P9301_00001 SM00480 DNA polymerase III beta subunit P9301_00041 SM00434 DNA Topoisomerase IV P9301_00051 SM00028 Tetratricopeptide repeats P9301_00091 SM00382 ATPases associated with a variety of cellular activities P9301_00091 SM00962 SRP54-type protein, GTPase domain P9301_00091 SM00963 SRP54-type protein, helical bundle domain P9301_00101 SM00331 Sigma factor PP2C-like phosphatases P9301_00121 SM00360 RNA recognition motif P9301_00161 SM00271 DnaJ molecular chaperone homology domain P9301_00221 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain P9301_00251 SM00841 Elongation factor P, C-terminal P9301_00251 SM01185 P9301_00251 P9301_00301 SM00507 HNH nucleases P9301_00381 SM00028 Tetratricopeptide repeats P9301_00391 SM00028 Tetratricopeptide repeats P9301_00451 SM00903 Flavin reductase like domain P9301_00461 SM00849 Metallo-beta-lactamase superfamily P9301_00461 SM00903 Flavin reductase like domain P9301_00471 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain P9301_00491 SM00562 P9301_00491 P9301_00511 SM00845 GatB domain P9301_00541 SM00487 DEAD-like helicases superfamily P9301_00541 SM00490 helicase superfamily c-terminal domain P9301_00551 SM00028 Tetratricopeptide repeats P9301_00621 SM00981 P9301_00621 P9301_00681 SM00968 SMC proteins Flexible Hinge Domain P9301_00711 SM00878 Biotin carboxylase C-terminal domain P9301_00761 SM00382 ATPases associated with a variety of cellular activities P9301_00831 SM00382 ATPases associated with a variety of cellular activities P9301_00891 SM00382 ATPases associated with a variety of cellular activities P9301_01021 SM00382 ATPases associated with a variety of cellular activities P9301_01041 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. P9301_01161 SM00756 P9301_01161 P9301_01171 SM00729 Elongator protein 3, MiaB family, Radical SAM P9301_01391 SM00271 DnaJ molecular chaperone homology domain P9301_01421 SM00382 ATPases associated with a variety of cellular activities P9301_01471 SM00448 cheY-homologous receiver domain P9301_01471 SM00862 Transcriptional regulatory protein, C terminal P9301_01511 SM00028 Tetratricopeptide repeats P9301_01521 SM00382 ATPases associated with a variety of cellular activities P9301_01531 SM00448 cheY-homologous receiver domain P9301_01531 SM00862 Transcriptional regulatory protein, C terminal P9301_01561 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. P9301_01571 SM00563 Phosphate acyltransferases P9301_01611 SM00360 RNA recognition motif P9301_01731 SM00421 helix_turn_helix, Lux Regulon P9301_01751 SM01118 P9301_01751 P9301_01831 SM00450 Rhodanese Homology Domain P9301_01871 SM01001 AIR carboxylase P9301_01891 SM00421 helix_turn_helix, Lux Regulon P9301_01891 SM00448 cheY-homologous receiver domain P9301_01951 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain P9301_02001 SM00937 P9301_02001 P9301_02071 SM00836 DALR anticodon binding domain P9301_02071 SM01016 Arginyl tRNA synthetase N terminal dom P9301_02111 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. P9301_02111 SM00954 Region found in RelA / SpoT proteins P9301_02121 SM00382 ATPases associated with a variety of cellular activities P9301_02131 SM00363 S4 RNA-binding domain P9301_02241 SM00649 Ribosomal protein L11/L12 P9301_02251 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. P9301_02251 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. P9301_02271 SM00382 ATPases associated with a variety of cellular activities P9301_02271 SM01086 C-terminal, D2-small domain, of ClpB protein P9301_02281 SM01192 P9301_02281 P9301_02281 SM01193 P9301_02281 P9301_02361 SM01004 Delta-aminolevulinic acid dehydratase P9301_02381 SM00463 Small MutS-related domain P9301_02381 SM00533 DNA-binding domain of DNA mismatch repair MUTS family P9301_02381 SM00534 ATPase domain of DNA mismatch repair MUTS family P9301_02411 SM01093 P9301_02411 P9301_02481 SM00382 ATPases associated with a variety of cellular activities P9301_02691 SM00100 Cyclic nucleotide-monophosphate binding domain P9301_02691 SM00419 helix_turn_helix, cAMP Regulatory protein P9301_02711 SM00732 Likely ribonuclease with RNase H fold. P9301_02801 SM00852 Probable molybdopterin binding domain P9301_02891 SM00798 AICARFT/IMPCHase bienzyme P9301_02891 SM00851 MGS-like domain P9301_02921 SM00387 Histidine kinase-like ATPases P9301_02921 SM00388 His Kinase A (phosphoacceptor) domain P9301_02981 SM01091 Transporter associated domain P9301_03121 SM00327 von Willebrand factor (vWF) type A domain P9301_03121 SM00382 ATPases associated with a variety of cellular activities P9301_03141 SM00382 ATPases associated with a variety of cellular activities P9301_03371 SM00316 Ribosomal protein S1-like RNA-binding domain P9301_03491 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. P9301_03501 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. P9301_03501 SM00245 tail specific protease P9301_03551 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain P9301_03551 SM01232 P9301_03551 P9301_03571 SM00257 Lysin motif P9301_04191 SM01133 P9301_04191 P9301_04291 SM00363 S4 RNA-binding domain P9301_04291 SM01390 P9301_04291 P9301_04301 SM01234 P9301_04301 P9301_04401 SM00838 Elongation factor G C-terminus P9301_04581 SM00382 ATPases associated with a variety of cellular activities P9301_04601 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain P9301_04601 SM00437 Bacterial DNA topoisomerase I DNA-binding domain P9301_04601 SM00493 P9301_04601 P9301_04731 SM00382 ATPases associated with a variety of cellular activities P9301_04781 SM00822 P9301_04781 P9301_04921 SM00072 Guanylate kinase homologues. P9301_05091 SM00244 prohibitin homologues P9301_05171 SM00833 Cobalamin synthesis protein cobW C-terminal domain P9301_05241 SM00487 DEAD-like helicases superfamily P9301_05241 SM00490 helicase superfamily c-terminal domain P9301_05331 SM00788 Adenylosuccinate synthetase P9301_05411 SM00855 Phosphoglycerate mutase family P9301_05561 SM00316 Ribosomal protein S1-like RNA-binding domain P9301_05731 SM00877 P9301_05731 P9301_05751 SM00877 P9301_05751 P9301_05771 SM00961 Ribulose bisphosphate carboxylase, small chain P9301_05851 SM00849 Metallo-beta-lactamase superfamily P9301_05871 SM00382 ATPases associated with a variety of cellular activities P9301_05911 SM00382 ATPases associated with a variety of cellular activities P9301_05911 SM00760 Bacterial dnaA protein helix-turn-helix domain P9301_06061 SM00382 ATPases associated with a variety of cellular activities P9301_06061 SM01086 C-terminal, D2-small domain, of ClpB protein P9301_06101 SM00642 Alpha-amylase domain P9301_06111 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain P9301_06171 SM00905 Dihydroneopterin aldolase P9301_06231 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain P9301_06281 SM00382 ATPases associated with a variety of cellular activities P9301_06421 SM00646 P9301_06421 P9301_06471 SM00479 P9301_06471 P9301_06581 SM00974 P9301_06581 P9301_07191 SM00382 ATPases associated with a variety of cellular activities P9301_07251 SM00382 ATPases associated with a variety of cellular activities P9301_07281 SM00986 Uracil DNA glycosylase superfamily P9301_07281 SM00987 UreE urease accessory protein, C-terminal domain P9301_07301 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. P9301_07301 SM00245 tail specific protease P9301_07411 SM00532 Ligase N family P9301_07771 SM00382 ATPases associated with a variety of cellular activities P9301_07821 SM00487 DEAD-like helicases superfamily P9301_07821 SM00490 helicase superfamily c-terminal domain P9301_08031 SM00382 ATPases associated with a variety of cellular activities P9301_08101 SM00382 ATPases associated with a variety of cellular activities P9301_08161 SM00487 DEAD-like helicases superfamily P9301_08161 SM00490 helicase superfamily c-terminal domain P9301_08241 SM00382 ATPases associated with a variety of cellular activities P9301_08301 SM01350 P9301_08301 P9301_08411 SM01211 P9301_08411 P9301_08471 SM01329 P9301_08471 P9301_08491 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase P9301_08521 SM00732 Likely ribonuclease with RNase H fold. P9301_08631 SM00478 endonuclease III P9301_08641 SM00382 ATPases associated with a variety of cellular activities P9301_08681 SM00382 ATPases associated with a variety of cellular activities P9301_08821 SM00382 ATPases associated with a variety of cellular activities P9301_08831 SM00382 ATPases associated with a variety of cellular activities P9301_08891 SM00988 UreE urease accessory protein, N-terminal domain P9301_08951 SM00642 Alpha-amylase domain P9301_09041 SM00382 ATPases associated with a variety of cellular activities P9301_09071 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain P9301_09101 SM00967 RNA 2'-O ribose methyltransferase substrate binding P9301_09131 SM00481 DNA polymerase alpha chain like domain P9301_09151 SM01387 P9301_09151 P9301_09191 SM00400 zinc finger P9301_09191 SM00493 P9301_09191 P9301_09251 SM00650 Ribosomal RNA adenine dimethylases P9301_09281 SM00861 Transketolase, pyrimidine binding domain P9301_09341 SM00450 Rhodanese Homology Domain P9301_09391 SM01230 P9301_09391 P9301_09521 SM00861 Transketolase, pyrimidine binding domain P9301_09631 SM00271 DnaJ molecular chaperone homology domain P9301_09671 SM00859 Semialdehyde dehydrogenase, NAD binding domain P9301_09761 SM00903 Flavin reductase like domain P9301_09771 SM00278 Helix-hairpin-helix DNA-binding motif class 1 P9301_09771 SM00465 GIY-YIG type nucleases (URI domain) P9301_09791 SM00481 DNA polymerase alpha chain like domain P9301_09821 SM01018 B12 binding domain P9301_09871 SM00271 DnaJ molecular chaperone homology domain P9301_09891 SM00873 B3/4 domain P9301_09891 SM00874 tRNA synthetase B5 domain P9301_09891 SM00896 Ferredoxin-fold anticodon binding domain P9301_09921 SM00955 P9301_09921 P9301_10141 SM00382 ATPases associated with a variety of cellular activities P9301_10211 SM00316 Ribosomal protein S1-like RNA-binding domain P9301_10211 SM00955 P9301_10211 P9301_10301 SM00487 DEAD-like helicases superfamily P9301_10301 SM00490 helicase superfamily c-terminal domain P9301_10301 SM00982 P9301_10301 P9301_10301 SM01058 CarD-like/TRCF domain P9301_10421 SM00363 S4 RNA-binding domain P9301_10431 SM00382 ATPases associated with a variety of cellular activities P9301_10451 SM00851 MGS-like domain P9301_10451 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain P9301_10511 SM00382 ATPases associated with a variety of cellular activities P9301_10581 SM00507 HNH nucleases P9301_10691 SM00278 Helix-hairpin-helix DNA-binding motif class 1 P9301_11331 SM00382 ATPases associated with a variety of cellular activities P9301_11351 SM00833 Cobalamin synthesis protein cobW C-terminal domain P9301_11361 SM00320 WD40 repeats P9301_11451 SM00460 Transglutaminase/protease-like homologues P9301_11611 SM00382 ATPases associated with a variety of cellular activities P9301_11681 SM01240 P9301_11681 P9301_11691 SM00434 DNA Topoisomerase IV P9301_11721 SM00917 LeuA allosteric (dimerisation) domain P9301_11741 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. P9301_11841 SM00387 Histidine kinase-like ATPases P9301_11841 SM00388 His Kinase A (phosphoacceptor) domain P9301_11841 SM01248 P9301_11841 P9301_11871 SM01400 P9301_11871 P9301_11951 SM00382 ATPases associated with a variety of cellular activities P9301_11951 SM01086 C-terminal, D2-small domain, of ClpB protein P9301_12001 SM00729 Elongator protein 3, MiaB family, Radical SAM P9301_12001 SM00876 Biotin and Thiamin Synthesis associated domain P9301_12011 SM00450 Rhodanese Homology Domain P9301_12031 SM00729 Elongator protein 3, MiaB family, Radical SAM P9301_12041 SM00493 P9301_12041 P9301_12061 SM00382 ATPases associated with a variety of cellular activities P9301_12081 SM00487 DEAD-like helicases superfamily P9301_12081 SM00490 helicase superfamily c-terminal domain P9301_12151 SM00563 Phosphate acyltransferases P9301_12201 SM00448 cheY-homologous receiver domain P9301_12201 SM00862 Transcriptional regulatory protein, C terminal P9301_12301 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. P9301_12351 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor P9301_12361 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain P9301_12411 SM00387 Histidine kinase-like ATPases P9301_12411 SM00388 His Kinase A (phosphoacceptor) domain P9301_12431 SM00448 cheY-homologous receiver domain P9301_12431 SM00862 Transcriptional regulatory protein, C terminal P9301_12501 SM00382 ATPases associated with a variety of cellular activities P9301_12591 SM00869 Autotransporter beta-domain P9301_12681 SM00363 S4 RNA-binding domain P9301_13141 SM00729 Elongator protein 3, MiaB family, Radical SAM P9301_13291 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs P9301_13291 SM00474 3'-5' exonuclease P9301_13291 SM00475 5'-3' exonuclease P9301_13291 SM00482 DNA polymerase A domain P9301_13301 SM00840 P9301_13301 P9301_13371 SM01002 Alanine dehydrogenase/PNT, C-terminal domain P9301_13371 SM01003 Alanine dehydrogenase/PNT, N-terminal domain P9301_13621 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. P9301_13881 SM00382 ATPases associated with a variety of cellular activities P9301_13901 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. P9301_13921 SM00316 Ribosomal protein S1-like RNA-binding domain P9301_13921 SM00322 K homology RNA-binding domain P9301_13981 SM00984 UDP binding domain P9301_14081 SM00858 P9301_14081 P9301_14231 SM00382 ATPases associated with a variety of cellular activities P9301_14491 SM00382 ATPases associated with a variety of cellular activities P9301_14581 SM00904 Riboflavin kinase P9301_14631 SM01001 AIR carboxylase P9301_14711 SM00382 ATPases associated with a variety of cellular activities P9301_14711 SM00962 SRP54-type protein, GTPase domain P9301_14711 SM00963 SRP54-type protein, helical bundle domain P9301_14911 SM00729 Elongator protein 3, MiaB family, Radical SAM P9301_14951 SM00864 Tubulin/FtsZ family, GTPase domain P9301_14951 SM00865 Tubulin/FtsZ family, C-terminal domain P9301_14971 SM00729 Elongator protein 3, MiaB family, Radical SAM P9301_14981 SM00670 Large family of predicted nucleotide-binding domains P9301_15071 SM00411 bacterial (prokaryotic) histone like domain P9301_15081 SM00642 Alpha-amylase domain P9301_15131 SM01207 P9301_15131 P9301_15141 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family P9301_15261 SM01209 P9301_15261 P9301_15261 SM01210 P9301_15261 P9301_15271 SM00091 PAS domain P9301_15271 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain P9301_15271 SM00387 Histidine kinase-like ATPases P9301_15271 SM00388 His Kinase A (phosphoacceptor) domain P9301_15291 SM01248 P9301_15291 P9301_15421 SM00363 S4 RNA-binding domain P9301_15481 SM00532 Ligase N family P9301_16271 SM00883 Chaperonin 10 Kd subunit P9301_16281 SM00382 ATPases associated with a variety of cellular activities P9301_16321 SM01011 Aminopeptidase P, N-terminal domain P9301_16531 SM00938 Nitrogen regulatory protein P-II P9301_16541 SM00363 S4 RNA-binding domain P9301_16551 SM00998 Adenylosuccinate lyase C-terminus P9301_16571 SM00487 DEAD-like helicases superfamily P9301_16571 SM00490 helicase superfamily c-terminal domain P9301_16571 SM01142 P9301_16571 P9301_16641 SM00271 DnaJ molecular chaperone homology domain P9301_16701 SM00567 E-Z type HEAT repeats P9301_16751 SM00663 RNA polymerase I subunit A N-terminus P9301_16811 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. P9301_16831 SM00322 K homology RNA-binding domain P9301_16891 SM00729 Elongator protein 3, MiaB family, Radical SAM P9301_16921 SM00316 Ribosomal protein S1-like RNA-binding domain P9301_16971 SM00464 Found in ATP-dependent protease La (LON) P9301_16981 SM01403 P9301_16981 P9301_17001 SM00838 Elongation factor G C-terminus P9301_17001 SM00889 Elongation factor G, domain IV P9301_17061 SM00729 Elongator protein 3, MiaB family, Radical SAM P9301_17071 SM00857 Resolvase, N terminal domain P9301_17191 SM01005 Alanine racemase, C-terminal domain P9301_17201 SM00507 HNH nucleases P9301_17211 SM00937 P9301_17211 P9301_17271 SM00662 RNA polymerases D P9301_17381 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. P9301_17391 SM01374 P9301_17391 P9301_17431 SM00322 K homology RNA-binding domain P9301_17461 SM01382 P9301_17461 P9301_17461 SM01383 P9301_17461 P9301_17531 SM00382 ATPases associated with a variety of cellular activities P9301_17601 SM00450 Rhodanese Homology Domain P9301_17761 SM00474 3'-5' exonuclease P9301_17831 SM00226 Low molecular weight phosphatase family P9301_17881 SM01329 P9301_17881 P9301_17961 SM00358 Double-stranded RNA binding motif P9301_17961 SM00535 Ribonuclease III family P9301_18021 SM00825 Beta-ketoacyl synthase P9301_18031 SM00861 Transketolase, pyrimidine binding domain P9301_18061 SM00028 Tetratricopeptide repeats P9301_18071 SM00382 ATPases associated with a variety of cellular activities P9301_18111 SM00448 cheY-homologous receiver domain P9301_18111 SM00862 Transcriptional regulatory protein, C terminal P9301_18171 SM00996 S-adenosyl-L-homocysteine hydrolase P9301_18171 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain P9301_18221 SM00116 Domain in cystathionine beta-synthase and other proteins. P9301_18221 SM00924 MgtE intracellular N domain P9301_18251 SM00387 Histidine kinase-like ATPases P9301_18251 SM00433 TopoisomeraseII P9301_18281 SM00345 helix_turn_helix gluconate operon transcriptional repressor P9301_18301 SM00957 SecA DEAD-like domain P9301_18301 SM00958 SecA preprotein cross-linking domain P9301_18351 SM00533 DNA-binding domain of DNA mismatch repair MUTS family P9301_18351 SM00534 ATPase domain of DNA mismatch repair MUTS family P9301_18391 SM00487 DEAD-like helicases superfamily P9301_18391 SM00490 helicase superfamily c-terminal domain P9301_18421 SM00849 Metallo-beta-lactamase superfamily P9301_18431 SM01130 P9301_18431 P9301_18441 SM00859 Semialdehyde dehydrogenase, NAD binding domain P9301_18471 SM00382 ATPases associated with a variety of cellular activities P9301_18471 SM00994 ClpX C4-type zinc finger P9301_18471 SM01086 C-terminal, D2-small domain, of ClpB protein P9301_18481 SM00382 ATPases associated with a variety of cellular activities P9301_18531 SM00028 Tetratricopeptide repeats P9301_18641 SM00382 ATPases associated with a variety of cellular activities P9301_18651 SM01228 P9301_18651 P9301_18681 SM00731 SprT homologues.