locus-tag	class	description
PhaeoP97_00001	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
PhaeoP97_00002	COG0592	DNA-directed DNA polymerase activity
PhaeoP97_00003	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
PhaeoP97_00007	COG0187	DNA topoisomerase II activity
PhaeoP97_00026	COG3443	Belongs to the bacterial solute-binding protein 9 family
PhaeoP97_00029	COG0583	DNA-binding transcription factor activity
PhaeoP97_00032	COG2116	formate transmembrane transporter activity
PhaeoP97_00035	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
PhaeoP97_00037	COG1959	2 iron, 2 sulfur cluster binding
PhaeoP97_00039	COG2010	Cytochrome c
PhaeoP97_00046	COG0753	catalase activity
PhaeoP97_00047	COG1846	Transcriptional regulator
PhaeoP97_00048	COG0753	catalase activity
PhaeoP97_00056	COG1609	Transcriptional regulator
PhaeoP97_00057	COG3214	Protein conserved in bacteria
PhaeoP97_00061	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
PhaeoP97_00062	COG0179	Fumarylacetoacetate (FAA) hydrolase
PhaeoP97_00067	COG1335	isochorismatase
PhaeoP97_00068	COG2198	Histidine kinase
PhaeoP97_00068	COG5002	protein histidine kinase activity
PhaeoP97_00068	COG0784	Response regulator, receiver
PhaeoP97_00069	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
PhaeoP97_00076	COG0747	negative chemotaxis
PhaeoP97_00077	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
PhaeoP97_00078	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
PhaeoP97_00079	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
PhaeoP97_00081	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
PhaeoP97_00082	COG3474	cytochrome
PhaeoP97_00083	COG3191	aminopeptidase activity
PhaeoP97_00088	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
PhaeoP97_00092	COG0514	ATP-dependent DNA helicase (RecQ)
PhaeoP97_00093	COG3022	response to hydroperoxide
PhaeoP97_00094	COG5002	protein histidine kinase activity
PhaeoP97_00094	COG2205	protein histidine kinase activity
PhaeoP97_00094	COG0784	Response regulator, receiver
PhaeoP97_00095	COG2373	Large extracellular alpha-helical protein
PhaeoP97_00096	COG4953	penicillin-binding protein 1C
PhaeoP97_00100	COG0714	Associated with various cellular activities
PhaeoP97_00102	COG3622	Belongs to the hyi family
PhaeoP97_00104	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PhaeoP97_00104	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PhaeoP97_00106	COG3300	MHYT domain
PhaeoP97_00106	COG5001	Diguanylate cyclase
PhaeoP97_00108	COG1131	(ABC) transporter
PhaeoP97_00114	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
PhaeoP97_00116	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
PhaeoP97_00117	COG2271	Major facilitator Superfamily
PhaeoP97_00118	COG2423	ornithine cyclodeaminase activity
PhaeoP97_00121	COG1671	Belongs to the UPF0178 family
PhaeoP97_00123	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
PhaeoP97_00125	COG1309	transcriptional regulator
PhaeoP97_00129	COG0791	NLP P60 protein
PhaeoP97_00130	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
PhaeoP97_00132	COG0288	reversible hydration of carbon dioxide
PhaeoP97_00135	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
PhaeoP97_00140	COG1129	ABC transporter
PhaeoP97_00141	COG0411	ABC transporter
PhaeoP97_00146	COG2379	hydroxypyruvate reductase
PhaeoP97_00148	COG1349	DNA-binding transcription factor activity
PhaeoP97_00149	COG1283	sodium-dependent phosphate transmembrane transporter activity
PhaeoP97_00152	COG3842	ATPase activity
PhaeoP97_00162	COG4774	siderophore transport
PhaeoP97_00166	COG0811	peptide transport
PhaeoP97_00168	COG1120	ATPase activity
PhaeoP97_00169	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PhaeoP97_00170	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PhaeoP97_00178	COG2116	formate transmembrane transporter activity
PhaeoP97_00180	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PhaeoP97_00182	COG0789	Transcriptional regulator
PhaeoP97_00184	COG3591	Belongs to the peptidase S1B family
PhaeoP97_00185	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PhaeoP97_00186	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
PhaeoP97_00189	COG2766	serine protein kinase
PhaeoP97_00190	COG2718	Belongs to the UPF0229 family
PhaeoP97_00191	COG2719	SpoVR family
PhaeoP97_00192	COG1802	Transcriptional regulator
PhaeoP97_00193	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
PhaeoP97_00196	COG3246	L-lysine catabolic process to acetate
PhaeoP97_00197	COG3485	protocatechuate 3,4-dioxygenase
PhaeoP97_00198	COG3485	protocatechuate 3,4-dioxygenase
PhaeoP97_00199	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
PhaeoP97_00200	COG0583	DNA-binding transcription factor activity
PhaeoP97_00201	COG0559	Belongs to the binding-protein-dependent transport system permease family
PhaeoP97_00202	COG4214	carbohydrate transport
PhaeoP97_00205	COG1022	Amp-dependent synthetase and ligase
PhaeoP97_00260	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
PhaeoP97_00266	COG0635	Involved in the biosynthesis of porphyrin-containing compound
PhaeoP97_00268	COG0625	glutathione transferase activity
PhaeoP97_00269	COG0346	lactoylglutathione lyase activity
PhaeoP97_00273	COG0179	Fumarylacetoacetate (FAA) hydrolase
PhaeoP97_00274	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
PhaeoP97_00279	COG0489	protein tyrosine kinase activity
PhaeoP97_00279	COG2151	metal-sulfur cluster biosynthetic enzyme
PhaeoP97_00280	COG0254	rRNA binding
PhaeoP97_00281	COG0335	large ribosomal subunit rRNA binding
PhaeoP97_00282	COG0336	Belongs to the RNA methyltransferase TrmD family
PhaeoP97_00283	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
PhaeoP97_00284	COG0778	Nitroreductase
PhaeoP97_00285	COG0228	four-way junction DNA binding
PhaeoP97_00288	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PhaeoP97_00290	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
PhaeoP97_00292	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
PhaeoP97_00299	COG0356	it plays a direct role in the translocation of protons across the membrane
PhaeoP97_00300	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PhaeoP97_00301	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
PhaeoP97_00302	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
PhaeoP97_00303	COG2186	Transcriptional regulator
PhaeoP97_00309	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
PhaeoP97_00311	COG0435	Glutathione S-transferase
PhaeoP97_00313	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
PhaeoP97_00314	COG0242	peptide deformylase activity
PhaeoP97_00315	COG0242	peptide deformylase activity
PhaeoP97_00316	COG0242	peptide deformylase activity
PhaeoP97_00317	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
PhaeoP97_00319	COG2860	membrane
PhaeoP97_00320	COG0328	RNA-DNA hybrid ribonuclease activity
PhaeoP97_00321	COG4106	trans-aconitate 2-methyltransferase activity
PhaeoP97_00324	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
PhaeoP97_00326	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
PhaeoP97_00327	COG1758	RNA polymerase activity
PhaeoP97_00328	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PhaeoP97_00330	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
PhaeoP97_00331	COG0736	holo-[acyl-carrier-protein] synthase activity
PhaeoP97_00332	COG0681	Belongs to the peptidase S26 family
PhaeoP97_00333	COG0571	ribonuclease III activity
PhaeoP97_00334	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
PhaeoP97_00336	COG1381	Involved in DNA repair and RecF pathway recombination
PhaeoP97_00340	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
PhaeoP97_00341	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
PhaeoP97_00342	COG0745	RESPONSE REGULATOR receiver
PhaeoP97_00343	COG2205	protein histidine kinase activity
PhaeoP97_00344	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
PhaeoP97_00345	COG1660	Displays ATPase and GTPase activities
PhaeoP97_00347	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
PhaeoP97_00349	COG1250	3-hydroxyacyl-CoA dehydrogenase
PhaeoP97_00353	COG2096	Adenosyltransferase
PhaeoP97_00355	COG0300	oxidoreductase activity
PhaeoP97_00357	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PhaeoP97_00360	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
PhaeoP97_00368	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
PhaeoP97_00369	COG0081	regulation of translation
PhaeoP97_00370	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
PhaeoP97_00371	COG0222	ribosome binding
PhaeoP97_00372	COG0085	RNA polymerase activity
PhaeoP97_00373	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PhaeoP97_00378	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
PhaeoP97_00379	COG0049	tRNA binding
PhaeoP97_00380	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
PhaeoP97_00381	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
PhaeoP97_00383	COG0051	transcription antitermination factor activity, RNA binding
PhaeoP97_00384	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
PhaeoP97_00385	COG0088	Forms part of the polypeptide exit tunnel
PhaeoP97_00386	COG0089	rRNA binding
PhaeoP97_00388	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
PhaeoP97_00389	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
PhaeoP97_00390	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
PhaeoP97_00391	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
PhaeoP97_00392	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
PhaeoP97_00397	COG0255	Belongs to the universal ribosomal protein uL29 family
PhaeoP97_00398	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
PhaeoP97_00399	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
PhaeoP97_00400	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
PhaeoP97_00401	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
PhaeoP97_00402	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
PhaeoP97_00403	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
PhaeoP97_00404	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
PhaeoP97_00405	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
PhaeoP97_00406	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
PhaeoP97_00407	COG1841	ribosomal large subunit assembly
PhaeoP97_00411	COG0200	Binds to the 23S rRNA
PhaeoP97_00412	COG0201	protein transport
PhaeoP97_00414	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
PhaeoP97_00415	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
PhaeoP97_00416	COG0202	RNA polymerase activity
PhaeoP97_00417	COG0203	ribosomal protein L17
PhaeoP97_00418	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
PhaeoP97_00419	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
PhaeoP97_00420	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
PhaeoP97_00421	COG0564	pseudouridine synthase activity
PhaeoP97_00422	COG0546	phosphoglycolate phosphatase activity
PhaeoP97_00424	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PhaeoP97_00425	COG4597	amino acid ABC transporter
PhaeoP97_00426	COG0765	amino acid transport
PhaeoP97_00427	COG1126	abc transporter atp-binding protein
PhaeoP97_00431	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
PhaeoP97_00432	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_00433	COG0218	Necessary for normal cell division and for the maintenance of normal septation
PhaeoP97_00435	COG0706	membrane insertase activity
PhaeoP97_00437	COG0037	tRNA processing
PhaeoP97_00439	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
PhaeoP97_00440	COG0594	ribonuclease P activity
PhaeoP97_00441	COG0230	Belongs to the bacterial ribosomal protein bL34 family
PhaeoP97_00444	COG4191	Histidine kinase
PhaeoP97_00453	COG0825	malonyl-CoA metabolic process
PhaeoP97_00456	COG1522	sequence-specific DNA binding
PhaeoP97_00458	COG2301	Belongs to the HpcH HpaI aldolase family
PhaeoP97_00460	COG4948	Mandelate Racemase Muconate Lactonizing
PhaeoP97_00463	COG2130	NADP-dependent
PhaeoP97_00464	COG1309	transcriptional regulator
PhaeoP97_00465	COG0686	Belongs to the AlaDH PNT family
PhaeoP97_00466	COG1522	sequence-specific DNA binding
PhaeoP97_00468	COG2326	polyphosphate kinase activity
PhaeoP97_00469	COG0828	Belongs to the bacterial ribosomal protein bS21 family
PhaeoP97_00476	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
PhaeoP97_00477	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
PhaeoP97_00484	COG0737	Belongs to the 5'-nucleotidase family
PhaeoP97_00485	COG2816	NAD+ diphosphatase activity
PhaeoP97_00487	COG0077	Prephenate dehydratase
PhaeoP97_00487	COG1605	Chorismate mutase
PhaeoP97_00489	COG4166	transmembrane transport
PhaeoP97_00490	COG4174	ABC transporter (Permease)
PhaeoP97_00491	COG4239	(ABC) transporter, permease
PhaeoP97_00492	COG4172	Belongs to the ABC transporter superfamily
PhaeoP97_00493	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PhaeoP97_00498	COG2010	Cytochrome c
PhaeoP97_00500	COG0348	domain, Protein
PhaeoP97_00503	COG1686	Belongs to the peptidase S11 family
PhaeoP97_00506	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
PhaeoP97_00507	COG2813	Specifically methylates the guanine in position
PhaeoP97_00509	COG0408	coproporphyrinogen oxidase activity
PhaeoP97_00511	COG0181	hydroxymethylbilane synthase activity
PhaeoP97_00512	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
PhaeoP97_00514	COG1804	L-carnitine dehydratase bile acid-inducible protein F
PhaeoP97_00517	COG0124	histidyl-tRNA synthetase
PhaeoP97_00519	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
PhaeoP97_00522	COG0697	spore germination
PhaeoP97_00523	COG0473	3-isopropylmalate dehydrogenase activity
PhaeoP97_00526	COG0066	3-isopropylmalate dehydratase activity
PhaeoP97_00527	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
PhaeoP97_00528	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
PhaeoP97_00528	COG3264	Mechanosensitive ion channel
PhaeoP97_00529	COG0799	negative regulation of ribosome biogenesis
PhaeoP97_00530	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
PhaeoP97_00533	COG0277	FAD linked oxidase domain protein
PhaeoP97_00534	COG0277	FAD linked oxidase domain protein
PhaeoP97_00535	COG0247	lactate metabolic process
PhaeoP97_00536	COG3591	Belongs to the peptidase S1B family
PhaeoP97_00537	COG0071	Belongs to the small heat shock protein (HSP20) family
PhaeoP97_00542	COG1183	phosphatidylcholine synthase activity
PhaeoP97_00557	COG0129	dihydroxy-acid dehydratase activity
PhaeoP97_00558	COG3135	benzoate transporter
PhaeoP97_00559	COG1396	sequence-specific DNA binding
PhaeoP97_00561	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
PhaeoP97_00563	COG2897	thiosulfate sulfurtransferase activity
PhaeoP97_00565	COG0004	ammonium transporteR
PhaeoP97_00566	COG0347	Belongs to the P(II) protein family
PhaeoP97_00567	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
PhaeoP97_00572	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PhaeoP97_00574	COG0584	glycerophosphoryl diester phosphodiesterase
PhaeoP97_00576	COG2154	pterin-4-alpha-carbinolamine dehydratase
PhaeoP97_00577	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
PhaeoP97_00577	COG0678	peroxiredoxin activity
PhaeoP97_00579	COG0742	ribosomal rna small subunit methyltransferase
PhaeoP97_00580	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
PhaeoP97_00582	COG0024	Methionine aminopeptidase
PhaeoP97_00583	COG0668	transmembrane transport
PhaeoP97_00584	COG1489	DNA binding
PhaeoP97_00585	COG1546	Belongs to the CinA family
PhaeoP97_00585	COG1058	Belongs to the CinA family
PhaeoP97_00588	COG2885	chlorophyll binding
PhaeoP97_00589	COG0583	DNA-binding transcription factor activity
PhaeoP97_00592	COG2329	Antibiotic biosynthesis monooxygenase
PhaeoP97_00594	COG0693	protein deglycase activity
PhaeoP97_00595	COG0446	pyridine nucleotide-disulphide oxidoreductase
PhaeoP97_00595	COG1902	pentaerythritol trinitrate reductase activity
PhaeoP97_00596	COG1051	belongs to the nudix hydrolase family
PhaeoP97_00598	COG0697	spore germination
PhaeoP97_00599	COG1846	Transcriptional regulator
PhaeoP97_00600	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PhaeoP97_00601	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
PhaeoP97_00609	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PhaeoP97_00609	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
PhaeoP97_00611	COG0741	lytic transglycosylase activity
PhaeoP97_00612	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PhaeoP97_00614	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
PhaeoP97_00615	COG3302	dmso reductase anchor subunit
PhaeoP97_00616	COG0437	4 iron, 4 sulfur cluster binding
PhaeoP97_00618	COG0243	molybdopterin cofactor binding
PhaeoP97_00619	COG0372	Belongs to the citrate synthase family
PhaeoP97_00621	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
PhaeoP97_00623	COG0028	Belongs to the TPP enzyme family
PhaeoP97_00624	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PhaeoP97_00629	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
PhaeoP97_00631	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
PhaeoP97_00633	COG0121	glutamine amidotransferase
PhaeoP97_00635	COG1984	allophanate hydrolase subunit 2
PhaeoP97_00636	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
PhaeoP97_00638	COG4251	negative regulation of phosphorylation
PhaeoP97_00649	COG1959	2 iron, 2 sulfur cluster binding
PhaeoP97_00650	COG0523	cobalamin synthesis protein
PhaeoP97_00653	COG0577	efflux transmembrane transporter activity
PhaeoP97_00653	COG1136	(ABC) transporter
PhaeoP97_00658	COG0747	negative chemotaxis
PhaeoP97_00660	COG0601	transmembrane transport
PhaeoP97_00662	COG0444	Belongs to the ABC transporter superfamily
PhaeoP97_00666	COG1280	lysine exporter protein (LysE YggA)
PhaeoP97_00668	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
PhaeoP97_00670	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PhaeoP97_00678	COG0405	Gamma-glutamyltransferase
PhaeoP97_00679	COG0277	FAD linked oxidase domain protein
PhaeoP97_00681	COG0673	inositol 2-dehydrogenase activity
PhaeoP97_00685	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
PhaeoP97_00692	COG1529	Aldehyde oxidase and xanthine dehydrogenase
PhaeoP97_00694	COG0587	DNA-directed DNA polymerase activity
PhaeoP97_00696	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
PhaeoP97_00698	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
PhaeoP97_00708	COG1072	(Pantothenic acid kinase))
PhaeoP97_00710	COG0800	Aldolase
PhaeoP97_00711	COG0129	dihydroxy-acid dehydratase activity
PhaeoP97_00712	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
PhaeoP97_00713	COG0166	Belongs to the GPI family
PhaeoP97_00715	COG0673	inositol 2-dehydrogenase activity
PhaeoP97_00716	COG0395	ABC-type sugar transport system, permease component
PhaeoP97_00719	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
PhaeoP97_00722	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
PhaeoP97_00723	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
PhaeoP97_00725	COG1804	L-carnitine dehydratase bile acid-inducible protein F
PhaeoP97_00727	COG0463	Glycosyl transferase, family 2
PhaeoP97_00732	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
PhaeoP97_00733	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
PhaeoP97_00735	COG1126	abc transporter atp-binding protein
PhaeoP97_00739	COG0489	protein tyrosine kinase activity
PhaeoP97_00746	COG3383	formate dehydrogenase (NAD+) activity
PhaeoP97_00746	COG0243	molybdopterin cofactor binding
PhaeoP97_00747	COG0437	4 iron, 4 sulfur cluster binding
PhaeoP97_00752	COG3852	Histidine kinase
PhaeoP97_00753	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_00758	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
PhaeoP97_00761	COG1595	DNA-templated transcription, initiation
PhaeoP97_00762	COG3806	Anti-sigma factor
PhaeoP97_00774	COG1648	precorrin-2 dehydrogenase activity
PhaeoP97_00774	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
PhaeoP97_00775	COG1797	cobyrinic acid a,c-diamide synthase activity
PhaeoP97_00776	COG2875	Belongs to the precorrin methyltransferase family
PhaeoP97_00779	COG2099	Precorrin-6x reductase
PhaeoP97_00799	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PhaeoP97_00802	COG0667	Aldo Keto reductase
PhaeoP97_00804	COG3246	L-lysine catabolic process to acetate
PhaeoP97_00806	COG1250	3-hydroxyacyl-CoA dehydrogenase
PhaeoP97_00806	COG0824	Thioesterase
PhaeoP97_00807	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_00815	COG1595	DNA-templated transcription, initiation
PhaeoP97_00818	COG3706	GGDEF domain
PhaeoP97_00818	COG0745	RESPONSE REGULATOR receiver
PhaeoP97_00821	COG5598	trimethylamine methyltransferase
PhaeoP97_00822	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
PhaeoP97_00824	COG5001	Diguanylate cyclase
PhaeoP97_00824	COG3447	MASE1 domain protein
PhaeoP97_00824	COG5002	protein histidine kinase activity
PhaeoP97_00828	COG1494	fructose-1,6-bisphosphatase
PhaeoP97_00833	COG1741	Belongs to the pirin family
PhaeoP97_00838	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
PhaeoP97_00839	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PhaeoP97_00841	COG0446	pyridine nucleotide-disulphide oxidoreductase
PhaeoP97_00841	COG0404	The glycine cleavage system catalyzes the degradation of glycine
PhaeoP97_00844	COG0358	DNA primase activity
PhaeoP97_00845	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
PhaeoP97_00847	COG4221	oxidoreductase activity
PhaeoP97_00850	COG0432	Pfam Uncharacterised protein family UPF0047
PhaeoP97_00851	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
PhaeoP97_00852	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PhaeoP97_00852	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PhaeoP97_00859	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
PhaeoP97_00860	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PhaeoP97_00866	COG0564	pseudouridine synthase activity
PhaeoP97_00867	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
PhaeoP97_00868	COG0840	transmembrane signaling receptor activity
PhaeoP97_00869	COG1992	Thiamine-phosphate synthase
PhaeoP97_00869	COG0351	phosphomethylpyrimidine kinase
PhaeoP97_00870	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
PhaeoP97_00872	COG2022	thiamine diphosphate biosynthetic process
PhaeoP97_00875	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
PhaeoP97_00877	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
PhaeoP97_00879	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
PhaeoP97_00883	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
PhaeoP97_00883	COG1618	nucleotide phosphatase activity, acting on free nucleotides
PhaeoP97_00885	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PhaeoP97_00887	COG1832	CoA-binding protein
PhaeoP97_00888	COG0140	phosphoribosyl-ATP diphosphatase activity
PhaeoP97_00889	COG0107	imidazoleglycerol-phosphate synthase activity
PhaeoP97_00893	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
PhaeoP97_00898	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
PhaeoP97_00899	COG0131	Imidazoleglycerol-phosphate dehydratase
PhaeoP97_00901	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
PhaeoP97_00908	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
PhaeoP97_00910	COG1304	FMN binding
PhaeoP97_00912	COG0210	DNA helicase
PhaeoP97_00914	COG0489	protein tyrosine kinase activity
PhaeoP97_00915	COG2001	Belongs to the MraZ family
PhaeoP97_00916	COG0275	rRNA processing
PhaeoP97_00919	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
PhaeoP97_00921	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
PhaeoP97_00922	COG2066	Belongs to the glutaminase family
PhaeoP97_00923	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
PhaeoP97_00925	COG1846	Transcriptional regulator
PhaeoP97_00927	COG2081	HI0933 family
PhaeoP97_00929	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
PhaeoP97_00930	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
PhaeoP97_00933	COG0812	UDP-N-acetylmuramate dehydrogenase activity
PhaeoP97_00935	COG1181	Belongs to the D-alanine--D-alanine ligase family
PhaeoP97_00936	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
PhaeoP97_00937	COG0849	cell division
PhaeoP97_00938	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
PhaeoP97_00940	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PhaeoP97_00941	COG0497	DNA recombination
PhaeoP97_00956	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PhaeoP97_00957	COG2183	response to ionizing radiation
PhaeoP97_00960	COG0308	aminopeptidase N
PhaeoP97_00962	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
PhaeoP97_00964	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
PhaeoP97_00965	COG2010	Cytochrome c
PhaeoP97_00965	COG1529	Aldehyde oxidase and xanthine dehydrogenase
PhaeoP97_00967	COG1309	transcriptional regulator
PhaeoP97_00968	COG3483	tryptophan 2,3-dioxygenase activity
PhaeoP97_00971	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_00975	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
PhaeoP97_00980	COG2391	methyltransferase activity
PhaeoP97_00981	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PhaeoP97_00982	COG0601	transmembrane transport
PhaeoP97_00984	COG4172	Belongs to the ABC transporter superfamily
PhaeoP97_00985	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
PhaeoP97_00986	COG1473	amidohydrolase
PhaeoP97_00988	COG1473	amidohydrolase
PhaeoP97_00989	COG0438	transferase activity, transferring glycosyl groups
PhaeoP97_00990	COG1519	Transferase
PhaeoP97_00991	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
PhaeoP97_00995	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
PhaeoP97_00999	COG1960	acyl-CoA dehydrogenase activity
PhaeoP97_01000	COG3047	cAMP biosynthetic process
PhaeoP97_01001	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
PhaeoP97_01003	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
PhaeoP97_01006	COG1024	Enoyl-CoA hydratase
PhaeoP97_01008	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
PhaeoP97_01009	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
PhaeoP97_01011	COG0649	NAD binding
PhaeoP97_01019	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
PhaeoP97_01020	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
PhaeoP97_01023	COG0713	ATP synthesis coupled electron transport
PhaeoP97_01028	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
PhaeoP97_01031	COG0513	Belongs to the DEAD box helicase family
PhaeoP97_01034	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
PhaeoP97_01037	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_01038	COG4335	DNA alkylation repair
PhaeoP97_01039	COG3842	ATPase activity
PhaeoP97_01042	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
PhaeoP97_01043	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
PhaeoP97_01044	COG0805	protein transport
PhaeoP97_01045	COG0698	ribose 5-phosphate isomerase
PhaeoP97_01048	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
PhaeoP97_01049	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
PhaeoP97_01053	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
PhaeoP97_01060	COG1127	ABC transporter
PhaeoP97_01061	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
PhaeoP97_01062	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
PhaeoP97_01063	COG0305	Participates in initiation and elongation during chromosome replication
PhaeoP97_01064	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
PhaeoP97_01065	COG0418	dihydroorotase activity
PhaeoP97_01071	COG1162	GTPase activity
PhaeoP97_01077	COG3618	amidohydrolase
PhaeoP97_01079	COG3842	ATPase activity
PhaeoP97_01081	COG1175	transmembrane transport
PhaeoP97_01082	COG0395	ABC-type sugar transport system, permease component
PhaeoP97_01088	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_01097	COG0542	response to heat
PhaeoP97_01098	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
PhaeoP97_01099	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PhaeoP97_01106	COG0316	Belongs to the HesB IscA family
PhaeoP97_01107	COG0232	Belongs to the dGTPase family. Type 2 subfamily
PhaeoP97_01109	COG0018	arginyl-trna synthetase
PhaeoP97_01111	COG1472	Belongs to the glycosyl hydrolase 3 family
PhaeoP97_01112	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
PhaeoP97_01113	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
PhaeoP97_01118	COG0776	regulation of translation
PhaeoP97_01119	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PhaeoP97_01120	COG0416	fatty acid biosynthetic process
PhaeoP97_01121	COG0333	Belongs to the bacterial ribosomal protein bL32 family
PhaeoP97_01130	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
PhaeoP97_01131	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
PhaeoP97_01133	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
PhaeoP97_01135	COG0513	Belongs to the DEAD box helicase family
PhaeoP97_01137	COG0697	spore germination
PhaeoP97_01138	COG0148	phosphopyruvate hydratase activity
PhaeoP97_01143	COG0456	acetyltransferase
PhaeoP97_01143	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
PhaeoP97_01144	COG1957	nucleoside hydrolase
PhaeoP97_01145	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
PhaeoP97_01146	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PhaeoP97_01147	COG0174	glutamine synthetase
PhaeoP97_01148	COG0518	GMP synthase (glutamine-hydrolyzing) activity
PhaeoP97_01148	COG0519	Catalyzes the synthesis of GMP from XMP
PhaeoP97_01149	COG0174	glutamine synthetase
PhaeoP97_01150	COG4160	amino acid transport
PhaeoP97_01151	COG4215	(ABC) transporter
PhaeoP97_01158	COG0525	valine-tRNA ligase activity
PhaeoP97_01166	COG0583	DNA-binding transcription factor activity
PhaeoP97_01167	COG0483	inositol monophosphate 1-phosphatase activity
PhaeoP97_01171	COG1522	sequence-specific DNA binding
PhaeoP97_01177	COG0840	transmembrane signaling receptor activity
PhaeoP97_01184	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
PhaeoP97_01185	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
PhaeoP97_01186	COG0154	amidase activity
PhaeoP97_01188	COG0281	malic enzyme
PhaeoP97_01188	COG0280	phosphate acetyltransferase
PhaeoP97_01190	COG0295	cytidine deaminase activity
PhaeoP97_01192	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
PhaeoP97_01193	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
PhaeoP97_01196	COG0318	PFAM AMP-dependent synthetase and ligase
PhaeoP97_01199	COG1024	Enoyl-CoA hydratase
PhaeoP97_01199	COG1250	3-hydroxyacyl-CoA dehydrogenase
PhaeoP97_01200	COG0183	Belongs to the thiolase family
PhaeoP97_01201	COG0625	glutathione transferase activity
PhaeoP97_01202	COG1960	acyl-CoA dehydrogenase activity
PhaeoP97_01204	COG1960	acyl-CoA dehydrogenase activity
PhaeoP97_01205	COG0789	Transcriptional regulator
PhaeoP97_01209	COG0534	Mate efflux family protein
PhaeoP97_01213	COG0737	Belongs to the 5'-nucleotidase family
PhaeoP97_01216	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
PhaeoP97_01217	COG0709	Synthesizes selenophosphate from selenide and ATP
PhaeoP97_01218	COG1320	monovalent cation:proton antiporter activity
PhaeoP97_01219	COG2212	antiporter activity
PhaeoP97_01221	COG0651	ATP synthesis coupled electron transport
PhaeoP97_01222	COG1006	Multisubunit Na H antiporter MnhC subunit
PhaeoP97_01223	COG2111	Na H antiporter
PhaeoP97_01223	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
PhaeoP97_01226	COG2943	transferase activity, transferring hexosyl groups
PhaeoP97_01227	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
PhaeoP97_01230	COG1804	L-carnitine dehydratase bile acid-inducible protein F
PhaeoP97_01233	COG2391	methyltransferase activity
PhaeoP97_01236	COG0785	Cytochrome C biogenesis protein
PhaeoP97_01241	COG3258	Cytochrome c
PhaeoP97_01248	COG0740	serine-type endopeptidase activity
PhaeoP97_01249	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
PhaeoP97_01255	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
PhaeoP97_01256	COG0439	Biotin carboxylase
PhaeoP97_01260	COG0410	ABC transporter
PhaeoP97_01263	COG0559	Belongs to the binding-protein-dependent transport system permease family
PhaeoP97_01266	COG0745	RESPONSE REGULATOR receiver
PhaeoP97_01276	COG3750	Belongs to the UPF0335 family
PhaeoP97_01281	COG1309	transcriptional regulator
PhaeoP97_01284	COG1116	anion transmembrane transporter activity
PhaeoP97_01285	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PhaeoP97_01286	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PhaeoP97_01287	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PhaeoP97_01291	COG0563	adenylate kinase activity
PhaeoP97_01292	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
PhaeoP97_01301	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PhaeoP97_01302	COG2205	protein histidine kinase activity
PhaeoP97_01303	COG0673	inositol 2-dehydrogenase activity
PhaeoP97_01304	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PhaeoP97_01306	COG4989	oxidoreductase activity
PhaeoP97_01310	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
PhaeoP97_01317	COG1175	transmembrane transport
PhaeoP97_01319	COG1609	Transcriptional regulator
PhaeoP97_01322	COG0583	DNA-binding transcription factor activity
PhaeoP97_01324	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
PhaeoP97_01325	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
PhaeoP97_01327	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
PhaeoP97_01329	COG2166	iron-sulfur cluster assembly
PhaeoP97_01333	COG5012	cobalamin binding
PhaeoP97_01335	COG1410	methionine synthase
PhaeoP97_01335	COG0646	methionine synthase
PhaeoP97_01336	COG0392	lysyltransferase activity
PhaeoP97_01338	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
PhaeoP97_01339	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PhaeoP97_01340	COG0047	phosphoribosylformylglycinamidine synthase activity
PhaeoP97_01342	COG2204	response regulator
PhaeoP97_01343	COG1530	ribonuclease E activity
PhaeoP97_01345	COG0425	Belongs to the sulfur carrier protein TusA family
PhaeoP97_01346	COG0785	Cytochrome C biogenesis protein
PhaeoP97_01348	COG2124	cytochrome p450
PhaeoP97_01351	COG0114	fumarate hydratase activity
PhaeoP97_01354	COG2059	Chromate
PhaeoP97_01358	COG0577	efflux transmembrane transporter activity
PhaeoP97_01358	COG1136	(ABC) transporter
PhaeoP97_01371	COG0318	PFAM AMP-dependent synthetase and ligase
PhaeoP97_01375	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
PhaeoP97_01376	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PhaeoP97_01378	COG1960	acyl-CoA dehydrogenase activity
PhaeoP97_01379	COG2091	lysine biosynthetic process via aminoadipic acid
PhaeoP97_01381	COG1917	Cupin 2, conserved barrel domain protein
PhaeoP97_01381	COG2207	Transcriptional regulator
PhaeoP97_01383	COG2186	Transcriptional regulator
PhaeoP97_01384	COG0604	alcohol dehydrogenase
PhaeoP97_01385	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
PhaeoP97_01387	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PhaeoP97_01388	COG0415	Belongs to the DNA photolyase family
PhaeoP97_01389	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
PhaeoP97_01391	COG0494	nUDIX hydrolase
PhaeoP97_01393	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
PhaeoP97_01393	COG3264	Mechanosensitive ion channel
PhaeoP97_01394	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
PhaeoP97_01396	COG1609	Transcriptional regulator
PhaeoP97_01397	COG2115	Belongs to the xylose isomerase family
PhaeoP97_01398	COG1070	Carbohydrate kinase
PhaeoP97_01402	COG4536	flavin adenine dinucleotide binding
PhaeoP97_01403	COG4974	Belongs to the 'phage' integrase family
PhaeoP97_01406	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
PhaeoP97_01407	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
PhaeoP97_01408	COG0629	single-stranded DNA binding
PhaeoP97_01409	COG0739	heme binding
PhaeoP97_01409	COG0741	lytic transglycosylase activity
PhaeoP97_01409	COG1196	nuclear chromosome segregation
PhaeoP97_01411	COG4172	Belongs to the ABC transporter superfamily
PhaeoP97_01413	COG0601	transmembrane transport
PhaeoP97_01416	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
PhaeoP97_01417	COG0528	UMP kinase activity
PhaeoP97_01418	COG0233	cytoplasmic translational termination
PhaeoP97_01419	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
PhaeoP97_01420	COG0575	Belongs to the CDS family
PhaeoP97_01421	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
PhaeoP97_01422	COG0750	zinc metalloprotease
PhaeoP97_01424	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PhaeoP97_01426	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
PhaeoP97_01427	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PhaeoP97_01428	COG3494	Protein of unknown function (DUF1009)
PhaeoP97_01429	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PhaeoP97_01430	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PhaeoP97_01431	COG0482	sulfurtransferase activity
PhaeoP97_01434	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PhaeoP97_01438	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
PhaeoP97_01439	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PhaeoP97_01441	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
PhaeoP97_01444	COG0688	phosphatidylethanolamine metabolic process
PhaeoP97_01445	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
PhaeoP97_01446	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
PhaeoP97_01448	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PhaeoP97_01450	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
PhaeoP97_01452	COG1309	transcriptional regulator
PhaeoP97_01453	COG2326	polyphosphate kinase activity
PhaeoP97_01455	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
PhaeoP97_01458	COG0697	spore germination
PhaeoP97_01460	COG0519	Catalyzes the synthesis of GMP from XMP
PhaeoP97_01460	COG0518	GMP synthase (glutamine-hydrolyzing) activity
PhaeoP97_01465	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
PhaeoP97_01466	COG1473	amidohydrolase
PhaeoP97_01469	COG2867	negative regulation of translational initiation
PhaeoP97_01470	COG0004	ammonium transporteR
PhaeoP97_01471	COG1058	Belongs to the CinA family
PhaeoP97_01471	COG1546	Belongs to the CinA family
PhaeoP97_01472	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
PhaeoP97_01473	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
PhaeoP97_01473	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
PhaeoP97_01474	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
PhaeoP97_01475	COG3852	Histidine kinase
PhaeoP97_01476	COG2204	response regulator
PhaeoP97_01477	COG5000	phosphorelay sensor kinase activity
PhaeoP97_01478	COG2204	response regulator
PhaeoP97_01480	COG0569	domain protein
PhaeoP97_01481	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
PhaeoP97_01482	COG1923	regulation of RNA biosynthetic process
PhaeoP97_01483	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
PhaeoP97_01485	COG2084	Dehydrogenase
PhaeoP97_01489	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
PhaeoP97_01490	COG2814	Major facilitator Superfamily
PhaeoP97_01498	COG4166	transmembrane transport
PhaeoP97_01499	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_01502	COG2313	pseudouridylate synthase activity
PhaeoP97_01508	COG1612	heme a metabolic process
PhaeoP97_01512	COG5425	PFAM Usg family protein
PhaeoP97_01513	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
PhaeoP97_01521	COG1804	L-carnitine dehydratase bile acid-inducible protein F
PhaeoP97_01522	COG0516	GMP reductase activity
PhaeoP97_01522	COG0517	IMP dehydrogenase activity
PhaeoP97_01529	COG1176	ABC-type spermidine putrescine transport system, permease component I
PhaeoP97_01530	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
PhaeoP97_01532	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PhaeoP97_01532	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PhaeoP97_01535	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
PhaeoP97_01536	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
PhaeoP97_01540	COG2076	Multidrug Resistance protein
PhaeoP97_01543	COG2945	thiolester hydrolase activity
PhaeoP97_01544	COG1959	2 iron, 2 sulfur cluster binding
PhaeoP97_01546	COG0719	Fe-S assembly protein
PhaeoP97_01548	COG0393	Putative heavy-metal-binding
PhaeoP97_01549	COG0396	ATPase activity
PhaeoP97_01550	COG0719	Fe-S assembly protein
PhaeoP97_01553	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PhaeoP97_01557	COG3743	rRNA binding
PhaeoP97_01557	COG0261	This protein binds to 23S rRNA in the presence of protein L20
PhaeoP97_01558	COG0211	Belongs to the bacterial ribosomal protein bL27 family
PhaeoP97_01560	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
PhaeoP97_01561	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
PhaeoP97_01562	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
PhaeoP97_01567	COG0052	Belongs to the universal ribosomal protein uS2 family
PhaeoP97_01568	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
PhaeoP97_01570	COG2197	response regulator
PhaeoP97_01571	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
PhaeoP97_01576	COG1024	Enoyl-CoA hydratase
PhaeoP97_01578	COG1946	Acyl-CoA thioesterase
PhaeoP97_01579	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_01580	COG2801	Transposase and inactivated derivatives
PhaeoP97_01581	COG2801	Transposase and inactivated derivatives
PhaeoP97_01583	COG1960	acyl-CoA dehydrogenase activity
PhaeoP97_01584	COG0583	DNA-binding transcription factor activity
PhaeoP97_01585	COG0745	RESPONSE REGULATOR receiver
PhaeoP97_01586	COG0704	Plays a role in the regulation of phosphate uptake
PhaeoP97_01587	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
PhaeoP97_01589	COG0573	inorganic phosphate transmembrane transporter activity
PhaeoP97_01591	COG5002	protein histidine kinase activity
PhaeoP97_01592	COG0626	cystathionine gamma-synthase activity
PhaeoP97_01594	COG0194	GDP metabolic process
PhaeoP97_01595	COG1561	YicC-like family, N-terminal region
PhaeoP97_01597	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
PhaeoP97_01599	COG2133	pyrroloquinoline quinone binding
PhaeoP97_01605	COG0433	COG0433 Predicted ATPase
PhaeoP97_01608	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PhaeoP97_01609	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PhaeoP97_01610	COG2989	Protein conserved in bacteria
PhaeoP97_01611	COG3108	Peptidase M15
PhaeoP97_01614	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
PhaeoP97_01616	COG0248	Ppx GppA phosphatase
PhaeoP97_01617	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
PhaeoP97_01622	COG1136	(ABC) transporter
PhaeoP97_01625	COG0589	response to stress
PhaeoP97_01628	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
PhaeoP97_01635	COG0747	negative chemotaxis
PhaeoP97_01636	COG0601	transmembrane transport
PhaeoP97_01637	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PhaeoP97_01638	COG0444	Belongs to the ABC transporter superfamily
PhaeoP97_01639	COG4608	Belongs to the ABC transporter superfamily
PhaeoP97_01640	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
PhaeoP97_01642	COG1238	metal cluster binding
PhaeoP97_01652	COG2814	Major facilitator Superfamily
PhaeoP97_01654	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PhaeoP97_01655	COG0215	cysteine-tRNA ligase activity
PhaeoP97_01661	COG0411	ABC transporter
PhaeoP97_01663	COG0559	Belongs to the binding-protein-dependent transport system permease family
PhaeoP97_01669	COG1522	sequence-specific DNA binding
PhaeoP97_01675	COG3842	ATPase activity
PhaeoP97_01676	COG0395	ABC-type sugar transport system, permease component
PhaeoP97_01679	COG0626	cystathionine gamma-synthase activity
PhaeoP97_01681	COG0738	Major facilitator superfamily
PhaeoP97_01683	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PhaeoP97_01686	COG1278	Cold shock
PhaeoP97_01687	COG0259	pyridoxamine-phosphate oxidase activity
PhaeoP97_01688	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
PhaeoP97_01690	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
PhaeoP97_01692	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PhaeoP97_01693	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
PhaeoP97_01696	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
PhaeoP97_01697	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
PhaeoP97_01698	COG0134	indole-3-glycerol-phosphate synthase activity
PhaeoP97_01699	COG0315	cyclic pyranopterin monophosphate synthase activity
PhaeoP97_01700	COG0303	'Molybdopterin
PhaeoP97_01701	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
PhaeoP97_01703	COG0658	competence protein
PhaeoP97_01703	COG2333	competence protein COMEC
PhaeoP97_01704	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PhaeoP97_01705	COG0372	Belongs to the citrate synthase family
PhaeoP97_01707	COG1024	Enoyl-CoA hydratase
PhaeoP97_01708	COG3088	subunit of a heme lyase
PhaeoP97_01709	COG1138	Cytochrome C-type biogenesis protein
PhaeoP97_01712	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
PhaeoP97_01713	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
PhaeoP97_01714	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
PhaeoP97_01717	COG0583	DNA-binding transcription factor activity
PhaeoP97_01719	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PhaeoP97_01720	COG1357	PFAM Pentapeptide repeats (8 copies)
PhaeoP97_01722	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
PhaeoP97_01725	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
PhaeoP97_01727	COG2354	Protein conserved in bacteria
PhaeoP97_01730	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
PhaeoP97_01731	COG2239	Acts as a magnesium transporter
PhaeoP97_01734	COG3239	Fatty acid desaturase
PhaeoP97_01739	COG0587	DNA-directed DNA polymerase activity
PhaeoP97_01740	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PhaeoP97_01758	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
PhaeoP97_01760	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PhaeoP97_01763	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
PhaeoP97_01765	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
PhaeoP97_01766	COG2833	Protein of unknown function (DUF455)
PhaeoP97_01767	COG0739	heme binding
PhaeoP97_01772	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PhaeoP97_01773	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PhaeoP97_01774	COG0126	phosphoglycerate kinase activity
PhaeoP97_01775	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
PhaeoP97_01776	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
PhaeoP97_01777	COG0508	dehydrogenase complex catalyzes the overall conversion of
PhaeoP97_01777	COG0022	dehydrogenase e1 component
PhaeoP97_01778	COG0508	dehydrogenase complex catalyzes the overall conversion of
PhaeoP97_01797	COG4695	Portal protein
PhaeoP97_01800	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
PhaeoP97_01801	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PhaeoP97_01803	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
PhaeoP97_01804	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PhaeoP97_01806	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
PhaeoP97_01810	COG0069	glutamate synthase activity
PhaeoP97_01814	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
PhaeoP97_01815	COG0840	transmembrane signaling receptor activity
PhaeoP97_01820	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
PhaeoP97_01823	COG3243	poly(R)-hydroxyalkanoic acid synthase
PhaeoP97_01830	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
PhaeoP97_01832	COG3220	belongs to the UPF0276 family
PhaeoP97_01836	COG1393	Belongs to the ArsC family
PhaeoP97_01837	COG1278	Cold shock
PhaeoP97_01838	COG1012	belongs to the aldehyde dehydrogenase family
PhaeoP97_01839	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PhaeoP97_01841	COG2267	carboxylic ester hydrolase activity
PhaeoP97_01843	COG1802	Transcriptional regulator
PhaeoP97_01846	COG1522	sequence-specific DNA binding
PhaeoP97_01847	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PhaeoP97_01848	COG0765	amino acid transport
PhaeoP97_01849	COG0765	amino acid transport
PhaeoP97_01850	COG1126	abc transporter atp-binding protein
PhaeoP97_01852	COG2353	YceI-like domain
PhaeoP97_01856	COG0360	Binds together with S18 to 16S ribosomal RNA
PhaeoP97_01857	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
PhaeoP97_01858	COG0359	binds to the 23S rRNA
PhaeoP97_01861	COG0737	Belongs to the 5'-nucleotidase family
PhaeoP97_01863	COG0544	peptidyl-prolyl cis-trans isomerase activity
PhaeoP97_01865	COG0840	transmembrane signaling receptor activity
PhaeoP97_01906	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
PhaeoP97_01911	COG0006	proline dipeptidase activity
PhaeoP97_01915	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
PhaeoP97_01922	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PhaeoP97_01924	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PhaeoP97_01925	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
PhaeoP97_01926	COG4133	protoheme IX ABC transporter activity
PhaeoP97_01927	COG3737	Protein of unknown function (DUF498/DUF598)
PhaeoP97_01928	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
PhaeoP97_01929	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
PhaeoP97_01932	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
PhaeoP97_01934	COG3239	Fatty acid desaturase
PhaeoP97_01935	COG1160	GTP binding
PhaeoP97_01936	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PhaeoP97_01939	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
PhaeoP97_01941	COG5265	(ABC) transporter
PhaeoP97_01950	COG0404	The glycine cleavage system catalyzes the degradation of glycine
PhaeoP97_01950	COG0446	pyridine nucleotide-disulphide oxidoreductase
PhaeoP97_01952	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PhaeoP97_01953	COG4235	cytochrome complex assembly
PhaeoP97_01954	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
PhaeoP97_01958	COG0730	response to heat
PhaeoP97_01959	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
PhaeoP97_01961	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PhaeoP97_01964	COG0784	Response regulator, receiver
PhaeoP97_01964	COG2205	protein histidine kinase activity
PhaeoP97_01966	COG2197	response regulator
PhaeoP97_01968	COG1294	oxidase, subunit
PhaeoP97_01969	COG1271	oxidase subunit
PhaeoP97_01974	COG0105	UTP biosynthetic process
PhaeoP97_01975	COG0488	(ABC) transporter
PhaeoP97_01976	COG2095	MarC family integral membrane protein
PhaeoP97_01979	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
PhaeoP97_01983	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PhaeoP97_01984	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
PhaeoP97_01985	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
PhaeoP97_01987	COG2890	protein-(glutamine-N5) methyltransferase activity
PhaeoP97_01988	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
PhaeoP97_01992	COG0010	Belongs to the arginase family
PhaeoP97_01993	COG1473	amidohydrolase
PhaeoP97_01994	COG3956	TIGRFAM MazG family protein
PhaeoP97_01996	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PhaeoP97_01998	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
PhaeoP97_02000	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
PhaeoP97_02015	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
PhaeoP97_02016	COG0346	lactoylglutathione lyase activity
PhaeoP97_02017	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
PhaeoP97_02022	COG0028	Belongs to the TPP enzyme family
PhaeoP97_02023	COG0440	acetolactate synthase activity
PhaeoP97_02027	COG0154	amidase activity
PhaeoP97_02028	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
PhaeoP97_02029	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
PhaeoP97_02030	COG0860	N-Acetylmuramoyl-L-alanine amidase
PhaeoP97_02034	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
PhaeoP97_02036	COG0156	8-amino-7-oxononanoate synthase activity
PhaeoP97_02042	COG0406	alpha-ribazole phosphatase activity
PhaeoP97_02044	COG1522	sequence-specific DNA binding
PhaeoP97_02049	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
PhaeoP97_02053	COG0343	queuine tRNA-ribosyltransferase activity
PhaeoP97_02056	COG4681	YaeQ
PhaeoP97_02057	COG2151	metal-sulfur cluster biosynthetic enzyme
PhaeoP97_02059	COG0316	Belongs to the HesB IscA family
PhaeoP97_02061	COG0149	triose-phosphate isomerase activity
PhaeoP97_02062	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
PhaeoP97_02063	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
PhaeoP97_02064	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
PhaeoP97_02065	COG2204	response regulator
PhaeoP97_02067	COG2124	cytochrome p450
PhaeoP97_02069	COG1522	sequence-specific DNA binding
PhaeoP97_02070	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
PhaeoP97_02070	COG1648	precorrin-2 dehydrogenase activity
PhaeoP97_02072	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
PhaeoP97_02073	COG0175	sulfate reduction
PhaeoP97_02077	COG0446	pyridine nucleotide-disulphide oxidoreductase
PhaeoP97_02077	COG1902	pentaerythritol trinitrate reductase activity
PhaeoP97_02083	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
PhaeoP97_02086	COG0346	lactoylglutathione lyase activity
PhaeoP97_02087	COG1846	Transcriptional regulator
PhaeoP97_02095	COG0534	Mate efflux family protein
PhaeoP97_02099	COG0187	DNA topoisomerase II activity
PhaeoP97_02103	COG0243	molybdopterin cofactor binding
PhaeoP97_02105	COG1136	(ABC) transporter
PhaeoP97_02107	COG0442	prolyl-tRNA aminoacylation
PhaeoP97_02108	COG0628	permease
PhaeoP97_02110	COG0248	Ppx GppA phosphatase
PhaeoP97_02113	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
PhaeoP97_02120	COG0439	Biotin carboxylase
PhaeoP97_02126	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
PhaeoP97_02127	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
PhaeoP97_02129	COG1396	sequence-specific DNA binding
PhaeoP97_02129	COG3800	Transcriptional regulator
PhaeoP97_02134	COG1012	belongs to the aldehyde dehydrogenase family
PhaeoP97_02135	COG3119	arylsulfatase activity
PhaeoP97_02137	COG1309	transcriptional regulator
PhaeoP97_02139	COG0697	spore germination
PhaeoP97_02144	COG0217	transcriptional regulatory protein
PhaeoP97_02145	COG3273	potassium ion transport
PhaeoP97_02145	COG0471	metal ion transport
PhaeoP97_02147	COG3273	potassium ion transport
PhaeoP97_02147	COG0471	metal ion transport
PhaeoP97_02148	COG1692	metallophosphoesterase
PhaeoP97_02149	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
PhaeoP97_02150	COG2239	Acts as a magnesium transporter
PhaeoP97_02151	COG0402	S-adenosylhomocysteine deaminase activity
PhaeoP97_02153	COG0483	inositol monophosphate 1-phosphatase activity
PhaeoP97_02154	COG1396	sequence-specific DNA binding
PhaeoP97_02155	COG0604	alcohol dehydrogenase
PhaeoP97_02155	COG3321	synthase
PhaeoP97_02155	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_02156	COG0583	DNA-binding transcription factor activity
PhaeoP97_02159	COG0435	Glutathione S-transferase
PhaeoP97_02160	COG0670	Belongs to the BI1 family
PhaeoP97_02162	COG0267	Belongs to the bacterial ribosomal protein bL33 family
PhaeoP97_02166	COG0154	amidase activity
PhaeoP97_02167	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PhaeoP97_02168	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
PhaeoP97_02169	COG2818	Glycosylase
PhaeoP97_02170	COG0590	tRNA wobble adenosine to inosine editing
PhaeoP97_02171	COG1187	pseudouridine synthase activity
PhaeoP97_02173	COG3853	Toxic anion resistance protein (TelA)
PhaeoP97_02179	COG1490	D-aminoacyl-tRNA deacylase activity
PhaeoP97_02181	COG0601	transmembrane transport
PhaeoP97_02182	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PhaeoP97_02187	COG0318	PFAM AMP-dependent synthetase and ligase
PhaeoP97_02188	COG1132	(ABC) transporter
PhaeoP97_02189	COG2801	Transposase and inactivated derivatives
PhaeoP97_02197	COG1414	Transcriptional regulator
PhaeoP97_02203	COG2198	Histidine kinase
PhaeoP97_02203	COG0784	Response regulator, receiver
PhaeoP97_02203	COG2205	protein histidine kinase activity
PhaeoP97_02214	COG1960	acyl-CoA dehydrogenase activity
PhaeoP97_02215	COG1024	Enoyl-CoA hydratase
PhaeoP97_02217	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_02219	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PhaeoP97_02220	COG0527	aspartate kinase activity
PhaeoP97_02221	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
PhaeoP97_02223	COG1469	GTP cyclohydrolase I activity
PhaeoP97_02226	COG2917	probably involved in intracellular septation
PhaeoP97_02230	COG0552	protein localization to endoplasmic reticulum
PhaeoP97_02233	COG1570	exodeoxyribonuclease VII activity
PhaeoP97_02234	COG0151	Belongs to the GarS family
PhaeoP97_02235	COG3781	membrane
PhaeoP97_02241	COG0330	HflC and HflK could
PhaeoP97_02245	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
PhaeoP97_02246	COG0625	glutathione transferase activity
PhaeoP97_02247	COG1760	l-serine dehydratase
PhaeoP97_02253	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
PhaeoP97_02258	COG0504	CTP synthase activity
PhaeoP97_02259	COG3588	fructose-bisphosphate aldolase
PhaeoP97_02260	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PhaeoP97_02264	COG1024	Enoyl-CoA hydratase
PhaeoP97_02265	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
PhaeoP97_02266	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
PhaeoP97_02267	COG1132	(ABC) transporter
PhaeoP97_02268	COG0404	The glycine cleavage system catalyzes the degradation of glycine
PhaeoP97_02270	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PhaeoP97_02272	COG1492	cobalamin metabolic process
PhaeoP97_02275	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
PhaeoP97_02277	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
PhaeoP97_02278	COG5510	response to toxic substance
PhaeoP97_02280	COG0481	GTPase activity
PhaeoP97_02284	COG0583	DNA-binding transcription factor activity
PhaeoP97_02285	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PhaeoP97_02288	COG0227	Belongs to the bacterial ribosomal protein bL28 family
PhaeoP97_02289	COG1703	isobutyryl-CoA mutase activity
PhaeoP97_02290	COG1643	Atp-dependent helicase
PhaeoP97_02292	COG0306	phosphate transporter
PhaeoP97_02293	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
PhaeoP97_02294	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
PhaeoP97_02296	COG0842	Transport permease protein
PhaeoP97_02299	COG0625	glutathione transferase activity
PhaeoP97_02304	COG2877	3-deoxy-8-phosphooctulonate synthase activity
PhaeoP97_02307	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
PhaeoP97_02315	COG1872	DUF167
PhaeoP97_02316	COG0778	Nitroreductase
PhaeoP97_02324	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
PhaeoP97_02326	COG0512	Glutamine amidotransferase of anthranilate synthase
PhaeoP97_02326	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
PhaeoP97_02327	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
PhaeoP97_02328	COG0583	DNA-binding transcription factor activity
PhaeoP97_02329	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
PhaeoP97_02330	COG3591	Belongs to the peptidase S1B family
PhaeoP97_02333	COG1846	Transcriptional regulator
PhaeoP97_02335	COG0431	NADPH-dependent FMN reductase
PhaeoP97_02338	COG1435	thymidine kinase activity
PhaeoP97_02340	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PhaeoP97_02344	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
PhaeoP97_02349	COG1522	sequence-specific DNA binding
PhaeoP97_02350	COG0492	ferredoxin-NADP+ reductase activity
PhaeoP97_02351	COG2046	Belongs to the sulfate adenylyltransferase family
PhaeoP97_02351	COG0529	Catalyzes the synthesis of activated sulfate
PhaeoP97_02353	COG0384	phenazine biosynthesis protein PhzF
PhaeoP97_02355	COG0071	Belongs to the small heat shock protein (HSP20) family
PhaeoP97_02357	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
PhaeoP97_02358	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
PhaeoP97_02359	COG3454	Phosphonate metabolism
PhaeoP97_02362	COG0459	protein refolding
PhaeoP97_02363	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
PhaeoP97_02365	COG1227	inorganic diphosphatase activity
PhaeoP97_02366	COG0840	transmembrane signaling receptor activity
PhaeoP97_02368	COG2030	dehydratase
PhaeoP97_02369	COG0196	riboflavin kinase activity
PhaeoP97_02370	COG2983	Belongs to the UPF0260 family
PhaeoP97_02374	COG0596	Alpha beta hydrolase
PhaeoP97_02378	COG0355	proton-transporting ATP synthase activity, rotational mechanism
PhaeoP97_02379	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
PhaeoP97_02380	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
PhaeoP97_02381	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
PhaeoP97_02382	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PhaeoP97_02384	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PhaeoP97_02390	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
PhaeoP97_02393	COG0287	Prephenate dehydrogenase
PhaeoP97_02394	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
PhaeoP97_02395	COG1522	sequence-specific DNA binding
PhaeoP97_02397	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
PhaeoP97_02416	COG3383	formate dehydrogenase (NAD+) activity
PhaeoP97_02417	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
PhaeoP97_02418	COG0583	DNA-binding transcription factor activity
PhaeoP97_02421	COG0840	transmembrane signaling receptor activity
PhaeoP97_02427	COG2873	o-acetylhomoserine
PhaeoP97_02433	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
PhaeoP97_02433	COG0475	glutathione-regulated potassium exporter activity
PhaeoP97_02434	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
PhaeoP97_02435	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
PhaeoP97_02437	COG1329	Transcriptional regulator
PhaeoP97_02439	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
PhaeoP97_02445	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
PhaeoP97_02449	COG1414	Transcriptional regulator
PhaeoP97_02452	COG0395	ABC-type sugar transport system, permease component
PhaeoP97_02454	COG0129	dihydroxy-acid dehydratase activity
PhaeoP97_02455	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_02457	COG0800	Aldolase
PhaeoP97_02461	COG4214	carbohydrate transport
PhaeoP97_02464	COG0673	inositol 2-dehydrogenase activity
PhaeoP97_02466	COG0673	inositol 2-dehydrogenase activity
PhaeoP97_02467	COG3962	Belongs to the TPP enzyme family
PhaeoP97_02468	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PhaeoP97_02471	COG0673	inositol 2-dehydrogenase activity
PhaeoP97_02476	COG3391	amine dehydrogenase activity
PhaeoP97_02478	COG1858	cytochrome C peroxidase
PhaeoP97_02480	COG1522	sequence-specific DNA binding
PhaeoP97_02482	COG1115	amino acid carrier protein
PhaeoP97_02485	COG1970	mechanosensitive ion channel activity
PhaeoP97_02486	COG0668	transmembrane transport
PhaeoP97_02487	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PhaeoP97_02491	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PhaeoP97_02491	COG0072	phenylalanine-tRNA ligase activity
PhaeoP97_02494	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
PhaeoP97_02495	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
PhaeoP97_02496	COG0291	Belongs to the bacterial ribosomal protein bL35 family
PhaeoP97_02498	COG0469	pyruvate kinase activity
PhaeoP97_02518	COG1686	Belongs to the peptidase S11 family
PhaeoP97_02519	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
PhaeoP97_02521	COG0084	hydrolase, TatD family'
PhaeoP97_02522	COG1234	tRNA 3'-trailer cleavage
PhaeoP97_02528	COG0642	Histidine kinase
PhaeoP97_02530	COG3842	ATPase activity
PhaeoP97_02531	COG0366	Alpha amylase catalytic
PhaeoP97_02532	COG0395	ABC-type sugar transport system, permease component
PhaeoP97_02533	COG1175	transmembrane transport
PhaeoP97_02534	COG1653	transport
PhaeoP97_02535	COG1609	Transcriptional regulator
PhaeoP97_02536	COG2723	6-phospho-beta-galactosidase activity
PhaeoP97_02538	COG0006	proline dipeptidase activity
PhaeoP97_02539	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
PhaeoP97_02542	COG2801	Transposase and inactivated derivatives
PhaeoP97_02548	COG0454	-acetyltransferase
PhaeoP97_02549	COG2264	protein methyltransferase activity
PhaeoP97_02552	COG0556	nucleotide-excision repair
PhaeoP97_02561	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
PhaeoP97_02563	COG1846	Transcriptional regulator
PhaeoP97_02563	COG1940	carbohydrate kinase activity
PhaeoP97_02566	COG1172	Belongs to the binding-protein-dependent transport system permease family
PhaeoP97_02571	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
PhaeoP97_02579	COG1376	ErfK ybiS ycfS ynhG family protein
PhaeoP97_02580	COG1278	Cold shock
PhaeoP97_02582	COG4181	ATPase activity
PhaeoP97_02584	COG1959	2 iron, 2 sulfur cluster binding
PhaeoP97_02586	COG4325	translation initiation factor activity
PhaeoP97_02587	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PhaeoP97_02588	COG3706	GGDEF domain
PhaeoP97_02591	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PhaeoP97_02592	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
PhaeoP97_02596	COG0768	penicillin binding
PhaeoP97_02597	COG0772	Belongs to the SEDS family
PhaeoP97_02600	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PhaeoP97_02602	COG0339	signal peptide processing
PhaeoP97_02603	COG0765	amino acid transport
PhaeoP97_02604	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PhaeoP97_02605	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
PhaeoP97_02606	COG0756	dUTP diphosphatase activity
PhaeoP97_02609	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
PhaeoP97_02611	COG0406	alpha-ribazole phosphatase activity
PhaeoP97_02611	COG0328	RNA-DNA hybrid ribonuclease activity
PhaeoP97_02613	COG0606	chelatase, subunit chli
PhaeoP97_02616	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
PhaeoP97_02618	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
PhaeoP97_02621	COG0180	Tryptophanyl-tRNA synthetase
PhaeoP97_02622	COG1278	Cold shock
PhaeoP97_02623	COG1309	transcriptional regulator
PhaeoP97_02625	COG2050	protein possibly involved in aromatic compounds catabolism
PhaeoP97_02626	COG1024	Enoyl-CoA hydratase
PhaeoP97_02627	COG2030	dehydratase
PhaeoP97_02627	COG1012	belongs to the aldehyde dehydrogenase family
PhaeoP97_02628	COG3327	negative regulation of DNA-templated transcription, initiation
PhaeoP97_02631	COG1120	ATPase activity
PhaeoP97_02633	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PhaeoP97_02634	COG0251	oxidation-reduction process
PhaeoP97_02639	COG0402	S-adenosylhomocysteine deaminase activity
PhaeoP97_02645	COG3237	CsbD-like
PhaeoP97_02650	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PhaeoP97_02653	COG0784	Response regulator, receiver
PhaeoP97_02664	COG0174	glutamine synthetase
PhaeoP97_02668	COG2175	clavaminate synthase activity
PhaeoP97_02669	COG0583	DNA-binding transcription factor activity
PhaeoP97_02673	COG4251	negative regulation of phosphorylation
PhaeoP97_02674	COG2197	response regulator
PhaeoP97_02677	COG0321	lipoyl(octanoyl) transferase activity
PhaeoP97_02679	COG0537	adenosine 5'-monophosphoramidase activity
PhaeoP97_02684	COG1610	YqeY-like protein
PhaeoP97_02685	COG0505	Belongs to the CarA family
PhaeoP97_02687	COG1802	Transcriptional regulator
PhaeoP97_02690	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PhaeoP97_02693	COG1522	sequence-specific DNA binding
PhaeoP97_02695	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
PhaeoP97_02697	COG0697	spore germination
PhaeoP97_02698	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PhaeoP97_02699	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
PhaeoP97_02700	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
PhaeoP97_02701	COG3773	Cell wall hydrolase
PhaeoP97_02701	COG3409	Peptidoglycan-binding domain 1 protein
PhaeoP97_02702	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PhaeoP97_02702	COG0574	Belongs to the PEP-utilizing enzyme family
PhaeoP97_02703	COG0751	glycine-tRNA ligase activity
PhaeoP97_02704	COG0786	glutamate:sodium symporter activity
PhaeoP97_02706	COG0752	glycyl-tRNA synthetase alpha subunit
PhaeoP97_02712	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
PhaeoP97_02714	COG0659	secondary active sulfate transmembrane transporter activity
PhaeoP97_02716	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
PhaeoP97_02718	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PhaeoP97_02719	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
PhaeoP97_02720	COG2271	Major facilitator Superfamily
PhaeoP97_02723	COG0612	Peptidase, M16
PhaeoP97_02727	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
PhaeoP97_02729	COG0109	protoheme IX farnesyltransferase activity
PhaeoP97_02731	COG0312	modulator of DNA gyrase
PhaeoP97_02732	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PhaeoP97_02732	COG0758	DNA mediated transformation
PhaeoP97_02733	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
PhaeoP97_02737	COG0741	lytic transglycosylase activity
PhaeoP97_02741	COG4964	Belongs to the GSP D family
PhaeoP97_02742	COG2885	chlorophyll binding
PhaeoP97_02751	COG1201	RNA secondary structure unwinding
PhaeoP97_02754	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
PhaeoP97_02755	COG1605	Chorismate mutase
PhaeoP97_02755	COG0287	Prephenate dehydrogenase
PhaeoP97_02756	COG2759	Belongs to the formate--tetrahydrofolate ligase family
PhaeoP97_02758	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
PhaeoP97_02759	COG0037	tRNA processing
PhaeoP97_02761	COG2885	chlorophyll binding
PhaeoP97_02762	COG0823	Involved in the tonB-independent uptake of proteins
PhaeoP97_02766	COG0824	Thioesterase
PhaeoP97_02768	COG2255	four-way junction helicase activity
PhaeoP97_02770	COG0632	four-way junction helicase activity
PhaeoP97_02771	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
PhaeoP97_02774	COG2264	protein methyltransferase activity
PhaeoP97_02776	COG2391	methyltransferase activity
PhaeoP97_02778	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
PhaeoP97_02780	COG4974	Belongs to the 'phage' integrase family
PhaeoP97_02782	COG1183	phosphatidylcholine synthase activity
PhaeoP97_02783	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
PhaeoP97_02785	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
PhaeoP97_02787	COG3768	UPF0283 membrane protein
PhaeoP97_02789	COG3106	COG3106 Predicted ATPase
PhaeoP97_02790	COG0101	tRNA pseudouridine synthase activity
PhaeoP97_02792	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
PhaeoP97_02793	COG0602	queuosine metabolic process
PhaeoP97_02794	COG0720	synthase
PhaeoP97_02795	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
PhaeoP97_02797	COG0509	glycine decarboxylation via glycine cleavage system
PhaeoP97_02800	COG3257	ureidoglycine aminohydrolase activity
PhaeoP97_02804	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
PhaeoP97_02806	COG2351	hydroxyisourate hydrolase activity
PhaeoP97_02814	COG0837	glucose binding
PhaeoP97_02817	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
PhaeoP97_02826	COG0297	glycogen (starch) synthase activity
PhaeoP97_02826	COG0438	transferase activity, transferring glycosyl groups
PhaeoP97_02832	COG0116	Belongs to the methyltransferase superfamily
PhaeoP97_02832	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
PhaeoP97_02834	COG3842	ATPase activity
PhaeoP97_02835	COG3842	ATPase activity
PhaeoP97_02836	COG1175	transmembrane transport
PhaeoP97_02837	COG0395	ABC-type sugar transport system, permease component
PhaeoP97_02842	COG0840	transmembrane signaling receptor activity
PhaeoP97_02843	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PhaeoP97_02844	COG1012	belongs to the aldehyde dehydrogenase family
PhaeoP97_02845	COG3938	Belongs to the proline racemase family
PhaeoP97_02850	COG2189	Belongs to the N(4) N(6)-methyltransferase family
PhaeoP97_02858	COG0012	GTP binding
PhaeoP97_02860	COG0159	tryptophan synthase activity
PhaeoP97_02862	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
PhaeoP97_02863	COG0193	aminoacyl-tRNA hydrolase activity
PhaeoP97_02866	COG0133	tryptophan synthase activity
PhaeoP97_02867	COG0135	phosphoribosylanthranilate isomerase activity
PhaeoP97_02869	COG0776	regulation of translation
PhaeoP97_02870	COG0539	negative regulation of cytoplasmic translation
PhaeoP97_02872	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
PhaeoP97_02873	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
PhaeoP97_02874	COG0220	tRNA (guanine-N7-)-methyltransferase activity
PhaeoP97_02876	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
PhaeoP97_02878	COG0815	Transfers the fatty acyl group on membrane lipoproteins
PhaeoP97_02879	COG1253	flavin adenine dinucleotide binding
PhaeoP97_02880	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
PhaeoP97_02881	COG1702	phosphate starvation-inducible protein PhoH
PhaeoP97_02884	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
PhaeoP97_02887	COG0583	DNA-binding transcription factor activity
PhaeoP97_02889	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
PhaeoP97_02890	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PhaeoP97_02891	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
PhaeoP97_02892	COG2070	2-Nitropropane dioxygenase
PhaeoP97_02893	COG1047	Peptidyl-prolyl cis-trans
PhaeoP97_02898	COG0596	Alpha beta hydrolase
PhaeoP97_02902	COG4948	Mandelate Racemase Muconate Lactonizing
PhaeoP97_02903	COG1132	(ABC) transporter
PhaeoP97_02905	COG1522	sequence-specific DNA binding
PhaeoP97_02912	COG0601	transmembrane transport
PhaeoP97_02913	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PhaeoP97_02914	COG1804	L-carnitine dehydratase bile acid-inducible protein F
PhaeoP97_02915	COG0668	transmembrane transport
PhaeoP97_02918	COG0438	transferase activity, transferring glycosyl groups
PhaeoP97_02919	COG0588	phosphoglycerate mutase activity
PhaeoP97_02923	COG3454	Phosphonate metabolism
PhaeoP97_02926	COG4778	phosphonate C-P lyase system protein PhnL
PhaeoP97_02927	COG4107	phosphonate C-P lyase system protein PhnK
PhaeoP97_02928	COG3627	carbon phosphorus lyase activity
PhaeoP97_02930	COG3626	phosphonate metabolism
PhaeoP97_02931	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
PhaeoP97_02932	COG3624	Phosphonate C-P lyase system protein PhnG
PhaeoP97_02933	COG2188	Transcriptional regulator
PhaeoP97_02935	COG3639	organic phosphonate transmembrane transporter activity
PhaeoP97_02936	COG3639	organic phosphonate transmembrane transporter activity
PhaeoP97_02937	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
PhaeoP97_02940	COG0318	PFAM AMP-dependent synthetase and ligase
PhaeoP97_02942	COG1960	acyl-CoA dehydrogenase activity
PhaeoP97_02943	COG1960	acyl-CoA dehydrogenase activity
PhaeoP97_02944	COG0183	Belongs to the thiolase family
PhaeoP97_02945	COG1024	Enoyl-CoA hydratase
PhaeoP97_02945	COG1250	3-hydroxyacyl-CoA dehydrogenase
PhaeoP97_02948	COG3396	Phenylacetate-CoA oxygenase
PhaeoP97_02949	COG3460	Phenylacetate-CoA oxygenase
PhaeoP97_02950	COG3396	Phenylacetate-CoA oxygenase
PhaeoP97_02951	COG2151	metal-sulfur cluster biosynthetic enzyme
PhaeoP97_02952	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
PhaeoP97_02956	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
PhaeoP97_02957	COG1214	PFAM Peptidase M22, glycoprotease
PhaeoP97_02963	COG0730	response to heat
PhaeoP97_02965	COG4221	oxidoreductase activity
PhaeoP97_02970	COG2937	Belongs to the GPAT DAPAT family
PhaeoP97_02973	COG0813	purine-nucleoside phosphorylase activity
PhaeoP97_02975	COG0019	diaminopimelate decarboxylase activity
PhaeoP97_02985	COG2030	dehydratase
PhaeoP97_02988	COG2301	Belongs to the HpcH HpaI aldolase family
PhaeoP97_02991	COG0039	L-malate dehydrogenase activity
PhaeoP97_02993	COG0045	succinate-CoA ligase (ADP-forming) activity
PhaeoP97_02996	COG0567	Dehydrogenase, E1 component
PhaeoP97_02997	COG0508	dehydrogenase complex catalyzes the overall conversion of
PhaeoP97_03006	COG2884	Cell division ATP-binding protein ftsE
PhaeoP97_03009	COG0019	diaminopimelate decarboxylase activity
PhaeoP97_03011	COG0165	Argininosuccinate lyase
PhaeoP97_03012	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PhaeoP97_03017	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_03019	COG0583	DNA-binding transcription factor activity
PhaeoP97_03020	COG0697	spore germination
PhaeoP97_03022	COG2890	protein-(glutamine-N5) methyltransferase activity
PhaeoP97_03024	COG0142	geranyltranstransferase activity
PhaeoP97_03025	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
PhaeoP97_03028	COG0789	Transcriptional regulator
PhaeoP97_03031	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
PhaeoP97_03033	COG0303	'Molybdopterin
PhaeoP97_03035	COG1763	Mo-molybdopterin cofactor biosynthetic process
PhaeoP97_03036	COG0746	molybdenum cofactor guanylyltransferase activity
PhaeoP97_03037	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
PhaeoP97_03045	COG1960	acyl-CoA dehydrogenase activity
PhaeoP97_03046	COG0009	L-threonylcarbamoyladenylate synthase
PhaeoP97_03047	COG1678	Uncharacterized ACR, COG1678
PhaeoP97_03052	COG0521	Mo-molybdopterin cofactor biosynthetic process
PhaeoP97_03053	COG1573	uracil-dna glycosylase
PhaeoP97_03054	COG0540	Belongs to the ATCase OTCase family
PhaeoP97_03058	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
PhaeoP97_03064	COG1385	rRNA (uridine-N3-)-methyltransferase activity
PhaeoP97_03066	COG2885	chlorophyll binding
PhaeoP97_03068	COG0314	molybdopterin synthase activity
PhaeoP97_03070	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
PhaeoP97_03071	COG0322	excinuclease ABC activity
PhaeoP97_03072	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_03075	COG0842	Transport permease protein
PhaeoP97_03076	COG1131	(ABC) transporter
PhaeoP97_03080	COG0793	Belongs to the peptidase S41A family
PhaeoP97_03082	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
PhaeoP97_03083	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
PhaeoP97_03083	COG2169	Transcriptional regulator
PhaeoP97_03085	COG3842	ATPase activity
PhaeoP97_03086	COG0395	ABC-type sugar transport system, permease component
PhaeoP97_03087	COG1175	transmembrane transport
PhaeoP97_03088	COG1653	transport
PhaeoP97_03089	COG1609	Transcriptional regulator
PhaeoP97_03105	COG0582	viral genome integration into host DNA
PhaeoP97_03107	COG1530	ribonuclease E activity
PhaeoP97_03109	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
PhaeoP97_03110	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
PhaeoP97_03110	COG3153	acetyltransferase
PhaeoP97_03117	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PhaeoP97_03117	COG0456	acetyltransferase
PhaeoP97_03119	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PhaeoP97_03126	COG3550	peptidyl-serine autophosphorylation
PhaeoP97_03127	COG3620	sequence-specific DNA binding
PhaeoP97_03134	COG0653	protein targeting
PhaeoP97_03148	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
PhaeoP97_03152	COG0542	response to heat
PhaeoP97_03153	COG0284	orotidine-5'-phosphate decarboxylase activity
PhaeoP97_03155	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PhaeoP97_03158	COG0257	Belongs to the bacterial ribosomal protein bL36 family
PhaeoP97_03159	COG1840	ABC-type Fe3 transport system, periplasmic component
PhaeoP97_03161	COG0523	cobalamin synthesis protein
PhaeoP97_03162	COG1178	ABC-type Fe3 transport system permease component
PhaeoP97_03163	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
PhaeoP97_03169	COG0559	Belongs to the binding-protein-dependent transport system permease family
PhaeoP97_03170	COG0411	ABC transporter
PhaeoP97_03172	COG4191	Histidine kinase
PhaeoP97_03173	COG0745	RESPONSE REGULATOR receiver
PhaeoP97_03176	COG0625	glutathione transferase activity
PhaeoP97_03182	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
PhaeoP97_03183	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PhaeoP97_03184	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PhaeoP97_03184	COG1321	iron dependent repressor
PhaeoP97_03185	COG1121	(ABC) transporter
PhaeoP97_03186	COG0803	Belongs to the bacterial solute-binding protein 9 family
PhaeoP97_03188	COG1012	belongs to the aldehyde dehydrogenase family
PhaeoP97_03189	COG0612	Peptidase, M16
PhaeoP97_03190	COG0612	Peptidase, M16
PhaeoP97_03192	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
PhaeoP97_03193	COG0138	bifunctional purine biosynthesis protein purh
PhaeoP97_03198	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
PhaeoP97_03199	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
PhaeoP97_03201	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
PhaeoP97_03204	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
PhaeoP97_03205	COG0500	methyltransferase
PhaeoP97_03206	COG1185	polyribonucleotide nucleotidyltransferase activity
PhaeoP97_03208	COG0450	alkyl hydroperoxide reductase
PhaeoP97_03217	COG0564	pseudouridine synthase activity
PhaeoP97_03230	COG2172	sigma factor antagonist activity
PhaeoP97_03231	COG0405	Gamma-glutamyltransferase
PhaeoP97_03233	COG3118	belongs to the thioredoxin family
PhaeoP97_03235	COG2835	tetraacyldisaccharide 4'-kinase activity
PhaeoP97_03236	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PhaeoP97_03237	COG0154	amidase activity
PhaeoP97_03238	COG0436	Aminotransferase
PhaeoP97_03239	COG1674	ftsk spoiiie
PhaeoP97_03242	COG0708	Exodeoxyribonuclease III
PhaeoP97_03243	COG0745	RESPONSE REGULATOR receiver
PhaeoP97_03249	COG0495	leucyl-tRNA aminoacylation
PhaeoP97_03252	COG0625	glutathione transferase activity
PhaeoP97_03253	COG2081	HI0933 family
PhaeoP97_03255	COG1024	Enoyl-CoA hydratase
PhaeoP97_03258	COG0312	modulator of DNA gyrase
PhaeoP97_03261	COG1663	tetraacyldisaccharide 4'-kinase activity
PhaeoP97_03264	COG1194	a g-specific adenine glycosylase
PhaeoP97_03267	COG2189	Belongs to the N(4) N(6)-methyltransferase family
PhaeoP97_03268	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PhaeoP97_03274	COG0022	dehydrogenase e1 component
PhaeoP97_03275	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
PhaeoP97_03279	COG0559	Belongs to the binding-protein-dependent transport system permease family
PhaeoP97_03281	COG0829	nickel cation binding
PhaeoP97_03282	COG0831	urea catabolic process
PhaeoP97_03284	COG0832	Belongs to the urease beta subunit family
PhaeoP97_03285	COG0804	urea catabolic process
PhaeoP97_03286	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
PhaeoP97_03287	COG0830	nickel cation binding
PhaeoP97_03288	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
PhaeoP97_03289	COG0189	ligase activity
PhaeoP97_03289	COG4067	protein conserved in archaea
PhaeoP97_03290	COG0189	ligase activity
PhaeoP97_03294	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
PhaeoP97_03295	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
PhaeoP97_03300	COG0625	glutathione transferase activity
PhaeoP97_03303	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
PhaeoP97_03304	COG1178	ABC-type Fe3 transport system permease component
PhaeoP97_03305	COG4143	(ABC) transporter
PhaeoP97_03307	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
PhaeoP97_03308	COG0318	PFAM AMP-dependent synthetase and ligase
PhaeoP97_03309	COG0697	spore germination
PhaeoP97_03310	COG1846	Transcriptional regulator
PhaeoP97_03311	COG1764	response to oxidative stress
PhaeoP97_03312	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
PhaeoP97_03313	COG1846	Transcriptional regulator
PhaeoP97_03314	COG0745	RESPONSE REGULATOR receiver
PhaeoP97_03315	COG0123	including yeast histone deacetylase and acetoin utilization protein
PhaeoP97_03316	COG1722	exodeoxyribonuclease VII activity
PhaeoP97_03317	COG0142	geranyltranstransferase activity
PhaeoP97_03318	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
PhaeoP97_03323	COG1960	acyl-CoA dehydrogenase activity
PhaeoP97_03325	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
PhaeoP97_03326	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
PhaeoP97_03329	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PhaeoP97_03330	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PhaeoP97_03332	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
PhaeoP97_03334	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
PhaeoP97_03337	COG1968	undecaprenyl-diphosphatase activity
PhaeoP97_03344	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PhaeoP97_03345	COG0517	IMP dehydrogenase activity
PhaeoP97_03345	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
PhaeoP97_03348	COG1137	ATPase activity
PhaeoP97_03349	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
PhaeoP97_03350	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
PhaeoP97_03355	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
PhaeoP97_03359	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
PhaeoP97_03361	COG5443	negative regulation of bacterial-type flagellum assembly
PhaeoP97_03363	COG1157	protein secretion by the type III secretion system
PhaeoP97_03364	COG1815	bacterial-type flagellum-dependent cell motility
PhaeoP97_03365	COG1558	bacterial-type flagellum-dependent cell motility
PhaeoP97_03366	COG1677	Flagellar hook-basal body complex protein FliE
PhaeoP97_03367	COG1987	bacterial-type flagellum assembly
PhaeoP97_03368	COG4786	Flagellar basal body rod
PhaeoP97_03369	COG4786	Flagellar basal body rod
PhaeoP97_03371	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
PhaeoP97_03374	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
PhaeoP97_03376	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
PhaeoP97_03379	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
PhaeoP97_03383	COG1766	The M ring may be actively involved in energy transduction
PhaeoP97_03385	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
PhaeoP97_03386	COG1338	Plays a role in the flagellum-specific transport system
PhaeoP97_03387	COG1706	bacterial-type flagellum-dependent cell motility
PhaeoP97_03389	COG1256	bacterial-type flagellum assembly
PhaeoP97_03392	COG0318	PFAM AMP-dependent synthetase and ligase
PhaeoP97_03397	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
PhaeoP97_03398	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
PhaeoP97_03404	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
PhaeoP97_03406	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
PhaeoP97_03407	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
PhaeoP97_03408	COG1999	signal sequence binding
PhaeoP97_03411	COG0802	atpase or kinase
PhaeoP97_03412	COG3178	'Phosphotransferase
PhaeoP97_03420	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
PhaeoP97_03422	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
PhaeoP97_03428	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
PhaeoP97_03429	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
PhaeoP97_03430	COG0237	dephospho-CoA kinase activity
PhaeoP97_03431	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
PhaeoP97_03432	COG0424	maF-like protein
PhaeoP97_03435	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
PhaeoP97_03436	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
PhaeoP97_03437	COG0445	tRNA wobble uridine modification
PhaeoP97_03438	COG0357	Ribosomal RNA small subunit methyltransferase G
PhaeoP97_03439	COG1192	Involved in chromosome partitioning
PhaeoP97_03440	COG1475	DNA binding
PhaeoP97_03441	COG2832	Protein of unknown function (DUF454)
PhaeoP97_03442	COG0635	Involved in the biosynthesis of porphyrin-containing compound
PhaeoP97_03443	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
PhaeoP97_03444	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
PhaeoP97_03445	COG1420	regulation of RNA biosynthetic process
PhaeoP97_03446	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
PhaeoP97_03447	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
PhaeoP97_03448	COG0281	malic enzyme
PhaeoP97_03448	COG0280	phosphate acetyltransferase
PhaeoP97_03450	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PhaeoP97_03455	COG0137	argininosuccinate synthase activity
PhaeoP97_03457	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
PhaeoP97_03459	COG0745	RESPONSE REGULATOR receiver
PhaeoP97_03461	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
PhaeoP97_03462	COG0494	nUDIX hydrolase
PhaeoP97_03463	COG0617	tRNA 3'-terminal CCA addition
PhaeoP97_03465	COG1132	(ABC) transporter
PhaeoP97_03466	COG1132	(ABC) transporter
PhaeoP97_03467	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PhaeoP97_03469	COG3034	peptidoglycan biosynthetic process
PhaeoP97_03473	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
PhaeoP97_03475	COG2226	methyltransferase
PhaeoP97_03476	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PhaeoP97_03478	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
PhaeoP97_03480	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
PhaeoP97_03483	COG0779	Required for maturation of 30S ribosomal subunits
PhaeoP97_03486	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
PhaeoP97_03488	COG0494	nUDIX hydrolase
PhaeoP97_03489	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
PhaeoP97_03490	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PhaeoP97_03491	COG0653	protein targeting
PhaeoP97_03494	COG2003	Belongs to the UPF0758 family
PhaeoP97_03495	COG0484	heat shock protein binding
PhaeoP97_03496	COG0443	Heat shock 70 kDa protein
PhaeoP97_03497	COG3145	DNA-N1-methyladenine dioxygenase activity
PhaeoP97_03500	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
PhaeoP97_03502	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
PhaeoP97_03504	COG1177	transmembrane transport
PhaeoP97_03505	COG1176	ABC-type spermidine putrescine transport system, permease component I
PhaeoP97_03506	COG3842	ATPase activity
PhaeoP97_03508	COG1802	Transcriptional regulator
PhaeoP97_03510	COG3842	ATPase activity
PhaeoP97_03512	COG1176	ABC-type spermidine putrescine transport system, permease component I
PhaeoP97_03514	COG0183	Belongs to the thiolase family
PhaeoP97_03515	COG1396	sequence-specific DNA binding
PhaeoP97_03516	COG0156	8-amino-7-oxononanoate synthase activity
PhaeoP97_03518	COG1063	alcohol dehydrogenase
PhaeoP97_03519	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
PhaeoP97_03520	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PhaeoP97_03523	COG3830	Belongs to the UPF0237 family
PhaeoP97_03523	COG0560	Phosphoserine phosphatase
PhaeoP97_03525	COG0640	Transcriptional regulator
PhaeoP97_03531	COG0820	rRNA (adenine-C2-)-methyltransferase activity
PhaeoP97_03535	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
PhaeoP97_03537	COG2171	N-acyltransferase activity
PhaeoP97_03538	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
PhaeoP97_03540	COG2986	histidine ammonia-lyase
PhaeoP97_03541	COG1228	amidohydrolase
PhaeoP97_03545	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PhaeoP97_03548	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
PhaeoP97_03549	COG0557	exoribonuclease II activity
PhaeoP97_03552	COG2951	lytic endotransglycosylase activity
PhaeoP97_03554	COG2226	methyltransferase
PhaeoP97_03555	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
PhaeoP97_03557	COG0268	Binds directly to 16S ribosomal RNA
PhaeoP97_03559	COG1192	Involved in chromosome partitioning
PhaeoP97_03565	COG1215	transferase activity, transferring glycosyl groups
PhaeoP97_03569	COG1215	transferase activity, transferring glycosyl groups
PhaeoP97_03570	COG1215	transferase activity, transferring glycosyl groups
PhaeoP97_03571	COG0438	transferase activity, transferring glycosyl groups
PhaeoP97_03574	COG0840	transmembrane signaling receptor activity
PhaeoP97_03577	COG1522	sequence-specific DNA binding
PhaeoP97_03584	COG0783	Belongs to the Dps family
PhaeoP97_03588	COG0840	transmembrane signaling receptor activity
PhaeoP97_03590	COG2801	Transposase and inactivated derivatives
PhaeoP97_03591	COG2244	polysaccharide biosynthetic process
PhaeoP97_03593	COG2017	converts alpha-aldose to the beta-anomer
PhaeoP97_03594	COG1858	cytochrome C peroxidase
PhaeoP97_03597	COG4213	ABC transporter substrate-binding protein
PhaeoP97_03598	COG4214	carbohydrate transport
PhaeoP97_03599	COG1129	ABC transporter
PhaeoP97_03600	COG0789	Transcriptional regulator
PhaeoP97_03604	COG1793	dna ligase
PhaeoP97_03607	COG1012	belongs to the aldehyde dehydrogenase family
PhaeoP97_03609	COG1573	uracil-dna glycosylase
PhaeoP97_03613	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PhaeoP97_03614	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
PhaeoP97_03617	COG2951	lytic endotransglycosylase activity
PhaeoP97_03620	COG1366	Belongs to the anti-sigma-factor antagonist family
PhaeoP97_03621	COG1366	Belongs to the anti-sigma-factor antagonist family
PhaeoP97_03623	COG2172	sigma factor antagonist activity
PhaeoP97_03625	COG1473	amidohydrolase
PhaeoP97_03626	COG0133	tryptophan synthase activity
PhaeoP97_03627	COG1522	sequence-specific DNA binding
PhaeoP97_03636	COG1720	tRNA m6t6A37 methyltransferase activity
PhaeoP97_03640	COG4172	Belongs to the ABC transporter superfamily
PhaeoP97_03641	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
PhaeoP97_03644	COG1960	acyl-CoA dehydrogenase activity
PhaeoP97_03648	COG0583	DNA-binding transcription factor activity
PhaeoP97_03649	COG0583	DNA-binding transcription factor activity
PhaeoP97_03650	COG4608	Belongs to the ABC transporter superfamily
PhaeoP97_03651	COG0444	Belongs to the ABC transporter superfamily
PhaeoP97_03652	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
PhaeoP97_03653	COG0601	transmembrane transport
PhaeoP97_03665	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
PhaeoP97_03666	COG3002	Belongs to the UPF0753 family
PhaeoP97_03667	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
PhaeoP97_03671	COG0668	transmembrane transport
PhaeoP97_03672	COG1285	pathogenesis
PhaeoP97_03674	COG3237	CsbD-like
PhaeoP97_03675	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PhaeoP97_03678	COG1278	Cold shock
PhaeoP97_03682	COG2801	Transposase and inactivated derivatives
PhaeoP97_03683	COG2801	Transposase and inactivated derivatives
PhaeoP97_03685	COG1024	Enoyl-CoA hydratase
PhaeoP97_03686	COG1960	acyl-CoA dehydrogenase activity
PhaeoP97_03690	COG0673	inositol 2-dehydrogenase activity
PhaeoP97_03693	COG1653	transport
PhaeoP97_03697	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PhaeoP97_03699	COG0446	pyridine nucleotide-disulphide oxidoreductase
PhaeoP97_03699	COG0404	The glycine cleavage system catalyzes the degradation of glycine
PhaeoP97_03701	COG2207	Transcriptional regulator
PhaeoP97_03703	COG1012	belongs to the aldehyde dehydrogenase family
PhaeoP97_03705	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
PhaeoP97_03708	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
PhaeoP97_03713	COG0583	DNA-binding transcription factor activity
PhaeoP97_03721	COG0811	peptide transport
PhaeoP97_03723	COG1629	transport
PhaeoP97_03724	COG3720	iron ion transport
PhaeoP97_03725	COG4558	Periplasmic binding protein
PhaeoP97_03726	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PhaeoP97_03727	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
PhaeoP97_03730	COG2207	Transcriptional regulator
PhaeoP97_03735	COG0745	RESPONSE REGULATOR receiver
PhaeoP97_03736	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
PhaeoP97_03739	COG0745	RESPONSE REGULATOR receiver
PhaeoP97_03741	COG0840	transmembrane signaling receptor activity
PhaeoP97_03742	COG2201	protein-glutamate methylesterase activity
PhaeoP97_03744	COG0725	ABC transporter, periplasmic molybdate-binding protein
PhaeoP97_03745	COG4149	molybdate abc transporter
PhaeoP97_03746	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
PhaeoP97_03747	COG0445	tRNA wobble uridine modification
PhaeoP97_03749	COG0735	belongs to the Fur family
PhaeoP97_03751	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PhaeoP97_03756	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
PhaeoP97_03762	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PhaeoP97_03765	COG1192	Involved in chromosome partitioning
PhaeoP97_03766	COG1475	DNA binding
PhaeoP97_03767	COG1414	Transcriptional regulator
PhaeoP97_03769	COG1309	transcriptional regulator
PhaeoP97_03782	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
PhaeoP97_03784	COG2801	Transposase and inactivated derivatives
PhaeoP97_03790	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
PhaeoP97_03792	COG0583	DNA-binding transcription factor activity
PhaeoP97_03795	COG1024	Enoyl-CoA hydratase
PhaeoP97_03802	COG0596	Alpha beta hydrolase
PhaeoP97_03806	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PhaeoP97_03807	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
PhaeoP97_03809	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
PhaeoP97_03811	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
PhaeoP97_03818	COG1917	Cupin 2, conserved barrel domain protein
PhaeoP97_03821	COG2814	Major facilitator Superfamily
PhaeoP97_03822	COG2957	Belongs to the agmatine deiminase family
PhaeoP97_03825	COG2801	Transposase and inactivated derivatives
PhaeoP97_03831	COG0714	Associated with various cellular activities
PhaeoP97_03833	COG2010	Cytochrome c
PhaeoP97_03845	COG2801	Transposase and inactivated derivatives
PhaeoP97_03846	COG2801	Transposase and inactivated derivatives
PhaeoP97_03852	COG3842	ATPase activity
PhaeoP97_03854	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
PhaeoP97_03855	COG3958	Transketolase
PhaeoP97_03856	COG1802	Transcriptional regulator
PhaeoP97_03857	COG1028	Short-chain dehydrogenase reductase Sdr
PhaeoP97_03858	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
PhaeoP97_03860	COG1176	ABC-type spermidine putrescine transport system, permease component I
PhaeoP97_03864	COG0741	lytic transglycosylase activity
PhaeoP97_03864	COG0739	heme binding
PhaeoP97_03864	COG1196	nuclear chromosome segregation
PhaeoP97_03876	COG3971	2-oxopent-4-enoate hydratase activity
PhaeoP97_03877	COG0179	Fumarylacetoacetate (FAA) hydrolase
PhaeoP97_03881	COG3384	dioxygenase
PhaeoP97_03882	COG1012	belongs to the aldehyde dehydrogenase family
PhaeoP97_03885	COG5441	Belongs to the UPF0261 family
PhaeoP97_03886	COG1012	belongs to the aldehyde dehydrogenase family
PhaeoP97_03891	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
PhaeoP97_03901	COG1192	Involved in chromosome partitioning
PhaeoP97_03902	COG1475	DNA binding
PhaeoP97_03908	COG1196	nuclear chromosome segregation
PhaeoP97_03910	COG0629	single-stranded DNA binding
PhaeoP97_03926	COG3831	ATPase activity
PhaeoP97_03949	COG4962	Type ii secretion system protein e
PhaeoP97_03956	COG1196	nuclear chromosome segregation
PhaeoP97_03956	COG0741	lytic transglycosylase activity
PhaeoP97_03956	COG0739	heme binding
PhaeoP97_03960	COG1196	nuclear chromosome segregation
PhaeoP97_03960	COG0741	lytic transglycosylase activity
PhaeoP97_03960	COG0739	heme binding
PhaeoP97_03973	COG3457	Alanine racemase
PhaeoP97_03981	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PhaeoP97_03983	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
PhaeoP97_03984	COG0459	protein refolding
PhaeoP97_03987	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
PhaeoP97_03989	COG1192	Involved in chromosome partitioning
PhaeoP97_03991	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
PhaeoP97_03992	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PhaeoP97_03993	COG1216	Glycosyl transferase, family 2
PhaeoP97_04004	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
PhaeoP97_04005	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PhaeoP97_04007	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PhaeoP97_04011	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
PhaeoP97_04013	COG1088	dTDP-glucose 4,6-dehydratase activity
PhaeoP97_04019	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
PhaeoP97_04020	COG1086	Polysaccharide biosynthesis protein
PhaeoP97_04021	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PhaeoP97_04024	COG1126	abc transporter atp-binding protein
PhaeoP97_04032	COG2801	Transposase and inactivated derivatives
PhaeoP97_04033	COG2801	Transposase and inactivated derivatives
PhaeoP97_04043	COG1192	Involved in chromosome partitioning
PhaeoP97_04044	COG1475	DNA binding
PhaeoP97_04046	COG2205	protein histidine kinase activity
PhaeoP97_04049	COG0640	Transcriptional regulator
PhaeoP97_04060	COG1181	Belongs to the D-alanine--D-alanine ligase family
PhaeoP97_04062	COG4569	acetaldehyde dehydrogenase (acetylating) activity
PhaeoP97_04065	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
PhaeoP97_04065	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
PhaeoP97_04066	COG0509	glycine decarboxylation via glycine cleavage system
PhaeoP97_04067	COG0404	The glycine cleavage system catalyzes the degradation of glycine
PhaeoP97_04068	COG1115	amino acid carrier protein
PhaeoP97_04069	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
PhaeoP97_04078	COG0583	DNA-binding transcription factor activity
PhaeoP97_04079	COG2132	Multicopper oxidase