Pmu3358_00060 SM00859 Semialdehyde dehydrogenase, NAD binding domain Pmu3358_00085 SM00316 Ribosomal protein S1-like RNA-binding domain Pmu3358_00085 SM00322 K homology RNA-binding domain Pmu3358_00090 SM00028 Tetratricopeptide repeats Pmu3358_00095 SM00487 DEAD-like helicases superfamily Pmu3358_00095 SM00490 helicase superfamily c-terminal domain Pmu3358_00105 SM00382 ATPases associated with a variety of cellular activities Pmu3358_00125 SM00883 Chaperonin 10 Kd subunit Pmu3358_00180 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Pmu3358_00195 SM00878 Biotin carboxylase C-terminal domain Pmu3358_00225 SM01211 Pmu3358_00225 Pmu3358_00255 SM00382 ATPases associated with a variety of cellular activities Pmu3358_00315 SM00927 DNA mismatch repair enzyme MutH Pmu3358_00325 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Pmu3358_00325 SM00474 3'-5' exonuclease Pmu3358_00325 SM00475 5'-3' exonuclease Pmu3358_00325 SM00482 DNA polymerase A domain Pmu3358_00380 SM01266 Pmu3358_00380 Pmu3358_00405 SM01130 Pmu3358_00405 Pmu3358_00460 SM00487 DEAD-like helicases superfamily Pmu3358_00460 SM00490 helicase superfamily c-terminal domain Pmu3358_00460 SM00982 Pmu3358_00460 Pmu3358_00460 SM01058 CarD-like/TRCF domain Pmu3358_00470 SM00382 ATPases associated with a variety of cellular activities Pmu3358_00480 SM00354 helix_turn _helix lactose operon repressor Pmu3358_00500 SM00116 Domain in cystathionine beta-synthase and other proteins. Pmu3358_00500 SM01091 Transporter associated domain Pmu3358_00510 SM00316 Ribosomal protein S1-like RNA-binding domain Pmu3358_00525 SM00562 Pmu3358_00525 Pmu3358_00535 SM00731 SprT homologues. Pmu3358_00545 SM00387 Histidine kinase-like ATPases Pmu3358_00580 SM00226 Low molecular weight phosphatase family Pmu3358_00650 SM00984 UDP binding domain Pmu3358_00660 SM00729 Elongator protein 3, MiaB family, Radical SAM Pmu3358_00665 SM00869 Autotransporter beta-domain Pmu3358_00685 SM00382 ATPases associated with a variety of cellular activities Pmu3358_00720 SM00363 S4 RNA-binding domain Pmu3358_00725 SM00316 Ribosomal protein S1-like RNA-binding domain Pmu3358_00740 SM00479 Pmu3358_00740 Pmu3358_00795 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Pmu3358_00800 SM00382 ATPases associated with a variety of cellular activities Pmu3358_00905 SM00382 ATPases associated with a variety of cellular activities Pmu3358_00970 SM00840 Pmu3358_00970 Pmu3358_01005 SM01235 Pmu3358_01005 Pmu3358_01010 SM00788 Adenylosuccinate synthetase Pmu3358_01065 SM00925 MltA specific insert domain Pmu3358_01090 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Pmu3358_01100 SM00072 Guanylate kinase homologues. Pmu3358_01105 SM01409 Pmu3358_01105 Pmu3358_01110 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Pmu3358_01110 SM00954 Region found in RelA / SpoT proteins Pmu3358_01115 SM00487 DEAD-like helicases superfamily Pmu3358_01115 SM00490 helicase superfamily c-terminal domain Pmu3358_01215 SM00650 Ribosomal RNA adenine dimethylases Pmu3358_01425 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Pmu3358_01425 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Pmu3358_01425 SM00493 Pmu3358_01425 Pmu3358_01500 SM00382 ATPases associated with a variety of cellular activities Pmu3358_01560 SM00382 ATPases associated with a variety of cellular activities Pmu3358_01590 SM01387 Pmu3358_01590 Pmu3358_01605 SM00981 Pmu3358_01605 Pmu3358_01640 SM00073 Histidine Phosphotransfer domain Pmu3358_01640 SM00387 Histidine kinase-like ATPases Pmu3358_01640 SM00388 His Kinase A (phosphoacceptor) domain Pmu3358_01640 SM00448 cheY-homologous receiver domain Pmu3358_01680 SM00271 DnaJ molecular chaperone homology domain Pmu3358_01765 SM00825 Beta-ketoacyl synthase Pmu3358_01780 SM00316 Ribosomal protein S1-like RNA-binding domain Pmu3358_01895 SM00382 ATPases associated with a variety of cellular activities Pmu3358_01915 SM00671 Sel1-like repeats. Pmu3358_01920 SM00434 DNA Topoisomerase IV Pmu3358_01925 SM00387 Histidine kinase-like ATPases Pmu3358_01925 SM00433 TopoisomeraseII Pmu3358_01965 SM00382 ATPases associated with a variety of cellular activities Pmu3358_01970 SM00729 Elongator protein 3, MiaB family, Radical SAM Pmu3358_01970 SM00876 Biotin and Thiamin Synthesis associated domain Pmu3358_01980 SM00478 endonuclease III Pmu3358_01980 SM00525 Pmu3358_01980 Pmu3358_01990 SM00900 Pmu3358_01990 Pmu3358_02030 SM00463 Small MutS-related domain Pmu3358_02045 SM00851 MGS-like domain Pmu3358_02070 SM00382 ATPases associated with a variety of cellular activities Pmu3358_02110 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Pmu3358_02125 SM00382 ATPases associated with a variety of cellular activities Pmu3358_02130 SM01005 Alanine racemase, C-terminal domain Pmu3358_02180 SM00382 ATPases associated with a variety of cellular activities Pmu3358_02205 SM00487 DEAD-like helicases superfamily Pmu3358_02205 SM00490 helicase superfamily c-terminal domain Pmu3358_02215 SM00387 Histidine kinase-like ATPases Pmu3358_02215 SM00388 His Kinase A (phosphoacceptor) domain Pmu3358_02220 SM00448 cheY-homologous receiver domain Pmu3358_02220 SM00862 Transcriptional regulatory protein, C terminal Pmu3358_02225 SM00382 ATPases associated with a variety of cellular activities Pmu3358_02250 SM00382 ATPases associated with a variety of cellular activities Pmu3358_02265 SM00855 Phosphoglycerate mutase family Pmu3358_02300 SM00382 ATPases associated with a variety of cellular activities Pmu3358_02360 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Pmu3358_02505 SM00860 SMI1 / KNR4 family Pmu3358_02525 SM00860 SMI1 / KNR4 family Pmu3358_02545 SM00860 SMI1 / KNR4 family Pmu3358_02635 SM00382 ATPases associated with a variety of cellular activities Pmu3358_02675 SM00116 Domain in cystathionine beta-synthase and other proteins. Pmu3358_02715 SM00861 Transketolase, pyrimidine binding domain Pmu3358_02740 SM00981 Pmu3358_02740 Pmu3358_02770 SM00642 Alpha-amylase domain Pmu3358_02775 SM00642 Alpha-amylase domain Pmu3358_02800 SM00354 helix_turn _helix lactose operon repressor Pmu3358_02820 SM00836 DALR anticodon binding domain Pmu3358_02820 SM01016 Arginyl tRNA synthetase N terminal dom Pmu3358_02840 SM00937 Pmu3358_02840 Pmu3358_02870 SM00382 ATPases associated with a variety of cellular activities Pmu3358_02925 SM00382 ATPases associated with a variety of cellular activities Pmu3358_02930 SM00382 ATPases associated with a variety of cellular activities Pmu3358_02945 SM00947 Carbonic anhydrase Pmu3358_03035 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Pmu3358_03055 SM00100 Cyclic nucleotide-monophosphate binding domain Pmu3358_03140 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Pmu3358_03140 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Pmu3358_03140 SM00493 Pmu3358_03140 Pmu3358_03145 SM00481 DNA polymerase alpha chain like domain Pmu3358_03160 SM01001 AIR carboxylase Pmu3358_03190 SM00729 Elongator protein 3, MiaB family, Radical SAM Pmu3358_03205 SM00411 bacterial (prokaryotic) histone like domain Pmu3358_03210 SM00873 B3/4 domain Pmu3358_03210 SM00874 tRNA synthetase B5 domain Pmu3358_03210 SM00896 Ferredoxin-fold anticodon binding domain Pmu3358_03235 SM00855 Phosphoglycerate mutase family Pmu3358_03310 SM00749 bacterial OsmY and nodulation domain Pmu3358_03340 SM00357 Cold shock protein domain Pmu3358_03360 SM01359 Pmu3358_03360 Pmu3358_03360 SM01360 Pmu3358_03360 Pmu3358_03370 SM00363 S4 RNA-binding domain Pmu3358_03385 SM00830 Chorismate mutase type II Pmu3358_03405 SM00100 Cyclic nucleotide-monophosphate binding domain Pmu3358_03405 SM00419 helix_turn_helix, cAMP Regulatory protein Pmu3358_03445 SM00014 Acid phosphatase homologues Pmu3358_03500 SM00849 Metallo-beta-lactamase superfamily Pmu3358_03545 SM00852 Probable molybdopterin binding domain Pmu3358_03585 SM00341 Helicase and RNase D C-terminal Pmu3358_03585 SM00474 3'-5' exonuclease Pmu3358_03605 SM00487 DEAD-like helicases superfamily Pmu3358_03605 SM00491 Pmu3358_03605 Pmu3358_03620 SM01103 Pmu3358_03620 Pmu3358_03685 SM00450 Rhodanese Homology Domain Pmu3358_03750 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Pmu3358_03780 SM00271 DnaJ molecular chaperone homology domain Pmu3358_03790 SM00382 ATPases associated with a variety of cellular activities Pmu3358_03815 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Pmu3358_03820 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Pmu3358_03845 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Pmu3358_03845 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Pmu3358_03860 SM00363 S4 RNA-binding domain Pmu3358_03890 SM00316 Ribosomal protein S1-like RNA-binding domain Pmu3358_03905 SM00420 helix_turn_helix, Deoxyribose operon repressor Pmu3358_03905 SM01134 Pmu3358_03905 Pmu3358_03925 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Pmu3358_03945 SM00382 ATPases associated with a variety of cellular activities Pmu3358_03945 SM00487 DEAD-like helicases superfamily Pmu3358_03945 SM00490 helicase superfamily c-terminal domain Pmu3358_03945 SM00847 Helicase associated domain (HA2) Add an annotation Pmu3358_03980 SM00984 UDP binding domain Pmu3358_04005 SM00382 ATPases associated with a variety of cellular activities Pmu3358_04060 SM00354 helix_turn _helix lactose operon repressor Pmu3358_04105 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Pmu3358_04110 SM00028 Tetratricopeptide repeats Pmu3358_04125 SM00411 bacterial (prokaryotic) histone like domain Pmu3358_04130 SM00316 Ribosomal protein S1-like RNA-binding domain Pmu3358_04340 SM00434 DNA Topoisomerase IV Pmu3358_04430 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Pmu3358_04430 SM00465 GIY-YIG type nucleases (URI domain) Pmu3358_04450 SM00382 ATPases associated with a variety of cellular activities Pmu3358_04455 SM00849 Metallo-beta-lactamase superfamily Pmu3358_04485 SM00354 helix_turn _helix lactose operon repressor Pmu3358_04505 SM00528 Domain in histone-like proteins of HNS family Pmu3358_04535 SM00382 ATPases associated with a variety of cellular activities Pmu3358_04540 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Pmu3358_04555 SM00318 Staphylococcal nuclease homologues Pmu3358_04595 SM00244 prohibitin homologues Pmu3358_04600 SM00382 ATPases associated with a variety of cellular activities Pmu3358_04650 SM00479 Pmu3358_04650 Pmu3358_04665 SM00257 Lysin motif Pmu3358_04665 SM00646 Pmu3358_04665 Pmu3358_04670 SM00853 MutL C terminal dimerisation domain Pmu3358_04670 SM01340 Pmu3358_04670 Pmu3358_04690 SM00382 ATPases associated with a variety of cellular activities Pmu3358_04720 SM00382 ATPases associated with a variety of cellular activities Pmu3358_04725 SM00382 ATPases associated with a variety of cellular activities Pmu3358_04730 SM00822 Pmu3358_04730 Pmu3358_04745 SM00116 Domain in cystathionine beta-synthase and other proteins. Pmu3358_04745 SM01240 Pmu3358_04745 Pmu3358_04780 SM00977 TilS substrate C-terminal domain Pmu3358_04810 SM00881 CoA binding domain Pmu3358_04830 SM00861 Transketolase, pyrimidine binding domain Pmu3358_04855 SM00849 Metallo-beta-lactamase superfamily Pmu3358_04870 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Pmu3358_04870 SM00245 tail specific protease Pmu3358_04875 SM00945 ProQ/FINO family Pmu3358_04895 SM00382 ATPases associated with a variety of cellular activities Pmu3358_04930 SM00382 ATPases associated with a variety of cellular activities Pmu3358_04940 SM00843 Pmu3358_04940 Pmu3358_04945 SM00344 helix_turn_helix ASNC type Pmu3358_04955 SM00382 ATPases associated with a variety of cellular activities Pmu3358_04960 SM01118 Pmu3358_04960 Pmu3358_04975 SM00287 Bacterial SH3 domain homologues Pmu3358_04980 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Pmu3358_04995 SM01400 Pmu3358_04995 Pmu3358_05005 SM00382 ATPases associated with a variety of cellular activities Pmu3358_05015 SM00382 ATPases associated with a variety of cellular activities Pmu3358_05020 SM00382 ATPases associated with a variety of cellular activities Pmu3358_05085 SM01323 Pmu3358_05085 Pmu3358_05105 SM01209 Pmu3358_05105 Pmu3358_05105 SM01210 Pmu3358_05105 Pmu3358_05115 SM00798 AICARFT/IMPCHase bienzyme Pmu3358_05115 SM00851 MGS-like domain Pmu3358_05135 SM00448 cheY-homologous receiver domain Pmu3358_05135 SM00862 Transcriptional regulatory protein, C terminal Pmu3358_05155 SM00387 Histidine kinase-like ATPases Pmu3358_05155 SM00388 His Kinase A (phosphoacceptor) domain Pmu3358_05160 SM00448 cheY-homologous receiver domain Pmu3358_05160 SM00862 Transcriptional regulatory protein, C terminal Pmu3358_05205 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Pmu3358_05205 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Pmu3358_05205 SM00493 Pmu3358_05205 Pmu3358_05210 SM00493 Pmu3358_05210 Pmu3358_05335 SM00357 Cold shock protein domain Pmu3358_05335 SM00955 Pmu3358_05335 Pmu3358_05370 SM00382 ATPases associated with a variety of cellular activities Pmu3358_05385 SM00382 ATPases associated with a variety of cellular activities Pmu3358_05405 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Pmu3358_05455 SM00894 Excalibur calcium-binding domain Pmu3358_05465 SM00382 ATPases associated with a variety of cellular activities Pmu3358_05485 SM00354 helix_turn _helix lactose operon repressor Pmu3358_05490 SM00830 Chorismate mutase type II Pmu3358_05505 SM00864 Tubulin/FtsZ family, GTPase domain Pmu3358_05505 SM00865 Tubulin/FtsZ family, C-terminal domain Pmu3358_05600 SM00382 ATPases associated with a variety of cellular activities Pmu3358_05620 SM00062 Bacterial periplasmic substrate-binding proteins Pmu3358_05620 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Pmu3358_05625 SM00382 ATPases associated with a variety of cellular activities Pmu3358_05650 SM00244 prohibitin homologues Pmu3358_05655 SM00244 prohibitin homologues Pmu3358_05730 SM00479 Pmu3358_05730 Pmu3358_05740 SM00382 ATPases associated with a variety of cellular activities Pmu3358_05755 SM00563 Phosphate acyltransferases Pmu3358_05770 SM00841 Elongation factor P, C-terminal Pmu3358_05770 SM01185 Pmu3358_05770 Pmu3358_05855 SM00644 Pmu3358_05855 Pmu3358_05890 SM00869 Autotransporter beta-domain Pmu3358_05945 SM00986 Uracil DNA glycosylase superfamily Pmu3358_05945 SM00987 UreE urease accessory protein, C-terminal domain Pmu3358_05965 SM00358 Double-stranded RNA binding motif Pmu3358_05965 SM00535 Ribonuclease III family Pmu3358_06030 SM00382 ATPases associated with a variety of cellular activities Pmu3358_06035 SM00345 helix_turn_helix gluconate operon transcriptional repressor Pmu3358_06050 SM00062 Bacterial periplasmic substrate-binding proteins Pmu3358_06060 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Pmu3358_06070 SM00382 ATPases associated with a variety of cellular activities Pmu3358_06080 SM00849 Metallo-beta-lactamase superfamily Pmu3358_06105 SM00481 DNA polymerase alpha chain like domain Pmu3358_06110 SM01060 Pmu3358_06110 Pmu3358_06205 SM00028 Tetratricopeptide repeats Pmu3358_06245 SM00382 ATPases associated with a variety of cellular activities Pmu3358_06265 SM00642 Alpha-amylase domain Pmu3358_06280 SM00354 helix_turn _helix lactose operon repressor Pmu3358_06290 SM00363 S4 RNA-binding domain Pmu3358_06295 SM00919 Malic enzyme, NAD binding domain Pmu3358_06295 SM01274 Pmu3358_06295 Pmu3358_06335 SM00028 Tetratricopeptide repeats Pmu3358_06350 SM00938 Nitrogen regulatory protein P-II Pmu3358_06355 SM00852 Probable molybdopterin binding domain Pmu3358_06365 SM00563 Phosphate acyltransferases Pmu3358_06405 SM00935 Outer membrane protein (OmpH-like) Pmu3358_06415 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Pmu3358_06460 SM00382 ATPases associated with a variety of cellular activities Pmu3358_06480 SM00382 ATPases associated with a variety of cellular activities Pmu3358_06480 SM00464 Found in ATP-dependent protease La (LON) Pmu3358_06485 SM00382 ATPases associated with a variety of cellular activities Pmu3358_06485 SM00994 ClpX C4-type zinc finger Pmu3358_06485 SM01086 C-terminal, D2-small domain, of ClpB protein Pmu3358_06500 SM00257 Lysin motif Pmu3358_06500 SM00749 bacterial OsmY and nodulation domain Pmu3358_06545 SM00420 helix_turn_helix, Deoxyribose operon repressor Pmu3358_06545 SM01134 Pmu3358_06545 Pmu3358_06550 SM00917 LeuA allosteric (dimerisation) domain Pmu3358_06555 SM01329 Pmu3358_06555 Pmu3358_06590 SM00316 Ribosomal protein S1-like RNA-binding domain Pmu3358_06590 SM00357 Cold shock protein domain Pmu3358_06590 SM00955 Pmu3358_06590 Pmu3358_06595 SM00967 RNA 2'-O ribose methyltransferase substrate binding Pmu3358_06645 SM00729 Elongator protein 3, MiaB family, Radical SAM Pmu3358_06660 SM00936 Penicillin-binding protein 5, C-terminal domain Pmu3358_06690 SM00487 DEAD-like helicases superfamily Pmu3358_06690 SM00490 helicase superfamily c-terminal domain Pmu3358_06695 SM00357 Cold shock protein domain Pmu3358_06695 SM00382 ATPases associated with a variety of cellular activities Pmu3358_06695 SM00959 Rho termination factor, N-terminal domain Pmu3358_06715 SM00822 Pmu3358_06715 Pmu3358_06720 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Pmu3358_06760 SM00382 ATPases associated with a variety of cellular activities Pmu3358_06765 SM00382 ATPases associated with a variety of cellular activities Pmu3358_06770 SM01057 Eukaryotic-type carbonic anhydrase Pmu3358_06815 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Pmu3358_06855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Pmu3358_06855 SM00387 Histidine kinase-like ATPases Pmu3358_06855 SM00388 His Kinase A (phosphoacceptor) domain Pmu3358_06905 SM00271 DnaJ molecular chaperone homology domain Pmu3358_06940 SM01192 Pmu3358_06940 Pmu3358_06940 SM01193 Pmu3358_06940 Pmu3358_06945 SM00732 Likely ribonuclease with RNase H fold. Pmu3358_06970 SM00954 Region found in RelA / SpoT proteins Pmu3358_07005 SM00967 RNA 2'-O ribose methyltransferase substrate binding Pmu3358_07010 SM00155 Phospholipase D. Active site motifs. Pmu3358_07050 SM00640 Glycosyl hydrolases family 32 Pmu3358_07055 SM00354 helix_turn _helix lactose operon repressor Pmu3358_07080 SM00487 DEAD-like helicases superfamily Pmu3358_07080 SM00490 helicase superfamily c-terminal domain Pmu3358_07095 SM00487 DEAD-like helicases superfamily Pmu3358_07095 SM00490 helicase superfamily c-terminal domain Pmu3358_07115 SM00729 Elongator protein 3, MiaB family, Radical SAM Pmu3358_07140 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Pmu3358_07140 SM00534 ATPase domain of DNA mismatch repair MUTS family Pmu3358_07150 SM00327 von Willebrand factor (vWF) type A domain Pmu3358_07175 SM00382 ATPases associated with a variety of cellular activities Pmu3358_07180 SM00327 von Willebrand factor (vWF) type A domain Pmu3358_07205 SM00382 ATPases associated with a variety of cellular activities Pmu3358_07240 SM00421 helix_turn_helix, Lux Regulon Pmu3358_07240 SM00448 cheY-homologous receiver domain Pmu3358_07380 SM01022 Pmu3358_07380 Pmu3358_07495 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Pmu3358_07520 SM00382 ATPases associated with a variety of cellular activities Pmu3358_07520 SM01086 C-terminal, D2-small domain, of ClpB protein Pmu3358_07580 SM01007 Class II Aldolase and Adducin N-terminal domain Pmu3358_07595 SM00420 helix_turn_helix, Deoxyribose operon repressor Pmu3358_07595 SM01134 Pmu3358_07595 Pmu3358_07615 SM00345 helix_turn_helix gluconate operon transcriptional repressor Pmu3358_07615 SM00895 Pmu3358_07615 Pmu3358_07695 SM00342 helix_turn_helix, arabinose operon control protein Pmu3358_07720 SM00448 cheY-homologous receiver domain Pmu3358_07720 SM00862 Transcriptional regulatory protein, C terminal Pmu3358_07735 SM00382 ATPases associated with a variety of cellular activities Pmu3358_07750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Pmu3358_07750 SM00387 Histidine kinase-like ATPases Pmu3358_07750 SM00388 His Kinase A (phosphoacceptor) domain Pmu3358_07750 SM00448 cheY-homologous receiver domain Pmu3358_07785 SM00530 Helix-turn-helix XRE-family like proteins Pmu3358_07800 SM00662 RNA polymerases D Pmu3358_07805 SM00363 S4 RNA-binding domain Pmu3358_07805 SM01390 Pmu3358_07805 Pmu3358_07870 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Pmu3358_07875 SM01374 Pmu3358_07875 Pmu3358_07895 SM00322 K homology RNA-binding domain Pmu3358_07910 SM01382 Pmu3358_07910 Pmu3358_07910 SM01383 Pmu3358_07910 Pmu3358_07930 SM01403 Pmu3358_07930 Pmu3358_07985 SM01219 Pmu3358_07985 Pmu3358_07995 SM00341 Helicase and RNase D C-terminal Pmu3358_07995 SM00487 DEAD-like helicases superfamily Pmu3358_07995 SM00490 helicase superfamily c-terminal domain Pmu3358_07995 SM00956 Pmu3358_07995 Pmu3358_08010 SM00971 Serine acetyltransferase, N-terminal Pmu3358_08025 SM00450 Rhodanese Homology Domain Pmu3358_08035 SM00382 ATPases associated with a variety of cellular activities Pmu3358_08040 SM00450 Rhodanese Homology Domain Pmu3358_08055 SM00420 helix_turn_helix, Deoxyribose operon repressor Pmu3358_08055 SM01134 Pmu3358_08055 Pmu3358_08095 SM01022 Pmu3358_08095 Pmu3358_08100 SM00316 Ribosomal protein S1-like RNA-binding domain Pmu3358_08100 SM00732 Likely ribonuclease with RNase H fold. Pmu3358_08130 SM00382 ATPases associated with a variety of cellular activities Pmu3358_08140 SM00382 ATPases associated with a variety of cellular activities Pmu3358_08155 SM00387 Histidine kinase-like ATPases Pmu3358_08155 SM00388 His Kinase A (phosphoacceptor) domain Pmu3358_08160 SM00448 cheY-homologous receiver domain Pmu3358_08220 SM00382 ATPases associated with a variety of cellular activities Pmu3358_08225 SM00382 ATPases associated with a variety of cellular activities Pmu3358_08235 SM00387 Histidine kinase-like ATPases Pmu3358_08235 SM00433 TopoisomeraseII Pmu3358_08250 SM00849 Metallo-beta-lactamase superfamily Pmu3358_08255 SM00450 Rhodanese Homology Domain Pmu3358_08260 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Pmu3358_08280 SM01228 Pmu3358_08280 Pmu3358_08325 SM00382 ATPases associated with a variety of cellular activities Pmu3358_08370 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Pmu3358_08385 SM00851 MGS-like domain Pmu3358_08385 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Pmu3358_08390 SM00855 Phosphoglycerate mutase family Pmu3358_08415 SM00382 ATPases associated with a variety of cellular activities Pmu3358_08465 SM00382 ATPases associated with a variety of cellular activities Pmu3358_08465 SM00962 SRP54-type protein, GTPase domain Pmu3358_08465 SM00963 SRP54-type protein, helical bundle domain Pmu3358_08470 SM00382 ATPases associated with a variety of cellular activities Pmu3358_08480 SM00903 Flavin reductase like domain Pmu3358_08490 SM00342 helix_turn_helix, arabinose operon control protein Pmu3358_08575 SM00363 S4 RNA-binding domain Pmu3358_08615 SM01350 Pmu3358_08615 Pmu3358_08690 SM00226 Low molecular weight phosphatase family Pmu3358_08700 SM00729 Elongator protein 3, MiaB family, Radical SAM Pmu3358_08710 SM00344 helix_turn_helix ASNC type Pmu3358_08775 SM00155 Phospholipase D. Active site motifs. Pmu3358_08800 SM00387 Histidine kinase-like ATPases Pmu3358_08815 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Pmu3358_08875 SM01329 Pmu3358_08875 Pmu3358_08900 SM00671 Sel1-like repeats. Pmu3358_08915 SM00257 Lysin motif Pmu3358_09005 SM00859 Semialdehyde dehydrogenase, NAD binding domain Pmu3358_09015 SM01007 Class II Aldolase and Adducin N-terminal domain Pmu3358_09025 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Pmu3358_09050 SM00382 ATPases associated with a variety of cellular activities Pmu3358_09080 SM00346 helix_turn_helix isocitrate lyase regulation Pmu3358_09125 SM00382 ATPases associated with a variety of cellular activities Pmu3358_09165 SM00382 ATPases associated with a variety of cellular activities Pmu3358_09185 SM01133 Pmu3358_09185 Pmu3358_09230 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Pmu3358_09300 SM00869 Autotransporter beta-domain Pmu3358_09315 SM00382 ATPases associated with a variety of cellular activities Pmu3358_09355 SM00382 ATPases associated with a variety of cellular activities Pmu3358_09375 SM01152 Pmu3358_09375 Pmu3358_09405 SM00478 endonuclease III Pmu3358_09405 SM00525 Pmu3358_09405 Pmu3358_09450 SM00382 ATPases associated with a variety of cellular activities Pmu3358_09470 SM00900 Pmu3358_09470 Pmu3358_09515 SM00387 Histidine kinase-like ATPases Pmu3358_09520 SM00421 helix_turn_helix, Lux Regulon Pmu3358_09520 SM00448 cheY-homologous receiver domain Pmu3358_09535 SM01133 Pmu3358_09535 Pmu3358_09600 SM00838 Elongation factor G C-terminus Pmu3358_09600 SM00889 Elongation factor G, domain IV Pmu3358_09610 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Pmu3358_09610 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Pmu3358_09615 SM00649 Ribosomal protein L11/L12 Pmu3358_09650 SM00663 RNA polymerase I subunit A N-terminus Pmu3358_09670 SM00411 bacterial (prokaryotic) histone like domain Pmu3358_09700 SM00382 ATPases associated with a variety of cellular activities Pmu3358_09700 SM00930 Pmu3358_09700 Pmu3358_09735 SM01011 Aminopeptidase P, N-terminal domain Pmu3358_09765 SM00363 S4 RNA-binding domain Pmu3358_09775 SM00869 Autotransporter beta-domain Pmu3358_09780 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Pmu3358_09780 SM00292 breast cancer carboxy-terminal domain Pmu3358_09780 SM00532 Ligase N family Pmu3358_09785 SM01130 Pmu3358_09785 Pmu3358_09840 SM00382 ATPases associated with a variety of cellular activities Pmu3358_09840 SM01086 C-terminal, D2-small domain, of ClpB protein Pmu3358_09875 SM00905 Dihydroneopterin aldolase Pmu3358_09880 SM01207 Pmu3358_09880 Pmu3358_09885 SM00771 ZipA, C-terminal domain (FtsZ-binding) Pmu3358_09900 SM01004 Delta-aminolevulinic acid dehydratase Pmu3358_09975 SM01091 Transporter associated domain Pmu3358_10015 SM00729 Elongator protein 3, MiaB family, Radical SAM Pmu3358_10055 SM00904 Riboflavin kinase Pmu3358_10125 SM01120 Pmu3358_10125 Pmu3358_10180 SM00400 zinc finger Pmu3358_10180 SM00493 Pmu3358_10180 Pmu3358_10180 SM00766 DNA primase DnaG DnaB-binding Pmu3358_10220 SM00345 helix_turn_helix gluconate operon transcriptional repressor Pmu3358_10280 SM00957 SecA DEAD-like domain Pmu3358_10280 SM00958 SecA preprotein cross-linking domain Pmu3358_10335 SM00460 Transglutaminase/protease-like homologues Pmu3358_10345 SM00650 Ribosomal RNA adenine dimethylases Pmu3358_10470 SM01091 Transporter associated domain Pmu3358_10480 SM00382 ATPases associated with a variety of cellular activities Pmu3358_10480 SM00962 SRP54-type protein, GTPase domain Pmu3358_10480 SM00963 SRP54-type protein, helical bundle domain Pmu3358_10485 SM00563 Phosphate acyltransferases Pmu3358_10520 SM01230 Pmu3358_10520 Pmu3358_10575 SM01234 Pmu3358_10575 Pmu3358_10590 SM00382 ATPases associated with a variety of cellular activities Pmu3358_10590 SM00760 Bacterial dnaA protein helix-turn-helix domain Pmu3358_10595 SM00480 DNA polymerase III beta subunit Pmu3358_10610 SM00100 Cyclic nucleotide-monophosphate binding domain Pmu3358_10610 SM00419 helix_turn_helix, cAMP Regulatory protein Pmu3358_10650 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Pmu3358_10650 SM01232 Pmu3358_10650 Pmu3358_10690 SM00487 DEAD-like helicases superfamily Pmu3358_10690 SM00490 helicase superfamily c-terminal domain Pmu3358_10825 SM01321 Pmu3358_10825