locus-tag class description AWJ11_00010 PF00468 Ribosomal protein L34 AWJ11_00015 PF00825 Ribonuclease P AWJ11_00020 PF02096 60Kd inner membrane protein AWJ11_00020 PF14849 YidC periplasmic domain AWJ11_00025 PF10396 GTP-binding protein TrmE N-terminus AWJ11_00025 PF12631 MnmE helical domain AWJ11_00025 PF01926 50S ribosome-binding GTPase AWJ11_00030 PF13932 GidA associated domain AWJ11_00030 PF01134 Glucose inhibited division protein A AWJ11_00035 PF02527 rRNA small subunit methyltransferase G AWJ11_00040 PF13614 AAA domain AWJ11_00045 PF17762 HTH domain found in ParB protein AWJ11_00045 PF02195 ParB-like nuclease domain AWJ11_00055 PF00119 ATP synthase A chain AWJ11_00060 PF00137 ATP synthase subunit C AWJ11_00065 PF00430 ATP synthase B/B' CF(0) AWJ11_00070 PF00213 ATP synthase delta (OSCP) subunit AWJ11_00080 PF00231 ATP synthase AWJ11_00085 PF02874 ATP synthase alpha/beta family, beta-barrel domain AWJ11_00085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AWJ11_00090 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AWJ11_00090 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AWJ11_00095 PF00132 Bacterial transferase hexapeptide (six repeats) AWJ11_00095 PF14602 Hexapeptide repeat of succinyl-transferase AWJ11_00095 PF12804 MobA-like NTP transferase domain AWJ11_00100 PF01380 SIS domain AWJ11_00105 PF13610 DDE domain AWJ11_00125 PF13936 Helix-turn-helix domain AWJ11_00125 PF00665 Integrase core domain AWJ11_00145 PF10609 NUBPL iron-transfer P-loop NTPase AWJ11_00175 PF13936 Helix-turn-helix domain AWJ11_00175 PF00665 Integrase core domain AWJ11_00190 PF00571 CBS domain AWJ11_00190 PF01380 SIS domain AWJ11_00200 PF00891 O-methyltransferase domain AWJ11_00200 PF03364 Polyketide cyclase / dehydrase and lipid transport AWJ11_00215 PF07690 Major Facilitator Superfamily AWJ11_00220 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AWJ11_00220 PF06481 COX Aromatic Rich Motif AWJ11_00225 PF00115 Cytochrome C and Quinol oxidase polypeptide I AWJ11_00230 PF00510 Cytochrome c oxidase subunit III AWJ11_00235 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AWJ11_00240 PF01040 UbiA prenyltransferase family AWJ11_00245 PF07992 Pyridine nucleotide-disulphide oxidoreductase AWJ11_00245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AWJ11_00260 PF00561 alpha/beta hydrolase fold AWJ11_00285 PF13276 HTH-like domain AWJ11_00285 PF00665 Integrase core domain AWJ11_00325 PF03400 IS1 transposase AWJ11_00355 PF00873 AcrB/AcrD/AcrF family AWJ11_00365 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AWJ11_00365 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AWJ11_00370 PF06969 HemN C-terminal domain AWJ11_00370 PF04055 Radical SAM superfamily AWJ11_00375 PF01725 Ham1 family AWJ11_00380 PF00731 AIR carboxylase AWJ11_00385 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AWJ11_00385 PF02222 ATP-grasp domain AWJ11_00395 PF01488 Shikimate / quinate 5-dehydrogenase AWJ11_00395 PF08501 Shikimate dehydrogenase substrate binding domain AWJ11_00395 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AWJ11_00415 PF02622 Uncharacterized ACR, COG1678 AWJ11_00420 PF03652 Holliday junction resolvase AWJ11_00430 PF01168 Alanine racemase, N-terminal domain AWJ11_00435 PF14748 Pyrroline-5-carboxylate reductase dimerisation AWJ11_00435 PF03807 NADP oxidoreductase coenzyme F420-dependent AWJ11_00445 PF03222 Tryptophan/tyrosine permease family AWJ11_00450 PF01208 Uroporphyrinogen decarboxylase (URO-D) AWJ11_00455 PF00390 Malic enzyme, N-terminal domain AWJ11_00455 PF03949 Malic enzyme, NAD binding domain AWJ11_00465 PF00753 Metallo-beta-lactamase superfamily AWJ11_00465 PF16123 Hydroxyacylglutathione hydrolase C-terminus AWJ11_00475 PF00106 short chain dehydrogenase AWJ11_00500 PF01451 Low molecular weight phosphotyrosine protein phosphatase AWJ11_00505 PF10531 SLBB domain AWJ11_00505 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AWJ11_00505 PF02563 Polysaccharide biosynthesis/export protein AWJ11_00510 PF13614 AAA domain AWJ11_00510 PF13807 G-rich domain on putative tyrosine kinase AWJ11_00510 PF02706 Chain length determinant protein AWJ11_00515 PF00483 Nucleotidyl transferase AWJ11_00520 PF00483 Nucleotidyl transferase AWJ11_00525 PF16363 GDP-mannose 4,6 dehydratase AWJ11_00530 PF01467 Cytidylyltransferase-like AWJ11_00540 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AWJ11_00545 PF00535 Glycosyl transferase family 2 AWJ11_00555 PF00534 Glycosyl transferases group 1 AWJ11_00555 PF13439 Glycosyltransferase Family 4 AWJ11_00560 PF00534 Glycosyl transferases group 1 AWJ11_00560 PF13439 Glycosyltransferase Family 4 AWJ11_00565 PF01370 NAD dependent epimerase/dehydratase family AWJ11_00570 PF00483 Nucleotidyl transferase AWJ11_00570 PF01050 Mannose-6-phosphate isomerase AWJ11_00575 PF02397 Bacterial sugar transferase AWJ11_00585 PF13505 Outer membrane protein beta-barrel domain AWJ11_00585 PF00691 OmpA family AWJ11_00590 PF00313 'Cold-shock' DNA-binding domain AWJ11_00595 PF04542 Sigma-70 region 2 AWJ11_00595 PF04545 Sigma-70, region 4 AWJ11_00600 PF13936 Helix-turn-helix domain AWJ11_00600 PF00665 Integrase core domain AWJ11_00605 PF13180 PDZ domain AWJ11_00610 PF00486 Transcriptional regulatory protein, C terminal AWJ11_00610 PF00072 Response regulator receiver domain AWJ11_00615 PF00672 HAMP domain AWJ11_00615 PF00512 His Kinase A (phospho-acceptor) domain AWJ11_00615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AWJ11_00620 PF02325 YGGT family AWJ11_00630 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AWJ11_00630 PF03900 Porphobilinogen deaminase, C-terminal domain AWJ11_00685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AWJ11_00685 PF03466 LysR substrate binding domain AWJ11_00700 PF00580 UvrD/REP helicase N-terminal domain AWJ11_00700 PF13361 UvrD-like helicase C-terminal domain AWJ11_00710 PF13520 Amino acid permease AWJ11_00715 PF11798 IMS family HHH motif AWJ11_00715 PF00817 impB/mucB/samB family AWJ11_00715 PF11799 impB/mucB/samB family C-terminal domain AWJ11_00720 PF00817 impB/mucB/samB family AWJ11_00720 PF11798 IMS family HHH motif AWJ11_00720 PF11799 impB/mucB/samB family C-terminal domain AWJ11_00725 PF00817 impB/mucB/samB family AWJ11_00725 PF11799 impB/mucB/samB family C-terminal domain AWJ11_00725 PF11798 IMS family HHH motif AWJ11_00730 PF00501 AMP-binding enzyme AWJ11_00730 PF13193 AMP-binding enzyme C-terminal domain AWJ11_00745 PF00873 AcrB/AcrD/AcrF family AWJ11_00750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AWJ11_00790 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AWJ11_00800 PF07885 Ion channel AWJ11_00800 PF02254 TrkA-N domain AWJ11_00805 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AWJ11_00805 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AWJ11_00810 PF02556 Preprotein translocase subunit SecB AWJ11_00815 PF00462 Glutaredoxin AWJ11_00835 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AWJ11_00840 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AWJ11_00855 PF00580 UvrD/REP helicase N-terminal domain AWJ11_00855 PF13361 UvrD-like helicase C-terminal domain AWJ11_00870 PF01678 Diaminopimelate epimerase AWJ11_00875 PF01842 ACT domain AWJ11_00875 PF00551 Formyl transferase AWJ11_00905 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AWJ11_00905 PF01243 Pyridoxamine 5'-phosphate oxidase AWJ11_00935 PF02677 Epoxyqueuosine reductase QueH AWJ11_00945 PF01063 Amino-transferase class IV AWJ11_00960 PF01169 Uncharacterized protein family UPF0016 AWJ11_01005 PF01985 CRS1 / YhbY (CRM) domain AWJ11_01015 PF01728 FtsJ-like methyltransferase AWJ11_01020 PF01434 Peptidase family M41 AWJ11_01020 PF17862 AAA+ lid domain AWJ11_01020 PF00004 ATPase family associated with various cellular activities (AAA) AWJ11_01020 PF06480 FtsH Extracellular AWJ11_01025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AWJ11_01025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AWJ11_01025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AWJ11_01025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AWJ11_01030 PF00456 Transketolase, thiamine diphosphate binding domain AWJ11_01030 PF17831 Pyruvate dehydrogenase E1 component middle domain AWJ11_01035 PF02817 e3 binding domain AWJ11_01035 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AWJ11_01035 PF00364 Biotin-requiring enzyme AWJ11_01040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AWJ11_01040 PF07992 Pyridine nucleotide-disulphide oxidoreductase AWJ11_01045 PF02253 Phospholipase A1 AWJ11_01060 PF00118 TCP-1/cpn60 chaperonin family AWJ11_01065 PF00166 Chaperonin 10 Kd subunit AWJ11_01070 PF01220 Dehydroquinase class II AWJ11_01075 PF00364 Biotin-requiring enzyme AWJ11_01080 PF00289 Biotin carboxylase, N-terminal domain AWJ11_01080 PF02785 Biotin carboxylase C-terminal domain AWJ11_01080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AWJ11_01090 PF01207 Dihydrouridine synthase (Dus) AWJ11_01095 PF02954 Bacterial regulatory protein, Fis family AWJ11_01100 PF01808 AICARFT/IMPCHase bienzyme AWJ11_01100 PF02142 MGS-like domain AWJ11_01105 PF02844 Phosphoribosylglycinamide synthetase, N domain AWJ11_01105 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AWJ11_01105 PF02843 Phosphoribosylglycinamide synthetase, C domain AWJ11_01110 PF00557 Metallopeptidase family M24 AWJ11_01110 PF05195 Aminopeptidase P, N-terminal domain AWJ11_01125 PF00486 Transcriptional regulatory protein, C terminal AWJ11_01125 PF00072 Response regulator receiver domain AWJ11_01130 PF13520 Amino acid permease AWJ11_01140 PF04751 Protein of unknown function (DUF615) AWJ11_01150 PF00929 Exonuclease AWJ11_01150 PF08411 Exonuclease C-terminal AWJ11_01155 PF00005 ABC transporter AWJ11_01155 PF09383 NIL domain AWJ11_01160 PF00528 Binding-protein-dependent transport system inner membrane component AWJ11_01165 PF03180 NLPA lipoprotein AWJ11_01180 PF01430 Hsp33 protein AWJ11_01185 PF03060 Nitronate monooxygenase AWJ11_01190 PF09335 SNARE associated Golgi protein AWJ11_01195 PF03471 Transporter associated domain AWJ11_01195 PF00571 CBS domain AWJ11_01195 PF01595 Cyclin M transmembrane N-terminal domain AWJ11_01200 PF02881 SRP54-type protein, helical bundle domain AWJ11_01200 PF02978 Signal peptide binding domain AWJ11_01200 PF00448 SRP54-type protein, GTPase domain AWJ11_01205 PF04403 Paraquat-inducible protein A AWJ11_01230 PF00375 Sodium:dicarboxylate symporter family AWJ11_01235 PF02237 Biotin protein ligase C terminal domain AWJ11_01235 PF08279 HTH domain AWJ11_01235 PF03099 Biotin/lipoate A/B protein ligase family AWJ11_01240 PF03309 Type III pantothenate kinase AWJ11_01265 PF00854 POT family AWJ11_01270 PF08240 Alcohol dehydrogenase GroES-like domain AWJ11_01270 PF00107 Zinc-binding dehydrogenase AWJ11_01275 PF01527 Transposase AWJ11_01280 PF13276 HTH-like domain AWJ11_01280 PF13333 Integrase core domain AWJ11_01280 PF00665 Integrase core domain AWJ11_01295 PF02881 SRP54-type protein, helical bundle domain AWJ11_01295 PF00448 SRP54-type protein, GTPase domain AWJ11_01345 PF13936 Helix-turn-helix domain AWJ11_01345 PF00665 Integrase core domain AWJ11_01380 PF13419 Haloacid dehalogenase-like hydrolase AWJ11_01405 PF01066 CDP-alcohol phosphatidyltransferase AWJ11_01415 PF00583 Acetyltransferase (GNAT) family AWJ11_01420 PF16658 Class II release factor RF3, C-terminal domain AWJ11_01420 PF03144 Elongation factor Tu domain 2 AWJ11_01420 PF00009 Elongation factor Tu GTP binding domain AWJ11_01425 PF01026 TatD related DNase AWJ11_01435 PF00899 ThiF family AWJ11_01470 PF00403 Heavy-metal-associated domain AWJ11_01475 PF13610 DDE domain AWJ11_01490 PF00132 Bacterial transferase hexapeptide (six repeats) AWJ11_01505 PF00069 Protein kinase domain AWJ11_01505 PF03793 PASTA domain AWJ11_01515 PF01609 Transposase DDE domain AWJ11_01525 PF00202 Aminotransferase class-III AWJ11_01535 PF00301 Rubredoxin AWJ11_01545 PF01521 Iron-sulphur cluster biosynthesis AWJ11_01575 PF09115 DNA polymerase III, delta subunit, C terminal AWJ11_01585 PF01026 TatD related DNase AWJ11_01605 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AWJ11_01610 PF00480 ROK family AWJ11_01615 PF00474 Sodium:solute symporter family AWJ11_01620 PF00701 Dihydrodipicolinate synthetase family AWJ11_01635 PF00665 Integrase core domain AWJ11_01635 PF13936 Helix-turn-helix domain AWJ11_01650 PF03618 Kinase/pyrophosphorylase AWJ11_01655 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AWJ11_01655 PF00391 PEP-utilising enzyme, mobile domain AWJ11_01655 PF02896 PEP-utilising enzyme, TIM barrel domain AWJ11_01660 PF00324 Amino acid permease AWJ11_01685 PF13936 Helix-turn-helix domain AWJ11_01685 PF00665 Integrase core domain AWJ11_01690 PF13737 Transposase DDE domain AWJ11_01715 PF17768 RecJ OB domain AWJ11_01715 PF02272 DHHA1 domain AWJ11_01715 PF01368 DHH family AWJ11_01720 PF00665 Integrase core domain AWJ11_01720 PF13936 Helix-turn-helix domain AWJ11_01740 PF01609 Transposase DDE domain AWJ11_01750 PF00266 Aminotransferase class-V AWJ11_01760 PF00083 Sugar (and other) transporter AWJ11_01760 PF08946 Osmosensory transporter coiled coil AWJ11_01775 PF07690 Major Facilitator Superfamily AWJ11_01795 PF13610 DDE domain AWJ11_01810 PF03734 L,D-transpeptidase catalytic domain AWJ11_01830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AWJ11_01830 PF00512 His Kinase A (phospho-acceptor) domain AWJ11_01830 PF07689 KaiB domain AWJ11_01840 PF10119 Predicted methyltransferase regulatory domain AWJ11_01840 PF13847 Methyltransferase domain AWJ11_01855 PF14319 Transposase zinc-binding domain AWJ11_01855 PF04986 Putative transposase AWJ11_01865 PF13936 Helix-turn-helix domain AWJ11_01865 PF00665 Integrase core domain AWJ11_01875 PF13936 Helix-turn-helix domain AWJ11_01875 PF00665 Integrase core domain AWJ11_01880 PF11940 Domain of unknown function (DUF3458) Ig-like fold AWJ11_01880 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AWJ11_01880 PF01433 Peptidase family M1 domain AWJ11_01890 PF01144 Coenzyme A transferase AWJ11_01895 PF01144 Coenzyme A transferase AWJ11_01905 PF07859 alpha/beta hydrolase fold AWJ11_01910 PF00672 HAMP domain AWJ11_01910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AWJ11_01920 PF00324 Amino acid permease AWJ11_01945 PF02685 Glucokinase AWJ11_01950 PF02954 Bacterial regulatory protein, Fis family AWJ11_01950 PF00072 Response regulator receiver domain AWJ11_01950 PF00158 Sigma-54 interaction domain AWJ11_01955 PF00989 PAS fold AWJ11_01955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AWJ11_01955 PF00512 His Kinase A (phospho-acceptor) domain AWJ11_01960 PF02954 Bacterial regulatory protein, Fis family AWJ11_01960 PF00158 Sigma-54 interaction domain AWJ11_01960 PF00072 Response regulator receiver domain AWJ11_01965 PF02049 Flagellar hook-basal body complex protein FliE AWJ11_01970 PF08345 Flagellar M-ring protein C-terminal AWJ11_01970 PF01514 Secretory protein of YscJ/FliF family AWJ11_01975 PF14841 FliG middle domain AWJ11_01975 PF14842 FliG N-terminal domain AWJ11_01975 PF01706 FliG C-terminal domain AWJ11_01985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AWJ11_01985 PF18269 T3SS EscN ATPase C-terminal domain AWJ11_02015 PF00285 Citrate synthase, C-terminal domain AWJ11_02020 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AWJ11_02025 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AWJ11_02030 PF02910 Fumarate reductase flavoprotein C-term AWJ11_02030 PF00890 FAD binding domain AWJ11_02035 PF13085 2Fe-2S iron-sulfur cluster binding domain AWJ11_02040 PF16870 2-oxoglutarate dehydrogenase C-terminal AWJ11_02040 PF16078 2-oxoglutarate dehydrogenase N-terminus AWJ11_02040 PF02779 Transketolase, pyrimidine binding domain AWJ11_02040 PF00676 Dehydrogenase E1 component AWJ11_02045 PF02817 e3 binding domain AWJ11_02045 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AWJ11_02045 PF00364 Biotin-requiring enzyme AWJ11_02050 PF00549 CoA-ligase AWJ11_02050 PF08442 ATP-grasp domain AWJ11_02055 PF02629 CoA binding domain AWJ11_02055 PF00549 CoA-ligase AWJ11_02065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AWJ11_02065 PF00672 HAMP domain AWJ11_02065 PF02743 Cache domain AWJ11_02070 PF13936 Helix-turn-helix domain AWJ11_02070 PF00665 Integrase core domain AWJ11_02090 PF02421 Ferrous iron transport protein B AWJ11_02090 PF17910 FeoB cytosolic helical domain AWJ11_02090 PF07670 Nucleoside recognition AWJ11_02090 PF07664 Ferrous iron transport protein B C terminus AWJ11_02095 PF04023 FeoA domain AWJ11_02100 PF00572 Ribosomal protein L13 AWJ11_02105 PF00380 Ribosomal protein S9/S16 AWJ11_02110 PF02798 Glutathione S-transferase, N-terminal domain AWJ11_02110 PF00043 Glutathione S-transferase, C-terminal domain AWJ11_02115 PF04386 Stringent starvation protein B AWJ11_02120 PF13580 SIS domain AWJ11_02125 PF02021 Uncharacterised protein family UPF0102 AWJ11_02135 PF00156 Phosphoribosyl transferase domain AWJ11_02140 PF00348 Polyprenyl synthetase AWJ11_02145 PF00829 Ribosomal prokaryotic L21 protein AWJ11_02150 PF01016 Ribosomal L27 protein AWJ11_02155 PF01018 GTP1/OBG AWJ11_02155 PF01926 50S ribosome-binding GTPase AWJ11_02160 PF00672 HAMP domain AWJ11_02160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AWJ11_02160 PF12729 Four helix bundle sensory module for signal transduction AWJ11_02165 PF13333 Integrase core domain AWJ11_02165 PF13276 HTH-like domain AWJ11_02165 PF00665 Integrase core domain AWJ11_02170 PF04055 Radical SAM superfamily AWJ11_02175 PF01132 Elongation factor P (EF-P) OB domain AWJ11_02175 PF09285 Elongation factor P, C-terminal AWJ11_02175 PF08207 Elongation factor P (EF-P) KOW-like domain AWJ11_02180 PF00152 tRNA synthetases class II (D, K and N) AWJ11_02205 PF13439 Glycosyltransferase Family 4 AWJ11_02205 PF00534 Glycosyl transferases group 1 AWJ11_02215 PF17757 UvrB interaction domain AWJ11_02215 PF04851 Type III restriction enzyme, res subunit AWJ11_02215 PF00271 Helicase conserved C-terminal domain AWJ11_02215 PF02151 UvrB/uvrC motif AWJ11_02215 PF12344 Ultra-violet resistance protein B AWJ11_02230 PF02719 Polysaccharide biosynthesis protein AWJ11_02235 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AWJ11_02240 PF02348 Cytidylyltransferase AWJ11_02250 PF03102 NeuB family AWJ11_02250 PF08666 SAF domain AWJ11_02270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AWJ11_02270 PF02824 TGS domain AWJ11_02270 PF03129 Anticodon binding domain AWJ11_02270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AWJ11_02275 PF00707 Translation initiation factor IF-3, C-terminal domain AWJ11_02275 PF05198 Translation initiation factor IF-3, N-terminal domain AWJ11_02280 PF01632 Ribosomal protein L35 AWJ11_02285 PF00453 Ribosomal protein L20 AWJ11_02290 PF01409 tRNA synthetases class II core domain (F) AWJ11_02290 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AWJ11_02295 PF01588 Putative tRNA binding domain AWJ11_02295 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AWJ11_02295 PF03483 B3/4 domain AWJ11_02295 PF03484 tRNA synthetase B5 domain AWJ11_02295 PF03147 Ferredoxin-fold anticodon binding domain AWJ11_02315 PF13333 Integrase core domain AWJ11_02315 PF00665 Integrase core domain AWJ11_02315 PF13276 HTH-like domain AWJ11_02320 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AWJ11_02335 PF01645 Conserved region in glutamate synthase AWJ11_02370 PF00665 Integrase core domain AWJ11_02370 PF13936 Helix-turn-helix domain AWJ11_02380 PF00175 Oxidoreductase NAD-binding domain AWJ11_02380 PF00111 2Fe-2S iron-sulfur cluster binding domain AWJ11_02380 PF00970 Oxidoreductase FAD-binding domain AWJ11_02385 PF03352 Methyladenine glycosylase AWJ11_02395 PF01527 Transposase AWJ11_02400 PF13333 Integrase core domain AWJ11_02400 PF13276 HTH-like domain AWJ11_02400 PF00665 Integrase core domain AWJ11_02425 PF13610 DDE domain AWJ11_02440 PF01649 Ribosomal protein S20 AWJ11_02445 PF03023 Lipid II flippase MurJ AWJ11_02450 PF06574 FAD synthetase AWJ11_02450 PF01687 Riboflavin kinase AWJ11_02455 PF13936 Helix-turn-helix domain AWJ11_02460 PF00133 tRNA synthetases class I (I, L, M and V) AWJ11_02460 PF06827 Zinc finger found in FPG and IleRS AWJ11_02460 PF08264 Anticodon-binding domain of tRNA AWJ11_02465 PF01252 Signal peptidase (SPase) II AWJ11_02470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AWJ11_02475 PF07690 Major Facilitator Superfamily AWJ11_02485 PF00230 Major intrinsic protein AWJ11_02490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AWJ11_02490 PF08447 PAS fold AWJ11_02500 PF00665 Integrase core domain AWJ11_02500 PF13936 Helix-turn-helix domain AWJ11_02515 PF05114 Protein of unknown function (DUF692) AWJ11_02535 PF00293 NUDIX domain AWJ11_02575 PF00665 Integrase core domain AWJ11_02575 PF13936 Helix-turn-helix domain AWJ11_02605 PF01475 Ferric uptake regulator family AWJ11_02610 PF00719 Inorganic pyrophosphatase AWJ11_02615 PF01168 Alanine racemase, N-terminal domain AWJ11_02615 PF14031 Putative serine dehydratase domain AWJ11_02625 PF02772 S-adenosylmethionine synthetase, central domain AWJ11_02625 PF02773 S-adenosylmethionine synthetase, C-terminal domain AWJ11_02625 PF00438 S-adenosylmethionine synthetase, N-terminal domain AWJ11_02630 PF00456 Transketolase, thiamine diphosphate binding domain AWJ11_02630 PF02780 Transketolase, C-terminal domain AWJ11_02630 PF02779 Transketolase, pyrimidine binding domain AWJ11_02635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AWJ11_02635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AWJ11_02640 PF00162 Phosphoglycerate kinase AWJ11_02645 PF02887 Pyruvate kinase, alpha/beta domain AWJ11_02645 PF00224 Pyruvate kinase, barrel domain AWJ11_02650 PF01116 Fructose-bisphosphate aldolase class-II AWJ11_02660 PF13276 HTH-like domain AWJ11_02660 PF00665 Integrase core domain AWJ11_02660 PF13333 Integrase core domain AWJ11_02670 PF13936 Helix-turn-helix domain AWJ11_02670 PF00665 Integrase core domain AWJ11_02710 PF01609 Transposase DDE domain AWJ11_02725 PF01596 O-methyltransferase AWJ11_02765 PF00929 Exonuclease AWJ11_02770 PF07690 Major Facilitator Superfamily AWJ11_02775 PF03462 PCRF domain AWJ11_02775 PF00472 RF-1 domain AWJ11_02780 PF00152 tRNA synthetases class II (D, K and N) AWJ11_02780 PF01336 OB-fold nucleic acid binding domain AWJ11_02795 PF01527 Transposase AWJ11_02800 PF13936 Helix-turn-helix domain AWJ11_02800 PF00665 Integrase core domain AWJ11_02830 PF00677 Lumazine binding domain AWJ11_02835 PF08443 RimK-like ATP-grasp domain AWJ11_02835 PF18030 RimK PreATP-grasp domain AWJ11_02850 PF01527 Transposase AWJ11_02855 PF13276 HTH-like domain AWJ11_02855 PF00665 Integrase core domain AWJ11_02855 PF13333 Integrase core domain AWJ11_02860 PF13936 Helix-turn-helix domain AWJ11_02860 PF00665 Integrase core domain AWJ11_02870 PF18075 FtsX extracellular domain AWJ11_02870 PF02687 FtsX-like permease family AWJ11_02875 PF00005 ABC transporter AWJ11_02890 PF13302 Acetyltransferase (GNAT) domain AWJ11_02895 PF01609 Transposase DDE domain AWJ11_02910 PF00365 Phosphofructokinase AWJ11_02920 PF02875 Mur ligase family, glutamate ligase domain AWJ11_02920 PF01225 Mur ligase family, catalytic domain AWJ11_02920 PF08245 Mur ligase middle domain AWJ11_02925 PF02441 Flavoprotein AWJ11_02935 PF00672 HAMP domain AWJ11_02935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AWJ11_02940 PF13936 Helix-turn-helix domain AWJ11_02940 PF00665 Integrase core domain AWJ11_02955 PF13419 Haloacid dehalogenase-like hydrolase AWJ11_02970 PF03795 YCII-related domain AWJ11_02975 PF04279 Intracellular septation protein A AWJ11_02980 PF01300 Telomere recombination AWJ11_02985 PF02616 Segregation and condensation protein ScpA AWJ11_02990 PF04079 Segregation and condensation complex subunit ScpB AWJ11_02995 PF00849 RNA pseudouridylate synthase AWJ11_02995 PF01479 S4 domain AWJ11_03015 PF03702 Anhydro-N-acetylmuramic acid kinase AWJ11_03020 PF01551 Peptidase family M23 AWJ11_03020 PF04225 Opacity-associated protein A LysM-like domain AWJ11_03025 PF00579 tRNA synthetases class I (W and Y) AWJ11_03035 PF01027 Inhibitor of apoptosis-promoting Bax1 AWJ11_03040 PF00294 pfkB family carbohydrate kinase AWJ11_03055 PF01168 Alanine racemase, N-terminal domain AWJ11_03055 PF00842 Alanine racemase, C-terminal domain AWJ11_03070 PF13302 Acetyltransferase (GNAT) domain AWJ11_03080 PF01527 Transposase AWJ11_03090 PF13936 Helix-turn-helix domain AWJ11_03090 PF00665 Integrase core domain AWJ11_03105 PF13276 HTH-like domain AWJ11_03105 PF00665 Integrase core domain AWJ11_03105 PF13333 Integrase core domain AWJ11_03115 PF01527 Transposase AWJ11_03135 PF00657 GDSL-like Lipase/Acylhydrolase AWJ11_03140 PF01609 Transposase DDE domain AWJ11_03145 PF01527 Transposase AWJ11_03160 PF03315 Serine dehydratase beta chain AWJ11_03160 PF03313 Serine dehydratase alpha chain AWJ11_03190 PF02390 Putative methyltransferase AWJ11_03195 PF03600 Citrate transporter AWJ11_03195 PF02080 TrkA-C domain AWJ11_03235 PF00342 Phosphoglucose isomerase AWJ11_03240 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AWJ11_03240 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AWJ11_03240 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AWJ11_03245 PF00483 Nucleotidyl transferase AWJ11_03250 PF03781 Sulfatase-modifying factor enzyme 1 AWJ11_03250 PF12867 DinB superfamily AWJ11_03275 PF13276 HTH-like domain AWJ11_03275 PF00665 Integrase core domain AWJ11_03275 PF13333 Integrase core domain AWJ11_03280 PF01609 Transposase DDE domain AWJ11_03285 PF01527 Transposase AWJ11_03290 PF13333 Integrase core domain AWJ11_03290 PF13276 HTH-like domain AWJ11_03290 PF00665 Integrase core domain AWJ11_03305 PF01609 Transposase DDE domain AWJ11_03310 PF07690 Major Facilitator Superfamily AWJ11_03315 PF00155 Aminotransferase class I and II AWJ11_03320 PF01931 Protein of unknown function DUF84 AWJ11_03325 PF01557 Fumarylacetoacetate (FAA) hydrolase family AWJ11_03330 PF01584 CheW-like domain AWJ11_03330 PF00072 Response regulator receiver domain AWJ11_03355 PF01527 Transposase AWJ11_03360 PF13276 HTH-like domain AWJ11_03360 PF00665 Integrase core domain AWJ11_03360 PF13333 Integrase core domain AWJ11_03375 PF00923 Transaldolase/Fructose-6-phosphate aldolase AWJ11_03380 PF01467 Cytidylyltransferase-like AWJ11_03385 PF00037 4Fe-4S binding domain AWJ11_03405 PF09371 Tex-like protein N-terminal domain AWJ11_03405 PF00575 S1 RNA binding domain AWJ11_03405 PF17674 HHH domain AWJ11_03405 PF16921 Tex protein YqgF-like domain AWJ11_03420 PF01527 Transposase AWJ11_03425 PF13333 Integrase core domain AWJ11_03425 PF13276 HTH-like domain AWJ11_03425 PF00665 Integrase core domain AWJ11_03430 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AWJ11_03435 PF00175 Oxidoreductase NAD-binding domain AWJ11_03435 PF00111 2Fe-2S iron-sulfur cluster binding domain AWJ11_03435 PF00970 Oxidoreductase FAD-binding domain AWJ11_03440 PF01316 Arginine repressor, DNA binding domain AWJ11_03440 PF02863 Arginine repressor, C-terminal domain AWJ11_03485 PF01527 Transposase AWJ11_03490 PF13333 Integrase core domain AWJ11_03490 PF13276 HTH-like domain AWJ11_03490 PF00665 Integrase core domain AWJ11_03515 PF13936 Helix-turn-helix domain AWJ11_03515 PF00665 Integrase core domain AWJ11_03520 PF02934 GatB/GatE catalytic domain AWJ11_03520 PF02637 GatB domain AWJ11_03525 PF01425 Amidase AWJ11_03530 PF02686 Glu-tRNAGln amidotransferase C subunit AWJ11_03540 PF04085 rod shape-determining protein MreC AWJ11_03550 PF02545 Maf-like protein AWJ11_03555 PF00575 S1 RNA binding domain AWJ11_03555 PF10150 Ribonuclease E/G family AWJ11_03565 PF02348 Cytidylyltransferase AWJ11_03575 PF13936 Helix-turn-helix domain AWJ11_03575 PF00665 Integrase core domain AWJ11_03580 PF01609 Transposase DDE domain AWJ11_03585 PF00665 Integrase core domain AWJ11_03585 PF13936 Helix-turn-helix domain AWJ11_03595 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AWJ11_03595 PF14602 Hexapeptide repeat of succinyl-transferase AWJ11_03600 PF00710 Asparaginase, N-terminal AWJ11_03600 PF17763 Glutaminase/Asparaginase C-terminal domain AWJ11_03605 PF08335 GlnD PII-uridylyltransferase AWJ11_03605 PF01842 ACT domain AWJ11_03605 PF01966 HD domain AWJ11_03605 PF01909 Nucleotidyltransferase domain AWJ11_03610 PF00557 Metallopeptidase family M24 AWJ11_03615 PF00318 Ribosomal protein S2 AWJ11_03620 PF00889 Elongation factor TS AWJ11_03625 PF00696 Amino acid kinase family AWJ11_03630 PF01765 Ribosome recycling factor AWJ11_03635 PF01255 Putative undecaprenyl diphosphate synthase AWJ11_03665 PF00293 NUDIX domain AWJ11_03690 PF01103 Surface antigen AWJ11_03690 PF07244 Surface antigen variable number repeat AWJ11_03700 PF00132 Bacterial transferase hexapeptide (six repeats) AWJ11_03700 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AWJ11_03705 PF07977 FabA-like domain AWJ11_03710 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AWJ11_03710 PF00132 Bacterial transferase hexapeptide (six repeats) AWJ11_03715 PF02684 Lipid-A-disaccharide synthetase AWJ11_03720 PF01351 Ribonuclease HII AWJ11_03725 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AWJ11_03725 PF07733 Bacterial DNA polymerase III alpha NTPase domain AWJ11_03725 PF02811 PHP domain AWJ11_03725 PF01336 OB-fold nucleic acid binding domain AWJ11_03725 PF14579 Helix-hairpin-helix motif AWJ11_03730 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AWJ11_03735 PF11734 TilS substrate C-terminal domain AWJ11_03735 PF09179 TilS substrate binding domain AWJ11_03735 PF01171 PP-loop family AWJ11_03740 PF01740 STAS domain AWJ11_03740 PF00916 Sulfate permease family AWJ11_03770 PF00665 Integrase core domain AWJ11_03770 PF13936 Helix-turn-helix domain AWJ11_03785 PF05147 Lanthionine synthetase C-like protein AWJ11_03785 PF13575 Domain of unknown function (DUF4135) AWJ11_03800 PF07690 Major Facilitator Superfamily AWJ11_03830 PF00080 Copper/zinc superoxide dismutase (SODC) AWJ11_03835 PF13333 Integrase core domain AWJ11_03835 PF13276 HTH-like domain AWJ11_03835 PF00665 Integrase core domain AWJ11_03840 PF01527 Transposase AWJ11_03880 PF00478 IMP dehydrogenase / GMP reductase domain AWJ11_03880 PF00571 CBS domain AWJ11_03885 PF00117 Glutamine amidotransferase class-I AWJ11_03885 PF00958 GMP synthase C terminal domain AWJ11_03885 PF02540 NAD synthase AWJ11_03895 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AWJ11_03895 PF02769 AIR synthase related protein, C-terminal domain AWJ11_03895 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AWJ11_03920 PF04545 Sigma-70, region 4 AWJ11_03920 PF04539 Sigma-70 region 3 AWJ11_03920 PF04542 Sigma-70 region 2 AWJ11_03920 PF00140 Sigma-70 factor, region 1.2 AWJ11_03930 PF00005 ABC transporter AWJ11_03930 PF08402 TOBE domain AWJ11_03935 PF08543 Phosphomethylpyrimidine kinase AWJ11_03960 PF17284 Spermidine synthase tetramerisation domain AWJ11_03970 PF00529 HlyD membrane-fusion protein of T1SS AWJ11_03970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AWJ11_03975 PF07690 Major Facilitator Superfamily AWJ11_03980 PF02321 Outer membrane efflux protein AWJ11_03985 PF00883 Cytosol aminopeptidase family, catalytic domain AWJ11_03985 PF02789 Cytosol aminopeptidase family, N-terminal domain AWJ11_03990 PF02548 Ketopantoate hydroxymethyltransferase AWJ11_03995 PF00072 Response regulator receiver domain AWJ11_03995 PF00196 Bacterial regulatory proteins, luxR family AWJ11_04000 PF01541 GIY-YIG catalytic domain AWJ11_04000 PF02151 UvrB/uvrC motif AWJ11_04000 PF08459 UvrC Helix-hairpin-helix N-terminal AWJ11_04005 PF01066 CDP-alcohol phosphatidyltransferase AWJ11_04030 PF13936 Helix-turn-helix domain AWJ11_04030 PF00665 Integrase core domain AWJ11_04040 PF01527 Transposase AWJ11_04050 PF13333 Integrase core domain AWJ11_04050 PF13276 HTH-like domain AWJ11_04050 PF00665 Integrase core domain AWJ11_04095 PF13333 Integrase core domain AWJ11_04095 PF00665 Integrase core domain AWJ11_04095 PF13276 HTH-like domain AWJ11_04105 PF13276 HTH-like domain AWJ11_04105 PF00665 Integrase core domain AWJ11_04105 PF13333 Integrase core domain AWJ11_04110 PF01609 Transposase DDE domain AWJ11_04130 PF00248 Aldo/keto reductase family AWJ11_04140 PF00083 Sugar (and other) transporter AWJ11_04140 PF07690 Major Facilitator Superfamily AWJ11_04145 PF00596 Class II Aldolase and Adducin N-terminal domain AWJ11_04155 PF01053 Cys/Met metabolism PLP-dependent enzyme AWJ11_04165 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AWJ11_04165 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AWJ11_04180 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AWJ11_04180 PF05697 Bacterial trigger factor protein (TF) AWJ11_04180 PF05698 Bacterial trigger factor protein (TF) C-terminus AWJ11_04185 PF00574 Clp protease AWJ11_04190 PF06689 ClpX C4-type zinc finger AWJ11_04190 PF07724 AAA domain (Cdc48 subfamily) AWJ11_04190 PF10431 C-terminal, D2-small domain, of ClpB protein AWJ11_04195 PF05362 Lon protease (S16) C-terminal proteolytic domain AWJ11_04195 PF00004 ATPase family associated with various cellular activities (AAA) AWJ11_04195 PF02190 ATP-dependent protease La (LON) substrate-binding domain AWJ11_04200 PF00216 Bacterial DNA-binding protein AWJ11_04210 PF03279 Bacterial lipid A biosynthesis acyltransferase AWJ11_04215 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AWJ11_04220 PF03707 Bacterial signalling protein N terminal repeat AWJ11_04220 PF00990 Diguanylate cyclase, GGDEF domain AWJ11_04220 PF00563 EAL domain AWJ11_04230 PF03412 Peptidase C39 family AWJ11_04230 PF00005 ABC transporter AWJ11_04230 PF00664 ABC transporter transmembrane region AWJ11_04235 PF00664 ABC transporter transmembrane region AWJ11_04235 PF03412 Peptidase C39 family AWJ11_04235 PF00005 ABC transporter AWJ11_04240 PF00288 GHMP kinases N terminal domain AWJ11_04240 PF10509 Galactokinase galactose-binding signature AWJ11_04240 PF08544 GHMP kinases C terminal AWJ11_04245 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AWJ11_04245 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AWJ11_04250 PF00768 D-alanyl-D-alanine carboxypeptidase AWJ11_04250 PF07943 Penicillin-binding protein 5, C-terminal domain AWJ11_04320 PF13936 Helix-turn-helix domain AWJ11_04320 PF00665 Integrase core domain AWJ11_04325 PF00986 DNA gyrase B subunit, carboxyl terminus AWJ11_04325 PF00204 DNA gyrase B AWJ11_04325 PF01751 Toprim domain AWJ11_04325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AWJ11_04395 PF00216 Bacterial DNA-binding protein AWJ11_04400 PF00293 NUDIX domain AWJ11_04405 PF01609 Transposase DDE domain AWJ11_04415 PF00056 lactate/malate dehydrogenase, NAD binding domain AWJ11_04415 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AWJ11_04420 PF02321 Outer membrane efflux protein AWJ11_04430 PF05728 Uncharacterised protein family (UPF0227) AWJ11_04435 PF00664 ABC transporter transmembrane region AWJ11_04435 PF00005 ABC transporter AWJ11_04440 PF00005 ABC transporter AWJ11_04440 PF00664 ABC transporter transmembrane region AWJ11_04460 PF03600 Citrate transporter AWJ11_04465 PF00854 POT family AWJ11_04470 PF01609 Transposase DDE domain AWJ11_04475 PF13936 Helix-turn-helix domain AWJ11_04475 PF00665 Integrase core domain AWJ11_04500 PF00689 Cation transporting ATPase, C-terminus AWJ11_04500 PF00690 Cation transporter/ATPase, N-terminus AWJ11_04505 PF13276 HTH-like domain AWJ11_04505 PF00665 Integrase core domain AWJ11_04505 PF13333 Integrase core domain AWJ11_04510 PF00689 Cation transporting ATPase, C-terminus AWJ11_04510 PF00690 Cation transporter/ATPase, N-terminus AWJ11_04515 PF18146 Damage-inducible protein CinA KH domain AWJ11_04515 PF02464 Competence-damaged protein AWJ11_04515 PF00994 Probable molybdopterin binding domain AWJ11_04530 PF00665 Integrase core domain AWJ11_04530 PF13276 HTH-like domain AWJ11_04530 PF13333 Integrase core domain AWJ11_04540 PF01609 Transposase DDE domain AWJ11_04555 PF13378 Enolase C-terminal domain-like AWJ11_04555 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AWJ11_04560 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AWJ11_04560 PF14850 DNA-binding domain of Proline dehydrogenase AWJ11_04560 PF01619 Proline dehydrogenase AWJ11_04560 PF00171 Aldehyde dehydrogenase family AWJ11_04565 PF00474 Sodium:solute symporter family AWJ11_04570 PF10417 C-terminal domain of 1-Cys peroxiredoxin AWJ11_04570 PF00578 AhpC/TSA family AWJ11_04580 PF10119 Predicted methyltransferase regulatory domain AWJ11_04580 PF13847 Methyltransferase domain AWJ11_04585 PF01609 Transposase DDE domain AWJ11_04600 PF00665 Integrase core domain AWJ11_04600 PF13936 Helix-turn-helix domain AWJ11_04615 PF01609 Transposase DDE domain AWJ11_04630 PF00595 PDZ domain AWJ11_04645 PF03969 AFG1-like ATPase AWJ11_04650 PF13520 Amino acid permease AWJ11_04655 PF00665 Integrase core domain AWJ11_04655 PF13936 Helix-turn-helix domain AWJ11_04665 PF13333 Integrase core domain AWJ11_04665 PF00665 Integrase core domain AWJ11_04665 PF13276 HTH-like domain AWJ11_04675 PF13276 HTH-like domain AWJ11_04675 PF00665 Integrase core domain AWJ11_04675 PF13333 Integrase core domain AWJ11_04710 PF13333 Integrase core domain AWJ11_04710 PF00665 Integrase core domain AWJ11_04710 PF13276 HTH-like domain AWJ11_04750 PF01527 Transposase AWJ11_04755 PF00665 Integrase core domain AWJ11_04755 PF13333 Integrase core domain AWJ11_04755 PF13276 HTH-like domain AWJ11_04780 PF03979 Sigma-70 factor, region 1.1 AWJ11_04780 PF04546 Sigma-70, non-essential region AWJ11_04780 PF04542 Sigma-70 region 2 AWJ11_04780 PF00140 Sigma-70 factor, region 1.2 AWJ11_04780 PF04539 Sigma-70 region 3 AWJ11_04780 PF04545 Sigma-70, region 4 AWJ11_04785 PF08275 DNA primase catalytic core, N-terminal domain AWJ11_04785 PF08278 DNA primase DnaG DnaB-binding AWJ11_04785 PF13662 Toprim domain AWJ11_04785 PF01807 CHC2 zinc finger AWJ11_04785 PF10410 DnaB-helicase binding domain of primase AWJ11_04790 PF09424 Yqey-like protein AWJ11_04795 PF01165 Ribosomal protein S21 AWJ11_04800 PF00814 Glycoprotease family AWJ11_04805 PF02660 Glycerol-3-phosphate acyltransferase AWJ11_04820 PF01609 Transposase DDE domain AWJ11_04830 PF01609 Transposase DDE domain AWJ11_04840 PF00665 Integrase core domain AWJ11_04840 PF13936 Helix-turn-helix domain AWJ11_04870 PF08244 Glycosyl hydrolases family 32 C terminal AWJ11_04870 PF00251 Glycosyl hydrolases family 32 N-terminal domain AWJ11_04885 PF01979 Amidohydrolase family AWJ11_04890 PF01243 Pyridoxamine 5'-phosphate oxidase AWJ11_04890 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AWJ11_04895 PF00582 Universal stress protein family AWJ11_04900 PF00491 Arginase family AWJ11_04905 PF01979 Amidohydrolase family AWJ11_04910 PF01175 Urocanase Rossmann-like domain AWJ11_04910 PF17392 Urocanase C-terminal domain AWJ11_04910 PF17391 Urocanase N-terminal domain AWJ11_04915 PF00221 Aromatic amino acid lyase AWJ11_04940 PF01609 Transposase DDE domain AWJ11_04960 PF05958 tRNA (Uracil-5-)-methyltransferase AWJ11_04965 PF13291 ACT domain AWJ11_04965 PF04607 Region found in RelA / SpoT proteins AWJ11_04965 PF02824 TGS domain AWJ11_04975 PF03819 MazG nucleotide pyrophosphohydrolase domain AWJ11_04980 PF03819 MazG nucleotide pyrophosphohydrolase domain AWJ11_04985 PF03641 Possible lysine decarboxylase AWJ11_04990 PF05191 Adenylate kinase, active site lid AWJ11_04995 PF00085 Thioredoxin AWJ11_05000 PF07690 Major Facilitator Superfamily AWJ11_05015 PF02617 ATP-dependent Clp protease adaptor protein ClpS AWJ11_05020 PF17871 AAA lid domain AWJ11_05020 PF02861 Clp amino terminal domain, pathogenicity island component AWJ11_05020 PF10431 C-terminal, D2-small domain, of ClpB protein AWJ11_05020 PF07724 AAA domain (Cdc48 subfamily) AWJ11_05020 PF00004 ATPase family associated with various cellular activities (AAA) AWJ11_05025 PF01176 Translation initiation factor 1A / IF-1 AWJ11_05035 PF00665 Integrase core domain AWJ11_05035 PF13936 Helix-turn-helix domain AWJ11_05040 PF00665 Integrase core domain AWJ11_05040 PF13936 Helix-turn-helix domain AWJ11_05045 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AWJ11_05050 PF07992 Pyridine nucleotide-disulphide oxidoreductase AWJ11_05055 PF01580 FtsK/SpoIIIE family AWJ11_05055 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AWJ11_05055 PF17854 FtsK alpha domain AWJ11_05055 PF09397 Ftsk gamma domain AWJ11_05065 PF00459 Inositol monophosphatase family AWJ11_05070 PF00588 SpoU rRNA Methylase family AWJ11_05075 PF00266 Aminotransferase class-V AWJ11_05085 PF00334 Nucleoside diphosphate kinase AWJ11_05090 PF04055 Radical SAM superfamily AWJ11_05110 PF03129 Anticodon binding domain AWJ11_05110 PF13393 Histidyl-tRNA synthetase AWJ11_05120 PF13360 PQQ-like domain AWJ11_05125 PF01926 50S ribosome-binding GTPase AWJ11_05125 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AWJ11_05135 PF13276 HTH-like domain AWJ11_05135 PF13333 Integrase core domain AWJ11_05135 PF00665 Integrase core domain AWJ11_05145 PF13614 AAA domain AWJ11_05155 PF01584 CheW-like domain AWJ11_05190 PF00072 Response regulator receiver domain AWJ11_05195 PF00849 RNA pseudouridylate synthase AWJ11_05195 PF01479 S4 domain AWJ11_05200 PF12111 Polyribonucleotide phosphorylase C terminal AWJ11_05200 PF10150 Ribonuclease E/G family AWJ11_05200 PF00575 S1 RNA binding domain AWJ11_05210 PF04262 Glutamate-cysteine ligase AWJ11_05215 PF00749 tRNA synthetases class I (E and Q), catalytic domain AWJ11_05220 PF02075 Crossover junction endodeoxyribonuclease RuvC AWJ11_05225 PF01330 RuvA N terminal domain AWJ11_05225 PF07499 RuvA, C-terminal domain AWJ11_05230 PF17864 RuvB AAA lid domain AWJ11_05230 PF05496 Holliday junction DNA helicase RuvB P-loop domain AWJ11_05230 PF05491 RuvB C-terminal winged helix domain AWJ11_05235 PF01618 MotA/TolQ/ExbB proton channel family AWJ11_05240 PF02472 Biopolymer transport protein ExbD/TolR AWJ11_05250 PF07676 WD40-like Beta Propeller Repeat AWJ11_05250 PF04052 TolB amino-terminal domain AWJ11_05255 PF00691 OmpA family AWJ11_05260 PF16331 TolA binding protein trimerisation AWJ11_05260 PF13525 Outer membrane lipoprotein AWJ11_05265 PF04055 Radical SAM superfamily AWJ11_05285 PF02601 Exonuclease VII, large subunit AWJ11_05285 PF13742 OB-fold nucleic acid binding domain AWJ11_05290 PF00005 ABC transporter AWJ11_05295 PF01061 ABC-2 type transporter AWJ11_05305 PF00665 Integrase core domain AWJ11_05305 PF13936 Helix-turn-helix domain AWJ11_05315 PF03129 Anticodon binding domain AWJ11_05315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AWJ11_05315 PF04073 Aminoacyl-tRNA editing domain AWJ11_05320 PF01609 Transposase DDE domain AWJ11_05345 PF01609 Transposase DDE domain AWJ11_05375 PF00512 His Kinase A (phospho-acceptor) domain AWJ11_05375 PF08448 PAS fold AWJ11_05375 PF13188 PAS domain AWJ11_05375 PF00072 Response regulator receiver domain AWJ11_05375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AWJ11_05380 PF01609 Transposase DDE domain AWJ11_05385 PF00072 Response regulator receiver domain AWJ11_05385 PF00158 Sigma-54 interaction domain AWJ11_05385 PF02954 Bacterial regulatory protein, Fis family AWJ11_05395 PF02463 RecF/RecN/SMC N terminal domain AWJ11_05405 PF00533 BRCA1 C Terminus (BRCT) domain AWJ11_05405 PF01653 NAD-dependent DNA ligase adenylation domain AWJ11_05405 PF03120 NAD-dependent DNA ligase OB-fold domain AWJ11_05405 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AWJ11_05405 PF12826 Helix-hairpin-helix motif AWJ11_05410 PF01343 Peptidase family S49 AWJ11_05410 PF08496 Peptidase family S49 N-terminal AWJ11_05415 PF06508 Queuosine biosynthesis protein QueC AWJ11_05440 PF01627 Hpt domain AWJ11_05440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AWJ11_05440 PF02895 Signal transducing histidine kinase, homodimeric domain AWJ11_05440 PF01584 CheW-like domain AWJ11_05440 PF07194 P2 response regulator binding domain AWJ11_05485 PF00171 Aldehyde dehydrogenase family AWJ11_05510 PF00665 Integrase core domain AWJ11_05510 PF13276 HTH-like domain AWJ11_05510 PF13333 Integrase core domain AWJ11_05515 PF01527 Transposase AWJ11_05525 PF00108 Thiolase, N-terminal domain AWJ11_05525 PF02803 Thiolase, C-terminal domain AWJ11_05535 PF00440 Bacterial regulatory proteins, tetR family AWJ11_05545 PF00933 Glycosyl hydrolase family 3 N terminal domain AWJ11_05550 PF00924 Mechanosensitive ion channel AWJ11_05555 PF01544 CorA-like Mg2+ transporter protein AWJ11_05560 PF00501 AMP-binding enzyme AWJ11_05560 PF13193 AMP-binding enzyme C-terminal domain AWJ11_05570 PF03447 Homoserine dehydrogenase, NAD binding domain AWJ11_05570 PF00742 Homoserine dehydrogenase AWJ11_05570 PF13840 ACT domain AWJ11_05570 PF01842 ACT domain AWJ11_05570 PF00696 Amino acid kinase family AWJ11_05575 PF00288 GHMP kinases N terminal domain AWJ11_05575 PF08544 GHMP kinases C terminal AWJ11_05580 PF00291 Pyridoxal-phosphate dependent enzyme AWJ11_05580 PF14821 Threonine synthase N terminus AWJ11_05585 PF13091 PLD-like domain AWJ11_05595 PF13276 HTH-like domain AWJ11_05595 PF00665 Integrase core domain AWJ11_05595 PF13333 Integrase core domain AWJ11_05600 PF13276 HTH-like domain AWJ11_05600 PF00665 Integrase core domain AWJ11_05600 PF13333 Integrase core domain AWJ11_05605 PF00899 ThiF family AWJ11_05610 PF07690 Major Facilitator Superfamily AWJ11_05615 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AWJ11_05655 PF00700 Bacterial flagellin C-terminal helical region AWJ11_05655 PF00669 Bacterial flagellin N-terminal helical region AWJ11_05660 PF00700 Bacterial flagellin C-terminal helical region AWJ11_05660 PF00669 Bacterial flagellin N-terminal helical region AWJ11_05665 PF03646 FlaG protein AWJ11_05670 PF07195 Flagellar hook-associated protein 2 C-terminus AWJ11_05670 PF07196 Flagellin hook IN motif AWJ11_05670 PF02465 Flagellar hook-associated protein 2 N-terminus AWJ11_05675 PF02561 Flagellar protein FliS AWJ11_05710 PF01820 D-ala D-ala ligase N-terminus AWJ11_05710 PF07478 D-ala D-ala ligase C-terminus AWJ11_05720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AWJ11_05720 PF00672 HAMP domain AWJ11_05735 PF16363 GDP-mannose 4,6 dehydratase AWJ11_05745 PF00849 RNA pseudouridylate synthase AWJ11_05750 PF00857 Isochorismatase family AWJ11_05780 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AWJ11_05780 PF01266 FAD dependent oxidoreductase AWJ11_05785 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AWJ11_05785 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AWJ11_05805 PF13936 Helix-turn-helix domain AWJ11_05805 PF00665 Integrase core domain AWJ11_05825 PF00665 Integrase core domain AWJ11_05825 PF13936 Helix-turn-helix domain AWJ11_05835 PF00484 Carbonic anhydrase AWJ11_05840 PF07690 Major Facilitator Superfamily AWJ11_05845 PF00133 tRNA synthetases class I (I, L, M and V) AWJ11_05845 PF08264 Anticodon-binding domain of tRNA AWJ11_05845 PF10458 Valyl tRNA synthetase tRNA binding arm AWJ11_05855 PF02789 Cytosol aminopeptidase family, N-terminal domain AWJ11_05855 PF00883 Cytosol aminopeptidase family, catalytic domain AWJ11_05860 PF03739 Lipopolysaccharide export system permease LptF/LptG AWJ11_05870 PF02547 Queuosine biosynthesis protein AWJ11_05880 PF02699 Preprotein translocase subunit AWJ11_05885 PF07549 SecD/SecF GG Motif AWJ11_05885 PF02355 Protein export membrane protein AWJ11_05885 PF13721 SecD export protein N-terminal TM region AWJ11_05890 PF02355 Protein export membrane protein AWJ11_05890 PF07549 SecD/SecF GG Motif AWJ11_05905 PF04715 Anthranilate synthase component I, N terminal region AWJ11_05905 PF00425 chorismate binding enzyme AWJ11_05910 PF02557 D-alanyl-D-alanine carboxypeptidase AWJ11_05925 PF01370 NAD dependent epimerase/dehydratase family AWJ11_05925 PF08338 Domain of unknown function (DUF1731) AWJ11_05935 PF01527 Transposase AWJ11_05960 PF07690 Major Facilitator Superfamily AWJ11_05965 PF03966 Trm112p-like protein AWJ11_05990 PF13610 DDE domain AWJ11_05995 PF13610 DDE domain AWJ11_06005 PF03776 Septum formation topological specificity factor MinE AWJ11_06010 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AWJ11_06030 PF00209 Sodium:neurotransmitter symporter family AWJ11_06050 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AWJ11_06070 PF00209 Sodium:neurotransmitter symporter family AWJ11_06075 PF03372 Endonuclease/Exonuclease/phosphatase family AWJ11_06095 PF13276 HTH-like domain AWJ11_06095 PF00665 Integrase core domain AWJ11_06100 PF13276 HTH-like domain AWJ11_06100 PF00665 Integrase core domain AWJ11_06110 PF01609 Transposase DDE domain AWJ11_06115 PF13276 HTH-like domain AWJ11_06115 PF13333 Integrase core domain AWJ11_06115 PF00665 Integrase core domain AWJ11_06130 PF02743 Cache domain AWJ11_06130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AWJ11_06130 PF00672 HAMP domain AWJ11_06145 PF12169 DNA polymerase III subunits gamma and tau domain III AWJ11_06145 PF12170 DNA polymerase III tau subunit V interacting with alpha AWJ11_06145 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AWJ11_06150 PF02575 YbaB/EbfC DNA-binding family AWJ11_06155 PF13662 Toprim domain AWJ11_06155 PF02132 RecR protein AWJ11_06160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AWJ11_06160 PF11890 Domain of unknown function (DUF3410) AWJ11_06160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AWJ11_06165 PF01596 O-methyltransferase AWJ11_06170 PF00183 Hsp90 protein AWJ11_06230 PF01367 5'-3' exonuclease, C-terminal SAM fold AWJ11_06230 PF01612 3'-5' exonuclease AWJ11_06230 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AWJ11_06230 PF00476 DNA polymerase family A AWJ11_06245 PF05193 Peptidase M16 inactive domain AWJ11_06245 PF00675 Insulinase (Peptidase family M16) AWJ11_06245 PF08367 Peptidase M16C associated AWJ11_06255 PF01609 Transposase DDE domain AWJ11_06310 PF13333 Integrase core domain AWJ11_06310 PF13276 HTH-like domain AWJ11_06310 PF00665 Integrase core domain AWJ11_06320 PF01609 Transposase DDE domain AWJ11_06325 PF00665 Integrase core domain AWJ11_06325 PF13936 Helix-turn-helix domain AWJ11_06360 PF01641 SelR domain AWJ11_06360 PF01625 Peptide methionine sulfoxide reductase AWJ11_06385 PF00578 AhpC/TSA family AWJ11_06390 PF00701 Dihydrodipicolinate synthetase family AWJ11_06400 PF01259 SAICAR synthetase AWJ11_06440 PF00437 Type II/IV secretion system protein AWJ11_06535 PF01676 Metalloenzyme superfamily AWJ11_06540 PF01791 DeoC/LacD family aldolase AWJ11_06545 PF02322 Cytochrome bd terminal oxidase subunit II AWJ11_06550 PF01654 Cytochrome bd terminal oxidase subunit I AWJ11_06560 PF01266 FAD dependent oxidoreductase AWJ11_06560 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AWJ11_06590 PF08543 Phosphomethylpyrimidine kinase AWJ11_06605 PF01119 DNA mismatch repair protein, C-terminal domain AWJ11_06605 PF08676 MutL C terminal dimerisation domain AWJ11_06635 PF01925 Sulfite exporter TauE/SafE AWJ11_06640 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AWJ11_06645 PF02666 Phosphatidylserine decarboxylase AWJ11_06650 PF03193 RsgA GTPase AWJ11_06655 PF00929 Exonuclease AWJ11_06660 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AWJ11_06665 PF01520 N-acetylmuramoyl-L-alanine amidase AWJ11_06665 PF11741 AMIN domain AWJ11_06670 PF00210 Ferritin-like domain AWJ11_06695 PF13333 Integrase core domain AWJ11_06695 PF00665 Integrase core domain AWJ11_06695 PF13276 HTH-like domain AWJ11_06705 PF01609 Transposase DDE domain AWJ11_06715 PF13936 Helix-turn-helix domain AWJ11_06715 PF00665 Integrase core domain AWJ11_06740 PF13936 Helix-turn-helix domain AWJ11_06740 PF00665 Integrase core domain AWJ11_06750 PF12848 ABC transporter AWJ11_06750 PF00005 ABC transporter AWJ11_06755 PF13417 Glutathione S-transferase, N-terminal domain AWJ11_06760 PF01370 NAD dependent epimerase/dehydratase family AWJ11_06760 PF02222 ATP-grasp domain AWJ11_06770 PF01416 tRNA pseudouridine synthase AWJ11_06775 PF17848 Acetyl-coA carboxylase zinc finger domain AWJ11_06775 PF01039 Carboxyl transferase domain AWJ11_06780 PF08245 Mur ligase middle domain AWJ11_06780 PF02875 Mur ligase family, glutamate ligase domain AWJ11_06785 PF02674 Colicin V production protein AWJ11_06790 PF00156 Phosphoribosyl transferase domain AWJ11_06795 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AWJ11_06815 PF01624 MutS domain I AWJ11_06815 PF05190 MutS family domain IV AWJ11_06815 PF05188 MutS domain II AWJ11_06815 PF05192 MutS domain III AWJ11_06815 PF00488 MutS domain V AWJ11_06820 PF02464 Competence-damaged protein AWJ11_06825 PF00154 recA bacterial DNA recombination protein AWJ11_06830 PF02631 RecX family AWJ11_06840 PF02599 Global regulator protein family AWJ11_06875 PF13520 Amino acid permease AWJ11_06880 PF03009 Glycerophosphoryl diester phosphodiesterase family AWJ11_06885 PF07690 Major Facilitator Superfamily AWJ11_06890 PF17209 Hfq protein AWJ11_06895 PF01926 50S ribosome-binding GTPase AWJ11_06895 PF16360 GTP-binding GTPase Middle Region AWJ11_06895 PF13167 GTP-binding GTPase N-terminal AWJ11_06900 PF01145 SPFH domain / Band 7 family AWJ11_06905 PF01145 SPFH domain / Band 7 family AWJ11_06910 PF00709 Adenylosuccinate synthetase AWJ11_06915 PF00860 Permease family AWJ11_06920 PF00773 RNB domain AWJ11_06920 PF08461 Ribonuclease R winged-helix domain AWJ11_06920 PF00575 S1 RNA binding domain AWJ11_06920 PF08206 Ribonuclease B OB domain AWJ11_06920 PF17876 Cold shock domain AWJ11_06925 PF00588 SpoU rRNA Methylase family AWJ11_06925 PF08032 RNA 2'-O ribose methyltransferase substrate binding AWJ11_06950 PF01527 Transposase AWJ11_06955 PF13276 HTH-like domain AWJ11_06955 PF00665 Integrase core domain AWJ11_06955 PF13333 Integrase core domain AWJ11_06975 PF13610 DDE domain AWJ11_06980 PF00005 ABC transporter AWJ11_06985 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AWJ11_06985 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AWJ11_06990 PF04183 IucA / IucC family AWJ11_06990 PF06276 Ferric iron reductase FhuF-like transporter AWJ11_06995 PF07690 Major Facilitator Superfamily AWJ11_07005 PF07478 D-ala D-ala ligase C-terminus AWJ11_07005 PF01820 D-ala D-ala ligase N-terminus AWJ11_07010 PF07660 Secretin and TonB N terminus short domain AWJ11_07010 PF07715 TonB-dependent Receptor Plug Domain AWJ11_07010 PF00593 TonB dependent receptor AWJ11_07015 PF01618 MotA/TolQ/ExbB proton channel family AWJ11_07035 PF01497 Periplasmic binding protein AWJ11_07040 PF01032 FecCD transport family AWJ11_07050 PF01609 Transposase DDE domain AWJ11_07065 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AWJ11_07065 PF07992 Pyridine nucleotide-disulphide oxidoreductase AWJ11_07070 PF07690 Major Facilitator Superfamily AWJ11_07075 PF11953 Domain of unknown function (DUF3470) AWJ11_07075 PF00037 4Fe-4S binding domain AWJ11_07080 PF00886 Ribosomal protein S16 AWJ11_07085 PF05239 PRC-barrel domain AWJ11_07085 PF01782 RimM N-terminal domain AWJ11_07090 PF01746 tRNA (Guanine-1)-methyltransferase AWJ11_07095 PF01245 Ribosomal protein L19 AWJ11_07120 PF00665 Integrase core domain AWJ11_07120 PF13333 Integrase core domain AWJ11_07120 PF13276 HTH-like domain AWJ11_07125 PF01527 Transposase AWJ11_07140 PF00665 Integrase core domain AWJ11_07140 PF13333 Integrase core domain AWJ11_07140 PF13276 HTH-like domain AWJ11_07145 PF13936 Helix-turn-helix domain AWJ11_07145 PF00665 Integrase core domain AWJ11_07170 PF01609 Transposase DDE domain AWJ11_07180 PF00665 Integrase core domain AWJ11_07180 PF13333 Integrase core domain AWJ11_07180 PF13276 HTH-like domain AWJ11_07185 PF01527 Transposase AWJ11_07210 PF13333 Integrase core domain AWJ11_07210 PF00665 Integrase core domain AWJ11_07210 PF13276 HTH-like domain AWJ11_07220 PF01609 Transposase DDE domain AWJ11_07230 PF16193 AAA C-terminal domain AWJ11_07230 PF00004 ATPase family associated with various cellular activities (AAA) AWJ11_07230 PF12002 MgsA AAA+ ATPase C terminal AWJ11_07235 PF02261 Aspartate decarboxylase AWJ11_07240 PF06418 CTP synthase N-terminus AWJ11_07240 PF00117 Glutamine amidotransferase class-I AWJ11_07245 PF00793 DAHP synthetase I family AWJ11_07250 PF03952 Enolase, N-terminal domain AWJ11_07250 PF00113 Enolase, C-terminal TIM barrel domain AWJ11_07260 PF01142 tRNA pseudouridine synthase D (TruD) AWJ11_07265 PF13520 Amino acid permease AWJ11_07270 PF01975 Survival protein SurE AWJ11_07275 PF04542 Sigma-70 region 2 AWJ11_07275 PF00140 Sigma-70 factor, region 1.2 AWJ11_07275 PF04545 Sigma-70, region 4 AWJ11_07275 PF04539 Sigma-70 region 3 AWJ11_07290 PF01609 Transposase DDE domain AWJ11_07330 PF00665 Integrase core domain AWJ11_07330 PF13936 Helix-turn-helix domain AWJ11_07345 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AWJ11_07345 PF06481 COX Aromatic Rich Motif AWJ11_07350 PF00115 Cytochrome C and Quinol oxidase polypeptide I AWJ11_07355 PF00510 Cytochrome c oxidase subunit III AWJ11_07360 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AWJ11_07385 PF00210 Ferritin-like domain AWJ11_07410 PF00854 POT family AWJ11_07420 PF12833 Helix-turn-helix domain AWJ11_07425 PF07690 Major Facilitator Superfamily AWJ11_07430 PF03222 Tryptophan/tyrosine permease family AWJ11_07435 PF02080 TrkA-C domain AWJ11_07435 PF02254 TrkA-N domain AWJ11_07435 PF00999 Sodium/hydrogen exchanger family AWJ11_07440 PF01713 Smr domain AWJ11_07445 PF05175 Methyltransferase small domain AWJ11_07450 PF01451 Low molecular weight phosphotyrosine protein phosphatase AWJ11_07455 PF01118 Semialdehyde dehydrogenase, NAD binding domain AWJ11_07455 PF02774 Semialdehyde dehydrogenase, dimerisation domain AWJ11_07460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AWJ11_07480 PF07992 Pyridine nucleotide-disulphide oxidoreductase AWJ11_07480 PF00403 Heavy-metal-associated domain AWJ11_07480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AWJ11_07485 PF10437 Bacterial lipoate protein ligase C-terminus AWJ11_07485 PF03099 Biotin/lipoate A/B protein ligase family AWJ11_07490 PF03099 Biotin/lipoate A/B protein ligase family AWJ11_07490 PF10437 Bacterial lipoate protein ligase C-terminus AWJ11_07495 PF01551 Peptidase family M23 AWJ11_07515 PF12848 ABC transporter AWJ11_07515 PF00005 ABC transporter AWJ11_07525 PF01464 Transglycosylase SLT domain AWJ11_07525 PF01476 LysM domain AWJ11_07545 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AWJ11_07550 PF04347 Flagellar biosynthesis protein, FliO AWJ11_07555 PF00813 FliP family AWJ11_07560 PF01313 Bacterial export proteins, family 3 AWJ11_07565 PF01311 Bacterial export proteins, family 1 AWJ11_07570 PF01312 FlhB HrpN YscU SpaS Family AWJ11_07575 PF00771 FHIPEP family AWJ11_07580 PF00448 SRP54-type protein, GTPase domain AWJ11_07585 PF10609 NUBPL iron-transfer P-loop NTPase AWJ11_07590 PF04542 Sigma-70 region 2 AWJ11_07590 PF04539 Sigma-70 region 3 AWJ11_07590 PF04545 Sigma-70, region 4 AWJ11_07595 PF00072 Response regulator receiver domain AWJ11_07600 PF04344 Chemotaxis phosphatase, CheZ AWJ11_07605 PF01584 CheW-like domain AWJ11_07605 PF09078 CheY binding AWJ11_07605 PF01627 Hpt domain AWJ11_07605 PF02895 Signal transducing histidine kinase, homodimeric domain AWJ11_07605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AWJ11_07625 PF02082 Transcriptional regulator AWJ11_07630 PF01458 Uncharacterized protein family (UPF0051) AWJ11_07635 PF00005 ABC transporter AWJ11_07640 PF01458 Uncharacterized protein family (UPF0051) AWJ11_07645 PF00266 Aminotransferase class-V AWJ11_07650 PF01521 Iron-sulphur cluster biosynthesis AWJ11_07655 PF01883 Iron-sulfur cluster assembly protein AWJ11_07665 PF13936 Helix-turn-helix domain AWJ11_07665 PF00665 Integrase core domain AWJ11_07670 PF13333 Integrase core domain AWJ11_07670 PF00665 Integrase core domain AWJ11_07670 PF13276 HTH-like domain AWJ11_07675 PF01527 Transposase AWJ11_07685 PF00672 HAMP domain AWJ11_07685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AWJ11_07690 PF00485 Phosphoribulokinase / Uridine kinase family AWJ11_07695 PF07662 Na+ dependent nucleoside transporter C-terminus AWJ11_07695 PF01773 Na+ dependent nucleoside transporter N-terminus AWJ11_07695 PF07670 Nucleoside recognition AWJ11_07705 PF01966 HD domain AWJ11_07705 PF13286 Phosphohydrolase-associated domain AWJ11_07730 PF13333 Integrase core domain AWJ11_07730 PF00665 Integrase core domain AWJ11_07730 PF13276 HTH-like domain AWJ11_07735 PF01527 Transposase AWJ11_07740 PF01699 Sodium/calcium exchanger protein AWJ11_07745 PF00665 Integrase core domain AWJ11_07745 PF13936 Helix-turn-helix domain AWJ11_07750 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AWJ11_07750 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AWJ11_07790 PF13098 Thioredoxin-like domain AWJ11_07795 PF04209 homogentisate 1,2-dioxygenase AWJ11_07820 PF00665 Integrase core domain AWJ11_07820 PF13936 Helix-turn-helix domain AWJ11_07835 PF00291 Pyridoxal-phosphate dependent enzyme AWJ11_07840 PF07690 Major Facilitator Superfamily AWJ11_07845 PF00929 Exonuclease AWJ11_07855 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AWJ11_07855 PF02154 Flagellar motor switch protein FliM AWJ11_07890 PF00883 Cytosol aminopeptidase family, catalytic domain AWJ11_07890 PF12404 Peptidase AWJ11_07910 PF01527 Transposase AWJ11_07915 PF00665 Integrase core domain AWJ11_07915 PF13276 HTH-like domain AWJ11_07915 PF13333 Integrase core domain AWJ11_07945 PF13333 Integrase core domain AWJ11_07945 PF13276 HTH-like domain AWJ11_07945 PF00665 Integrase core domain AWJ11_07955 PF02899 Phage integrase, N-terminal SAM-like domain AWJ11_07955 PF00589 Phage integrase family AWJ11_07970 PF13936 Helix-turn-helix domain AWJ11_07970 PF00665 Integrase core domain AWJ11_07985 PF02254 TrkA-N domain AWJ11_07985 PF00999 Sodium/hydrogen exchanger family AWJ11_08005 PF13276 HTH-like domain AWJ11_08005 PF00665 Integrase core domain AWJ11_08005 PF13333 Integrase core domain AWJ11_08010 PF13936 Helix-turn-helix domain AWJ11_08010 PF00665 Integrase core domain AWJ11_08015 PF01235 Sodium:alanine symporter family AWJ11_08020 PF00574 Clp protease AWJ11_08030 PF00762 Ferrochelatase AWJ11_08040 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AWJ11_08045 PF00005 ABC transporter AWJ11_08045 PF00664 ABC transporter transmembrane region AWJ11_08050 PF02472 Biopolymer transport protein ExbD/TolR AWJ11_08055 PF01618 MotA/TolQ/ExbB proton channel family AWJ11_08060 PF11412 Disulphide bond corrector protein DsbC AWJ11_08060 PF02683 Cytochrome C biogenesis protein transmembrane region AWJ11_08065 PF13936 Helix-turn-helix domain AWJ11_08065 PF00665 Integrase core domain AWJ11_08080 PF13276 HTH-like domain AWJ11_08080 PF13333 Integrase core domain AWJ11_08080 PF00665 Integrase core domain AWJ11_08090 PF00753 Metallo-beta-lactamase superfamily AWJ11_08090 PF03772 Competence protein AWJ11_08110 PF13276 HTH-like domain AWJ11_08110 PF00665 Integrase core domain AWJ11_08110 PF13333 Integrase core domain AWJ11_08120 PF00753 Metallo-beta-lactamase superfamily AWJ11_08120 PF03772 Competence protein AWJ11_08135 PF00665 Integrase core domain AWJ11_08135 PF13936 Helix-turn-helix domain AWJ11_08140 PF03772 Competence protein AWJ11_08140 PF13567 Domain of unknown function (DUF4131) AWJ11_08140 PF00753 Metallo-beta-lactamase superfamily AWJ11_08150 PF03466 LysR substrate binding domain AWJ11_08150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AWJ11_08155 PF08239 Bacterial SH3 domain AWJ11_08155 PF00069 Protein kinase domain AWJ11_08175 PF00271 Helicase conserved C-terminal domain AWJ11_08175 PF00270 DEAD/DEAH box helicase AWJ11_08180 PF18027 Cytosolic carboxypeptidase N-terminal domain AWJ11_08180 PF00246 Zinc carboxypeptidase AWJ11_08185 PF01914 MarC family integral membrane protein AWJ11_08205 PF01810 LysE type translocator AWJ11_08220 PF01223 DNA/RNA non-specific endonuclease AWJ11_08225 PF03793 PASTA domain AWJ11_08225 PF00069 Protein kinase domain AWJ11_08240 PF01709 Transcriptional regulator AWJ11_08245 PF02445 Quinolinate synthetase A protein AWJ11_08250 PF02938 GAD domain AWJ11_08250 PF00152 tRNA synthetases class II (D, K and N) AWJ11_08250 PF01336 OB-fold nucleic acid binding domain AWJ11_08255 PF07690 Major Facilitator Superfamily AWJ11_08260 PF17760 UvrA interaction domain AWJ11_08260 PF17755 UvrA DNA-binding domain AWJ11_08265 PF00436 Single-strand binding protein family AWJ11_08285 PF00665 Integrase core domain AWJ11_08285 PF13276 HTH-like domain AWJ11_08285 PF13333 Integrase core domain AWJ11_08295 PF01527 Transposase AWJ11_08300 PF12762 ISXO2-like transposase domain AWJ11_08310 PF04986 Putative transposase AWJ11_08310 PF14319 Transposase zinc-binding domain AWJ11_08315 PF00665 Integrase core domain AWJ11_08315 PF13936 Helix-turn-helix domain AWJ11_08345 PF08239 Bacterial SH3 domain AWJ11_08345 PF00069 Protein kinase domain AWJ11_08355 PF01740 STAS domain AWJ11_08355 PF00916 Sulfate permease family AWJ11_08370 PF01464 Transglycosylase SLT domain AWJ11_08370 PF14718 Soluble lytic murein transglycosylase L domain AWJ11_08375 PF00665 Integrase core domain AWJ11_08375 PF13936 Helix-turn-helix domain AWJ11_08390 PF03880 DbpA RNA binding domain AWJ11_08390 PF00270 DEAD/DEAH box helicase AWJ11_08390 PF00271 Helicase conserved C-terminal domain AWJ11_08395 PF00375 Sodium:dicarboxylate symporter family AWJ11_08450 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AWJ11_08480 PF01527 Transposase AWJ11_08490 PF13276 HTH-like domain AWJ11_08490 PF00665 Integrase core domain AWJ11_08490 PF13333 Integrase core domain AWJ11_08525 PF00665 Integrase core domain AWJ11_08525 PF13936 Helix-turn-helix domain AWJ11_08535 PF02322 Cytochrome bd terminal oxidase subunit II AWJ11_08540 PF01654 Cytochrome bd terminal oxidase subunit I AWJ11_08570 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AWJ11_08580 PF00999 Sodium/hydrogen exchanger family AWJ11_08610 PF01609 Transposase DDE domain AWJ11_08620 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AWJ11_08630 PF00398 Ribosomal RNA adenine dimethylase AWJ11_08645 PF13333 Integrase core domain AWJ11_08645 PF00665 Integrase core domain AWJ11_08645 PF13276 HTH-like domain AWJ11_08650 PF01527 Transposase AWJ11_08670 PF01406 tRNA synthetases class I (C) catalytic domain AWJ11_08670 PF09190 DALR domain AWJ11_08675 PF00749 tRNA synthetases class I (E and Q), catalytic domain AWJ11_08680 PF00149 Calcineurin-like phosphoesterase AWJ11_08685 PF00072 Response regulator receiver domain AWJ11_08685 PF01584 CheW-like domain AWJ11_08690 PF00561 alpha/beta hydrolase fold AWJ11_08700 PF00270 DEAD/DEAH box helicase AWJ11_08700 PF04408 Helicase associated domain (HA2) AWJ11_08700 PF11898 Domain of unknown function (DUF3418) AWJ11_08700 PF00271 Helicase conserved C-terminal domain AWJ11_08700 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AWJ11_08705 PF13614 AAA domain AWJ11_08715 PF03060 Nitronate monooxygenase AWJ11_08730 PF08659 KR domain AWJ11_08730 PF16197 Ketoacyl-synthetase C-terminal extension AWJ11_08730 PF00550 Phosphopantetheine attachment site AWJ11_08730 PF14765 Polyketide synthase dehydratase AWJ11_08730 PF08240 Alcohol dehydrogenase GroES-like domain AWJ11_08730 PF02801 Beta-ketoacyl synthase, C-terminal domain AWJ11_08730 PF00698 Acyl transferase domain AWJ11_08730 PF00107 Zinc-binding dehydrogenase AWJ11_08730 PF00109 Beta-ketoacyl synthase, N-terminal domain AWJ11_08750 PF01527 Transposase AWJ11_08755 PF01584 CheW-like domain AWJ11_08755 PF00072 Response regulator receiver domain AWJ11_08760 PF03960 ArsC family AWJ11_08765 PF03358 NADPH-dependent FMN reductase AWJ11_08770 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AWJ11_08770 PF01189 16S rRNA methyltransferase RsmB/F AWJ11_08770 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AWJ11_08790 PF13276 HTH-like domain AWJ11_08790 PF00665 Integrase core domain AWJ11_08790 PF13333 Integrase core domain AWJ11_08805 PF17126 RsmF rRNA methyltransferase first C-terminal domain AWJ11_08805 PF01189 16S rRNA methyltransferase RsmB/F AWJ11_08805 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AWJ11_08830 PF00873 AcrB/AcrD/AcrF family AWJ11_08835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AWJ11_08840 PF01207 Dihydrouridine synthase (Dus) AWJ11_08850 PF01103 Surface antigen AWJ11_08850 PF17243 POTRA domain TamA domain 1 AWJ11_08850 PF07244 Surface antigen variable number repeat AWJ11_08865 PF17969 L,D-transpeptidase C-terminal domain AWJ11_08865 PF01476 LysM domain AWJ11_08865 PF03734 L,D-transpeptidase catalytic domain AWJ11_08980 PF13276 HTH-like domain AWJ11_08980 PF00665 Integrase core domain AWJ11_08980 PF13333 Integrase core domain AWJ11_08985 PF01527 Transposase AWJ11_08995 PF13936 Helix-turn-helix domain AWJ11_08995 PF00665 Integrase core domain AWJ11_09000 PF01609 Transposase DDE domain AWJ11_09025 PF00873 AcrB/AcrD/AcrF family AWJ11_09030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AWJ11_09035 PF13505 Outer membrane protein beta-barrel domain AWJ11_09070 PF01809 Putative membrane protein insertion efficiency factor AWJ11_09075 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AWJ11_09080 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AWJ11_09080 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AWJ11_09085 PF06508 Queuosine biosynthesis protein QueC AWJ11_09095 PF00155 Aminotransferase class I and II AWJ11_09095 PF00392 Bacterial regulatory proteins, gntR family AWJ11_09105 PF00378 Enoyl-CoA hydratase/isomerase AWJ11_09115 PF16671 Actin cross-linking domain AWJ11_09115 PF04717 Type VI secretion system, phage-baseplate injector AWJ11_09130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AWJ11_09130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AWJ11_09130 PF09317 Domain of unknown function (DUF1974) AWJ11_09135 PF00108 Thiolase, N-terminal domain AWJ11_09135 PF02803 Thiolase, C-terminal domain AWJ11_09140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AWJ11_09140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AWJ11_09140 PF00378 Enoyl-CoA hydratase/isomerase AWJ11_09160 PF13333 Integrase core domain AWJ11_09160 PF00665 Integrase core domain AWJ11_09160 PF13276 HTH-like domain AWJ11_09165 PF01527 Transposase AWJ11_09170 PF13276 HTH-like domain AWJ11_09170 PF00665 Integrase core domain AWJ11_09170 PF13333 Integrase core domain AWJ11_09185 PF03717 Penicillin-binding Protein dimerisation domain AWJ11_09185 PF00905 Penicillin binding protein transpeptidase domain AWJ11_09190 PF00005 ABC transporter AWJ11_09195 PF02687 FtsX-like permease family AWJ11_09195 PF12704 MacB-like periplasmic core domain AWJ11_09200 PF04371 Porphyromonas-type peptidyl-arginine deiminase AWJ11_09205 PF00795 Carbon-nitrogen hydrolase AWJ11_09215 PF00271 Helicase conserved C-terminal domain AWJ11_09215 PF00270 DEAD/DEAH box helicase AWJ11_09215 PF17757 UvrB interaction domain AWJ11_09215 PF03461 TRCF domain AWJ11_09215 PF02559 CarD-like/TRCF domain AWJ11_09230 PF13936 Helix-turn-helix domain AWJ11_09230 PF00665 Integrase core domain AWJ11_09245 PF00692 dUTPase AWJ11_09250 PF10609 NUBPL iron-transfer P-loop NTPase AWJ11_09260 PF02080 TrkA-C domain AWJ11_09260 PF02254 TrkA-N domain AWJ11_09260 PF00999 Sodium/hydrogen exchanger family AWJ11_09275 PF01609 Transposase DDE domain AWJ11_09310 PF00665 Integrase core domain AWJ11_09310 PF13936 Helix-turn-helix domain AWJ11_09345 PF00849 RNA pseudouridylate synthase AWJ11_09345 PF01479 S4 domain AWJ11_09350 PF13525 Outer membrane lipoprotein AWJ11_09400 PF00106 short chain dehydrogenase AWJ11_09405 PF13936 Helix-turn-helix domain AWJ11_09405 PF00665 Integrase core domain AWJ11_09410 PF00106 short chain dehydrogenase AWJ11_09425 PF03631 Virulence factor BrkB AWJ11_09445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AWJ11_09445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AWJ11_09460 PF13276 HTH-like domain AWJ11_09460 PF13333 Integrase core domain AWJ11_09460 PF00665 Integrase core domain AWJ11_09465 PF01527 Transposase AWJ11_09500 PF13276 HTH-like domain AWJ11_09500 PF13333 Integrase core domain AWJ11_09500 PF00665 Integrase core domain AWJ11_09525 PF07055 Enoyl reductase FAD binding domain AWJ11_09525 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AWJ11_09525 PF12241 Trans-2-enoyl-CoA reductase catalytic region AWJ11_09580 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AWJ11_09580 PF00460 Flagella basal body rod protein AWJ11_09590 PF02119 Flagellar P-ring protein AWJ11_09595 PF02107 Flagellar L-ring protein AWJ11_09600 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AWJ11_09600 PF00460 Flagella basal body rod protein AWJ11_09605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AWJ11_09605 PF00460 Flagella basal body rod protein AWJ11_09610 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AWJ11_09610 PF00460 Flagella basal body rod protein AWJ11_09610 PF07559 Flagellar basal body protein FlaE AWJ11_09615 PF13860 FlgD Ig-like domain AWJ11_09615 PF03963 Flagellar hook capping protein - N-terminal region AWJ11_09615 PF13861 FlgD Tudor-like domain AWJ11_09620 PF00460 Flagella basal body rod protein AWJ11_09620 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AWJ11_09645 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AWJ11_09670 PF05690 Thiazole biosynthesis protein ThiG AWJ11_09680 PF01266 FAD dependent oxidoreductase AWJ11_09685 PF13193 AMP-binding enzyme C-terminal domain AWJ11_09685 PF00501 AMP-binding enzyme AWJ11_09685 PF16177 Acetyl-coenzyme A synthetase N-terminus AWJ11_09690 PF13520 Amino acid permease AWJ11_09705 PF00486 Transcriptional regulatory protein, C terminal AWJ11_09705 PF00072 Response regulator receiver domain AWJ11_09710 PF00512 His Kinase A (phospho-acceptor) domain AWJ11_09710 PF08521 Two-component sensor kinase N-terminal AWJ11_09710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AWJ11_09715 PF13276 HTH-like domain AWJ11_09715 PF13333 Integrase core domain AWJ11_09715 PF00665 Integrase core domain AWJ11_09720 PF01527 Transposase AWJ11_09745 PF13936 Helix-turn-helix domain AWJ11_09745 PF00665 Integrase core domain AWJ11_09765 PF03960 ArsC family AWJ11_09770 PF01546 Peptidase family M20/M25/M40 AWJ11_09770 PF07687 Peptidase dimerisation domain AWJ11_09775 PF04960 Glutaminase AWJ11_09780 PF01648 4'-phosphopantetheinyl transferase superfamily AWJ11_09785 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AWJ11_09790 PF11967 Recombination protein O N terminal AWJ11_09790 PF02565 Recombination protein O C terminal AWJ11_09795 PF01926 50S ribosome-binding GTPase AWJ11_09795 PF07650 KH domain AWJ11_09800 PF14622 Ribonuclease-III-like AWJ11_09800 PF00035 Double-stranded RNA binding motif AWJ11_09810 PF10502 Signal peptidase, peptidase S26 AWJ11_09815 PF06421 GTP-binding protein LepA C-terminus AWJ11_09815 PF03144 Elongation factor Tu domain 2 AWJ11_09815 PF00679 Elongation factor G C-terminus AWJ11_09815 PF00009 Elongation factor Tu GTP binding domain AWJ11_09820 PF04542 Sigma-70 region 2 AWJ11_09820 PF08281 Sigma-70, region 4 AWJ11_09825 PF00890 FAD binding domain AWJ11_09825 PF02910 Fumarate reductase flavoprotein C-term AWJ11_09835 PF03937 Flavinator of succinate dehydrogenase AWJ11_09855 PF00893 Small Multidrug Resistance protein AWJ11_09865 PF00665 Integrase core domain AWJ11_09865 PF13936 Helix-turn-helix domain AWJ11_09870 PF00665 Integrase core domain AWJ11_09870 PF13333 Integrase core domain AWJ11_09870 PF13276 HTH-like domain AWJ11_09875 PF01527 Transposase AWJ11_09920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AWJ11_09920 PF03466 LysR substrate binding domain AWJ11_09925 PF06733 DEAD_2 AWJ11_09925 PF13307 Helicase C-terminal domain AWJ11_09945 PF00216 Bacterial DNA-binding protein AWJ11_09950 PF16998 17 kDa outer membrane surface antigen AWJ11_09950 PF05433 Glycine zipper 2TM domain AWJ11_09955 PF18073 Rubredoxin metal binding domain AWJ11_09965 PF00842 Alanine racemase, C-terminal domain AWJ11_09965 PF01168 Alanine racemase, N-terminal domain AWJ11_09970 PF03796 DnaB-like helicase C terminal domain AWJ11_09970 PF00772 DnaB-like helicase N terminal domain AWJ11_09975 PF03948 Ribosomal protein L9, C-terminal domain AWJ11_09975 PF01281 Ribosomal protein L9, N-terminal domain AWJ11_09980 PF01084 Ribosomal protein S18 AWJ11_09985 PF01250 Ribosomal protein S6 AWJ11_10000 PF01761 3-dehydroquinate synthase AWJ11_10005 PF01264 Chorismate synthase AWJ11_10010 PF01202 Shikimate kinase AWJ11_10025 PF13737 Transposase DDE domain AWJ11_10055 PF00665 Integrase core domain AWJ11_10055 PF13936 Helix-turn-helix domain AWJ11_10065 PF01527 Transposase AWJ11_10070 PF13333 Integrase core domain AWJ11_10070 PF00665 Integrase core domain AWJ11_10070 PF13276 HTH-like domain AWJ11_10095 PF01609 Transposase DDE domain AWJ11_10110 PF00580 UvrD/REP helicase N-terminal domain AWJ11_10110 PF12705 PD-(D/E)XK nuclease superfamily AWJ11_10110 PF13361 UvrD-like helicase C-terminal domain AWJ11_10120 PF00083 Sugar (and other) transporter AWJ11_10165 PF13276 HTH-like domain AWJ11_10165 PF00665 Integrase core domain AWJ11_10165 PF13333 Integrase core domain AWJ11_10170 PF01527 Transposase AWJ11_10185 PF00180 Isocitrate/isopropylmalate dehydrogenase AWJ11_10195 PF00691 OmpA family AWJ11_10195 PF13677 Membrane MotB of proton-channel complex MotA/MotB AWJ11_10200 PF01618 MotA/TolQ/ExbB proton channel family AWJ11_10205 PF00348 Polyprenyl synthetase AWJ11_10210 PF02649 Type I GTP cyclohydrolase folE2 AWJ11_10260 PF01609 Transposase DDE domain AWJ11_10280 PF01527 Transposase AWJ11_10355 PF01740 STAS domain AWJ11_10360 PF13610 DDE domain AWJ11_10370 PF13519 von Willebrand factor type A domain AWJ11_10370 PF07584 Aerotolerance regulator N-terminal AWJ11_10375 PF13936 Helix-turn-helix domain AWJ11_10375 PF00665 Integrase core domain AWJ11_10390 PF01882 Protein of unknown function DUF58 AWJ11_10395 PF07726 ATPase family associated with various cellular activities (AAA) AWJ11_10395 PF17863 AAA lid domain AWJ11_10400 PF08240 Alcohol dehydrogenase GroES-like domain AWJ11_10400 PF00107 Zinc-binding dehydrogenase AWJ11_10415 PF13610 DDE domain AWJ11_10440 PF02583 Metal-sensitive transcriptional repressor AWJ11_10455 PF13936 Helix-turn-helix domain AWJ11_10455 PF00665 Integrase core domain AWJ11_10470 PF13610 DDE domain AWJ11_10475 PF01527 Transposase AWJ11_10480 PF01609 Transposase DDE domain AWJ11_10485 PF13333 Integrase core domain AWJ11_10485 PF00665 Integrase core domain AWJ11_10485 PF13276 HTH-like domain AWJ11_10525 PF13333 Integrase core domain AWJ11_10525 PF00665 Integrase core domain AWJ11_10525 PF13276 HTH-like domain AWJ11_10540 PF00027 Cyclic nucleotide-binding domain AWJ11_10540 PF00325 Bacterial regulatory proteins, crp family AWJ11_10560 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AWJ11_10560 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AWJ11_10565 PF00005 ABC transporter AWJ11_10575 PF00665 Integrase core domain AWJ11_10575 PF13333 Integrase core domain AWJ11_10575 PF13276 HTH-like domain AWJ11_10585 PF13276 HTH-like domain AWJ11_10585 PF00665 Integrase core domain AWJ11_10595 PF13276 HTH-like domain AWJ11_10595 PF00665 Integrase core domain AWJ11_10595 PF13333 Integrase core domain AWJ11_10625 PF01584 CheW-like domain AWJ11_10625 PF00072 Response regulator receiver domain AWJ11_10640 PF13936 Helix-turn-helix domain AWJ11_10640 PF00665 Integrase core domain AWJ11_10665 PF03458 UPF0126 domain AWJ11_10670 PF01555 DNA methylase AWJ11_10675 PF02657 Fe-S metabolism associated domain AWJ11_10690 PF00665 Integrase core domain AWJ11_10690 PF13333 Integrase core domain AWJ11_10690 PF13276 HTH-like domain AWJ11_10695 PF01527 Transposase AWJ11_10720 PF00512 His Kinase A (phospho-acceptor) domain AWJ11_10720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AWJ11_10720 PF00672 HAMP domain AWJ11_10720 PF16527 Two-component sensor protein CpxA, periplasmic domain AWJ11_10725 PF00072 Response regulator receiver domain AWJ11_10725 PF00486 Transcriptional regulatory protein, C terminal AWJ11_10745 PF02545 Maf-like protein AWJ11_10750 PF06965 Na+/H+ antiporter 1 AWJ11_10750 PF01343 Peptidase family S49 AWJ11_10760 PF06965 Na+/H+ antiporter 1 AWJ11_10765 PF05088 Bacterial NAD-glutamate dehydrogenase AWJ11_10775 PF08298 PrkA AAA domain AWJ11_10775 PF06798 PrkA serine protein kinase C-terminal domain AWJ11_10780 PF04285 Protein of unknown function (DUF444) AWJ11_10785 PF04293 SpoVR like protein AWJ11_10795 PF02163 Peptidase family M50 AWJ11_10805 PF00814 Glycoprotease family AWJ11_10810 PF13505 Outer membrane protein beta-barrel domain AWJ11_10825 PF14489 QueF-like protein AWJ11_10825 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AWJ11_10830 PF01050 Mannose-6-phosphate isomerase AWJ11_10830 PF00483 Nucleotidyl transferase AWJ11_10835 PF00480 ROK family AWJ11_10840 PF13419 Haloacid dehalogenase-like hydrolase AWJ11_10850 PF06472 ABC transporter transmembrane region 2 AWJ11_10850 PF00005 ABC transporter AWJ11_10860 PF10576 Iron-sulfur binding domain of endonuclease III AWJ11_10860 PF00633 Helix-hairpin-helix motif AWJ11_10860 PF00730 HhH-GPD superfamily base excision DNA repair protein AWJ11_10860 PF14815 NUDIX domain AWJ11_10865 PF04362 Bacterial Fe(2+) trafficking AWJ11_10870 PF01609 Transposase DDE domain AWJ11_10885 PF13333 Integrase core domain AWJ11_10885 PF00665 Integrase core domain AWJ11_10885 PF13276 HTH-like domain AWJ11_10890 PF01527 Transposase AWJ11_10935 PF04996 Succinylarginine dihydrolase AWJ11_10945 PF04958 Arginine N-succinyltransferase beta subunit AWJ11_10950 PF00270 DEAD/DEAH box helicase AWJ11_10950 PF00271 Helicase conserved C-terminal domain AWJ11_10950 PF17191 RecG wedge domain AWJ11_10955 PF03061 Thioesterase superfamily AWJ11_10960 PF03725 3' exoribonuclease family, domain 2 AWJ11_10960 PF01138 3' exoribonuclease family, domain 1 AWJ11_10965 PF03755 YicC-like family, N-terminal region AWJ11_10965 PF08340 Domain of unknown function (DUF1732) AWJ11_10970 PF00625 Guanylate kinase AWJ11_10975 PF01192 RNA polymerase Rpb6 AWJ11_10980 PF13291 ACT domain AWJ11_10980 PF04607 Region found in RelA / SpoT proteins AWJ11_10980 PF02824 TGS domain AWJ11_11000 PF00990 Diguanylate cyclase, GGDEF domain AWJ11_11005 PF00083 Sugar (and other) transporter AWJ11_11005 PF08946 Osmosensory transporter coiled coil AWJ11_11010 PF00665 Integrase core domain AWJ11_11010 PF13936 Helix-turn-helix domain AWJ11_11025 PF01609 Transposase DDE domain AWJ11_11040 PF07690 Major Facilitator Superfamily AWJ11_11045 PF00665 Integrase core domain AWJ11_11045 PF13276 HTH-like domain AWJ11_11045 PF13333 Integrase core domain AWJ11_11070 PF00586 AIR synthase related protein, N-terminal domain AWJ11_11070 PF02769 AIR synthase related protein, C-terminal domain AWJ11_11075 PF01029 NusB family AWJ11_11080 PF00885 6,7-dimethyl-8-ribityllumazine synthase AWJ11_11085 PF00925 GTP cyclohydrolase II AWJ11_11085 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AWJ11_11090 PF00677 Lumazine binding domain AWJ11_11095 PF01872 RibD C-terminal domain AWJ11_11095 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AWJ11_11100 PF03477 ATP cone domain AWJ11_11105 PF00464 Serine hydroxymethyltransferase AWJ11_11110 PF12848 ABC transporter AWJ11_11110 PF00005 ABC transporter AWJ11_11145 PF13936 Helix-turn-helix domain AWJ11_11145 PF00665 Integrase core domain AWJ11_11155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AWJ11_11170 PF00575 S1 RNA binding domain AWJ11_11180 PF02224 Cytidylate kinase AWJ11_11185 PF00266 Aminotransferase class-V AWJ11_11190 PF03989 DNA gyrase C-terminal domain, beta-propeller AWJ11_11190 PF00521 DNA gyrase/topoisomerase IV, subunit A AWJ11_11195 PF12762 ISXO2-like transposase domain AWJ11_11200 PF01979 Amidohydrolase family AWJ11_11210 PF13419 Haloacid dehalogenase-like hydrolase AWJ11_11215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AWJ11_11225 PF01758 Sodium Bile acid symporter family AWJ11_11255 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AWJ11_11255 PF00117 Glutamine amidotransferase class-I AWJ11_11260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AWJ11_11260 PF02142 MGS-like domain AWJ11_11260 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AWJ11_11265 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AWJ11_11265 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AWJ11_11270 PF00156 Phosphoribosyl transferase domain AWJ11_11280 PF17871 AAA lid domain AWJ11_11280 PF10431 C-terminal, D2-small domain, of ClpB protein AWJ11_11280 PF02861 Clp amino terminal domain, pathogenicity island component AWJ11_11280 PF07724 AAA domain (Cdc48 subfamily) AWJ11_11280 PF00004 ATPase family associated with various cellular activities (AAA) AWJ11_11285 PF13091 PLD-like domain AWJ11_11315 PF07690 Major Facilitator Superfamily AWJ11_11325 PF04060 Putative Fe-S cluster AWJ11_11330 PF00730 HhH-GPD superfamily base excision DNA repair protein AWJ11_11330 PF00633 Helix-hairpin-helix motif AWJ11_11330 PF10576 Iron-sulfur binding domain of endonuclease III AWJ11_11370 PF01027 Inhibitor of apoptosis-promoting Bax1 AWJ11_11375 PF02635 DsrE/DsrF-like family AWJ11_11380 PF02635 DsrE/DsrF-like family AWJ11_11390 PF04358 DsrC like protein AWJ11_11395 PF01914 MarC family integral membrane protein AWJ11_11425 PF13411 MerR HTH family regulatory protein AWJ11_11430 PF04445 Putative SAM-dependent methyltransferase AWJ11_11445 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AWJ11_11445 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AWJ11_11480 PF01869 BadF/BadG/BcrA/BcrD ATPase family AWJ11_11485 PF00083 Sugar (and other) transporter AWJ11_11490 PF01380 SIS domain AWJ11_11495 PF02082 Transcriptional regulator AWJ11_11500 PF00970 Oxidoreductase FAD-binding domain AWJ11_11500 PF00175 Oxidoreductase NAD-binding domain AWJ11_11500 PF00042 Globin AWJ11_11505 PF00196 Bacterial regulatory proteins, luxR family AWJ11_11505 PF00072 Response regulator receiver domain AWJ11_11515 PF00892 EamA-like transporter family AWJ11_11535 PF00551 Formyl transferase AWJ11_11540 PF00586 AIR synthase related protein, N-terminal domain AWJ11_11540 PF02769 AIR synthase related protein, C-terminal domain AWJ11_11550 PF01594 AI-2E family transporter AWJ11_11555 PF00893 Small Multidrug Resistance protein AWJ11_11560 PF00893 Small Multidrug Resistance protein AWJ11_11575 PF17676 LD-carboxypeptidase C-terminal domain AWJ11_11575 PF02016 LD-carboxypeptidase N-terminal domain AWJ11_11585 PF01609 Transposase DDE domain AWJ11_11595 PF01527 Transposase AWJ11_11600 PF00665 Integrase core domain AWJ11_11600 PF13276 HTH-like domain AWJ11_11600 PF13333 Integrase core domain AWJ11_11635 PF01609 Transposase DDE domain AWJ11_11655 PF07690 Major Facilitator Superfamily AWJ11_11660 PF05175 Methyltransferase small domain AWJ11_11660 PF17827 PrmC N-terminal domain AWJ11_11665 PF00472 RF-1 domain AWJ11_11665 PF03462 PCRF domain AWJ11_11680 PF03550 Outer membrane lipoprotein LolB AWJ11_11690 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AWJ11_11690 PF14572 Phosphoribosyl synthetase-associated domain AWJ11_11695 PF14693 Ribosomal protein TL5, C-terminal domain AWJ11_11695 PF01386 Ribosomal L25p family AWJ11_11700 PF01195 Peptidyl-tRNA hydrolase AWJ11_11705 PF06071 Protein of unknown function (DUF933) AWJ11_11705 PF01926 50S ribosome-binding GTPase AWJ11_11710 PF01048 Phosphorylase superfamily AWJ11_11715 PF08241 Methyltransferase domain AWJ11_11725 PF13333 Integrase core domain AWJ11_11725 PF00665 Integrase core domain AWJ11_11725 PF13276 HTH-like domain AWJ11_11740 PF00665 Integrase core domain AWJ11_11740 PF13936 Helix-turn-helix domain AWJ11_11755 PF01609 Transposase DDE domain AWJ11_11775 PF00854 POT family AWJ11_11780 PF01527 Transposase AWJ11_11785 PF00665 Integrase core domain AWJ11_11785 PF13333 Integrase core domain AWJ11_11785 PF13276 HTH-like domain AWJ11_11790 PF00854 POT family AWJ11_11795 PF02347 Glycine cleavage system P-protein AWJ11_11800 PF02347 Glycine cleavage system P-protein AWJ11_11805 PF01597 Glycine cleavage H-protein AWJ11_11810 PF01571 Aminomethyltransferase folate-binding domain AWJ11_11810 PF08669 Glycine cleavage T-protein C-terminal barrel domain AWJ11_11815 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AWJ11_11820 PF01370 NAD dependent epimerase/dehydratase family AWJ11_11825 PF00535 Glycosyl transferase family 2 AWJ11_11830 PF00535 Glycosyl transferase family 2 AWJ11_11835 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AWJ11_11840 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AWJ11_11850 PF08335 GlnD PII-uridylyltransferase AWJ11_11850 PF03710 Glutamate-ammonia ligase adenylyltransferase AWJ11_11855 PF01040 UbiA prenyltransferase family AWJ11_11860 PF04345 Chorismate lyase AWJ11_11880 PF13183 4Fe-4S dicluster domain AWJ11_11880 PF01565 FAD binding domain AWJ11_11880 PF02913 FAD linked oxidases, C-terminal domain AWJ11_11885 PF01541 GIY-YIG catalytic domain AWJ11_11910 PF13936 Helix-turn-helix domain AWJ11_11910 PF00665 Integrase core domain AWJ11_11915 PF00486 Transcriptional regulatory protein, C terminal AWJ11_11915 PF00072 Response regulator receiver domain AWJ11_11920 PF00512 His Kinase A (phospho-acceptor) domain AWJ11_11920 PF00989 PAS fold AWJ11_11920 PF11808 Phosphate regulon sensor protein PhoR AWJ11_11920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AWJ11_11940 PF13333 Integrase core domain AWJ11_11940 PF13276 HTH-like domain AWJ11_11940 PF00665 Integrase core domain AWJ11_11945 PF01609 Transposase DDE domain AWJ11_11950 PF01527 Transposase AWJ11_11955 PF00665 Integrase core domain AWJ11_11955 PF13276 HTH-like domain AWJ11_11955 PF13333 Integrase core domain AWJ11_11960 PF00665 Integrase core domain AWJ11_11960 PF13936 Helix-turn-helix domain AWJ11_11970 PF13333 Integrase core domain AWJ11_11970 PF13276 HTH-like domain AWJ11_11970 PF00665 Integrase core domain AWJ11_11975 PF01527 Transposase AWJ11_11980 PF02223 Thymidylate kinase AWJ11_11985 PF02618 YceG-like family AWJ11_11990 PF01063 Amino-transferase class IV AWJ11_11995 PF00109 Beta-ketoacyl synthase, N-terminal domain AWJ11_11995 PF02801 Beta-ketoacyl synthase, C-terminal domain AWJ11_12000 PF00550 Phosphopantetheine attachment site AWJ11_12010 PF00698 Acyl transferase domain AWJ11_12015 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AWJ11_12015 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AWJ11_12020 PF02504 Fatty acid synthesis protein AWJ11_12025 PF01783 Ribosomal L32p protein family AWJ11_12035 PF04972 BON domain AWJ11_12040 PF00561 alpha/beta hydrolase fold AWJ11_12040 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AWJ11_12065 PF03167 Uracil DNA glycosylase superfamily AWJ11_12075 PF01784 NIF3 (NGG1p interacting factor 3) AWJ11_12080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AWJ11_12100 PF02470 MlaD protein AWJ11_12105 PF02405 Permease MlaE AWJ11_12110 PF00005 ABC transporter AWJ11_12115 PF01380 SIS domain AWJ11_12115 PF00571 CBS domain AWJ11_12130 PF12399 Branched-chain amino acid ATP-binding cassette transporter AWJ11_12130 PF00005 ABC transporter AWJ11_12135 PF04552 Sigma-54, DNA binding domain AWJ11_12135 PF00309 Sigma-54 factor, Activator interacting domain (AID) AWJ11_12135 PF04963 Sigma-54 factor, core binding domain AWJ11_12140 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AWJ11_12145 PF03668 P-loop ATPase protein family AWJ11_12155 PF00795 Carbon-nitrogen hydrolase AWJ11_12160 PF03232 Ubiquinone biosynthesis protein COQ7 AWJ11_12170 PF01584 CheW-like domain AWJ11_12170 PF00072 Response regulator receiver domain AWJ11_12260 PF02675 S-adenosylmethionine decarboxylase AWJ11_12265 PF00117 Glutamine amidotransferase class-I AWJ11_12270 PF00834 Ribulose-phosphate 3 epimerase family AWJ11_12280 PF00486 Transcriptional regulatory protein, C terminal AWJ11_12280 PF00072 Response regulator receiver domain AWJ11_12285 PF00226 DnaJ domain AWJ11_12285 PF05099 Tellurite resistance protein TerB AWJ11_12295 PF01636 Phosphotransferase enzyme family AWJ11_12300 PF04453 LPS transport system D AWJ11_12300 PF03968 OstA-like protein AWJ11_12305 PF00639 PPIC-type PPIASE domain AWJ11_12305 PF09312 SurA N-terminal domain AWJ11_12315 PF00398 Ribosomal RNA adenine dimethylase AWJ11_12320 PF04379 ApaG domain AWJ11_12325 PF00149 Calcineurin-like phosphoesterase AWJ11_12335 PF00665 Integrase core domain AWJ11_12335 PF13936 Helix-turn-helix domain AWJ11_12345 PF01609 Transposase DDE domain AWJ11_12350 PF00665 Integrase core domain AWJ11_12350 PF13333 Integrase core domain AWJ11_12350 PF13276 HTH-like domain AWJ11_12365 PF00795 Carbon-nitrogen hydrolase AWJ11_12370 PF00571 CBS domain AWJ11_12370 PF03471 Transporter associated domain AWJ11_12375 PF02130 Uncharacterized protein family UPF0054 AWJ11_12380 PF02562 PhoH-like protein AWJ11_12385 PF01938 TRAM domain AWJ11_12385 PF00919 Uncharacterized protein family UPF0004 AWJ11_12385 PF04055 Radical SAM superfamily AWJ11_12390 PF01743 Poly A polymerase head domain AWJ11_12390 PF12627 Probable RNA and SrmB- binding site of polymerase A AWJ11_12390 PF01966 HD domain AWJ11_12400 PF00665 Integrase core domain AWJ11_12400 PF13936 Helix-turn-helix domain AWJ11_12435 PF07662 Na+ dependent nucleoside transporter C-terminus AWJ11_12435 PF01773 Na+ dependent nucleoside transporter N-terminus AWJ11_12440 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AWJ11_12445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AWJ11_12445 PF00005 ABC transporter AWJ11_12450 PF00005 ABC transporter AWJ11_12450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AWJ11_12455 PF00528 Binding-protein-dependent transport system inner membrane component AWJ11_12455 PF12911 N-terminal TM domain of oligopeptide transport permease C AWJ11_12460 PF00528 Binding-protein-dependent transport system inner membrane component AWJ11_12465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AWJ11_12470 PF01842 ACT domain AWJ11_12470 PF00696 Amino acid kinase family AWJ11_12470 PF13840 ACT domain AWJ11_12475 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AWJ11_12475 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AWJ11_12480 PF01042 Endoribonuclease L-PSP AWJ11_12490 PF01370 NAD dependent epimerase/dehydratase family AWJ11_12490 PF00551 Formyl transferase AWJ11_12490 PF02911 Formyl transferase, C-terminal domain AWJ11_12495 PF00535 Glycosyl transferase family 2 AWJ11_12500 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AWJ11_12505 PF00893 Small Multidrug Resistance protein AWJ11_12510 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AWJ11_12515 PF12105 SpoU, rRNA methylase, C-terminal AWJ11_12515 PF00588 SpoU rRNA Methylase family AWJ11_12520 PF01042 Endoribonuclease L-PSP AWJ11_12525 PF00072 Response regulator receiver domain AWJ11_12580 PF01609 Transposase DDE domain AWJ11_12585 PF00528 Binding-protein-dependent transport system inner membrane component AWJ11_12585 PF12911 N-terminal TM domain of oligopeptide transport permease C AWJ11_12595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AWJ11_12595 PF00005 ABC transporter AWJ11_12605 PF00075 RNase H AWJ11_12615 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AWJ11_12630 PF01609 Transposase DDE domain AWJ11_12640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AWJ11_12650 PF13276 HTH-like domain AWJ11_12650 PF13333 Integrase core domain AWJ11_12650 PF00665 Integrase core domain AWJ11_12675 PF00462 Glutaredoxin AWJ11_12685 PF00521 DNA gyrase/topoisomerase IV, subunit A AWJ11_12685 PF03989 DNA gyrase C-terminal domain, beta-propeller AWJ11_12690 PF01180 Dihydroorotate dehydrogenase AWJ11_12700 PF02540 NAD synthase AWJ11_12700 PF00795 Carbon-nitrogen hydrolase AWJ11_12730 PF00403 Heavy-metal-associated domain AWJ11_12735 PF00403 Heavy-metal-associated domain AWJ11_12740 PF00403 Heavy-metal-associated domain AWJ11_12765 PF01327 Polypeptide deformylase AWJ11_12770 PF00854 POT family AWJ11_12775 PF00072 Response regulator receiver domain AWJ11_12775 PF01584 CheW-like domain AWJ11_12780 PF01594 AI-2E family transporter AWJ11_12785 PF01206 Sulfurtransferase TusA AWJ11_12860 PF07690 Major Facilitator Superfamily AWJ11_12970 PF00437 Type II/IV secretion system protein AWJ11_13015 PF00330 Aconitase family (aconitate hydratase) AWJ11_13015 PF00694 Aconitase C-terminal domain AWJ11_13035 PF00665 Integrase core domain AWJ11_13035 PF13936 Helix-turn-helix domain AWJ11_13045 PF01609 Transposase DDE domain AWJ11_13055 PF00011 Hsp20/alpha crystallin family AWJ11_13060 PF00206 Lyase AWJ11_13060 PF08328 Adenylosuccinate lyase C-terminal AWJ11_13090 PF00005 ABC transporter AWJ11_13100 PF07715 TonB-dependent Receptor Plug Domain AWJ11_13100 PF00593 TonB dependent receptor AWJ11_13120 PF01810 LysE type translocator AWJ11_13125 PF00171 Aldehyde dehydrogenase family AWJ11_13130 PF01472 PUA domain AWJ11_13130 PF00696 Amino acid kinase family AWJ11_13135 PF01609 Transposase DDE domain AWJ11_13155 PF01609 Transposase DDE domain AWJ11_13165 PF02810 SEC-C motif AWJ11_13175 PF01427 D-ala-D-ala dipeptidase AWJ11_13180 PF01636 Phosphotransferase enzyme family AWJ11_13185 PF03079 ARD/ARD' family AWJ11_13200 PF01008 Initiation factor 2 subunit family AWJ11_13205 PF00303 Thymidylate synthase AWJ11_13210 PF01790 Prolipoprotein diacylglyceryl transferase AWJ11_13220 PF01384 Phosphate transporter family AWJ11_13225 PF01865 Protein of unknown function DUF47 AWJ11_13240 PF07690 Major Facilitator Superfamily AWJ11_13260 PF01609 Transposase DDE domain AWJ11_13275 PF00324 Amino acid permease AWJ11_13280 PF10415 Fumarase C C-terminus AWJ11_13280 PF00206 Lyase AWJ11_13300 PF01609 Transposase DDE domain AWJ11_13305 PF01609 Transposase DDE domain AWJ11_13320 PF07690 Major Facilitator Superfamily AWJ11_13420 PF00437 Type II/IV secretion system protein AWJ11_13475 PF09335 SNARE associated Golgi protein AWJ11_13480 PF02254 TrkA-N domain AWJ11_13480 PF07885 Ion channel AWJ11_13505 PF00665 Integrase core domain AWJ11_13505 PF13936 Helix-turn-helix domain AWJ11_13510 PF08240 Alcohol dehydrogenase GroES-like domain AWJ11_13510 PF00107 Zinc-binding dehydrogenase AWJ11_13515 PF00155 Aminotransferase class I and II AWJ11_13555 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AWJ11_13555 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AWJ11_13565 PF08241 Methyltransferase domain AWJ11_13570 PF12697 Alpha/beta hydrolase family AWJ11_13575 PF00155 Aminotransferase class I and II AWJ11_13585 PF00156 Phosphoribosyl transferase domain AWJ11_13610 PF01467 Cytidylyltransferase-like AWJ11_13610 PF00294 pfkB family carbohydrate kinase AWJ11_13615 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AWJ11_13615 PF01565 FAD binding domain AWJ11_13640 PF00311 Phosphoenolpyruvate carboxylase AWJ11_13650 PF14319 Transposase zinc-binding domain AWJ11_13650 PF04986 Putative transposase AWJ11_13655 PF05116 Sucrose-6F-phosphate phosphohydrolase AWJ11_13660 PF13610 DDE domain AWJ11_13665 PF01609 Transposase DDE domain AWJ11_13690 PF00202 Aminotransferase class-III AWJ11_13695 PF03477 ATP cone domain AWJ11_13695 PF00317 Ribonucleotide reductase, all-alpha domain AWJ11_13695 PF02867 Ribonucleotide reductase, barrel domain AWJ11_13700 PF00268 Ribonucleotide reductase, small chain AWJ11_13710 PF01329 Pterin 4 alpha carbinolamine dehydratase AWJ11_13715 PF00216 Bacterial DNA-binding protein AWJ11_13720 PF00072 Response regulator receiver domain AWJ11_13735 PF01494 FAD binding domain AWJ11_13740 PF01494 FAD binding domain AWJ11_13745 PF03695 Uncharacterised protein family (UPF0149) AWJ11_13755 PF05164 Cell division protein ZapA AWJ11_13765 PF01812 5-formyltetrahydrofolate cyclo-ligase family AWJ11_13775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AWJ11_13775 PF00672 HAMP domain AWJ11_13780 PF00459 Inositol monophosphatase family AWJ11_13785 PF00293 NUDIX domain AWJ11_13790 PF01479 S4 domain AWJ11_13810 PF13936 Helix-turn-helix domain AWJ11_13810 PF00665 Integrase core domain AWJ11_13840 PF01609 Transposase DDE domain AWJ11_13850 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AWJ11_13850 PF04055 Radical SAM superfamily AWJ11_13855 PF03099 Biotin/lipoate A/B protein ligase family AWJ11_13860 PF01063 Amino-transferase class IV AWJ11_13865 PF00768 D-alanyl-D-alanine carboxypeptidase AWJ11_13865 PF07943 Penicillin-binding protein 5, C-terminal domain AWJ11_13875 PF13406 Transglycosylase SLT domain AWJ11_13880 PF01098 Cell cycle protein AWJ11_13885 PF00905 Penicillin binding protein transpeptidase domain AWJ11_13885 PF03717 Penicillin-binding Protein dimerisation domain AWJ11_13890 PF02590 Predicted SPOUT methyltransferase AWJ11_13900 PF01467 Cytidylyltransferase-like AWJ11_13905 PF06144 DNA polymerase III, delta subunit AWJ11_13905 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AWJ11_13915 PF00133 tRNA synthetases class I (I, L, M and V) AWJ11_13915 PF08264 Anticodon-binding domain of tRNA AWJ11_13915 PF13603 Leucyl-tRNA synthetase, Domain 2 AWJ11_13915 PF09334 tRNA synthetases class I (M) AWJ11_13930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AWJ11_13930 PF02743 Cache domain AWJ11_13930 PF00672 HAMP domain AWJ11_13940 PF03109 ABC1 family AWJ11_13950 PF01209 ubiE/COQ5 methyltransferase family AWJ11_13960 PF00004 ATPase family associated with various cellular activities (AAA) AWJ11_13960 PF10431 C-terminal, D2-small domain, of ClpB protein AWJ11_13960 PF07724 AAA domain (Cdc48 subfamily) AWJ11_13965 PF00227 Proteasome subunit AWJ11_13975 PF00750 tRNA synthetases class I (R) AWJ11_13975 PF03485 Arginyl tRNA synthetase N terminal domain AWJ11_13975 PF05746 DALR anticodon binding domain AWJ11_13980 PF01926 50S ribosome-binding GTPase AWJ11_13985 PF01258 Prokaryotic dksA/traR C4-type zinc finger AWJ11_14005 PF00579 tRNA synthetases class I (W and Y) AWJ11_14010 PF02600 Disulfide bond formation protein DsbB AWJ11_14015 PF00588 SpoU rRNA Methylase family AWJ11_14020 PF00571 CBS domain AWJ11_14020 PF01595 Cyclin M transmembrane N-terminal domain AWJ11_14040 PF01609 Transposase DDE domain AWJ11_14060 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AWJ11_14065 PF07690 Major Facilitator Superfamily AWJ11_14070 PF01196 Ribosomal protein L17 AWJ11_14075 PF01000 RNA polymerase Rpb3/RpoA insert domain AWJ11_14075 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AWJ11_14075 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AWJ11_14080 PF01479 S4 domain AWJ11_14080 PF00163 Ribosomal protein S4/S9 N-terminal domain AWJ11_14085 PF00411 Ribosomal protein S11 AWJ11_14090 PF00416 Ribosomal protein S13/S18 AWJ11_14095 PF00344 SecY translocase AWJ11_14100 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AWJ11_14105 PF00327 Ribosomal protein L30p/L7e AWJ11_14110 PF00333 Ribosomal protein S5, N-terminal domain AWJ11_14110 PF03719 Ribosomal protein S5, C-terminal domain AWJ11_14115 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AWJ11_14120 PF00347 Ribosomal protein L6 AWJ11_14125 PF00410 Ribosomal protein S8 AWJ11_14130 PF00253 Ribosomal protein S14p/S29e AWJ11_14135 PF00281 Ribosomal protein L5 AWJ11_14135 PF00673 ribosomal L5P family C-terminus AWJ11_14140 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AWJ11_14140 PF00467 KOW motif AWJ11_14145 PF00238 Ribosomal protein L14p/L23e AWJ11_14150 PF00366 Ribosomal protein S17 AWJ11_14155 PF00831 Ribosomal L29 protein AWJ11_14160 PF00252 Ribosomal protein L16p/L10e AWJ11_14165 PF00189 Ribosomal protein S3, C-terminal domain AWJ11_14165 PF07650 KH domain AWJ11_14170 PF00237 Ribosomal protein L22p/L17e AWJ11_14175 PF00203 Ribosomal protein S19 AWJ11_14180 PF00181 Ribosomal Proteins L2, RNA binding domain AWJ11_14180 PF03947 Ribosomal Proteins L2, C-terminal domain AWJ11_14185 PF00276 Ribosomal protein L23 AWJ11_14195 PF00297 Ribosomal protein L3 AWJ11_14200 PF00338 Ribosomal protein S10p/S20e AWJ11_14205 PF03143 Elongation factor Tu C-terminal domain AWJ11_14205 PF00009 Elongation factor Tu GTP binding domain AWJ11_14205 PF03144 Elongation factor Tu domain 2 AWJ11_14210 PF03144 Elongation factor Tu domain 2 AWJ11_14210 PF03764 Elongation factor G, domain IV AWJ11_14210 PF00679 Elongation factor G C-terminus AWJ11_14210 PF00009 Elongation factor Tu GTP binding domain AWJ11_14210 PF14492 Elongation Factor G, domain II AWJ11_14215 PF00177 Ribosomal protein S7p/S5e AWJ11_14220 PF00164 Ribosomal protein S12/S23 AWJ11_14225 PF00623 RNA polymerase Rpb1, domain 2 AWJ11_14225 PF05000 RNA polymerase Rpb1, domain 4 AWJ11_14225 PF04998 RNA polymerase Rpb1, domain 5 AWJ11_14225 PF04997 RNA polymerase Rpb1, domain 1 AWJ11_14225 PF04983 RNA polymerase Rpb1, domain 3 AWJ11_14230 PF04561 RNA polymerase Rpb2, domain 2 AWJ11_14230 PF04565 RNA polymerase Rpb2, domain 3 AWJ11_14230 PF10385 RNA polymerase beta subunit external 1 domain AWJ11_14230 PF00562 RNA polymerase Rpb2, domain 6 AWJ11_14230 PF04560 RNA polymerase Rpb2, domain 7 AWJ11_14230 PF04563 RNA polymerase beta subunit AWJ11_14235 PF00542 Ribosomal protein L7/L12 C-terminal domain AWJ11_14235 PF16320 Ribosomal protein L7/L12 dimerisation domain AWJ11_14240 PF00466 Ribosomal protein L10 AWJ11_14245 PF00687 Ribosomal protein L1p/L10e family AWJ11_14250 PF03946 Ribosomal protein L11, N-terminal domain AWJ11_14250 PF00298 Ribosomal protein L11, RNA binding domain AWJ11_14255 PF00467 KOW motif AWJ11_14255 PF02357 Transcription termination factor nusG AWJ11_14260 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AWJ11_14285 PF07963 Prokaryotic N-terminal methylation motif AWJ11_14285 PF00114 Pilin (bacterial filament) AWJ11_14290 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AWJ11_14290 PF00437 Type II/IV secretion system protein AWJ11_14295 PF00482 Type II secretion system (T2SS), protein F AWJ11_14305 PF00482 Type II secretion system (T2SS), protein F AWJ11_14310 PF01478 Type IV leader peptidase family AWJ11_14310 PF06750 Bacterial Peptidase A24 N-terminal domain AWJ11_14315 PF01121 Dephospho-CoA kinase AWJ11_14320 PF07072 Cell division protein AWJ11_14325 PF03884 DNA gyrase inhibitor YacG AWJ11_14335 PF04957 Ribosome modulation factor AWJ11_14340 PF00083 Sugar (and other) transporter AWJ11_14345 PF03449 Transcription elongation factor, N-terminal AWJ11_14345 PF01272 Transcription elongation factor, GreA/GreB, C-term AWJ11_14350 PF01113 Dihydrodipicolinate reductase, N-terminus AWJ11_14350 PF05173 Dihydrodipicolinate reductase, C-terminus AWJ11_14355 PF00226 DnaJ domain AWJ11_14355 PF00684 DnaJ central domain AWJ11_14355 PF01556 DnaJ C terminal domain AWJ11_14360 PF00012 Hsp70 protein AWJ11_14365 PF01025 GrpE AWJ11_14370 PF01513 ATP-NAD kinase AWJ11_14375 PF02463 RecF/RecN/SMC N terminal domain AWJ11_14385 PF01475 Ferric uptake regulator family AWJ11_14405 PF03364 Polyketide cyclase / dehydrase and lipid transport AWJ11_14410 PF01668 SmpB protein AWJ11_14415 PF00809 Pterin binding enzyme AWJ11_14425 PF04960 Glutaminase AWJ11_14430 PF00561 alpha/beta hydrolase fold AWJ11_14435 PF02580 D-Tyr-tRNA(Tyr) deacylase AWJ11_14445 PF04333 MlaA lipoprotein AWJ11_14455 PF00665 Integrase core domain AWJ11_14455 PF13936 Helix-turn-helix domain AWJ11_14480 PF13936 Helix-turn-helix domain AWJ11_14480 PF00665 Integrase core domain AWJ11_14485 PF02152 Dihydroneopterin aldolase AWJ11_14515 PF14814 Bifunctional transglycosylase second domain AWJ11_14515 PF00905 Penicillin binding protein transpeptidase domain AWJ11_14515 PF00912 Transglycosylase AWJ11_14520 PF01743 Poly A polymerase head domain AWJ11_14520 PF12627 Probable RNA and SrmB- binding site of polymerase A AWJ11_14520 PF12626 Polymerase A arginine-rich C-terminus AWJ11_14525 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AWJ11_14530 PF00108 Thiolase, N-terminal domain AWJ11_14530 PF02803 Thiolase, C-terminal domain AWJ11_14535 PF00106 short chain dehydrogenase AWJ11_14540 PF05233 PHB accumulation regulatory domain AWJ11_14540 PF07879 PHB/PHA accumulation regulator DNA-binding domain AWJ11_14555 PF00561 alpha/beta hydrolase fold AWJ11_14565 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AWJ11_14565 PF01138 3' exoribonuclease family, domain 1 AWJ11_14565 PF03725 3' exoribonuclease family, domain 2 AWJ11_14565 PF00575 S1 RNA binding domain AWJ11_14565 PF00013 KH domain AWJ11_14570 PF00312 Ribosomal protein S15 AWJ11_14575 PF01509 TruB family pseudouridylate synthase (N terminal domain) AWJ11_14575 PF16198 tRNA pseudouridylate synthase B C-terminal domain AWJ11_14575 PF09157 Pseudouridine synthase II TruB, C-terminal AWJ11_14580 PF02033 Ribosome-binding factor A AWJ11_14585 PF00009 Elongation factor Tu GTP binding domain AWJ11_14585 PF11987 Translation-initiation factor 2 AWJ11_14585 PF08364 Bacterial translation initiation factor IF-2 associated region AWJ11_14585 PF04760 Translation initiation factor IF-2, N-terminal region AWJ11_14590 PF08529 NusA N-terminal domain AWJ11_14590 PF13184 NusA-like KH domain AWJ11_14595 PF02576 RimP N-terminal domain AWJ11_14595 PF17384 RimP C-terminal SH3 domain AWJ11_14605 PF00361 Proton-conducting membrane transporter AWJ11_14610 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AWJ11_14610 PF00361 Proton-conducting membrane transporter AWJ11_14615 PF00361 Proton-conducting membrane transporter AWJ11_14615 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AWJ11_14620 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AWJ11_14625 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AWJ11_14630 PF12838 4Fe-4S dicluster domain AWJ11_14635 PF00146 NADH dehydrogenase AWJ11_14640 PF00384 Molybdopterin oxidoreductase AWJ11_14640 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AWJ11_14640 PF00384 Molybdopterin oxidoreductase AWJ11_14640 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AWJ11_14640 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AWJ11_14640 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AWJ11_14645 PF10531 SLBB domain AWJ11_14645 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AWJ11_14645 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AWJ11_14655 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AWJ11_14660 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AWJ11_14665 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AWJ11_14670 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AWJ11_14680 PF03840 Preprotein translocase SecG subunit AWJ11_14685 PF00121 Triosephosphate isomerase AWJ11_14695 PF01510 N-acetylmuramoyl-L-alanine amidase AWJ11_14700 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AWJ11_14700 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AWJ11_14705 PF00265 Thymidine kinase AWJ11_14720 PF04241 Protein of unknown function (DUF423) AWJ11_14730 PF01435 Peptidase family M48 AWJ11_14735 PF00293 NUDIX domain AWJ11_14755 PF01625 Peptide methionine sulfoxide reductase AWJ11_14760 PF01418 Helix-turn-helix domain, rpiR family AWJ11_14760 PF01380 SIS domain AWJ11_14765 PF01197 Ribosomal protein L31 AWJ11_14770 PF03949 Malic enzyme, NAD binding domain AWJ11_14770 PF00390 Malic enzyme, N-terminal domain AWJ11_14785 PF13936 Helix-turn-helix domain AWJ11_14785 PF00665 Integrase core domain AWJ11_14800 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AWJ11_14805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AWJ11_14815 PF02798 Glutathione S-transferase, N-terminal domain AWJ11_14815 PF14497 Glutathione S-transferase, C-terminal domain AWJ11_14820 PF00155 Aminotransferase class I and II AWJ11_14830 PF13667 ThiC-associated domain AWJ11_14830 PF01964 Radical SAM ThiC family AWJ11_14835 PF03853 YjeF-related protein N-terminus AWJ11_14835 PF01256 Carbohydrate kinase AWJ11_14840 PF03372 Endonuclease/Exonuclease/phosphatase family AWJ11_14845 PF01145 SPFH domain / Band 7 family AWJ11_14845 PF16200 C-terminal region of band_7 AWJ11_14850 PF01957 NfeD-like C-terminal, partner-binding AWJ11_14875 PF01609 Transposase DDE domain AWJ11_14885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AWJ11_14885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AWJ11_14885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AWJ11_14885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AWJ11_14890 PF00692 dUTPase AWJ11_14895 PF02441 Flavoprotein AWJ11_14895 PF04127 DNA / pantothenate metabolism flavoprotein AWJ11_14900 PF00830 Ribosomal L28 family AWJ11_14905 PF00471 Ribosomal protein L33 AWJ11_14915 PF01554 MatE AWJ11_14945 PF13276 HTH-like domain AWJ11_14945 PF00665 Integrase core domain AWJ11_14945 PF13333 Integrase core domain AWJ11_14950 PF01527 Transposase AWJ11_14970 PF00005 ABC transporter AWJ11_14975 PF00186 Dihydrofolate reductase AWJ11_14985 PF03466 LysR substrate binding domain AWJ11_14985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AWJ11_15025 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AWJ11_15025 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AWJ11_15035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AWJ11_15035 PF07498 Rho termination factor, N-terminal domain AWJ11_15035 PF07497 Rho termination factor, RNA-binding domain AWJ11_15040 PF00085 Thioredoxin AWJ11_15045 PF02541 Ppx/GppA phosphatase family AWJ11_15050 PF13090 Polyphosphate kinase C-terminal domain 2 AWJ11_15050 PF17941 Polyphosphate kinase C-terminal domain 1 AWJ11_15050 PF13089 Polyphosphate kinase N-terminal domain AWJ11_15050 PF02503 Polyphosphate kinase middle domain AWJ11_15055 PF00490 Delta-aminolevulinic acid dehydratase AWJ11_15060 PF13520 Amino acid permease AWJ11_15065 PF03951 Glutamine synthetase, beta-Grasp domain AWJ11_15065 PF00120 Glutamine synthetase, catalytic domain AWJ11_15070 PF01545 Cation efflux family AWJ11_15070 PF16916 Dimerisation domain of Zinc Transporter AWJ11_15075 PF00924 Mechanosensitive ion channel AWJ11_15075 PF05552 Conserved TM helix AWJ11_15105 PF02569 Pantoate-beta-alanine ligase AWJ11_15115 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AWJ11_15140 PF13936 Helix-turn-helix domain AWJ11_15140 PF00665 Integrase core domain AWJ11_15145 PF07690 Major Facilitator Superfamily AWJ11_15150 PF07690 Major Facilitator Superfamily AWJ11_15155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AWJ11_15155 PF03466 LysR substrate binding domain AWJ11_15165 PF01202 Shikimate kinase AWJ11_15170 PF03958 Bacterial type II/III secretion system short domain AWJ11_15170 PF00263 Bacterial type II and III secretion system protein AWJ11_15175 PF07660 Secretin and TonB N terminus short domain AWJ11_15175 PF03958 Bacterial type II/III secretion system short domain AWJ11_15175 PF11741 AMIN domain AWJ11_15175 PF00263 Bacterial type II and III secretion system protein AWJ11_15200 PF17092 Penicillin-binding protein OB-like domain AWJ11_15200 PF00912 Transglycosylase AWJ11_15200 PF00905 Penicillin binding protein transpeptidase domain AWJ11_15220 PF13091 PLD-like domain AWJ11_15225 PF00152 tRNA synthetases class II (D, K and N) AWJ11_15225 PF01336 OB-fold nucleic acid binding domain AWJ11_15230 PF00437 Type II/IV secretion system protein AWJ11_15250 PF03743 Bacterial conjugation TrbI-like protein AWJ11_15255 PF03524 Conjugal transfer protein AWJ11_15265 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AWJ11_15290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AWJ11_15300 PF00873 AcrB/AcrD/AcrF family AWJ11_15320 PF00873 AcrB/AcrD/AcrF family AWJ11_15325 PF13335 Magnesium chelatase, subunit ChlI C-terminal AWJ11_15325 PF01078 Magnesium chelatase, subunit ChlI AWJ11_15330 PF04380 Membrane fusogenic activity AWJ11_15335 PF00543 Nitrogen regulatory protein P-II AWJ11_15340 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AWJ11_15340 PF17944 Arginine decarboxylase C-terminal helical extension AWJ11_15340 PF17810 Arginine decarboxylase helical bundle domain AWJ11_15350 PF00535 Glycosyl transferase family 2 AWJ11_15355 PF18152 DAHP synthase ferredoxin-like domain AWJ11_15355 PF00793 DAHP synthetase I family AWJ11_15360 PF00290 Tryptophan synthase alpha chain AWJ11_15365 PF00291 Pyridoxal-phosphate dependent enzyme AWJ11_15370 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AWJ11_15375 PF00218 Indole-3-glycerol phosphate synthase AWJ11_15380 PF00591 Glycosyl transferase family, a/b domain AWJ11_15380 PF02885 Glycosyl transferase family, helical bundle domain AWJ11_15385 PF00591 Glycosyl transferase family, a/b domain AWJ11_15385 PF00117 Glutamine amidotransferase class-I AWJ11_15385 PF02885 Glycosyl transferase family, helical bundle domain AWJ11_15420 PF00578 AhpC/TSA family AWJ11_15425 PF02627 Carboxymuconolactone decarboxylase family AWJ11_15445 PF00665 Integrase core domain AWJ11_15445 PF13936 Helix-turn-helix domain AWJ11_15450 PF01609 Transposase DDE domain AWJ11_15455 PF01609 Transposase DDE domain AWJ11_15490 PF02091 Glycyl-tRNA synthetase alpha subunit AWJ11_15495 PF05746 DALR anticodon binding domain AWJ11_15495 PF02092 Glycyl-tRNA synthetase beta subunit AWJ11_15500 PF03061 Thioesterase superfamily AWJ11_15530 PF04303 PrpF protein AWJ11_15535 PF01219 Prokaryotic diacylglycerol kinase AWJ11_15540 PF02386 Cation transport protein AWJ11_15545 PF02254 TrkA-N domain AWJ11_15545 PF02080 TrkA-C domain AWJ11_15550 PF01029 NusB family AWJ11_15550 PF01189 16S rRNA methyltransferase RsmB/F AWJ11_15555 PF00551 Formyl transferase AWJ11_15555 PF02911 Formyl transferase, C-terminal domain AWJ11_15560 PF01327 Polypeptide deformylase AWJ11_15565 PF17782 DprA winged helix domain AWJ11_15565 PF02481 DNA recombination-mediator protein A AWJ11_15570 PF04361 Protein of unknown function (DUF494) AWJ11_15575 PF13368 Topoisomerase C-terminal repeat AWJ11_15575 PF01751 Toprim domain AWJ11_15575 PF01131 DNA topoisomerase AWJ11_15580 PF01300 Telomere recombination AWJ11_15585 PF01218 Coproporphyrinogen III oxidase AWJ11_15595 PF00665 Integrase core domain AWJ11_15595 PF13936 Helix-turn-helix domain AWJ11_15610 PF00665 Integrase core domain AWJ11_15610 PF13276 HTH-like domain AWJ11_15615 PF13936 Helix-turn-helix domain AWJ11_15615 PF00665 Integrase core domain AWJ11_15630 PF01609 Transposase DDE domain AWJ11_15655 PF04452 RNA methyltransferase AWJ11_15665 PF03572 Peptidase family S41 AWJ11_15665 PF13180 PDZ domain AWJ11_15675 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AWJ11_15675 PF01676 Metalloenzyme superfamily AWJ11_15685 PF01609 Transposase DDE domain AWJ11_15700 PF01212 Beta-eliminating lyase AWJ11_15710 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AWJ11_15710 PF00476 DNA polymerase family A AWJ11_15710 PF01367 5'-3' exonuclease, C-terminal SAM fold AWJ11_15710 PF01612 3'-5' exonuclease AWJ11_15725 PF07504 Fungalysin/Thermolysin Propeptide Motif AWJ11_15725 PF01447 Thermolysin metallopeptidase, catalytic domain AWJ11_15725 PF02868 Thermolysin metallopeptidase, alpha-helical domain AWJ11_15725 PF03413 Peptidase propeptide and YPEB domain AWJ11_15725 PF04151 Bacterial pre-peptidase C-terminal domain AWJ11_15740 PF04229 GrpB protein AWJ11_15740 PF13673 Acetyltransferase (GNAT) domain AWJ11_15745 PF00654 Voltage gated chloride channel AWJ11_15765 PF00708 Acylphosphatase AWJ11_15775 PF02810 SEC-C motif AWJ11_15775 PF07517 SecA DEAD-like domain AWJ11_15775 PF01043 SecA preprotein cross-linking domain AWJ11_15775 PF07516 SecA Wing and Scaffold domain AWJ11_15780 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AWJ11_15785 PF00091 Tubulin/FtsZ family, GTPase domain AWJ11_15785 PF12327 FtsZ family, C-terminal domain AWJ11_15790 PF02491 SHS2 domain inserted in FTSA AWJ11_15795 PF08478 POTRA domain, FtsQ-type AWJ11_15795 PF03799 Cell division protein FtsQ AWJ11_15800 PF07478 D-ala D-ala ligase C-terminus AWJ11_15800 PF01820 D-ala D-ala ligase N-terminus AWJ11_15805 PF01225 Mur ligase family, catalytic domain AWJ11_15805 PF02875 Mur ligase family, glutamate ligase domain AWJ11_15805 PF08245 Mur ligase middle domain AWJ11_15810 PF03033 Glycosyltransferase family 28 N-terminal domain AWJ11_15810 PF04101 Glycosyltransferase family 28 C-terminal domain AWJ11_15815 PF01098 Cell cycle protein AWJ11_15820 PF02875 Mur ligase family, glutamate ligase domain AWJ11_15820 PF08245 Mur ligase middle domain AWJ11_15825 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AWJ11_15825 PF00953 Glycosyl transferase family 4 AWJ11_15830 PF08245 Mur ligase middle domain AWJ11_15830 PF02875 Mur ligase family, glutamate ligase domain AWJ11_15830 PF01225 Mur ligase family, catalytic domain AWJ11_15835 PF08245 Mur ligase middle domain AWJ11_15835 PF02875 Mur ligase family, glutamate ligase domain AWJ11_15835 PF01225 Mur ligase family, catalytic domain AWJ11_15840 PF00905 Penicillin binding protein transpeptidase domain AWJ11_15840 PF03717 Penicillin-binding Protein dimerisation domain AWJ11_15850 PF01795 MraW methylase family AWJ11_15855 PF03692 Putative zinc- or iron-chelating domain AWJ11_15860 PF05166 YcgL domain AWJ11_15870 PF00202 Aminotransferase class-III AWJ11_15875 PF00204 DNA gyrase B AWJ11_15875 PF00986 DNA gyrase B subunit, carboxyl terminus AWJ11_15875 PF18053 DNA gyrase B subunit insert domain AWJ11_15875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AWJ11_15875 PF01751 Toprim domain AWJ11_15880 PF02463 RecF/RecN/SMC N terminal domain AWJ11_15885 PF00712 DNA polymerase III beta subunit, N-terminal domain AWJ11_15885 PF02767 DNA polymerase III beta subunit, central domain AWJ11_15885 PF02768 DNA polymerase III beta subunit, C-terminal domain AWJ11_15905 PF00665 Integrase core domain AWJ11_15905 PF13936 Helix-turn-helix domain AWJ11_15920 PF13610 DDE domain AWJ11_15935 PF13610 DDE domain AWJ11_15950 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AWJ11_15955 PF13610 DDE domain AWJ11_15960 PF04986 Putative transposase AWJ11_15960 PF14319 Transposase zinc-binding domain AWJ11_15995 PF01510 N-acetylmuramoyl-L-alanine amidase AWJ11_16000 PF13610 DDE domain AWJ11_16005 PF04986 Putative transposase AWJ11_16005 PF14319 Transposase zinc-binding domain AWJ11_16055 PF00512 His Kinase A (phospho-acceptor) domain AWJ11_16055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AWJ11_16055 PF00672 HAMP domain AWJ11_16075 PF02463 RecF/RecN/SMC N terminal domain AWJ11_16080 PF00107 Zinc-binding dehydrogenase AWJ11_16080 PF08240 Alcohol dehydrogenase GroES-like domain AWJ11_16100 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AWJ11_16105 PF01850 PIN domain AWJ11_16130 PF03354 Phage Terminase AWJ11_16135 PF03354 Phage Terminase AWJ11_16145 PF13610 DDE domain AWJ11_16150 PF13936 Helix-turn-helix domain AWJ11_16160 PF13610 DDE domain AWJ11_16170 PF13610 DDE domain AWJ11_16175 PF13936 Helix-turn-helix domain AWJ11_16175 PF00665 Integrase core domain AWJ11_16200 PF13737 Transposase DDE domain AWJ11_16210 PF13737 Transposase DDE domain AWJ11_16220 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AWJ11_16230 PF13737 Transposase DDE domain AWJ11_16240 PF13091 PLD-like domain AWJ11_16260 PF02661 Fic/DOC family AWJ11_16260 PF12728 Helix-turn-helix domain AWJ11_16265 PF01061 ABC-2 type transporter AWJ11_16270 PF13610 DDE domain AWJ11_16285 PF01051 Initiator Replication protein AWJ11_16315 PF13610 DDE domain AWJ11_16320 PF00239 Resolvase, N terminal domain AWJ11_16320 PF02796 Helix-turn-helix domain of resolvase AWJ11_16325 PF13610 DDE domain AWJ11_16340 PF13737 Transposase DDE domain AWJ11_16355 PF07690 Major Facilitator Superfamily AWJ11_16360 PF13936 Helix-turn-helix domain AWJ11_16365 PF13936 Helix-turn-helix domain AWJ11_16365 PF00665 Integrase core domain AWJ11_16370 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AWJ11_16375 PF13936 Helix-turn-helix domain AWJ11_16375 PF00665 Integrase core domain AWJ11_16390 PF00665 Integrase core domain AWJ11_16390 PF13936 Helix-turn-helix domain AWJ11_16395 PF13936 Helix-turn-helix domain AWJ11_16395 PF00665 Integrase core domain AWJ11_16415 PF00665 Integrase core domain AWJ11_16415 PF13936 Helix-turn-helix domain AWJ11_16425 PF14319 Transposase zinc-binding domain AWJ11_16425 PF04986 Putative transposase AWJ11_16450 PF13610 DDE domain AWJ11_16475 PF13610 DDE domain AWJ11_16480 PF00665 Integrase core domain AWJ11_16480 PF13936 Helix-turn-helix domain AWJ11_16485 PF13610 DDE domain AWJ11_16495 PF13610 DDE domain AWJ11_16510 PF13610 DDE domain AWJ11_16520 PF13610 DDE domain AWJ11_16525 PF00326 Prolyl oligopeptidase family AWJ11_16525 PF07676 WD40-like Beta Propeller Repeat AWJ11_16530 PF13936 Helix-turn-helix domain AWJ11_16535 PF13610 DDE domain AWJ11_16555 PF13936 Helix-turn-helix domain AWJ11_16555 PF00665 Integrase core domain AWJ11_16565 PF13610 DDE domain AWJ11_16625 PF00665 Integrase core domain AWJ11_16625 PF13936 Helix-turn-helix domain AWJ11_16640 PF00665 Integrase core domain AWJ11_16640 PF13936 Helix-turn-helix domain AWJ11_16685 PF13936 Helix-turn-helix domain AWJ11_16685 PF00665 Integrase core domain AWJ11_16700 PF13936 Helix-turn-helix domain AWJ11_16700 PF00665 Integrase core domain AWJ11_16725 PF00665 Integrase core domain AWJ11_16725 PF13936 Helix-turn-helix domain AWJ11_16750 PF00665 Integrase core domain AWJ11_16750 PF13936 Helix-turn-helix domain AWJ11_16765 PF00589 Phage integrase family AWJ11_16765 PF02899 Phage integrase, N-terminal SAM-like domain AWJ11_16775 PF00665 Integrase core domain AWJ11_16775 PF13936 Helix-turn-helix domain AWJ11_16790 PF17762 HTH domain found in ParB protein AWJ11_16790 PF02195 ParB-like nuclease domain AWJ11_16795 PF13614 AAA domain AWJ11_16825 PF08751 TrwC relaxase AWJ11_16825 PF18340 DNA relaxase TraI 2B/2B-like domain AWJ11_16825 PF07057 DNA helicase TraI AWJ11_16825 PF18272 single-stranded DNA binding TraI N-terminal subdomain AWJ11_16835 PF05818 Enterobacterial TraT complement resistance protein AWJ11_16845 PF10412 Type IV secretion-system coupling protein DNA-binding domain AWJ11_16845 PF12615 F sex factor protein N terminal AWJ11_16860 PF18272 single-stranded DNA binding TraI N-terminal subdomain AWJ11_16860 PF08751 TrwC relaxase AWJ11_16860 PF18340 DNA relaxase TraI 2B/2B-like domain AWJ11_16860 PF07057 DNA helicase TraI AWJ11_16885 PF01556 DnaJ C terminal domain AWJ11_16885 PF00226 DnaJ domain AWJ11_16885 PF00684 DnaJ central domain AWJ11_16900 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AWJ11_16900 PF13538 UvrD-like helicase C-terminal domain AWJ11_16900 PF14490 Helix-hairpin-helix containing domain AWJ11_16970 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AWJ11_16980 PF02899 Phage integrase, N-terminal SAM-like domain AWJ11_16980 PF00589 Phage integrase family AWJ11_17020 PF13614 AAA domain AWJ11_17025 PF02195 ParB-like nuclease domain AWJ11_17025 PF17762 HTH domain found in ParB protein AWJ11_17030 PF00202 Aminotransferase class-III AWJ11_17035 PF00196 Bacterial regulatory proteins, luxR family AWJ11_17035 PF00072 Response regulator receiver domain AWJ11_17040 PF08645 Polynucleotide kinase 3 phosphatase AWJ11_17045 PF08241 Methyltransferase domain AWJ11_17065 PF05513 TraA AWJ11_17090 PF03743 Bacterial conjugation TrbI-like protein AWJ11_17100 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer AWJ11_17115 PF06834 TraU protein AWJ11_17120 PF09673 Type-F conjugative transfer system pilin assembly protein AWJ11_17125 PF06986 Type-1V conjugative transfer system mating pair stabilisation AWJ11_17140 PF06122 Conjugative relaxosome accessory transposon protein AWJ11_17155 PF05818 Enterobacterial TraT complement resistance protein AWJ11_17165 PF12615 F sex factor protein N terminal AWJ11_17165 PF10412 Type IV secretion-system coupling protein DNA-binding domain