locus-tag	class	description
Pmu3358_00010	COG1309	transcriptional regulator
Pmu3358_00015	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Pmu3358_00020	COG1956	GAF domain-containing protein
Pmu3358_00025	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Pmu3358_00035	COG1393	Belongs to the ArsC family
Pmu3358_00040	COG3036	rescue of stalled ribosome
Pmu3358_00090	COG4785	May be involved in cell division
Pmu3358_00095	COG0513	Belongs to the DEAD box helicase family
Pmu3358_00105	COG3842	ATPase activity
Pmu3358_00110	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
Pmu3358_00135	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
Pmu3358_00140	COG1027	Aspartate ammonia-lyase
Pmu3358_00160	COG4545	Glutaredoxin-related protein
Pmu3358_00170	COG4325	translation initiation factor activity
Pmu3358_00190	COG0511	ligase activity, forming carbon-carbon bonds
Pmu3358_00195	COG0439	Biotin carboxylase
Pmu3358_00200	COG3924	membrane
Pmu3358_00205	COG4145	pantothenate transmembrane transporter activity
Pmu3358_00260	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Pmu3358_00265	COG4558	Periplasmic binding protein
Pmu3358_00280	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Pmu3358_00300	COG3691	Protein conserved in bacteria
Pmu3358_00310	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
Pmu3358_00320	COG0861	Integral membrane protein TerC family
Pmu3358_00325	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Pmu3358_00325	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Pmu3358_00330	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
Pmu3358_00335	COG3722	fumarate hydratase activity
Pmu3358_00350	COG5645	(Lipo)protein
Pmu3358_00355	COG0210	DNA helicase
Pmu3358_00375	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Pmu3358_00385	COG1238	metal cluster binding
Pmu3358_00400	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
Pmu3358_00415	COG0697	spore germination
Pmu3358_00425	COG0561	phosphatase activity
Pmu3358_00430	COG1702	phosphate starvation-inducible protein PhoH
Pmu3358_00445	COG1444	tRNA N-acetyltransferase activity
Pmu3358_00455	COG2194	sulfuric ester hydrolase activity
Pmu3358_00460	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
Pmu3358_00465	COG4211	Belongs to the binding-protein-dependent transport system permease family
Pmu3358_00475	COG1879	ABC-type sugar transport system periplasmic component
Pmu3358_00480	COG1609	Transcriptional regulator
Pmu3358_00485	COG1085	galactose-1-phosphate uridylyltransferase
Pmu3358_00495	COG2017	converts alpha-aldose to the beta-anomer
Pmu3358_00510	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Pmu3358_00515	COG1088	dTDP-glucose 4,6-dehydratase activity
Pmu3358_00540	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
Pmu3358_00550	COG1393	Belongs to the ArsC family
Pmu3358_00560	COG1876	peptidase activity
Pmu3358_00565	COG0494	nUDIX hydrolase
Pmu3358_00570	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
Pmu3358_00580	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
Pmu3358_00585	COG1596	polysaccharide export
Pmu3358_00595	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Pmu3358_00620	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
Pmu3358_00650	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
Pmu3358_00655	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Pmu3358_00680	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Pmu3358_00705	COG0626	cystathionine gamma-synthase activity
Pmu3358_00725	COG1530	ribonuclease E activity
Pmu3358_00735	COG2056	Na+-H+ antiporter family
Pmu3358_00745	COG0346	lactoylglutathione lyase activity
Pmu3358_00760	COG1755	Isoprenylcysteine carboxyl methyltransferase
Pmu3358_00775	COG0494	nUDIX hydrolase
Pmu3358_00810	COG1271	oxidase subunit
Pmu3358_00815	COG1294	oxidase, subunit
Pmu3358_00830	COG0824	Thioesterase
Pmu3358_00835	COG0811	peptide transport
Pmu3358_00840	COG0848	biopolymer transport protein
Pmu3358_00845	COG3064	Membrane
Pmu3358_00865	COG2165	general secretion pathway protein
Pmu3358_00870	COG4795	General secretion pathway protein
Pmu3358_00885	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
Pmu3358_00890	COG0456	acetyltransferase
Pmu3358_00895	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
Pmu3358_00915	COG1840	ABC-type Fe3 transport system, periplasmic component
Pmu3358_00925	COG1840	ABC-type Fe3 transport system, periplasmic component
Pmu3358_00955	COG0659	secondary active sulfate transmembrane transporter activity
Pmu3358_00960	COG0800	Aldolase
Pmu3358_00975	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Pmu3358_00980	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Pmu3358_00985	COG0084	hydrolase, TatD family'
Pmu3358_01000	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Pmu3358_01000	COG1328	CTP reductase activity
Pmu3358_01005	COG1858	cytochrome C peroxidase
Pmu3358_01015	COG0527	aspartate kinase activity
Pmu3358_01025	COG2860	membrane
Pmu3358_01035	COG3069	C4-dicarboxylate transmembrane transporter activity
Pmu3358_01055	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Pmu3358_01065	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
Pmu3358_01070	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
Pmu3358_01075	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
Pmu3358_01080	COG1022	Amp-dependent synthetase and ligase
Pmu3358_01090	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
Pmu3358_01110	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Pmu3358_01215	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
Pmu3358_01425	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Pmu3358_01445	COG0667	Aldo Keto reductase
Pmu3358_01465	COG2132	Multicopper oxidase
Pmu3358_01505	COG3173	Aminoglycoside phosphotransferase
Pmu3358_01530	COG0629	single-stranded DNA binding
Pmu3358_01560	COG0305	Participates in initiation and elongation during chromosome replication
Pmu3358_01580	COG0748	coenzyme F420 binding
Pmu3358_01585	COG4771	TonB-dependent receptor
Pmu3358_01585	COG1629	transport
Pmu3358_01595	COG0489	protein tyrosine kinase activity
Pmu3358_01630	COG1518	maintenance of DNA repeat elements
Pmu3358_01640	COG0784	Response regulator, receiver
Pmu3358_01640	COG2198	Histidine kinase
Pmu3358_01640	COG5002	protein histidine kinase activity
Pmu3358_01655	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
Pmu3358_01660	COG1959	2 iron, 2 sulfur cluster binding
Pmu3358_01670	COG0822	iron-sulfur transferase activity
Pmu3358_01675	COG0316	Belongs to the HesB IscA family
Pmu3358_01690	COG0633	Ferredoxin
Pmu3358_01705	COG0741	lytic transglycosylase activity
Pmu3358_01710	COG2350	Protein conserved in bacteria
Pmu3358_01715	COG1607	acyl-coa hydrolase
Pmu3358_01735	COG0497	DNA recombination
Pmu3358_01750	COG1823	symporter activity
Pmu3358_01765	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Pmu3358_01775	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Pmu3358_01780	COG1530	ribonuclease E activity
Pmu3358_01800	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
Pmu3358_01805	COG0142	geranyltranstransferase activity
Pmu3358_01820	COG0697	spore germination
Pmu3358_01825	COG0697	spore germination
Pmu3358_01835	COG0735	belongs to the Fur family
Pmu3358_01840	COG0716	FMN binding
Pmu3358_01850	COG0596	Alpha beta hydrolase
Pmu3358_01855	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
Pmu3358_01860	COG0318	PFAM AMP-dependent synthetase and ligase
Pmu3358_01865	COG3264	Mechanosensitive ion channel
Pmu3358_01865	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
Pmu3358_01875	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
Pmu3358_01880	COG0730	response to heat
Pmu3358_01885	COG1560	Kdo2-lipid A biosynthetic process
Pmu3358_01895	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
Pmu3358_01905	COG0251	oxidation-reduction process
Pmu3358_01920	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
Pmu3358_01925	COG0187	DNA topoisomerase II activity
Pmu3358_01930	COG0019	diaminopimelate decarboxylase activity
Pmu3358_01945	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Pmu3358_01945	COG4797	methyltransferase
Pmu3358_01955	COG4143	(ABC) transporter
Pmu3358_01975	COG0733	neurotransmitter:sodium symporter activity
Pmu3358_01980	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Pmu3358_02035	COG1289	transmembrane transporter activity
Pmu3358_02040	COG3304	Inner membrane component domain
Pmu3358_02060	COG1108	ABC-type Mn2 Zn2 transport systems permease components
Pmu3358_02065	COG1108	ABC-type Mn2 Zn2 transport systems permease components
Pmu3358_02070	COG1121	(ABC) transporter
Pmu3358_02080	COG2920	part of a sulfur-relay system
Pmu3358_02095	COG2864	formate dehydrogenase
Pmu3358_02100	COG0437	4 iron, 4 sulfur cluster binding
Pmu3358_02105	COG3383	formate dehydrogenase (NAD+) activity
Pmu3358_02105	COG0243	molybdopterin cofactor binding
Pmu3358_02110	COG3383	formate dehydrogenase (NAD+) activity
Pmu3358_02110	COG0243	molybdopterin cofactor binding
Pmu3358_02120	COG0210	DNA helicase
Pmu3358_02135	COG0463	Glycosyl transferase, family 2
Pmu3358_02170	COG0583	DNA-binding transcription factor activity
Pmu3358_02180	COG0488	(ABC) transporter
Pmu3358_02185	COG3683	transport system, periplasmic component
Pmu3358_02190	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
Pmu3358_02215	COG5002	protein histidine kinase activity
Pmu3358_02220	COG0745	RESPONSE REGULATOR receiver
Pmu3358_02250	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
Pmu3358_02255	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
Pmu3358_02265	COG2062	phosphohistidine phosphatase, SixA
Pmu3358_02295	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
Pmu3358_02300	COG0577	efflux transmembrane transporter activity
Pmu3358_02300	COG1136	(ABC) transporter
Pmu3358_02310	COG1136	(ABC) transporter
Pmu3358_02310	COG0577	efflux transmembrane transporter activity
Pmu3358_02325	COG0672	)-iron permease
Pmu3358_02335	COG2837	iron assimilation
Pmu3358_02340	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
Pmu3358_02355	COG0024	Methionine aminopeptidase
Pmu3358_02395	COG2431	L-lysine efflux transmembrane transporter activity
Pmu3358_02400	COG3593	DNA synthesis involved in DNA repair
Pmu3358_02415	COG3101	peptidyl-lysine hydroxylation
Pmu3358_02445	COG1611	Belongs to the LOG family
Pmu3358_02455	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
Pmu3358_02460	COG3098	single-species biofilm formation
Pmu3358_02485	COG1067	ATP-dependent peptidase activity
Pmu3358_02495	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
Pmu3358_02500	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
Pmu3358_02580	COG1434	Gram-negative-bacterium-type cell wall biogenesis
Pmu3358_02595	COG3306	glycosyltransferase involved in LPS biosynthesis
Pmu3358_02605	COG1216	Glycosyl transferase, family 2
Pmu3358_02610	COG1216	Glycosyl transferase, family 2
Pmu3358_02615	COG2951	lytic endotransglycosylase activity
Pmu3358_02620	COG2252	PERMEase
Pmu3358_02625	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
Pmu3358_02630	COG1074	ATP-dependent DNA helicase activity
Pmu3358_02635	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
Pmu3358_02640	COG2999	glutathione oxidoreductase activity
Pmu3358_02665	COG2969	positive regulation of protein catabolic process
Pmu3358_02670	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
Pmu3358_02675	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
Pmu3358_02675	COG0517	IMP dehydrogenase activity
Pmu3358_02690	COG1538	Outer membrane efflux protein
Pmu3358_02700	COG1115	amino acid carrier protein
Pmu3358_02720	COG0142	geranyltranstransferase activity
Pmu3358_02730	COG0243	molybdopterin cofactor binding
Pmu3358_02735	COG3005	denitrification pathway
Pmu3358_02765	COG1640	4-alpha-glucanotransferase
Pmu3358_02775	COG1523	belongs to the glycosyl hydrolase 13 family
Pmu3358_02805	COG1090	epimerase
Pmu3358_02825	COG3102	Protein conserved in bacteria
Pmu3358_02835	COG3133	Outer membrane lipoprotein
Pmu3358_02860	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Pmu3358_02865	COG4591	ABC-type transport system involved in lipoprotein release permease component
Pmu3358_02875	COG4591	ABC-type transport system involved in lipoprotein release permease component
Pmu3358_02880	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
Pmu3358_02890	COG0402	S-adenosylhomocysteine deaminase activity
Pmu3358_02895	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
Pmu3358_02900	COG0583	DNA-binding transcription factor activity
Pmu3358_02910	COG2833	Protein of unknown function (DUF455)
Pmu3358_02915	COG1946	Acyl-CoA thioesterase
Pmu3358_02925	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
Pmu3358_02930	COG4988	ABC transporter
Pmu3358_02935	COG0492	ferredoxin-NADP+ reductase activity
Pmu3358_02940	COG3118	belongs to the thioredoxin family
Pmu3358_02945	COG0288	reversible hydration of carbon dioxide
Pmu3358_02950	COG1629	transport
Pmu3358_02965	COG4221	oxidoreductase activity
Pmu3358_02985	COG0512	Glutamine amidotransferase of anthranilate synthase
Pmu3358_02990	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
Pmu3358_02995	COG0616	signal peptide processing
Pmu3358_03010	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Pmu3358_03030	COG0747	negative chemotaxis
Pmu3358_03040	COG0730	response to heat
Pmu3358_03045	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Pmu3358_03050	COG3119	arylsulfatase activity
Pmu3358_03055	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Pmu3358_03060	COG0641	radical SAM
Pmu3358_03065	COG0676	glucose-6-phosphate 1-epimerase activity
Pmu3358_03075	COG0291	Belongs to the bacterial ribosomal protein bL35 family
Pmu3358_03115	COG0697	spore germination
Pmu3358_03120	COG2925	Exonuclease
Pmu3358_03125	COG4575	ribosome binding
Pmu3358_03145	COG0613	PHP domain protein
Pmu3358_03155	COG0308	aminopeptidase N
Pmu3358_03160	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
Pmu3358_03165	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
Pmu3358_03170	COG1448	Aminotransferase
Pmu3358_03180	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
Pmu3358_03200	COG0791	NLP P60 protein
Pmu3358_03230	COG0564	pseudouridine synthase activity
Pmu3358_03235	COG0406	alpha-ribazole phosphatase activity
Pmu3358_03240	COG0285	dihydrofolate synthase activity
Pmu3358_03265	COG0586	Pfam SNARE associated Golgi protein
Pmu3358_03275	COG1940	carbohydrate kinase activity
Pmu3358_03285	COG4953	penicillin-binding protein 1C
Pmu3358_03305	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
Pmu3358_03310	COG2823	Periplasmic or secreted lipoprotein
Pmu3358_03315	COG0307	riboflavin synthase, alpha
Pmu3358_03325	COG0673	inositol 2-dehydrogenase activity
Pmu3358_03330	COG0469	pyruvate kinase activity
Pmu3358_03340	COG1278	Cold shock
Pmu3358_03365	COG0583	DNA-binding transcription factor activity
Pmu3358_03375	COG0009	L-threonylcarbamoyladenylate synthase
Pmu3358_03380	COG4409	exo-alpha-(2->6)-sialidase activity
Pmu3358_03385	COG0287	Prephenate dehydrogenase
Pmu3358_03385	COG1605	Chorismate mutase
Pmu3358_03390	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
Pmu3358_03395	COG1528	Iron-storage protein
Pmu3358_03400	COG1528	Iron-storage protein
Pmu3358_03410	COG0589	response to stress
Pmu3358_03420	COG0616	signal peptide processing
Pmu3358_03425	COG0778	Nitroreductase
Pmu3358_03430	COG0515	serine threonine protein kinase
Pmu3358_03445	COG0671	phosphoesterase, PA-phosphatase related
Pmu3358_03455	COG4166	transmembrane transport
Pmu3358_03460	COG2832	Protein of unknown function (DUF454)
Pmu3358_03465	COG0339	signal peptide processing
Pmu3358_03490	COG1940	carbohydrate kinase activity
Pmu3358_03490	COG1846	Transcriptional regulator
Pmu3358_03505	COG2226	methyltransferase
Pmu3358_03510	COG1944	ATP diphosphatase activity
Pmu3358_03515	COG3105	Protein conserved in bacteria
Pmu3358_03525	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
Pmu3358_03530	COG0708	Exodeoxyribonuclease III
Pmu3358_03545	COG0303	'Molybdopterin
Pmu3358_03550	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
Pmu3358_03555	COG0163	prenyltransferase activity
Pmu3358_03565	COG1286	toxin biosynthetic process
Pmu3358_03580	COG0280	phosphate acetyltransferase
Pmu3358_03580	COG0857	belongs to the CobB CobQ family
Pmu3358_03585	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
Pmu3358_03590	COG0318	PFAM AMP-dependent synthetase and ligase
Pmu3358_03595	COG3065	identical protein binding
Pmu3358_03600	COG1214	PFAM Peptidase M22, glycoprotease
Pmu3358_03605	COG1199	ATP-dependent helicase activity
Pmu3358_03610	COG0676	glucose-6-phosphate 1-epimerase activity
Pmu3358_03620	COG1534	Rna-binding protein
Pmu3358_03635	COG2027	D-alanyl-D-alanine carboxypeptidase
Pmu3358_03640	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Pmu3358_03645	COG0733	neurotransmitter:sodium symporter activity
Pmu3358_03655	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Pmu3358_03660	COG0633	Ferredoxin
Pmu3358_03680	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
Pmu3358_03715	COG1280	lysine exporter protein (LysE YggA)
Pmu3358_03720	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
Pmu3358_03725	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
Pmu3358_03740	COG0814	amino acid
Pmu3358_03745	COG0778	Nitroreductase
Pmu3358_03750	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Pmu3358_03755	COG5339	Protein conserved in bacteria
Pmu3358_03785	COG1629	transport
Pmu3358_03785	COG4771	TonB-dependent receptor
Pmu3358_03795	COG4149	molybdate abc transporter
Pmu3358_03800	COG0725	ABC transporter, periplasmic molybdate-binding protein
Pmu3358_03810	COG2005	Transcriptional regulator
Pmu3358_03820	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Pmu3358_03825	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Pmu3358_03825	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Pmu3358_03840	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
Pmu3358_03845	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
Pmu3358_03890	COG0195	Participates in both transcription termination and antitermination
Pmu3358_03925	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
Pmu3358_03945	COG1643	Atp-dependent helicase
Pmu3358_03950	COG2363	Small membrane protein
Pmu3358_03985	COG0463	Glycosyl transferase, family 2
Pmu3358_04015	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
Pmu3358_04025	COG1704	LemA family
Pmu3358_04030	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
Pmu3358_04030	COG2885	chlorophyll binding
Pmu3358_04035	COG0247	lactate metabolic process
Pmu3358_04035	COG0277	FAD linked oxidase domain protein
Pmu3358_04055	COG3265	gluconokinase activity
Pmu3358_04060	COG1609	Transcriptional regulator
Pmu3358_04065	COG1063	alcohol dehydrogenase
Pmu3358_04070	COG1028	Short-chain dehydrogenase reductase Sdr
Pmu3358_04075	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Pmu3358_04090	COG0626	cystathionine gamma-synthase activity
Pmu3358_04095	COG0450	alkyl hydroperoxide reductase
Pmu3358_04100	COG0023	Translation Initiation Factor
Pmu3358_04110	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
Pmu3358_04120	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
Pmu3358_04130	COG0539	negative regulation of cytoplasmic translation
Pmu3358_04140	COG4771	TonB-dependent receptor
Pmu3358_04145	COG0612	Peptidase, M16
Pmu3358_04155	COG1982	Orn Lys Arg decarboxylase major
Pmu3358_04160	COG0531	amino acid
Pmu3358_04170	COG2990	Protein conserved in bacteria
Pmu3358_04175	COG0814	amino acid
Pmu3358_04195	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Pmu3358_04215	COG0783	Belongs to the Dps family
Pmu3358_04245	COG2927	DNA polymerase III (CHI subunit)
Pmu3358_04255	COG2268	Band 7 protein
Pmu3358_04270	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
Pmu3358_04295	COG3716	PTS system mannose fructose sorbose family IID component
Pmu3358_04300	COG3715	PTS system
Pmu3358_04305	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Pmu3358_04305	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
Pmu3358_04310	COG2814	Major facilitator Superfamily
Pmu3358_04340	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
Pmu3358_04345	COG3094	Invasion gene expression up-regulator, SirB
Pmu3358_04395	COG1450	Type ii and iii secretion system protein
Pmu3358_04425	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Pmu3358_04455	COG2333	competence protein COMEC
Pmu3358_04455	COG0658	competence protein
Pmu3358_04460	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
Pmu3358_04465	COG0617	tRNA 3'-terminal CCA addition
Pmu3358_04470	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Pmu3358_04480	COG2949	membrane
Pmu3358_04485	COG1609	Transcriptional regulator
Pmu3358_04490	COG0440	acetolactate synthase activity
Pmu3358_04495	COG0028	Belongs to the TPP enzyme family
Pmu3358_04500	COG1757	Na H antiporter
Pmu3358_04505	COG2916	Histone family protein nucleoid-structuring protein H-NS
Pmu3358_04510	COG0788	formyltetrahydrofolate deformylase activity
Pmu3358_04515	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
Pmu3358_04530	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Pmu3358_04530	COG1263	PTS System
Pmu3358_04530	COG2190	(PTS) system
Pmu3358_04545	COG1346	cytolysis
Pmu3358_04555	COG1525	nuclease
Pmu3358_04565	COG2166	iron-sulfur cluster assembly
Pmu3358_04575	COG1560	Kdo2-lipid A biosynthetic process
Pmu3358_04580	COG3381	protein complex oligomerization
Pmu3358_04585	COG2249	NAD(P)H dehydrogenase (quinone) activity
Pmu3358_04595	COG0330	HflC and HflK could
Pmu3358_04600	COG1119	ATPase activity
Pmu3358_04610	COG2932	Transcriptional regulator
Pmu3358_04615	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Pmu3358_04620	COG0508	dehydrogenase complex catalyzes the overall conversion of
Pmu3358_04625	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
Pmu3358_04630	COG2190	(PTS) system
Pmu3358_04635	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Pmu3358_04640	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
Pmu3358_04660	COG0802	atpase or kinase
Pmu3358_04665	COG1388	LysM domain
Pmu3358_04665	COG0860	N-Acetylmuramoyl-L-alanine amidase
Pmu3358_04685	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
Pmu3358_04690	COG3283	Transcriptional regulator of aromatic amino acids metabolism
Pmu3358_04700	COG3106	COG3106 Predicted ATPase
Pmu3358_04705	COG4166	transmembrane transport
Pmu3358_04710	COG4168	peptide transport system, permease
Pmu3358_04715	COG4171	peptide transport system, permease
Pmu3358_04720	COG4172	Belongs to the ABC transporter superfamily
Pmu3358_04725	COG4172	Belongs to the ABC transporter superfamily
Pmu3358_04740	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
Pmu3358_04740	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
Pmu3358_04800	COG2814	Major facilitator Superfamily
Pmu3358_04810	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
Pmu3358_04825	COG0508	dehydrogenase complex catalyzes the overall conversion of
Pmu3358_04830	COG0567	Dehydrogenase, E1 component
Pmu3358_04835	COG0372	Belongs to the citrate synthase family
Pmu3358_04855	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Pmu3358_04860	COG3108	Peptidase M15
Pmu3358_04865	COG2989	Protein conserved in bacteria
Pmu3358_04870	COG0793	Belongs to the peptidase S41A family
Pmu3358_04880	COG2995	paraquat-inducible protein a
Pmu3358_04885	COG3008	intermembrane lipid transfer
Pmu3358_04900	COG1176	ABC-type spermidine putrescine transport system, permease component I
Pmu3358_04905	COG1177	transmembrane transport
Pmu3358_04910	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
Pmu3358_04915	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
Pmu3358_04930	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
Pmu3358_04945	COG1522	sequence-specific DNA binding
Pmu3358_04955	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
Pmu3358_04960	COG3025	triphosphatase activity
Pmu3358_04965	COG1392	Phosphate transport regulator
Pmu3358_04970	COG0306	phosphate transporter
Pmu3358_04975	COG4991	sh3 domain protein
Pmu3358_05000	COG0739	heme binding
Pmu3358_05010	COG1108	ABC-type Mn2 Zn2 transport systems permease components
Pmu3358_05015	COG4608	Belongs to the ABC transporter superfamily
Pmu3358_05020	COG0444	Belongs to the ABC transporter superfamily
Pmu3358_05025	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Pmu3358_05030	COG0601	transmembrane transport
Pmu3358_05035	COG0747	negative chemotaxis
Pmu3358_05040	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
Pmu3358_05070	COG0561	phosphatase activity
Pmu3358_05085	COG1862	Preprotein translocase
Pmu3358_05090	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Pmu3358_05095	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Pmu3358_05130	COG0257	Belongs to the bacterial ribosomal protein bL36 family
Pmu3358_05135	COG0745	RESPONSE REGULATOR receiver
Pmu3358_05150	COG3585	molybdate ion transport
Pmu3358_05155	COG0642	Histidine kinase
Pmu3358_05160	COG0745	RESPONSE REGULATOR receiver
Pmu3358_05165	COG2259	Doxx family
Pmu3358_05180	COG3219	Protein conserved in bacteria
Pmu3358_05190	COG1595	DNA-templated transcription, initiation
Pmu3358_05225	COG1840	ABC-type Fe3 transport system, periplasmic component
Pmu3358_05235	COG1053	succinate dehydrogenase
Pmu3358_05240	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
Pmu3358_05255	COG0795	lipopolysaccharide-transporting ATPase activity
Pmu3358_05260	COG0795	lipopolysaccharide-transporting ATPase activity
Pmu3358_05275	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Pmu3358_05280	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
Pmu3358_05315	COG0720	synthase
Pmu3358_05320	COG0602	queuosine metabolic process
Pmu3358_05330	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
Pmu3358_05345	COG5007	Belongs to the BolA IbaG family
Pmu3358_05350	COG3113	response to antibiotic
Pmu3358_05355	COG2854	intermembrane phospholipid transfer
Pmu3358_05360	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
Pmu3358_05365	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Pmu3358_05370	COG1127	ABC transporter
Pmu3358_05375	COG3117	lipopolysaccharide transmembrane transporter activity
Pmu3358_05380	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
Pmu3358_05385	COG1137	ATPase activity
Pmu3358_05390	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Pmu3358_05405	COG2850	peptidyl-arginine hydroxylation
Pmu3358_05415	COG2867	negative regulation of translational initiation
Pmu3358_05440	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Pmu3358_05445	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
Pmu3358_05450	COG2824	Alkylphosphonate utilization operon protein PhnA
Pmu3358_05470	COG1172	Belongs to the binding-protein-dependent transport system permease family
Pmu3358_05475	COG1879	ABC-type sugar transport system periplasmic component
Pmu3358_05480	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Pmu3358_05490	COG0077	Prephenate dehydratase
Pmu3358_05490	COG1605	Chorismate mutase
Pmu3358_05495	COG1979	alcohol dehydrogenase
Pmu3358_05505	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
Pmu3358_05515	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
Pmu3358_05550	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
Pmu3358_05560	COG0768	penicillin binding
Pmu3358_05565	COG3116	cell division
Pmu3358_05580	COG1966	Carbon starvation protein
Pmu3358_05585	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
Pmu3358_05590	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Pmu3358_05595	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Pmu3358_05600	COG1120	ATPase activity
Pmu3358_05610	COG4160	amino acid transport
Pmu3358_05615	COG4215	(ABC) transporter
Pmu3358_05620	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Pmu3358_05625	COG1126	abc transporter atp-binding protein
Pmu3358_05635	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
Pmu3358_05640	COG0312	modulator of DNA gyrase
Pmu3358_05650	COG0330	HflC and HflK could
Pmu3358_05655	COG0330	HflC and HflK could
Pmu3358_05665	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
Pmu3358_05675	COG0527	aspartate kinase activity
Pmu3358_05675	COG0460	homoserine dehydrogenase
Pmu3358_05755	COG0204	Acyl-transferase
Pmu3358_05765	COG5413	integral membrane protein
Pmu3358_05775	COG1509	lysine 2,3-aminomutase activity
Pmu3358_05780	COG3266	domain, Protein
Pmu3358_05780	COG3061	Opacity-associated protein A
Pmu3358_05800	COG2814	Major facilitator Superfamily
Pmu3358_05810	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
Pmu3358_05815	COG1115	amino acid carrier protein
Pmu3358_05840	COG1459	type II secretion system
Pmu3358_05845	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Pmu3358_05850	COG4969	Belongs to the N-Me-Phe pilin family
Pmu3358_05855	COG3023	N-Acetylmuramoyl-L-alanine amidase
Pmu3358_05865	COG0730	response to heat
Pmu3358_05880	COG0590	tRNA wobble adenosine to inosine editing
Pmu3358_05885	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Pmu3358_05895	COG1882	Formate acetyltransferase
Pmu3358_05900	COG2116	formate transmembrane transporter activity
Pmu3358_05905	COG0537	adenosine 5'-monophosphoramidase activity
Pmu3358_05930	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
Pmu3358_05960	COG0681	Belongs to the peptidase S26 family
Pmu3358_06000	COG2267	carboxylic ester hydrolase activity
Pmu3358_06015	COG0436	Aminotransferase
Pmu3358_06030	COG3842	ATPase activity
Pmu3358_06055	COG2095	MarC family integral membrane protein
Pmu3358_06060	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
Pmu3358_06070	COG4178	(ABC) transporter
Pmu3358_06085	COG0121	glutamine amidotransferase
Pmu3358_06090	COG0814	amino acid
Pmu3358_06095	COG1760	l-serine dehydratase
Pmu3358_06100	COG3738	Protein conserved in bacteria
Pmu3358_06110	COG0753	catalase activity
Pmu3358_06115	COG2081	HI0933 family
Pmu3358_06120	COG4235	cytochrome complex assembly
Pmu3358_06120	COG3088	subunit of a heme lyase
Pmu3358_06125	COG4235	cytochrome complex assembly
Pmu3358_06125	COG3088	subunit of a heme lyase
Pmu3358_06135	COG1138	Cytochrome C-type biogenesis protein
Pmu3358_06140	COG3301	Polysulphide reductase, NrfD
Pmu3358_06145	COG0437	4 iron, 4 sulfur cluster binding
Pmu3358_06150	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
Pmu3358_06170	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
Pmu3358_06185	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
Pmu3358_06200	COG0346	lactoylglutathione lyase activity
Pmu3358_06220	COG1138	Cytochrome C-type biogenesis protein
Pmu3358_06230	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
Pmu3358_06235	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
Pmu3358_06240	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
Pmu3358_06250	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Pmu3358_06250	COG0475	glutathione-regulated potassium exporter activity
Pmu3358_06265	COG0366	Alpha amylase catalytic
Pmu3358_06275	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Pmu3358_06275	COG1263	PTS System
Pmu3358_06285	COG2814	Major facilitator Superfamily
Pmu3358_06295	COG0281	malic enzyme
Pmu3358_06295	COG0280	phosphate acetyltransferase
Pmu3358_06305	COG0737	Belongs to the 5'-nucleotidase family
Pmu3358_06315	COG2976	Protein conserved in bacteria
Pmu3358_06330	COG1426	Protein conserved in bacteria
Pmu3358_06335	COG3063	Type IV pilus biogenesis stability protein PilW
Pmu3358_06345	COG0628	permease
Pmu3358_06355	COG0521	Mo-molybdopterin cofactor biosynthetic process
Pmu3358_06360	COG4589	Belongs to the CDS family
Pmu3358_06370	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Pmu3358_06375	COG0471	metal ion transport
Pmu3358_06375	COG0490	domain, Protein
Pmu3358_06420	COG0575	Belongs to the CDS family
Pmu3358_06455	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Pmu3358_06460	COG0842	Transport permease protein
Pmu3358_06460	COG1129	ABC transporter
Pmu3358_06465	COG0842	Transport permease protein
Pmu3358_06470	COG1538	Outer membrane efflux protein
Pmu3358_06475	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Pmu3358_06480	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Pmu3358_06500	COG1652	LysM domain
Pmu3358_06505	COG2321	neutral zinc metallopeptidase
Pmu3358_06510	COG3730	PTS system glucitol sorbitol-specific
Pmu3358_06525	COG1028	Short-chain dehydrogenase reductase Sdr
Pmu3358_06530	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
Pmu3358_06535	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Pmu3358_06540	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Pmu3358_06545	COG1349	DNA-binding transcription factor activity
Pmu3358_06575	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
Pmu3358_06580	COG1792	Involved in formation and maintenance of cell shape
Pmu3358_06590	COG0557	exoribonuclease II activity
Pmu3358_06660	COG1686	Belongs to the peptidase S11 family
Pmu3358_06670	COG0772	Belongs to the SEDS family
Pmu3358_06675	COG0768	penicillin binding
Pmu3358_06685	COG0799	negative regulation of ribosome biogenesis
Pmu3358_06695	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
Pmu3358_06705	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
Pmu3358_06715	COG1028	Short-chain dehydrogenase reductase Sdr
Pmu3358_06720	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
Pmu3358_06740	COG1399	metal-binding, possibly nucleic acid-binding protein
Pmu3358_06750	COG0601	transmembrane transport
Pmu3358_06755	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Pmu3358_06765	COG4608	Belongs to the ABC transporter superfamily
Pmu3358_06780	COG0500	methyltransferase
Pmu3358_06785	COG2830	Protein of unknown function (DUF452)
Pmu3358_06795	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
Pmu3358_06805	COG0545	Peptidyl-prolyl cis-trans isomerase
Pmu3358_06820	COG2966	Psort location CytoplasmicMembrane, score
Pmu3358_06825	COG3610	response to peptide
Pmu3358_06830	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
Pmu3358_06835	COG2217	Heavy metal translocating P-type atpase
Pmu3358_06840	COG2608	mercury ion transmembrane transporter activity
Pmu3358_06850	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
Pmu3358_06855	COG2205	protein histidine kinase activity
Pmu3358_06865	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Pmu3358_06880	COG3083	sulfuric ester hydrolase activity
Pmu3358_06885	COG0402	S-adenosylhomocysteine deaminase activity
Pmu3358_06890	COG1011	Hydrolase
Pmu3358_06920	COG1561	YicC-like family, N-terminal region
Pmu3358_06925	COG0354	folic acid binding
Pmu3358_06955	COG1385	rRNA (uridine-N3-)-methyltransferase activity
Pmu3358_06970	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Pmu3358_06975	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
Pmu3358_06980	COG3307	-O-antigen
Pmu3358_06985	COG0191	fructose-bisphosphate aldolase activity
Pmu3358_06995	COG3719	Belongs to the RNase T2 family
Pmu3358_07000	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Pmu3358_07005	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Pmu3358_07010	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Pmu3358_07015	COG1556	Lactate utilization protein
Pmu3358_07020	COG1139	Iron-sulfur cluster binding protein
Pmu3358_07025	COG0247	lactate metabolic process
Pmu3358_07030	COG1620	l-lactate permease
Pmu3358_07035	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
Pmu3358_07045	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Pmu3358_07050	COG1621	beta-fructofuranosidase activity
Pmu3358_07070	COG0859	PFAM glycosyl transferase family 9
Pmu3358_07075	COG0859	PFAM glycosyl transferase family 9
Pmu3358_07080	COG0513	Belongs to the DEAD box helicase family
Pmu3358_07090	COG3201	nicotinamide mononucleotide transporter
Pmu3358_07115	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Pmu3358_07120	COG0778	Nitroreductase
Pmu3358_07165	COG1262	PFAM Formylglycine-generating sulfatase enzyme
Pmu3358_07175	COG0577	efflux transmembrane transporter activity
Pmu3358_07175	COG1136	(ABC) transporter
Pmu3358_07215	COG3071	HemY protein
Pmu3358_07220	COG2959	enzyme of heme biosynthesis
Pmu3358_07240	COG2197	response regulator
Pmu3358_07245	COG0729	surface antigen
Pmu3358_07250	COG2911	Protein conserved in bacteria
Pmu3358_07280	COG3085	chromosome segregation
Pmu3358_07285	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Pmu3358_07290	COG3084	Protein conserved in bacteria
Pmu3358_07305	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
Pmu3358_07305	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
Pmu3358_07310	COG1105	Belongs to the carbohydrate kinase PfkB family
Pmu3358_07315	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Pmu3358_07315	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Pmu3358_07315	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
Pmu3358_07330	COG3005	denitrification pathway
Pmu3358_07340	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
Pmu3358_07350	COG1595	DNA-templated transcription, initiation
Pmu3358_07355	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
Pmu3358_07360	COG3026	antisigma factor binding
Pmu3358_07365	COG3086	response to oxidative stress
Pmu3358_07370	COG1763	Mo-molybdopterin cofactor biosynthetic process
Pmu3358_07375	COG2814	Major facilitator Superfamily
Pmu3358_07455	COG0582	viral genome integration into host DNA
Pmu3358_07465	COG1957	nucleoside hydrolase
Pmu3358_07470	COG3276	selenocysteine insertion sequence binding
Pmu3358_07475	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Pmu3358_07475	COG2221	Nitrite and sulphite reductase 4Fe-4S
Pmu3358_07480	COG3381	protein complex oligomerization
Pmu3358_07485	COG3302	dmso reductase anchor subunit
Pmu3358_07490	COG0437	4 iron, 4 sulfur cluster binding
Pmu3358_07495	COG0243	molybdopterin cofactor binding
Pmu3358_07500	COG1285	pathogenesis
Pmu3358_07505	COG2190	(PTS) system
Pmu3358_07505	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Pmu3358_07505	COG1263	PTS System
Pmu3358_07555	COG2610	gluconate transmembrane transporter activity
Pmu3358_07560	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Pmu3358_07575	COG3622	Belongs to the hyi family
Pmu3358_07580	COG0235	Class ii aldolase
Pmu3358_07585	COG3395	kinase activity
Pmu3358_07590	COG2084	Dehydrogenase
Pmu3358_07595	COG1349	DNA-binding transcription factor activity
Pmu3358_07600	COG2195	Cleaves the N-terminal amino acid of tripeptides
Pmu3358_07610	COG1312	Catalyzes the dehydration of D-mannonate
Pmu3358_07615	COG2186	Transcriptional regulator
Pmu3358_07620	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Pmu3358_07625	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
Pmu3358_07635	COG1028	Short-chain dehydrogenase reductase Sdr
Pmu3358_07645	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Pmu3358_07650	COG0800	Aldolase
Pmu3358_07660	COG1070	Carbohydrate kinase
Pmu3358_07665	COG2115	Belongs to the xylose isomerase family
Pmu3358_07675	COG1757	Na H antiporter
Pmu3358_07680	COG4213	ABC transporter substrate-binding protein
Pmu3358_07690	COG4214	carbohydrate transport
Pmu3358_07695	COG1609	Transcriptional regulator
Pmu3358_07695	COG2207	Transcriptional regulator
Pmu3358_07715	COG1940	carbohydrate kinase activity
Pmu3358_07725	COG1879	ABC-type sugar transport system periplasmic component
Pmu3358_07730	COG1172	Belongs to the binding-protein-dependent transport system permease family
Pmu3358_07740	COG1741	Belongs to the pirin family
Pmu3358_07745	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
Pmu3358_07745	COG1017	nitric oxide dioxygenase activity
Pmu3358_07750	COG4191	Histidine kinase
Pmu3358_07750	COG0784	Response regulator, receiver
Pmu3358_07765	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Pmu3358_07770	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
Pmu3358_07780	COG2960	long-chain fatty acid transporting porin activity
Pmu3358_07785	COG3172	ATPase kinase involved in NAD metabolism
Pmu3358_07790	COG2129	metallophosphoesterase
Pmu3358_07825	COG0201	protein transport
Pmu3358_07835	COG1841	ribosomal large subunit assembly
Pmu3358_07875	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
Pmu3358_07900	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
Pmu3358_07905	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
Pmu3358_07930	COG0051	transcription antitermination factor activity, RNA binding
Pmu3358_07935	COG0038	chloride channel
Pmu3358_07945	COG0814	amino acid
Pmu3358_07965	COG0511	ligase activity, forming carbon-carbon bonds
Pmu3358_07965	COG5016	pyruvate
Pmu3358_07975	COG0019	diaminopimelate decarboxylase activity
Pmu3358_07990	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
Pmu3358_08005	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Pmu3358_08010	COG1045	serine acetyltransferase
Pmu3358_08025	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
Pmu3358_08030	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
Pmu3358_08035	COG0433	COG0433 Predicted ATPase
Pmu3358_08050	COG0705	Rhomboid family
Pmu3358_08055	COG1349	DNA-binding transcription factor activity
Pmu3358_08060	COG0247	lactate metabolic process
Pmu3358_08070	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
Pmu3358_08075	COG2271	Major facilitator Superfamily
Pmu3358_08080	COG0584	glycerophosphoryl diester phosphodiesterase
Pmu3358_08085	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Pmu3358_08100	COG2183	response to ionizing radiation
Pmu3358_08120	COG1584	GPR1 FUN34 yaaH family protein
Pmu3358_08125	COG1012	belongs to the aldehyde dehydrogenase family
Pmu3358_08125	COG1454	alcohol dehydrogenase
Pmu3358_08130	COG3842	ATPase activity
Pmu3358_08135	COG1178	ABC-type Fe3 transport system permease component
Pmu3358_08140	COG3842	ATPase activity
Pmu3358_08150	COG1840	ABC-type Fe3 transport system, periplasmic component
Pmu3358_08170	COG0512	Glutamine amidotransferase of anthranilate synthase
Pmu3358_08180	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
Pmu3358_08205	COG1881	PFAM PEBP family protein
Pmu3358_08210	COG1733	regulation of RNA biosynthetic process
Pmu3358_08220	COG1132	(ABC) transporter
Pmu3358_08225	COG4988	ABC transporter
Pmu3358_08230	COG0697	spore germination
Pmu3358_08235	COG0187	DNA topoisomerase II activity
Pmu3358_08255	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
Pmu3358_08260	COG0640	Transcriptional regulator
Pmu3358_08265	COG1494	fructose-1,6-bisphosphatase
Pmu3358_08340	COG1739	Uncharacterized protein family UPF0029
Pmu3358_08345	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Pmu3358_08365	COG2853	Lipoprotein
Pmu3358_08395	COG4942	peptidase
Pmu3358_08400	COG2861	carbohydrate metabolic process
Pmu3358_08415	COG0606	chelatase, subunit chli
Pmu3358_08425	COG2990	Protein conserved in bacteria
Pmu3358_08430	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
Pmu3358_08445	COG0742	ribosomal rna small subunit methyltransferase
Pmu3358_08465	COG0552	protein localization to endoplasmic reticulum
Pmu3358_08470	COG2884	Cell division ATP-binding protein ftsE
Pmu3358_08475	COG2177	Part of the ABC transporter FtsEX involved in
Pmu3358_08520	COG1012	belongs to the aldehyde dehydrogenase family
Pmu3358_08525	COG3384	dioxygenase
Pmu3358_08535	COG2814	Major facilitator Superfamily
Pmu3358_08540	COG3971	2-oxopent-4-enoate hydratase activity
Pmu3358_08565	COG0494	nUDIX hydrolase
Pmu3358_08570	COG1011	Hydrolase
Pmu3358_08575	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
Pmu3358_08585	COG1218	3'(2'),5'-bisphosphate nucleotidase
Pmu3358_08590	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
Pmu3358_08595	COG0363	glucosamine-6-phosphate deaminase activity
Pmu3358_08600	COG0625	glutathione transferase activity
Pmu3358_08625	COG1040	competence protein
Pmu3358_08635	COG3070	regulator of competence-specific genes
Pmu3358_08655	COG1215	transferase activity, transferring glycosyl groups
Pmu3358_08660	COG0569	domain protein
Pmu3358_08670	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
Pmu3358_08685	COG2841	Protein conserved in bacteria
Pmu3358_08690	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
Pmu3358_08705	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
Pmu3358_08710	COG1522	sequence-specific DNA binding
Pmu3358_08750	COG2095	MarC family integral membrane protein
Pmu3358_08765	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Pmu3358_08770	COG0471	metal ion transport
Pmu3358_08775	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Pmu3358_08780	COG1275	C4-dicarboxylate transporter malic acid transport protein
Pmu3358_08800	COG3850	Histidine kinase
Pmu3358_08805	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Pmu3358_08810	COG3062	negative regulation of establishment of protein localization
Pmu3358_08820	COG0437	4 iron, 4 sulfur cluster binding
Pmu3358_08825	COG0348	domain, Protein
Pmu3358_08830	COG3043	anaerobic respiration
Pmu3358_08835	COG3005	denitrification pathway
Pmu3358_08840	COG0758	DNA mediated transformation
Pmu3358_08850	COG2818	Glycosylase
Pmu3358_08875	COG0538	isocitrate dehydrogenase activity
Pmu3358_08910	COG1238	metal cluster binding
Pmu3358_08915	COG1388	LysM domain
Pmu3358_08915	COG4942	peptidase
Pmu3358_08940	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
Pmu3358_08975	COG1794	racemase activity, acting on amino acids and derivatives
Pmu3358_08980	COG3978	acetolactate synthase activity
Pmu3358_08990	COG0561	phosphatase activity
Pmu3358_09000	COG2267	carboxylic ester hydrolase activity
Pmu3358_09005	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
Pmu3358_09010	COG0561	phosphatase activity
Pmu3358_09015	COG0235	Class ii aldolase
Pmu3358_09020	COG3623	hexulose-6-phosphate isomerase
Pmu3358_09025	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
Pmu3358_09050	COG1129	ABC transporter
Pmu3358_09055	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Pmu3358_09060	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
Pmu3358_09065	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
Pmu3358_09070	COG2731	YhcH YjgK YiaL family protein
Pmu3358_09080	COG1414	Transcriptional regulator
Pmu3358_09090	COG0477	Major facilitator Superfamily
Pmu3358_09100	COG0351	phosphomethylpyrimidine kinase
Pmu3358_09110	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Pmu3358_09115	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
Pmu3358_09120	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Pmu3358_09125	COG1116	anion transmembrane transporter activity
Pmu3358_09140	COG0551	DNA topoisomerase type I activity
Pmu3358_09155	COG1070	Carbohydrate kinase
Pmu3358_09160	COG2390	Transcriptional regulator
Pmu3358_09165	COG1129	ABC transporter
Pmu3358_09210	COG0583	DNA-binding transcription factor activity
Pmu3358_09220	COG3956	TIGRFAM MazG family protein
Pmu3358_09240	COG1210	Utp--glucose-1-phosphate uridylyltransferase
Pmu3358_09255	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
Pmu3358_09260	COG2364	Membrane
Pmu3358_09265	COG0859	PFAM glycosyl transferase family 9
Pmu3358_09290	COG3069	C4-dicarboxylate transmembrane transporter activity
Pmu3358_09295	COG1473	amidohydrolase
Pmu3358_09305	COG4772	TonB-dependent receptor
Pmu3358_09315	COG1132	(ABC) transporter
Pmu3358_09320	COG0859	PFAM glycosyl transferase family 9
Pmu3358_09335	COG1519	Transferase
Pmu3358_09340	COG0463	Glycosyl transferase, family 2
Pmu3358_09355	COG1120	ATPase activity
Pmu3358_09360	COG0500	methyltransferase
Pmu3358_09370	COG0456	acetyltransferase
Pmu3358_09380	COG0762	integral membrane protein
Pmu3358_09390	COG3171	Protein conserved in bacteria
Pmu3358_09400	COG3038	cytochrome b561
Pmu3358_09405	COG1194	a g-specific adenine glycosylase
Pmu3358_09435	COG3056	Lipoprotein
Pmu3358_09440	COG0271	Belongs to the BolA IbaG family
Pmu3358_09445	COG1879	ABC-type sugar transport system periplasmic component
Pmu3358_09450	COG1129	ABC transporter
Pmu3358_09455	COG1172	Belongs to the binding-protein-dependent transport system permease family
Pmu3358_09490	COG1477	protein flavinylation
Pmu3358_09505	COG1230	cation diffusion facilitator family transporter
Pmu3358_09510	COG2271	Major facilitator Superfamily
Pmu3358_09520	COG2197	response regulator
Pmu3358_09525	COG2271	Major facilitator Superfamily
Pmu3358_09545	COG1309	transcriptional regulator
Pmu3358_09550	COG0583	DNA-binding transcription factor activity
Pmu3358_09555	COG0678	peroxiredoxin activity
Pmu3358_09555	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
Pmu3358_09565	COG0545	Peptidyl-prolyl cis-trans isomerase
Pmu3358_09570	COG2964	Protein conserved in bacteria
Pmu3358_09585	COG2168	tRNA wobble position uridine thiolation
Pmu3358_09605	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Pmu3358_09625	COG1929	Belongs to the glycerate kinase type-1 family
Pmu3358_09630	COG2610	gluconate transmembrane transporter activity
Pmu3358_09665	COG3068	Protein conserved in bacteria
Pmu3358_09725	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Pmu3358_09730	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Pmu3358_09735	COG0006	proline dipeptidase activity
Pmu3358_09755	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
Pmu3358_09790	COG1737	Transcriptional regulator
Pmu3358_09795	COG2731	YhcH YjgK YiaL family protein
Pmu3358_09830	COG4232	protein-disulfide reductase activity
Pmu3358_09860	COG1011	Hydrolase
Pmu3358_09870	COG0697	spore germination
Pmu3358_09875	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
Pmu3358_09895	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
Pmu3358_09905	COG0805	protein transport
Pmu3358_09945	COG1368	sulfuric ester hydrolase activity
Pmu3358_09950	COG3119	arylsulfatase activity
Pmu3358_09970	COG0641	radical SAM
Pmu3358_09975	COG1253	flavin adenine dinucleotide binding
Pmu3358_09985	COG0084	hydrolase, TatD family'
Pmu3358_09990	COG0470	DNA polymerase III
Pmu3358_10000	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
Pmu3358_10005	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Pmu3358_10015	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Pmu3358_10035	COG1555	photosystem II stabilization
Pmu3358_10055	COG0196	riboflavin kinase activity
Pmu3358_10060	COG0728	peptidoglycan biosynthetic process
Pmu3358_10080	COG0560	Phosphoserine phosphatase
Pmu3358_10100	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
Pmu3358_10100	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
Pmu3358_10110	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Pmu3358_10120	COG2376	Dihydroxyacetone kinase
Pmu3358_10125	COG1461	Dihydroxyacetone kinase
Pmu3358_10135	COG2390	Transcriptional regulator
Pmu3358_10140	COG0698	ribose 5-phosphate isomerase
Pmu3358_10145	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Pmu3358_10155	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
Pmu3358_10175	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Pmu3358_10185	COG0828	Belongs to the bacterial ribosomal protein bS21 family
Pmu3358_10205	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Pmu3358_10220	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Pmu3358_10230	COG4972	Pilus assembly protein
Pmu3358_10250	COG4796	Type ii and iii secretion system protein
Pmu3358_10265	COG0338	D12 class N6 adenine-specific DNA methyltransferase
Pmu3358_10270	COG4701	Protein of unknown function (DUF721)
Pmu3358_10285	COG0494	nUDIX hydrolase
Pmu3358_10295	COG1466	dna polymerase III delta subunit
Pmu3358_10300	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
Pmu3358_10325	COG2608	mercury ion transmembrane transporter activity
Pmu3358_10335	COG1305	Transglutaminase-like
Pmu3358_10350	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Pmu3358_10425	COG2226	methyltransferase
Pmu3358_10435	COG0814	amino acid
Pmu3358_10445	COG4783	chaperone-mediated protein folding
Pmu3358_10460	COG0848	biopolymer transport protein
Pmu3358_10465	COG0811	peptide transport
Pmu3358_10470	COG4536	flavin adenine dinucleotide binding
Pmu3358_10475	COG4137	Cytochrome C assembly protein
Pmu3358_10480	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
Pmu3358_10535	COG3739	integral membrane protein
Pmu3358_10545	COG1720	tRNA m6t6A37 methyltransferase activity
Pmu3358_10550	COG1575	Belongs to the MenA family. Type 1 subfamily
Pmu3358_10560	COG0471	metal ion transport
Pmu3358_10585	COG0230	Belongs to the bacterial ribosomal protein bL34 family
Pmu3358_10595	COG0592	DNA-directed DNA polymerase activity
Pmu3358_10605	COG2226	methyltransferase
Pmu3358_10630	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
Pmu3358_10660	COG3306	glycosyltransferase involved in LPS biosynthesis
Pmu3358_10675	COG1216	Glycosyl transferase, family 2
Pmu3358_10680	COG1442	glycosyl transferase family 8
Pmu3358_10685	COG0438	transferase activity, transferring glycosyl groups
Pmu3358_10690	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
Pmu3358_10825	COG1943	Transposase