LOCUS KY432935 7935 bp RNA linear VRL 20-NOV-2018 DEFINITION Picornavirales sp. isolate RtNn-PicoV/HuB2015-3 polyprotein gene, complete cds. ACCESSION KY432935 VERSION KY432935.1 KEYWORDS . SOURCE Picornavirales sp. ORGANISM Picornavirales sp. Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; unclassified Picornavirales. REFERENCE 1 (bases 1 to 7935) AUTHORS Wu,Z., Lu,L., Du,J., Yang,L., Ren,X., Liu,B., Jiang,J., Yang,J., Dong,J., Sun,L., Zhu,Y., Li,Y., Zheng,D., Zhang,C., Su,H., Zheng,Y., Zhou,H., Zhu,G., Li,H., Chmura,A., Yang,F., Daszak,P., Wang,J., Liu,Q. and Jin,Q. TITLE Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases JOURNAL Microbiome 6 (1), 178 (2018) PUBMED 30285857 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7935) AUTHORS Du,J., Wu,Z., Lu,L. and Jin,Q. TITLE Direct Submission JOURNAL Submitted (09-JAN-2017) Moh Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, 301 Room, 6 Rongjingdongjie, Yizhuang Economic Area, Beijing, Beijing 100176, China COMMENT ##Assembly-Data-START## Assembly Method :: MEGA v. 5.0 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7935 /organism="Picornavirales sp." /mol_type="genomic RNA" /isolate="RtNn-PicoV/HuB2015-3" /host="rodent" /db_xref="taxon:1955153" /country="China" CDS 679..7839 /codon_start=1 /product="polyprotein" /protein_id="ATY47703.1" /translation="MAVISDTTIIAFQILSKQGKTRVMWTCVGNDLLGYKMRPRIIAG GSNVTLGTRFRNFGASVSKSDTGNKHQVANAGGNITQINYYGTDYSQAKTDALQTMNP EQFTKPITALMGGPALKSPTVEECGYSDRIVQLTAGNSTITTQEAVDAVVAYAHWPSP STGSGEAIDKLSTPGPAVDRFYTLDSVEWSNSFPGYFWRLPGVLTDLGVFGQNCAYHY LMRSGFCVHLQLNASKFHQGCMMLVAIPEGQYSTSTQTGVLDEAEIAAEFYIQYPIHQ LTVFPHQFVNLRTNNSATLILPYMNSVPAENPITHNYWMVCAIPIVPLQYSQGASTVV PMTLSIAPMHAEFSGLRQAVAVRQGVPTFQIPGSGQFVTTIRNSGFPLYPEFEATHSH FIPGEVTNLMEVMQVDTFCRLGTASFLQLEVGVRTDTALLTFDMDLNSEVFSTTYLAR CCKWFTNYRGSVRLTFTFCGSAMATGKLLLAYTPPGGTAPATRKDAMLGTHMVWDLGL QSSVTFIVPWISQTQYRYPNTGANIYSYSGFVSVWYQTSIVVPPGAPSTCGVTMLCGA CEDFQVRLPTDNAYFQGIGDTLGKVVEHTLNTALQTTEQPATKPAISNGDELTVQTGD APALTASETGASTTTDPSTVMETRSVPVSFSSRESCIENFFSRYAKVKADTTNWGQID TNKSAFIQAIPINFNDIHTQLAIRCKYNMFTYFRCDYDLVIIMENESFEYVTGGSSGS TAANSYPVKFEAAFVPPGGPSLSAFNATAWDLPTLPRVFFTSNGVPASIRIPFMSVAN AYRCWFDGFPNFTQIADNYGQDPGNFIGTLYIRNFINILVPGAESIRYRTHWSILARP VNVRAWGPRPIVSLKSTSRISSQSRHRIYCVDDEEEADRMLLHGAGPFGLDVYQQYGD VDMASDEECMEWYENDSFQIRDAPRHMRKWLNQCPIYEYDGHYYHGVPIAHNLVAFNH HLGLGGLKAIKGPENFWVEHIDPEMDLLILKYPNNSFEPVPLCDCANPKEVWMMNDCE FHVALYAGQGNYVAEAFVDGIEGITLDHVQRNLIRFEVQSREGWCGSPAFCKNGCCGI VTAGAKGVTLVTSFHNVNLFHKMDEDPKPDGSFPYRLQNSIGHRAKRQRGKRFHNLAQ YQGIWDWARNLGNAFGAGVFESAKDEVECLLPKFDTSAISNSATRVVLSWLVKAICAC VLISKAEDKASTAACIGVILGVDFLNSSPFEWLKMQVYNLLGIKTQQGPSDWIKEFNA CCNAARGLDWIGQKISQFVEWLQKLVQKEVPERQAFLERVKKLPELMETIDKICTSRR NFKDSDIEKVIKNMEVLKKGADLYGIERNIATMQILKYYDKVQALKKGLARTRHEPIA VIFRGGPGTGKSLATTLVGKCISQRLKCASPYCLPPDPKHFDGYAQQPVVIMDDVGQN PDGNDLALFCQMVSSTEFVPPMADLQDKGKPFTSEFVLCSTNKADLRPPTIAEPKALE RRFFLDLTINVSNDYKDRFGRLKAAEALKQNPSATQMFKKSCPMVDGSAVRFQDKSMN AYSLDEIVHLILEERKKRAGCVDAIEALFQGPVQGHVCVGECVHRPILAQPVDECAWE SLFKQDWDDAACELKTIDEQIEEGMISEKPTPKEILDLVAAVPDPKVISYCLNKGWLR EEKQYQIVRKQVWNWVDVLSSTLAGLSLVGAVALIIWQLFRVFKSKDEQGPYSGMPKK NVQQPQLRKAVVQGPNMEFEMRLFKSSLFDVETQEGHYSGLGVYDEWLLLPRHARPSE SVKVEGVEFSVIDSVELVCGQGDLELVAVKINRPVKFRDIRKYFPDSFVSEKNAVLLV NNENFRNMFCPVGVVTRYGRLNLSGFSVQNTCMYRFPTRNGQCGGIVVAGGKILAMHI GGDGLNGYGAILKSTYFNFDRSDVKVQGEIIAKRPASKTVNVSTRTSLHPSVFFDVFP GTKEPAALSERDKRLETSLNEAMFSKYKGNVVIEDCPELDIAVEHYVSQLRTVLPADV TDPLSLEEVVYGIDHLEGLDLNTSAGYPYVMMGVRKRDLVPERGQPLTKLQQALDLHG TNLPFVTYLKDELRPAEKVRAGKTRLIECSSVNDTIWMKRVLGRLFQAFHQNPGVVTG SAVGCNPDIHWSKFYAELGDNPLLAFDYSNYDASLGPFWFGALKKVLKQIGFDSDKLI DYICYSKHIYRDIEYDVVGGMPSGCSGTSIFNSIINNLIIRTLVLRCYKGIDLDSLKI IAYGDDVICSYPWPIDAQQLANEGLKFGLTMTPADKSSSFNEVTWQNVTFLKRRFVPD EVFPFLVHPVFPMEEIYESIRWCRSAAHTQEHVSSLCYLAWHNGEEAYNSFVNRIRSV KIGQALFLPSYLVLRRAWLDSF" ORIGIN 1 tgaaccgtta cgcaccactc agttggtgtt tggtggcacc aatgatggaa caaaaggcta 61 caccacttgg gctacggccc gcgccacctt gtggcgcaaa gacattagaa gaatagcata 121 ccgcccacta gggccctgca gccagcaggg taacgggcaa gcacttctgt ctccccggta 181 gaacggtata ggctgtaccc acggccgaaa actgaactat cgttacccga ctccgtactt 241 cgcaaagctt agtaggaaac tggaaagttc gagttattga cccggagtgt tccccccact 301 ccagaaacgc gtgatgaggg ttgccacccc gaccatggcg acatggtggg catccctgcg 361 ctggcacgcg gcctctaaga ggataactcg ctcctactgg taaccgaaga gccccgtgag 421 ctacggttta ttcctccgcc tccctgaatg cggctaatcc taacccatga gcagttgcca 481 tagatccata tggtggactg tcgtaacgcg taagttgtgg gcggaaccga ctactttggg 541 atggcgtgtt tccttgtttt ctccatttgt tgttgtatgg tgacaagtta tagatctcga 601 tctatagcgt ttcttgagag atttccaaac atttattcaa gtcgtacaat tcttgtgttt 661 aagcagtaca gtgtaaggat ggcagttatt agtgatacca ccataattgc ttttcagatt 721 ttgtccaaac aaggtaagac ccgagttatg tggacgtgtg tagggaatga cctccttgga 781 tacaagatga ggcctaggat tattgcaggc gggtcaaatg ttacactcgg aacccgcttc 841 cgtaattttg gtgcctcagt ttccaagtct gacacaggaa ataaacacca ggtggcaaat 901 gccggaggaa atattacaca gataaattat tatggaacag actactccca ggccaagacc 961 gatgcccttc agaccatgaa tccagagcag ttcacgaagc ccatcacagc cttgatgggc 1021 gggcctgccc tcaagagtcc cactgtggag gagtgcggct attcagacag gattgtgcag 1081 ctgactgcgg gtaattcaac cataacaacg caggaggctg ttgatgcagt tgtggcctat 1141 gcacattggc catcaccttc tacaggatca ggagaggcca ttgataagct ttcaacacca 1201 ggaccagcag tagatagatt ttatactctt gatagtgtgg agtggagcaa cagttttcct 1261 ggctactttt ggaggttgcc aggggttctg acggacttgg gtgtttttgg ccagaattgt 1321 gcataccatt atttgatgag gagtggtttt tgtgtccacc tccagttgaa tgcatctaaa 1381 ttccaccaag ggtgcatgat gctggtggct attccagagg ggcaatactc cacctcgact 1441 cagactggtg tattggatga agcggagatt gccgctgaat tttatattca gtatccaatt 1501 caccagctga cagttttccc ccatcagttt gttaatttga ggacgaataa ttcagcaacc 1561 ctgattttgc cttacatgaa ttcagttcca gcagaaaatc cgataacaca taattactgg 1621 atggtttgcg ctattcctat agtgccccta cagtactccc agggtgcatc cacagtggtt 1681 ccaatgacac tttctattgc accaatgcat gcagagttct ctggccttag acaagctgtg 1741 gcagtccggc aaggggtacc caccttccag attcctggct caggccagtt tgtgaccacc 1801 attagaaatt cagggtttcc actttaccca gagtttgagg caacgcactc acacttcatt 1861 cctggagagg ttacaaattt gatggaagtg atgcaagttg ataccttttg tagacttggt 1921 actgcctcct tcctgcagct ggaggttggg gtgcggactg atactgcact cctaaccttt 1981 gacatggatt tgaattcaga ggttttctcc actacgtacc ttgccagatg ctgtaaatgg 2041 ttcacaaatt acagaggaag tgtacgcctc acattcacct tttgtgggtc tgccatggcc 2101 actgggaaac tgttgctagc ttacaccccc ccaggaggca cagctccagc cactaggaaa 2161 gatgcaatgc taggtaccca catggtatgg gatctggggt tgcagtcctc agtaactttt 2221 atagttccct ggataagcca aacccagtac cggtacccca acaccggtgc taatatctat 2281 tcctattcag gatttgtttc ggtttggtac caaaccagca tcgttgttcc accaggagct 2341 ccctctacgt gtggagtcac catgctttgt ggtgcatgtg aggatttcca ggtacgcctt 2401 ccaacagata atgcttattt ccagggtatt ggggatactc ttggtaaggt tgtggagcac 2461 acactaaata cggcactgca gaccactgaa caacccgcaa caaagccagc tatttctaat 2521 ggagatgaat taacagtgca aacgggtgat gctcctgccc taacagcttc tgagactggg 2581 gcgtccacaa ccacagatcc atccacagtg atggagacta gatcggtgcc cgtatccttt 2641 agctccaggg agtcatgtat agaaaatttc ttttccaggt atgcaaaggt gaaagcagat 2701 accacaaatt ggggacagat tgatacaaat aagtcagcct ttatacaggc gattcccata 2761 aattttaatg atatacatac ccagttagca attaggtgta agtataatat gtttacttat 2821 tttagatgtg attatgattt ggtaattata atggagaatg agagctttga gtatgttaca 2881 gggggctctt cagggtcaac agcagcaaat tcttaccccg tgaaatttga ggccgcattt 2941 gtaccgccag gaggcccaag tttgagcgcc tttaatgcca cagcatggga tctcccaact 3001 ctccctcggg tatttttcac atcaaatgga gttcccgctt ccattaggat cccgtttatg 3061 tcagtggcca atgcctatcg gtgctggttt gatggatttc cgaattttac ccagattgct 3121 gataattatg ggcaggatcc aggtaatttt ataggaacac tttatattag gaactttata 3181 aatatccttg tcccaggagc tgaatccatc aggtatcgaa cgcattggtc tattttggca 3241 cgtccagtaa acgtacgtgc atggggtccc agaccaattg ttagcttgaa atcaacttcc 3301 aggatttctt cccagtcccg ccaccgtata tattgtgtgg acgacgaaga ggaggcagat 3361 cggatgctcc tacatggtgc agggcccttt ggcctggatg tctaccagca gtatggtgat 3421 gtggatatgg catcagatga agagtgtatg gaatggtatg agaatgattc ctttcagata 3481 agggatgccc cacgccatat gagaaaatgg ctcaaccagt gccccatata tgagtatgat 3541 ggccattatt atcatggagt gcccatcgcc cataatttgg tggcctttaa tcaccatctg 3601 ggcttgggtg gtcttaaggc tatcaagggg ccagagaatt tttgggtaga gcatatagat 3661 ccagagatgg atttgctgat tctgaaatat cctaataaca gctttgaacc tgttcccctg 3721 tgtgactgtg ctaatccaaa agaggtgtgg atgatgaatg attgtgagtt tcatgttgcg 3781 ttgtatgctg gtcagggcaa ctatgttgct gaggcttttg ttgatgggat tgaggggata 3841 acccttgatc atgttcagag gaatttgatc aggtttgagg ttcagtccag ggaaggttgg 3901 tgtggatcgc cggccttctg caagaatggg tgttgtggga ttgtgacagc aggagctaag 3961 ggtgtaaccc tagttacatc ctttcacaat gttaatcttt tccataagat ggatgaagat 4021 cccaaaccag atggttcctt tccctataga cttcagaatt ccattggcca tcgtgcaaag 4081 aggcaacggg gtaagcgctt tcataacttg gcccagtacc aaggcatctg ggactgggcc 4141 aggaaccttg ggaatgcctt tggtgctgga gtgtttgagt cagcaaaaga tgaagttgag 4201 tgtcttcttc ctaaatttga tacttctgcc attagtaatt cagctacaag ggtggtattg 4261 tcctggctag ttaaggccat ttgtgcctgt gttttgatat caaaggctga ggacaaagcc 4321 tctactgcag catgcattgg ggttattctc ggggtggatt ttcttaattc atcccctttt 4381 gaatggctca agatgcaggt ttataacctc cttggcatta aaacccaaca gggaccatca 4441 gattggataa aggaatttaa tgcatgctgc aatgctgccc gtggccttga ttggattggt 4501 caaaagattt cccagtttgt tgagtggcta cagaagttgg tccagaaaga agtgccggaa 4561 cgccaggctt ttcttgagcg tgtaaagaaa cttcctgagc ttatggagac cattgataaa 4621 atatgtactt ccaggcggaa ttttaaggac tccgatattg agaaggttat caagaatatg 4681 gaagttttga agaaaggggc tgatttgtat ggcattgaaa gaaatattgc cactatgcag 4741 attttgaagt attatgataa ggtgcaggcc ttaaagaaag gattagcccg aactcgccat 4801 gagcctatag cagttatttt tagaggaggc ccaggaacag gcaagtcttt ggccaccacc 4861 ttggttggca agtgcatatc ccagaggcta aaatgtgcca gcccttattg cctaccacca 4921 gatcccaagc attttgatgg ctatgctcag cagcctgtgg tgataatgga tgatgtggga 4981 caaaatccag atgggaatga tttggctttg ttttgccaga tggtttcctc cacagagttt 5041 gtacctccaa tggctgattt gcaggataag ggaaaaccat ttacatcaga gtttgttttg 5101 tgtagcacca ataaggcaga tctgcggccc cccaccattg cagaaccaaa agccctagaa 5161 agaaggtttt tcttggattt gaccattaat gtttctaatg attataaaga caggtttggg 5221 cggctgaagg ccgcggaagc cctaaagcaa aatccctcag ctacccagat gtttaagaaa 5281 tcgtgcccta tggttgatgg tagtgcggtt aggtttcagg ataagagtat gaatgcatat 5341 agtttggatg agattgtgca tttgattttg gaggagcgga agaagagagc cggatgtgtg 5401 gatgccattg aagccctttt tcaaggccct gtacagggtc atgtgtgtgt gggagagtgt 5461 gtgcataggc cgatattggc acagcctgtg gatgagtgtg catgggaatc cctgtttaag 5521 caggattggg atgatgcagc ttgtgagttg aaaactattg atgagcagat tgaagaaggc 5581 atgattagtg agaagccaac tccaaaggag atattggatt tggttgctgc agtcccagat 5641 cccaaagtga tttcctattg cctgaataag gggtggttga gagaagagaa gcagtatcag 5701 atagttcgga aacaggtttg gaattgggtt gatgttttgt catccacctt ggctggcttg 5761 tccttagtgg gagcagttgc ccttattatt tggcaattgt tcagggtatt taagtcaaag 5821 gatgagcagg ggccatatag tggcatgccc aagaagaatg ttcagcaacc ccagttgcgg 5881 aaggcagtgg tccaggggcc taatatggag tttgagatga gattgtttaa atccagcctg 5941 tttgatgttg agacccagga aggccattat tctgggctcg gtgtgtatga tgagtggctg 6001 ctccttccta gacatgcaag acctagtgag agtgtgaagg ttgagggtgt tgagtttagt 6061 gtgatagata gtgttgagct tgtgtgtggt cagggtgatt tagaattagt agcggttaag 6121 ataaatagac ctgttaagtt cagggatatt agaaaatatt ttcctgatag ttttgttagt 6181 gagaagaatg cagtgttact tgttaataat gaaaatttta gaaatatgtt ttgccctgtt 6241 ggtgttgtta ctagatatgg gcgcctaaat ttgtcaggat ttagtgtgca gaatacatgc 6301 atgtatagat ttccaaccag aaatggtcaa tgtggaggga tagttgtggc tggtggaaag 6361 attttagcca tgcatatagg tggggatggc ttgaatggtt atggagcgat cctaaagtca 6421 acttatttta attttgatcg ctctgatgtg aaggtccagg gtgagataat agccaagaga 6481 ccggcttcca agactgtgaa tgtttccact cgcactagcc tgcaccctag tgtttttttt 6541 gatgtgttcc cgggtacaaa ggaacccgcg gccctgtcgg agagggataa gaggcttgaa 6601 actagtctta acgaggcaat gttttcaaag tacaagggca atgttgttat tgaggattgc 6661 cctgaattag atattgctgt ggagcactat gtatcccagc tccggaccgt gctcccggct 6721 gatgttactg atcccctaag tttggaggag gtagtgtatg gaatagatca tcttgagggg 6781 ttggatttaa atacatcagc tggctaccca tatgtgatga tgggtgtgag aaagcgcgat 6841 ctggtcccag aaagagggca gccattgacc aagttgcagc aggcattgga ccttcatggg 6901 acaaatttgc cctttgttac gtatttgaaa gatgagttaa gaccagcaga gaaagtgagg 6961 gcagggaaga ccagacttat agaatgttct tctgtgaatg ataccatttg gatgaagcgg 7021 gttttgggtc ggttgtttca agccttccat cagaacccag gcgttgtgac aggctccgcg 7081 gttgggtgta atccagatat tcattggagc aagttttatg cagagcttgg tgataatccc 7141 cttttggcct ttgattattc caactatgat gcaagtttgg gacctttttg gtttggagct 7201 ttgaagaagg ttttaaaaca aataggattt gatagtgata agttgataga ttatatttgt 7261 tatagtaagc atatatatag agatatagaa tatgatgtag ttgggggtat gccttctggt 7321 tgcagtggca cttccatttt taattccata attaataatt tgataattag gactttagtg 7381 ttaaggtgtt ataagggtat agatttggat agtttaaaga ttattgctta tggagatgat 7441 gtgatatgct cctacccttg gccaattgat gctcagcagt tggcaaacga gggtttgaaa 7501 tttggcttga ccatgacacc ggctgataag tcgtcctctt ttaatgaagt gacttggcag 7561 aatgttacat ttttgaagcg ccgatttgtt ccagacgagg tttttccttt tttggttcat 7621 ccggtgtttc ccatggagga gatttatgaa agcatacgct ggtgtagatc agcagcccat 7681 actcaggagc atgtgtcctc tctttgctat ttagcatggc ataatgggga ggaagcttat 7741 aatagttttg taaataggat taggagtgtt aagattggtc aggccctgtt tttgcccagt 7801 tatctggtgt tgcgacgggc ttggctagat agtttttagt ttaagataga tattcatatg 7861 tcagtctaat caaggctgag ccactggcat atgtcttagt aatttctagg attaggtaga 7921 aataaaaaaa aaaaa //