LOCUS KY432927 8315 bp RNA linear VRL 20-NOV-2018 DEFINITION Picornavirales sp. isolate RtCb-PicoV/HeB2014 polyprotein gene, complete cds. ACCESSION KY432927 VERSION KY432927.1 KEYWORDS . SOURCE Picornavirales sp. ORGANISM Picornavirales sp. Viruses; Riboviria; Picornavirales; unclassified Picornavirales. REFERENCE 1 (bases 1 to 8315) AUTHORS Wu,Z., Lu,L., Du,J., Yang,L., Ren,X., Liu,B., Jiang,J., Yang,J., Dong,J., Sun,L., Zhu,Y., Li,Y., Zheng,D., Zhang,C., Su,H., Zheng,Y., Zhou,H., Zhu,G., Li,H., Chmura,A., Yang,F., Daszak,P., Wang,J., Liu,Q. and Jin,Q. TITLE Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases JOURNAL Microbiome 6 (1), 178 (2018) PUBMED 30285857 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 8315) AUTHORS Du,J., Wu,Z., Lu,L. and Jin,Q. TITLE Direct Submission JOURNAL Submitted (09-JAN-2017) Moh Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, 301 Room, 6 Rongjingdongjie, Yizhuang Economic Area, Beijing, Beijing 100176, China COMMENT ##Assembly-Data-START## Assembly Method :: MEGA v. 5.0 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..8315 /organism="Picornavirales sp." /mol_type="genomic RNA" /isolate="RtCb-PicoV/HeB2014" /host="rodent" /db_xref="taxon:1955153" /country="China" CDS 732..8225 /codon_start=1 /product="polyprotein" /protein_id="ATY47695.1" /translation="MLMVTNTDFCVCDYCAKQRELFSTFCFFNTNFTRTESERMASLI NCRGKDSNKEVMKGGKWCALNWCPRKVDQDLTMSFPKASDEAPVKTENTKVSFSTAQA YQLCDNRSLLCCMGSKQMTMQYERRMIGRHTSLSTNATPILKAQQYGASVSKADTGNK HQVANAGGNITQINYYGTDYAAAKTDASTQMDPSKFTKPLTDLALGTALKSPTVEECG YSDRLMQLTAGNSTITTQEAANAIVAYGVWPDYLDGVGEAVDKQTKPGPAVERFYTLD SVDWTTSFPGYYWRLPGCLTNLGMFGQNCAYHFLMKSGFCVHLQINASKFHQGMMMLV AIPEMEFWANAMQGSSDQGQLLEEWFLSYPIHQLPIFPHQFINLRTNNSATLILPYMN SAPAENALTHNYWTVLAIPIVSLQYQAGASTTVPITMSIAPMSSTFSGLRSSVPINQG GVPVHAVPGHGQFLTTLRQSGYPVYPEFEATHGHRIPGEVTNLMELAQIDTFAKPSPA ETASWTFDVSVKTNYPLRTWDMDMNSTFFNASYLGRLCKWFVNYRGSIRLTFTFCGSA MATGKFLIAYTPPGGSQPGTRTEAMLATHIVWDIGLQSSCTFIVPWISQTQYRFPNTT ENVYNYAGFISVFYQTSIVVPPGAPSTCAITVMVGACDDFQVRMPTDNGYFQGIEDQV GKLVNGAITHALESVDMEASKGSQLPDQLAVTTGDAAALTATETGASATTSPGSVMET RSLSTTFSARESDIENFFSKYALIHETSAYYSSNTRSIIRIPLEFSDALTQAAIVTKY RMFTYVRCAYDIVLMVSKVGGTPNGSTVRSGTPMNIRMQCIYCPPGTPNPANIDGARW YMPTTPSVYFNTDDPPASIRIPFVSVCEAYSSFYDGYSNFSNQDEATYGKPPGNYIGQ LNIRPTYWPVNDTTSFDLRLHFMVFARPVGIRVWGPRPIVGINLSVRVASRTKNRIYI VDDDDETADTLMIGAGPGGSDVRIAKQQGPTDDEMDSSDEEMDTMEAYTFDHLSVDQK LWASQLPIFYGPSRGFEFHGIPIRHDRVLIPYHLWEEDLELISHSVNICSIGKIDMNR DYCELIFPSNTFTPVPLCDETSPCNVYIVNKCEMNCVLYSDDTWPQQEVLVSESDWLP EHTQYGLLRIPTHSGPGWCGSPVMCTSGVCGMVTAGVPGTTLATSFHCIDWLWSIEEE QPKVLPPPRKIKNAFKSARFAFIDGMWQEVYTSYGPVEQGPIDWMRGVVADFGSAFGT GAADSALEVVRDLIPNVSTESLSSDIVKTVLSWLVKIICAIVLISKAEDKASTAAAVG VILGVDLAISCPFEWLKNKTLELFHIREAEEQGPTEWVKDFNAFCTAARGLDWLGEKI TKFVEWLRNLFKRESPRRQKFIQQLEMLPEMMEKIDMCIQNRSKYRDCDVMRLVKNMK TLKLGADVYGVERNFATTQIVKYHAKALQLEKTCGKARVEPVAILLHGKPGTGKSLAT NMIGKCITTKMGVGNPYSLPPDPKHFDGYCQQEVVIMDDVAQNPDGEDLKLFCQMVSS TEFQVPMASLEEKGMAFTSKYVLCSTNVQGDLKPPTVAEPAALKRRFFLDLDIIIDPA YSVCGKLDARAALTPCTVGCKTKGKQNFRKCCPMVCGRAIRFQDRQNHNIYTLDEVVT LCVNEHDRRSSCGNLLEALFQGPKPRHCTFCRDPDSCICGALTPRRVMVPVDEWLESD FDKEACKLKTFEEIAAMNGKTLAPLPREVADLLKAIPDERIIKYCADQGWLLPPKIEY DRTRKAVISWIDAFKITALAGVSLVSLSGIIYCIYKCFAMFQGPYSGLPKVTPKRPEV RKAVVQGPEMEFNVKLMNSSLFNVETWKGPFTGLGLYDTWILLPTHSKPELKIKVEGI EFNVVDCVELENKLGPLELVAVKIDRPVKFRDIRKYFVDSFSPAHGCNLLVNNSKFPR MFCPVGSVVSYGRLLLSGKYVQNTCMYRYPTKSGQCGGIVTTKDNKIIALHIGGDGLN GYGAILRKKDFDALDKPTEVQGEIVKSGPSTEKPINVSSRTSLYPSVFYDVFEGKKEP AALHPKDKRLEVDLNQAMFGKYKKNEEVQMCEELELAVEHYVSQIKPLMPDNVTEPLP LEDVVYGIENLEGLDLNTSAGFPYVVLGQKKKDFIPERGESLSKLQQALDLHGFDQPY VTYLKDELRPIEKVRMGKTRLIECSSMNDTIRMKTALGRLFQVFHSNPGTATGSAVGC NPDVHWSKFYAEMGDNPLLAFDYSNYDASLHPVWFEGLKMVLKRLGFHVDGIINHVVN SRHLYRDIEYFVEGGMPSGCSGTSVFNSIINNLIIRTLVLRVYKGIDLDSLKIIAYGD DVIASYPFPLDAALLAEEGKVFGLTMTPADKSETFNEVTWETVTFLKRRFVPDKAFPF LVHPVFPMSEIHESLRWTRNALHTQEHVQSLCYLAWHTGKEEYEKLLDQIRSVPVGRA LFLPSYEVLYRQWLELF" ORIGIN 1 tttgaaaggg ccctggatat aatagggtta aacccctatt atatccagga attgccaacc 61 cataatccat tgtccatcaa tgttttatgg gggggaccct ttctcccctc cccctccaaa 121 taccttttac ccctctgtaa ccaagagtgt gcaaaatcta tttactagcc cagaattgcg 181 gcttctgggg aggtttattc ctcatgccta acaagatgtt acgcaaactc cgggctacgg 241 ccctgggctt ttgccctaaa gatttagaag tttacactat cgtccaacag gaggacaaca 301 aaccagttgt tctaaggaca agcacttctg tttccccggt gagactggat agactgtacc 361 cacggttgaa actggttgat ccgttacccg actcactact tcgagaagat tagtaggaaa 421 ctgtgaaact gattccattg atccggatac tttccccgta tccagaaact actgatgagg 481 gttgacttcc cgactacggc gacgtagtgt catccctgcg ctggcagtag gcctctttga 541 ggatggaaga tgtggatcgg taaccgaagg tcctattgag ctagtgttta tacctccggc 601 ctcctgaatg cggctaatcc taacccatga tctagtgctc acaaaccagt gagtagctag 661 tcgtaacgcg taagtcgtgg gcggaaccga ctactttgga gtgaccgtgt ttcctatttt 721 acttttgttt gatgcttatg gtgacaaata cggatttctg tgtttgtgac tattgtgcta 781 aacaaagaga attgttttca actttctgct tttttaacac gaattttact agaacagaat 841 cagagagaat ggccagtctt attaactgcc gtggtaagga ttctaataaa gaagtgatga 901 agggcggaaa gtggtgtgcc cttaactggt gcccaagaaa agtagatcaa gacctgacaa 961 tgtcatttcc aaaggcatct gatgaagccc cagttaaaac agaaaacacc aaggttagct 1021 tttccactgc tcaagcatat caactttgtg ataataggtc actgttgtgt tgtatgggct 1081 ctaaacaaat gaccatgcag tatgaaagaa ggatgattgg acgccatacc agcctgtcaa 1141 caaatgctac cccaatattg aaggctcagc agtatggcgc ttccgtctca aaagcagaca 1201 caggaaacaa gcatcaggtt gccaatgctg gtggcaatat cacccaaata aactattatg 1261 ggactgatta tgctgccgct aagactgatg cgtctactca gatggatcca tccaaattta 1321 ccaagccttt gactgacttg gccctgggaa ctgctcttaa atcacccact gtagaggaat 1381 gtggatattc cgatagactt atgcagttga cagcagggaa ttccacaatc acgacccagg 1441 aggctgccaa tgcgatagtt gcatatggtg tatggccaga ttacctagat ggtgtgggag 1501 aggctgttga taagcaaact aaacctggac cagcagtaga gaggttttat actctcgatt 1561 cagttgactg gacaacatcc ttcccgggat attactggag acttccaggg tgcttgacaa 1621 atttaggcat gtttgggcaa aattgtgcct accatttttt gatgaaatca gggttttgtg 1681 ttcatttgca gataaatgct tccaaatttc accagggtat gatgatgctt gttgccatcc 1741 ctgaaatgga gttttgggct aatgcaatgc aaggttcttc agatcaaggc caacttttgg 1801 aagaatggtt tttgagttat cccatacatc agctacctat atttcctcat cagtttataa 1861 atttgaggac aaataatagt gccaccttga tacttccata catgaattct gccccagcag 1921 aaaatgctct gacccataat tattggacag tgctagctat tcctatagta tcattacaat 1981 atcaggccgg tgcatctaca acagttccca ttacaatgag catagcacct atgagttcaa 2041 cctttagtgg ccttcgttct agcgtgccca ttaatcaggg tggtgttcct gtacatgccg 2101 taccaggaca tggccagttt ttgaccacac ttagacaatc gggttaccca gtttacccag 2161 agtttgaagc aacccatgga cataggattc caggtgaagt tactaacctt atggaattag 2221 cgcaaattga cacctttgct aagcccagtc ctgccgagac agcttcttgg acctttgatg 2281 tgagtgtgaa aacaaattac ccattaagaa catgggatat ggatatgaat tcaacatttt 2341 ttaatgcatc ctacttggga cgattgtgta agtggtttgt gaattataga ggttctatta 2401 ggcttacatt tacattttgt ggatctgcta tggccacggg taagtttctc attgcatata 2461 caccacctgg cggatcccaa ccgggcacca ggactgaagc tatgcttgct actcatatag 2521 tgtgggatat aggcttgcaa tcttcctgca cttttattgt accttggata agccaaacac 2581 aatataggtt tcctaataca actgagaatg tttataatta tgcagggttt atttctgtgt 2641 tttatcaaac cagtatagtt gttccaccag gagccccttc aacatgtgct ataacggtta 2701 tggttggagc ctgtgatgat tttcaggtta gaatgcccac agataatggc tatttccaag 2761 gtattgaaga tcaggttggc aaattggtaa atggagccat tacacatgcc ctagagagtg 2821 ttgatatgga agcttcaaaa ggatcccaat tgccggacca attggctgtt acaacaggag 2881 atgctgcagc acttactgca acggaaactg gtgcaagtgc aaccacctct ccaggctctg 2941 taatggaaac taggtctctt tcaaccacct ttagtgccag ggagagcgat attgaaaatt 3001 tcttttcaaa gtatgctttg atacatgaaa catctgcata ttattcttcc aatactagat 3061 ctataattag gataccccta gaattttctg atgcattgac ccaggccgct attgtgacta 3121 agtatagaat gtttacttat gtgagatgtg cttatgacat tgttttgatg gttagcaaag 3181 ttggtggaac gcccaatggc tccactgtta ggtcagggac cccaatgaat atcagaatgc 3241 agtgtatata ttgcccccca ggaaccccca atcccgctaa tattgatggt gctagatggt 3301 acatgcccac cactcccagt gtgtatttta atacagatga tcccccagct agtattagaa 3361 ttccttttgt ttcagtttgt gaagcttatt catcatttta tgatggatac agtaattttt 3421 ccaaccagga tgaggctacc tacggaaaac caccaggcaa ttacattggc cagctaaata 3481 taagacccac atattggcca gtaaatgata ctacctcatt tgatttgaga ctgcacttta 3541 tggtgtttgc cagacctgtt ggtatccgtg tgtggggccc tcgccccata gtggggatta 3601 atttatctgt gagggttgcc agtcggacca aaaatcgcat ttatattgtg gatgatgatg 3661 atgagactgc agacaccctt atgattgggg caggtccagg tggatcagat gtgcggattg 3721 ctaaacaaca gggtcccact gatgatgaga tggattccag tgatgaagag atggatacta 3781 tggaggctta cacttttgat cacctgagtg tagaccagaa actttgggct tcccagcttc 3841 ctatatttta tggacctagt agaggttttg aatttcatgg gattcccata agacatgata 3901 gggtgcttat tccataccat ttgtgggaag aagatcttga attaatttca catagtgtaa 3961 atatttgtag tataggtaaa atagatatga atagagatta ttgtgagttg atatttcctt 4021 ctaatacctt tactccagtt cccttgtgtg atgagacttc cccatgcaat gtatatattg 4081 taaataagtg tgaaatgaat tgtgtgttat attctgatga tacttggcct caacaggagg 4141 tgttagttag tgaaagtgac tggcttccag aacatacaca atatggattg ctgagaattc 4201 ccacccattc aggtcctgga tggtgtggat caccagtgat gtgcactagt ggagtttgtg 4261 gaatggtcac agctggtgta ccaggtacta ctcttgcaac atcgtttcac tgcatcgatt 4321 ggttgtggtc aatagaagaa gaacaaccca aggtgcttcc acctccccgt aaaattaaga 4381 atgcttttaa aagtgcccgc tttgctttta ttgatggtat gtggcaagaa gtttacacat 4441 catatgggcc tgtagaacaa ggtcctattg attggatgag gggtgttgtg gctgatttcg 4501 gttctgcctt tggaactgga gcagctgata gtgctcttga ggttgtgaga gacttgattc 4561 ccaatgtttc cactgaatct ctttcttctg acattgttaa aactgttctt tcctggcttg 4621 ttaagataat ttgcgctata gttcttattt ccaaagccga agataaagct tcaacagcgg 4681 ctgctgttgg ggttattctt ggggttgacc ttgccatttc ctgtcccttt gagtggttga 4741 agaataaaac cttggaatta tttcatataa gagaagctga ggaacaagga cccactgaat 4801 gggttaagga ttttaatgct ttttgtactg ctgcccgtgg tttggattgg ctaggtgaga 4861 agattactaa atttgttgaa tggctacgca atttgtttaa aagagagagt cccagaaggc 4921 agaaatttat tcaacaattg gagatgcttc cagagatgat ggaaaaaata gatatgtgca 4981 ttcagaatag atccaaatac agagactgtg atgtgatgcg ccttgtcaaa aacatgaaaa 5041 ccttaaaact tggtgcggac gtatatggcg tagagcgaaa ttttgcaaca actcaaattg 5101 taaagtatca tgctaaggcc ttgcaattgg aaaagacatg tggaaaggcc agagtagaac 5161 ccgtagctat actacttcat ggtaagccag gtacagggaa aagcttagct actaatatga 5221 ttggaaagtg tataacaacc aagatgggtg taggaaatcc atatagcttg ccaccagatc 5281 ctaagcattt tgatggatat tgtcaacagg aagtagtgat aatggatgat gttgcccaga 5341 atcctgatgg tgaggattta aaactttttt gtcaaatggt ttccagcaca gaatttcaag 5401 taccaatggc cagccttgag gaaaaaggga tggccttcac ctcaaagtat gtactttgct 5461 ccactaatgt acagggagat ttgaaaccac ccacagttgc tgaaccagct gccttaaaga 5521 gaagattctt tttggatttg gacattataa ttgaccctgc ctacagtgtt tgtggaaagt 5581 tagacgccag agcagcactg actccatgca ctgtggggtg caaaacaaaa gggaaacaga 5641 attttagaaa atgttgtcca atggtttgtg gtagagcaat tagatttcag gataggcaaa 5701 atcataacat ttacaccctt gatgaagttg ttaccctttg tgtgaatgaa catgatagaa 5761 ggtcatcatg tggtaattta cttgaagcgc tctttcaggg cccaaagcct cgacattgca 5821 ccttttgtag agacccagat tcgtgtattt gcggtgcgct tactcccagg cgtgtgatgg 5881 ttcctgttga tgaatggctt gagagtgatt ttgacaaaga ggcatgcaag ctaaagacct 5941 tcgaggagat agccgcaatg aatggaaaga cacttgctcc ccttcctagg gaagttgcag 6001 atttgctgaa ggcaattcca gatgagcgca ttattaagta ttgtgccgat caaggctggc 6061 ttcttccccc aaaaatagag tatgatagaa ctagaaaagc agttatttca tggattgatg 6121 cctttaagat aacagccctt gcaggtgtgt ctcttgtttc cttgagtggg ataatttatt 6181 gcatatataa gtgctttgca atgtttcaag gaccatattc aggtttgccc aaagtgacac 6241 caaagagacc agaggttaga aaggcagtgg tccaaggccc agaaatggaa tttaatgtta 6301 agttaatgaa ttcctccctt tttaatgttg agacatggaa aggacccttt accggtcttg 6361 gactttatga cacttggatt cttcttccta cccactcaaa acctgagctt aagattaaag 6421 ttgagggtat agagtttaat gttgtagatt gtgtggaatt agaaaataag ttagggccat 6481 tagaacttgt agctgttaag atagatagac cagttaagtt tagagatatt agaaaatatt 6541 ttgtagatag ttttagccca gcccacgggt gcaatttgct tgtaaataat agtaagtttc 6601 ctaggatgtt ttgtcccgtt gggtctgtag ttagttatgg taggctttta cttagtggta 6661 agtatgttca aaatacttgt atgtataggt atcctactaa gtcaggtcag tgtggaggga 6721 ttgtgacaac taaagataat aaaataattg ccctccatat tggtggtgat ggcctcaatg 6781 gttatggggc cattttgagg aaaaaagatt ttgatgcttt agataagccc actgaagtac 6841 aaggagagat tgtaaagtct ggtccatcca ctgagaagcc cattaatgtt tcctctcgta 6901 cctcccttta tccatctgta ttttatgatg tttttgaagg gaagaaagag cctgctgcct 6961 tgcatccaaa agataagagg cttgaagttg atttaaatca ggcaatgttt gggaagtata 7021 agaaaaatga ggaggttcaa atgtgtgaag aacttgaatt ggctgtggag cattatgttt 7081 cacagattaa acctttgatg cctgataatg ttactgagcc tctcccactt gaggatgttg 7141 tgtatggaat tgagaattta gagggacttg atttaaatac atcagctgga tttccctatg 7201 tggttctcgg acagaagaag aaagatttta ttcctgaaag aggagagagc ttgtccaaac 7261 tccagcaagc tttggattta catggttttg accaacccta tgtgacatat ttgaaggatg 7321 aacttagacc tattgagaaa gtgagaatgg ggaaaacccg cttgattgag tgttcctcaa 7381 tgaatgacac cattcgcatg aaaactgctc ttggtcgcct tttccaggta tttcattcaa 7441 atcctggaac cgcgactggc tcagccgttg gatgtaatcc ggacgtgcat tggagcaagt 7501 tttatgcaga gatgggtgat aaccccctgc ttgcatttga ttattccaat tatgatgctt 7561 ccttgcatcc agtgtggttt gaagggctga agatggtctt gaagagactg ggatttcatg 7621 tggatggaat aattaatcat gtagttaata gtagacactt gtaccgagat attgagtatt 7681 ttgttgaggg tggaatgcct tccgggtgct ccggtactag tgtatttaat agtataataa 7741 ataatttgat tattaggacc ttagtactta gagtttataa gggaatagat ttagatagtt 7801 taaagataat agcttatggg gatgatgtta ttgcatcgta cccttttccc ttggatgcag 7861 ccctacttgc tgaggaagga aaggtttttg gtttgaccat gacacctgca gataaatcgg 7921 aaacctttaa tgaggtcaca tgggaaaccg tcacgtttct taagcgtcgg ttcgttccag 7981 ataaggcttt tccctttctg gtgcatcccg tgtttcctat gagtgagatt catgagagtt 8041 tgcgctggac acgtaatgca ttgcataccc aagaacatgt tcagtccctg tgttatttgg 8101 cttggcacac aggaaaagag gagtatgaga agctcctcga tcagattagg tccgtaccag 8161 ttggtagggc tctttttctt ccctcttatg aagttcttta tagacaatgg cttgaattgt 8221 tttaggctaa ggacctatag ctcggctcta atcatggccg gcccaccggg ctatgggatg 8281 agatttaaat tggattagaa tttaaaaaaa aaaaa //