosomal protein L34 JDM601_tRNA19 PF05697 Bacterial trigger factor protein (TF) JDM601_tRNA19 PF05698 Bacterial trigger factor protein (TF) C-terminus