PhaeoP54_00015	PWY-7425	2-chloroacrylate degradation I
PhaeoP54_00047	PWY-5386	methylglyoxal degradation I
PhaeoP54_00055	PWY-5381	pyridine nucleotide cycling (plants)
PhaeoP54_00063	PWY-6654	phosphopantothenate biosynthesis III
PhaeoP54_00065	PWY-4261	glycerol degradation I
PhaeoP54_00067	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
PhaeoP54_00067	PWY-6174	mevalonate pathway II (archaea)
PhaeoP54_00067	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
PhaeoP54_00067	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
PhaeoP54_00067	PWY-7102	bisabolene biosynthesis
PhaeoP54_00067	PWY-7391	isoprene biosynthesis II (engineered)
PhaeoP54_00067	PWY-7524	mevalonate pathway III (archaea)
PhaeoP54_00067	PWY-7560	methylerythritol phosphate pathway II
PhaeoP54_00067	PWY-922	mevalonate pathway I
PhaeoP54_00069	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PhaeoP54_00082	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_00082	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PhaeoP54_00082	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PhaeoP54_00082	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_00099	PWY-4381	fatty acid biosynthesis initiation I
PhaeoP54_00099	PWY-5743	3-hydroxypropanoate cycle
PhaeoP54_00099	PWY-5744	glyoxylate assimilation
PhaeoP54_00099	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PhaeoP54_00099	PWY-6722	candicidin biosynthesis
PhaeoP54_00100	PWY-2161	folate polyglutamylation
PhaeoP54_00108	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PhaeoP54_00117	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
PhaeoP54_00117	PWY-5743	3-hydroxypropanoate cycle
PhaeoP54_00117	PWY-5744	glyoxylate assimilation
PhaeoP54_00117	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PhaeoP54_00117	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PhaeoP54_00117	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PhaeoP54_00117	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PhaeoP54_00120	PWY-2941	L-lysine biosynthesis II
PhaeoP54_00120	PWY-2942	L-lysine biosynthesis III
PhaeoP54_00120	PWY-5097	L-lysine biosynthesis VI
PhaeoP54_00120	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PhaeoP54_00120	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
PhaeoP54_00120	PWY-6559	spermidine biosynthesis II
PhaeoP54_00120	PWY-6562	norspermidine biosynthesis
PhaeoP54_00120	PWY-7153	grixazone biosynthesis
PhaeoP54_00120	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PhaeoP54_00120	PWY-7977	PhaeoP54_00120
PhaeoP54_00146	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PhaeoP54_00146	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PhaeoP54_00146	PWY-7953	PhaeoP54_00146
PhaeoP54_00190	PWY-5033	nicotinate degradation II
PhaeoP54_00190	PWY-6993	nicotine degradation II (pyrrolidine pathway)
PhaeoP54_00190	PWY-7128	nicotine degradation III (VPP pathway)
PhaeoP54_00190	PWY-722	nicotinate degradation I
PhaeoP54_00202	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
PhaeoP54_00202	PWY-5739	GDP-D-perosamine biosynthesis
PhaeoP54_00202	PWY-5740	GDP-L-colitose biosynthesis
PhaeoP54_00202	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
PhaeoP54_00202	PWY-7573	GDP-mycosamine biosynthesis
PhaeoP54_00221	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PhaeoP54_00221	PWY-3162	L-tryptophan degradation V (side chain pathway)
PhaeoP54_00221	PWY-5057	L-valine degradation II
PhaeoP54_00221	PWY-5076	L-leucine degradation III
PhaeoP54_00221	PWY-5078	L-isoleucine degradation II
PhaeoP54_00221	PWY-5079	L-phenylalanine degradation III
PhaeoP54_00221	PWY-5082	L-methionine degradation III
PhaeoP54_00221	PWY-5480	pyruvate fermentation to ethanol I
PhaeoP54_00221	PWY-5486	pyruvate fermentation to ethanol II
PhaeoP54_00221	PWY-5751	phenylethanol biosynthesis
PhaeoP54_00221	PWY-6313	serotonin degradation
PhaeoP54_00221	PWY-6333	acetaldehyde biosynthesis I
PhaeoP54_00221	PWY-6342	noradrenaline and adrenaline degradation
PhaeoP54_00221	PWY-6587	pyruvate fermentation to ethanol III
PhaeoP54_00221	PWY-6802	salidroside biosynthesis
PhaeoP54_00221	PWY-6871	3-methylbutanol biosynthesis
PhaeoP54_00221	PWY-7013	L-1,2-propanediol degradation
PhaeoP54_00221	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PhaeoP54_00221	PWY-7118	chitin degradation to ethanol
PhaeoP54_00221	PWY-7396	butanol and isobutanol biosynthesis (engineered)
PhaeoP54_00221	PWY-7798	PhaeoP54_00221
PhaeoP54_00225	PWY-6041	4-sulfocatechol degradation
PhaeoP54_00226	PWY-6041	4-sulfocatechol degradation
PhaeoP54_00248	PWY-1042	glycolysis IV (plant cytosol)
PhaeoP54_00248	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
PhaeoP54_00248	PWY-5484	glycolysis II (from fructose 6-phosphate)
PhaeoP54_00248	PWY-5723	Rubisco shunt
PhaeoP54_00248	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PhaeoP54_00248	PWY-6886	1-butanol autotrophic biosynthesis
PhaeoP54_00248	PWY-6901	superpathway of glucose and xylose degradation
PhaeoP54_00248	PWY-7003	glycerol degradation to butanol
PhaeoP54_00248	PWY-7124	ethylene biosynthesis V (engineered)
PhaeoP54_00248	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
PhaeoP54_00261	PWY-5269	cardiolipin biosynthesis II
PhaeoP54_00261	PWY-5668	cardiolipin biosynthesis I
PhaeoP54_00261	PWY-7817	PhaeoP54_00261
PhaeoP54_00263	PWY-6823	molybdenum cofactor biosynthesis
PhaeoP54_00263	PWY-7887	PhaeoP54_00263
PhaeoP54_00270	PWY-6840	homoglutathione biosynthesis
PhaeoP54_00270	PWY-7255	ergothioneine biosynthesis I (bacteria)
PhaeoP54_00277	PWY-5686	UMP biosynthesis
PhaeoP54_00277	PWY-7790	PhaeoP54_00277
PhaeoP54_00277	PWY-7791	PhaeoP54_00277
PhaeoP54_00289	PWY-3781	aerobic respiration I (cytochrome c)
PhaeoP54_00289	PWY-4521	arsenite oxidation I (respiratory)
PhaeoP54_00289	PWY-6692	Fe(II) oxidation
PhaeoP54_00289	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PhaeoP54_00294	PWY-5964	guanylyl molybdenum cofactor biosynthesis
PhaeoP54_00294	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
PhaeoP54_00297	PWY-6823	molybdenum cofactor biosynthesis
PhaeoP54_00305	PWY-7560	methylerythritol phosphate pathway II
PhaeoP54_00312	PWY-5676	acetyl-CoA fermentation to butanoate II
PhaeoP54_00312	PWY-5741	ethylmalonyl-CoA pathway
PhaeoP54_00312	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
PhaeoP54_00312	PWY-7948	PhaeoP54_00312
PhaeoP54_00318	PWY-4983	L-citrulline-nitric oxide cycle
PhaeoP54_00318	PWY-4984	urea cycle
PhaeoP54_00318	PWY-5	canavanine biosynthesis
PhaeoP54_00318	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PhaeoP54_00318	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PhaeoP54_00320	PWY-2941	L-lysine biosynthesis II
PhaeoP54_00320	PWY-2942	L-lysine biosynthesis III
PhaeoP54_00320	PWY-5097	L-lysine biosynthesis VI
PhaeoP54_00326	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
PhaeoP54_00326	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
PhaeoP54_00328	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
PhaeoP54_00328	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PhaeoP54_00330	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PhaeoP54_00331	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PhaeoP54_00332	PWY-5392	reductive TCA cycle II
PhaeoP54_00332	PWY-5537	pyruvate fermentation to acetate V
PhaeoP54_00332	PWY-5538	pyruvate fermentation to acetate VI
PhaeoP54_00332	PWY-5690	TCA cycle II (plants and fungi)
PhaeoP54_00332	PWY-5913	TCA cycle VI (obligate autotrophs)
PhaeoP54_00332	PWY-6728	methylaspartate cycle
PhaeoP54_00332	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PhaeoP54_00332	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PhaeoP54_00333	PWY-5392	reductive TCA cycle II
PhaeoP54_00333	PWY-5537	pyruvate fermentation to acetate V
PhaeoP54_00333	PWY-5538	pyruvate fermentation to acetate VI
PhaeoP54_00333	PWY-5690	TCA cycle II (plants and fungi)
PhaeoP54_00333	PWY-5913	TCA cycle VI (obligate autotrophs)
PhaeoP54_00333	PWY-6728	methylaspartate cycle
PhaeoP54_00333	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PhaeoP54_00333	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PhaeoP54_00335	PWY-1622	formaldehyde assimilation I (serine pathway)
PhaeoP54_00335	PWY-5392	reductive TCA cycle II
PhaeoP54_00335	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PhaeoP54_00335	PWY-5690	TCA cycle II (plants and fungi)
PhaeoP54_00335	PWY-5913	TCA cycle VI (obligate autotrophs)
PhaeoP54_00335	PWY-6728	methylaspartate cycle
PhaeoP54_00335	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PhaeoP54_00335	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PhaeoP54_00335	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PhaeoP54_00341	PWY-5741	ethylmalonyl-CoA pathway
PhaeoP54_00341	PWY-5744	glyoxylate assimilation
PhaeoP54_00341	PWY-6728	methylaspartate cycle
PhaeoP54_00341	PWY-7854	PhaeoP54_00341
PhaeoP54_00346	PWY-3781	aerobic respiration I (cytochrome c)
PhaeoP54_00346	PWY-4302	aerobic respiration III (alternative oxidase pathway)
PhaeoP54_00346	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PhaeoP54_00346	PWY-5690	TCA cycle II (plants and fungi)
PhaeoP54_00346	PWY-6728	methylaspartate cycle
PhaeoP54_00346	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PhaeoP54_00346	PWY-7254	TCA cycle VII (acetate-producers)
PhaeoP54_00346	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PhaeoP54_00349	PWY-3781	aerobic respiration I (cytochrome c)
PhaeoP54_00349	PWY-4302	aerobic respiration III (alternative oxidase pathway)
PhaeoP54_00349	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PhaeoP54_00349	PWY-5690	TCA cycle II (plants and fungi)
PhaeoP54_00349	PWY-6728	methylaspartate cycle
PhaeoP54_00349	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PhaeoP54_00349	PWY-7254	TCA cycle VII (acetate-producers)
PhaeoP54_00349	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PhaeoP54_00353	PWY-4202	arsenate detoxification I (glutaredoxin)
PhaeoP54_00353	PWY-5532	adenosine nucleotides degradation IV
PhaeoP54_00353	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PhaeoP54_00353	PWY-6608	guanosine nucleotides degradation III
PhaeoP54_00353	PWY-6609	adenine and adenosine salvage III
PhaeoP54_00353	PWY-6611	adenine and adenosine salvage V
PhaeoP54_00353	PWY-6620	guanine and guanosine salvage
PhaeoP54_00353	PWY-6627	salinosporamide A biosynthesis
PhaeoP54_00353	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
PhaeoP54_00353	PWY-7179	purine deoxyribonucleosides degradation I
PhaeoP54_00353	PWY-7179-1	purine deoxyribonucleosides degradation
PhaeoP54_00360	PWY-6157	autoinducer AI-1 biosynthesis
PhaeoP54_00380	PWY-1361	benzoyl-CoA degradation I (aerobic)
PhaeoP54_00380	PWY-2361	3-oxoadipate degradation
PhaeoP54_00380	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
PhaeoP54_00382	PWY-1361	benzoyl-CoA degradation I (aerobic)
PhaeoP54_00382	PWY-5109	2-methylbutanoate biosynthesis
PhaeoP54_00382	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
PhaeoP54_00382	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
PhaeoP54_00382	PWY-5177	glutaryl-CoA degradation
PhaeoP54_00382	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PhaeoP54_00382	PWY-6435	4-hydroxybenzoate biosynthesis V
PhaeoP54_00382	PWY-6583	pyruvate fermentation to butanol I
PhaeoP54_00382	PWY-6863	pyruvate fermentation to hexanol
PhaeoP54_00382	PWY-6883	pyruvate fermentation to butanol II
PhaeoP54_00382	PWY-6944	androstenedione degradation
PhaeoP54_00382	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
PhaeoP54_00382	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
PhaeoP54_00382	PWY-7007	methyl ketone biosynthesis
PhaeoP54_00382	PWY-7046	4-coumarate degradation (anaerobic)
PhaeoP54_00382	PWY-7094	fatty acid salvage
PhaeoP54_00382	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
PhaeoP54_00382	PWY-735	jasmonic acid biosynthesis
PhaeoP54_00382	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
PhaeoP54_00382	PWY-7606	docosahexaenoate biosynthesis III (mammals)
PhaeoP54_00382	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
PhaeoP54_00382	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
PhaeoP54_00382	PWY-7726	PhaeoP54_00382
PhaeoP54_00382	PWY-7778	PhaeoP54_00382
PhaeoP54_00382	PWY-7779	PhaeoP54_00382
PhaeoP54_00388	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PhaeoP54_00388	PWY-5723	Rubisco shunt
PhaeoP54_00395	PWY-7399	methylphosphonate degradation II
PhaeoP54_00395	PWY-7805	PhaeoP54_00395
PhaeoP54_00395	PWY-7807	PhaeoP54_00395
PhaeoP54_00399	PWY-7399	methylphosphonate degradation II
PhaeoP54_00399	PWY-7805	PhaeoP54_00399
PhaeoP54_00399	PWY-7807	PhaeoP54_00399
PhaeoP54_00401	PWY-7399	methylphosphonate degradation II
PhaeoP54_00401	PWY-7805	PhaeoP54_00401
PhaeoP54_00401	PWY-7807	PhaeoP54_00401
PhaeoP54_00402	PWY-7805	PhaeoP54_00402
PhaeoP54_00402	PWY-7807	PhaeoP54_00402
PhaeoP54_00403	PWY-7805	PhaeoP54_00403
PhaeoP54_00403	PWY-7807	PhaeoP54_00403
PhaeoP54_00404	PWY-7399	methylphosphonate degradation II
PhaeoP54_00404	PWY-7805	PhaeoP54_00404
PhaeoP54_00404	PWY-7807	PhaeoP54_00404
PhaeoP54_00407	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_00407	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PhaeoP54_00407	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PhaeoP54_00407	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_00411	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_00411	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PhaeoP54_00411	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PhaeoP54_00411	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_00428	PWY-6123	inosine-5'-phosphate biosynthesis I
PhaeoP54_00428	PWY-6124	inosine-5'-phosphate biosynthesis II
PhaeoP54_00428	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PhaeoP54_00428	PWY-7234	inosine-5'-phosphate biosynthesis III
PhaeoP54_00429	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
PhaeoP54_00433	PWY-7425	2-chloroacrylate degradation I
PhaeoP54_00435	PWY-723	alkylnitronates degradation
PhaeoP54_00436	PWY-5971	palmitate biosynthesis II (bacteria and plants)
PhaeoP54_00436	PWY-5973	<i>cis</i>-vaccenate biosynthesis
PhaeoP54_00436	PWY-5989	stearate biosynthesis II (bacteria and plants)
PhaeoP54_00436	PWY-6113	superpathway of mycolate biosynthesis
PhaeoP54_00436	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
PhaeoP54_00436	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PhaeoP54_00436	PWY-7663	gondoate biosynthesis (anaerobic)
PhaeoP54_00436	PWY-7664	oleate biosynthesis IV (anaerobic)
PhaeoP54_00436	PWY-7858	PhaeoP54_00436
PhaeoP54_00436	PWYG-321	mycolate biosynthesis
PhaeoP54_00438	PWY-5971	palmitate biosynthesis II (bacteria and plants)
PhaeoP54_00438	PWY-5973	<i>cis</i>-vaccenate biosynthesis
PhaeoP54_00438	PWY-5989	stearate biosynthesis II (bacteria and plants)
PhaeoP54_00438	PWY-5994	palmitate biosynthesis I (animals and fungi)
PhaeoP54_00438	PWY-6113	superpathway of mycolate biosynthesis
PhaeoP54_00438	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
PhaeoP54_00438	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PhaeoP54_00438	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PhaeoP54_00438	PWY-7663	gondoate biosynthesis (anaerobic)
PhaeoP54_00438	PWY-7664	oleate biosynthesis IV (anaerobic)
PhaeoP54_00438	PWY-7858	PhaeoP54_00438
PhaeoP54_00438	PWYG-321	mycolate biosynthesis
PhaeoP54_00451	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
PhaeoP54_00451	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
PhaeoP54_00454	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PhaeoP54_00455	PWY-7205	CMP phosphorylation
PhaeoP54_00463	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
PhaeoP54_00478	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
PhaeoP54_00478	PWY-7688	PhaeoP54_00478
PhaeoP54_00495	PWY-7130	L-glucose degradation
PhaeoP54_00504	PWY-6012	acyl carrier protein metabolism I
PhaeoP54_00504	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
PhaeoP54_00504	PWY-6289	petrobactin biosynthesis
PhaeoP54_00512	PWY-2722	trehalose degradation IV
PhaeoP54_00512	PWY-2723	trehalose degradation V
PhaeoP54_00512	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PhaeoP54_00512	PWY-5661	GDP-glucose biosynthesis
PhaeoP54_00512	PWY-621	sucrose degradation III (sucrose invertase)
PhaeoP54_00512	PWY-7238	sucrose biosynthesis II
PhaeoP54_00512	PWY-7385	1,3-propanediol biosynthesis (engineered)
PhaeoP54_00517	PWY-5691	urate degradation to allantoin I
PhaeoP54_00517	PWY-7394	urate degradation to allantoin II
PhaeoP54_00517	PWY-7849	PhaeoP54_00517
PhaeoP54_00518	PWY-5691	urate degradation to allantoin I
PhaeoP54_00518	PWY-7394	urate degradation to allantoin II
PhaeoP54_00518	PWY-7849	PhaeoP54_00518
PhaeoP54_00519	PWY-5694	allantoin degradation to glyoxylate I
PhaeoP54_00519	PWY-5705	allantoin degradation to glyoxylate III
PhaeoP54_00523	PWY-5692	allantoin degradation to glyoxylate II
PhaeoP54_00523	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
PhaeoP54_00526	PWY-381	nitrate reduction II (assimilatory)
PhaeoP54_00526	PWY-5675	nitrate reduction V (assimilatory)
PhaeoP54_00526	PWY-6549	L-glutamine biosynthesis III
PhaeoP54_00526	PWY-6963	ammonia assimilation cycle I
PhaeoP54_00526	PWY-6964	ammonia assimilation cycle II
PhaeoP54_00531	PWY-6703	preQ<sub>0</sub> biosynthesis
PhaeoP54_00533	PWY-6703	preQ<sub>0</sub> biosynthesis
PhaeoP54_00534	PWY-6700	queuosine biosynthesis
PhaeoP54_00545	PWY-6826	phosphatidylcholine biosynthesis VI
PhaeoP54_00549	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PhaeoP54_00549	PWY-5723	Rubisco shunt
PhaeoP54_00570	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
PhaeoP54_00570	PWY-2161	folate polyglutamylation
PhaeoP54_00570	PWY-2201	folate transformations I
PhaeoP54_00570	PWY-3841	folate transformations II
PhaeoP54_00571	PWY-3461	L-tyrosine biosynthesis II
PhaeoP54_00571	PWY-3462	L-phenylalanine biosynthesis II
PhaeoP54_00571	PWY-6120	L-tyrosine biosynthesis III
PhaeoP54_00571	PWY-6406	salicylate biosynthesis I
PhaeoP54_00571	PWY-6627	salinosporamide A biosynthesis
PhaeoP54_00571	PWY-7626	bacilysin biosynthesis
PhaeoP54_00572	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
PhaeoP54_00572	PWY-2201	folate transformations I
PhaeoP54_00572	PWY-3841	folate transformations II
PhaeoP54_00572	PWY-5030	L-histidine degradation III
PhaeoP54_00572	PWY-5497	purine nucleobases degradation II (anaerobic)
PhaeoP54_00572	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
PhaeoP54_00572	PWY-7909	PhaeoP54_00572
PhaeoP54_00608	PWY-6605	adenine and adenosine salvage II
PhaeoP54_00608	PWY-6610	adenine and adenosine salvage IV
PhaeoP54_00608	PWY-7805	PhaeoP54_00608
PhaeoP54_00608	PWY-7807	PhaeoP54_00608
PhaeoP54_00622	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
PhaeoP54_00622	PWY-6549	L-glutamine biosynthesis III
PhaeoP54_00622	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PhaeoP54_00622	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PhaeoP54_00624	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PhaeoP54_00624	PWY-6148	tetrahydromethanopterin biosynthesis
PhaeoP54_00624	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
PhaeoP54_00624	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PhaeoP54_00625	PWY-6614	tetrahydrofolate biosynthesis
PhaeoP54_00626	PWY-6749	CMP-legionaminate biosynthesis I
PhaeoP54_00629	PWY-5103	L-isoleucine biosynthesis III
PhaeoP54_00629	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PhaeoP54_00638	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PhaeoP54_00638	PWY-5686	UMP biosynthesis
PhaeoP54_00638	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PhaeoP54_00638	PWY-7790	PhaeoP54_00638
PhaeoP54_00638	PWY-7791	PhaeoP54_00638
PhaeoP54_00640	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
PhaeoP54_00642	PWY-3781	aerobic respiration I (cytochrome c)
PhaeoP54_00642	PWY-4521	arsenite oxidation I (respiratory)
PhaeoP54_00642	PWY-6692	Fe(II) oxidation
PhaeoP54_00642	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PhaeoP54_00645	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
PhaeoP54_00645	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
PhaeoP54_00658	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PhaeoP54_00658	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PhaeoP54_00658	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PhaeoP54_00658	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PhaeoP54_00658	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PhaeoP54_00658	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PhaeoP54_00658	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
PhaeoP54_00658	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
PhaeoP54_00661	PWY-1042	glycolysis IV (plant cytosol)
PhaeoP54_00661	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
PhaeoP54_00661	PWY-5484	glycolysis II (from fructose 6-phosphate)
PhaeoP54_00661	PWY-5723	Rubisco shunt
PhaeoP54_00661	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PhaeoP54_00661	PWY-6886	1-butanol autotrophic biosynthesis
PhaeoP54_00661	PWY-6901	superpathway of glucose and xylose degradation
PhaeoP54_00661	PWY-7003	glycerol degradation to butanol
PhaeoP54_00661	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
PhaeoP54_00661	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PhaeoP54_00687	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
PhaeoP54_00697	PWY-6807	xyloglucan degradation II (exoglucanase)
PhaeoP54_00699	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
PhaeoP54_00699	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
PhaeoP54_00699	PWY-7242	D-fructuronate degradation
PhaeoP54_00699	PWY-7310	D-glucosaminate degradation
PhaeoP54_00699	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
PhaeoP54_00700	PWY-7130	L-glucose degradation
PhaeoP54_00702	PWY-5101	L-isoleucine biosynthesis II
PhaeoP54_00702	PWY-5103	L-isoleucine biosynthesis III
PhaeoP54_00702	PWY-5104	L-isoleucine biosynthesis IV
PhaeoP54_00702	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PhaeoP54_00703	PWY-6527	stachyose degradation
PhaeoP54_00721	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PhaeoP54_00721	PWY-6269	adenosylcobalamin salvage from cobinamide II
PhaeoP54_00721	PWY-7961	PhaeoP54_00721
PhaeoP54_00721	PWY-7963	PhaeoP54_00721
PhaeoP54_00721	PWY-7964	PhaeoP54_00721
PhaeoP54_00721	PWY-7965	PhaeoP54_00721
PhaeoP54_00721	PWY-7966	PhaeoP54_00721
PhaeoP54_00721	PWY-7967	PhaeoP54_00721
PhaeoP54_00721	PWY-7968	PhaeoP54_00721
PhaeoP54_00721	PWY-7969	PhaeoP54_00721
PhaeoP54_00721	PWY-7970	PhaeoP54_00721
PhaeoP54_00721	PWY-7975	PhaeoP54_00721
PhaeoP54_00722	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PhaeoP54_00722	PWY-6269	adenosylcobalamin salvage from cobinamide II
PhaeoP54_00722	PWY-7964	PhaeoP54_00722
PhaeoP54_00722	PWY-7965	PhaeoP54_00722
PhaeoP54_00722	PWY-7966	PhaeoP54_00722
PhaeoP54_00722	PWY-7967	PhaeoP54_00722
PhaeoP54_00722	PWY-7968	PhaeoP54_00722
PhaeoP54_00722	PWY-7969	PhaeoP54_00722
PhaeoP54_00722	PWY-7970	PhaeoP54_00722
PhaeoP54_00733	PWY-6157	autoinducer AI-1 biosynthesis
PhaeoP54_00735	PWY-6637	sulfolactate degradation II
PhaeoP54_00735	PWY-6643	coenzyme M biosynthesis II
PhaeoP54_00736	PWY-6637	sulfolactate degradation II
PhaeoP54_00736	PWY-6643	coenzyme M biosynthesis II
PhaeoP54_00748	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PhaeoP54_00749	PWY-3121	linamarin degradation
PhaeoP54_00749	PWY-5176	coumarin biosynthesis (via 2-coumarate)
PhaeoP54_00749	PWY-6002	lotaustralin degradation
PhaeoP54_00749	PWY-6788	cellulose degradation II (fungi)
PhaeoP54_00749	PWY-7091	linustatin bioactivation
PhaeoP54_00749	PWY-7092	neolinustatin bioactivation
PhaeoP54_00749	PWY-7913	PhaeoP54_00749
PhaeoP54_00766	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PhaeoP54_00766	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PhaeoP54_00766	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PhaeoP54_00766	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
PhaeoP54_00766	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PhaeoP54_00766	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PhaeoP54_00767	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_00767	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_00770	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
PhaeoP54_00774	PWY-5194	siroheme biosynthesis
PhaeoP54_00774	PWY-5196	factor 430 biosynthesis
PhaeoP54_00774	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PhaeoP54_00776	PWY-5194	siroheme biosynthesis
PhaeoP54_00776	PWY-5196	factor 430 biosynthesis
PhaeoP54_00776	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PhaeoP54_00778	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PhaeoP54_00783	PWY-6683	sulfate reduction III (assimilatory)
PhaeoP54_00792	PWY-4261	glycerol degradation I
PhaeoP54_00792	PWY-6118	glycerol-3-phosphate shuttle
PhaeoP54_00792	PWY-6952	glycerophosphodiester degradation
PhaeoP54_00811	PWY-1361	benzoyl-CoA degradation I (aerobic)
PhaeoP54_00811	PWY-3602	L-carnitine degradation II
PhaeoP54_00811	PWY-5109	2-methylbutanoate biosynthesis
PhaeoP54_00811	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
PhaeoP54_00811	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
PhaeoP54_00811	PWY-5177	glutaryl-CoA degradation
PhaeoP54_00811	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PhaeoP54_00811	PWY-6435	4-hydroxybenzoate biosynthesis V
PhaeoP54_00811	PWY-6583	pyruvate fermentation to butanol I
PhaeoP54_00811	PWY-6863	pyruvate fermentation to hexanol
PhaeoP54_00811	PWY-6883	pyruvate fermentation to butanol II
PhaeoP54_00811	PWY-6944	androstenedione degradation
PhaeoP54_00811	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
PhaeoP54_00811	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
PhaeoP54_00811	PWY-7007	methyl ketone biosynthesis
PhaeoP54_00811	PWY-7046	4-coumarate degradation (anaerobic)
PhaeoP54_00811	PWY-7094	fatty acid salvage
PhaeoP54_00811	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
PhaeoP54_00811	PWY-735	jasmonic acid biosynthesis
PhaeoP54_00811	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
PhaeoP54_00811	PWY-7472	D-carnitine degradation II
PhaeoP54_00811	PWY-7606	docosahexaenoate biosynthesis III (mammals)
PhaeoP54_00811	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
PhaeoP54_00811	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
PhaeoP54_00811	PWY-7726	PhaeoP54_00811
PhaeoP54_00811	PWY-7778	PhaeoP54_00811
PhaeoP54_00811	PWY-7779	PhaeoP54_00811
PhaeoP54_00826	PWY-5250	methanogenesis from trimethylamine
PhaeoP54_00832	PWY-7805	PhaeoP54_00832
PhaeoP54_00832	PWY-7807	PhaeoP54_00832
PhaeoP54_00833	PWY-5484	glycolysis II (from fructose 6-phosphate)
PhaeoP54_00844	PWY-3661	glycine betaine degradation I
PhaeoP54_00844	PWY-4722	creatinine degradation II
PhaeoP54_00845	PWY-3661	glycine betaine degradation I
PhaeoP54_00845	PWY-4722	creatinine degradation II
PhaeoP54_00846	PWY-3661	glycine betaine degradation I
PhaeoP54_00846	PWY-4722	creatinine degradation II
PhaeoP54_00847	PWY-3661	glycine betaine degradation I
PhaeoP54_00847	PWY-4722	creatinine degradation II
PhaeoP54_00857	PWY-7991	PhaeoP54_00857
PhaeoP54_00861	PWY-6167	flavin biosynthesis II (archaea)
PhaeoP54_00861	PWY-6168	flavin biosynthesis III (fungi)
PhaeoP54_00861	PWY-7980	PhaeoP54_00861
PhaeoP54_00862	PWY-6167	flavin biosynthesis II (archaea)
PhaeoP54_00862	PWY-6168	flavin biosynthesis III (fungi)
PhaeoP54_00862	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PhaeoP54_00862	PWY-7991	PhaeoP54_00862
PhaeoP54_00863	PWY-6167	flavin biosynthesis II (archaea)
PhaeoP54_00863	PWY-6168	flavin biosynthesis III (fungi)
PhaeoP54_00875	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
PhaeoP54_00875	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
PhaeoP54_00875	PWY-6897	thiamin salvage II
PhaeoP54_00875	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
PhaeoP54_00875	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
PhaeoP54_00875	PWY-7356	thiamin salvage IV (yeast)
PhaeoP54_00875	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
PhaeoP54_00876	PWY-6891	thiazole biosynthesis II (Bacillus)
PhaeoP54_00876	PWY-6892	thiazole biosynthesis I (E. coli)
PhaeoP54_00878	PWY-7396	butanol and isobutanol biosynthesis (engineered)
PhaeoP54_00878	PWY-7806	PhaeoP54_00878
PhaeoP54_00879	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
PhaeoP54_00881	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
PhaeoP54_00883	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
PhaeoP54_00910	PWY-5750	itaconate biosynthesis
PhaeoP54_00910	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PhaeoP54_00910	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
PhaeoP54_00923	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PhaeoP54_00923	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PhaeoP54_00923	PWY-7953	PhaeoP54_00923
PhaeoP54_00924	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_00924	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PhaeoP54_00924	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_00926	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PhaeoP54_00926	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PhaeoP54_00930	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_00930	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PhaeoP54_00930	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PhaeoP54_00930	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_00931	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_00931	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PhaeoP54_00931	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PhaeoP54_00931	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_00932	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PhaeoP54_00932	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PhaeoP54_00932	PWY-7953	PhaeoP54_00932
PhaeoP54_00935	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PhaeoP54_00935	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PhaeoP54_00935	PWY-7953	PhaeoP54_00935
PhaeoP54_00936	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PhaeoP54_00936	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PhaeoP54_00936	PWY-7953	PhaeoP54_00936
PhaeoP54_00947	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
PhaeoP54_00948	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
PhaeoP54_00960	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PhaeoP54_00960	PWY-7118	chitin degradation to ethanol
PhaeoP54_00960	PWY-7294	xylose degradation IV
PhaeoP54_00960	PWY-7295	L-arabinose degradation IV
PhaeoP54_00960	PWY-7854	PhaeoP54_00960
PhaeoP54_00967	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
PhaeoP54_00967	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
PhaeoP54_00972	PWY-6825	phosphatidylcholine biosynthesis V
PhaeoP54_00984	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PhaeoP54_00989	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
PhaeoP54_00990	PWY-6823	molybdenum cofactor biosynthesis
PhaeoP54_00993	PWY-6749	CMP-legionaminate biosynthesis I
PhaeoP54_00994	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PhaeoP54_01002	PWY-4381	fatty acid biosynthesis initiation I
PhaeoP54_01002	PWY-5743	3-hydroxypropanoate cycle
PhaeoP54_01002	PWY-5744	glyoxylate assimilation
PhaeoP54_01002	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PhaeoP54_01002	PWY-6722	candicidin biosynthesis
PhaeoP54_01024	PWY-3781	aerobic respiration I (cytochrome c)
PhaeoP54_01024	PWY-4302	aerobic respiration III (alternative oxidase pathway)
PhaeoP54_01024	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
PhaeoP54_01024	PWY-6692	Fe(II) oxidation
PhaeoP54_01026	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
PhaeoP54_01026	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
PhaeoP54_01027	PWY-3961	phosphopantothenate biosynthesis II
PhaeoP54_01034	PWY-7352	daunorubicin biosynthesis
PhaeoP54_01034	PWY-7354	aclacinomycin biosynthesis
PhaeoP54_01049	PWY-5381	pyridine nucleotide cycling (plants)
PhaeoP54_01049	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PhaeoP54_01049	PWY-6596	adenosine nucleotides degradation I
PhaeoP54_01049	PWY-6606	guanosine nucleotides degradation II
PhaeoP54_01049	PWY-6607	guanosine nucleotides degradation I
PhaeoP54_01049	PWY-6608	guanosine nucleotides degradation III
PhaeoP54_01049	PWY-7185	UTP and CTP dephosphorylation I
PhaeoP54_01049	PWY-7821	PhaeoP54_01049
PhaeoP54_01054	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PhaeoP54_01054	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PhaeoP54_01054	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PhaeoP54_01054	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
PhaeoP54_01062	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PhaeoP54_01064	PWY-5686	UMP biosynthesis
PhaeoP54_01064	PWY-7790	PhaeoP54_01064
PhaeoP54_01064	PWY-7791	PhaeoP54_01064
PhaeoP54_01065	PWY-5686	UMP biosynthesis
PhaeoP54_01065	PWY-7790	PhaeoP54_01065
PhaeoP54_01065	PWY-7791	PhaeoP54_01065
PhaeoP54_01100	PWY-4381	fatty acid biosynthesis initiation I
PhaeoP54_01108	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PhaeoP54_01110	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PhaeoP54_01110	PWY-6578	8-amino-7-oxononanoate biosynthesis III
PhaeoP54_01110	PWY-7147	8-amino-7-oxononanoate biosynthesis II
PhaeoP54_01112	PWY-7883	PhaeoP54_01112
PhaeoP54_01120	PWY-1042	glycolysis IV (plant cytosol)
PhaeoP54_01120	PWY-1622	formaldehyde assimilation I (serine pathway)
PhaeoP54_01120	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
PhaeoP54_01120	PWY-5484	glycolysis II (from fructose 6-phosphate)
PhaeoP54_01120	PWY-5723	Rubisco shunt
PhaeoP54_01120	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PhaeoP54_01120	PWY-6886	1-butanol autotrophic biosynthesis
PhaeoP54_01120	PWY-6901	superpathway of glucose and xylose degradation
PhaeoP54_01120	PWY-7003	glycerol degradation to butanol
PhaeoP54_01120	PWY-7124	ethylene biosynthesis V (engineered)
PhaeoP54_01120	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
PhaeoP54_01130	PWY-381	nitrate reduction II (assimilatory)
PhaeoP54_01130	PWY-5675	nitrate reduction V (assimilatory)
PhaeoP54_01130	PWY-6549	L-glutamine biosynthesis III
PhaeoP54_01130	PWY-6963	ammonia assimilation cycle I
PhaeoP54_01130	PWY-6964	ammonia assimilation cycle II
PhaeoP54_01132	PWY-381	nitrate reduction II (assimilatory)
PhaeoP54_01132	PWY-5675	nitrate reduction V (assimilatory)
PhaeoP54_01132	PWY-6549	L-glutamine biosynthesis III
PhaeoP54_01132	PWY-6963	ammonia assimilation cycle I
PhaeoP54_01132	PWY-6964	ammonia assimilation cycle II
PhaeoP54_01149	PWY-2201	folate transformations I
PhaeoP54_01149	PWY-3841	folate transformations II
PhaeoP54_01151	PWY-2301	<i>myo</i>-inositol biosynthesis
PhaeoP54_01151	PWY-4702	phytate degradation I
PhaeoP54_01151	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
PhaeoP54_01152	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PhaeoP54_01154	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
PhaeoP54_01154	PWY-6853	ethylene biosynthesis II (microbes)
PhaeoP54_01154	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
PhaeoP54_01168	PWY-1622	formaldehyde assimilation I (serine pathway)
PhaeoP54_01168	PWY-181	photorespiration
PhaeoP54_01168	PWY-2161	folate polyglutamylation
PhaeoP54_01168	PWY-2201	folate transformations I
PhaeoP54_01168	PWY-3661	glycine betaine degradation I
PhaeoP54_01168	PWY-3661-1	glycine betaine degradation II (mammalian)
PhaeoP54_01168	PWY-3841	folate transformations II
PhaeoP54_01168	PWY-5497	purine nucleobases degradation II (anaerobic)
PhaeoP54_01169	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
PhaeoP54_01169	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PhaeoP54_01169	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
PhaeoP54_01170	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
PhaeoP54_01171	PWY-5108	L-isoleucine biosynthesis V
PhaeoP54_01171	PWY-5132	humulone biosynthesis
PhaeoP54_01171	PWY-5133	cohumulone biosynthesis
PhaeoP54_01171	PWY-6672	<i>cis</i>-genanyl-CoA degradation
PhaeoP54_01171	PWY-7118	chitin degradation to ethanol
PhaeoP54_01171	PWY-7857	PhaeoP54_01171
PhaeoP54_01172	PWY-1281	sulfoacetaldehyde degradation I
PhaeoP54_01172	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
PhaeoP54_01172	PWY-5482	pyruvate fermentation to acetate II
PhaeoP54_01172	PWY-5485	pyruvate fermentation to acetate IV
PhaeoP54_01172	PWY-5497	purine nucleobases degradation II (anaerobic)
PhaeoP54_01172	PWY-6637	sulfolactate degradation II
PhaeoP54_01172	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PhaeoP54_01174	PWY-6556	pyrimidine ribonucleosides salvage II
PhaeoP54_01174	PWY-7181	pyrimidine deoxyribonucleosides degradation
PhaeoP54_01174	PWY-7193	pyrimidine ribonucleosides salvage I
PhaeoP54_01174	PWY-7199	pyrimidine deoxyribonucleosides salvage
PhaeoP54_01175	PWY-7181	pyrimidine deoxyribonucleosides degradation
PhaeoP54_01176	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
PhaeoP54_01177	PWY-7183	pyrimidine nucleobases salvage I
PhaeoP54_01183	PWY-1361	benzoyl-CoA degradation I (aerobic)
PhaeoP54_01183	PWY-5109	2-methylbutanoate biosynthesis
PhaeoP54_01183	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
PhaeoP54_01183	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
PhaeoP54_01183	PWY-5177	glutaryl-CoA degradation
PhaeoP54_01183	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PhaeoP54_01183	PWY-6435	4-hydroxybenzoate biosynthesis V
PhaeoP54_01183	PWY-6583	pyruvate fermentation to butanol I
PhaeoP54_01183	PWY-6863	pyruvate fermentation to hexanol
PhaeoP54_01183	PWY-6883	pyruvate fermentation to butanol II
PhaeoP54_01183	PWY-6944	androstenedione degradation
PhaeoP54_01183	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
PhaeoP54_01183	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
PhaeoP54_01183	PWY-7007	methyl ketone biosynthesis
PhaeoP54_01183	PWY-7046	4-coumarate degradation (anaerobic)
PhaeoP54_01183	PWY-7094	fatty acid salvage
PhaeoP54_01183	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
PhaeoP54_01183	PWY-735	jasmonic acid biosynthesis
PhaeoP54_01183	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
PhaeoP54_01183	PWY-7606	docosahexaenoate biosynthesis III (mammals)
PhaeoP54_01183	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
PhaeoP54_01183	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
PhaeoP54_01183	PWY-7726	PhaeoP54_01183
PhaeoP54_01183	PWY-7778	PhaeoP54_01183
PhaeoP54_01183	PWY-7779	PhaeoP54_01183
PhaeoP54_01194	PWY-4202	arsenate detoxification I (glutaredoxin)
PhaeoP54_01194	PWY-4621	arsenate detoxification II (glutaredoxin)
PhaeoP54_01195	PWY-5686	UMP biosynthesis
PhaeoP54_01201	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
PhaeoP54_01210	PWY-5129	sphingolipid biosynthesis (plants)
PhaeoP54_01210	PWY-7836	PhaeoP54_01210
PhaeoP54_01210	PWY-7838	PhaeoP54_01210
PhaeoP54_01210	PWY-7839	PhaeoP54_01210
PhaeoP54_01210	PWY-7841	PhaeoP54_01210
PhaeoP54_01239	PWY-7801	PhaeoP54_01239
PhaeoP54_01273	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PhaeoP54_01274	PWY-5108	L-isoleucine biosynthesis V
PhaeoP54_01274	PWY-5132	humulone biosynthesis
PhaeoP54_01274	PWY-5133	cohumulone biosynthesis
PhaeoP54_01274	PWY-6672	<i>cis</i>-genanyl-CoA degradation
PhaeoP54_01274	PWY-7118	chitin degradation to ethanol
PhaeoP54_01274	PWY-7857	PhaeoP54_01274
PhaeoP54_01296	PWY-6531	mannitol cycle
PhaeoP54_01306	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PhaeoP54_01306	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PhaeoP54_01306	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PhaeoP54_01307	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PhaeoP54_01307	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
PhaeoP54_01320	PWY-6123	inosine-5'-phosphate biosynthesis I
PhaeoP54_01320	PWY-6124	inosine-5'-phosphate biosynthesis II
PhaeoP54_01320	PWY-7234	inosine-5'-phosphate biosynthesis III
PhaeoP54_01321	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PhaeoP54_01321	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PhaeoP54_01321	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PhaeoP54_01322	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PhaeoP54_01322	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PhaeoP54_01322	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PhaeoP54_01333	PWY-5392	reductive TCA cycle II
PhaeoP54_01333	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PhaeoP54_01333	PWY-5690	TCA cycle II (plants and fungi)
PhaeoP54_01333	PWY-5913	TCA cycle VI (obligate autotrophs)
PhaeoP54_01333	PWY-6728	methylaspartate cycle
PhaeoP54_01333	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PhaeoP54_01333	PWY-7254	TCA cycle VII (acetate-producers)
PhaeoP54_01333	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PhaeoP54_01342	PWY-4381	fatty acid biosynthesis initiation I
PhaeoP54_01348	PWY-4381	fatty acid biosynthesis initiation I
PhaeoP54_01352	PWY-4381	fatty acid biosynthesis initiation I
PhaeoP54_01361	PWY-6012	acyl carrier protein metabolism I
PhaeoP54_01361	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
PhaeoP54_01361	PWY-6289	petrobactin biosynthesis
PhaeoP54_01365	PWY-7352	daunorubicin biosynthesis
PhaeoP54_01365	PWY-7354	aclacinomycin biosynthesis
PhaeoP54_01381	PWY-4261	glycerol degradation I
PhaeoP54_01389	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PhaeoP54_01390	PWY-6164	3-dehydroquinate biosynthesis I
PhaeoP54_01400	PWY-2781	<i>cis</i>-zeatin biosynthesis
PhaeoP54_01404	PWY-5667	CDP-diacylglycerol biosynthesis I
PhaeoP54_01404	PWY-5981	CDP-diacylglycerol biosynthesis III
PhaeoP54_01404	PWY-7817	PhaeoP54_01404
PhaeoP54_01405	PWY-7560	methylerythritol phosphate pathway II
PhaeoP54_01410	PWY-5971	palmitate biosynthesis II (bacteria and plants)
PhaeoP54_01410	PWY-5973	<i>cis</i>-vaccenate biosynthesis
PhaeoP54_01410	PWY-5989	stearate biosynthesis II (bacteria and plants)
PhaeoP54_01410	PWY-5994	palmitate biosynthesis I (animals and fungi)
PhaeoP54_01410	PWY-6113	superpathway of mycolate biosynthesis
PhaeoP54_01410	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
PhaeoP54_01410	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PhaeoP54_01410	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PhaeoP54_01410	PWY-7663	gondoate biosynthesis (anaerobic)
PhaeoP54_01410	PWY-7664	oleate biosynthesis IV (anaerobic)
PhaeoP54_01410	PWY-7858	PhaeoP54_01410
PhaeoP54_01410	PWYG-321	mycolate biosynthesis
PhaeoP54_01414	PWY-7887	PhaeoP54_01414
PhaeoP54_01414	PWY-7892	PhaeoP54_01414
PhaeoP54_01427	PWY-5669	phosphatidylethanolamine biosynthesis I
PhaeoP54_01429	PWY-6834	spermidine biosynthesis III
PhaeoP54_01448	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PhaeoP54_01449	PWY-5250	methanogenesis from trimethylamine
PhaeoP54_01453	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
PhaeoP54_01453	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
PhaeoP54_01457	PWY-6599	guanine and guanosine salvage II
PhaeoP54_01457	PWY-6609	adenine and adenosine salvage III
PhaeoP54_01457	PWY-6610	adenine and adenosine salvage IV
PhaeoP54_01457	PWY-6620	guanine and guanosine salvage
PhaeoP54_01461	PWY-5269	cardiolipin biosynthesis II
PhaeoP54_01461	PWY-5668	cardiolipin biosynthesis I
PhaeoP54_01461	PWY-7817	PhaeoP54_01461
PhaeoP54_01462	PWY-7560	methylerythritol phosphate pathway II
PhaeoP54_01476	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PhaeoP54_01476	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
PhaeoP54_01491	PWY-6019	pseudouridine degradation
PhaeoP54_01495	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
PhaeoP54_01495	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
PhaeoP54_01495	PWY-6897	thiamin salvage II
PhaeoP54_01495	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
PhaeoP54_01495	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
PhaeoP54_01495	PWY-7356	thiamin salvage IV (yeast)
PhaeoP54_01495	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
PhaeoP54_01502	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PhaeoP54_01503	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PhaeoP54_01503	PWY-6855	chitin degradation I (archaea)
PhaeoP54_01503	PWY-6906	chitin derivatives degradation
PhaeoP54_01508	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PhaeoP54_01508	PWY-6596	adenosine nucleotides degradation I
PhaeoP54_01508	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PhaeoP54_01523	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
PhaeoP54_01531	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
PhaeoP54_01532	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
PhaeoP54_01539	PWY-3341	L-proline biosynthesis III
PhaeoP54_01539	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
PhaeoP54_01540	PWY-3341	L-proline biosynthesis III
PhaeoP54_01540	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
PhaeoP54_01548	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PhaeoP54_01548	PWY-6416	quinate degradation II
PhaeoP54_01548	PWY-6707	gallate biosynthesis
PhaeoP54_01550	PWY-723	alkylnitronates degradation
PhaeoP54_01569	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PhaeoP54_01572	PWY-6164	3-dehydroquinate biosynthesis I
PhaeoP54_01608	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
PhaeoP54_01608	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
PhaeoP54_01610	PWY-7533	gliotoxin biosynthesis
PhaeoP54_01621	PWY-31	canavanine degradation
PhaeoP54_01621	PWY-4984	urea cycle
PhaeoP54_01621	PWY-6305	putrescine biosynthesis IV
PhaeoP54_01621	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
PhaeoP54_01630	PWY-5101	L-isoleucine biosynthesis II
PhaeoP54_01630	PWY-6871	3-methylbutanol biosynthesis
PhaeoP54_01634	PWY-5250	methanogenesis from trimethylamine
PhaeoP54_01644	PWY-6891	thiazole biosynthesis II (Bacillus)
PhaeoP54_01644	PWY-6892	thiazole biosynthesis I (E. coli)
PhaeoP54_01644	PWY-7560	methylerythritol phosphate pathway II
PhaeoP54_01645	PWY-7793	PhaeoP54_01645
PhaeoP54_01660	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PhaeoP54_01660	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PhaeoP54_01660	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PhaeoP54_01660	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PhaeoP54_01660	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PhaeoP54_01660	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PhaeoP54_01660	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
PhaeoP54_01660	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
PhaeoP54_01664	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
PhaeoP54_01664	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
PhaeoP54_01665	PWY-5971	palmitate biosynthesis II (bacteria and plants)
PhaeoP54_01665	PWY-5973	<i>cis</i>-vaccenate biosynthesis
PhaeoP54_01665	PWY-5989	stearate biosynthesis II (bacteria and plants)
PhaeoP54_01665	PWY-6113	superpathway of mycolate biosynthesis
PhaeoP54_01665	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
PhaeoP54_01665	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PhaeoP54_01665	PWY-7663	gondoate biosynthesis (anaerobic)
PhaeoP54_01665	PWY-7664	oleate biosynthesis IV (anaerobic)
PhaeoP54_01665	PWY-7858	PhaeoP54_01665
PhaeoP54_01665	PWYG-321	mycolate biosynthesis
PhaeoP54_01670	PWY-5958	acridone alkaloid biosynthesis
PhaeoP54_01670	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
PhaeoP54_01670	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
PhaeoP54_01672	PWY-5958	acridone alkaloid biosynthesis
PhaeoP54_01672	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
PhaeoP54_01672	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
PhaeoP54_01676	PWY-6823	molybdenum cofactor biosynthesis
PhaeoP54_01677	PWY-6823	molybdenum cofactor biosynthesis
PhaeoP54_01680	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PhaeoP54_01689	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PhaeoP54_01689	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PhaeoP54_01690	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PhaeoP54_01690	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PhaeoP54_01695	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PhaeoP54_01695	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PhaeoP54_01695	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PhaeoP54_01704	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PhaeoP54_01704	PWY-5723	Rubisco shunt
PhaeoP54_01704	PWY-6891	thiazole biosynthesis II (Bacillus)
PhaeoP54_01704	PWY-6892	thiazole biosynthesis I (E. coli)
PhaeoP54_01704	PWY-6901	superpathway of glucose and xylose degradation
PhaeoP54_01704	PWY-7560	methylerythritol phosphate pathway II
PhaeoP54_01719	PWY-1042	glycolysis IV (plant cytosol)
PhaeoP54_01719	PWY-5484	glycolysis II (from fructose 6-phosphate)
PhaeoP54_01719	PWY-6901	superpathway of glucose and xylose degradation
PhaeoP54_01719	PWY-7003	glycerol degradation to butanol
PhaeoP54_01721	PWY-7851	PhaeoP54_01721
PhaeoP54_01724	PWY-5642	2,4-dinitrotoluene degradation
PhaeoP54_01727	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
PhaeoP54_01733	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
PhaeoP54_01733	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PhaeoP54_01736	PWY-6700	queuosine biosynthesis
PhaeoP54_01747	PWY-1042	glycolysis IV (plant cytosol)
PhaeoP54_01747	PWY-5484	glycolysis II (from fructose 6-phosphate)
PhaeoP54_01747	PWY-6886	1-butanol autotrophic biosynthesis
PhaeoP54_01747	PWY-6901	superpathway of glucose and xylose degradation
PhaeoP54_01747	PWY-7003	glycerol degradation to butanol
PhaeoP54_01754	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PhaeoP54_01763	PWY-6936	seleno-amino acid biosynthesis
PhaeoP54_01763	PWY-7274	D-cycloserine biosynthesis
PhaeoP54_01763	PWY-7870	PhaeoP54_01763
PhaeoP54_01788	PWY-5367	petroselinate biosynthesis
PhaeoP54_01788	PWY-5971	palmitate biosynthesis II (bacteria and plants)
PhaeoP54_01788	PWY-5973	<i>cis</i>-vaccenate biosynthesis
PhaeoP54_01788	PWY-5989	stearate biosynthesis II (bacteria and plants)
PhaeoP54_01788	PWY-5994	palmitate biosynthesis I (animals and fungi)
PhaeoP54_01788	PWY-6113	superpathway of mycolate biosynthesis
PhaeoP54_01788	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
PhaeoP54_01788	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PhaeoP54_01788	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PhaeoP54_01788	PWY-7663	gondoate biosynthesis (anaerobic)
PhaeoP54_01788	PWY-7664	oleate biosynthesis IV (anaerobic)
PhaeoP54_01788	PWY-7858	PhaeoP54_01788
PhaeoP54_01788	PWYG-321	mycolate biosynthesis
PhaeoP54_01789	PWY-4381	fatty acid biosynthesis initiation I
PhaeoP54_01789	PWY-6799	fatty acid biosynthesis (plant mitochondria)
PhaeoP54_01789	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PhaeoP54_01806	PWY-6938	NADH repair
PhaeoP54_01808	PWY-381	nitrate reduction II (assimilatory)
PhaeoP54_01808	PWY-5675	nitrate reduction V (assimilatory)
PhaeoP54_01808	PWY-6549	L-glutamine biosynthesis III
PhaeoP54_01808	PWY-6963	ammonia assimilation cycle I
PhaeoP54_01808	PWY-6964	ammonia assimilation cycle II
PhaeoP54_01814	PWY-6123	inosine-5'-phosphate biosynthesis I
PhaeoP54_01814	PWY-6124	inosine-5'-phosphate biosynthesis II
PhaeoP54_01814	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PhaeoP54_01814	PWY-7234	inosine-5'-phosphate biosynthesis III
PhaeoP54_01831	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
PhaeoP54_01845	PWY-6854	ethylene biosynthesis III (microbes)
PhaeoP54_01848	PWY-3661	glycine betaine degradation I
PhaeoP54_01848	PWY-4722	creatinine degradation II
PhaeoP54_01849	PWY-3661	glycine betaine degradation I
PhaeoP54_01849	PWY-4722	creatinine degradation II
PhaeoP54_01850	PWY-3661	glycine betaine degradation I
PhaeoP54_01850	PWY-4722	creatinine degradation II
PhaeoP54_01851	PWY-3661	glycine betaine degradation I
PhaeoP54_01851	PWY-4722	creatinine degradation II
PhaeoP54_01871	PWY-5659	GDP-mannose biosynthesis
PhaeoP54_01871	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
PhaeoP54_01875	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PhaeoP54_01875	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
PhaeoP54_01875	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PhaeoP54_01875	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PhaeoP54_01875	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
PhaeoP54_01875	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PhaeoP54_01875	PWY-7205	CMP phosphorylation
PhaeoP54_01875	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PhaeoP54_01875	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PhaeoP54_01875	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PhaeoP54_01875	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PhaeoP54_01875	PWY-7224	purine deoxyribonucleosides salvage
PhaeoP54_01875	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
PhaeoP54_01875	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
PhaeoP54_01893	PWY-40	putrescine biosynthesis I
PhaeoP54_01893	PWY-6305	putrescine biosynthesis IV
PhaeoP54_01894	PWY-40	putrescine biosynthesis I
PhaeoP54_01894	PWY-6305	putrescine biosynthesis IV
PhaeoP54_01913	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
PhaeoP54_01914	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
PhaeoP54_01914	PWY-5940	streptomycin biosynthesis
PhaeoP54_01925	PWY-7802	PhaeoP54_01925
PhaeoP54_01932	PWY-5101	L-isoleucine biosynthesis II
PhaeoP54_01932	PWY-5103	L-isoleucine biosynthesis III
PhaeoP54_01932	PWY-5104	L-isoleucine biosynthesis IV
PhaeoP54_01932	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
PhaeoP54_01932	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
PhaeoP54_01932	PWY-6389	(<i>S</i>)-acetoin biosynthesis
PhaeoP54_01932	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PhaeoP54_01933	PWY-5101	L-isoleucine biosynthesis II
PhaeoP54_01933	PWY-5103	L-isoleucine biosynthesis III
PhaeoP54_01933	PWY-5104	L-isoleucine biosynthesis IV
PhaeoP54_01933	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
PhaeoP54_01933	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
PhaeoP54_01933	PWY-6389	(<i>S</i>)-acetoin biosynthesis
PhaeoP54_01933	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PhaeoP54_01937	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
PhaeoP54_01939	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_01939	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PhaeoP54_01939	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PhaeoP54_01939	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_01947	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
PhaeoP54_01947	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
PhaeoP54_01966	PWY-6700	queuosine biosynthesis
PhaeoP54_01974	PWY-1042	glycolysis IV (plant cytosol)
PhaeoP54_01974	PWY-5484	glycolysis II (from fructose 6-phosphate)
PhaeoP54_01974	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PhaeoP54_01974	PWY-7003	glycerol degradation to butanol
PhaeoP54_01983	PWY-5194	siroheme biosynthesis
PhaeoP54_01983	PWY-5196	factor 430 biosynthesis
PhaeoP54_01983	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PhaeoP54_01985	PWY-6683	sulfate reduction III (assimilatory)
PhaeoP54_02025	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PhaeoP54_02025	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PhaeoP54_02026	PWY-7799	PhaeoP54_02026
PhaeoP54_02026	PWY-7800	PhaeoP54_02026
PhaeoP54_02027	PWY-3841	folate transformations II
PhaeoP54_02027	PWY-6614	tetrahydrofolate biosynthesis
PhaeoP54_02028	PWY-3841	folate transformations II
PhaeoP54_02028	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PhaeoP54_02028	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PhaeoP54_02028	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PhaeoP54_02028	PWY-7199	pyrimidine deoxyribonucleosides salvage
PhaeoP54_02028	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PhaeoP54_02031	PWY-5386	methylglyoxal degradation I
PhaeoP54_02073	PWY-4381	fatty acid biosynthesis initiation I
PhaeoP54_02073	PWY-5743	3-hydroxypropanoate cycle
PhaeoP54_02073	PWY-5744	glyoxylate assimilation
PhaeoP54_02073	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PhaeoP54_02073	PWY-6722	candicidin biosynthesis
PhaeoP54_02079	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
PhaeoP54_02079	PWY-7494	choline degradation IV
PhaeoP54_02080	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
PhaeoP54_02080	PWY-7494	choline degradation IV
PhaeoP54_02097	PWY-5497	purine nucleobases degradation II (anaerobic)
PhaeoP54_02097	PWY-6606	guanosine nucleotides degradation II
PhaeoP54_02097	PWY-6608	guanosine nucleotides degradation III
PhaeoP54_02097	PWY-7442	drosopterin and aurodrosopterin biosynthesis
PhaeoP54_02111	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
PhaeoP54_02188	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PhaeoP54_02200	PWY-381	nitrate reduction II (assimilatory)
PhaeoP54_02200	PWY-5675	nitrate reduction V (assimilatory)
PhaeoP54_02200	PWY-6549	L-glutamine biosynthesis III
PhaeoP54_02200	PWY-6963	ammonia assimilation cycle I
PhaeoP54_02200	PWY-6964	ammonia assimilation cycle II
PhaeoP54_02219	PWY-2941	L-lysine biosynthesis II
PhaeoP54_02219	PWY-2942	L-lysine biosynthesis III
PhaeoP54_02219	PWY-5097	L-lysine biosynthesis VI
PhaeoP54_02219	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
PhaeoP54_02219	PWY-6559	spermidine biosynthesis II
PhaeoP54_02219	PWY-6562	norspermidine biosynthesis
PhaeoP54_02219	PWY-7153	grixazone biosynthesis
PhaeoP54_02219	PWY-7977	PhaeoP54_02219
PhaeoP54_02222	PWY-5663	tetrahydrobiopterin biosynthesis I
PhaeoP54_02222	PWY-5664	tetrahydrobiopterin biosynthesis II
PhaeoP54_02222	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PhaeoP54_02222	PWY-6703	preQ<sub>0</sub> biosynthesis
PhaeoP54_02222	PWY-6983	tetrahydrobiopterin biosynthesis III
PhaeoP54_02222	PWY-7442	drosopterin and aurodrosopterin biosynthesis
PhaeoP54_02222	PWY-7852	PhaeoP54_02222
PhaeoP54_02231	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PhaeoP54_02231	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PhaeoP54_02231	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PhaeoP54_02242	PWY-4081	glutathione redox reactions I
PhaeoP54_02244	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PhaeoP54_02244	PWY-5723	Rubisco shunt
PhaeoP54_02249	PWY-6898	thiamin salvage III
PhaeoP54_02249	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
PhaeoP54_02249	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
PhaeoP54_02249	PWY-7356	thiamin salvage IV (yeast)
PhaeoP54_02252	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PhaeoP54_02269	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
PhaeoP54_02269	PWY-581	indole-3-acetate biosynthesis II
PhaeoP54_02269	PWY-7308	acrylonitrile degradation I
PhaeoP54_02270	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
PhaeoP54_02270	PWY-581	indole-3-acetate biosynthesis II
PhaeoP54_02270	PWY-7308	acrylonitrile degradation I
PhaeoP54_02271	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
PhaeoP54_02271	PWY-581	indole-3-acetate biosynthesis II
PhaeoP54_02271	PWY-7308	acrylonitrile degradation I
PhaeoP54_02273	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
PhaeoP54_02273	PWY-7177	UTP and CTP dephosphorylation II
PhaeoP54_02273	PWY-7185	UTP and CTP dephosphorylation I
PhaeoP54_02274	PWY-1042	glycolysis IV (plant cytosol)
PhaeoP54_02274	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PhaeoP54_02274	PWY-5484	glycolysis II (from fructose 6-phosphate)
PhaeoP54_02274	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PhaeoP54_02274	PWY-7385	1,3-propanediol biosynthesis (engineered)
PhaeoP54_02277	PWY-6832	2-aminoethylphosphonate degradation II
PhaeoP54_02305	PWY-4981	L-proline biosynthesis II (from arginine)
PhaeoP54_02305	PWY-4984	urea cycle
PhaeoP54_02305	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PhaeoP54_02316	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PhaeoP54_02316	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
PhaeoP54_02317	PWY-6749	CMP-legionaminate biosynthesis I
PhaeoP54_02320	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_02320	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PhaeoP54_02320	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PhaeoP54_02320	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_02332	PWY-5741	ethylmalonyl-CoA pathway
PhaeoP54_02332	PWY-5743	3-hydroxypropanoate cycle
PhaeoP54_02332	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PhaeoP54_02332	PWY-6728	methylaspartate cycle
PhaeoP54_02332	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PhaeoP54_02332	PWY-7854	PhaeoP54_02332
PhaeoP54_02340	PWY-5958	acridone alkaloid biosynthesis
PhaeoP54_02340	PWY-6543	4-aminobenzoate biosynthesis
PhaeoP54_02340	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
PhaeoP54_02340	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
PhaeoP54_02341	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PhaeoP54_02341	PWY-5686	UMP biosynthesis
PhaeoP54_02341	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PhaeoP54_02341	PWY-7790	PhaeoP54_02341
PhaeoP54_02341	PWY-7791	PhaeoP54_02341
PhaeoP54_02343	PWY-1622	formaldehyde assimilation I (serine pathway)
PhaeoP54_02343	PWY-181	photorespiration
PhaeoP54_02343	PWY-2161	folate polyglutamylation
PhaeoP54_02343	PWY-2201	folate transformations I
PhaeoP54_02343	PWY-3661	glycine betaine degradation I
PhaeoP54_02343	PWY-3661-1	glycine betaine degradation II (mammalian)
PhaeoP54_02343	PWY-3841	folate transformations II
PhaeoP54_02343	PWY-5497	purine nucleobases degradation II (anaerobic)
PhaeoP54_02348	PWY-4381	fatty acid biosynthesis initiation I
PhaeoP54_02351	PWY-7199	pyrimidine deoxyribonucleosides salvage
PhaeoP54_02354	PWY-3341	L-proline biosynthesis III
PhaeoP54_02354	PWY-4981	L-proline biosynthesis II (from arginine)
PhaeoP54_02354	PWY-6344	L-ornithine degradation II (Stickland reaction)
PhaeoP54_02365	PWY-5278	sulfite oxidation III
PhaeoP54_02365	PWY-5340	sulfate activation for sulfonation
PhaeoP54_02365	PWY-6683	sulfate reduction III (assimilatory)
PhaeoP54_02365	PWY-6932	selenate reduction
PhaeoP54_02371	PWY-6123	inosine-5'-phosphate biosynthesis I
PhaeoP54_02371	PWY-7234	inosine-5'-phosphate biosynthesis III
PhaeoP54_02373	PWY-7399	methylphosphonate degradation II
PhaeoP54_02373	PWY-7805	PhaeoP54_02373
PhaeoP54_02373	PWY-7807	PhaeoP54_02373
PhaeoP54_02380	PWY-7805	PhaeoP54_02380
PhaeoP54_02380	PWY-7807	PhaeoP54_02380
PhaeoP54_02384	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
PhaeoP54_02384	PWY-6167	flavin biosynthesis II (archaea)
PhaeoP54_02384	PWY-6168	flavin biosynthesis III (fungi)
PhaeoP54_02384	PWY-7863	PhaeoP54_02384
PhaeoP54_02391	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PhaeoP54_02394	PWY-7980	PhaeoP54_02394
PhaeoP54_02396	PWY-7980	PhaeoP54_02396
PhaeoP54_02399	PWY-5386	methylglyoxal degradation I
PhaeoP54_02405	PWY-7942	PhaeoP54_02405
PhaeoP54_02408	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
PhaeoP54_02419	PWY-3781	aerobic respiration I (cytochrome c)
PhaeoP54_02419	PWY-4521	arsenite oxidation I (respiratory)
PhaeoP54_02419	PWY-6692	Fe(II) oxidation
PhaeoP54_02419	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PhaeoP54_02426	PWY-3781	aerobic respiration I (cytochrome c)
PhaeoP54_02426	PWY-4521	arsenite oxidation I (respiratory)
PhaeoP54_02426	PWY-6692	Fe(II) oxidation
PhaeoP54_02426	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PhaeoP54_02436	PWY-3341	L-proline biosynthesis III
PhaeoP54_02436	PWY-4981	L-proline biosynthesis II (from arginine)
PhaeoP54_02436	PWY-6344	L-ornithine degradation II (Stickland reaction)
PhaeoP54_02476	PWY-1881	formate oxidation to CO<sub>2</sub>
PhaeoP54_02476	PWY-5497	purine nucleobases degradation II (anaerobic)
PhaeoP54_02476	PWY-6696	oxalate degradation III
PhaeoP54_02476	PWY-7985	PhaeoP54_02476
PhaeoP54_02520	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PhaeoP54_02523	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_02523	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_02525	PWY-5381	pyridine nucleotide cycling (plants)
PhaeoP54_02525	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
PhaeoP54_02525	PWY-7761	PhaeoP54_02525
PhaeoP54_02542	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PhaeoP54_02544	PWY-5381	pyridine nucleotide cycling (plants)
PhaeoP54_02544	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
PhaeoP54_02544	PWY-7761	PhaeoP54_02544
PhaeoP54_02546	PWY-6871	3-methylbutanol biosynthesis
PhaeoP54_02548	PWY-43	putrescine biosynthesis II
PhaeoP54_02552	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_02552	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_02553	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_02553	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PhaeoP54_02553	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PhaeoP54_02553	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_02563	PWY-7851	PhaeoP54_02563
PhaeoP54_02566	PWY-6269	adenosylcobalamin salvage from cobinamide II
PhaeoP54_02566	PWY-7962	PhaeoP54_02566
PhaeoP54_02566	PWY-7971	PhaeoP54_02566
PhaeoP54_02566	PWY-7972	PhaeoP54_02566
PhaeoP54_02580	PWY-1341	phenylacetate degradation II (anaerobic)
PhaeoP54_02580	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
PhaeoP54_02580	PWY-7716	PhaeoP54_02580
PhaeoP54_02620	PWY-381	nitrate reduction II (assimilatory)
PhaeoP54_02620	PWY-5675	nitrate reduction V (assimilatory)
PhaeoP54_02620	PWY-6549	L-glutamine biosynthesis III
PhaeoP54_02620	PWY-6963	ammonia assimilation cycle I
PhaeoP54_02620	PWY-6964	ammonia assimilation cycle II
PhaeoP54_02639	PWY-7352	daunorubicin biosynthesis
PhaeoP54_02639	PWY-7354	aclacinomycin biosynthesis
PhaeoP54_02641	PWY-7352	daunorubicin biosynthesis
PhaeoP54_02641	PWY-7354	aclacinomycin biosynthesis
PhaeoP54_02644	PWY-7352	daunorubicin biosynthesis
PhaeoP54_02644	PWY-7354	aclacinomycin biosynthesis
PhaeoP54_02646	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
PhaeoP54_02646	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
PhaeoP54_02646	PWY-6936	seleno-amino acid biosynthesis
PhaeoP54_02646	PWY-702	L-methionine biosynthesis II
PhaeoP54_02651	PWY-1042	glycolysis IV (plant cytosol)
PhaeoP54_02651	PWY-5484	glycolysis II (from fructose 6-phosphate)
PhaeoP54_02651	PWY-6901	superpathway of glucose and xylose degradation
PhaeoP54_02651	PWY-7003	glycerol degradation to butanol
PhaeoP54_02676	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
PhaeoP54_02676	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
PhaeoP54_02681	PWY-5316	nicotine biosynthesis
PhaeoP54_02681	PWY-7342	superpathway of nicotine biosynthesis
PhaeoP54_02683	PWY-5316	nicotine biosynthesis
PhaeoP54_02683	PWY-5381	pyridine nucleotide cycling (plants)
PhaeoP54_02683	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
PhaeoP54_02683	PWY-7342	superpathway of nicotine biosynthesis
PhaeoP54_02690	PWY-6906	chitin derivatives degradation
PhaeoP54_02690	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
PhaeoP54_02690	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
PhaeoP54_02700	PWY-3801	sucrose degradation II (sucrose synthase)
PhaeoP54_02700	PWY-5054	sorbitol biosynthesis I
PhaeoP54_02700	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
PhaeoP54_02700	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PhaeoP54_02700	PWY-5659	GDP-mannose biosynthesis
PhaeoP54_02700	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PhaeoP54_02700	PWY-621	sucrose degradation III (sucrose invertase)
PhaeoP54_02700	PWY-622	starch biosynthesis
PhaeoP54_02700	PWY-6981	chitin biosynthesis
PhaeoP54_02700	PWY-6992	1,5-anhydrofructose degradation
PhaeoP54_02700	PWY-7238	sucrose biosynthesis II
PhaeoP54_02700	PWY-7347	sucrose biosynthesis III
PhaeoP54_02700	PWY-7385	1,3-propanediol biosynthesis (engineered)
PhaeoP54_02701	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PhaeoP54_02702	PWY-5101	L-isoleucine biosynthesis II
PhaeoP54_02702	PWY-5103	L-isoleucine biosynthesis III
PhaeoP54_02702	PWY-5104	L-isoleucine biosynthesis IV
PhaeoP54_02702	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PhaeoP54_02703	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
PhaeoP54_02703	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
PhaeoP54_02703	PWY-7242	D-fructuronate degradation
PhaeoP54_02703	PWY-7310	D-glucosaminate degradation
PhaeoP54_02703	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
PhaeoP54_02704	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PhaeoP54_02714	PWY-5497	purine nucleobases degradation II (anaerobic)
PhaeoP54_02714	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PhaeoP54_02714	PWY-6538	caffeine degradation III (bacteria, via demethylation)
PhaeoP54_02714	PWY-6596	adenosine nucleotides degradation I
PhaeoP54_02714	PWY-6606	guanosine nucleotides degradation II
PhaeoP54_02714	PWY-6607	guanosine nucleotides degradation I
PhaeoP54_02714	PWY-6608	guanosine nucleotides degradation III
PhaeoP54_02714	PWY-6999	theophylline degradation
PhaeoP54_02715	PWY-5497	purine nucleobases degradation II (anaerobic)
PhaeoP54_02715	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PhaeoP54_02715	PWY-6538	caffeine degradation III (bacteria, via demethylation)
PhaeoP54_02715	PWY-6596	adenosine nucleotides degradation I
PhaeoP54_02715	PWY-6606	guanosine nucleotides degradation II
PhaeoP54_02715	PWY-6607	guanosine nucleotides degradation I
PhaeoP54_02715	PWY-6608	guanosine nucleotides degradation III
PhaeoP54_02715	PWY-6999	theophylline degradation
PhaeoP54_02729	PWY-4041	&gamma;-glutamyl cycle
PhaeoP54_02729	PWY-4061	glutathione-mediated detoxification I
PhaeoP54_02729	PWY-5826	hypoglycin biosynthesis
PhaeoP54_02729	PWY-6842	glutathione-mediated detoxification II
PhaeoP54_02729	PWY-7112	4-hydroxy-2-nonenal detoxification
PhaeoP54_02729	PWY-7559	glutathione degradation (DUG pathway - yeast)
PhaeoP54_02738	PWY-5913	TCA cycle VI (obligate autotrophs)
PhaeoP54_02738	PWY-6549	L-glutamine biosynthesis III
PhaeoP54_02738	PWY-6728	methylaspartate cycle
PhaeoP54_02738	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PhaeoP54_02738	PWY-7124	ethylene biosynthesis V (engineered)
PhaeoP54_02738	PWY-7254	TCA cycle VII (acetate-producers)
PhaeoP54_02738	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PhaeoP54_02768	PWY-4041	&gamma;-glutamyl cycle
PhaeoP54_02768	PWY-7942	PhaeoP54_02768
PhaeoP54_02780	PWY-1281	sulfoacetaldehyde degradation I
PhaeoP54_02780	PWY-6637	sulfolactate degradation II
PhaeoP54_02782	PWY-5482	pyruvate fermentation to acetate II
PhaeoP54_02782	PWY-5485	pyruvate fermentation to acetate IV
PhaeoP54_02782	PWY-5497	purine nucleobases degradation II (anaerobic)
PhaeoP54_02783	PWY-1281	sulfoacetaldehyde degradation I
PhaeoP54_02783	PWY-5482	pyruvate fermentation to acetate II
PhaeoP54_02783	PWY-5485	pyruvate fermentation to acetate IV
PhaeoP54_02783	PWY-5497	purine nucleobases degradation II (anaerobic)
PhaeoP54_02783	PWY-6637	sulfolactate degradation II
PhaeoP54_02790	PWY-2941	L-lysine biosynthesis II
PhaeoP54_02790	PWY-2942	L-lysine biosynthesis III
PhaeoP54_02790	PWY-5097	L-lysine biosynthesis VI
PhaeoP54_02793	PWY-7892	PhaeoP54_02793
PhaeoP54_02820	PWY-7799	PhaeoP54_02820
PhaeoP54_02820	PWY-7800	PhaeoP54_02820
PhaeoP54_02825	PWY-7158	L-phenylalanine degradation V
PhaeoP54_02834	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_02834	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PhaeoP54_02834	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PhaeoP54_02834	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_02837	PWY-5913	TCA cycle VI (obligate autotrophs)
PhaeoP54_02837	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
PhaeoP54_02837	PWY-6638	sulfolactate degradation III
PhaeoP54_02837	PWY-6642	(<i>R</i>)-cysteate degradation
PhaeoP54_02837	PWY-6643	coenzyme M biosynthesis II
PhaeoP54_02837	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PhaeoP54_02837	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PhaeoP54_02837	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PhaeoP54_02838	PWY-5350	thiosulfate disproportionation III (rhodanese)
PhaeoP54_02838	PWY-7927	PhaeoP54_02838
PhaeoP54_02844	PWY-5101	L-isoleucine biosynthesis II
PhaeoP54_02844	PWY-5103	L-isoleucine biosynthesis III
PhaeoP54_02844	PWY-5104	L-isoleucine biosynthesis IV
PhaeoP54_02844	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PhaeoP54_02877	PWY-7396	butanol and isobutanol biosynthesis (engineered)
PhaeoP54_02888	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PhaeoP54_02888	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PhaeoP54_02888	PWY-7766	PhaeoP54_02888
PhaeoP54_02889	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PhaeoP54_02889	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
PhaeoP54_02891	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PhaeoP54_02906	PWY-3781	aerobic respiration I (cytochrome c)
PhaeoP54_02906	PWY-4521	arsenite oxidation I (respiratory)
PhaeoP54_02906	PWY-6692	Fe(II) oxidation
PhaeoP54_02906	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PhaeoP54_02914	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
PhaeoP54_02916	PWY-5381	pyridine nucleotide cycling (plants)
PhaeoP54_02916	PWY-7761	PhaeoP54_02916
PhaeoP54_02948	PWY-4381	fatty acid biosynthesis initiation I
PhaeoP54_02948	PWY-5743	3-hydroxypropanoate cycle
PhaeoP54_02948	PWY-5744	glyoxylate assimilation
PhaeoP54_02948	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PhaeoP54_02948	PWY-6722	candicidin biosynthesis
PhaeoP54_02960	PWY-381	nitrate reduction II (assimilatory)
PhaeoP54_02960	PWY-5675	nitrate reduction V (assimilatory)
PhaeoP54_02960	PWY-6549	L-glutamine biosynthesis III
PhaeoP54_02960	PWY-6963	ammonia assimilation cycle I
PhaeoP54_02960	PWY-6964	ammonia assimilation cycle II
PhaeoP54_02985	PWY-5963	thio-molybdenum cofactor biosynthesis
PhaeoP54_02988	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PhaeoP54_02988	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PhaeoP54_03006	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PhaeoP54_03061	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
PhaeoP54_03074	PWY-1361	benzoyl-CoA degradation I (aerobic)
PhaeoP54_03074	PWY-5109	2-methylbutanoate biosynthesis
PhaeoP54_03074	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
PhaeoP54_03074	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
PhaeoP54_03074	PWY-5177	glutaryl-CoA degradation
PhaeoP54_03074	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PhaeoP54_03074	PWY-6435	4-hydroxybenzoate biosynthesis V
PhaeoP54_03074	PWY-6583	pyruvate fermentation to butanol I
PhaeoP54_03074	PWY-6863	pyruvate fermentation to hexanol
PhaeoP54_03074	PWY-6883	pyruvate fermentation to butanol II
PhaeoP54_03074	PWY-6944	androstenedione degradation
PhaeoP54_03074	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
PhaeoP54_03074	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
PhaeoP54_03074	PWY-7007	methyl ketone biosynthesis
PhaeoP54_03074	PWY-7046	4-coumarate degradation (anaerobic)
PhaeoP54_03074	PWY-7094	fatty acid salvage
PhaeoP54_03074	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
PhaeoP54_03074	PWY-735	jasmonic acid biosynthesis
PhaeoP54_03074	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
PhaeoP54_03074	PWY-7606	docosahexaenoate biosynthesis III (mammals)
PhaeoP54_03074	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
PhaeoP54_03074	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
PhaeoP54_03074	PWY-7726	PhaeoP54_03074
PhaeoP54_03074	PWY-7778	PhaeoP54_03074
PhaeoP54_03074	PWY-7779	PhaeoP54_03074
PhaeoP54_03082	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PhaeoP54_03082	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PhaeoP54_03092	PWY-6012	acyl carrier protein metabolism I
PhaeoP54_03092	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
PhaeoP54_03092	PWY-6289	petrobactin biosynthesis
PhaeoP54_03097	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PhaeoP54_03097	PWY-6148	tetrahydromethanopterin biosynthesis
PhaeoP54_03097	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
PhaeoP54_03097	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PhaeoP54_03097	PWY-7852	PhaeoP54_03097
PhaeoP54_03097	PWY-7853	PhaeoP54_03097
PhaeoP54_03099	PWY-7560	methylerythritol phosphate pathway II
PhaeoP54_03139	PWY-3461	L-tyrosine biosynthesis II
PhaeoP54_03139	PWY-3462	L-phenylalanine biosynthesis II
PhaeoP54_03139	PWY-6120	L-tyrosine biosynthesis III
PhaeoP54_03139	PWY-6627	salinosporamide A biosynthesis
PhaeoP54_03139	PWY-7626	bacilysin biosynthesis
PhaeoP54_03141	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
PhaeoP54_03144	PWY-6829	tRNA methylation (yeast)
PhaeoP54_03144	PWY-7285	methylwyosine biosynthesis
PhaeoP54_03144	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
PhaeoP54_03160	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PhaeoP54_03165	PWY-40	putrescine biosynthesis I
PhaeoP54_03165	PWY-6305	putrescine biosynthesis IV
PhaeoP54_03183	PWY-5686	UMP biosynthesis
PhaeoP54_03183	PWY-7790	PhaeoP54_03183
PhaeoP54_03183	PWY-7791	PhaeoP54_03183
PhaeoP54_03217	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
PhaeoP54_03222	PWY-7884	PhaeoP54_03222
PhaeoP54_03223	PWY-6123	inosine-5'-phosphate biosynthesis I
PhaeoP54_03223	PWY-6124	inosine-5'-phosphate biosynthesis II
PhaeoP54_03223	PWY-7234	inosine-5'-phosphate biosynthesis III
PhaeoP54_03228	PWY-2941	L-lysine biosynthesis II
PhaeoP54_03228	PWY-2942	L-lysine biosynthesis III
PhaeoP54_03228	PWY-5097	L-lysine biosynthesis VI
PhaeoP54_03242	PWY-7831	PhaeoP54_03242
PhaeoP54_03242	PWY-7833	PhaeoP54_03242
PhaeoP54_03251	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PhaeoP54_03264	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
PhaeoP54_03271	PWY-6168	flavin biosynthesis III (fungi)
PhaeoP54_03271	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PhaeoP54_03271	PWY-7991	PhaeoP54_03271
PhaeoP54_03273	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PhaeoP54_03287	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
PhaeoP54_03309	PWY-5704	urea degradation II
PhaeoP54_03311	PWY-5704	urea degradation II
PhaeoP54_03312	PWY-5704	urea degradation II
PhaeoP54_03329	PWY-2941	L-lysine biosynthesis II
PhaeoP54_03329	PWY-5097	L-lysine biosynthesis VI
PhaeoP54_03334	PWY-3781	aerobic respiration I (cytochrome c)
PhaeoP54_03334	PWY-6692	Fe(II) oxidation
PhaeoP54_03334	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
PhaeoP54_03334	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PhaeoP54_03337	PWY-6167	flavin biosynthesis II (archaea)
PhaeoP54_03337	PWY-6168	flavin biosynthesis III (fungi)
PhaeoP54_03342	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PhaeoP54_03347	PWY-5057	L-valine degradation II
PhaeoP54_03347	PWY-5076	L-leucine degradation III
PhaeoP54_03347	PWY-5078	L-isoleucine degradation II
PhaeoP54_03347	PWY-5101	L-isoleucine biosynthesis II
PhaeoP54_03347	PWY-5103	L-isoleucine biosynthesis III
PhaeoP54_03347	PWY-5104	L-isoleucine biosynthesis IV
PhaeoP54_03347	PWY-5108	L-isoleucine biosynthesis V
PhaeoP54_03347	PWY-7767	PhaeoP54_03347
PhaeoP54_03353	PWY-6891	thiazole biosynthesis II (Bacillus)
PhaeoP54_03353	PWY-6892	thiazole biosynthesis I (E. coli)
PhaeoP54_03353	PWY-7560	methylerythritol phosphate pathway II
PhaeoP54_03357	PWY-5392	reductive TCA cycle II
PhaeoP54_03357	PWY-5537	pyruvate fermentation to acetate V
PhaeoP54_03357	PWY-5538	pyruvate fermentation to acetate VI
PhaeoP54_03357	PWY-5690	TCA cycle II (plants and fungi)
PhaeoP54_03357	PWY-5913	TCA cycle VI (obligate autotrophs)
PhaeoP54_03357	PWY-6728	methylaspartate cycle
PhaeoP54_03357	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PhaeoP54_03357	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PhaeoP54_03360	PWY-6610	adenine and adenosine salvage IV
PhaeoP54_03361	PWY-6617	adenosine nucleotides degradation III
PhaeoP54_03367	PWY-6700	queuosine biosynthesis
PhaeoP54_03383	PWY-3821	galactose degradation III
PhaeoP54_03383	PWY-6317	galactose degradation I (Leloir pathway)
PhaeoP54_03383	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
PhaeoP54_03383	PWY-6527	stachyose degradation
PhaeoP54_03383	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
PhaeoP54_03383	PWY-7344	UDP-D-galactose biosynthesis
PhaeoP54_03384	PWY-3801	sucrose degradation II (sucrose synthase)
PhaeoP54_03384	PWY-6527	stachyose degradation
PhaeoP54_03384	PWY-7238	sucrose biosynthesis II
PhaeoP54_03384	PWY-7343	UDP-glucose biosynthesis
PhaeoP54_03384	PWY-7817	PhaeoP54_03384
PhaeoP54_03385	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PhaeoP54_03396	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PhaeoP54_03397	PWY-6502	oxidized GTP and dGTP detoxification
PhaeoP54_03405	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
PhaeoP54_03405	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
PhaeoP54_03405	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
PhaeoP54_03405	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
PhaeoP54_03405	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
PhaeoP54_03405	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
PhaeoP54_03405	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
PhaeoP54_03405	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
PhaeoP54_03405	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
PhaeoP54_03405	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
PhaeoP54_03429	PWY-4983	L-citrulline-nitric oxide cycle
PhaeoP54_03429	PWY-4984	urea cycle
PhaeoP54_03429	PWY-5	canavanine biosynthesis
PhaeoP54_03429	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PhaeoP54_03429	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PhaeoP54_03436	PWY-1281	sulfoacetaldehyde degradation I
PhaeoP54_03436	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
PhaeoP54_03436	PWY-5482	pyruvate fermentation to acetate II
PhaeoP54_03436	PWY-5485	pyruvate fermentation to acetate IV
PhaeoP54_03436	PWY-5497	purine nucleobases degradation II (anaerobic)
PhaeoP54_03436	PWY-6637	sulfolactate degradation II
PhaeoP54_03436	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PhaeoP54_03449	PWY-7980	PhaeoP54_03449
PhaeoP54_03452	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PhaeoP54_03453	PWY-7851	PhaeoP54_03453
PhaeoP54_03480	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
PhaeoP54_03486	PWY-5667	CDP-diacylglycerol biosynthesis I
PhaeoP54_03486	PWY-5981	CDP-diacylglycerol biosynthesis III
PhaeoP54_03486	PWY-7902	PhaeoP54_03486
PhaeoP54_03488	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PhaeoP54_03488	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
PhaeoP54_03522	PWY-7980	PhaeoP54_03522
PhaeoP54_03546	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
PhaeoP54_03549	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PhaeoP54_03549	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PhaeoP54_03549	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PhaeoP54_03549	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PhaeoP54_03570	PWY-5028	L-histidine degradation II
PhaeoP54_03570	PWY-5030	L-histidine degradation III
PhaeoP54_03572	PWY-5028	L-histidine degradation II
PhaeoP54_03572	PWY-5030	L-histidine degradation III
PhaeoP54_03573	PWY-5028	L-histidine degradation II
PhaeoP54_03573	PWY-5030	L-histidine degradation III
PhaeoP54_03586	PWY-5839	menaquinol-7 biosynthesis
PhaeoP54_03586	PWY-5844	menaquinol-9 biosynthesis
PhaeoP54_03586	PWY-5849	menaquinol-6 biosynthesis
PhaeoP54_03586	PWY-5890	menaquinol-10 biosynthesis
PhaeoP54_03586	PWY-5891	menaquinol-11 biosynthesis
PhaeoP54_03586	PWY-5892	menaquinol-12 biosynthesis
PhaeoP54_03586	PWY-5895	menaquinol-13 biosynthesis
PhaeoP54_03611	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
PhaeoP54_03611	PWY-7494	choline degradation IV
PhaeoP54_03680	PWY-7942	PhaeoP54_03680
PhaeoP54_03736	PWY-3781	aerobic respiration I (cytochrome c)
PhaeoP54_03736	PWY-4521	arsenite oxidation I (respiratory)
PhaeoP54_03736	PWY-6692	Fe(II) oxidation
PhaeoP54_03736	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PhaeoP54_03740	PWY-6523	nitrite-dependent anaerobic methane oxidation
PhaeoP54_03740	PWY-6748	nitrate reduction VII (denitrification)
PhaeoP54_03740	PWY-7084	nitrifier denitrification
PhaeoP54_03759	PWY-7533	gliotoxin biosynthesis
PhaeoP54_03763	PWY-3661	glycine betaine degradation I
PhaeoP54_03763	PWY-4722	creatinine degradation II
PhaeoP54_03764	PWY-3661	glycine betaine degradation I
PhaeoP54_03764	PWY-4722	creatinine degradation II
PhaeoP54_03765	PWY-3661	glycine betaine degradation I
PhaeoP54_03765	PWY-4722	creatinine degradation II
PhaeoP54_03766	PWY-3661	glycine betaine degradation I
PhaeoP54_03766	PWY-4722	creatinine degradation II
PhaeoP54_03798	PWY-5350	thiosulfate disproportionation III (rhodanese)
PhaeoP54_03798	PWY-7927	PhaeoP54_03798
PhaeoP54_03886	PWY-7884	PhaeoP54_03886
PhaeoP54_03936	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
PhaeoP54_03936	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
PhaeoP54_03937	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
PhaeoP54_03937	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PhaeoP54_03958	PWY-5506	methanol oxidation to formaldehyde IV
PhaeoP54_03969	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PhaeoP54_03970	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PhaeoP54_03970	PWY-3162	L-tryptophan degradation V (side chain pathway)
PhaeoP54_03970	PWY-5057	L-valine degradation II
PhaeoP54_03970	PWY-5076	L-leucine degradation III
PhaeoP54_03970	PWY-5078	L-isoleucine degradation II
PhaeoP54_03970	PWY-5079	L-phenylalanine degradation III
PhaeoP54_03970	PWY-5082	L-methionine degradation III
PhaeoP54_03970	PWY-5480	pyruvate fermentation to ethanol I
PhaeoP54_03970	PWY-5486	pyruvate fermentation to ethanol II
PhaeoP54_03970	PWY-5751	phenylethanol biosynthesis
PhaeoP54_03970	PWY-6313	serotonin degradation
PhaeoP54_03970	PWY-6333	acetaldehyde biosynthesis I
PhaeoP54_03970	PWY-6342	noradrenaline and adrenaline degradation
PhaeoP54_03970	PWY-6587	pyruvate fermentation to ethanol III
PhaeoP54_03970	PWY-6802	salidroside biosynthesis
PhaeoP54_03970	PWY-6871	3-methylbutanol biosynthesis
PhaeoP54_03970	PWY-7013	L-1,2-propanediol degradation
PhaeoP54_03970	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PhaeoP54_03970	PWY-7118	chitin degradation to ethanol
PhaeoP54_03970	PWY-7396	butanol and isobutanol biosynthesis (engineered)
PhaeoP54_03970	PWY-7798	PhaeoP54_03970
PhaeoP54_03973	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PhaeoP54_04037	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
PhaeoP54_04037	PWY-7820	PhaeoP54_04037
PhaeoP54_04043	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
PhaeoP54_04043	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
PhaeoP54_04043	PWY-7622	UDP-galactofuranose biosynthesis
PhaeoP54_04052	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
PhaeoP54_04052	PWY-5739	GDP-D-perosamine biosynthesis
PhaeoP54_04052	PWY-5740	GDP-L-colitose biosynthesis
PhaeoP54_04052	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
PhaeoP54_04052	PWY-7573	GDP-mycosamine biosynthesis
PhaeoP54_04053	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
PhaeoP54_04054	PWY-5659	GDP-mannose biosynthesis
PhaeoP54_04054	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
PhaeoP54_04059	PWY-3221	dTDP-L-rhamnose biosynthesis II
PhaeoP54_04059	PWY-6808	dTDP-D-forosamine biosynthesis
PhaeoP54_04059	PWY-6942	dTDP-D-desosamine biosynthesis
PhaeoP54_04059	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
PhaeoP54_04059	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
PhaeoP54_04059	PWY-6974	dTDP-L-olivose biosynthesis
PhaeoP54_04059	PWY-6976	dTDP-L-mycarose biosynthesis
PhaeoP54_04059	PWY-7104	dTDP-L-megosamine biosynthesis
PhaeoP54_04059	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
PhaeoP54_04059	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
PhaeoP54_04059	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
PhaeoP54_04059	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
PhaeoP54_04059	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
PhaeoP54_04059	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
PhaeoP54_04059	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
PhaeoP54_04059	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
PhaeoP54_04059	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
PhaeoP54_04059	PWY-7688	PhaeoP54_04059
PhaeoP54_04059	PWY-7814	PhaeoP54_04059
PhaeoP54_04061	PWY-3221	dTDP-L-rhamnose biosynthesis II
PhaeoP54_04061	PWY-6808	dTDP-D-forosamine biosynthesis
PhaeoP54_04061	PWY-6942	dTDP-D-desosamine biosynthesis
PhaeoP54_04061	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
PhaeoP54_04061	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
PhaeoP54_04061	PWY-6974	dTDP-L-olivose biosynthesis
PhaeoP54_04061	PWY-6976	dTDP-L-mycarose biosynthesis
PhaeoP54_04061	PWY-7104	dTDP-L-megosamine biosynthesis
PhaeoP54_04061	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
PhaeoP54_04061	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
PhaeoP54_04061	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
PhaeoP54_04061	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
PhaeoP54_04061	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
PhaeoP54_04061	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
PhaeoP54_04061	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
PhaeoP54_04061	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
PhaeoP54_04061	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
PhaeoP54_04061	PWY-7688	PhaeoP54_04061
PhaeoP54_04061	PWY-7814	PhaeoP54_04061