A6J44_00010	SM00530	Helix-turn-helix XRE-family like proteins 
A6J44_00040	SM00470	ParB-like nuclease domain
A6J44_00095	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A6J44_00095	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A6J44_00095	SM00493	A6J44_00095
A6J44_00105	SM00493	A6J44_00105
A6J44_00170	SM00857	Resolvase, N terminal domain
A6J44_00220	SM00382	ATPases associated with a variety of cellular activities
A6J44_00235	SM00857	Resolvase, N terminal domain
A6J44_00330	SM01230	A6J44_00330
A6J44_00360	SM00382	ATPases associated with a variety of cellular activities
A6J44_00380	SM00116	Domain in cystathionine beta-synthase and other proteins.
A6J44_00500	SM00530	Helix-turn-helix XRE-family like proteins 
A6J44_00640	SM00062	Bacterial periplasmic substrate-binding proteins
A6J44_00640	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A6J44_00680	SM01126	A6J44_00680
A6J44_00800	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A6J44_00845	SM01126	A6J44_00845
A6J44_00850	SM00938	Nitrogen regulatory protein P-II
A6J44_00855	SM01211	A6J44_00855
A6J44_00865	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A6J44_00870	SM00849	Metallo-beta-lactamase superfamily
A6J44_00875	SM00116	Domain in cystathionine beta-synthase and other proteins.
A6J44_00875	SM00924	MgtE intracellular N domain
A6J44_00925	SM00382	ATPases associated with a variety of cellular activities
A6J44_00925	SM00487	DEAD-like helicases superfamily
A6J44_00925	SM00490	helicase superfamily c-terminal domain
A6J44_00940	SM00847	Helicase associated domain (HA2)  Add an annotation
A6J44_01010	SM01040	BRO family, N-terminal domain
A6J44_01125	SM00382	ATPases associated with a variety of cellular activities
A6J44_01245	SM01118	A6J44_01245
A6J44_01280	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A6J44_01325	SM00382	ATPases associated with a variety of cellular activities
A6J44_01325	SM00962	SRP54-type protein, GTPase domain
A6J44_01325	SM00963	SRP54-type protein, helical bundle domain
A6J44_01365	SM00491	A6J44_01365
A6J44_01395	SM00955	A6J44_01395
A6J44_01440	SM00341	Helicase and RNase D C-terminal
A6J44_01440	SM00487	DEAD-like helicases superfamily
A6J44_01440	SM00490	helicase superfamily c-terminal domain
A6J44_01440	SM00956	A6J44_01440
A6J44_01480	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A6J44_01490	SM00382	ATPases associated with a variety of cellular activities
A6J44_01555	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A6J44_01565	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
A6J44_01610	SM01126	A6J44_01610
A6J44_01725	SM00382	ATPases associated with a variety of cellular activities
A6J44_01725	SM00962	SRP54-type protein, GTPase domain
A6J44_01725	SM00963	SRP54-type protein, helical bundle domain
A6J44_01785	SM00925	MltA specific insert domain
A6J44_01880	SM00382	ATPases associated with a variety of cellular activities
A6J44_01910	SM00849	Metallo-beta-lactamase superfamily
A6J44_02020	SM00062	Bacterial periplasmic substrate-binding proteins
A6J44_02025	SM00382	ATPases associated with a variety of cellular activities
A6J44_02135	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A6J44_02155	SM00840	A6J44_02155
A6J44_02345	SM00852	Probable molybdopterin binding domain
A6J44_02415	SM00937	A6J44_02415
A6J44_02475	SM01209	A6J44_02475
A6J44_02475	SM01210	A6J44_02475
A6J44_02490	SM00893	Electron transfer flavoprotein domain
A6J44_02495	SM00893	Electron transfer flavoprotein domain
A6J44_02515	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A6J44_02520	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A6J44_02520	SM00534	ATPase domain of DNA mismatch repair MUTS family
A6J44_02565	SM00382	ATPases associated with a variety of cellular activities
A6J44_02610	SM01350	A6J44_02610
A6J44_02635	SM00465	GIY-YIG type nucleases (URI domain)
A6J44_02650	SM00382	ATPases associated with a variety of cellular activities
A6J44_02655	SM00382	ATPases associated with a variety of cellular activities
A6J44_02715	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A6J44_02730	SM00271	DnaJ molecular chaperone homology domain
A6J44_02760	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J44_02760	SM00732	Likely ribonuclease with RNase H fold.
A6J44_02855	SM00382	ATPases associated with a variety of cellular activities
A6J44_02905	SM00257	Lysin motif
A6J44_02935	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A6J44_02935	SM00387	Histidine kinase-like ATPases
A6J44_02935	SM00388	His Kinase A (phosphoacceptor) domain
A6J44_02940	SM00448	cheY-homologous receiver domain
A6J44_02955	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A6J44_02955	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A6J44_02955	SM00493	A6J44_02955
A6J44_03020	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A6J44_03020	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A6J44_03025	SM00649	Ribosomal protein L11/L12
A6J44_03050	SM00663	RNA polymerase I subunit A N-terminus
A6J44_03090	SM00838	Elongation factor G C-terminus
A6J44_03090	SM00889	Elongation factor G, domain IV
A6J44_03100	SM01403	A6J44_03100
A6J44_03130	SM01382	A6J44_03130
A6J44_03130	SM01383	A6J44_03130
A6J44_03145	SM00322	K homology RNA-binding domain
A6J44_03165	SM01374	A6J44_03165
A6J44_03170	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A6J44_03240	SM00363	S4 RNA-binding domain
A6J44_03240	SM01390	A6J44_03240
A6J44_03245	SM00662	RNA polymerases D
A6J44_03350	SM00935	Outer membrane protein (OmpH-like)
A6J44_03360	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A6J44_03440	SM01228	A6J44_03440
A6J44_03455	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J44_03465	SM00363	S4 RNA-binding domain
A6J44_03505	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A6J44_03560	SM00387	Histidine kinase-like ATPases
A6J44_03560	SM00433	TopoisomeraseII
A6J44_03595	SM01060	A6J44_03595
A6J44_03625	SM00825	Beta-ketoacyl synthase
A6J44_03685	SM00563	Phosphate acyltransferases
A6J44_03745	SM00947	Carbonic anhydrase
A6J44_03790	SM00382	ATPases associated with a variety of cellular activities
A6J44_03830	SM00883	Chaperonin 10 Kd subunit
A6J44_03875	SM01219	A6J44_03875
A6J44_03890	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A6J44_03890	SM00474	3'-5' exonuclease
A6J44_03890	SM00475	5'-3' exonuclease
A6J44_03890	SM00482	DNA polymerase A domain
A6J44_03905	SM00869	Autotransporter beta-domain
A6J44_03980	SM00382	ATPases associated with a variety of cellular activities
A6J44_04085	SM00382	ATPases associated with a variety of cellular activities
A6J44_04110	SM00470	ParB-like nuclease domain
A6J44_04160	SM00382	ATPases associated with a variety of cellular activities
A6J44_04250	SM00822	A6J44_04250
A6J44_04260	SM00382	ATPases associated with a variety of cellular activities
A6J44_04265	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A6J44_04340	SM01234	A6J44_04340
A6J44_04360	SM00382	ATPases associated with a variety of cellular activities
A6J44_04360	SM00760	Bacterial dnaA protein helix-turn-helix domain
A6J44_04365	SM00480	DNA polymerase III beta subunit
A6J44_04430	SM00530	Helix-turn-helix XRE-family like proteins 
A6J44_04465	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A6J44_04475	SM00450	Rhodanese Homology Domain
A6J44_04495	SM00342	helix_turn_helix, arabinose operon control protein
A6J44_04550	SM00861	Transketolase, pyrimidine binding domain
A6J44_04555	SM00729	Elongator protein 3, MiaB family, Radical SAM
A6J44_04580	SM00479	A6J44_04580
A6J44_04590	SM00878	Biotin carboxylase C-terminal domain
A6J44_04610	SM00851	MGS-like domain
A6J44_04610	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A6J44_04645	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A6J44_04660	SM00465	GIY-YIG type nucleases (URI domain)
A6J44_04740	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J44_04745	SM00903	Flavin reductase like domain
A6J44_04820	SM00904	Riboflavin kinase
A6J44_04915	SM00481	DNA polymerase alpha chain like domain
A6J44_04940	SM00481	DNA polymerase alpha chain like domain
A6J44_05025	SM00965	Secretin and TonB N terminus short domain
A6J44_05115	SM00448	cheY-homologous receiver domain
A6J44_05115	SM00862	Transcriptional regulatory protein, C terminal
A6J44_05120	SM00387	Histidine kinase-like ATPases
A6J44_05120	SM00388	His Kinase A (phosphoacceptor) domain
A6J44_05125	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J44_05140	SM00487	DEAD-like helicases superfamily
A6J44_05140	SM00490	helicase superfamily c-terminal domain
A6J44_05150	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A6J44_05165	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
A6J44_05255	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A6J44_05260	SM00478	endonuclease III
A6J44_05260	SM00525	A6J44_05260
A6J44_05285	SM01091	Transporter associated domain
A6J44_05325	SM00487	DEAD-like helicases superfamily
A6J44_05325	SM00490	helicase superfamily c-terminal domain
A6J44_05370	SM01126	A6J44_05370
A6J44_05425	SM00382	ATPases associated with a variety of cellular activities
A6J44_05460	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A6J44_05460	SM00387	Histidine kinase-like ATPases
A6J44_05460	SM00388	His Kinase A (phosphoacceptor) domain
A6J44_05465	SM00448	cheY-homologous receiver domain
A6J44_05465	SM00862	Transcriptional regulatory protein, C terminal
A6J44_05510	SM00829	Enoylreductase
A6J44_05555	SM00434	DNA Topoisomerase IV
A6J44_05560	SM00855	Phosphoglycerate mutase family
A6J44_05580	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A6J44_05600	SM00342	helix_turn_helix, arabinose operon control protein
A6J44_05650	SM00347	helix_turn_helix multiple antibiotic resistance protein
A6J44_05770	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A6J44_05770	SM00895	A6J44_05770
A6J44_05780	SM00420	helix_turn_helix, Deoxyribose operon repressor
A6J44_05780	SM01134	A6J44_05780
A6J44_05890	SM01323	A6J44_05890
A6J44_05905	SM01387	A6J44_05905
A6J44_05910	SM00382	ATPases associated with a variety of cellular activities
A6J44_05945	SM00357	Cold shock protein domain
A6J44_05945	SM00382	ATPases associated with a variety of cellular activities
A6J44_05945	SM00959	Rho termination factor, N-terminal domain
A6J44_05960	SM01126	A6J44_05960
A6J44_06035	SM00382	ATPases associated with a variety of cellular activities
A6J44_06155	SM00729	Elongator protein 3, MiaB family, Radical SAM
A6J44_06160	SM00292	breast cancer carboxy-terminal domain
A6J44_06160	SM00532	Ligase N family
A6J44_06165	SM00771	ZipA, C-terminal domain (FtsZ-binding)
A6J44_06170	SM00644	A6J44_06170
A6J44_06185	SM00919	Malic enzyme, NAD binding domain
A6J44_06185	SM01274	A6J44_06185
A6J44_06305	SM00358	Double-stranded RNA binding motif
A6J44_06305	SM00535	Ribonuclease III family
A6J44_06365	SM00382	ATPases associated with a variety of cellular activities
A6J44_06375	SM00954	Region found in RelA / SpoT proteins
A6J44_06380	SM00650	Ribosomal RNA adenine dimethylases
A6J44_06400	SM00869	Autotransporter beta-domain
A6J44_06405	SM00849	Metallo-beta-lactamase superfamily
A6J44_06415	SM00363	S4 RNA-binding domain
A6J44_06485	SM01091	Transporter associated domain
A6J44_06515	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A6J44_06560	SM00873	B3/4 domain
A6J44_06560	SM00874	tRNA synthetase B5 domain
A6J44_06560	SM00896	Ferredoxin-fold anticodon binding domain
A6J44_06565	SM00411	bacterial (prokaryotic) histone like domain
A6J44_06735	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J44_06735	SM00322	K homology RNA-binding domain
A6J44_06785	SM00838	Elongation factor G C-terminus
A6J44_06905	SM00382	ATPases associated with a variety of cellular activities
A6J44_06925	SM00450	Rhodanese Homology Domain
A6J44_06945	SM00062	Bacterial periplasmic substrate-binding proteins
A6J44_06955	SM00382	ATPases associated with a variety of cellular activities
A6J44_07000	SM00382	ATPases associated with a variety of cellular activities
A6J44_07010	SM01103	A6J44_07010
A6J44_07015	SM01004	Delta-aminolevulinic acid dehydratase
A6J44_07035	SM00363	S4 RNA-binding domain
A6J44_07085	SM00788	Adenylosuccinate synthetase
A6J44_07105	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A6J44_07140	SM00487	DEAD-like helicases superfamily
A6J44_07145	SM00382	ATPases associated with a variety of cellular activities
A6J44_07145	SM01086	C-terminal, D2-small domain, of ClpB protein
A6J44_07155	SM00357	Cold shock protein domain
A6J44_07235	SM00382	ATPases associated with a variety of cellular activities
A6J44_07320	SM00028	Tetratricopeptide repeats
A6J44_07345	SM01400	A6J44_07345
A6J44_07355	SM00936	Penicillin-binding protein 5, C-terminal domain 
A6J44_07365	SM00382	ATPases associated with a variety of cellular activities
A6J44_07410	SM00382	ATPases associated with a variety of cellular activities
A6J44_07555	SM00530	Helix-turn-helix XRE-family like proteins 
A6J44_07710	SM01040	BRO family, N-terminal domain
A6J44_07795	SM01126	A6J44_07795
A6J44_07880	SM01126	A6J44_07880
A6J44_07920	SM00116	Domain in cystathionine beta-synthase and other proteins.
A6J44_07920	SM01091	Transporter associated domain
A6J44_07930	SM00257	Lysin motif
A6J44_07985	SM00382	ATPases associated with a variety of cellular activities
A6J44_07985	SM01086	C-terminal, D2-small domain, of ClpB protein
A6J44_08090	SM00861	Transketolase, pyrimidine binding domain
A6J44_08155	SM00530	Helix-turn-helix XRE-family like proteins 
A6J44_08245	SM00400	zinc finger
A6J44_08245	SM00493	A6J44_08245
A6J44_08245	SM00766	DNA primase DnaG DnaB-binding
A6J44_08250	SM00957	SecA DEAD-like domain
A6J44_08250	SM00958	SecA preprotein cross-linking domain
A6J44_08285	SM00342	helix_turn_helix, arabinose operon control protein
A6J44_08390	SM00479	A6J44_08390
A6J44_08410	SM00318	Staphylococcal nuclease homologues
A6J44_08440	SM00836	DALR anticodon binding domain
A6J44_08440	SM01016	Arginyl tRNA synthetase N terminal dom
A6J44_08530	SM01130	A6J44_08530
A6J44_08545	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A6J44_08580	SM00841	Elongation factor P, C-terminal
A6J44_08580	SM01185	A6J44_08580
A6J44_08680	SM00861	Transketolase, pyrimidine binding domain
A6J44_08705	SM00881	CoA binding domain
A6J44_08760	SM00155	Phospholipase D. Active site motifs.
A6J44_08870	SM00463	Small MutS-related domain
A6J44_08920	SM00382	ATPases associated with a variety of cellular activities
A6J44_08940	SM00530	Helix-turn-helix XRE-family like proteins 
A6J44_08990	SM01207	A6J44_08990
A6J44_08995	SM00905	Dihydroneopterin aldolase
A6J44_09030	SM00843	A6J44_09030
A6J44_09040	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A6J44_09050	SM00917	LeuA allosteric (dimerisation) domain
A6J44_09065	SM00631	A6J44_09065
A6J44_09150	SM00248	ankyrin repeats
A6J44_09175	SM00363	S4 RNA-binding domain
A6J44_09185	SM00977	TilS substrate C-terminal domain
A6J44_09220	SM00729	Elongator protein 3, MiaB family, Radical SAM
A6J44_09220	SM00876	Biotin and Thiamin Synthesis associated domain
A6J44_09225	SM00854	Bacterial capsule synthesis protein PGA_cap
A6J44_09265	SM00838	Elongation factor G C-terminus
A6J44_09285	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J44_09285	SM00955	A6J44_09285
A6J44_09295	SM00116	Domain in cystathionine beta-synthase and other proteins.
A6J44_09295	SM01240	A6J44_09295
A6J44_09300	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A6J44_09305	SM00530	Helix-turn-helix XRE-family like proteins 
A6J44_09325	SM00729	Elongator protein 3, MiaB family, Radical SAM
A6J44_09345	SM00244	prohibitin homologues
A6J44_09355	SM00986	Uracil DNA glycosylase superfamily
A6J44_09355	SM00987	UreE urease accessory protein, C-terminal domain 
A6J44_09375	SM00470	ParB-like nuclease domain
A6J44_09410	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A6J44_09410	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A6J44_09410	SM00493	A6J44_09410
A6J44_09465	SM00487	DEAD-like helicases superfamily
A6J44_09510	SM00966	SpoVT / AbrB like domain 
A6J44_09690	SM00382	ATPases associated with a variety of cellular activities
A6J44_09710	SM00411	bacterial (prokaryotic) histone like domain
A6J44_09715	SM00382	ATPases associated with a variety of cellular activities
A6J44_09715	SM00464	Found in ATP-dependent protease La (LON)
A6J44_09735	SM00382	ATPases associated with a variety of cellular activities
A6J44_09740	SM00382	ATPases associated with a variety of cellular activities
A6J44_09775	SM00382	ATPases associated with a variety of cellular activities
A6J44_09795	SM00382	ATPases associated with a variety of cellular activities
A6J44_09820	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A6J44_09820	SM00387	Histidine kinase-like ATPases
A6J44_09825	SM00421	helix_turn_helix, Lux Regulon
A6J44_09825	SM00448	cheY-homologous receiver domain
A6J44_09860	SM01001	AIR carboxylase
A6J44_09880	SM00853	MutL C terminal dimerisation domain
A6J44_09880	SM01340	A6J44_09880
A6J44_09885	SM00382	ATPases associated with a variety of cellular activities
A6J44_09910	SM00382	ATPases associated with a variety of cellular activities
A6J44_09965	SM01126	A6J44_09965
A6J44_10015	SM00530	Helix-turn-helix XRE-family like proteins 
A6J44_10100	SM00829	Enoylreductase
A6J44_10105	SM00478	endonuclease III
A6J44_10105	SM00525	A6J44_10105
A6J44_10190	SM00487	DEAD-like helicases superfamily
A6J44_10195	SM00382	ATPases associated with a variety of cellular activities
A6J44_10205	SM00869	Autotransporter beta-domain
A6J44_10320	SM01329	A6J44_10320
A6J44_10395	SM00845	GatB domain
A6J44_10410	SM00363	S4 RNA-binding domain
A6J44_10465	SM00487	DEAD-like helicases superfamily
A6J44_10465	SM00490	helicase superfamily c-terminal domain
A6J44_10500	SM00382	ATPases associated with a variety of cellular activities
A6J44_10500	SM00994	ClpX C4-type zinc finger
A6J44_10500	SM01086	C-terminal, D2-small domain, of ClpB protein
A6J44_10535	SM00487	DEAD-like helicases superfamily
A6J44_10585	SM00271	DnaJ molecular chaperone homology domain
A6J44_10590	SM00434	DNA Topoisomerase IV
A6J44_10595	SM01126	A6J44_10595
A6J44_10625	SM00487	DEAD-like helicases superfamily
A6J44_10625	SM00490	helicase superfamily c-terminal domain
A6J44_10625	SM00982	A6J44_10625
A6J44_10625	SM01058	CarD-like/TRCF domain
A6J44_10650	SM01192	A6J44_10650
A6J44_10650	SM01193	A6J44_10650
A6J44_10680	SM00563	Phosphate acyltransferases
A6J44_10685	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A6J44_10685	SM01232	A6J44_10685
A6J44_10700	SM00257	Lysin motif
A6J44_10720	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J44_10725	SM00411	bacterial (prokaryotic) histone like domain
A6J44_10730	SM00422	helix_turn_helix, mercury resistance
A6J44_10750	SM00562	A6J44_10750
A6J44_10760	SM00028	Tetratricopeptide repeats
A6J44_10795	SM00843	A6J44_10795
A6J44_10860	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A6J44_10860	SM00465	GIY-YIG type nucleases (URI domain)
A6J44_10885	SM01057	Eukaryotic-type carbonic anhydrase
A6J44_10890	SM00487	DEAD-like helicases superfamily
A6J44_10890	SM00490	helicase superfamily c-terminal domain
A6J44_10895	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A6J44_10895	SM00245	tail specific protease
A6J44_10915	SM00732	Likely ribonuclease with RNase H fold.
A6J44_10970	SM01126	A6J44_10970
A6J44_10975	SM00867	YceI-like domain 
A6J44_11010	SM00271	DnaJ molecular chaperone homology domain
A6J44_11050	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A6J44_11060	SM00226	Low molecular weight phosphatase family
A6J44_11205	SM00966	SpoVT / AbrB like domain 
A6J44_11315	SM01040	BRO family, N-terminal domain
A6J44_11385	SM00530	Helix-turn-helix XRE-family like proteins 
A6J44_11585	SM00316	Ribosomal protein S1-like RNA-binding domain
A6J44_11585	SM00322	K homology RNA-binding domain
A6J44_11635	SM00344	helix_turn_helix ASNC type
A6J44_11640	SM01005	Alanine racemase, C-terminal domain
A6J44_11680	SM01126	A6J44_11680
A6J44_11700	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A6J44_11745	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A6J44_11745	SM00954	Region found in RelA / SpoT proteins
A6J44_11750	SM01409	A6J44_11750
A6J44_11755	SM00072	Guanylate kinase homologues.
A6J44_11795	SM01126	A6J44_11795
A6J44_11890	SM00945	ProQ/FINO family
A6J44_11895	SM00387	Histidine kinase-like ATPases
A6J44_11895	SM00433	TopoisomeraseII
A6J44_11915	SM00937	A6J44_11915
A6J44_11925	SM00870	A6J44_11925
A6J44_12025	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A6J44_12035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A6J44_12035	SM00895	A6J44_12035
A6J44_12160	SM00954	Region found in RelA / SpoT proteins
A6J44_12255	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A6J44_12290	SM00382	ATPases associated with a variety of cellular activities
A6J44_12350	SM00344	helix_turn_helix ASNC type
A6J44_12375	SM01126	A6J44_12375
A6J44_12390	SM00900	A6J44_12390
A6J44_12425	SM00971	Serine acetyltransferase, N-terminal
A6J44_12485	SM00382	ATPases associated with a variety of cellular activities
A6J44_12500	SM00487	DEAD-like helicases superfamily
A6J44_12500	SM00490	helicase superfamily c-terminal domain
A6J44_12510	SM00382	ATPases associated with a variety of cellular activities
A6J44_12635	SM00798	AICARFT/IMPCHase bienzyme
A6J44_12635	SM00851	MGS-like domain
A6J44_12655	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A6J44_12655	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A6J44_12690	SM00960	Roadblock/LC7 domain
A6J44_12880	SM00646	A6J44_12880
A6J44_12890	SM00981	A6J44_12890
A6J44_12920	SM00830	Chorismate mutase type II
A6J44_13045	SM00864	Tubulin/FtsZ family, GTPase domain
A6J44_13045	SM00865	Tubulin/FtsZ family, C-terminal domain
A6J44_13050	SM00842	Cell division protein FtsA
A6J44_13090	SM00671	Sel1-like repeats.
A6J44_13175	SM00382	ATPases associated with a variety of cellular activities
A6J44_13240	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A6J44_13320	SM00382	ATPases associated with a variety of cellular activities
A6J44_13360	SM00100	Cyclic nucleotide-monophosphate binding domain
A6J44_13360	SM00419	helix_turn_helix, cAMP Regulatory protein
A6J44_13365	SM00729	Elongator protein 3, MiaB family, Radical SAM
