PhaeoP97_00001	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00001	SM00760	Bacterial dnaA protein helix-turn-helix domain
PhaeoP97_00002	SM00480	DNA polymerase III beta subunit
PhaeoP97_00003	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00007	SM00387	Histidine kinase-like ATPases
PhaeoP97_00007	SM00433	TopoisomeraseII
PhaeoP97_00019	SM00028	Tetratricopeptide repeats
PhaeoP97_00019	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP97_00020	SM00014	Acid phosphatase homologues
PhaeoP97_00047	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_00049	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00056	SM00354	helix_turn _helix lactose operon repressor
PhaeoP97_00066	SM00450	Rhodanese Homology Domain
PhaeoP97_00068	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PhaeoP97_00068	SM00091	PAS domain
PhaeoP97_00068	SM00387	Histidine kinase-like ATPases
PhaeoP97_00068	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_00068	SM00448	cheY-homologous receiver domain
PhaeoP97_00072	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00092	SM00341	Helicase and RNase D C-terminal
PhaeoP97_00092	SM00487	DEAD-like helicases superfamily
PhaeoP97_00092	SM00490	helicase superfamily c-terminal domain
PhaeoP97_00092	SM00956	PhaeoP97_00092
PhaeoP97_00094	SM00387	Histidine kinase-like ATPases
PhaeoP97_00094	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_00094	SM00448	cheY-homologous receiver domain
PhaeoP97_00095	SM01359	PhaeoP97_00095
PhaeoP97_00095	SM01360	PhaeoP97_00095
PhaeoP97_00104	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
PhaeoP97_00104	SM00474	3'-5' exonuclease
PhaeoP97_00104	SM00475	5'-3' exonuclease
PhaeoP97_00104	SM00482	DNA polymerase A domain
PhaeoP97_00106	SM00052	Putative diguanylate phosphodiesterase
PhaeoP97_00106	SM00267	diguanylate cyclase
PhaeoP97_00108	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00112	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP97_00127	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP97_00132	SM00947	Carbonic anhydrase
PhaeoP97_00135	SM00859	Semialdehyde dehydrogenase, NAD binding domain
PhaeoP97_00140	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00141	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00145	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_00148	SM00420	helix_turn_helix, Deoxyribose operon repressor
PhaeoP97_00148	SM01134	PhaeoP97_00148
PhaeoP97_00152	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00160	SM00248	ankyrin repeats
PhaeoP97_00168	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00182	SM00422	helix_turn_helix, mercury resistance
PhaeoP97_00184	SM00020	Trypsin-like serine protease
PhaeoP97_00186	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00189	SM00763	PrkA AAA domain
PhaeoP97_00192	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_00192	SM00895	PhaeoP97_00192
PhaeoP97_00195	SM00422	helix_turn_helix, mercury resistance
PhaeoP97_00203	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00204	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00207	SM00849	Metallo-beta-lactamase superfamily
PhaeoP97_00210	SM00829	Enoylreductase
PhaeoP97_00218	SM00480	DNA polymerase III beta subunit
PhaeoP97_00224	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_00266	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP97_00272	SM00849	Metallo-beta-lactamase superfamily
PhaeoP97_00275	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_00276	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
PhaeoP97_00286	SM00830	Chorismate mutase type II
PhaeoP97_00290	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00290	SM00962	SRP54-type protein, GTPase domain
PhaeoP97_00290	SM00963	SRP54-type protein, helical bundle domain
PhaeoP97_00292	SM00838	Elongation factor G C-terminus
PhaeoP97_00292	SM00889	Elongation factor G, domain IV
PhaeoP97_00296	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP97_00303	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_00303	SM00895	PhaeoP97_00303
PhaeoP97_00327	SM01409	PhaeoP97_00327
PhaeoP97_00328	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PhaeoP97_00328	SM00954	Region found in RelA / SpoT proteins
PhaeoP97_00333	SM00358	Double-stranded RNA binding motif
PhaeoP97_00333	SM00535	Ribonuclease III family
PhaeoP97_00342	SM00448	cheY-homologous receiver domain
PhaeoP97_00342	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP97_00343	SM00387	Histidine kinase-like ATPases
PhaeoP97_00343	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_00351	SM00893	Electron transfer flavoprotein domain
PhaeoP97_00352	SM00893	Electron transfer flavoprotein domain
PhaeoP97_00356	SM00287	Bacterial SH3 domain homologues
PhaeoP97_00357	SM00434	DNA Topoisomerase IV
PhaeoP97_00365	SM00028	Tetratricopeptide repeats
PhaeoP97_00367	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
PhaeoP97_00367	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
PhaeoP97_00368	SM00649	Ribosomal protein L11/L12
PhaeoP97_00373	SM00663	RNA polymerase I subunit A N-terminus
PhaeoP97_00380	SM00838	Elongation factor G C-terminus
PhaeoP97_00380	SM00889	Elongation factor G, domain IV
PhaeoP97_00383	SM01403	PhaeoP97_00383
PhaeoP97_00388	SM01382	PhaeoP97_00388
PhaeoP97_00388	SM01383	PhaeoP97_00388
PhaeoP97_00391	SM00322	K homology RNA-binding domain
PhaeoP97_00399	SM01374	PhaeoP97_00399
PhaeoP97_00400	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
PhaeoP97_00416	SM00662	RNA polymerases D
PhaeoP97_00418	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PhaeoP97_00419	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00421	SM00363	S4 RNA-binding domain
PhaeoP97_00424	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP97_00427	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00429	SM00855	Phosphoglycerate mutase family
PhaeoP97_00436	SM00052	Putative diguanylate phosphodiesterase
PhaeoP97_00436	SM00267	diguanylate cyclase
PhaeoP97_00439	SM01234	PhaeoP97_00439
PhaeoP97_00444	SM00387	Histidine kinase-like ATPases
PhaeoP97_00444	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_00451	SM00895	PhaeoP97_00451
PhaeoP97_00454	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_00454	SM00871	Bacterial transcription activator, effector binding domain
PhaeoP97_00456	SM00344	helix_turn_helix ASNC type
PhaeoP97_00460	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
PhaeoP97_00463	SM00829	Enoylreductase
PhaeoP97_00465	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
PhaeoP97_00465	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
PhaeoP97_00466	SM00344	helix_turn_helix ASNC type
PhaeoP97_00471	SM00829	Enoylreductase
PhaeoP97_00476	SM00493	PhaeoP97_00476
PhaeoP97_00479	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00492	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00493	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP97_00493	SM00419	helix_turn_helix, cAMP Regulatory protein
PhaeoP97_00499	SM00460	Transglutaminase/protease-like homologues
PhaeoP97_00510	SM00641	Glycosyl hydrolases family 25
PhaeoP97_00523	SM01329	PhaeoP97_00523
PhaeoP97_00536	SM00020	Trypsin-like serine protease
PhaeoP97_00559	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_00563	SM00450	Rhodanese Homology Domain
PhaeoP97_00566	SM00938	Nitrogen regulatory protein P-II
PhaeoP97_00571	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00585	SM00852	Probable molybdopterin binding domain
PhaeoP97_00599	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_00601	SM00478	endonuclease III
PhaeoP97_00602	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_00612	SM01130	PhaeoP97_00612
PhaeoP97_00618	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
PhaeoP97_00624	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_00626	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP97_00634	SM00796	Allophanate hydrolase subunit 1
PhaeoP97_00635	SM00797	Allophanate hydrolase subunit 2
PhaeoP97_00638	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PhaeoP97_00638	SM00448	cheY-homologous receiver domain
PhaeoP97_00638	SM00911	HWE histidine kinase
PhaeoP97_00650	SM00833	Cobalamin synthesis protein cobW C-terminal domain
PhaeoP97_00654	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00659	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_00662	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00663	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00671	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00673	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_00673	SM00895	PhaeoP97_00673
PhaeoP97_00690	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00692	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
PhaeoP97_00693	SM01092	CO dehydrogenase flavoprotein C-terminal domain
PhaeoP97_00694	SM00481	DNA polymerase alpha chain like domain
PhaeoP97_00707	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00714	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00721	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_00721	SM00866	PhaeoP97_00721
PhaeoP97_00726	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
PhaeoP97_00735	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00746	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
PhaeoP97_00749	SM00320	WD40 repeats
PhaeoP97_00751	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00751	SM00448	cheY-homologous receiver domain
PhaeoP97_00752	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP97_00752	SM00387	Histidine kinase-like ATPases
PhaeoP97_00752	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_00754	SM00822	PhaeoP97_00754
PhaeoP97_00763	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
PhaeoP97_00785	SM00833	Cobalamin synthesis protein cobW C-terminal domain
PhaeoP97_00792	SM00420	helix_turn_helix, Deoxyribose operon repressor
PhaeoP97_00792	SM01134	PhaeoP97_00792
PhaeoP97_00801	SM00450	Rhodanese Homology Domain
PhaeoP97_00803	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_00808	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_00814	SM00054	EF-hand, calcium binding motif
PhaeoP97_00818	SM00267	diguanylate cyclase
PhaeoP97_00818	SM00448	cheY-homologous receiver domain
PhaeoP97_00824	SM00267	diguanylate cyclase
PhaeoP97_00838	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
PhaeoP97_00844	SM00400	zinc finger
PhaeoP97_00844	SM00493	PhaeoP97_00844
PhaeoP97_00866	SM00363	S4 RNA-binding domain
PhaeoP97_00868	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP97_00868	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP97_00868	SM01049	PhaeoP97_00868
PhaeoP97_00877	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP97_00877	SM00876	Biotin and Thiamin Synthesis associated domain
PhaeoP97_00885	SM00967	RNA 2'-O ribose methyltransferase substrate binding
PhaeoP97_00887	SM00881	CoA binding domain
PhaeoP97_00897	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_00908	SM00878	Biotin carboxylase C-terminal domain
PhaeoP97_00911	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PhaeoP97_00911	SM00267	diguanylate cyclase
PhaeoP97_00925	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_00937	SM00842	Cell division protein FtsA
PhaeoP97_00938	SM00864	Tubulin/FtsZ family, GTPase domain
PhaeoP97_00938	SM00865	Tubulin/FtsZ family, C-terminal domain
PhaeoP97_00946	SM00327	von Willebrand factor (vWF) type A domain
PhaeoP97_00949	SM00487	DEAD-like helicases superfamily
PhaeoP97_00949	SM00490	helicase superfamily c-terminal domain
PhaeoP97_00951	SM00271	DnaJ molecular chaperone homology domain
PhaeoP97_00955	SM01126	PhaeoP97_00955
PhaeoP97_00956	SM00845	GatB domain
PhaeoP97_00957	SM00316	Ribosomal protein S1-like RNA-binding domain
PhaeoP97_00957	SM00732	Likely ribonuclease with RNase H fold.
PhaeoP97_00965	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
PhaeoP97_00972	SM00849	Metallo-beta-lactamase superfamily
PhaeoP97_00974	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
PhaeoP97_00974	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
PhaeoP97_00977	SM00422	helix_turn_helix, mercury resistance
PhaeoP97_00984	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_00991	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP97_01004	SM00878	Biotin carboxylase C-terminal domain
PhaeoP97_01014	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
PhaeoP97_01017	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
PhaeoP97_01029	SM00849	Metallo-beta-lactamase superfamily
PhaeoP97_01031	SM00487	DEAD-like helicases superfamily
PhaeoP97_01031	SM00490	helicase superfamily c-terminal domain
PhaeoP97_01035	SM00886	Stress responsive A/B Barrel Domain
PhaeoP97_01039	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01046	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01047	SM00257	Lysin motif
PhaeoP97_01058	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01060	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01062	SM01005	Alanine racemase, C-terminal domain
PhaeoP97_01068	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01069	SM00327	von Willebrand factor (vWF) type A domain
PhaeoP97_01079	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01089	SM00354	helix_turn _helix lactose operon repressor
PhaeoP97_01097	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01107	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PhaeoP97_01109	SM00836	DALR anticodon binding domain
PhaeoP97_01109	SM01016	Arginyl tRNA synthetase N terminal dom
PhaeoP97_01117	SM00422	helix_turn_helix, mercury resistance
PhaeoP97_01118	SM00411	bacterial (prokaryotic) histone like domain
PhaeoP97_01125	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01126	SM01266	PhaeoP97_01126
PhaeoP97_01135	SM00487	DEAD-like helicases superfamily
PhaeoP97_01135	SM00490	helicase superfamily c-terminal domain
PhaeoP97_01138	SM01192	PhaeoP97_01138
PhaeoP97_01138	SM01193	PhaeoP97_01138
PhaeoP97_01147	SM01230	PhaeoP97_01147
PhaeoP97_01149	SM01230	PhaeoP97_01149
PhaeoP97_01152	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP97_01153	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01159	SM00344	helix_turn_helix ASNC type
PhaeoP97_01161	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
PhaeoP97_01171	SM00344	helix_turn_helix ASNC type
PhaeoP97_01172	SM00028	Tetratricopeptide repeats
PhaeoP97_01176	SM00387	Histidine kinase-like ATPases
PhaeoP97_01176	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_01176	SM00448	cheY-homologous receiver domain
PhaeoP97_01176	SM01079	PhaeoP97_01176
PhaeoP97_01177	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP97_01177	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP97_01188	SM00919	Malic enzyme, NAD binding domain
PhaeoP97_01188	SM01274	PhaeoP97_01188
PhaeoP97_01191	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
PhaeoP97_01205	SM00422	helix_turn_helix, mercury resistance
PhaeoP97_01206	SM00422	helix_turn_helix, mercury resistance
PhaeoP97_01215	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_01216	SM00450	Rhodanese Homology Domain
PhaeoP97_01224	SM00450	Rhodanese Homology Domain
PhaeoP97_01234	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP97_01247	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_01249	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01249	SM00994	ClpX C4-type zinc finger
PhaeoP97_01249	SM01086	C-terminal, D2-small domain, of ClpB protein
PhaeoP97_01256	SM00878	Biotin carboxylase C-terminal domain
PhaeoP97_01259	SM00421	helix_turn_helix, Lux Regulon
PhaeoP97_01260	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01261	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01265	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_01266	SM00448	cheY-homologous receiver domain
PhaeoP97_01268	SM00387	Histidine kinase-like ATPases
PhaeoP97_01268	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_01273	SM00849	Metallo-beta-lactamase superfamily
PhaeoP97_01284	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01290	SM00903	Flavin reductase like domain
PhaeoP97_01301	SM00849	Metallo-beta-lactamase superfamily
PhaeoP97_01302	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP97_01302	SM00387	Histidine kinase-like ATPases
PhaeoP97_01302	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_01304	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_01304	SM00866	PhaeoP97_01304
PhaeoP97_01307	SM00903	Flavin reductase like domain
PhaeoP97_01311	SM00671	Sel1-like repeats.
PhaeoP97_01315	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01319	SM00354	helix_turn _helix lactose operon repressor
PhaeoP97_01323	SM00849	Metallo-beta-lactamase superfamily
PhaeoP97_01327	SM00474	3'-5' exonuclease
PhaeoP97_01333	SM01018	B12 binding domain
PhaeoP97_01334	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP97_01340	SM01211	PhaeoP97_01340
PhaeoP97_01341	SM00387	Histidine kinase-like ATPases
PhaeoP97_01341	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_01342	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01342	SM00448	cheY-homologous receiver domain
PhaeoP97_01357	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01381	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_01383	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_01383	SM00895	PhaeoP97_01383
PhaeoP97_01384	SM00829	Enoylreductase
PhaeoP97_01394	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PhaeoP97_01396	SM00354	helix_turn _helix lactose operon repressor
PhaeoP97_01402	SM00116	Domain in cystathionine beta-synthase and other proteins.
PhaeoP97_01402	SM01091	Transporter associated domain
PhaeoP97_01411	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01415	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_01422	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PhaeoP97_01425	SM00935	Outer membrane protein (OmpH-like)
PhaeoP97_01433	SM00448	cheY-homologous receiver domain
PhaeoP97_01433	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP97_01434	SM00292	breast cancer carboxy-terminal domain
PhaeoP97_01434	SM00532	Ligase N family
PhaeoP97_01435	SM00487	DEAD-like helicases superfamily
PhaeoP97_01435	SM00490	helicase superfamily c-terminal domain
PhaeoP97_01448	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_01465	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP97_01475	SM00387	Histidine kinase-like ATPases
PhaeoP97_01475	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_01476	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01476	SM00448	cheY-homologous receiver domain
PhaeoP97_01477	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP97_01477	SM00387	Histidine kinase-like ATPases
PhaeoP97_01477	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_01478	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01478	SM00448	cheY-homologous receiver domain
PhaeoP97_01487	SM01004	Delta-aminolevulinic acid dehydratase
PhaeoP97_01489	SM00487	DEAD-like helicases superfamily
PhaeoP97_01489	SM00490	helicase superfamily c-terminal domain
PhaeoP97_01489	SM00982	PhaeoP97_01489
PhaeoP97_01489	SM01058	CarD-like/TRCF domain
PhaeoP97_01493	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_01496	SM00226	Low molecular weight phosphatase family
PhaeoP97_01497	SM00226	Low molecular weight phosphatase family
PhaeoP97_01497	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP97_01511	SM00434	DNA Topoisomerase IV
PhaeoP97_01522	SM00116	Domain in cystathionine beta-synthase and other proteins.
PhaeoP97_01522	SM01240	PhaeoP97_01522
PhaeoP97_01526	SM00855	Phosphoglycerate mutase family
PhaeoP97_01527	SM00849	Metallo-beta-lactamase superfamily
PhaeoP97_01528	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01531	SM00420	helix_turn_helix, Deoxyribose operon repressor
PhaeoP97_01531	SM01134	PhaeoP97_01531
PhaeoP97_01533	SM00387	Histidine kinase-like ATPases
PhaeoP97_01533	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_01533	SM00448	cheY-homologous receiver domain
PhaeoP97_01535	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01536	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PhaeoP97_01539	SM00838	Elongation factor G C-terminus
PhaeoP97_01541	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PhaeoP97_01549	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01561	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
PhaeoP97_01566	SM00563	Phosphate acyltransferases
PhaeoP97_01570	SM00421	helix_turn_helix, Lux Regulon
PhaeoP97_01572	SM00829	Enoylreductase
PhaeoP97_01575	SM00346	helix_turn_helix isocitrate lyase regulation
PhaeoP97_01585	SM00448	cheY-homologous receiver domain
PhaeoP97_01585	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP97_01587	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01591	SM00387	Histidine kinase-like ATPases
PhaeoP97_01591	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_01594	SM00072	Guanylate kinase homologues.
PhaeoP97_01598	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_01601	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01602	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01607	SM00825	Beta-ketoacyl synthase
PhaeoP97_01622	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01628	SM01092	CO dehydrogenase flavoprotein C-terminal domain
PhaeoP97_01630	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
PhaeoP97_01633	SM01007	Class II Aldolase and Adducin N-terminal domain
PhaeoP97_01638	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01639	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01640	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
PhaeoP97_01644	SM00344	helix_turn_helix ASNC type
PhaeoP97_01648	SM00507	HNH nucleases
PhaeoP97_01651	SM00478	endonuclease III
PhaeoP97_01654	SM00917	LeuA allosteric (dimerisation) domain
PhaeoP97_01655	SM00840	PhaeoP97_01655
PhaeoP97_01660	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01661	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01666	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
PhaeoP97_01666	SM00091	PAS domain
PhaeoP97_01666	SM00138	Methyltransferase, chemotaxis proteins 
PhaeoP97_01667	SM00861	Transketolase, pyrimidine binding domain
PhaeoP97_01669	SM00344	helix_turn_helix ASNC type
PhaeoP97_01675	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01680	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_01680	SM00895	PhaeoP97_01680
PhaeoP97_01686	SM00357	Cold shock protein domain
PhaeoP97_01697	SM00986	Uracil DNA glycosylase superfamily
PhaeoP97_01697	SM00987	UreE urease accessory protein, C-terminal domain 
PhaeoP97_01700	SM00852	Probable molybdopterin binding domain
PhaeoP97_01713	SM00859	Semialdehyde dehydrogenase, NAD binding domain
PhaeoP97_01715	SM00563	Phosphate acyltransferases
PhaeoP97_01725	SM00861	Transketolase, pyrimidine binding domain
PhaeoP97_01728	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
PhaeoP97_01731	SM00116	Domain in cystathionine beta-synthase and other proteins.
PhaeoP97_01738	SM00028	Tetratricopeptide repeats
PhaeoP97_01739	SM00481	DNA polymerase alpha chain like domain
PhaeoP97_01747	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01777	SM00861	Transketolase, pyrimidine binding domain
PhaeoP97_01781	SM00971	Serine acetyltransferase, N-terminal
PhaeoP97_01801	SM00825	Beta-ketoacyl synthase
PhaeoP97_01805	SM00822	PhaeoP97_01805
PhaeoP97_01806	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
PhaeoP97_01807	SM00867	YceI-like domain 
PhaeoP97_01816	SM01092	CO dehydrogenase flavoprotein C-terminal domain
PhaeoP97_01817	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
PhaeoP97_01819	SM00852	Probable molybdopterin binding domain
PhaeoP97_01830	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
PhaeoP97_01837	SM00357	Cold shock protein domain
PhaeoP97_01840	SM00903	Flavin reductase like domain
PhaeoP97_01843	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_01843	SM00895	PhaeoP97_01843
PhaeoP97_01846	SM00344	helix_turn_helix ASNC type
PhaeoP97_01847	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP97_01850	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01852	SM00867	YceI-like domain 
PhaeoP97_01865	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP97_01865	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP97_01865	SM01358	PhaeoP97_01865
PhaeoP97_01868	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01901	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01907	SM00938	Nitrogen regulatory protein P-II
PhaeoP97_01908	SM01230	PhaeoP97_01908
PhaeoP97_01915	SM00998	Adenylosuccinate lyase C-terminus
PhaeoP97_01926	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01930	SM01323	PhaeoP97_01930
PhaeoP97_01936	SM00564	beta-propeller repeat
PhaeoP97_01941	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01942	SM00257	Lysin motif
PhaeoP97_01954	SM00732	Likely ribonuclease with RNase H fold.
PhaeoP97_01956	SM00507	HNH nucleases
PhaeoP97_01961	SM00419	helix_turn_helix, cAMP Regulatory protein
PhaeoP97_01964	SM00091	PAS domain
PhaeoP97_01964	SM00387	Histidine kinase-like ATPases
PhaeoP97_01964	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_01964	SM00448	cheY-homologous receiver domain
PhaeoP97_01966	SM00421	helix_turn_helix, Lux Regulon
PhaeoP97_01966	SM00448	cheY-homologous receiver domain
PhaeoP97_01974	SM00562	PhaeoP97_01974
PhaeoP97_01975	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_01985	SM00650	Ribosomal RNA adenine dimethylases
PhaeoP97_01988	SM00937	PhaeoP97_01988
PhaeoP97_02009	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02020	SM00387	Histidine kinase-like ATPases
PhaeoP97_02020	SM01049	PhaeoP97_02020
PhaeoP97_02021	SM00421	helix_turn_helix, Lux Regulon
PhaeoP97_02021	SM00448	cheY-homologous receiver domain
PhaeoP97_02025	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_02028	SM00937	PhaeoP97_02028
PhaeoP97_02030	SM00646	PhaeoP97_02030
PhaeoP97_02042	SM00855	Phosphoglycerate mutase family
PhaeoP97_02044	SM00344	helix_turn_helix ASNC type
PhaeoP97_02045	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
PhaeoP97_02049	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02049	SM00464	Found in ATP-dependent protease La (LON)
PhaeoP97_02054	SM00244	prohibitin homologues
PhaeoP97_02056	SM01322	PhaeoP97_02056
PhaeoP97_02065	SM00448	cheY-homologous receiver domain
PhaeoP97_02066	SM00387	Histidine kinase-like ATPases
PhaeoP97_02066	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_02069	SM00344	helix_turn_helix ASNC type
PhaeoP97_02078	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP97_02080	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_02080	SM00866	PhaeoP97_02080
PhaeoP97_02087	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_02089	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_02099	SM00387	Histidine kinase-like ATPases
PhaeoP97_02099	SM00433	TopoisomeraseII
PhaeoP97_02103	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
PhaeoP97_02105	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02113	SM00271	DnaJ molecular chaperone homology domain
PhaeoP97_02120	SM00878	Biotin carboxylase C-terminal domain
PhaeoP97_02127	SM00235	Zinc-dependent metalloprotease
PhaeoP97_02129	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_02131	SM00829	Enoylreductase
PhaeoP97_02150	SM00116	Domain in cystathionine beta-synthase and other proteins.
PhaeoP97_02150	SM00924	MgtE intracellular N domain
PhaeoP97_02154	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_02155	SM00829	Enoylreductase
PhaeoP97_02164	SM00644	PhaeoP97_02164
PhaeoP97_02168	SM00849	Metallo-beta-lactamase superfamily
PhaeoP97_02171	SM00363	S4 RNA-binding domain
PhaeoP97_02183	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02185	SM01324	PhaeoP97_02185
PhaeoP97_02188	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02197	SM00346	helix_turn_helix isocitrate lyase regulation
PhaeoP97_02201	SM00421	helix_turn_helix, Lux Regulon
PhaeoP97_02201	SM00448	cheY-homologous receiver domain
PhaeoP97_02202	SM00897	FIST N domain
PhaeoP97_02202	SM01204	PhaeoP97_02202
PhaeoP97_02203	SM00387	Histidine kinase-like ATPases
PhaeoP97_02203	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_02208	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02216	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_02217	SM00822	PhaeoP97_02217
PhaeoP97_02219	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
PhaeoP97_02230	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02230	SM00962	SRP54-type protein, GTPase domain
PhaeoP97_02230	SM00963	SRP54-type protein, helical bundle domain
PhaeoP97_02234	SM01209	PhaeoP97_02234
PhaeoP97_02234	SM01210	PhaeoP97_02234
PhaeoP97_02239	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP97_02239	SM00419	helix_turn_helix, cAMP Regulatory protein
PhaeoP97_02240	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PhaeoP97_02241	SM00244	prohibitin homologues
PhaeoP97_02242	SM00244	prohibitin homologues
PhaeoP97_02253	SM00788	Adenylosuccinate synthetase
PhaeoP97_02260	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_02262	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_02267	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02270	SM00841	Elongation factor P, C-terminal
PhaeoP97_02270	SM01185	PhaeoP97_02270
PhaeoP97_02280	SM00838	Elongation factor G C-terminus
PhaeoP97_02285	SM00226	Low molecular weight phosphatase family
PhaeoP97_02289	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02290	SM00487	DEAD-like helicases superfamily
PhaeoP97_02290	SM00490	helicase superfamily c-terminal domain
PhaeoP97_02290	SM00847	Helicase associated domain (HA2)  Add an annotation
PhaeoP97_02301	SM00986	Uracil DNA glycosylase superfamily
PhaeoP97_02301	SM00987	UreE urease accessory protein, C-terminal domain 
PhaeoP97_02302	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02307	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP97_02315	SM01152	PhaeoP97_02315
PhaeoP97_02320	SM00448	cheY-homologous receiver domain
PhaeoP97_02327	SM00851	MGS-like domain
PhaeoP97_02327	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
PhaeoP97_02330	SM00020	Trypsin-like serine protease
PhaeoP97_02333	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_02349	SM00344	helix_turn_helix ASNC type
PhaeoP97_02357	SM01001	AIR carboxylase
PhaeoP97_02363	SM00883	Chaperonin 10 Kd subunit
PhaeoP97_02365	SM01131	PhaeoP97_02365
PhaeoP97_02366	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP97_02366	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP97_02369	SM00904	Riboflavin kinase
PhaeoP97_02375	SM01400	PhaeoP97_02375
PhaeoP97_02379	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02384	SM00849	Metallo-beta-lactamase superfamily
PhaeoP97_02385	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02385	SM01086	C-terminal, D2-small domain, of ClpB protein
PhaeoP97_02395	SM00344	helix_turn_helix ASNC type
PhaeoP97_02397	SM00363	S4 RNA-binding domain
PhaeoP97_02397	SM01390	PhaeoP97_02397
PhaeoP97_02416	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
PhaeoP97_02417	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
PhaeoP97_02421	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP97_02421	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP97_02431	SM00344	helix_turn_helix ASNC type
PhaeoP97_02437	SM01058	CarD-like/TRCF domain
PhaeoP97_02439	SM00363	S4 RNA-binding domain
PhaeoP97_02440	SM00490	helicase superfamily c-terminal domain
PhaeoP97_02441	SM00028	Tetratricopeptide repeats
PhaeoP97_02448	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02449	SM00346	helix_turn_helix isocitrate lyase regulation
PhaeoP97_02455	SM00822	PhaeoP97_02455
PhaeoP97_02460	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02463	SM00354	helix_turn _helix lactose operon repressor
PhaeoP97_02473	SM00354	helix_turn _helix lactose operon repressor
PhaeoP97_02475	SM00346	helix_turn_helix isocitrate lyase regulation
PhaeoP97_02480	SM00344	helix_turn_helix ASNC type
PhaeoP97_02491	SM00873	B3/4 domain
PhaeoP97_02491	SM00874	tRNA synthetase B5 domain
PhaeoP97_02491	SM00896	Ferredoxin-fold anticodon binding domain
PhaeoP97_02502	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02510	SM00479	PhaeoP97_02510
PhaeoP97_02512	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02518	SM00936	Penicillin-binding protein 5, C-terminal domain 
PhaeoP97_02520	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02522	SM00849	Metallo-beta-lactamase superfamily
PhaeoP97_02527	SM00448	cheY-homologous receiver domain
PhaeoP97_02527	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP97_02528	SM00387	Histidine kinase-like ATPases
PhaeoP97_02528	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_02530	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02531	SM00642	Alpha-amylase domain
PhaeoP97_02535	SM00354	helix_turn _helix lactose operon repressor
PhaeoP97_02552	SM00487	DEAD-like helicases superfamily
PhaeoP97_02552	SM00490	helicase superfamily c-terminal domain
PhaeoP97_02568	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02572	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02580	SM00357	Cold shock protein domain
PhaeoP97_02582	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02588	SM00267	diguanylate cyclase
PhaeoP97_02590	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
PhaeoP97_02591	SM00917	LeuA allosteric (dimerisation) domain
PhaeoP97_02604	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP97_02604	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
PhaeoP97_02611	SM00855	Phosphoglycerate mutase family
PhaeoP97_02613	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02622	SM00357	Cold shock protein domain
PhaeoP97_02631	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02636	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02650	SM00155	Phospholipase D. Active site motifs.
PhaeoP97_02653	SM00448	cheY-homologous receiver domain
PhaeoP97_02664	SM01230	PhaeoP97_02664
PhaeoP97_02670	SM00448	cheY-homologous receiver domain
PhaeoP97_02671	SM00387	Histidine kinase-like ATPases
PhaeoP97_02673	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP97_02673	SM00387	Histidine kinase-like ATPases
PhaeoP97_02673	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_02674	SM00448	cheY-homologous receiver domain
PhaeoP97_02685	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
PhaeoP97_02687	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_02687	SM00895	PhaeoP97_02687
PhaeoP97_02693	SM00344	helix_turn_helix ASNC type
PhaeoP97_02694	SM00344	helix_turn_helix ASNC type
PhaeoP97_02700	SM00905	Dihydroneopterin aldolase
PhaeoP97_02712	SM00903	Flavin reductase like domain
PhaeoP97_02719	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
PhaeoP97_02733	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
PhaeoP97_02733	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
PhaeoP97_02733	SM00493	PhaeoP97_02733
PhaeoP97_02734	SM00882	Coenzyme A transferase
PhaeoP97_02735	SM00882	Coenzyme A transferase
PhaeoP97_02740	SM00858	PhaeoP97_02740
PhaeoP97_02747	SM00028	Tetratricopeptide repeats
PhaeoP97_02748	SM00028	Tetratricopeptide repeats
PhaeoP97_02751	SM00487	DEAD-like helicases superfamily
PhaeoP97_02751	SM00490	helicase superfamily c-terminal domain
PhaeoP97_02755	SM00830	Chorismate mutase type II
PhaeoP97_02758	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02768	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02770	SM00278	Helix-hairpin-helix DNA-binding motif class 1
PhaeoP97_02777	SM00487	DEAD-like helicases superfamily
PhaeoP97_02777	SM00490	helicase superfamily c-terminal domain
PhaeoP97_02798	SM01230	PhaeoP97_02798
PhaeoP97_02799	SM00346	helix_turn_helix isocitrate lyase regulation
PhaeoP97_02802	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
PhaeoP97_02819	SM00822	PhaeoP97_02819
PhaeoP97_02819	SM00823	Phosphopantetheine attachment site
PhaeoP97_02819	SM00824	Thioesterase
PhaeoP97_02819	SM00825	Beta-ketoacyl synthase
PhaeoP97_02819	SM00826	PhaeoP97_02819
PhaeoP97_02819	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
PhaeoP97_02821	SM00823	Phosphopantetheine attachment site
PhaeoP97_02834	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02835	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02842	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP97_02842	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP97_02846	SM01130	PhaeoP97_02846
PhaeoP97_02847	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_02847	SM00895	PhaeoP97_02847
PhaeoP97_02869	SM00411	bacterial (prokaryotic) histone like domain
PhaeoP97_02870	SM00316	Ribosomal protein S1-like RNA-binding domain
PhaeoP97_02879	SM01091	Transporter associated domain
PhaeoP97_02884	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP97_02890	SM00825	Beta-ketoacyl synthase
PhaeoP97_02900	SM00998	Adenylosuccinate lyase C-terminus
PhaeoP97_02901	SM00829	Enoylreductase
PhaeoP97_02902	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
PhaeoP97_02903	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP97_02905	SM00344	helix_turn_helix ASNC type
PhaeoP97_02910	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02919	SM00855	Phosphoglycerate mutase family
PhaeoP97_02925	SM00072	Guanylate kinase homologues.
PhaeoP97_02926	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02927	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02933	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_02933	SM00866	PhaeoP97_02933
PhaeoP97_02938	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02956	SM00932	Scaffold protein Nfu/NifU N terminal
PhaeoP97_02960	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02966	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_02968	SM00421	helix_turn_helix, Lux Regulon
PhaeoP97_02969	SM00829	Enoylreductase
PhaeoP97_02970	SM00563	Phosphate acyltransferases
PhaeoP97_02972	SM00528	Domain in histone-like proteins of HNS family
PhaeoP97_02995	SM00881	CoA binding domain
PhaeoP97_02996	SM00861	Transketolase, pyrimidine binding domain
PhaeoP97_03004	SM00563	Phosphate acyltransferases
PhaeoP97_03006	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03015	SM00052	Putative diguanylate phosphodiesterase
PhaeoP97_03017	SM00822	PhaeoP97_03017
PhaeoP97_03026	SM00028	Tetratricopeptide repeats
PhaeoP97_03028	SM00422	helix_turn_helix, mercury resistance
PhaeoP97_03033	SM00852	Probable molybdopterin binding domain
PhaeoP97_03044	SM00849	Metallo-beta-lactamase superfamily
PhaeoP97_03052	SM00852	Probable molybdopterin binding domain
PhaeoP97_03053	SM00986	Uracil DNA glycosylase superfamily
PhaeoP97_03053	SM00987	UreE urease accessory protein, C-terminal domain 
PhaeoP97_03058	SM01207	PhaeoP97_03058
PhaeoP97_03071	SM00278	Helix-hairpin-helix DNA-binding motif class 1
PhaeoP97_03071	SM00465	GIY-YIG type nucleases (URI domain)
PhaeoP97_03076	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03079	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_03080	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
PhaeoP97_03080	SM00245	tail specific protease
PhaeoP97_03083	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_03085	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03089	SM00354	helix_turn _helix lactose operon repressor
PhaeoP97_03092	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03092	SM00943	Bifunctional DNA primase/polymerase, N-terminal
PhaeoP97_03109	SM00316	Ribosomal protein S1-like RNA-binding domain
PhaeoP97_03123	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03127	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_03138	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03152	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03152	SM01086	C-terminal, D2-small domain, of ClpB protein
PhaeoP97_03153	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
PhaeoP97_03164	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03170	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03172	SM00387	Histidine kinase-like ATPases
PhaeoP97_03172	SM00448	cheY-homologous receiver domain
PhaeoP97_03173	SM00448	cheY-homologous receiver domain
PhaeoP97_03173	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP97_03175	SM00855	Phosphoglycerate mutase family
PhaeoP97_03177	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
PhaeoP97_03177	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
PhaeoP97_03180	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
PhaeoP97_03182	SM00853	MutL C terminal dimerisation domain
PhaeoP97_03182	SM01340	PhaeoP97_03182
PhaeoP97_03185	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03187	SM01133	PhaeoP97_03187
PhaeoP97_03193	SM00798	AICARFT/IMPCHase bienzyme
PhaeoP97_03193	SM00851	MGS-like domain
PhaeoP97_03204	SM01387	PhaeoP97_03204
PhaeoP97_03206	SM00316	Ribosomal protein S1-like RNA-binding domain
PhaeoP97_03206	SM00322	K homology RNA-binding domain
PhaeoP97_03211	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03222	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_03226	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_03232	SM00992	Hemimethylated DNA-binding protein YccV like
PhaeoP97_03234	SM00464	Found in ATP-dependent protease La (LON)
PhaeoP97_03239	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03239	SM00843	PhaeoP97_03239
PhaeoP97_03243	SM00448	cheY-homologous receiver domain
PhaeoP97_03243	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP97_03256	SM00822	PhaeoP97_03256
PhaeoP97_03264	SM00478	endonuclease III
PhaeoP97_03266	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
PhaeoP97_03272	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
PhaeoP97_03274	SM00861	Transketolase, pyrimidine binding domain
PhaeoP97_03276	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03277	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03286	SM00988	UreE urease accessory protein, N-terminal domain
PhaeoP97_03295	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP97_03303	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03310	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_03313	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_03314	SM00448	cheY-homologous receiver domain
PhaeoP97_03314	SM00862	Transcriptional regulatory protein, C terminal
PhaeoP97_03318	SM00861	Transketolase, pyrimidine binding domain
PhaeoP97_03322	SM00881	CoA binding domain
PhaeoP97_03324	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_03327	SM00411	bacterial (prokaryotic) histone like domain
PhaeoP97_03344	SM00474	3'-5' exonuclease
PhaeoP97_03348	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03363	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03370	SM00858	PhaeoP97_03370
PhaeoP97_03404	SM00996	S-adenosyl-L-homocysteine hydrolase
PhaeoP97_03404	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
PhaeoP97_03407	SM00448	cheY-homologous receiver domain
PhaeoP97_03409	SM00387	Histidine kinase-like ATPases
PhaeoP97_03409	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_03422	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03422	SM01086	C-terminal, D2-small domain, of ClpB protein
PhaeoP97_03424	SM00463	Small MutS-related domain
PhaeoP97_03425	SM00925	MltA specific insert domain
PhaeoP97_03426	SM00978	PhaeoP97_03426
PhaeoP97_03429	SM00479	PhaeoP97_03429
PhaeoP97_03435	SM00357	Cold shock protein domain
PhaeoP97_03435	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03435	SM00959	Rho termination factor, N-terminal domain
PhaeoP97_03437	SM01228	PhaeoP97_03437
PhaeoP97_03440	SM00470	ParB-like nuclease domain
PhaeoP97_03442	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP97_03447	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
PhaeoP97_03447	SM00534	ATPase domain of DNA mismatch repair MUTS family
PhaeoP97_03448	SM00919	Malic enzyme, NAD binding domain
PhaeoP97_03448	SM01274	PhaeoP97_03448
PhaeoP97_03459	SM00331	Sigma factor PP2C-like phosphatases
PhaeoP97_03459	SM00448	cheY-homologous receiver domain
PhaeoP97_03465	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03466	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03479	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_03484	SM00316	Ribosomal protein S1-like RNA-binding domain
PhaeoP97_03484	SM00322	K homology RNA-binding domain
PhaeoP97_03491	SM00957	SecA DEAD-like domain
PhaeoP97_03491	SM00958	SecA preprotein cross-linking domain
PhaeoP97_03495	SM00271	DnaJ molecular chaperone homology domain
PhaeoP97_03506	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03508	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_03508	SM00895	PhaeoP97_03508
PhaeoP97_03510	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03515	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_03518	SM00829	Enoylreductase
PhaeoP97_03525	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP97_03532	SM00235	Zinc-dependent metalloprotease
PhaeoP97_03536	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_03536	SM00895	PhaeoP97_03536
PhaeoP97_03543	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_03543	SM00419	helix_turn_helix, cAMP Regulatory protein
PhaeoP97_03543	SM00866	PhaeoP97_03543
PhaeoP97_03545	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP97_03545	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
PhaeoP97_03549	SM00316	Ribosomal protein S1-like RNA-binding domain
PhaeoP97_03549	SM00955	PhaeoP97_03549
PhaeoP97_03555	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
PhaeoP97_03555	SM01232	PhaeoP97_03555
PhaeoP97_03560	SM00470	ParB-like nuclease domain
PhaeoP97_03574	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP97_03574	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP97_03577	SM00344	helix_turn_helix ASNC type
PhaeoP97_03581	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
PhaeoP97_03586	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_03588	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP97_03588	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP97_03599	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03600	SM00422	helix_turn_helix, mercury resistance
PhaeoP97_03608	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP97_03609	SM00986	Uracil DNA glycosylase superfamily
PhaeoP97_03609	SM00987	UreE urease accessory protein, C-terminal domain 
PhaeoP97_03623	SM00331	Sigma factor PP2C-like phosphatases
PhaeoP97_03624	SM00387	Histidine kinase-like ATPases
PhaeoP97_03624	SM00911	HWE histidine kinase
PhaeoP97_03627	SM00344	helix_turn_helix ASNC type
PhaeoP97_03640	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03650	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03651	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03664	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03665	SM00255	Toll - interleukin 1 - resistance
PhaeoP97_03678	SM00357	Cold shock protein domain
PhaeoP97_03684	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_03692	SM00354	helix_turn _helix lactose operon repressor
PhaeoP97_03701	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_03716	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_03727	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03729	SM00835	Cupin
PhaeoP97_03730	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_03735	SM00448	cheY-homologous receiver domain
PhaeoP97_03736	SM00138	Methyltransferase, chemotaxis proteins 
PhaeoP97_03737	SM00260	Two component signalling adaptor domain
PhaeoP97_03738	SM00073	Histidine Phosphotransfer domain
PhaeoP97_03738	SM00260	Two component signalling adaptor domain
PhaeoP97_03738	SM00387	Histidine kinase-like ATPases
PhaeoP97_03738	SM01231	PhaeoP97_03738
PhaeoP97_03739	SM00448	cheY-homologous receiver domain
PhaeoP97_03741	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
PhaeoP97_03741	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
PhaeoP97_03746	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03750	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03752	SM00387	Histidine kinase-like ATPases
PhaeoP97_03752	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_03752	SM00448	cheY-homologous receiver domain
PhaeoP97_03754	SM00450	Rhodanese Homology Domain
PhaeoP97_03756	SM00984	UDP binding domain
PhaeoP97_03761	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03762	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP97_03766	SM00470	ParB-like nuclease domain
PhaeoP97_03776	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_03794	SM00822	PhaeoP97_03794
PhaeoP97_03798	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03806	SM01130	PhaeoP97_03806
PhaeoP97_03816	SM00895	PhaeoP97_03816
PhaeoP97_03830	SM00327	von Willebrand factor (vWF) type A domain
PhaeoP97_03835	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP97_03835	SM00419	helix_turn_helix, cAMP Regulatory protein
PhaeoP97_03838	SM00900	PhaeoP97_03838
PhaeoP97_03840	SM00710	Parallel beta-helix repeats
PhaeoP97_03840	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
PhaeoP97_03841	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03852	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03855	SM00861	Transketolase, pyrimidine binding domain
PhaeoP97_03856	SM00345	helix_turn_helix gluconate operon transcriptional repressor
PhaeoP97_03856	SM00895	PhaeoP97_03856
PhaeoP97_03857	SM00822	PhaeoP97_03857
PhaeoP97_03868	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03884	SM00347	helix_turn_helix multiple antibiotic resistance protein
PhaeoP97_03890	SM00346	helix_turn_helix isocitrate lyase regulation
PhaeoP97_03892	SM00849	Metallo-beta-lactamase superfamily
PhaeoP97_03896	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03902	SM00470	ParB-like nuclease domain
PhaeoP97_03904	SM00470	ParB-like nuclease domain
PhaeoP97_03909	SM00528	Domain in histone-like proteins of HNS family
PhaeoP97_03921	SM00953	PhaeoP97_03921
PhaeoP97_03926	SM00773	Proposed nucleic acid binding domain
PhaeoP97_03934	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_03944	SM00487	DEAD-like helicases superfamily
PhaeoP97_03944	SM00490	helicase superfamily c-terminal domain
PhaeoP97_03966	SM00460	Transglutaminase/protease-like homologues
PhaeoP97_03970	SM00460	Transglutaminase/protease-like homologues
PhaeoP97_03981	SM00100	Cyclic nucleotide-monophosphate binding domain
PhaeoP97_03983	SM00883	Chaperonin 10 Kd subunit
PhaeoP97_03987	SM00857	Resolvase, N terminal domain
PhaeoP97_03990	SM00470	ParB-like nuclease domain
PhaeoP97_03991	SM00984	UDP binding domain
PhaeoP97_03996	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_04004	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_04024	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_04026	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP97_04026	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
PhaeoP97_04027	SM00823	Phosphopantetheine attachment site
PhaeoP97_04036	SM00421	helix_turn_helix, Lux Regulon
PhaeoP97_04037	SM00421	helix_turn_helix, Lux Regulon
PhaeoP97_04040	SM00382	ATPases associated with a variety of cellular activities
PhaeoP97_04044	SM00470	ParB-like nuclease domain
PhaeoP97_04046	SM00062	Bacterial periplasmic substrate-binding proteins
PhaeoP97_04046	SM00387	Histidine kinase-like ATPases
PhaeoP97_04046	SM00388	His Kinase A (phosphoacceptor) domain
PhaeoP97_04049	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
PhaeoP97_04054	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_04062	SM00859	Semialdehyde dehydrogenase, NAD binding domain
PhaeoP97_04064	SM00342	helix_turn_helix, arabinose operon control protein
PhaeoP97_04069	SM00729	Elongator protein 3, MiaB family, Radical SAM
PhaeoP97_04071	SM00530	Helix-turn-helix XRE-family like proteins 
PhaeoP97_04074	SM00342	helix_turn_helix, arabinose operon control protein
