locus-tag	class	description
JPM2_0010	COG0592	DNA-directed DNA polymerase activity
JPM2_0070	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JPM2_0100	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JPM2_0200	COG0564	pseudouridine synthase activity
JPM2_0300	COG0563	adenylate kinase activity
JPM2_0320	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JPM2_0330	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JPM2_0340	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JPM2_0360	COG0202	RNA polymerase activity
JPM2_0560	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JPM2_0590	COG1739	Uncharacterized protein family UPF0029
JPM2_0640	COG0594	ribonuclease P activity
JPM2_0770	COG0813	purine-nucleoside phosphorylase activity
JPM2_1180	COG1307	EDD domain protein, DegV family
JPM2_1220	COG1428	Deoxynucleoside kinase
JPM2_1280	COG0579	oxidoreductase
JPM2_1550	COG0194	GDP metabolic process
JPM2_1600	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JPM2_1650	COG0261	This protein binds to 23S rRNA in the presence of protein L20
JPM2_1660	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JPM2_1740	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
JPM2_1790	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JPM2_1800	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JPM2_2120	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JPM2_2170	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JPM2_2190	COG3763	UPF0154 protein
JPM2_2230	COG0275	rRNA processing
JPM2_2340	COG1263	PTS System
JPM2_2340	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JPM2_2340	COG2190	(PTS) system
JPM2_2640	COG0742	ribosomal rna small subunit methyltransferase
JPM2_2740	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
JPM2_2750	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JPM2_3070	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JPM2_3080	COG0295	cytidine deaminase activity
JPM2_3280	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
JPM2_3420	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
JPM2_3540	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JPM2_3550	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JPM2_3590	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JPM2_3760	COG0222	ribosome binding
JPM2_3770	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JPM2_3870	COG0556	nucleotide-excision repair
JPM2_4120	COG2255	four-way junction helicase activity
JPM2_4140	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JPM2_4470	COG1187	pseudouridine synthase activity
JPM2_4480	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JPM2_4520	COG0698	ribose 5-phosphate isomerase
JPM2_4630	COG0254	rRNA binding
JPM2_4740	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
JPM2_4750	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JPM2_4790	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JPM2_4820	COG0255	Belongs to the universal ribosomal protein uL29 family
JPM2_4850	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JPM2_4900	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JPM2_4910	COG0051	transcription antitermination factor activity, RNA binding
JPM2_5070	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
JPM2_5160	COG3842	ATPase activity
JPM2_5290	COG0335	large ribosomal subunit rRNA binding
JPM2_5410	COG0217	transcriptional regulatory protein
JPM2_5470	COG0301	tRNA thio-modification
JPM2_5550	COG1122	ATPase activity
JPM2_5700	COG0268	Binds directly to 16S ribosomal RNA
JPM2_5750	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
JPM2_5780	COG0484	heat shock protein binding
JPM2_5800	COG0180	Tryptophanyl-tRNA synthetase
JPM2_6160	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JPM2_6400	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JPM2_6400	COG0072	phenylalanine-tRNA ligase activity
JPM2_6440	COG0081	regulation of translation
JPM2_6450	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JPM2_6500	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JPM2_6630	COG0233	cytoplasmic translational termination
JPM2_6890	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JPM2_6900	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JPM2_6990	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JPM2_7330	COG0193	aminoacyl-tRNA hydrolase activity