locus-tag	class	description
PDUR_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
PDUR_00010	COG0592	DNA-directed DNA polymerase activity
PDUR_00015	COG2501	S4 domain
PDUR_00020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
PDUR_00030	COG0187	DNA topoisomerase II activity
PDUR_00040	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PDUR_00045	COG3437	response regulator, receiver
PDUR_00080	COG1982	Orn Lys Arg decarboxylase major
PDUR_00085	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
PDUR_00090	COG3870	Protein conserved in bacteria
PDUR_00095	COG1728	Protein conserved in bacteria
PDUR_00100	COG0470	DNA polymerase III
PDUR_00105	COG1774	PSP1 C-terminal conserved region
PDUR_00110	COG4467	Involved in initiation control of chromosome replication
PDUR_00115	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
PDUR_00120	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
PDUR_00125	COG2002	toxin-antitoxin pair type II binding
PDUR_00130	COG1078	dGTPase activity
PDUR_00135	COG0084	hydrolase, TatD family'
PDUR_00140	COG3583	domain protein
PDUR_00140	COG3584	3D domain protein
PDUR_00145	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
PDUR_00150	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
PDUR_00160	COG4466	Protein conserved in bacteria
PDUR_00170	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
PDUR_00175	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PDUR_00180	COG2088	sporulation resulting in formation of a cellular spore
PDUR_00185	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
PDUR_00190	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PDUR_00210	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
PDUR_00215	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PDUR_00220	COG2002	toxin-antitoxin pair type II binding
PDUR_00225	COG2244	polysaccharide biosynthetic process
PDUR_00230	COG3956	TIGRFAM MazG family protein
PDUR_00235	COG0776	regulation of translation
PDUR_00240	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
PDUR_00260	COG1098	S1 RNA binding domain
PDUR_00265	COG2208	phosphoserine phosphatase activity
PDUR_00270	COG2304	oxidoreductase activity
PDUR_00275	COG0515	serine threonine protein kinase
PDUR_00285	COG0037	tRNA processing
PDUR_00290	COG0037	tRNA processing
PDUR_00290	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
PDUR_00295	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
PDUR_00300	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
PDUR_00305	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
PDUR_00310	COG0157	Belongs to the NadC ModD family
PDUR_00320	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
PDUR_00325	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PDUR_00330	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
PDUR_00335	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
PDUR_00340	COG0512	Glutamine amidotransferase of anthranilate synthase
PDUR_00345	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
PDUR_00350	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
PDUR_00355	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
PDUR_00360	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
PDUR_00365	COG1396	sequence-specific DNA binding
PDUR_00370	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
PDUR_00400	COG0516	GMP reductase activity
PDUR_00400	COG0517	IMP dehydrogenase activity
PDUR_00405	COG1686	Belongs to the peptidase S11 family
PDUR_00420	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
PDUR_00445	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PDUR_00450	COG0590	tRNA wobble adenosine to inosine editing
PDUR_00455	COG3852	Histidine kinase
PDUR_00460	COG1187	pseudouridine synthase activity
PDUR_00465	COG1360	Flagellar Motor Protein
PDUR_00470	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
PDUR_00485	COG2154	pterin-4-alpha-carbinolamine dehydratase
PDUR_00490	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
PDUR_00490	COG2010	Cytochrome c
PDUR_00500	COG0791	NLP P60 protein
PDUR_00525	COG0577	efflux transmembrane transporter activity
PDUR_00530	COG1136	(ABC) transporter
PDUR_00535	COG2770	Histidine kinase
PDUR_00535	COG2205	protein histidine kinase activity
PDUR_00545	COG2002	toxin-antitoxin pair type II binding
PDUR_00555	COG2094	Belongs to the DNA glycosylase MPG family
PDUR_00560	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
PDUR_00575	COG0018	arginyl-trna synthetase
PDUR_00590	COG3343	RNA polymerase activity
PDUR_00600	COG0504	CTP synthase activity
PDUR_00605	COG2204	response regulator
PDUR_00615	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PDUR_00620	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
PDUR_00625	COG0820	rRNA (adenine-C2-)-methyltransferase activity
PDUR_00630	COG0254	rRNA binding
PDUR_00640	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PDUR_00645	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
PDUR_00650	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
PDUR_00730	COG2508	Transcriptional regulator
PDUR_00735	COG3842	ATPase activity
PDUR_00740	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
PDUR_00745	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
PDUR_00750	COG0546	phosphoglycolate phosphatase activity
PDUR_00755	COG0110	maltose O-acetyltransferase activity
PDUR_00765	COG1070	Carbohydrate kinase
PDUR_00780	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
PDUR_00785	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
PDUR_00790	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
PDUR_00795	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
PDUR_00800	COG0131	Imidazoleglycerol-phosphate dehydratase
PDUR_00805	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
PDUR_00810	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
PDUR_00820	COG0107	imidazoleglycerol-phosphate synthase activity
PDUR_00825	COG0140	phosphoribosyl-ATP diphosphatase activity
PDUR_00825	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
PDUR_00830	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
PDUR_00835	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PDUR_00850	COG4533	DNA binding
PDUR_00850	COG4533	DNA binding
PDUR_00865	COG1940	carbohydrate kinase activity
PDUR_00870	COG1660	Displays ATPase and GTPase activities
PDUR_00875	COG0391	Required for morphogenesis under gluconeogenic growth conditions
PDUR_00880	COG1481	regulation of sporulation
PDUR_00885	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
PDUR_00905	COG0740	serine-type endopeptidase activity
PDUR_00925	COG0126	phosphoglycerate kinase activity
PDUR_00930	COG0149	triose-phosphate isomerase activity
PDUR_00935	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
PDUR_00940	COG0148	phosphopyruvate hydratase activity
PDUR_00945	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
PDUR_00950	COG0557	exoribonuclease II activity
PDUR_00955	COG1595	DNA-templated transcription, initiation
PDUR_00965	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
PDUR_00985	COG3739	integral membrane protein
PDUR_00990	COG3655	Transcriptional regulator
PDUR_01040	COG4185	zeta toxin
PDUR_01070	COG1404	Belongs to the peptidase S8 family
PDUR_01085	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
PDUR_01090	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PDUR_01095	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PDUR_01110	COG0596	Alpha beta hydrolase
PDUR_01115	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_01125	COG2207	Transcriptional regulator
PDUR_01135	COG0656	L-ascorbic acid biosynthetic process
PDUR_01140	COG0583	DNA-binding transcription factor activity
PDUR_01170	COG0534	Mate efflux family protein
PDUR_01185	COG0438	transferase activity, transferring glycosyl groups
PDUR_01200	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_01205	COG4521	taurine ABC transporter
PDUR_01215	COG2719	SpoVR family
PDUR_01220	COG2718	Belongs to the UPF0229 family
PDUR_01225	COG2766	serine protein kinase
PDUR_01285	COG0572	uridine kinase
PDUR_01295	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
PDUR_01300	COG0686	Belongs to the AlaDH PNT family
PDUR_01305	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
PDUR_01305	COG2508	Transcriptional regulator
PDUR_01320	COG1846	Transcriptional regulator
PDUR_01320	COG0456	acetyltransferase
PDUR_01325	COG1404	Belongs to the peptidase S8 family
PDUR_01345	COG3706	GGDEF domain
PDUR_01355	COG0477	Major facilitator Superfamily
PDUR_01360	COG2169	Transcriptional regulator
PDUR_01365	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
PDUR_01370	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
PDUR_01375	COG1278	Cold shock
PDUR_01380	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PDUR_01410	COG4126	flavin adenine dinucleotide binding
PDUR_01415	COG2309	aminopeptidase activity
PDUR_01425	COG2508	Transcriptional regulator
PDUR_01440	COG0747	negative chemotaxis
PDUR_01445	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
PDUR_01450	COG0444	Belongs to the ABC transporter superfamily
PDUR_01455	COG4608	Belongs to the ABC transporter superfamily
PDUR_01525	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_01545	COG0210	DNA helicase
PDUR_01550	COG2267	carboxylic ester hydrolase activity
PDUR_01570	COG1609	Transcriptional regulator
PDUR_01580	COG1131	(ABC) transporter
PDUR_01600	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PDUR_01615	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
PDUR_01620	COG2733	membrane
PDUR_01630	COG0438	transferase activity, transferring glycosyl groups
PDUR_01650	COG1523	belongs to the glycosyl hydrolase 13 family
PDUR_01655	COG0493	'glutamate synthase
PDUR_01660	COG0622	Phosphoesterase
PDUR_01680	COG0765	amino acid transport
PDUR_01685	COG1126	abc transporter atp-binding protein
PDUR_01690	COG2310	stress, protein
PDUR_01695	COG0861	Integral membrane protein TerC family
PDUR_01705	COG2116	formate transmembrane transporter activity
PDUR_01720	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PDUR_01725	COG0583	DNA-binding transcription factor activity
PDUR_01740	COG0745	RESPONSE REGULATOR receiver
PDUR_01740	COG3706	GGDEF domain
PDUR_01750	COG3275	phosphorelay sensor kinase activity
PDUR_01755	COG3279	Response regulator of the LytR AlgR family
PDUR_01760	COG2223	nitrite transmembrane transporter activity
PDUR_01805	COG2267	carboxylic ester hydrolase activity
PDUR_01815	COG0673	inositol 2-dehydrogenase activity
PDUR_01820	COG1012	belongs to the aldehyde dehydrogenase family
PDUR_01830	COG0508	dehydrogenase complex catalyzes the overall conversion of
PDUR_01835	COG0567	Dehydrogenase, E1 component
PDUR_01845	COG1396	sequence-specific DNA binding
PDUR_01850	COG4989	oxidoreductase activity
PDUR_01865	COG3706	GGDEF domain
PDUR_01890	COG2217	Heavy metal translocating P-type atpase
PDUR_01905	COG1116	anion transmembrane transporter activity
PDUR_01910	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_01920	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PDUR_01935	COG0745	RESPONSE REGULATOR receiver
PDUR_01940	COG2205	protein histidine kinase activity
PDUR_01960	COG0640	Transcriptional regulator
PDUR_01965	COG2217	Heavy metal translocating P-type atpase
PDUR_01975	COG4846	Membrane protein involved in cytochrome C biogenesis
PDUR_01985	COG2706	6-phosphogluconolactonase activity
PDUR_01990	COG0142	geranyltranstransferase activity
PDUR_02005	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
PDUR_02010	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
PDUR_02015	COG4208	sulfate ABC transporter
PDUR_02020	COG5583	Uncharacterized small protein (DUF2292)
PDUR_02030	COG2323	membrane
PDUR_02050	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
PDUR_02050	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
PDUR_02080	COG1760	l-serine dehydratase
PDUR_02090	COG4895	conserved protein (DUF2196)
PDUR_02105	COG2746	aminoglycoside 3-N-acetyltransferase activity
PDUR_02115	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
PDUR_02120	COG0431	NADPH-dependent FMN reductase
PDUR_02135	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PDUR_02140	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PDUR_02145	COG0602	queuosine metabolic process
PDUR_02160	COG0011	TIGRFAM Protein of
PDUR_02190	COG2190	(PTS) system
PDUR_02195	COG2199	diguanylate cyclase activity
PDUR_02195	COG2203	Gaf domain
PDUR_02215	COG1122	ATPase activity
PDUR_02235	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
PDUR_02240	COG0109	protoheme IX farnesyltransferase activity
PDUR_02285	COG1252	NADH dehydrogenase
PDUR_02300	COG2205	protein histidine kinase activity
PDUR_02300	COG4999	Histidine kinase
PDUR_02300	COG3437	response regulator, receiver
PDUR_02300	COG3850	Histidine kinase
PDUR_02310	COG0702	epimerase
PDUR_02315	COG0251	oxidation-reduction process
PDUR_02330	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
PDUR_02340	COG2357	RelA SpoT domain protein
PDUR_02360	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PDUR_02395	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
PDUR_02410	COG3336	cytochrome c oxidase
PDUR_02420	COG0840	transmembrane signaling receptor activity
PDUR_02455	COG1131	(ABC) transporter
PDUR_02460	COG4152	abc transporter atp-binding protein
PDUR_02465	COG1668	transmembrane transport
PDUR_02470	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PDUR_02480	COG1132	(ABC) transporter
PDUR_02490	COG1032	radical SAM domain protein
PDUR_02535	COG2814	Major facilitator Superfamily
PDUR_02565	COG0477	Major facilitator Superfamily
PDUR_02580	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PDUR_02590	COG3716	PTS system mannose fructose sorbose family IID component
PDUR_02605	COG1737	Transcriptional regulator
PDUR_02610	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
PDUR_02615	COG1064	alcohol dehydrogenase
PDUR_02620	COG1309	transcriptional regulator
PDUR_02625	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
PDUR_02630	COG0667	Aldo Keto reductase
PDUR_02635	COG2814	Major facilitator Superfamily
PDUR_02640	COG2207	Transcriptional regulator
PDUR_02645	COG0667	Aldo Keto reductase
PDUR_02660	COG1175	transmembrane transport
PDUR_02665	COG0395	ABC-type sugar transport system, permease component
PDUR_02670	COG2972	Histidine kinase
PDUR_02675	COG4753	response regulator
PDUR_02675	COG2207	Transcriptional regulator
PDUR_02680	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_02685	COG2814	Major facilitator Superfamily
PDUR_02690	COG0789	Transcriptional regulator
PDUR_02715	COG0038	chloride channel
PDUR_02735	COG2814	Major facilitator Superfamily
PDUR_02740	COG0789	Transcriptional regulator
PDUR_02750	COG0300	oxidoreductase activity
PDUR_02790	COG1595	DNA-templated transcription, initiation
PDUR_02795	COG0778	Nitroreductase
PDUR_02800	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
PDUR_02805	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
PDUR_02820	COG0659	secondary active sulfate transmembrane transporter activity
PDUR_02860	COG2207	Transcriptional regulator
PDUR_02860	COG4753	response regulator
PDUR_02875	COG3695	enzyme binding
PDUR_02885	COG2329	Antibiotic biosynthesis monooxygenase
PDUR_02900	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
PDUR_02905	COG0463	Glycosyl transferase, family 2
PDUR_02920	COG0463	Glycosyl transferase, family 2
PDUR_02935	COG1653	transport
PDUR_02950	COG1309	transcriptional regulator
PDUR_02960	COG0778	Nitroreductase
PDUR_03040	COG0574	Belongs to the PEP-utilizing enzyme family
PDUR_03040	COG3848	Pyruvate phosphate dikinase
PDUR_03045	COG0596	Alpha beta hydrolase
PDUR_03060	COG0583	DNA-binding transcription factor activity
PDUR_03070	COG0604	alcohol dehydrogenase
PDUR_03075	COG1733	regulation of RNA biosynthetic process
PDUR_03085	COG1522	sequence-specific DNA binding
PDUR_03090	COG0860	N-Acetylmuramoyl-L-alanine amidase
PDUR_03105	COG5002	protein histidine kinase activity
PDUR_03110	COG0745	RESPONSE REGULATOR receiver
PDUR_03115	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
PDUR_03120	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
PDUR_03125	COG0058	SHG alpha-glucan phosphorylase activity
PDUR_03130	COG1956	GAF domain-containing protein
PDUR_03140	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PDUR_03145	COG0477	Major facilitator Superfamily
PDUR_03150	COG1846	Transcriptional regulator
PDUR_03155	COG2814	Major facilitator Superfamily
PDUR_03160	COG1131	(ABC) transporter
PDUR_03170	COG2081	HI0933 family
PDUR_03215	COG0456	acetyltransferase
PDUR_03220	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
PDUR_03230	COG0302	gtp cyclohydrolase
PDUR_03235	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
PDUR_03245	COG1414	Transcriptional regulator
PDUR_03260	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
PDUR_03275	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PDUR_03285	COG1045	serine acetyltransferase
PDUR_03290	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
PDUR_03310	COG4294	response to UV
PDUR_03335	COG0242	peptide deformylase activity
PDUR_03340	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
PDUR_03350	COG1316	TRANSCRIPTIONal
PDUR_03355	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
PDUR_03370	COG2814	Major facilitator Superfamily
PDUR_03380	COG0586	Pfam SNARE associated Golgi protein
PDUR_03385	COG0726	polysaccharide deacetylase
PDUR_03395	COG1305	Transglutaminase-like
PDUR_03410	COG2211	Major facilitator Superfamily
PDUR_03410	COG2190	(PTS) system
PDUR_03415	COG2252	PERMEase
PDUR_03430	COG0463	Glycosyl transferase, family 2
PDUR_03470	COG1733	regulation of RNA biosynthetic process
PDUR_03475	COG2814	Major facilitator Superfamily
PDUR_03485	COG0589	response to stress
PDUR_03505	COG1122	ATPase activity
PDUR_03515	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PDUR_03560	COG0579	oxidoreductase
PDUR_03575	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
PDUR_03580	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
PDUR_03585	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
PDUR_03590	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
PDUR_03595	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PDUR_03600	COG0047	phosphoribosylformylglycinamidine synthase activity
PDUR_03605	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PDUR_03610	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
PDUR_03620	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
PDUR_03625	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
PDUR_03635	COG0151	Belongs to the GarS family
PDUR_03640	COG0653	protein targeting
PDUR_03655	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
PDUR_03665	COG1007	ATP synthesis coupled electron transport
PDUR_03680	COG3384	dioxygenase
PDUR_03705	COG1177	transmembrane transport
PDUR_03710	COG3842	ATPase activity
PDUR_03730	COG1470	cell adhesion involved in biofilm formation
PDUR_03735	COG1392	Phosphate transport regulator
PDUR_03740	COG0306	phosphate transporter
PDUR_03745	COG1126	abc transporter atp-binding protein
PDUR_03750	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PDUR_03755	COG0765	amino acid transport
PDUR_03760	COG0765	amino acid transport
PDUR_03765	COG4191	Histidine kinase
PDUR_03770	COG0784	Response regulator, receiver
PDUR_03775	COG0598	Magnesium transport protein CorA
PDUR_03785	COG4496	protein, YerC YecD
PDUR_03795	COG1597	lipid kinase activity
PDUR_03800	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PDUR_03905	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
PDUR_03940	COG3541	Predicted nucleotidyltransferase
PDUR_03995	COG1053	succinate dehydrogenase
PDUR_04010	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
PDUR_04020	COG4303	Ethanolamine ammonia lyase large subunit
PDUR_04025	COG4302	ethanolamine ammonia-lyase activity
PDUR_04040	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
PDUR_04050	COG0747	negative chemotaxis
PDUR_04055	COG0601	transmembrane transport
PDUR_04065	COG0444	Belongs to the ABC transporter superfamily
PDUR_04070	COG4608	Belongs to the ABC transporter superfamily
PDUR_04170	COG3344	reverse transcriptase
PDUR_04275	COG3335	DDE superfamily endonuclease
PDUR_04300	COG0778	Nitroreductase
PDUR_04305	COG0583	DNA-binding transcription factor activity
PDUR_04310	COG1309	transcriptional regulator
PDUR_04315	COG2267	carboxylic ester hydrolase activity
PDUR_04360	COG2186	Transcriptional regulator
PDUR_04370	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
PDUR_04385	COG2211	Major facilitator Superfamily
PDUR_04410	COG2226	methyltransferase
PDUR_04420	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PDUR_04425	COG1476	TRANSCRIPTIONal
PDUR_04455	COG4443	Transcriptional Coactivator p15 (PC4)
PDUR_04495	COG4974	Belongs to the 'phage' integrase family
PDUR_04505	COG2315	Protein conserved in bacteria
PDUR_04685	COG4974	Belongs to the 'phage' integrase family
PDUR_04730	COG5492	domain, Protein
PDUR_04945	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_04950	COG2207	Transcriptional regulator
PDUR_04970	COG0693	protein deglycase activity
PDUR_05000	COG2814	Major facilitator Superfamily
PDUR_05030	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_05035	COG1012	belongs to the aldehyde dehydrogenase family
PDUR_05040	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_05120	COG3706	GGDEF domain
PDUR_05120	COG0745	RESPONSE REGULATOR receiver
PDUR_05145	COG4221	oxidoreductase activity
PDUR_05165	COG0604	alcohol dehydrogenase
PDUR_05185	COG3527	Alpha-acetolactate decarboxylase
PDUR_05190	COG0028	Belongs to the TPP enzyme family
PDUR_05205	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
PDUR_05210	COG0367	asparagine synthase
PDUR_05225	COG1132	(ABC) transporter
PDUR_05255	COG5434	Belongs to the glycosyl hydrolase 28 family
PDUR_05265	COG0133	tryptophan synthase activity
PDUR_05270	COG0159	tryptophan synthase activity
PDUR_05280	COG0489	protein tyrosine kinase activity
PDUR_05285	COG1086	Polysaccharide biosynthesis protein
PDUR_05290	COG0438	transferase activity, transferring glycosyl groups
PDUR_05300	COG0438	transferase activity, transferring glycosyl groups
PDUR_05320	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
PDUR_05325	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
PDUR_05345	COG1216	Glycosyl transferase, family 2
PDUR_05375	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
PDUR_05395	COG0326	Molecular chaperone. Has ATPase activity
PDUR_05405	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
PDUR_05420	COG1131	(ABC) transporter
PDUR_05430	COG2378	regulation of single-species biofilm formation
PDUR_05460	COG0860	N-Acetylmuramoyl-L-alanine amidase
PDUR_05470	COG1683	Conserved Protein
PDUR_05585	COG0583	DNA-binding transcription factor activity
PDUR_05595	COG0753	catalase activity
PDUR_05605	COG0583	DNA-binding transcription factor activity
PDUR_05620	COG0738	Major facilitator superfamily
PDUR_05625	COG0710	3-dehydroquinate dehydratase activity
PDUR_05630	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
PDUR_05635	COG0789	Transcriptional regulator
PDUR_05655	COG0673	inositol 2-dehydrogenase activity
PDUR_05670	COG0640	Transcriptional regulator
PDUR_05675	COG2962	Rard protein
PDUR_05680	COG0738	Major facilitator superfamily
PDUR_05690	COG1609	Transcriptional regulator
PDUR_05715	COG4474	Belongs to the UPF0398 family
PDUR_05745	COG0494	nUDIX hydrolase
PDUR_05845	COG0840	transmembrane signaling receptor activity
PDUR_05855	COG1845	cytochrome c oxidase, subunit III
PDUR_05865	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
PDUR_05870	COG0726	polysaccharide deacetylase
PDUR_05880	COG0477	Major facilitator Superfamily
PDUR_05885	COG1725	Transcriptional regulator
PDUR_05890	COG1131	(ABC) transporter
PDUR_05905	COG2814	Major facilitator Superfamily
PDUR_05910	COG0789	Transcriptional regulator
PDUR_05925	COG1227	inorganic diphosphatase activity
PDUR_05930	COG1959	2 iron, 2 sulfur cluster binding
PDUR_05935	COG0778	Nitroreductase
PDUR_05940	COG1741	Belongs to the pirin family
PDUR_05950	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
PDUR_05955	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PDUR_05970	COG2205	protein histidine kinase activity
PDUR_05990	COG2197	response regulator
PDUR_06000	COG0489	protein tyrosine kinase activity
PDUR_06005	COG1210	Utp--glucose-1-phosphate uridylyltransferase
PDUR_06010	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
PDUR_06015	COG1216	Glycosyl transferase, family 2
PDUR_06025	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
PDUR_06045	COG0438	transferase activity, transferring glycosyl groups
PDUR_06050	COG0438	transferase activity, transferring glycosyl groups
PDUR_06055	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
PDUR_06080	COG0783	Belongs to the Dps family
PDUR_06105	COG0444	Belongs to the ABC transporter superfamily
PDUR_06110	COG4608	Belongs to the ABC transporter superfamily
PDUR_06115	COG0747	negative chemotaxis
PDUR_06130	COG0725	ABC transporter, periplasmic molybdate-binding protein
PDUR_06135	COG4149	molybdate abc transporter
PDUR_06140	COG1910	domain protein
PDUR_06150	COG0232	Belongs to the dGTPase family. Type 2 subfamily
PDUR_06170	COG3773	Cell wall hydrolase
PDUR_06175	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
PDUR_06180	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
PDUR_06185	COG1309	transcriptional regulator
PDUR_06190	COG1511	domain protein
PDUR_06195	COG0067	glutamate synthase
PDUR_06195	COG0070	glutamate synthase
PDUR_06195	COG0069	glutamate synthase activity
PDUR_06205	COG1131	(ABC) transporter
PDUR_06210	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
PDUR_06220	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PDUR_06225	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
PDUR_06230	COG3285	dna ligase
PDUR_06230	COG1793	dna ligase
PDUR_06235	COG1793	dna ligase
PDUR_06240	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
PDUR_06260	COG0802	atpase or kinase
PDUR_06265	COG1214	PFAM Peptidase M22, glycoprotease
PDUR_06270	COG0456	acetyltransferase
PDUR_06275	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
PDUR_06290	COG0488	(ABC) transporter
PDUR_06295	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
PDUR_06300	COG0315	cyclic pyranopterin monophosphate synthase activity
PDUR_06305	COG0521	Mo-molybdopterin cofactor biosynthetic process
PDUR_06310	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
PDUR_06315	COG0805	protein transport
PDUR_06320	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
PDUR_06325	COG0459	protein refolding
PDUR_06370	COG0626	cystathionine gamma-synthase activity
PDUR_06380	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
PDUR_06385	COG2011	ABC-type metal ion transport system permease component
PDUR_06400	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
PDUR_06415	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
PDUR_06445	COG1840	ABC-type Fe3 transport system, periplasmic component
PDUR_06450	COG3842	ATPase activity
PDUR_06455	COG1178	ABC-type Fe3 transport system permease component
PDUR_06480	COG2972	Histidine kinase
PDUR_06485	COG2207	Transcriptional regulator
PDUR_06485	COG4753	response regulator
PDUR_06485	COG4753	response regulator
PDUR_06485	COG2207	Transcriptional regulator
PDUR_06495	COG1846	Transcriptional regulator
PDUR_06505	COG0667	Aldo Keto reductase
PDUR_06530	COG1494	fructose-1,6-bisphosphatase
PDUR_06535	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
PDUR_06550	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PDUR_06555	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PDUR_06555	COG0574	Belongs to the PEP-utilizing enzyme family
PDUR_06560	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
PDUR_06565	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
PDUR_06570	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
PDUR_06580	COG0577	efflux transmembrane transporter activity
PDUR_06610	COG0584	glycerophosphoryl diester phosphodiesterase
PDUR_06625	COG0395	ABC-type sugar transport system, permease component
PDUR_06630	COG1175	transmembrane transport
PDUR_06635	COG1653	transport
PDUR_06650	COG1609	Transcriptional regulator
PDUR_06660	COG4209	transmembrane transport
PDUR_06665	COG0395	ABC-type sugar transport system, permease component
PDUR_06670	COG1653	transport
PDUR_06675	COG1621	beta-fructofuranosidase activity
PDUR_06680	COG1621	beta-fructofuranosidase activity
PDUR_06690	COG3118	belongs to the thioredoxin family
PDUR_06715	COG1376	ErfK ybiS ycfS ynhG family protein
PDUR_06720	COG1714	RDD family
PDUR_06730	COG0673	inositol 2-dehydrogenase activity
PDUR_06735	COG0488	(ABC) transporter
PDUR_06775	COG1846	Transcriptional regulator
PDUR_06780	COG1741	Belongs to the pirin family
PDUR_06785	COG2259	Doxx family
PDUR_06795	COG0745	RESPONSE REGULATOR receiver
PDUR_06835	COG0477	Major facilitator Superfamily
PDUR_06865	COG1733	regulation of RNA biosynthetic process
PDUR_06875	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PDUR_06885	COG4326	sporulation control protein
PDUR_06905	COG1032	radical SAM domain protein
PDUR_06955	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
PDUR_06960	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
PDUR_06970	COG2337	Toxic component of a toxin-antitoxin (TA) module
PDUR_06975	COG2183	response to ionizing radiation
PDUR_07015	COG1518	maintenance of DNA repeat elements
PDUR_07020	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PDUR_07025	COG1349	DNA-binding transcription factor activity
PDUR_07030	COG1105	Belongs to the carbohydrate kinase PfkB family
PDUR_07070	COG3091	SprT-like family
PDUR_07075	COG1522	sequence-specific DNA binding
PDUR_07095	COG0559	Belongs to the binding-protein-dependent transport system permease family
PDUR_07105	COG0411	ABC transporter
PDUR_07155	COG0386	Belongs to the glutathione peroxidase family
PDUR_07160	COG1764	response to oxidative stress
PDUR_07190	COG3011	Protein conserved in bacteria
PDUR_07250	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
PDUR_07255	COG0788	formyltetrahydrofolate deformylase activity
PDUR_07330	COG3123	guanosine phosphorylase activity
PDUR_07350	COG0166	Belongs to the GPI family
PDUR_07355	COG1739	Uncharacterized protein family UPF0029
PDUR_07360	COG1309	transcriptional regulator
PDUR_07365	COG0432	Pfam Uncharacterised protein family UPF0047
PDUR_07375	COG4208	sulfate ABC transporter
PDUR_07385	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
PDUR_07390	COG0321	lipoyl(octanoyl) transferase activity
PDUR_07390	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
PDUR_07400	COG1653	transport
PDUR_07405	COG1175	transmembrane transport
PDUR_07410	COG0395	ABC-type sugar transport system, permease component
PDUR_07415	COG1957	nucleoside hydrolase
PDUR_07440	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_07445	COG1854	S-ribosylhomocysteine lyase activity
PDUR_07450	COG1464	Belongs to the NlpA lipoprotein family
PDUR_07455	COG0436	Aminotransferase
PDUR_07465	COG2011	ABC-type metal ion transport system permease component
PDUR_07470	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
PDUR_07475	COG0561	phosphatase activity
PDUR_07485	COG2972	Histidine kinase
PDUR_07490	COG3279	Response regulator of the LytR AlgR family
PDUR_07515	COG0154	amidase activity
PDUR_07525	COG0095	Lipoate-protein ligase
PDUR_07530	COG2233	PERMEase
PDUR_07550	COG0840	transmembrane signaling receptor activity
PDUR_07555	COG0006	proline dipeptidase activity
PDUR_07560	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PDUR_07565	COG1247	-acetyltransferase
PDUR_07570	COG1733	regulation of RNA biosynthetic process
PDUR_07595	COG0456	acetyltransferase
PDUR_07600	COG1011	Hydrolase
PDUR_07610	COG1595	DNA-templated transcription, initiation
PDUR_07620	COG1477	protein flavinylation
PDUR_07630	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
PDUR_07635	COG4716	Myosin-crossreactive antigen
PDUR_07645	COG0514	ATP-dependent DNA helicase (RecQ)
PDUR_07650	COG1032	radical SAM domain protein
PDUR_07675	COG1482	cell wall glycoprotein biosynthetic process
PDUR_07680	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
PDUR_07685	COG1242	4 iron, 4 sulfur cluster binding
PDUR_07690	COG0220	tRNA (guanine-N7-)-methyltransferase activity
PDUR_07700	COG1215	transferase activity, transferring glycosyl groups
PDUR_07710	COG0291	Belongs to the bacterial ribosomal protein bL35 family
PDUR_07715	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
PDUR_07720	COG1607	acyl-coa hydrolase
PDUR_07755	COG0028	Belongs to the TPP enzyme family
PDUR_07760	COG0440	acetolactate synthase activity
PDUR_07765	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
PDUR_07770	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PDUR_07795	COG0667	Aldo Keto reductase
PDUR_07800	COG0473	3-isopropylmalate dehydrogenase activity
PDUR_07805	COG0450	alkyl hydroperoxide reductase
PDUR_07815	COG3852	Histidine kinase
PDUR_07845	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
PDUR_07870	COG0488	(ABC) transporter
PDUR_07885	COG2059	Chromate
PDUR_07890	COG2059	Chromate
PDUR_07895	COG0405	Gamma-glutamyltransferase
PDUR_07900	COG0154	amidase activity
PDUR_07905	COG2508	Transcriptional regulator
PDUR_07910	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
PDUR_07950	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
PDUR_07955	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
PDUR_07960	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
PDUR_07965	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
PDUR_07975	COG3481	metal-dependent phosphohydrolase, HD sub domain
PDUR_08005	COG1802	Transcriptional regulator
PDUR_08010	COG0477	Major facilitator Superfamily
PDUR_08015	COG0583	DNA-binding transcription factor activity
PDUR_08025	COG2182	Extracellular solute-binding protein
PDUR_08030	COG1175	transmembrane transport
PDUR_08035	COG3833	ABC-type maltose transport systems, permease component
PDUR_08040	COG1802	Transcriptional regulator
PDUR_08060	COG1335	isochorismatase
PDUR_08100	COG0366	Alpha amylase catalytic
PDUR_08105	COG0725	ABC transporter, periplasmic molybdate-binding protein
PDUR_08110	COG1674	ftsk spoiiie
PDUR_08115	COG2249	NAD(P)H dehydrogenase (quinone) activity
PDUR_08125	COG1349	DNA-binding transcription factor activity
PDUR_08130	COG0561	phosphatase activity
PDUR_08150	COG2226	methyltransferase
PDUR_08160	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
PDUR_08165	COG1917	Cupin 2, conserved barrel domain protein
PDUR_08165	COG4977	sequence-specific DNA binding
PDUR_08175	COG1263	PTS System
PDUR_08175	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PDUR_08185	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_08205	COG0604	alcohol dehydrogenase
PDUR_08215	COG1174	glycine betaine transport
PDUR_08225	COG1125	glycine betaine transport
PDUR_08240	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
PDUR_08250	COG2986	histidine ammonia-lyase
PDUR_08265	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PDUR_08275	COG1175	transmembrane transport
PDUR_08290	COG2972	Histidine kinase
PDUR_08295	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
PDUR_08295	COG2207	Transcriptional regulator
PDUR_08310	COG2814	Major facilitator Superfamily
PDUR_08325	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_08365	COG1191	sigma factor activity
PDUR_08465	COG1216	Glycosyl transferase, family 2
PDUR_08490	COG1653	transport
PDUR_08530	COG0656	L-ascorbic acid biosynthetic process
PDUR_08535	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PDUR_08550	COG3711	transcriptional antiterminator
PDUR_08555	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
PDUR_08565	COG1363	Peptidase, m42
PDUR_08580	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PDUR_08595	COG0714	Associated with various cellular activities
PDUR_08610	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
PDUR_08615	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
PDUR_08620	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
PDUR_08625	COG1534	Rna-binding protein
PDUR_08630	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
PDUR_08635	COG1713	HD superfamily hydrolase involved in NAD metabolism
PDUR_08640	COG0799	negative regulation of ribosome biogenesis
PDUR_08645	COG2996	Protein conserved in bacteria
PDUR_08650	COG2226	methyltransferase
PDUR_08660	COG2814	Major facilitator Superfamily
PDUR_08665	COG3279	Response regulator of the LytR AlgR family
PDUR_08670	COG2972	Histidine kinase
PDUR_08685	COG2207	Transcriptional regulator
PDUR_08695	COG0436	Aminotransferase
PDUR_08705	COG1131	(ABC) transporter
PDUR_08710	COG1309	transcriptional regulator
PDUR_08715	COG0114	fumarate hydratase activity
PDUR_08720	COG3833	ABC-type maltose transport systems, permease component
PDUR_08730	COG3546	catalase activity
PDUR_08735	COG0737	Belongs to the 5'-nucleotidase family
PDUR_08745	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
PDUR_08755	COG1737	Transcriptional regulator
PDUR_08770	COG0395	ABC-type sugar transport system, permease component
PDUR_08775	COG3842	ATPase activity
PDUR_08790	COG1472	Belongs to the glycosyl hydrolase 3 family
PDUR_08795	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
PDUR_08825	COG0778	Nitroreductase
PDUR_08845	COG3623	hexulose-6-phosphate isomerase
PDUR_08855	COG0673	inositol 2-dehydrogenase activity
PDUR_08865	COG0300	oxidoreductase activity
PDUR_08870	COG0789	Transcriptional regulator
PDUR_08875	COG0515	serine threonine protein kinase
PDUR_08875	COG2815	serine threonine protein kinase
PDUR_08880	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
PDUR_08885	COG1953	Uracil, thiamine, allantoin
PDUR_08905	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
PDUR_08920	COG3874	Sporulation protein YtfJ
PDUR_09035	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
PDUR_09045	COG4472	Bacterial protein of unknown function (DUF965)
PDUR_09065	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
PDUR_09080	COG0840	transmembrane signaling receptor activity
PDUR_09085	COG0768	penicillin binding
PDUR_09095	COG0726	polysaccharide deacetylase
PDUR_09105	COG0129	dihydroxy-acid dehydratase activity
PDUR_09120	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
PDUR_09135	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
PDUR_09140	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
PDUR_09145	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
PDUR_09150	COG1979	alcohol dehydrogenase
PDUR_09155	COG4591	ABC-type transport system involved in lipoprotein release permease component
PDUR_09160	COG1136	(ABC) transporter
PDUR_09160	COG0577	efflux transmembrane transporter activity
PDUR_09165	COG5002	protein histidine kinase activity
PDUR_09170	COG0745	RESPONSE REGULATOR receiver
PDUR_09180	COG2268	Band 7 protein
PDUR_09195	COG3711	transcriptional antiterminator
PDUR_09200	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PDUR_09200	COG2190	(PTS) system
PDUR_09200	COG1263	PTS System
PDUR_09225	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
PDUR_09255	COG1193	negative regulation of DNA recombination
PDUR_09260	COG3766	membrane
PDUR_09275	COG0477	Major facilitator Superfamily
PDUR_09280	COG1970	mechanosensitive ion channel activity
PDUR_09295	COG1522	sequence-specific DNA binding
PDUR_09300	COG0436	Aminotransferase
PDUR_09315	COG2096	Adenosyltransferase
PDUR_09320	COG0564	pseudouridine synthase activity
PDUR_09325	COG1393	Belongs to the ArsC family
PDUR_09340	COG1940	carbohydrate kinase activity
PDUR_09350	COG0598	Magnesium transport protein CorA
PDUR_09360	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
PDUR_09365	COG0626	cystathionine gamma-synthase activity
PDUR_09370	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
PDUR_09395	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
PDUR_09400	COG3584	3D domain protein
PDUR_09415	COG4585	Histidine kinase
PDUR_09420	COG2197	response regulator
PDUR_09425	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
PDUR_09430	COG0745	RESPONSE REGULATOR receiver
PDUR_09435	COG5002	protein histidine kinase activity
PDUR_09435	COG3850	Histidine kinase
PDUR_09440	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
PDUR_09445	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
PDUR_09450	COG0174	glutamine synthetase
PDUR_09460	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
PDUR_09490	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PDUR_09500	COG2766	serine protein kinase
PDUR_09510	COG2719	SpoVR family
PDUR_09520	COG1307	EDD domain protein, DegV family
PDUR_09525	COG2207	Transcriptional regulator
PDUR_09525	COG3708	Transcriptional regulator
PDUR_09530	COG1554	hydrolase, family 65, central catalytic
PDUR_09535	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
PDUR_09540	COG1609	Transcriptional regulator
PDUR_09545	COG2718	Belongs to the UPF0229 family
PDUR_09550	COG1574	metal-dependent hydrolase with the TIM-barrel fold
PDUR_09565	COG2363	Small membrane protein
PDUR_09575	COG3377	Domain of unknown function (DUF1805)
PDUR_09580	COG0783	Belongs to the Dps family
PDUR_09590	COG0396	ATPase activity
PDUR_09595	COG0719	Fe-S assembly protein
PDUR_09600	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PDUR_09605	COG0822	iron-sulfur transferase activity
PDUR_09610	COG0719	Fe-S assembly protein
PDUR_09625	COG1132	(ABC) transporter
PDUR_09630	COG1132	(ABC) transporter
PDUR_09640	COG2226	methyltransferase
PDUR_09655	COG0314	molybdopterin synthase activity
PDUR_09660	COG0737	Belongs to the 5'-nucleotidase family
PDUR_09675	COG0535	radical SAM domain protein
PDUR_09680	COG1253	flavin adenine dinucleotide binding
PDUR_09695	COG3546	catalase activity
PDUR_09700	COG2843	Capsule synthesis protein
PDUR_09705	COG2002	toxin-antitoxin pair type II binding
PDUR_09710	COG0189	ligase activity
PDUR_09720	COG0189	ligase activity
PDUR_09730	COG0189	ligase activity
PDUR_09745	COG4109	DRTGG domain
PDUR_09790	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
PDUR_09800	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
PDUR_09805	COG0825	malonyl-CoA metabolic process
PDUR_09810	COG0469	pyruvate kinase activity
PDUR_09815	COG0824	Thioesterase
PDUR_09820	COG3030	protein affecting phage T7 exclusion by the F plasmid
PDUR_09825	COG0628	permease
PDUR_09830	COG0372	Belongs to the citrate synthase family
PDUR_09835	COG0538	isocitrate dehydrogenase activity
PDUR_09850	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_09855	COG0352	thiamine-phosphate diphosphorylase activity
PDUR_09865	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
PDUR_09870	COG2022	thiamine diphosphate biosynthetic process
PDUR_09875	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
PDUR_09885	COG5002	protein histidine kinase activity
PDUR_09890	COG0745	RESPONSE REGULATOR receiver
PDUR_09900	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
PDUR_09905	COG0704	Plays a role in the regulation of phosphate uptake
PDUR_09915	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
PDUR_09920	COG1971	Probably functions as a manganese efflux pump
PDUR_09925	COG0237	dephospho-CoA kinase activity
PDUR_09930	COG0741	lytic transglycosylase activity
PDUR_09940	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
PDUR_09960	COG1657	PFAM Prenyltransferase squalene oxidase
PDUR_09965	COG1846	Transcriptional regulator
PDUR_09970	COG1309	transcriptional regulator
PDUR_09985	COG1309	transcriptional regulator
PDUR_10000	COG5002	protein histidine kinase activity
PDUR_10010	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_10015	COG1063	alcohol dehydrogenase
PDUR_10040	COG1522	sequence-specific DNA binding
PDUR_10065	COG4978	Transcriptional regulator
PDUR_10065	COG0789	Transcriptional regulator
PDUR_10070	COG2910	NAD(P)H-binding
PDUR_10100	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
PDUR_10155	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
PDUR_10160	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
PDUR_10165	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
PDUR_10170	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
PDUR_10185	COG1492	cobalamin metabolic process
PDUR_10195	COG2814	Major facilitator Superfamily
PDUR_10205	COG0745	RESPONSE REGULATOR receiver
PDUR_10205	COG2972	Histidine kinase
PDUR_10210	COG3279	Response regulator of the LytR AlgR family
PDUR_10230	COG2226	methyltransferase
PDUR_10260	COG0667	Aldo Keto reductase
PDUR_10265	COG0583	DNA-binding transcription factor activity
PDUR_10270	COG0697	spore germination
PDUR_10275	COG4555	ABC transporter
PDUR_10290	COG0438	transferase activity, transferring glycosyl groups
PDUR_10300	COG1609	Transcriptional regulator
PDUR_10340	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_10350	COG0789	Transcriptional regulator
PDUR_10360	COG2072	flavoprotein involved in K transport
PDUR_10380	COG0840	transmembrane signaling receptor activity
PDUR_10440	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
PDUR_10445	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
PDUR_10445	COG3933	PFAM sigma-54 factor interaction domain-containing protein
PDUR_10450	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
PDUR_10450	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PDUR_10455	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
PDUR_10455	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PDUR_10460	COG3715	PTS system
PDUR_10465	COG3716	PTS system mannose fructose sorbose family IID component
PDUR_10470	COG2112	serine threonine protein kinase
PDUR_10485	COG0395	ABC-type sugar transport system, permease component
PDUR_10490	COG1653	transport
PDUR_10500	COG3437	response regulator, receiver
PDUR_10515	COG0778	Nitroreductase
PDUR_10530	COG1442	glycosyl transferase family 8
PDUR_10530	COG1216	Glycosyl transferase, family 2
PDUR_10555	COG0740	serine-type endopeptidase activity
PDUR_10585	COG1428	Deoxynucleoside kinase
PDUR_10595	COG1309	transcriptional regulator
PDUR_10600	COG0477	Major facilitator Superfamily
PDUR_10620	COG3275	phosphorelay sensor kinase activity
PDUR_10630	COG1621	beta-fructofuranosidase activity
PDUR_10640	COG1175	transmembrane transport
PDUR_10645	COG0395	ABC-type sugar transport system, permease component
PDUR_10650	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PDUR_10660	COG0840	transmembrane signaling receptor activity
PDUR_10675	COG1902	pentaerythritol trinitrate reductase activity
PDUR_10680	COG2814	Major facilitator Superfamily
PDUR_10685	COG1309	transcriptional regulator
PDUR_10715	COG0675	Transposase, IS605 OrfB family
PDUR_10725	COG0583	DNA-binding transcription factor activity
PDUR_10730	COG1942	4-Oxalocrotonate Tautomerase
PDUR_10750	COG4585	Histidine kinase
PDUR_10755	COG2197	response regulator
PDUR_10765	COG2409	Drug exporters of the RND superfamily
PDUR_10785	COG0667	Aldo Keto reductase
PDUR_10825	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PDUR_10850	COG0701	Predicted permease
PDUR_10855	COG0523	cobalamin synthesis protein
PDUR_10860	COG0523	cobalamin synthesis protein
PDUR_10890	COG2445	Protein of unknown function DUF86
PDUR_10905	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
PDUR_10925	COG4844	belongs to the
PDUR_10930	COG0656	L-ascorbic acid biosynthetic process
PDUR_10935	COG0116	Belongs to the methyltransferase superfamily
PDUR_10950	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
PDUR_10965	COG2843	Capsule synthesis protein
PDUR_10970	COG0584	glycerophosphoryl diester phosphodiesterase
PDUR_10985	COG0488	(ABC) transporter
PDUR_10990	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
PDUR_10995	COG1363	Peptidase, m42
PDUR_11000	COG5416	Lipopolysaccharide assembly protein A domain
PDUR_11005	COG1164	Oligoendopeptidase f
PDUR_11020	COG1278	Cold shock
PDUR_11045	COG1937	Protein conserved in bacteria
PDUR_11050	COG0534	Mate efflux family protein
PDUR_11065	COG0513	Belongs to the DEAD box helicase family
PDUR_11080	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
PDUR_11085	COG0705	Rhomboid family
PDUR_11090	COG0583	DNA-binding transcription factor activity
PDUR_11095	COG2738	Putative neutral zinc metallopeptidase
PDUR_11105	COG0004	ammonium transporteR
PDUR_11125	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PDUR_11130	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PDUR_11135	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PDUR_11140	COG1141	Ferredoxin
PDUR_11145	COG1376	ErfK ybiS ycfS ynhG family protein
PDUR_11155	COG0167	dihydroorotate dehydrogenase activity
PDUR_11160	COG2357	RelA SpoT domain protein
PDUR_11165	COG1547	Domain of unknown function (DUF309)
PDUR_11170	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PDUR_11170	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
PDUR_11175	COG1187	pseudouridine synthase activity
PDUR_11180	COG0561	phosphatase activity
PDUR_11185	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
PDUR_11185	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PDUR_11190	COG0438	transferase activity, transferring glycosyl groups
PDUR_11200	COG4717	serine-type aminopeptidase activity
PDUR_11205	COG3949	Membrane
PDUR_11210	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PDUR_11260	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PDUR_11270	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
PDUR_11270	COG2070	2-Nitropropane dioxygenase
PDUR_11275	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
PDUR_11275	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_11275	COG3321	synthase
PDUR_11275	COG0300	oxidoreductase activity
PDUR_11275	COG0318	PFAM AMP-dependent synthetase and ligase
PDUR_11300	COG4221	oxidoreductase activity
PDUR_11300	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PDUR_11300	COG0300	oxidoreductase activity
PDUR_11300	COG3321	synthase
PDUR_11325	COG0745	RESPONSE REGULATOR receiver
PDUR_11330	COG2205	protein histidine kinase activity
PDUR_11350	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PDUR_11355	COG2814	Major facilitator Superfamily
PDUR_11360	COG1733	regulation of RNA biosynthetic process
PDUR_11380	COG0656	L-ascorbic acid biosynthetic process
PDUR_11400	COG0371	Dehydrogenase
PDUR_11405	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
PDUR_11425	COG2814	Major facilitator Superfamily
PDUR_11430	COG0640	Transcriptional regulator
PDUR_11440	COG0860	N-Acetylmuramoyl-L-alanine amidase
PDUR_11510	COG5646	InterPro IPR014922
PDUR_11515	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PDUR_11515	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
PDUR_11540	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
PDUR_11540	COG2070	2-Nitropropane dioxygenase
PDUR_11560	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PDUR_11560	COG3321	synthase
PDUR_11560	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
PDUR_11560	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
PDUR_11565	COG0534	Mate efflux family protein
PDUR_11600	COG2814	Major facilitator Superfamily
PDUR_11640	COG1132	(ABC) transporter
PDUR_11650	COG0667	Aldo Keto reductase
PDUR_11720	COG1175	transmembrane transport
PDUR_11740	COG2814	Major facilitator Superfamily
PDUR_11745	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_11750	COG1141	Ferredoxin
PDUR_11765	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
PDUR_11805	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
PDUR_11810	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
PDUR_11815	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PDUR_11820	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PDUR_11825	COG1910	domain protein
PDUR_11835	COG1120	ATPase activity
PDUR_11860	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
PDUR_11870	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PDUR_11875	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
PDUR_11885	COG0697	spore germination
PDUR_11890	COG0366	Alpha amylase catalytic
PDUR_11895	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PDUR_11895	COG1263	PTS System
PDUR_11900	COG2188	Transcriptional regulator
PDUR_11905	COG1132	(ABC) transporter
PDUR_11915	COG2247	cell wall binding repeat
PDUR_11915	COG2385	sporulation resulting in formation of a cellular spore
PDUR_11935	COG1131	(ABC) transporter
PDUR_11975	COG2731	YhcH YjgK YiaL family protein
PDUR_11980	COG2731	YhcH YjgK YiaL family protein
PDUR_11990	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_11995	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PDUR_12005	COG0745	RESPONSE REGULATOR receiver
PDUR_12010	COG5002	protein histidine kinase activity
PDUR_12020	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
PDUR_12025	COG1984	allophanate hydrolase subunit 2
PDUR_12030	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
PDUR_12050	COG2972	Histidine kinase
PDUR_12055	COG4753	response regulator
PDUR_12055	COG2207	Transcriptional regulator
PDUR_12060	COG1840	ABC-type Fe3 transport system, periplasmic component
PDUR_12065	COG3842	ATPase activity
PDUR_12095	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_12110	COG0180	Tryptophanyl-tRNA synthetase
PDUR_12125	COG0604	alcohol dehydrogenase
PDUR_12130	COG1309	transcriptional regulator
PDUR_12155	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
PDUR_12175	COG0583	DNA-binding transcription factor activity
PDUR_12180	COG1132	(ABC) transporter
PDUR_12185	COG1132	(ABC) transporter
PDUR_12210	COG0778	Nitroreductase
PDUR_12215	COG4166	transmembrane transport
PDUR_12230	COG0024	Methionine aminopeptidase
PDUR_12235	COG0442	prolyl-tRNA aminoacylation
PDUR_12245	COG1959	2 iron, 2 sulfur cluster binding
PDUR_12250	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PDUR_12270	COG2966	Psort location CytoplasmicMembrane, score
PDUR_12275	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PDUR_12285	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
PDUR_12290	COG0586	Pfam SNARE associated Golgi protein
PDUR_12295	COG1595	DNA-templated transcription, initiation
PDUR_12310	COG4753	response regulator
PDUR_12310	COG2207	Transcriptional regulator
PDUR_12315	COG3275	phosphorelay sensor kinase activity
PDUR_12380	COG1846	Transcriptional regulator
PDUR_12385	COG2814	Major facilitator Superfamily
PDUR_12395	COG0110	maltose O-acetyltransferase activity
PDUR_12440	COG0679	Auxin Efflux Carrier
PDUR_12450	COG2153	protein acetylation
PDUR_12475	COG1982	Orn Lys Arg decarboxylase major
PDUR_12485	COG4493	Belongs to the UPF0637 family
PDUR_12495	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
PDUR_12500	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
PDUR_12505	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PDUR_12510	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
PDUR_12515	COG1832	CoA-binding protein
PDUR_12525	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PDUR_12530	COG1376	ErfK ybiS ycfS ynhG family protein
PDUR_12535	COG1595	DNA-templated transcription, initiation
PDUR_12545	COG0693	protein deglycase activity
PDUR_12555	COG1609	Transcriptional regulator
PDUR_12565	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
PDUR_12575	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
PDUR_12580	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
PDUR_12585	COG2203	Gaf domain
PDUR_12585	COG2199	diguanylate cyclase activity
PDUR_12605	COG4838	Belongs to the UPF0358 family
PDUR_12610	COG0387	Pfam Sodium calcium exchanger
PDUR_12615	COG1302	Protein conserved in bacteria
PDUR_12620	COG0772	Belongs to the SEDS family
PDUR_12630	COG1473	amidohydrolase
PDUR_12635	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
PDUR_12640	COG1061	Type III restriction enzyme res subunit
PDUR_12670	COG0583	DNA-binding transcription factor activity
PDUR_12685	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
PDUR_12695	COG0697	spore germination
PDUR_12715	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
PDUR_12715	COG0646	methionine synthase
PDUR_12720	COG1561	YicC-like family, N-terminal region
PDUR_12725	COG2052	Domain of unknown function (DUF370)
PDUR_12730	COG0194	GDP metabolic process
PDUR_12735	COG1758	RNA polymerase activity
PDUR_12745	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
PDUR_12750	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
PDUR_12755	COG0242	peptide deformylase activity
PDUR_12760	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
PDUR_12765	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PDUR_12765	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PDUR_12770	COG0820	rRNA (adenine-C2-)-methyltransferase activity
PDUR_12775	COG0631	protein serine/threonine phosphatase activity
PDUR_12780	COG2815	serine threonine protein kinase
PDUR_12780	COG0515	serine threonine protein kinase
PDUR_12785	COG1162	GTPase activity
PDUR_12790	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
PDUR_12800	COG0227	Belongs to the bacterial ribosomal protein bL28 family
PDUR_12805	COG1461	Dihydroxyacetone kinase
PDUR_12810	COG1307	EDD domain protein, DegV family
PDUR_12815	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
PDUR_12830	COG0475	glutathione-regulated potassium exporter activity
PDUR_12835	COG0490	domain, Protein
PDUR_12860	COG4120	Belongs to the binding-protein-dependent transport system permease family
PDUR_12865	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PDUR_12865	COG1116	anion transmembrane transporter activity
PDUR_12870	COG1285	pathogenesis
PDUR_12875	COG2017	converts alpha-aldose to the beta-anomer
PDUR_12905	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PDUR_12915	COG2706	6-phosphogluconolactonase activity
PDUR_12920	COG1923	regulation of RNA biosynthetic process
PDUR_12925	COG0671	phosphoesterase, PA-phosphatase related
PDUR_12930	COG4129	membrane
PDUR_12935	COG3973	AAA domain
PDUR_12940	COG2814	Major facilitator Superfamily
PDUR_12945	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
PDUR_12965	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
PDUR_12980	COG1846	Transcriptional regulator
PDUR_12985	COG1033	growth of symbiont in host cell
PDUR_12985	COG2409	Drug exporters of the RND superfamily
PDUR_13015	COG3223	Belongs to the PsiE family
PDUR_13040	COG0352	thiamine-phosphate diphosphorylase activity
PDUR_13045	COG0351	phosphomethylpyrimidine kinase
PDUR_13050	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
PDUR_13055	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PDUR_13060	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_13065	COG1116	anion transmembrane transporter activity
PDUR_13075	COG1357	PFAM Pentapeptide repeats (8 copies)
PDUR_13080	COG0657	acetylesterase activity
PDUR_13095	COG2207	Transcriptional regulator
PDUR_13100	COG0735	belongs to the Fur family
PDUR_13105	COG2207	Transcriptional regulator
PDUR_13130	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
PDUR_13140	COG2182	Extracellular solute-binding protein
PDUR_13145	COG1175	transmembrane transport
PDUR_13150	COG3833	ABC-type maltose transport systems, permease component
PDUR_13160	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
PDUR_13175	COG0708	Exodeoxyribonuclease III
PDUR_13190	COG0840	transmembrane signaling receptor activity
PDUR_13220	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
PDUR_13225	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PDUR_13230	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PDUR_13235	COG0840	transmembrane signaling receptor activity
PDUR_13235	COG5278	phosphoserine phosphatase activity
PDUR_13245	COG2259	Doxx family
PDUR_13255	COG3384	dioxygenase
PDUR_13275	COG1454	alcohol dehydrogenase
PDUR_13285	COG2318	DinB family
PDUR_13300	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
PDUR_13315	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
PDUR_13325	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_13335	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_13355	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
PDUR_13365	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_13385	COG1979	alcohol dehydrogenase
PDUR_13395	COG2814	Major facilitator Superfamily
PDUR_13435	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
PDUR_13440	COG3707	response regulator
PDUR_13445	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
PDUR_13450	COG2146	nitrite reductase [NAD(P)H] activity
PDUR_13465	COG4430	Bacteriocin-protection, YdeI or OmpD-Associated
PDUR_13485	COG2135	peptidase activity
PDUR_13500	COG1215	transferase activity, transferring glycosyl groups
PDUR_13505	COG0742	ribosomal rna small subunit methyltransferase
PDUR_13510	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
PDUR_13520	COG3480	Lon protease (S16) C-terminal proteolytic domain
PDUR_13525	COG1323	Belongs to the UPF0348 family
PDUR_13535	COG0333	Belongs to the bacterial ribosomal protein bL32 family
PDUR_13540	COG1349	DNA-binding transcription factor activity
PDUR_13545	COG0416	fatty acid biosynthetic process
PDUR_13555	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
PDUR_13560	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_13565	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PDUR_13570	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PDUR_13575	COG0571	ribonuclease III activity
PDUR_13585	COG3383	formate dehydrogenase (NAD+) activity
PDUR_13590	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
PDUR_13600	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
PDUR_13605	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
PDUR_13610	COG1027	Aspartate ammonia-lyase
PDUR_13615	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
PDUR_13625	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
PDUR_13630	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
PDUR_13635	COG1196	nuclear chromosome segregation
PDUR_13640	COG0552	protein localization to endoplasmic reticulum
PDUR_13645	COG2308	Evidence 4 Homologs of previously reported genes of
PDUR_13660	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_13670	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PDUR_13675	COG1643	Atp-dependent helicase
PDUR_13690	COG3599	regulation of cell shape
PDUR_13705	COG2409	Drug exporters of the RND superfamily
PDUR_13725	COG2720	vancomycin resistance protein
PDUR_13740	COG0583	DNA-binding transcription factor activity
PDUR_13745	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
PDUR_13750	COG0573	inorganic phosphate transmembrane transporter activity
PDUR_13755	COG0581	inorganic phosphate transmembrane transporter activity
PDUR_13760	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
PDUR_13765	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PDUR_13770	COG1309	transcriptional regulator
PDUR_13785	COG2226	methyltransferase
PDUR_13790	COG2309	aminopeptidase activity
PDUR_13795	COG2309	aminopeptidase activity
PDUR_13805	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
PDUR_13825	COG1253	flavin adenine dinucleotide binding
PDUR_13835	COG0477	Major facilitator Superfamily
PDUR_13840	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
PDUR_13855	COG1201	RNA secondary structure unwinding
PDUR_13860	COG0701	Predicted permease
PDUR_13870	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
PDUR_13880	COG1486	melibiose metabolic process
PDUR_13890	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
PDUR_13900	COG2217	Heavy metal translocating P-type atpase
PDUR_13915	COG2814	Major facilitator Superfamily
PDUR_13925	COG1595	DNA-templated transcription, initiation
PDUR_13935	COG1131	(ABC) transporter
PDUR_13945	COG0641	radical SAM
PDUR_13950	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
PDUR_13955	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
PDUR_13960	COG0390	transport system, permease component
PDUR_13980	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PDUR_14000	COG4555	ABC transporter
PDUR_14020	COG2226	methyltransferase
PDUR_14025	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PDUR_14035	COG1819	glycosyl
PDUR_14040	COG1151	hydroxylamine reductase activity
PDUR_14075	COG2226	methyltransferase
PDUR_14095	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_14100	COG0250	Participates in transcription elongation, termination and antitermination
PDUR_14110	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PDUR_14120	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
PDUR_14120	COG2070	2-Nitropropane dioxygenase
PDUR_14125	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PDUR_14130	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PDUR_14135	COG3425	synthase
PDUR_14145	COG0577	efflux transmembrane transporter activity
PDUR_14145	COG1136	(ABC) transporter
PDUR_14150	COG1136	(ABC) transporter
PDUR_14150	COG0577	efflux transmembrane transporter activity
PDUR_14170	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PDUR_14170	COG3321	synthase
PDUR_14170	COG4221	oxidoreductase activity
PDUR_14170	COG0300	oxidoreductase activity
PDUR_14175	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_14175	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
PDUR_14175	COG3321	synthase
PDUR_14175	COG4221	oxidoreductase activity
PDUR_14190	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
PDUR_14190	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_14190	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PDUR_14190	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PDUR_14190	COG3321	synthase
PDUR_14210	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PDUR_14210	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PDUR_14210	COG3321	synthase
PDUR_14210	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
PDUR_14210	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_14215	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
PDUR_14235	COG5566	PFAM Mor transcription activator
PDUR_14240	COG2207	Transcriptional regulator
PDUR_14265	COG1309	transcriptional regulator
PDUR_14270	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
PDUR_14275	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
PDUR_14285	COG4974	Belongs to the 'phage' integrase family
PDUR_14295	COG3552	Protein containing von Willebrand factor type A (VWA) domain
PDUR_14305	COG0714	Associated with various cellular activities
PDUR_14325	COG2249	NAD(P)H dehydrogenase (quinone) activity
PDUR_14330	COG0640	Transcriptional regulator
PDUR_14335	COG0385	Bile acid
PDUR_14340	COG0504	CTP synthase activity
PDUR_14355	COG5566	PFAM Mor transcription activator
PDUR_14365	COG0488	(ABC) transporter
PDUR_14380	COG4129	membrane
PDUR_14390	COG4191	Histidine kinase
PDUR_14395	COG0784	Response regulator, receiver
PDUR_14405	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
PDUR_14410	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
PDUR_14420	COG1609	Transcriptional regulator
PDUR_14435	COG1595	DNA-templated transcription, initiation
PDUR_14455	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
PDUR_14475	COG2223	nitrite transmembrane transporter activity
PDUR_14480	COG0243	molybdopterin cofactor binding
PDUR_14495	COG1959	2 iron, 2 sulfur cluster binding
PDUR_14520	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PDUR_14535	COG5634	Uncharacterized conserved protein (DUF2278)
PDUR_14545	COG1957	nucleoside hydrolase
PDUR_14555	COG0604	alcohol dehydrogenase
PDUR_14560	COG1733	regulation of RNA biosynthetic process
PDUR_14575	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
PDUR_14580	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
PDUR_14610	COG1846	Transcriptional regulator
PDUR_14635	COG1917	Cupin 2, conserved barrel domain protein
PDUR_14635	COG2207	Transcriptional regulator
PDUR_14640	COG0697	spore germination
PDUR_14650	COG1418	mRNA catabolic process
PDUR_14655	COG5002	protein histidine kinase activity
PDUR_14660	COG0745	RESPONSE REGULATOR receiver
PDUR_14665	COG0577	efflux transmembrane transporter activity
PDUR_14665	COG1136	(ABC) transporter
PDUR_14670	COG1136	(ABC) transporter
PDUR_14675	COG1566	PFAM secretion protein HlyD family protein
PDUR_14690	COG1621	beta-fructofuranosidase activity
PDUR_14695	COG1621	beta-fructofuranosidase activity
PDUR_14700	COG1621	beta-fructofuranosidase activity
PDUR_14705	COG3711	transcriptional antiterminator
PDUR_14710	COG1263	PTS System
PDUR_14710	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PDUR_14795	COG0535	radical SAM domain protein
PDUR_14805	COG1368	sulfuric ester hydrolase activity
PDUR_14810	COG0402	S-adenosylhomocysteine deaminase activity
PDUR_14820	COG1228	amidohydrolase
PDUR_14830	COG2986	histidine ammonia-lyase
PDUR_14835	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
PDUR_14840	COG0546	phosphoglycolate phosphatase activity
PDUR_14850	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
PDUR_14855	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
PDUR_14880	COG1914	H( )-stimulated, divalent metal cation uptake system
PDUR_14885	COG2814	Major facilitator Superfamily
PDUR_14895	COG4977	sequence-specific DNA binding
PDUR_14900	COG0351	phosphomethylpyrimidine kinase
PDUR_14905	COG0516	GMP reductase activity
PDUR_14910	COG1691	(AIR) carboxylase
PDUR_14915	COG1606	tRNA processing
PDUR_14920	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
PDUR_14930	COG0789	Transcriptional regulator
PDUR_14935	COG3684	Belongs to the aldolase LacD family
PDUR_14945	COG1131	(ABC) transporter
PDUR_14950	COG1725	Transcriptional regulator
PDUR_14960	COG1408	metallophosphoesterase
PDUR_14965	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_14970	COG2249	NAD(P)H dehydrogenase (quinone) activity
PDUR_14975	COG1733	regulation of RNA biosynthetic process
PDUR_14980	COG2703	oxygen carrier activity
PDUR_14985	COG2271	Major facilitator Superfamily
PDUR_14995	COG1309	transcriptional regulator
PDUR_15005	COG2323	membrane
PDUR_15020	COG0477	Major facilitator Superfamily
PDUR_15035	COG0772	Belongs to the SEDS family
PDUR_15040	COG1695	Transcriptional regulator
PDUR_15055	COG1122	ATPase activity
PDUR_15065	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PDUR_15080	COG4555	ABC transporter
PDUR_15085	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
PDUR_15085	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
PDUR_15090	COG1733	regulation of RNA biosynthetic process
PDUR_15105	COG0577	efflux transmembrane transporter activity
PDUR_15110	COG4181	ATPase activity
PDUR_15120	COG0745	RESPONSE REGULATOR receiver
PDUR_15130	COG1136	(ABC) transporter
PDUR_15135	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PDUR_15145	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_15155	COG0720	synthase
PDUR_15160	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
PDUR_15165	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
PDUR_15180	COG0640	Transcriptional regulator
PDUR_15185	COG2814	Major facilitator Superfamily
PDUR_15210	COG0531	amino acid
PDUR_15215	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
PDUR_15225	COG1253	flavin adenine dinucleotide binding
PDUR_15235	COG3773	Cell wall hydrolase
PDUR_15265	COG4974	Belongs to the 'phage' integrase family
PDUR_15270	COG0583	DNA-binding transcription factor activity
PDUR_15305	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PDUR_15310	COG1404	Belongs to the peptidase S8 family
PDUR_15320	COG2378	regulation of single-species biofilm formation
PDUR_15335	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
PDUR_15350	COG2211	Major facilitator Superfamily
PDUR_15355	COG1733	regulation of RNA biosynthetic process
PDUR_15360	COG0656	L-ascorbic acid biosynthetic process
PDUR_15375	COG1309	transcriptional regulator
PDUR_15395	COG1763	Mo-molybdopterin cofactor biosynthetic process
PDUR_15400	COG0303	'Molybdopterin
PDUR_15410	COG1842	Phage shock protein A
PDUR_15425	COG0543	2 iron, 2 sulfur cluster binding
PDUR_15435	COG3584	3D domain protein
PDUR_15435	COG3583	domain protein
PDUR_15440	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
PDUR_15455	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PDUR_15495	COG1126	abc transporter atp-binding protein
PDUR_15500	COG0765	amino acid transport
PDUR_15505	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PDUR_15515	COG0297	glycogen (starch) synthase activity
PDUR_15525	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
PDUR_15540	COG5002	protein histidine kinase activity
PDUR_15545	COG0745	RESPONSE REGULATOR receiver
PDUR_15555	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
PDUR_15560	COG0640	Transcriptional regulator
PDUR_15570	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
PDUR_15575	COG0551	DNA topoisomerase type I activity
PDUR_15575	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
PDUR_15585	COG0442	prolyl-tRNA aminoacylation
PDUR_15590	COG0493	'glutamate synthase
PDUR_15595	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
PDUR_15630	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PDUR_15635	COG1564	THIamine pyrophosphokinase
PDUR_15640	COG0791	NLP P60 protein
PDUR_15650	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
PDUR_15655	COG0488	(ABC) transporter
PDUR_15660	COG2815	serine threonine protein kinase
PDUR_15660	COG0515	serine threonine protein kinase
PDUR_15665	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
PDUR_15685	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
PDUR_15695	COG0647	UMP catabolic process
PDUR_15700	COG1234	tRNA 3'-trailer cleavage
PDUR_15705	COG1410	methionine synthase
PDUR_15705	COG0646	methionine synthase
PDUR_15725	COG4224	UPF0291 protein
PDUR_15735	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
PDUR_15740	COG1376	ErfK ybiS ycfS ynhG family protein
PDUR_15750	COG0174	glutamine synthetase
PDUR_15755	COG0789	Transcriptional regulator
PDUR_15760	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
PDUR_15770	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
PDUR_15775	COG0464	growth
PDUR_15795	COG1923	regulation of RNA biosynthetic process
PDUR_15800	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
PDUR_15805	COG2136	Putative SAM-dependent methyltransferase
PDUR_15805	COG2521	methyltransferase
PDUR_15810	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
PDUR_15815	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
PDUR_15835	COG4129	membrane
PDUR_15840	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_15845	COG1116	anion transmembrane transporter activity
PDUR_15850	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PDUR_15905	COG0640	Transcriptional regulator
PDUR_15910	COG0492	ferredoxin-NADP+ reductase activity
PDUR_15915	COG2707	UPF0756 membrane protein
PDUR_15935	COG1132	(ABC) transporter
PDUR_15940	COG1132	(ABC) transporter
PDUR_15960	COG0523	cobalamin synthesis protein
PDUR_15965	COG0521	Mo-molybdopterin cofactor biosynthetic process
PDUR_15980	COG4555	ABC transporter
PDUR_15990	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
PDUR_15995	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
PDUR_16010	COG0674	pyruvate-flavodoxin oxidoreductase activity
PDUR_16020	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
PDUR_16025	COG1335	isochorismatase
PDUR_16050	COG0534	Mate efflux family protein
PDUR_16060	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
PDUR_16060	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
PDUR_16075	COG1960	acyl-CoA dehydrogenase activity
PDUR_16080	COG0367	asparagine synthase
PDUR_16110	COG2086	electron transfer activity
PDUR_16115	COG4550	Control of competence regulator ComK, YlbF/YmcA
PDUR_16120	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
PDUR_16125	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
PDUR_16135	COG2270	Major facilitator Superfamily
PDUR_16140	COG4869	propanediol catabolic process
PDUR_16150	COG2359	stage V sporulation protein S
PDUR_16155	COG1692	metallophosphoesterase
PDUR_16160	COG1418	mRNA catabolic process
PDUR_16170	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
PDUR_16180	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
PDUR_16185	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
PDUR_16200	COG1426	Protein conserved in bacteria
PDUR_16215	COG0300	oxidoreductase activity
PDUR_16220	COG0612	Peptidase, M16
PDUR_16225	COG0612	Peptidase, M16
PDUR_16230	COG3773	Cell wall hydrolase
PDUR_16230	COG3409	Peptidoglycan-binding domain 1 protein
PDUR_16240	COG4980	gas vesicle protein
PDUR_16240	COG1674	ftsk spoiiie
PDUR_16255	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
PDUR_16265	COG0527	aspartate kinase activity
PDUR_16270	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
PDUR_16275	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PDUR_16280	COG0756	dUTP diphosphatase activity
PDUR_16285	COG0612	Peptidase, M16
PDUR_16290	COG0726	polysaccharide deacetylase
PDUR_16295	COG1185	polyribonucleotide nucleotidyltransferase activity
PDUR_16300	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
PDUR_16305	COG0196	riboflavin kinase activity
PDUR_16310	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
PDUR_16315	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
PDUR_16320	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
PDUR_16325	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
PDUR_16330	COG1358	cellular component organization or biogenesis
PDUR_16335	COG2740	Nucleic-acid-binding protein implicated in transcription termination
PDUR_16340	COG0195	Participates in both transcription termination and antitermination
PDUR_16345	COG0779	Required for maturation of 30S ribosomal subunits
PDUR_16350	COG2207	Transcriptional regulator
PDUR_16355	COG0395	ABC-type sugar transport system, permease component
PDUR_16365	COG1653	transport
PDUR_16370	COG2972	Histidine kinase
PDUR_16375	COG2176	DNA-directed DNA polymerase activity
PDUR_16380	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
PDUR_16385	COG0750	zinc metalloprotease
PDUR_16390	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
PDUR_16395	COG4589	Belongs to the CDS family
PDUR_16400	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
PDUR_16405	COG0233	cytoplasmic translational termination
PDUR_16410	COG0528	UMP kinase activity
PDUR_16415	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
PDUR_16420	COG0052	Belongs to the universal ribosomal protein uS2 family
PDUR_16445	COG1191	sigma factor activity
PDUR_16455	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
PDUR_16460	COG1776	CheC inhibitor of MCP methylation
PDUR_16465	COG0835	chemotaxis
PDUR_16470	COG2198	Histidine kinase
PDUR_16470	COG0643	Histidine kinase
PDUR_16475	COG2201	protein-glutamate methylesterase activity
PDUR_16480	COG0455	bacterial-type flagellum organization
PDUR_16485	COG1419	protein localization to endoplasmic reticulum
PDUR_16490	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
PDUR_16495	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
PDUR_16500	COG1684	flagellar biosynthetic protein fliR
PDUR_16505	COG1987	bacterial-type flagellum assembly
PDUR_16510	COG1338	Plays a role in the flagellum-specific transport system
PDUR_16515	COG3190	flagellar
PDUR_16520	COG2201	protein-glutamate methylesterase activity
PDUR_16525	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
PDUR_16525	COG1776	CheC inhibitor of MCP methylation
PDUR_16530	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
PDUR_16545	COG4786	Flagellar basal body rod
PDUR_16555	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
PDUR_16570	COG2882	bacterial-type flagellum organization
PDUR_16575	COG1157	protein secretion by the type III secretion system
PDUR_16585	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
PDUR_16590	COG1766	The M ring may be actively involved in energy transduction
PDUR_16595	COG1677	Flagellar hook-basal body complex protein FliE
PDUR_16600	COG1558	bacterial-type flagellum-dependent cell motility
PDUR_16605	COG1815	bacterial-type flagellum-dependent cell motility
PDUR_16615	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
PDUR_16620	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
PDUR_16625	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
PDUR_16630	COG0758	DNA mediated transformation
PDUR_16630	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PDUR_16635	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
PDUR_16640	COG0045	succinate-CoA ligase (ADP-forming) activity
PDUR_16645	COG1846	Transcriptional regulator
PDUR_16650	COG0606	chelatase, subunit chli
PDUR_16665	COG0792	nuclease activity
PDUR_16680	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PDUR_16690	COG0681	Belongs to the peptidase S26 family
PDUR_16725	COG0336	Belongs to the RNA methyltransferase TrmD family
PDUR_16740	COG0228	four-way junction DNA binding
PDUR_16745	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
PDUR_16750	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
PDUR_16755	COG1272	protein, Hemolysin III
PDUR_16760	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
PDUR_16770	COG0288	reversible hydration of carbon dioxide
PDUR_16775	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
PDUR_16800	COG3976	FMN-binding domain protein
PDUR_16800	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
PDUR_16805	COG1331	Highly conserved protein containing a thioredoxin domain
PDUR_16810	COG0028	Belongs to the TPP enzyme family
PDUR_16845	COG1396	sequence-specific DNA binding
PDUR_16855	COG0596	Alpha beta hydrolase
PDUR_16885	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
PDUR_16905	COG1113	amino acid transport
PDUR_16910	COG2814	Major facilitator Superfamily
PDUR_16935	COG1522	sequence-specific DNA binding
PDUR_16940	COG1280	lysine exporter protein (LysE YggA)
PDUR_16945	COG1742	UPF0060 membrane protein
PDUR_16955	COG2848	UPF0210 protein
PDUR_16975	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_16985	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
PDUR_16985	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
PDUR_16990	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_16995	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_17010	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
PDUR_17015	COG2814	Major facilitator Superfamily
PDUR_17025	COG1664	Polymer-forming cytoskeletal
PDUR_17030	COG0789	Transcriptional regulator
PDUR_17035	COG1349	DNA-binding transcription factor activity
PDUR_17040	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
PDUR_17060	COG0716	FMN binding
PDUR_17065	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
PDUR_17065	COG0116	Belongs to the methyltransferase superfamily
PDUR_17070	COG0564	pseudouridine synthase activity
PDUR_17080	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PDUR_17085	COG0187	DNA topoisomerase II activity
PDUR_17095	COG1131	(ABC) transporter
PDUR_17110	COG2340	Cysteine-rich secretory protein family
PDUR_17140	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
PDUR_17150	COG0840	transmembrane signaling receptor activity
PDUR_17160	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
PDUR_17175	COG0860	N-Acetylmuramoyl-L-alanine amidase
PDUR_17180	COG2247	cell wall binding repeat
PDUR_17180	COG0860	N-Acetylmuramoyl-L-alanine amidase
PDUR_17185	COG0066	3-isopropylmalate dehydratase activity
PDUR_17190	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
PDUR_17200	COG0583	DNA-binding transcription factor activity
PDUR_17210	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
PDUR_17215	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
PDUR_17225	COG3935	DnaD domain protein
PDUR_17230	COG0017	Asparaginyl-tRNA synthetase
PDUR_17235	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
PDUR_17240	COG1250	3-hydroxyacyl-CoA dehydrogenase
PDUR_17265	COG0402	S-adenosylhomocysteine deaminase activity
PDUR_17270	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
PDUR_17275	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
PDUR_17275	COG1199	ATP-dependent helicase activity
PDUR_17290	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
PDUR_17310	COG0438	transferase activity, transferring glycosyl groups
PDUR_17315	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
PDUR_17320	COG1803	Methylglyoxal synthase
PDUR_17325	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
PDUR_17335	COG1694	Mazg nucleotide pyrophosphohydrolase
PDUR_17340	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
PDUR_17350	COG4347	Protein of unknown function (DUF1405)
PDUR_17360	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
PDUR_17390	COG0406	alpha-ribazole phosphatase activity
PDUR_17405	COG0287	Prephenate dehydrogenase
PDUR_17410	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
PDUR_17415	COG0159	tryptophan synthase activity
PDUR_17425	COG0135	phosphoribosylanthranilate isomerase activity
PDUR_17430	COG0134	indole-3-glycerol-phosphate synthase activity
PDUR_17435	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
PDUR_17445	COG4401	Chorismate mutase type I
PDUR_17450	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
PDUR_17455	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
PDUR_17465	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
PDUR_17470	COG0105	UTP biosynthetic process
PDUR_17490	COG0109	protoheme IX farnesyltransferase activity
PDUR_17495	COG2226	methyltransferase
PDUR_17515	COG0776	regulation of translation
PDUR_17525	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
PDUR_17560	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
PDUR_17565	COG1160	GTP binding
PDUR_17570	COG0539	negative regulation of cytoplasmic translation
PDUR_17575	COG0204	Acyl-transferase
PDUR_17590	COG2959	enzyme of heme biosynthesis
PDUR_17600	COG2339	peptidase activity
PDUR_17605	COG4862	establishment of competence for transformation
PDUR_17635	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PDUR_17640	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_17660	COG5002	protein histidine kinase activity
PDUR_17660	COG5002	protein histidine kinase activity
PDUR_17665	COG0745	RESPONSE REGULATOR receiver
PDUR_17670	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PDUR_17675	COG1333	cytochrome c biogenesis protein
PDUR_17680	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PDUR_17685	COG1187	pseudouridine synthase activity
PDUR_17695	COG0700	Nucleoside recognition
PDUR_17700	COG2715	membrane protein required for spore maturation
PDUR_17705	COG1686	Belongs to the peptidase S11 family
PDUR_17710	COG3874	Sporulation protein YtfJ
PDUR_17720	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
PDUR_17725	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
PDUR_17730	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
PDUR_17735	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
PDUR_17735	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
PDUR_17740	COG0307	riboflavin synthase, alpha
PDUR_17745	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PDUR_17745	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PDUR_17755	COG0312	modulator of DNA gyrase
PDUR_17765	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PDUR_17770	COG0019	diaminopimelate decarboxylase activity
PDUR_17800	COG2272	Belongs to the type-B carboxylesterase lipase family
PDUR_17805	COG0628	permease
PDUR_17840	COG1528	Iron-storage protein
PDUR_17860	COG2172	sigma factor antagonist activity
PDUR_17865	COG1366	Belongs to the anti-sigma-factor antagonist family
PDUR_17870	COG1686	Belongs to the peptidase S11 family
PDUR_17885	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
PDUR_17895	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
PDUR_17900	COG4974	Belongs to the 'phage' integrase family
PDUR_17910	COG0735	belongs to the Fur family
PDUR_17915	COG1300	Membrane
PDUR_17920	COG1379	DNA repair
PDUR_17935	COG2195	Cleaves the N-terminal amino acid of tripeptides
PDUR_17945	COG0321	lipoyl(octanoyl) transferase activity
PDUR_17950	COG0508	dehydrogenase complex catalyzes the overall conversion of
PDUR_17960	COG0022	dehydrogenase e1 component
PDUR_17965	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
PDUR_17970	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PDUR_18000	COG1435	thymidine kinase activity
PDUR_18020	COG3833	ABC-type maltose transport systems, permease component
PDUR_18025	COG1175	transmembrane transport
PDUR_18030	COG2182	Extracellular solute-binding protein
PDUR_18035	COG1609	Transcriptional regulator
PDUR_18080	COG4974	Belongs to the 'phage' integrase family
PDUR_18110	COG1388	LysM domain
PDUR_18110	COG3409	Peptidoglycan-binding domain 1 protein
PDUR_18110	COG5632	N-Acetylmuramoyl-L-alanine amidase
PDUR_18335	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
PDUR_18340	COG0745	RESPONSE REGULATOR receiver
PDUR_18345	COG0750	zinc metalloprotease
PDUR_18350	COG0497	DNA recombination
PDUR_18355	COG1438	arginine binding
PDUR_18365	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
PDUR_18370	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
PDUR_18380	COG1722	exodeoxyribonuclease VII activity
PDUR_18385	COG1570	exodeoxyribonuclease VII activity
PDUR_18390	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
PDUR_18410	COG1302	Protein conserved in bacteria
PDUR_18415	COG0439	Biotin carboxylase
PDUR_18420	COG0511	ligase activity, forming carbon-carbon bonds
PDUR_18460	COG3854	ATPases associated with a variety of cellular activities
PDUR_18470	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
PDUR_18480	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PDUR_18485	COG0006	proline dipeptidase activity
PDUR_18495	COG3872	metal-dependent enzyme
PDUR_18505	COG1752	Esterase of the alpha-beta hydrolase superfamily
PDUR_18510	COG1649	PFAM Uncharacterised BCR, COG1649
PDUR_18515	COG1321	iron dependent repressor
PDUR_18520	COG0785	Cytochrome C biogenesis protein
PDUR_18525	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PDUR_18530	COG1121	(ABC) transporter
PDUR_18540	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PDUR_18540	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PDUR_18545	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
PDUR_18550	COG0735	belongs to the Fur family
PDUR_18565	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
PDUR_18575	COG1012	belongs to the aldehyde dehydrogenase family
PDUR_18575	COG1454	alcohol dehydrogenase
PDUR_18580	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PDUR_18585	COG2116	formate transmembrane transporter activity
PDUR_18590	COG2146	nitrite reductase [NAD(P)H] activity
PDUR_18595	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
PDUR_18615	COG1819	glycosyl
PDUR_18620	COG1819	glycosyl
PDUR_18625	COG1733	regulation of RNA biosynthetic process
PDUR_18640	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PDUR_18640	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PDUR_18655	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
PDUR_18660	COG1968	undecaprenyl-diphosphatase activity
PDUR_18665	COG2815	serine threonine protein kinase
PDUR_18665	COG0515	serine threonine protein kinase
PDUR_18675	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
PDUR_18690	COG0628	permease
PDUR_18700	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
PDUR_18705	COG0328	RNA-DNA hybrid ribonuclease activity
PDUR_18705	COG3341	Caulimovirus viroplasmin
PDUR_18770	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PDUR_18785	COG0277	FAD linked oxidase domain protein
PDUR_18790	COG2011	ABC-type metal ion transport system permease component
PDUR_18795	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
PDUR_18805	COG0436	Aminotransferase
PDUR_18815	COG0456	acetyltransferase
PDUR_18820	COG0667	Aldo Keto reductase
PDUR_18835	COG0534	Mate efflux family protein
PDUR_18850	COG0246	Mannitol dehydrogenase
PDUR_18855	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
PDUR_18890	COG0298	carbon dioxide binding
PDUR_18895	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
PDUR_18900	COG0805	protein transport
PDUR_18905	COG0805	protein transport
PDUR_18915	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
PDUR_18920	COG0375	protein maturation
PDUR_18925	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
PDUR_18975	COG2323	membrane
PDUR_18985	COG2323	membrane
PDUR_19015	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
PDUR_19035	COG0662	Cupin 2, conserved barrel domain protein
PDUR_19095	COG3209	COG3209 Rhs family protein
PDUR_19095	COG4104	PAAR repeat-containing protein
PDUR_19145	COG1192	Involved in chromosome partitioning
PDUR_19150	COG1475	DNA binding
PDUR_19185	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
PDUR_19270	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
PDUR_19410	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
PDUR_19475	COG3344	reverse transcriptase
PDUR_19565	COG3209	COG3209 Rhs family protein
PDUR_19600	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
PDUR_19605	COG0735	belongs to the Fur family
PDUR_19610	COG0803	Belongs to the bacterial solute-binding protein 9 family
PDUR_19615	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PDUR_19620	COG1121	(ABC) transporter
PDUR_19625	COG0523	cobalamin synthesis protein
PDUR_19660	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
PDUR_19665	COG0284	orotidine-5'-phosphate decarboxylase activity
PDUR_19670	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
PDUR_19680	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
PDUR_19685	COG0540	Belongs to the ATCase OTCase family
PDUR_19695	COG0436	Aminotransferase
PDUR_19700	COG0564	pseudouridine synthase activity
PDUR_19705	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
PDUR_19710	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
PDUR_19715	COG0028	Belongs to the TPP enzyme family
PDUR_19745	COG3599	regulation of cell shape
PDUR_19750	COG2302	S4 RNA-binding domain
PDUR_19755	COG0762	integral membrane protein
PDUR_19760	COG1799	cell septum assembly
PDUR_19765	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
PDUR_19775	COG1873	PFAM PRC-barrel domain
PDUR_19780	COG1191	sigma factor activity
PDUR_19785	COG1191	sigma factor activity
PDUR_19795	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
PDUR_19800	COG0849	cell division
PDUR_19805	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
PDUR_19810	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PDUR_19815	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
PDUR_19820	COG0772	Belongs to the SEDS family
PDUR_19825	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
PDUR_19830	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
PDUR_19835	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
PDUR_19840	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
PDUR_19845	COG0768	penicillin binding
PDUR_19860	COG0275	rRNA processing
PDUR_19865	COG2001	Belongs to the MraZ family
PDUR_19875	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
PDUR_19880	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
PDUR_19885	COG4608	Belongs to the ABC transporter superfamily
PDUR_19890	COG0444	Belongs to the ABC transporter superfamily
PDUR_19895	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PDUR_19900	COG0601	transmembrane transport
PDUR_19905	COG4166	transmembrane transport
PDUR_19915	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
PDUR_19945	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
PDUR_19960	COG1316	TRANSCRIPTIONal
PDUR_19980	COG0861	Integral membrane protein TerC family
PDUR_19985	COG0301	tRNA thio-modification
PDUR_19990	COG1104	cysteine desulfurase activity
PDUR_19995	COG0741	lytic transglycosylase activity
PDUR_20020	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PDUR_20025	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PDUR_20035	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
PDUR_20040	COG2384	SAM-dependent methyltransferase
PDUR_20055	COG0358	DNA primase activity
PDUR_20060	COG1671	Belongs to the UPF0178 family
PDUR_20065	COG0751	glycine-tRNA ligase activity
PDUR_20070	COG0752	glycyl-tRNA synthetase alpha subunit
PDUR_20075	COG1381	Involved in DNA repair and RecF pathway recombination
PDUR_20085	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
PDUR_20095	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
PDUR_20100	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
PDUR_20105	COG1480	7TM receptor with intracellular HD hydrolase
PDUR_20110	COG1702	phosphate starvation-inducible protein PhoH
PDUR_20130	COG4864	UPF0365 protein
PDUR_20135	COG1030	water channel activity
PDUR_20140	COG1610	YqeY-like protein
PDUR_20145	COG0828	Belongs to the bacterial ribosomal protein bS21 family
PDUR_20150	COG0537	adenosine 5'-monophosphoramidase activity
PDUR_20155	COG0419	ATPase involved in DNA repair
PDUR_20160	COG0420	3'-5' exonuclease activity
PDUR_20165	COG1074	ATP-dependent DNA helicase activity
PDUR_20170	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
PDUR_20180	COG1283	sodium-dependent phosphate transmembrane transporter activity
PDUR_20190	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
PDUR_20195	COG1385	rRNA (uridine-N3-)-methyltransferase activity
PDUR_20200	COG1994	Peptidase M50
PDUR_20205	COG2264	protein methyltransferase activity
PDUR_20210	COG1917	Cupin 2, conserved barrel domain protein
PDUR_20210	COG2207	Transcriptional regulator
PDUR_20220	COG1175	transmembrane transport
PDUR_20230	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PDUR_20245	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
PDUR_20250	COG2818	Glycosylase
PDUR_20265	COG1595	DNA-templated transcription, initiation
PDUR_20285	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PDUR_20285	COG1263	PTS System
PDUR_20285	COG2190	(PTS) system
PDUR_20290	COG1621	beta-fructofuranosidase activity
PDUR_20295	COG1609	Transcriptional regulator
PDUR_20305	COG0443	Heat shock 70 kDa protein
PDUR_20315	COG1420	regulation of RNA biosynthetic process
PDUR_20320	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
PDUR_20325	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
PDUR_20325	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
PDUR_20330	COG0635	Involved in the biosynthesis of porphyrin-containing compound
PDUR_20335	COG0481	GTPase activity
PDUR_20355	COG0268	Binds directly to 16S ribosomal RNA
PDUR_20360	COG1309	transcriptional regulator
PDUR_20370	COG1466	dna polymerase III delta subunit
PDUR_20380	COG1595	DNA-templated transcription, initiation
PDUR_20410	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PDUR_20415	COG1609	Transcriptional regulator
PDUR_20425	COG1595	DNA-templated transcription, initiation
PDUR_20445	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_20450	COG2207	Transcriptional regulator
PDUR_20465	COG0658	competence protein
PDUR_20465	COG2333	competence protein COMEC
PDUR_20480	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
PDUR_20485	COG0495	leucyl-tRNA aminoacylation
PDUR_20495	COG0628	permease
PDUR_20510	COG1104	cysteine desulfurase activity
PDUR_20520	COG1959	2 iron, 2 sulfur cluster binding
PDUR_20525	COG0482	sulfurtransferase activity
PDUR_20530	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
PDUR_20545	COG0596	Alpha beta hydrolase
PDUR_20550	COG3973	AAA domain
PDUR_20555	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
PDUR_20560	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
PDUR_20565	COG0124	histidyl-tRNA synthetase
PDUR_20585	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PDUR_20590	COG2233	PERMEase
PDUR_20595	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PDUR_20600	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
PDUR_20600	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
PDUR_20615	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
PDUR_20615	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
PDUR_20625	COG2244	polysaccharide biosynthetic process
PDUR_20630	COG2323	membrane
PDUR_20645	COG1131	(ABC) transporter
PDUR_20655	COG1862	Preprotein translocase
PDUR_20665	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
PDUR_20670	COG2385	sporulation resulting in formation of a cellular spore
PDUR_20675	COG2255	four-way junction helicase activity
PDUR_20680	COG0632	four-way junction helicase activity
PDUR_20685	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
PDUR_20735	COG0791	NLP P60 protein
PDUR_20735	COG1388	LysM domain
PDUR_20740	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
PDUR_20745	COG0077	Prephenate dehydratase
PDUR_20750	COG0083	homoserine kinase activity
PDUR_20755	COG0460	homoserine dehydrogenase
PDUR_20760	COG4492	Belongs to the UPF0735 family
PDUR_20770	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
PDUR_20780	COG0211	Belongs to the bacterial ribosomal protein bL27 family
PDUR_20785	COG2868	ribosomal protein
PDUR_20795	COG1530	ribonuclease E activity
PDUR_20800	COG1994	Peptidase M50
PDUR_20810	COG2894	cell division
PDUR_20815	COG0850	regulation of cytokinetic process
PDUR_20825	COG1792	Involved in formation and maintenance of cell shape
PDUR_20830	COG1077	Cell shape determining protein MreB Mrl
PDUR_20835	COG2003	Belongs to the UPF0758 family
PDUR_20860	COG3706	GGDEF domain
PDUR_20865	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
PDUR_20870	COG0285	dihydrofolate synthase activity
PDUR_20875	COG0525	valine-tRNA ligase activity
PDUR_20895	COG1388	LysM domain
PDUR_20900	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
PDUR_20905	COG0564	pseudouridine synthase activity
PDUR_20910	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
PDUR_20915	COG0113	porphobilinogen synthase activity
PDUR_20920	COG0667	Aldo Keto reductase
PDUR_20940	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
PDUR_20940	COG1648	precorrin-2 dehydrogenase activity
PDUR_20945	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PDUR_20955	COG0218	Necessary for normal cell division and for the maintenance of normal septation
PDUR_20965	COG1067	ATP-dependent peptidase activity
PDUR_20965	COG0470	DNA polymerase III
PDUR_20970	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
PDUR_20975	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
PDUR_20980	COG0740	serine-type endopeptidase activity
PDUR_20985	COG0544	peptidyl-prolyl cis-trans isomerase activity
PDUR_21000	COG0581	inorganic phosphate transmembrane transporter activity
PDUR_21005	COG0573	inorganic phosphate transmembrane transporter activity
PDUR_21010	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
PDUR_21020	COG1131	(ABC) transporter
PDUR_21025	COG1511	domain protein
PDUR_21025	COG0842	Transport permease protein
PDUR_21030	COG1309	transcriptional regulator
PDUR_21040	COG0018	arginyl-trna synthetase
PDUR_21050	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
PDUR_21065	COG0367	asparagine synthase
PDUR_21075	COG0656	L-ascorbic acid biosynthetic process
PDUR_21095	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
PDUR_21100	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
PDUR_21120	COG2226	methyltransferase
PDUR_21145	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
PDUR_21150	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
PDUR_21165	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
PDUR_21175	COG0861	Integral membrane protein TerC family
PDUR_21180	COG0820	rRNA (adenine-C2-)-methyltransferase activity
PDUR_21190	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_21220	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PDUR_21220	COG1263	PTS System
PDUR_21220	COG2190	(PTS) system
PDUR_21260	COG1486	melibiose metabolic process
PDUR_21265	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PDUR_21265	COG1263	PTS System
PDUR_21270	COG2197	response regulator
PDUR_21275	COG2508	Transcriptional regulator
PDUR_21280	COG1301	dicarboxylic acid transport
PDUR_21290	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PDUR_21315	COG1737	Transcriptional regulator
PDUR_21320	COG0363	glucosamine-6-phosphate deaminase activity
PDUR_21325	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
PDUR_21335	COG1216	Glycosyl transferase, family 2
PDUR_21350	COG1086	Polysaccharide biosynthesis protein
PDUR_21360	COG0438	transferase activity, transferring glycosyl groups
PDUR_21440	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PDUR_21455	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
PDUR_21460	COG1216	Glycosyl transferase, family 2
PDUR_21470	COG1216	Glycosyl transferase, family 2
PDUR_21480	COG1368	sulfuric ester hydrolase activity
PDUR_21485	COG1929	Belongs to the glycerate kinase type-1 family
PDUR_21505	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PDUR_21515	COG0402	S-adenosylhomocysteine deaminase activity
PDUR_21525	COG1247	-acetyltransferase
PDUR_21560	COG1136	(ABC) transporter
PDUR_21610	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
PDUR_21615	COG0463	Glycosyl transferase, family 2
PDUR_21625	COG0463	Glycosyl transferase, family 2
PDUR_21635	COG0189	ligase activity
PDUR_21640	COG0688	phosphatidylethanolamine metabolic process
PDUR_21645	COG0588	phosphoglycerate mutase activity
PDUR_21795	COG0484	heat shock protein binding
PDUR_21835	COG0500	methyltransferase
PDUR_21855	COG1131	(ABC) transporter
PDUR_21860	COG0513	Belongs to the DEAD box helicase family
PDUR_21865	COG0300	oxidoreductase activity
PDUR_21875	COG0583	DNA-binding transcription factor activity
PDUR_21890	COG0693	protein deglycase activity
PDUR_21900	COG1408	metallophosphoesterase
PDUR_21915	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
PDUR_21920	COG1053	succinate dehydrogenase
PDUR_21925	COG2009	succinate dehydrogenase
PDUR_21930	COG0583	DNA-binding transcription factor activity
PDUR_21935	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
PDUR_21940	COG0569	domain protein
PDUR_21945	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
PDUR_21955	COG0322	excinuclease ABC activity
PDUR_21965	COG3118	belongs to the thioredoxin family
PDUR_21975	COG1484	DNA-dependent DNA replication
PDUR_22000	COG1252	NADH dehydrogenase
PDUR_22005	COG0492	ferredoxin-NADP+ reductase activity
PDUR_22010	COG0189	ligase activity
PDUR_22020	COG1733	regulation of RNA biosynthetic process
PDUR_22040	COG3693	PFAM glycoside hydrolase, family 10
PDUR_22055	COG4753	response regulator
PDUR_22055	COG2207	Transcriptional regulator
PDUR_22060	COG2972	Histidine kinase
PDUR_22220	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PDUR_22245	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PDUR_22260	COG0316	Belongs to the HesB IscA family
PDUR_22270	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
PDUR_22275	COG1252	NADH dehydrogenase
PDUR_22280	COG4844	belongs to the
PDUR_22285	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
PDUR_22295	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
PDUR_22300	COG1612	heme a metabolic process
PDUR_22305	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PDUR_22315	COG2839	Protein conserved in bacteria
PDUR_22350	COG3693	PFAM glycoside hydrolase, family 10
PDUR_22370	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
PDUR_22380	COG0109	protoheme IX farnesyltransferase activity
PDUR_22385	COG1988	membrane-bound metal-dependent
PDUR_22395	COG0180	Tryptophanyl-tRNA synthetase
PDUR_22400	COG2017	converts alpha-aldose to the beta-anomer
PDUR_22420	COG3093	addiction module antidote protein HigA
PDUR_22435	COG2346	COG2346, Truncated hemoglobins
PDUR_22445	COG3314	Sporulation integral membrane protein YlbJ
PDUR_22450	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
PDUR_22470	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
PDUR_22485	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PDUR_22490	COG0508	dehydrogenase complex catalyzes the overall conversion of
PDUR_22495	COG0022	dehydrogenase e1 component
PDUR_22500	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
PDUR_22520	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_22535	COG2205	protein histidine kinase activity
PDUR_22545	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
PDUR_22550	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
PDUR_22625	COG0517	IMP dehydrogenase activity
PDUR_22625	COG4175	Glycine betaine
PDUR_22630	COG1510	regulation of RNA biosynthetic process
PDUR_22635	COG1846	Transcriptional regulator
PDUR_22640	COG2153	protein acetylation
PDUR_22655	COG1910	domain protein
PDUR_22660	COG0791	NLP P60 protein
PDUR_22660	COG1388	LysM domain
PDUR_22665	COG1840	ABC-type Fe3 transport system, periplasmic component
PDUR_22675	COG3842	ATPase activity
PDUR_22690	COG0371	Dehydrogenase
PDUR_22700	COG5002	protein histidine kinase activity
PDUR_22705	COG0745	RESPONSE REGULATOR receiver
PDUR_22765	COG1621	beta-fructofuranosidase activity
PDUR_22810	COG0395	ABC-type sugar transport system, permease component
PDUR_22815	COG4209	transmembrane transport
PDUR_22825	COG1177	transmembrane transport
PDUR_22835	COG3842	ATPase activity
PDUR_22845	COG1063	alcohol dehydrogenase
PDUR_22850	COG4948	Mandelate Racemase Muconate Lactonizing
PDUR_22855	COG1802	Transcriptional regulator
PDUR_22900	COG0820	rRNA (adenine-C2-)-methyltransferase activity
PDUR_22915	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_22920	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_22925	COG1309	transcriptional regulator
PDUR_22930	COG1012	belongs to the aldehyde dehydrogenase family
PDUR_22935	COG4221	oxidoreductase activity
PDUR_22940	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PDUR_22945	COG0569	domain protein
PDUR_22955	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
PDUR_22960	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
PDUR_22970	COG2197	response regulator
PDUR_22975	COG4585	Histidine kinase
PDUR_22985	COG1842	Phage shock protein A
PDUR_23005	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
PDUR_23010	COG0535	radical SAM domain protein
PDUR_23010	COG1433	Dinitrogenase iron-molybdenum cofactor
PDUR_23030	COG1414	Transcriptional regulator
PDUR_23155	COG3858	chitin binding
PDUR_23160	COG0735	belongs to the Fur family
PDUR_23170	COG0456	acetyltransferase
PDUR_23170	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
PDUR_23175	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PDUR_23180	COG0154	amidase activity
PDUR_23185	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PDUR_23195	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
PDUR_23200	COG1131	(ABC) transporter
PDUR_23220	COG1595	DNA-templated transcription, initiation
PDUR_23230	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PDUR_23240	COG0586	Pfam SNARE associated Golgi protein
PDUR_23245	COG0640	Transcriptional regulator
PDUR_23275	COG0384	phenazine biosynthesis protein PhzF
PDUR_23295	COG4840	Belongs to the UPF0435 family
PDUR_23315	COG1191	sigma factor activity
PDUR_23335	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
PDUR_23340	COG2208	phosphoserine phosphatase activity
PDUR_23355	COG0791	NLP P60 protein
PDUR_23360	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
PDUR_23375	COG0488	(ABC) transporter
PDUR_23380	COG1413	lyase activity
PDUR_23405	COG2217	Heavy metal translocating P-type atpase
PDUR_23425	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
PDUR_23430	COG0330	HflC and HflK could
PDUR_23440	COG1605	Chorismate mutase
PDUR_23440	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
PDUR_23445	COG1280	lysine exporter protein (LysE YggA)
PDUR_23450	COG1113	amino acid transport
PDUR_23455	COG2199	diguanylate cyclase activity
PDUR_23460	COG2197	response regulator
PDUR_23480	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
PDUR_23495	COG0179	Fumarylacetoacetate (FAA) hydrolase
PDUR_23500	COG0561	phosphatase activity
PDUR_23510	COG0860	N-Acetylmuramoyl-L-alanine amidase
PDUR_23530	COG0697	spore germination
PDUR_23640	COG3209	COG3209 Rhs family protein
PDUR_23685	COG3209	COG3209 Rhs family protein
PDUR_23695	COG0667	Aldo Keto reductase
PDUR_23700	COG0789	Transcriptional regulator
PDUR_23715	COG1309	transcriptional regulator
PDUR_23720	COG3631	Ketosteroid isomerase-related protein
PDUR_23740	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PDUR_23745	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
PDUR_23750	COG0640	Transcriptional regulator
PDUR_23755	COG0640	Transcriptional regulator
PDUR_23760	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PDUR_23770	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
PDUR_23775	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_23780	COG0006	proline dipeptidase activity
PDUR_23800	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PDUR_23855	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
PDUR_23860	COG1320	monovalent cation:proton antiporter activity
PDUR_23870	COG1863	multisubunit Na H antiporter MnhE subunit
PDUR_23875	COG0651	ATP synthesis coupled electron transport
PDUR_23880	COG1006	Multisubunit Na H antiporter MnhC subunit
PDUR_23920	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
PDUR_23925	COG1388	LysM domain
PDUR_23960	COG0436	Aminotransferase
PDUR_23970	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
PDUR_24000	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
PDUR_24010	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PDUR_24020	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
PDUR_24025	COG5662	AntiSigma factor
PDUR_24030	COG1595	DNA-templated transcription, initiation
PDUR_24035	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
PDUR_24040	COG1876	peptidase activity
PDUR_24080	COG3299	homolog of phage Mu protein gp47
PDUR_24150	COG1396	sequence-specific DNA binding
PDUR_24255	COG0726	polysaccharide deacetylase
PDUR_24260	COG2326	polyphosphate kinase activity
PDUR_24275	COG0489	protein tyrosine kinase activity
PDUR_24280	COG0860	N-Acetylmuramoyl-L-alanine amidase
PDUR_24290	COG0175	sulfate reduction
PDUR_24295	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
PDUR_24300	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
PDUR_24305	COG0101	tRNA pseudouridine synthase activity
PDUR_24310	COG0203	ribosomal protein L17
PDUR_24315	COG0202	RNA polymerase activity
PDUR_24320	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
PDUR_24325	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
PDUR_24330	COG0257	Belongs to the bacterial ribosomal protein bL36 family
PDUR_24335	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
PDUR_24340	COG2163	COG2163 Ribosomal protein L14E L6E L27E
PDUR_24345	COG0024	Methionine aminopeptidase
PDUR_24350	COG0563	adenylate kinase activity
PDUR_24355	COG0201	protein transport
PDUR_24360	COG0200	Binds to the 23S rRNA
PDUR_24365	COG1841	ribosomal large subunit assembly
PDUR_24370	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
PDUR_24375	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
PDUR_24380	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
PDUR_24385	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
PDUR_24390	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
PDUR_24395	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
PDUR_24400	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
PDUR_24405	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
PDUR_24410	COG0255	Belongs to the universal ribosomal protein uL29 family
PDUR_24415	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
PDUR_24420	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
PDUR_24425	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
PDUR_24430	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
PDUR_24435	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
PDUR_24440	COG0089	rRNA binding
PDUR_24445	COG0088	Forms part of the polypeptide exit tunnel
PDUR_24450	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
PDUR_24455	COG0051	transcription antitermination factor activity, RNA binding
PDUR_24460	COG0840	transmembrane signaling receptor activity
PDUR_24465	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
PDUR_24470	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
PDUR_24475	COG0049	tRNA binding
PDUR_24480	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
PDUR_24485	COG1358	cellular component organization or biogenesis
PDUR_24490	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PDUR_24495	COG0085	RNA polymerase activity
PDUR_24500	COG2813	Specifically methylates the guanine in position
PDUR_24505	COG0222	ribosome binding
PDUR_24510	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
PDUR_24515	COG0081	regulation of translation
PDUR_24520	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
PDUR_24525	COG0250	Participates in transcription elongation, termination and antitermination
PDUR_24530	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
PDUR_24540	COG3688	RNA-binding protein containing a PIN domain
PDUR_24545	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PDUR_24550	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
PDUR_24560	COG1045	serine acetyltransferase
PDUR_24565	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PDUR_24570	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
PDUR_24575	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
PDUR_24580	COG4956	integral membrane protein (PIN domain superfamily)
PDUR_24590	COG1183	phosphatidylcholine synthase activity
PDUR_24595	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
PDUR_24600	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
PDUR_24605	COG0542	response to heat
PDUR_24610	COG3869	Catalyzes the specific phosphorylation of arginine residues in
PDUR_24615	COG3880	PFAM UvrB UvrC protein
PDUR_24635	COG2182	Extracellular solute-binding protein
PDUR_24640	COG1175	transmembrane transport
PDUR_24645	COG3833	ABC-type maltose transport systems, permease component
PDUR_24650	COG1609	Transcriptional regulator
PDUR_24685	COG2223	nitrite transmembrane transporter activity
PDUR_24690	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
PDUR_24710	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
PDUR_24725	COG1136	(ABC) transporter
PDUR_24730	COG1785	Belongs to the alkaline phosphatase family
PDUR_24740	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PDUR_24745	COG0210	DNA helicase
PDUR_24750	COG1646	35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales
PDUR_24755	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
PDUR_24775	COG0785	Cytochrome C biogenesis protein
PDUR_24800	COG1131	(ABC) transporter
PDUR_24835	COG0463	Glycosyl transferase, family 2
PDUR_24840	COG1091	dTDP-4-dehydrorhamnose reductase activity
PDUR_24865	COG0463	Glycosyl transferase, family 2
PDUR_24870	COG1216	Glycosyl transferase, family 2
PDUR_24875	COG0662	Cupin 2, conserved barrel domain protein
PDUR_24875	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
PDUR_24880	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
PDUR_24880	COG1215	transferase activity, transferring glycosyl groups
PDUR_24895	COG2890	protein-(glutamine-N5) methyltransferase activity
PDUR_24895	COG0220	tRNA (guanine-N7-)-methyltransferase activity
PDUR_24905	COG1682	transport, permease protein
PDUR_24920	COG1210	Utp--glucose-1-phosphate uridylyltransferase
PDUR_24930	COG0826	peptidase U32
PDUR_24960	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
PDUR_24965	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
PDUR_24970	COG0556	nucleotide-excision repair
PDUR_24980	COG1360	Flagellar Motor Protein
PDUR_25010	COG0404	The glycine cleavage system catalyzes the degradation of glycine
PDUR_25015	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
PDUR_25020	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
PDUR_25035	COG2267	carboxylic ester hydrolase activity
PDUR_25045	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
PDUR_25060	COG0842	Transport permease protein
PDUR_25065	COG1131	(ABC) transporter
PDUR_25075	COG2197	response regulator
PDUR_25090	COG3409	Peptidoglycan-binding domain 1 protein
PDUR_25090	COG0793	Belongs to the peptidase S41A family
PDUR_25095	COG0739	heme binding
PDUR_25100	COG2177	Part of the ABC transporter FtsEX involved in
PDUR_25105	COG2884	Cell division ATP-binding protein ftsE
PDUR_25110	COG2720	vancomycin resistance protein
PDUR_25125	COG0165	Argininosuccinate lyase
PDUR_25130	COG0137	argininosuccinate synthase activity
PDUR_25135	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
PDUR_25145	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
PDUR_25150	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
PDUR_25155	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
PDUR_25160	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
PDUR_25165	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
PDUR_25170	COG0653	protein targeting
PDUR_25175	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
PDUR_25185	COG1278	Cold shock
PDUR_25190	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
PDUR_25195	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
PDUR_25200	COG2089	acid synthase
PDUR_25225	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
PDUR_25235	COG1516	flagellar protein fliS
PDUR_25240	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
PDUR_25250	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
PDUR_25255	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
PDUR_25265	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
PDUR_25270	COG1256	bacterial-type flagellum assembly
PDUR_25270	COG4786	Flagellar basal body rod
PDUR_25295	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
PDUR_25320	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
PDUR_25350	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
PDUR_25370	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PDUR_25390	COG4786	Flagellar basal body rod
PDUR_25400	COG1609	Transcriptional regulator
PDUR_25405	COG0739	heme binding
PDUR_25410	COG2385	sporulation resulting in formation of a cellular spore
PDUR_25415	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PDUR_25420	COG4836	Membrane
PDUR_25425	COG0355	proton-transporting ATP synthase activity, rotational mechanism
PDUR_25430	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
PDUR_25435	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
PDUR_25440	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
PDUR_25455	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PDUR_25460	COG0356	it plays a direct role in the translocation of protons across the membrane
PDUR_25475	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
PDUR_25485	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
PDUR_25490	COG4475	Protein of unknown function (DUF436)
PDUR_25495	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PDUR_25500	COG1971	Probably functions as a manganese efflux pump
PDUR_25505	COG0009	L-threonylcarbamoyladenylate synthase
PDUR_25520	COG0772	Belongs to the SEDS family
PDUR_25525	COG2890	protein-(glutamine-N5) methyltransferase activity
PDUR_25530	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
PDUR_25535	COG0012	GTP binding
PDUR_25550	COG1304	FMN binding
PDUR_25555	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PDUR_25575	COG1279	arginine transmembrane transporter activity
PDUR_25580	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PDUR_25585	COG5002	protein histidine kinase activity
PDUR_25595	COG1132	(ABC) transporter
PDUR_25600	COG0746	molybdenum cofactor guanylyltransferase activity
PDUR_25605	COG2814	Major facilitator Superfamily
PDUR_25610	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PDUR_25625	COG2258	MOSC domain
PDUR_25635	COG0243	molybdopterin cofactor binding
PDUR_25640	COG2116	formate transmembrane transporter activity
PDUR_25645	COG0446	pyridine nucleotide-disulphide oxidoreductase
PDUR_25655	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PDUR_25665	COG1876	peptidase activity
PDUR_25675	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
PDUR_25690	COG1587	Uroporphyrinogen-III synthase
PDUR_25700	COG0735	belongs to the Fur family
PDUR_25705	COG3706	GGDEF domain
PDUR_25710	COG0723	plastoquinol--plastocyanin reductase activity
PDUR_25710	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PDUR_25715	COG0300	oxidoreductase activity
PDUR_25735	COG1846	Transcriptional regulator
PDUR_25745	COG0583	DNA-binding transcription factor activity
PDUR_25755	COG1346	cytolysis
PDUR_25770	COG1368	sulfuric ester hydrolase activity
PDUR_25825	COG4372	Transposase
PDUR_25970	COG0840	transmembrane signaling receptor activity
PDUR_25975	COG0697	spore germination
PDUR_26025	COG2210	Belongs to the sulfur carrier protein TusA family
PDUR_26035	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PDUR_26045	COG0667	Aldo Keto reductase
PDUR_26060	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_26065	COG0800	Aldolase
PDUR_26070	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PDUR_26085	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PDUR_26095	COG1609	Transcriptional regulator
PDUR_26125	COG1621	beta-fructofuranosidase activity
PDUR_26170	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
PDUR_26175	COG1131	(ABC) transporter
PDUR_26210	COG1464	Belongs to the NlpA lipoprotein family
PDUR_26215	COG2011	ABC-type metal ion transport system permease component
PDUR_26240	COG0493	'glutamate synthase
PDUR_26245	COG2508	Transcriptional regulator
PDUR_26250	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
PDUR_26255	COG1012	belongs to the aldehyde dehydrogenase family
PDUR_26260	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PDUR_26265	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_26270	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PDUR_26280	COG1801	Protein of unknown function DUF72
PDUR_26300	COG1122	ATPase activity
PDUR_26345	COG2814	Major facilitator Superfamily
PDUR_26355	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_26360	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_26370	COG0400	carboxylic ester hydrolase activity
PDUR_26375	COG0346	lactoylglutathione lyase activity
PDUR_26380	COG2259	Doxx family
PDUR_26385	COG1846	Transcriptional regulator
PDUR_26390	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
PDUR_26395	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
PDUR_26415	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
PDUR_26435	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
PDUR_26500	COG4974	Belongs to the 'phage' integrase family
PDUR_26510	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
PDUR_26530	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
PDUR_26535	COG0697	spore germination
PDUR_26540	COG0667	Aldo Keto reductase
PDUR_26550	COG1151	hydroxylamine reductase activity
PDUR_26560	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
PDUR_26580	COG0366	Alpha amylase catalytic
PDUR_26585	COG1609	Transcriptional regulator
PDUR_26590	COG2350	Protein conserved in bacteria
PDUR_26595	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PDUR_26600	COG2195	Cleaves the N-terminal amino acid of tripeptides
PDUR_26605	COG1733	regulation of RNA biosynthetic process
PDUR_26620	COG4191	Histidine kinase
PDUR_26630	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
PDUR_26635	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
PDUR_26640	COG0534	Mate efflux family protein
PDUR_26655	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
PDUR_26665	COG0254	rRNA binding
PDUR_26715	COG2076	Multidrug Resistance protein
PDUR_26755	COG3832	glyoxalase III activity
PDUR_26780	COG3069	C4-dicarboxylate transmembrane transporter activity
PDUR_26785	COG2217	Heavy metal translocating P-type atpase
PDUR_26800	COG3293	Transposase
PDUR_26810	COG4555	ABC transporter
PDUR_26855	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
PDUR_26860	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_26865	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
PDUR_26890	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
PDUR_26900	COG2249	NAD(P)H dehydrogenase (quinone) activity
PDUR_26915	COG1733	regulation of RNA biosynthetic process
PDUR_26920	COG2816	NAD+ diphosphatase activity
PDUR_26930	COG0840	transmembrane signaling receptor activity
PDUR_26965	COG0640	Transcriptional regulator
PDUR_26970	COG1802	Transcriptional regulator
PDUR_26985	COG2207	Transcriptional regulator
PDUR_26985	COG4753	response regulator
PDUR_27000	COG3842	ATPase activity
PDUR_27005	COG1840	ABC-type Fe3 transport system, periplasmic component
PDUR_27015	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
PDUR_27025	COG0697	spore germination
PDUR_27030	COG0626	cystathionine gamma-synthase activity
PDUR_27035	COG0833	amino acid
PDUR_27060	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
PDUR_27065	COG0252	asparaginase activity
PDUR_27080	COG0583	DNA-binding transcription factor activity
PDUR_27090	COG0702	epimerase
PDUR_27095	COG2323	membrane
PDUR_27110	COG4989	oxidoreductase activity
PDUR_27125	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PDUR_27130	COG5002	protein histidine kinase activity
PDUR_27130	COG3850	Histidine kinase
PDUR_27145	COG0745	RESPONSE REGULATOR receiver
PDUR_27160	COG2824	Alkylphosphonate utilization operon protein PhnA
PDUR_27170	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_27175	COG0300	oxidoreductase activity
PDUR_27230	COG0745	RESPONSE REGULATOR receiver
PDUR_27230	COG3706	GGDEF domain
PDUR_27255	COG0436	Aminotransferase
PDUR_27270	COG5002	protein histidine kinase activity
PDUR_27275	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
PDUR_27315	COG0789	Transcriptional regulator
PDUR_27315	COG4978	Transcriptional regulator
PDUR_27320	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_27325	COG0579	oxidoreductase
PDUR_27350	COG3708	Transcriptional regulator
PDUR_27350	COG2207	Transcriptional regulator
PDUR_27365	COG1051	belongs to the nudix hydrolase family
PDUR_27365	COG1056	cytidyltransferase-related domain
PDUR_27380	COG2249	NAD(P)H dehydrogenase (quinone) activity
PDUR_27385	COG1733	regulation of RNA biosynthetic process
PDUR_27400	COG0187	DNA topoisomerase II activity
PDUR_27405	COG1028	Short-chain dehydrogenase reductase Sdr
PDUR_27415	COG3973	AAA domain
PDUR_27425	COG1476	TRANSCRIPTIONal
PDUR_27430	COG1733	regulation of RNA biosynthetic process
PDUR_27435	COG2249	NAD(P)H dehydrogenase (quinone) activity
PDUR_27510	COG1113	amino acid transport
PDUR_27515	COG5001	Diguanylate cyclase
PDUR_27515	COG5002	protein histidine kinase activity
PDUR_27515	COG3447	MASE1 domain protein
PDUR_27540	COG1309	transcriptional regulator
PDUR_27550	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
PDUR_27555	COG1061	Type III restriction enzyme res subunit
PDUR_27560	COG1002	Type II restriction enzyme, methylase subunits
PDUR_27605	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
PDUR_27610	COG4988	ABC transporter
PDUR_27615	COG1294	oxidase, subunit
PDUR_27620	COG1271	oxidase subunit
PDUR_27630	COG1278	Cold shock
PDUR_27635	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
PDUR_27645	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
PDUR_27660	COG5002	protein histidine kinase activity
PDUR_27665	COG0745	RESPONSE REGULATOR receiver
PDUR_27670	COG0739	heme binding
PDUR_27685	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
PDUR_27690	COG0305	Participates in initiation and elongation during chromosome replication
PDUR_27695	COG0359	binds to the 23S rRNA
PDUR_27700	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
PDUR_27720	COG1316	TRANSCRIPTIONal
PDUR_27730	COG0601	transmembrane transport
PDUR_27740	COG1193	negative regulation of DNA recombination
PDUR_27745	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
PDUR_27750	COG0629	single-stranded DNA binding
PDUR_27755	COG0360	Binds together with S18 to 16S ribosomal RNA
PDUR_27775	COG1131	(ABC) transporter
PDUR_27780	COG2205	protein histidine kinase activity
PDUR_27785	COG0745	RESPONSE REGULATOR receiver
PDUR_27795	COG4481	Protein conserved in bacteria
PDUR_27800	COG0668	transmembrane transport
PDUR_27820	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PDUR_27825	COG1475	DNA binding
PDUR_27830	COG1192	Involved in chromosome partitioning
PDUR_27835	COG1475	DNA binding
PDUR_27840	COG0357	Ribosomal RNA small subunit methyltransferase G
PDUR_27845	COG0445	tRNA wobble uridine modification
PDUR_27850	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
PDUR_27855	COG1847	R3H domain protein
PDUR_27860	COG0706	membrane insertase activity
PDUR_27865	COG0594	ribonuclease P activity
PDUR_27870	COG0230	Belongs to the bacterial ribosomal protein bL34 family