PhaeoP54_00001	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00001	SM00760	Bacterial dnaA protein helix-turn-helix domain
PhaeoP54_00002	SM00480	DNA polymerase III beta subunit
PhaeoP54_00007	SM00387	Histidine kinase-like ATPases
PhaeoP54_00007	SM00433	TopoisomeraseII
PhaeoP54_00012	SM01329	PhaeoP54_00012
PhaeoP54_00014	SM00344	helix_turn_helix ASNC type
PhaeoP54_00029	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP54_00029	SM00257	Lysin motif
PhaeoP54_00039	SM00346	helix_turn_helix isocitrate lyase regulation
PhaeoP54_00052	SM00450	Rhodanese Homology Domain
PhaeoP54_00054	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PhaeoP54_00054	SM00091	PAS domain
PhaeoP54_00054	SM00387	Histidine kinase-like ATPases
PhaeoP54_00054	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_00054	SM00448	cheY-homologous receiver domain
PhaeoP54_00058	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00078	SM00341	Helicase and RNase D C-terminal
PhaeoP54_00078	SM00487	DEAD-like helicases superfamily
PhaeoP54_00078	SM00490	helicase superfamily c-terminal domain
PhaeoP54_00078	SM00956	PhaeoP54_00078
PhaeoP54_00080	SM00387	Histidine kinase-like ATPases
PhaeoP54_00080	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_00080	SM00448	cheY-homologous receiver domain
PhaeoP54_00081	SM01359	PhaeoP54_00081
PhaeoP54_00081	SM01360	PhaeoP54_00081
PhaeoP54_00090	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
PhaeoP54_00090	SM00474	3'-5' exonuclease
PhaeoP54_00090	SM00475	5'-3' exonuclease
PhaeoP54_00090	SM00482	DNA polymerase A domain
PhaeoP54_00091	SM00052	Putative diguanylate phosphodiesterase
PhaeoP54_00091	SM00267	diguanylate cyclase
PhaeoP54_00093	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00097	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP54_00112	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP54_00117	SM00947	Carbonic anhydrase
PhaeoP54_00120	SM00859	Semialdehyde dehydrogenase, NAD binding domain
PhaeoP54_00125	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00126	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00130	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_00133	SM00420	helix_turn_helix, Deoxyribose operon repressor
PhaeoP54_00133	SM01134	PhaeoP54_00133
PhaeoP54_00137	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00151	SM00226	Low molecular weight phosphatase family
PhaeoP54_00155	SM00316	Ribosomal protein S1-like RNA-binding domain
PhaeoP54_00163	SM00869	Autotransporter beta-domain
PhaeoP54_00167	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_00172	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP54_00178	SM00244	prohibitin homologues
PhaeoP54_00179	SM00244	prohibitin homologues
PhaeoP54_00183	SM00220	Serine/Threonine protein kinases, catalytic domain
PhaeoP54_00186	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_00186	SM00895	PhaeoP54_00186
PhaeoP54_00191	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_00194	SM00903	Flavin reductase like domain
PhaeoP54_00210	SM00422	helix_turn_helix, mercury resistance
PhaeoP54_00212	SM00020	Trypsin-like serine protease
PhaeoP54_00214	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00217	SM00763	PrkA AAA domain
PhaeoP54_00220	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_00220	SM00895	PhaeoP54_00220
PhaeoP54_00223	SM00422	helix_turn_helix, mercury resistance
PhaeoP54_00231	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00232	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00235	SM00849	Metallo-beta-lactamase superfamily
PhaeoP54_00236	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP54_00237	SM00829	Enoylreductase
PhaeoP54_00241	SM00354	helix_turn _helix lactose operon repressor
PhaeoP54_00245	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00247	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_00250	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PhaeoP54_00250	SM00245	tail specific protease
PhaeoP54_00251	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_00254	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00260	SM00278	Helix-hairpin-helix DNA-binding motif class 1
PhaeoP54_00260	SM00465	GIY-YIG type nucleases (URI domain)
PhaeoP54_00273	SM01207	PhaeoP54_00273
PhaeoP54_00278	SM00986	Uracil DNA glycosylase superfamily
PhaeoP54_00278	SM00987	UreE urease accessory protein, C-terminal domain 
PhaeoP54_00279	SM00852	Probable molybdopterin binding domain
PhaeoP54_00287	SM00849	Metallo-beta-lactamase superfamily
PhaeoP54_00297	SM00852	Probable molybdopterin binding domain
PhaeoP54_00302	SM00422	helix_turn_helix, mercury resistance
PhaeoP54_00304	SM00028	Tetratricopeptide repeats
PhaeoP54_00312	SM00822	PhaeoP54_00312
PhaeoP54_00314	SM00052	Putative diguanylate phosphodiesterase
PhaeoP54_00323	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00325	SM00563	Phosphate acyltransferases
PhaeoP54_00331	SM00861	Transketolase, pyrimidine binding domain
PhaeoP54_00332	SM00881	CoA binding domain
PhaeoP54_00354	SM00528	Domain in histone-like proteins of HNS family
PhaeoP54_00357	SM00563	Phosphate acyltransferases
PhaeoP54_00358	SM00829	Enoylreductase
PhaeoP54_00359	SM00421	helix_turn_helix, Lux Regulon
PhaeoP54_00361	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00367	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00371	SM00932	Scaffold protein Nfu/NifU N terminal
PhaeoP54_00389	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00394	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_00394	SM00866	PhaeoP54_00394
PhaeoP54_00400	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00401	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00402	SM00072	Guanylate kinase homologues.
PhaeoP54_00408	SM00855	Phosphoglycerate mutase family
PhaeoP54_00417	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00422	SM00344	helix_turn_helix ASNC type
PhaeoP54_00424	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP54_00426	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
PhaeoP54_00427	SM00829	Enoylreductase
PhaeoP54_00428	SM00998	Adenylosuccinate lyase C-terminus
PhaeoP54_00437	SM00825	Beta-ketoacyl synthase
PhaeoP54_00443	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP54_00448	SM01091	Transporter associated domain
PhaeoP54_00456	SM00316	Ribosomal protein S1-like RNA-binding domain
PhaeoP54_00457	SM00411	bacterial (prokaryotic) histone like domain
PhaeoP54_00476	SM00822	PhaeoP54_00476
PhaeoP54_00480	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_00480	SM00895	PhaeoP54_00480
PhaeoP54_00481	SM01130	PhaeoP54_00481
PhaeoP54_00485	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP54_00485	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_00491	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00492	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00505	SM00823	Phosphopantetheine attachment site
PhaeoP54_00507	SM00822	PhaeoP54_00507
PhaeoP54_00507	SM00823	Phosphopantetheine attachment site
PhaeoP54_00507	SM00824	Thioesterase
PhaeoP54_00507	SM00825	Beta-ketoacyl synthase
PhaeoP54_00507	SM00826	PhaeoP54_00507
PhaeoP54_00507	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
PhaeoP54_00521	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
PhaeoP54_00525	SM00346	helix_turn_helix isocitrate lyase regulation
PhaeoP54_00526	SM01230	PhaeoP54_00526
PhaeoP54_00550	SM00487	DEAD-like helicases superfamily
PhaeoP54_00550	SM00490	helicase superfamily c-terminal domain
PhaeoP54_00557	SM00278	Helix-hairpin-helix DNA-binding motif class 1
PhaeoP54_00558	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00568	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00571	SM00830	Chorismate mutase type II
PhaeoP54_00575	SM00487	DEAD-like helicases superfamily
PhaeoP54_00575	SM00490	helicase superfamily c-terminal domain
PhaeoP54_00578	SM00028	Tetratricopeptide repeats
PhaeoP54_00579	SM00028	Tetratricopeptide repeats
PhaeoP54_00586	SM00858	PhaeoP54_00586
PhaeoP54_00591	SM00882	Coenzyme A transferase
PhaeoP54_00592	SM00882	Coenzyme A transferase
PhaeoP54_00593	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
PhaeoP54_00593	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
PhaeoP54_00593	SM00493	PhaeoP54_00593
PhaeoP54_00607	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
PhaeoP54_00612	SM00903	Flavin reductase like domain
PhaeoP54_00624	SM00905	Dihydroneopterin aldolase
PhaeoP54_00630	SM00344	helix_turn_helix ASNC type
PhaeoP54_00631	SM00344	helix_turn_helix ASNC type
PhaeoP54_00636	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_00636	SM00895	PhaeoP54_00636
PhaeoP54_00638	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
PhaeoP54_00652	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00653	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00667	SM00873	B3/4 domain
PhaeoP54_00667	SM00874	tRNA synthetase B5 domain
PhaeoP54_00667	SM00896	Ferredoxin-fold anticodon binding domain
PhaeoP54_00677	SM00344	helix_turn_helix ASNC type
PhaeoP54_00681	SM00346	helix_turn_helix isocitrate lyase regulation
PhaeoP54_00683	SM00354	helix_turn _helix lactose operon repressor
PhaeoP54_00693	SM00354	helix_turn _helix lactose operon repressor
PhaeoP54_00696	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00701	SM00822	PhaeoP54_00701
PhaeoP54_00707	SM00346	helix_turn_helix isocitrate lyase regulation
PhaeoP54_00708	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00715	SM00028	Tetratricopeptide repeats
PhaeoP54_00716	SM00490	helicase superfamily c-terminal domain
PhaeoP54_00717	SM00363	S4 RNA-binding domain
PhaeoP54_00719	SM01058	CarD-like/TRCF domain
PhaeoP54_00725	SM00344	helix_turn_helix ASNC type
PhaeoP54_00732	SM00387	Histidine kinase-like ATPases
PhaeoP54_00732	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_00732	SM00448	cheY-homologous receiver domain
PhaeoP54_00739	SM00822	PhaeoP54_00739
PhaeoP54_00745	SM00354	helix_turn _helix lactose operon repressor
PhaeoP54_00750	SM00354	helix_turn _helix lactose operon repressor
PhaeoP54_00754	SM00642	Alpha-amylase domain
PhaeoP54_00755	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00757	SM00387	Histidine kinase-like ATPases
PhaeoP54_00757	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_00758	SM00448	cheY-homologous receiver domain
PhaeoP54_00758	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP54_00763	SM00849	Metallo-beta-lactamase superfamily
PhaeoP54_00765	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00767	SM00936	Penicillin-binding protein 5, C-terminal domain 
PhaeoP54_00785	SM00833	Cobalamin synthesis protein cobW C-terminal domain
PhaeoP54_00793	SM00420	helix_turn_helix, Deoxyribose operon repressor
PhaeoP54_00793	SM01134	PhaeoP54_00793
PhaeoP54_00805	SM00450	Rhodanese Homology Domain
PhaeoP54_00806	SM00450	Rhodanese Homology Domain
PhaeoP54_00808	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_00813	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_00819	SM00054	EF-hand, calcium binding motif
PhaeoP54_00823	SM00267	diguanylate cyclase
PhaeoP54_00823	SM00448	cheY-homologous receiver domain
PhaeoP54_00829	SM00267	diguanylate cyclase
PhaeoP54_00842	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
PhaeoP54_00849	SM00400	zinc finger
PhaeoP54_00849	SM00493	PhaeoP54_00849
PhaeoP54_00870	SM00363	S4 RNA-binding domain
PhaeoP54_00872	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP54_00872	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_00872	SM01049	PhaeoP54_00872
PhaeoP54_00881	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP54_00881	SM00876	Biotin and Thiamin Synthesis associated domain
PhaeoP54_00890	SM00881	CoA binding domain
PhaeoP54_00899	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_00910	SM00878	Biotin carboxylase C-terminal domain
PhaeoP54_00913	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PhaeoP54_00913	SM00267	diguanylate cyclase
PhaeoP54_00927	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_00938	SM00842	Cell division protein FtsA
PhaeoP54_00939	SM00864	Tubulin/FtsZ family, GTPase domain
PhaeoP54_00939	SM00865	Tubulin/FtsZ family, C-terminal domain
PhaeoP54_00947	SM00327	von Willebrand factor (vWF) type A domain
PhaeoP54_00949	SM00487	DEAD-like helicases superfamily
PhaeoP54_00949	SM00490	helicase superfamily c-terminal domain
PhaeoP54_00951	SM00271	DnaJ molecular chaperone homology domain
PhaeoP54_00954	SM00845	GatB domain
PhaeoP54_00955	SM00316	Ribosomal protein S1-like RNA-binding domain
PhaeoP54_00955	SM00732	Likely ribonuclease with RNase H fold.
PhaeoP54_00963	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
PhaeoP54_00970	SM00849	Metallo-beta-lactamase superfamily
PhaeoP54_00973	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
PhaeoP54_00973	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
PhaeoP54_00976	SM00422	helix_turn_helix, mercury resistance
PhaeoP54_00983	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_00990	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP54_01003	SM00878	Biotin carboxylase C-terminal domain
PhaeoP54_01013	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
PhaeoP54_01016	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
PhaeoP54_01028	SM00849	Metallo-beta-lactamase superfamily
PhaeoP54_01030	SM00487	DEAD-like helicases superfamily
PhaeoP54_01030	SM00490	helicase superfamily c-terminal domain
PhaeoP54_01039	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01046	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01047	SM00257	Lysin motif
PhaeoP54_01057	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01060	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01062	SM01005	Alanine racemase, C-terminal domain
PhaeoP54_01068	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01069	SM00327	von Willebrand factor (vWF) type A domain
PhaeoP54_01078	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01082	SM00357	Cold shock protein domain
PhaeoP54_01088	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PhaeoP54_01090	SM00836	DALR anticodon binding domain
PhaeoP54_01090	SM01016	Arginyl tRNA synthetase N terminal dom
PhaeoP54_01098	SM00422	helix_turn_helix, mercury resistance
PhaeoP54_01099	SM00411	bacterial (prokaryotic) histone like domain
PhaeoP54_01106	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01107	SM01266	PhaeoP54_01107
PhaeoP54_01117	SM00487	DEAD-like helicases superfamily
PhaeoP54_01117	SM00490	helicase superfamily c-terminal domain
PhaeoP54_01120	SM01192	PhaeoP54_01120
PhaeoP54_01120	SM01193	PhaeoP54_01120
PhaeoP54_01130	SM01230	PhaeoP54_01130
PhaeoP54_01132	SM01230	PhaeoP54_01132
PhaeoP54_01135	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP54_01136	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01142	SM00344	helix_turn_helix ASNC type
PhaeoP54_01155	SM00344	helix_turn_helix ASNC type
PhaeoP54_01156	SM00028	Tetratricopeptide repeats
PhaeoP54_01159	SM00387	Histidine kinase-like ATPases
PhaeoP54_01159	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_01159	SM00448	cheY-homologous receiver domain
PhaeoP54_01159	SM01079	PhaeoP54_01159
PhaeoP54_01160	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PhaeoP54_01160	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP54_01160	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_01172	SM00919	Malic enzyme, NAD binding domain
PhaeoP54_01172	SM01274	PhaeoP54_01172
PhaeoP54_01175	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
PhaeoP54_01189	SM00422	helix_turn_helix, mercury resistance
PhaeoP54_01190	SM00422	helix_turn_helix, mercury resistance
PhaeoP54_01199	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_01200	SM00450	Rhodanese Homology Domain
PhaeoP54_01208	SM00450	Rhodanese Homology Domain
PhaeoP54_01218	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP54_01231	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_01233	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01233	SM00994	ClpX C4-type zinc finger
PhaeoP54_01233	SM01086	C-terminal, D2-small domain, of ClpB protein
PhaeoP54_01240	SM00878	Biotin carboxylase C-terminal domain
PhaeoP54_01242	SM00421	helix_turn_helix, Lux Regulon
PhaeoP54_01243	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01244	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01248	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_01249	SM00448	cheY-homologous receiver domain
PhaeoP54_01251	SM00387	Histidine kinase-like ATPases
PhaeoP54_01251	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_01256	SM00849	Metallo-beta-lactamase superfamily
PhaeoP54_01266	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01272	SM00903	Flavin reductase like domain
PhaeoP54_01280	SM00448	cheY-homologous receiver domain
PhaeoP54_01280	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP54_01281	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_01281	SM00387	Histidine kinase-like ATPases
PhaeoP54_01281	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_01284	SM00849	Metallo-beta-lactamase superfamily
PhaeoP54_01285	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_01285	SM00387	Histidine kinase-like ATPases
PhaeoP54_01285	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_01287	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_01287	SM00866	PhaeoP54_01287
PhaeoP54_01290	SM00903	Flavin reductase like domain
PhaeoP54_01294	SM00671	Sel1-like repeats.
PhaeoP54_01297	SM00822	PhaeoP54_01297
PhaeoP54_01298	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01302	SM00354	helix_turn _helix lactose operon repressor
PhaeoP54_01305	SM00849	Metallo-beta-lactamase superfamily
PhaeoP54_01309	SM00474	3'-5' exonuclease
PhaeoP54_01315	SM01018	B12 binding domain
PhaeoP54_01316	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP54_01322	SM01211	PhaeoP54_01322
PhaeoP54_01323	SM00387	Histidine kinase-like ATPases
PhaeoP54_01323	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_01324	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01324	SM00448	cheY-homologous receiver domain
PhaeoP54_01339	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01363	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_01366	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_01366	SM00895	PhaeoP54_01366
PhaeoP54_01367	SM00829	Enoylreductase
PhaeoP54_01377	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PhaeoP54_01379	SM00354	helix_turn _helix lactose operon repressor
PhaeoP54_01385	SM00116	Domain in cystathionine beta-synthase and other proteins.
PhaeoP54_01385	SM01091	Transporter associated domain
PhaeoP54_01391	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP54_01395	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01399	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_01406	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PhaeoP54_01409	SM00935	Outer membrane protein (OmpH-like)
PhaeoP54_01416	SM00448	cheY-homologous receiver domain
PhaeoP54_01416	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP54_01417	SM00292	breast cancer carboxy-terminal domain
PhaeoP54_01417	SM00532	Ligase N family
PhaeoP54_01418	SM00487	DEAD-like helicases superfamily
PhaeoP54_01418	SM00490	helicase superfamily c-terminal domain
PhaeoP54_01431	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_01453	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP54_01464	SM00387	Histidine kinase-like ATPases
PhaeoP54_01464	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_01465	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01465	SM00448	cheY-homologous receiver domain
PhaeoP54_01466	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_01466	SM00387	Histidine kinase-like ATPases
PhaeoP54_01466	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_01467	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01467	SM00448	cheY-homologous receiver domain
PhaeoP54_01476	SM01004	Delta-aminolevulinic acid dehydratase
PhaeoP54_01478	SM00487	DEAD-like helicases superfamily
PhaeoP54_01478	SM00490	helicase superfamily c-terminal domain
PhaeoP54_01478	SM00982	PhaeoP54_01478
PhaeoP54_01478	SM01058	CarD-like/TRCF domain
PhaeoP54_01482	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_01485	SM00226	Low molecular weight phosphatase family
PhaeoP54_01486	SM00226	Low molecular weight phosphatase family
PhaeoP54_01486	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP54_01500	SM00434	DNA Topoisomerase IV
PhaeoP54_01508	SM00116	Domain in cystathionine beta-synthase and other proteins.
PhaeoP54_01508	SM01240	PhaeoP54_01508
PhaeoP54_01510	SM00387	Histidine kinase-like ATPases
PhaeoP54_01510	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_01510	SM00448	cheY-homologous receiver domain
PhaeoP54_01512	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01513	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PhaeoP54_01516	SM00838	Elongation factor G C-terminus
PhaeoP54_01518	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PhaeoP54_01527	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01539	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
PhaeoP54_01544	SM00563	Phosphate acyltransferases
PhaeoP54_01547	SM00421	helix_turn_helix, Lux Regulon
PhaeoP54_01549	SM00829	Enoylreductase
PhaeoP54_01552	SM00346	helix_turn_helix isocitrate lyase regulation
PhaeoP54_01560	SM00448	cheY-homologous receiver domain
PhaeoP54_01560	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP54_01562	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01566	SM00387	Histidine kinase-like ATPases
PhaeoP54_01566	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_01569	SM00072	Guanylate kinase homologues.
PhaeoP54_01573	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_01576	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01577	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01582	SM00825	Beta-ketoacyl synthase
PhaeoP54_01595	SM00155	Phospholipase D. Active site motifs.
PhaeoP54_01598	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01604	SM01092	CO dehydrogenase flavoprotein C-terminal domain
PhaeoP54_01606	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
PhaeoP54_01609	SM01007	Class II Aldolase and Adducin N-terminal domain
PhaeoP54_01614	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01615	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01616	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PhaeoP54_01620	SM00344	helix_turn_helix ASNC type
PhaeoP54_01624	SM00507	HNH nucleases
PhaeoP54_01627	SM00478	endonuclease III
PhaeoP54_01630	SM00917	LeuA allosteric (dimerisation) domain
PhaeoP54_01631	SM00840	PhaeoP54_01631
PhaeoP54_01636	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01637	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01643	SM00091	PAS domain
PhaeoP54_01643	SM00138	Methyltransferase, chemotaxis proteins 
PhaeoP54_01644	SM00861	Transketolase, pyrimidine binding domain
PhaeoP54_01646	SM00344	helix_turn_helix ASNC type
PhaeoP54_01652	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01657	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_01657	SM00895	PhaeoP54_01657
PhaeoP54_01658	SM00052	Putative diguanylate phosphodiesterase
PhaeoP54_01658	SM00267	diguanylate cyclase
PhaeoP54_01663	SM00357	Cold shock protein domain
PhaeoP54_01674	SM00986	Uracil DNA glycosylase superfamily
PhaeoP54_01674	SM00987	UreE urease accessory protein, C-terminal domain 
PhaeoP54_01677	SM00852	Probable molybdopterin binding domain
PhaeoP54_01689	SM00859	Semialdehyde dehydrogenase, NAD binding domain
PhaeoP54_01691	SM00563	Phosphate acyltransferases
PhaeoP54_01704	SM00861	Transketolase, pyrimidine binding domain
PhaeoP54_01708	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01709	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01711	SM00421	helix_turn_helix, Lux Regulon
PhaeoP54_01717	SM00867	YceI-like domain 
PhaeoP54_01719	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
PhaeoP54_01722	SM00116	Domain in cystathionine beta-synthase and other proteins.
PhaeoP54_01727	SM00028	Tetratricopeptide repeats
PhaeoP54_01750	SM00861	Transketolase, pyrimidine binding domain
PhaeoP54_01760	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP54_01763	SM00971	Serine acetyltransferase, N-terminal
PhaeoP54_01783	SM00825	Beta-ketoacyl synthase
PhaeoP54_01788	SM00822	PhaeoP54_01788
PhaeoP54_01789	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
PhaeoP54_01790	SM00867	YceI-like domain 
PhaeoP54_01792	SM00867	YceI-like domain 
PhaeoP54_01804	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP54_01804	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_01804	SM01358	PhaeoP54_01804
PhaeoP54_01807	SM00938	Nitrogen regulatory protein P-II
PhaeoP54_01808	SM01230	PhaeoP54_01808
PhaeoP54_01814	SM00998	Adenylosuccinate lyase C-terminus
PhaeoP54_01825	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01829	SM01323	PhaeoP54_01829
PhaeoP54_01835	SM00564	beta-propeller repeat
PhaeoP54_01840	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01841	SM00257	Lysin motif
PhaeoP54_01853	SM00732	Likely ribonuclease with RNase H fold.
PhaeoP54_01855	SM00507	HNH nucleases
PhaeoP54_01859	SM00419	helix_turn_helix, cAMP Regulatory protein
PhaeoP54_01862	SM00091	PAS domain
PhaeoP54_01862	SM00387	Histidine kinase-like ATPases
PhaeoP54_01862	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_01862	SM00448	cheY-homologous receiver domain
PhaeoP54_01864	SM00421	helix_turn_helix, Lux Regulon
PhaeoP54_01864	SM00448	cheY-homologous receiver domain
PhaeoP54_01868	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP54_01868	SM00419	helix_turn_helix, cAMP Regulatory protein
PhaeoP54_01875	SM00562	PhaeoP54_01875
PhaeoP54_01876	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01886	SM00650	Ribosomal RNA adenine dimethylases
PhaeoP54_01890	SM00937	PhaeoP54_01890
PhaeoP54_01903	SM00833	Cobalamin synthesis protein cobW C-terminal domain
PhaeoP54_01907	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01930	SM00387	Histidine kinase-like ATPases
PhaeoP54_01930	SM01049	PhaeoP54_01930
PhaeoP54_01931	SM00421	helix_turn_helix, Lux Regulon
PhaeoP54_01931	SM00448	cheY-homologous receiver domain
PhaeoP54_01935	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_01938	SM00937	PhaeoP54_01938
PhaeoP54_01940	SM00646	PhaeoP54_01940
PhaeoP54_01942	SM00028	Tetratricopeptide repeats
PhaeoP54_01954	SM00855	Phosphoglycerate mutase family
PhaeoP54_01956	SM00344	helix_turn_helix ASNC type
PhaeoP54_01957	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
PhaeoP54_01960	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_01962	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_01962	SM00464	Found in ATP-dependent protease La (LON)
PhaeoP54_01967	SM00244	prohibitin homologues
PhaeoP54_01970	SM00833	Cobalamin synthesis protein cobW C-terminal domain
PhaeoP54_01978	SM00448	cheY-homologous receiver domain
PhaeoP54_01979	SM00387	Histidine kinase-like ATPases
PhaeoP54_01979	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_01982	SM00344	helix_turn_helix ASNC type
PhaeoP54_01995	SM01092	CO dehydrogenase flavoprotein C-terminal domain
PhaeoP54_01996	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
PhaeoP54_02009	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PhaeoP54_02016	SM00357	Cold shock protein domain
PhaeoP54_02019	SM00903	Flavin reductase like domain
PhaeoP54_02022	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_02022	SM00895	PhaeoP54_02022
PhaeoP54_02032	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_02034	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_02047	SM00387	Histidine kinase-like ATPases
PhaeoP54_02047	SM00433	TopoisomeraseII
PhaeoP54_02051	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
PhaeoP54_02053	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02061	SM00271	DnaJ molecular chaperone homology domain
PhaeoP54_02068	SM00878	Biotin carboxylase C-terminal domain
PhaeoP54_02074	SM00235	Zinc-dependent metalloprotease
PhaeoP54_02076	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_02096	SM00116	Domain in cystathionine beta-synthase and other proteins.
PhaeoP54_02096	SM00924	MgtE intracellular N domain
PhaeoP54_02100	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_02101	SM00829	Enoylreductase
PhaeoP54_02109	SM00644	PhaeoP54_02109
PhaeoP54_02113	SM00849	Metallo-beta-lactamase superfamily
PhaeoP54_02116	SM00363	S4 RNA-binding domain
PhaeoP54_02128	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02130	SM01324	PhaeoP54_02130
PhaeoP54_02133	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02139	SM00448	cheY-homologous receiver domain
PhaeoP54_02140	SM00911	HWE histidine kinase
PhaeoP54_02166	SM00507	HNH nucleases
PhaeoP54_02173	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_02178	SM00480	DNA polymerase III beta subunit
PhaeoP54_02185	SM00421	helix_turn_helix, Lux Regulon
PhaeoP54_02185	SM00448	cheY-homologous receiver domain
PhaeoP54_02186	SM00897	FIST N domain
PhaeoP54_02186	SM01204	PhaeoP54_02186
PhaeoP54_02187	SM00387	Histidine kinase-like ATPases
PhaeoP54_02187	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_02187	SM00448	cheY-homologous receiver domain
PhaeoP54_02191	SM00420	helix_turn_helix, Deoxyribose operon repressor
PhaeoP54_02191	SM01134	PhaeoP54_02191
PhaeoP54_02193	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02197	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_02200	SM01230	PhaeoP54_02200
PhaeoP54_02208	SM00420	helix_turn_helix, Deoxyribose operon repressor
PhaeoP54_02208	SM01134	PhaeoP54_02208
PhaeoP54_02215	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_02216	SM00822	PhaeoP54_02216
PhaeoP54_02218	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PhaeoP54_02227	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02227	SM00962	SRP54-type protein, GTPase domain
PhaeoP54_02227	SM00963	SRP54-type protein, helical bundle domain
PhaeoP54_02231	SM01209	PhaeoP54_02231
PhaeoP54_02231	SM01210	PhaeoP54_02231
PhaeoP54_02233	SM00421	helix_turn_helix, Lux Regulon
PhaeoP54_02238	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP54_02238	SM00419	helix_turn_helix, cAMP Regulatory protein
PhaeoP54_02239	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PhaeoP54_02240	SM00244	prohibitin homologues
PhaeoP54_02241	SM00244	prohibitin homologues
PhaeoP54_02245	SM00886	Stress responsive A/B Barrel Domain
PhaeoP54_02252	SM00788	Adenylosuccinate synthetase
PhaeoP54_02254	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_02255	SM00822	PhaeoP54_02255
PhaeoP54_02262	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_02264	SM00487	DEAD-like helicases superfamily
PhaeoP54_02264	SM00491	PhaeoP54_02264
PhaeoP54_02278	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02281	SM00841	Elongation factor P, C-terminal
PhaeoP54_02281	SM01185	PhaeoP54_02281
PhaeoP54_02292	SM00838	Elongation factor G C-terminus
PhaeoP54_02297	SM00226	Low molecular weight phosphatase family
PhaeoP54_02301	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02302	SM00487	DEAD-like helicases superfamily
PhaeoP54_02302	SM00490	helicase superfamily c-terminal domain
PhaeoP54_02302	SM00847	Helicase associated domain (HA2)  Add an annotation
PhaeoP54_02313	SM00986	Uracil DNA glycosylase superfamily
PhaeoP54_02313	SM00987	UreE urease accessory protein, C-terminal domain 
PhaeoP54_02314	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02319	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP54_02328	SM01152	PhaeoP54_02328
PhaeoP54_02333	SM00448	cheY-homologous receiver domain
PhaeoP54_02341	SM00851	MGS-like domain
PhaeoP54_02341	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
PhaeoP54_02344	SM00020	Trypsin-like serine protease
PhaeoP54_02347	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_02362	SM00344	helix_turn_helix ASNC type
PhaeoP54_02371	SM01001	AIR carboxylase
PhaeoP54_02378	SM00883	Chaperonin 10 Kd subunit
PhaeoP54_02380	SM01131	PhaeoP54_02380
PhaeoP54_02381	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP54_02381	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_02384	SM00904	Riboflavin kinase
PhaeoP54_02390	SM01400	PhaeoP54_02390
PhaeoP54_02394	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02399	SM00849	Metallo-beta-lactamase superfamily
PhaeoP54_02400	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02400	SM01086	C-terminal, D2-small domain, of ClpB protein
PhaeoP54_02410	SM00344	helix_turn_helix ASNC type
PhaeoP54_02412	SM00363	S4 RNA-binding domain
PhaeoP54_02412	SM01390	PhaeoP54_02412
PhaeoP54_02431	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_02434	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_02444	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02446	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02449	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP54_02461	SM00850	LytTr DNA-binding domain
PhaeoP54_02465	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_02476	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
PhaeoP54_02476	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
PhaeoP54_02477	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
PhaeoP54_02480	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP54_02480	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_02482	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02488	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02497	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_02498	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_02507	SM00248	ankyrin repeats
PhaeoP54_02509	SM00235	Zinc-dependent metalloprotease
PhaeoP54_02511	SM00487	DEAD-like helicases superfamily
PhaeoP54_02511	SM00490	helicase superfamily c-terminal domain
PhaeoP54_02526	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02535	SM00357	Cold shock protein domain
PhaeoP54_02537	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02543	SM00267	diguanylate cyclase
PhaeoP54_02545	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
PhaeoP54_02546	SM00917	LeuA allosteric (dimerisation) domain
PhaeoP54_02560	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP54_02560	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
PhaeoP54_02567	SM00855	Phosphoglycerate mutase family
PhaeoP54_02569	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02574	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PhaeoP54_02578	SM00357	Cold shock protein domain
PhaeoP54_02587	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02592	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02607	SM00155	Phospholipase D. Active site motifs.
PhaeoP54_02611	SM00448	cheY-homologous receiver domain
PhaeoP54_02620	SM01230	PhaeoP54_02620
PhaeoP54_02627	SM00448	cheY-homologous receiver domain
PhaeoP54_02628	SM00387	Histidine kinase-like ATPases
PhaeoP54_02632	SM00448	cheY-homologous receiver domain
PhaeoP54_02635	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02642	SM00822	PhaeoP54_02642
PhaeoP54_02643	SM00354	helix_turn _helix lactose operon repressor
PhaeoP54_02649	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP54_02649	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_02649	SM01358	PhaeoP54_02649
PhaeoP54_02651	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
PhaeoP54_02660	SM00822	PhaeoP54_02660
PhaeoP54_02662	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_02662	SM00387	Histidine kinase-like ATPases
PhaeoP54_02662	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_02663	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02663	SM00448	cheY-homologous receiver domain
PhaeoP54_02665	SM00320	WD40 repeats
PhaeoP54_02668	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
PhaeoP54_02679	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02688	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
PhaeoP54_02692	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_02692	SM00866	PhaeoP54_02692
PhaeoP54_02699	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02707	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02713	SM00481	DNA polymerase alpha chain like domain
PhaeoP54_02714	SM01092	CO dehydrogenase flavoprotein C-terminal domain
PhaeoP54_02715	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
PhaeoP54_02717	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02734	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_02734	SM00895	PhaeoP54_02734
PhaeoP54_02736	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02744	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02745	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02748	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_02751	SM00448	cheY-homologous receiver domain
PhaeoP54_02752	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP54_02752	SM00387	Histidine kinase-like ATPases
PhaeoP54_02752	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_02752	SM00448	cheY-homologous receiver domain
PhaeoP54_02754	SM00829	Enoylreductase
PhaeoP54_02766	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PhaeoP54_02766	SM00448	cheY-homologous receiver domain
PhaeoP54_02766	SM00911	HWE histidine kinase
PhaeoP54_02769	SM00797	Allophanate hydrolase subunit 2
PhaeoP54_02770	SM00796	Allophanate hydrolase subunit 1
PhaeoP54_02776	SM00822	PhaeoP54_02776
PhaeoP54_02778	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP54_02779	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_02785	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
PhaeoP54_02790	SM01130	PhaeoP54_02790
PhaeoP54_02800	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_02801	SM00478	endonuclease III
PhaeoP54_02803	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_02817	SM00852	Probable molybdopterin binding domain
PhaeoP54_02830	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02835	SM00938	Nitrogen regulatory protein P-II
PhaeoP54_02838	SM00450	Rhodanese Homology Domain
PhaeoP54_02842	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_02862	SM00020	Trypsin-like serine protease
PhaeoP54_02863	SM00020	Trypsin-like serine protease
PhaeoP54_02877	SM01329	PhaeoP54_02877
PhaeoP54_02890	SM00641	Glycosyl hydrolases family 25
PhaeoP54_02902	SM00460	Transglutaminase/protease-like homologues
PhaeoP54_02908	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP54_02908	SM00419	helix_turn_helix, cAMP Regulatory protein
PhaeoP54_02909	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02922	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02925	SM00493	PhaeoP54_02925
PhaeoP54_02930	SM00829	Enoylreductase
PhaeoP54_02935	SM00344	helix_turn_helix ASNC type
PhaeoP54_02936	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
PhaeoP54_02936	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
PhaeoP54_02938	SM00829	Enoylreductase
PhaeoP54_02941	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
PhaeoP54_02945	SM00344	helix_turn_helix ASNC type
PhaeoP54_02947	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_02947	SM00871	Bacterial transcription activator, effector binding domain
PhaeoP54_02950	SM00895	PhaeoP54_02950
PhaeoP54_02956	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_02960	SM01230	PhaeoP54_02960
PhaeoP54_02962	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02964	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02975	SM00387	Histidine kinase-like ATPases
PhaeoP54_02975	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_02980	SM01234	PhaeoP54_02980
PhaeoP54_02983	SM00052	Putative diguanylate phosphodiesterase
PhaeoP54_02983	SM00267	diguanylate cyclase
PhaeoP54_02990	SM00855	Phosphoglycerate mutase family
PhaeoP54_02992	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_02995	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP54_02998	SM00363	S4 RNA-binding domain
PhaeoP54_03000	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03001	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PhaeoP54_03003	SM00662	RNA polymerases D
PhaeoP54_03011	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_03020	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
PhaeoP54_03021	SM01374	PhaeoP54_03021
PhaeoP54_03029	SM00322	K homology RNA-binding domain
PhaeoP54_03032	SM01382	PhaeoP54_03032
PhaeoP54_03032	SM01383	PhaeoP54_03032
PhaeoP54_03037	SM01403	PhaeoP54_03037
PhaeoP54_03040	SM00838	Elongation factor G C-terminus
PhaeoP54_03040	SM00889	Elongation factor G, domain IV
PhaeoP54_03052	SM00663	RNA polymerase I subunit A N-terminus
PhaeoP54_03057	SM00649	Ribosomal protein L11/L12
PhaeoP54_03059	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
PhaeoP54_03059	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
PhaeoP54_03061	SM00028	Tetratricopeptide repeats
PhaeoP54_03066	SM00434	DNA Topoisomerase IV
PhaeoP54_03067	SM00287	Bacterial SH3 domain homologues
PhaeoP54_03071	SM00893	Electron transfer flavoprotein domain
PhaeoP54_03072	SM00893	Electron transfer flavoprotein domain
PhaeoP54_03080	SM00387	Histidine kinase-like ATPases
PhaeoP54_03080	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_03081	SM00448	cheY-homologous receiver domain
PhaeoP54_03081	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP54_03090	SM00358	Double-stranded RNA binding motif
PhaeoP54_03090	SM00535	Ribonuclease III family
PhaeoP54_03095	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PhaeoP54_03095	SM00954	Region found in RelA / SpoT proteins
PhaeoP54_03096	SM01409	PhaeoP54_03096
PhaeoP54_03120	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_03120	SM00895	PhaeoP54_03120
PhaeoP54_03128	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP54_03132	SM00838	Elongation factor G C-terminus
PhaeoP54_03132	SM00889	Elongation factor G, domain IV
PhaeoP54_03135	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03135	SM00962	SRP54-type protein, GTPase domain
PhaeoP54_03135	SM00963	SRP54-type protein, helical bundle domain
PhaeoP54_03139	SM00830	Chorismate mutase type II
PhaeoP54_03150	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
PhaeoP54_03151	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_03154	SM00849	Metallo-beta-lactamase superfamily
PhaeoP54_03160	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP54_03164	SM00481	DNA polymerase alpha chain like domain
PhaeoP54_03168	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03182	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03182	SM01086	C-terminal, D2-small domain, of ClpB protein
PhaeoP54_03183	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
PhaeoP54_03194	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03200	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03202	SM00387	Histidine kinase-like ATPases
PhaeoP54_03202	SM00448	cheY-homologous receiver domain
PhaeoP54_03203	SM00448	cheY-homologous receiver domain
PhaeoP54_03203	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP54_03205	SM00855	Phosphoglycerate mutase family
PhaeoP54_03207	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
PhaeoP54_03207	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
PhaeoP54_03210	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
PhaeoP54_03212	SM00853	MutL C terminal dimerisation domain
PhaeoP54_03212	SM01340	PhaeoP54_03212
PhaeoP54_03215	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03217	SM01133	PhaeoP54_03217
PhaeoP54_03223	SM00798	AICARFT/IMPCHase bienzyme
PhaeoP54_03223	SM00851	MGS-like domain
PhaeoP54_03234	SM01387	PhaeoP54_03234
PhaeoP54_03236	SM00316	Ribosomal protein S1-like RNA-binding domain
PhaeoP54_03236	SM00322	K homology RNA-binding domain
PhaeoP54_03249	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_03253	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_03259	SM00992	Hemimethylated DNA-binding protein YccV like
PhaeoP54_03261	SM00464	Found in ATP-dependent protease La (LON)
PhaeoP54_03266	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03266	SM00843	PhaeoP54_03266
PhaeoP54_03270	SM00448	cheY-homologous receiver domain
PhaeoP54_03270	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP54_03283	SM00822	PhaeoP54_03283
PhaeoP54_03291	SM00478	endonuclease III
PhaeoP54_03293	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
PhaeoP54_03299	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
PhaeoP54_03300	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
PhaeoP54_03301	SM00861	Transketolase, pyrimidine binding domain
PhaeoP54_03303	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03304	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03313	SM00988	UreE urease accessory protein, N-terminal domain
PhaeoP54_03321	SM00354	helix_turn _helix lactose operon repressor
PhaeoP54_03330	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP54_03338	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03345	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_03348	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_03349	SM00448	cheY-homologous receiver domain
PhaeoP54_03349	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP54_03353	SM00861	Transketolase, pyrimidine binding domain
PhaeoP54_03357	SM00881	CoA binding domain
PhaeoP54_03359	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_03362	SM00411	bacterial (prokaryotic) histone like domain
PhaeoP54_03368	SM00829	Enoylreductase
PhaeoP54_03370	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_03375	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03377	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_03377	SM00895	PhaeoP54_03377
PhaeoP54_03379	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03390	SM00271	DnaJ molecular chaperone homology domain
PhaeoP54_03394	SM00957	SecA DEAD-like domain
PhaeoP54_03394	SM00958	SecA preprotein cross-linking domain
PhaeoP54_03401	SM00316	Ribosomal protein S1-like RNA-binding domain
PhaeoP54_03406	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_03419	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03420	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03425	SM00331	Sigma factor PP2C-like phosphatases
PhaeoP54_03425	SM00448	cheY-homologous receiver domain
PhaeoP54_03436	SM00919	Malic enzyme, NAD binding domain
PhaeoP54_03436	SM01274	PhaeoP54_03436
PhaeoP54_03437	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
PhaeoP54_03437	SM00534	ATPase domain of DNA mismatch repair MUTS family
PhaeoP54_03442	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP54_03444	SM00470	ParB-like nuclease domain
PhaeoP54_03447	SM01228	PhaeoP54_03447
PhaeoP54_03449	SM00357	Cold shock protein domain
PhaeoP54_03449	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03449	SM00959	Rho termination factor, N-terminal domain
PhaeoP54_03454	SM00479	PhaeoP54_03454
PhaeoP54_03457	SM00978	PhaeoP54_03457
PhaeoP54_03458	SM00925	MltA specific insert domain
PhaeoP54_03459	SM00463	Small MutS-related domain
PhaeoP54_03461	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03461	SM01086	C-terminal, D2-small domain, of ClpB protein
PhaeoP54_03475	SM00387	Histidine kinase-like ATPases
PhaeoP54_03475	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_03477	SM00448	cheY-homologous receiver domain
PhaeoP54_03480	SM00996	S-adenosyl-L-homocysteine hydrolase
PhaeoP54_03480	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
PhaeoP54_03515	SM00858	PhaeoP54_03515
PhaeoP54_03522	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03536	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03539	SM00116	Domain in cystathionine beta-synthase and other proteins.
PhaeoP54_03540	SM00474	3'-5' exonuclease
PhaeoP54_03557	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP54_03564	SM00235	Zinc-dependent metalloprotease
PhaeoP54_03568	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_03568	SM00895	PhaeoP54_03568
PhaeoP54_03575	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_03575	SM00419	helix_turn_helix, cAMP Regulatory protein
PhaeoP54_03575	SM00866	PhaeoP54_03575
PhaeoP54_03577	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP54_03577	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
PhaeoP54_03581	SM00316	Ribosomal protein S1-like RNA-binding domain
PhaeoP54_03581	SM00955	PhaeoP54_03581
PhaeoP54_03587	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
PhaeoP54_03587	SM01232	PhaeoP54_03587
PhaeoP54_03592	SM00470	ParB-like nuclease domain
PhaeoP54_03605	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP54_03605	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_03608	SM00344	helix_turn_helix ASNC type
PhaeoP54_03612	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
PhaeoP54_03617	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_03617	SM00895	PhaeoP54_03617
PhaeoP54_03619	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_03623	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03624	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03626	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP54_03626	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_03635	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03636	SM00422	helix_turn_helix, mercury resistance
PhaeoP54_03645	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP54_03646	SM00986	Uracil DNA glycosylase superfamily
PhaeoP54_03646	SM00987	UreE urease accessory protein, C-terminal domain 
PhaeoP54_03662	SM00331	Sigma factor PP2C-like phosphatases
PhaeoP54_03663	SM00387	Histidine kinase-like ATPases
PhaeoP54_03663	SM00911	HWE histidine kinase
PhaeoP54_03666	SM00344	helix_turn_helix ASNC type
PhaeoP54_03679	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03689	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03690	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03704	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03716	SM00420	helix_turn_helix, Deoxyribose operon repressor
PhaeoP54_03716	SM01134	PhaeoP54_03716
PhaeoP54_03719	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03720	SM00849	Metallo-beta-lactamase superfamily
PhaeoP54_03721	SM00855	Phosphoglycerate mutase family
PhaeoP54_03734	SM00327	von Willebrand factor (vWF) type A domain
PhaeoP54_03735	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03739	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP54_03739	SM00419	helix_turn_helix, cAMP Regulatory protein
PhaeoP54_03743	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_03744	SM00835	Cupin
PhaeoP54_03747	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_03762	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_03767	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP54_03770	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_03774	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03779	SM00448	cheY-homologous receiver domain
PhaeoP54_03780	SM00138	Methyltransferase, chemotaxis proteins 
PhaeoP54_03781	SM00260	Two component signalling adaptor domain
PhaeoP54_03782	SM00073	Histidine Phosphotransfer domain
PhaeoP54_03782	SM00260	Two component signalling adaptor domain
PhaeoP54_03782	SM00387	Histidine kinase-like ATPases
PhaeoP54_03782	SM01231	PhaeoP54_03782
PhaeoP54_03783	SM00448	cheY-homologous receiver domain
PhaeoP54_03785	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP54_03785	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP54_03790	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03794	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03796	SM00387	Histidine kinase-like ATPases
PhaeoP54_03796	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_03796	SM00448	cheY-homologous receiver domain
PhaeoP54_03798	SM00450	Rhodanese Homology Domain
PhaeoP54_03800	SM00984	UDP binding domain
PhaeoP54_03805	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03806	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP54_03810	SM00470	ParB-like nuclease domain
PhaeoP54_03821	SM00470	ParB-like nuclease domain
PhaeoP54_03840	SM00422	helix_turn_helix, mercury resistance
PhaeoP54_03864	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03870	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_03877	SM00422	helix_turn_helix, mercury resistance
PhaeoP54_03891	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP54_03891	SM00529	Helix-turn-helix diphteria tox regulatory element
PhaeoP54_03894	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03900	SM00857	Resolvase, N terminal domain
PhaeoP54_03903	SM00470	ParB-like nuclease domain
PhaeoP54_03905	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP54_03905	SM00387	Histidine kinase-like ATPases
PhaeoP54_03905	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP54_03908	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP54_03913	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_03914	SM00421	helix_turn_helix, Lux Regulon
PhaeoP54_03917	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03927	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03930	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP54_03931	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP54_03936	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP54_03938	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP54_03944	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_03948	SM00354	helix_turn _helix lactose operon repressor
PhaeoP54_03970	SM00829	Enoylreductase
PhaeoP54_03975	SM00829	Enoylreductase
PhaeoP54_03980	SM00857	Resolvase, N terminal domain
PhaeoP54_03989	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_04015	SM00650	Ribosomal RNA adenine dimethylases
PhaeoP54_04022	SM00318	Staphylococcal nuclease homologues
PhaeoP54_04030	SM00470	ParB-like nuclease domain
PhaeoP54_04036	SM00470	ParB-like nuclease domain
PhaeoP54_04037	SM00984	UDP binding domain
PhaeoP54_04042	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_04050	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_04070	SM00382	ATPases associated with a variety of cellular activities
PhaeoP54_04072	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP54_04072	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
PhaeoP54_04073	SM00823	Phosphopantetheine attachment site
PhaeoP54_04076	SM00421	helix_turn_helix, Lux Regulon
PhaeoP54_04078	SM00421	helix_turn_helix, Lux Regulon
PhaeoP54_04081	SM00382	ATPases associated with a variety of cellular activities
