locus-tag class description GCE56_00005 PF02534 Type IV secretory system Conjugative DNA transfer GCE56_00015 PF01464 Transglycosylase SLT domain GCE56_00020 PF08401 Domain of unknown function (DUF1738) GCE56_00020 PF13362 Toprim domain GCE56_00020 PF18818 Metallopeptidase superfamily domain GCE56_00025 PF01131 DNA topoisomerase GCE56_00025 PF01396 Topoisomerase DNA binding C4 zinc finger GCE56_00025 PF01751 Toprim domain GCE56_00075 PF00239 Resolvase, N terminal domain GCE56_00075 PF02796 Helix-turn-helix domain of resolvase GCE56_00085 PF18790 KfrB protein GCE56_00090 PF03743 Bacterial conjugation TrbI-like protein GCE56_00100 PF03524 Conjugal transfer protein GCE56_00105 PF04335 VirB8 protein GCE56_00130 PF03135 CagE, TrbE, VirB family, component of type IV transporter system GCE56_00135 PF05101 Type IV secretory pathway, VirB3-like protein GCE56_00140 PF04956 TrbC/VIRB2 family GCE56_00145 PF00437 Type II/IV secretion system protein GCE56_00165 PF05973 Phage derived protein Gp49-like (DUF891) GCE56_00205 PF03432 Relaxase/Mobilisation nuclease domain GCE56_00205 PF18821 Large polyvalent protein-associated domain 7 GCE56_00210 PF01051 Initiator Replication protein GCE56_00220 PF00239 Resolvase, N terminal domain GCE56_00220 PF02796 Helix-turn-helix domain of resolvase GCE56_00230 PF13610 DDE domain GCE56_00275 PF02796 Helix-turn-helix domain of resolvase GCE56_00275 PF00239 Resolvase, N terminal domain GCE56_00345 PF00717 Peptidase S24-like GCE56_00360 PF13610 DDE domain GCE56_00380 PF11638 DnaA N-terminal domain GCE56_00380 PF08299 Bacterial dnaA protein helix-turn-helix GCE56_00380 PF00308 Bacterial dnaA protein GCE56_00385 PF02767 DNA polymerase III beta subunit, central domain GCE56_00385 PF02768 DNA polymerase III beta subunit, C-terminal domain GCE56_00385 PF00712 DNA polymerase III beta subunit, N-terminal domain GCE56_00390 PF02463 RecF/RecN/SMC N terminal domain GCE56_00395 PF01751 Toprim domain GCE56_00395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_00395 PF18053 DNA gyrase B subunit insert domain GCE56_00395 PF00986 DNA gyrase B subunit, carboxyl terminus GCE56_00395 PF00204 DNA gyrase B GCE56_00400 PF01118 Semialdehyde dehydrogenase, NAD binding domain GCE56_00400 PF02774 Semialdehyde dehydrogenase, dimerisation domain GCE56_00405 PF13649 Methyltransferase domain GCE56_00410 PF00392 Bacterial regulatory proteins, gntR family GCE56_00410 PF00155 Aminotransferase class I and II GCE56_00425 PF13580 SIS domain GCE56_00445 PF03755 YicC-like family, N-terminal region GCE56_00445 PF08340 Domain of unknown function (DUF1732) GCE56_00450 PF01138 3' exoribonuclease family, domain 1 GCE56_00450 PF03725 3' exoribonuclease family, domain 2 GCE56_00455 PF00156 Phosphoribosyl transferase domain GCE56_00460 PF00440 Bacterial regulatory proteins, tetR family GCE56_00465 PF00692 dUTPase GCE56_00470 PF02441 Flavoprotein GCE56_00470 PF04127 DNA / pantothenate metabolism flavoprotein GCE56_00475 PF04002 RadC-like JAB domain GCE56_00485 PF00830 Ribosomal L28 family GCE56_00490 PF00471 Ribosomal protein L33 GCE56_00495 PF00534 Glycosyl transferases group 1 GCE56_00505 PF13439 Glycosyltransferase Family 4 GCE56_00505 PF00534 Glycosyl transferases group 1 GCE56_00515 PF04932 O-Antigen ligase GCE56_00520 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain GCE56_00520 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain GCE56_00520 PF06827 Zinc finger found in FPG and IleRS GCE56_00525 PF01467 Cytidylyltransferase-like GCE56_00530 PF00535 Glycosyl transferase family 2 GCE56_00535 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) GCE56_00545 PF00534 Glycosyl transferases group 1 GCE56_00545 PF13439 Glycosyltransferase Family 4 GCE56_00550 PF01075 Glycosyltransferase family 9 (heptosyltransferase) GCE56_00565 PF01075 Glycosyltransferase family 9 (heptosyltransferase) GCE56_00570 PF01075 Glycosyltransferase family 9 (heptosyltransferase) GCE56_00575 PF01370 NAD dependent epimerase/dehydratase family GCE56_00580 PF00155 Aminotransferase class I and II GCE56_00585 PF00107 Zinc-binding dehydrogenase GCE56_00585 PF08240 Alcohol dehydrogenase GroES-like domain GCE56_00595 PF04748 Divergent polysaccharide deacetylase GCE56_00600 PF01551 Peptidase family M23 GCE56_00605 PF04055 Radical SAM superfamily GCE56_00605 PF00919 Uncharacterized protein family UPF0004 GCE56_00605 PF18693 TRAM domain GCE56_00615 PF00581 Rhodanese-like domain GCE56_00620 PF02556 Preprotein translocase subunit SecB GCE56_00625 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus GCE56_00625 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GCE56_00630 PF06426 Serine acetyltransferase, N-terminal GCE56_00630 PF00132 Bacterial transferase hexapeptide (six repeats) GCE56_00635 PF06426 Serine acetyltransferase, N-terminal GCE56_00635 PF00132 Bacterial transferase hexapeptide (six repeats) GCE56_00640 PF00535 Glycosyl transferase family 2 GCE56_00645 PF00588 SpoU rRNA Methylase family GCE56_00650 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GCE56_00650 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GCE56_00650 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GCE56_00655 PF00535 Glycosyl transferase family 2 GCE56_00675 PF04991 LicD family GCE56_00685 PF08942 Domain of unknown function (DUF1919) GCE56_00690 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GCE56_00695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_00695 PF00512 His Kinase A (phospho-acceptor) domain GCE56_00695 PF00672 HAMP domain GCE56_00695 PF16527 Two-component sensor protein CpxA, periplasmic domain GCE56_00700 PF00072 Response regulator receiver domain GCE56_00700 PF00486 Transcriptional regulatory protein, C terminal GCE56_00705 PF07813 LTXXQ motif family protein GCE56_00710 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) GCE56_00725 PF00365 Phosphofructokinase GCE56_00735 PF00121 Triosephosphate isomerase GCE56_00740 PF07305 Protein of unknown function (DUF1454) GCE56_00745 PF05656 Protein of unknown function (DUF805) GCE56_00750 PF00970 Oxidoreductase FAD-binding domain GCE56_00750 PF00175 Oxidoreductase NAD-binding domain GCE56_00755 PF07690 Major Facilitator Superfamily GCE56_00760 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GCE56_00760 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GCE56_00765 PF00230 Major intrinsic protein GCE56_00770 PF06005 Cell division protein ZapB GCE56_00775 PF03737 Aldolase/RraA GCE56_00780 PF01040 UbiA prenyltransferase family GCE56_00785 PF10431 C-terminal, D2-small domain, of ClpB protein GCE56_00785 PF07724 AAA domain (Cdc48 subfamily) GCE56_00785 PF00004 ATPase family associated with various cellular activities (AAA) GCE56_00790 PF00227 Proteasome subunit GCE56_00795 PF05036 Sporulation related domain GCE56_00800 PF00356 Bacterial regulatory proteins, lacI family GCE56_00805 PF18319 PriA DNA helicase Cys-rich region (CRR) domain GCE56_00805 PF17764 3′ DNA-binding domain (3′BD) GCE56_00805 PF00270 DEAD/DEAH box helicase GCE56_00805 PF18074 Primosomal protein N C-terminal domain GCE56_00805 PF00271 Helicase conserved C-terminal domain GCE56_00810 PF01197 Ribosomal protein L31 GCE56_00820 PF01340 Met Apo-repressor, MetJ GCE56_00825 PF01053 Cys/Met metabolism PLP-dependent enzyme GCE56_00830 PF00696 Amino acid kinase family GCE56_00830 PF00742 Homoserine dehydrogenase GCE56_00830 PF03447 Homoserine dehydrogenase, NAD binding domain GCE56_00835 PF03350 Uncharacterized protein family, UPF0114 GCE56_00845 PF00311 Phosphoenolpyruvate carboxylase GCE56_00850 PF00535 Glycosyl transferase family 2 GCE56_00855 PF03441 FAD binding domain of DNA photolyase GCE56_00855 PF00875 DNA photolyase GCE56_00860 PF08946 Osmosensory transporter coiled coil GCE56_00860 PF00083 Sugar (and other) transporter GCE56_00865 PF03466 LysR substrate binding domain GCE56_00865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_00870 PF07687 Peptidase dimerisation domain GCE56_00870 PF01546 Peptidase family M20/M25/M40 GCE56_00885 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GCE56_00885 PF00205 Thiamine pyrophosphate enzyme, central domain GCE56_00885 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GCE56_00890 PF07687 Peptidase dimerisation domain GCE56_00890 PF01546 Peptidase family M20/M25/M40 GCE56_00895 PF01118 Semialdehyde dehydrogenase, NAD binding domain GCE56_00895 PF02774 Semialdehyde dehydrogenase, dimerisation domain GCE56_00900 PF00696 Amino acid kinase family GCE56_00905 PF00764 Arginosuccinate synthase GCE56_00910 PF14698 Argininosuccinate lyase C-terminal GCE56_00910 PF00206 Lyase GCE56_00915 PF03466 LysR substrate binding domain GCE56_00915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_00920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GCE56_00920 PF07992 Pyridine nucleotide-disulphide oxidoreductase GCE56_00925 PF00440 Bacterial regulatory proteins, tetR family GCE56_00930 PF07226 Protein of unknown function (DUF1422) GCE56_00935 PF05958 tRNA (Uracil-5-)-methyltransferase GCE56_00940 PF00593 TonB dependent receptor GCE56_00940 PF07715 TonB-dependent Receptor Plug Domain GCE56_00945 PF01177 Asp/Glu/Hydantoin racemase GCE56_00980 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain GCE56_00980 PF01565 FAD binding domain GCE56_00985 PF08279 HTH domain GCE56_00985 PF03099 Biotin/lipoate A/B protein ligase family GCE56_00985 PF02237 Biotin protein ligase C terminal domain GCE56_00990 PF00485 Phosphoribulokinase / Uridine kinase family GCE56_01020 PF00009 Elongation factor Tu GTP binding domain GCE56_01020 PF03143 Elongation factor Tu C-terminal domain GCE56_01020 PF03144 Elongation factor Tu domain 2 GCE56_01025 PF04324 BFD-like [2Fe-2S] binding domain GCE56_01030 PF00210 Ferritin-like domain GCE56_01035 PF00338 Ribosomal protein S10p/S20e GCE56_01040 PF00297 Ribosomal protein L3 GCE56_01045 PF00573 Ribosomal protein L4/L1 family GCE56_01050 PF00276 Ribosomal protein L23 GCE56_01055 PF00181 Ribosomal Proteins L2, RNA binding domain GCE56_01055 PF03947 Ribosomal Proteins L2, C-terminal domain GCE56_01060 PF00203 Ribosomal protein S19 GCE56_01065 PF00237 Ribosomal protein L22p/L17e GCE56_01070 PF07650 KH domain GCE56_01070 PF00189 Ribosomal protein S3, C-terminal domain GCE56_01075 PF00252 Ribosomal protein L16p/L10e GCE56_01080 PF00831 Ribosomal L29 protein GCE56_01085 PF00366 Ribosomal protein S17 GCE56_01090 PF00238 Ribosomal protein L14p/L23e GCE56_01095 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 GCE56_01100 PF00281 Ribosomal protein L5 GCE56_01100 PF00673 ribosomal L5P family C-terminus GCE56_01105 PF00253 Ribosomal protein S14p/S29e GCE56_01110 PF00410 Ribosomal protein S8 GCE56_01115 PF00347 Ribosomal protein L6 GCE56_01120 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast GCE56_01125 PF00333 Ribosomal protein S5, N-terminal domain GCE56_01125 PF03719 Ribosomal protein S5, C-terminal domain GCE56_01130 PF00327 Ribosomal protein L30p/L7e GCE56_01135 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A GCE56_01140 PF00344 SecY translocase GCE56_01145 PF00444 Ribosomal protein L36 GCE56_01150 PF00416 Ribosomal protein S13/S18 GCE56_01155 PF00411 Ribosomal protein S11 GCE56_01160 PF01479 S4 domain GCE56_01160 PF00163 Ribosomal protein S4/S9 N-terminal domain GCE56_01165 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain GCE56_01165 PF01000 RNA polymerase Rpb3/RpoA insert domain GCE56_01165 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain GCE56_01170 PF01196 Ribosomal protein L17 GCE56_01175 PF13411 MerR HTH family regulatory protein GCE56_01180 PF03889 Alternative ribosome-rescue factor A GCE56_01185 PF01741 Large-conductance mechanosensitive channel, MscL GCE56_01190 PF02080 TrkA-C domain GCE56_01190 PF02254 TrkA-N domain GCE56_01195 PF01029 NusB family GCE56_01195 PF01189 16S rRNA methyltransferase RsmB/F GCE56_01200 PF02911 Formyl transferase, C-terminal domain GCE56_01200 PF00551 Formyl transferase GCE56_01205 PF01327 Polypeptide deformylase GCE56_01210 PF17782 DprA winged helix domain GCE56_01210 PF02481 DNA recombination-mediator protein A GCE56_01215 PF01396 Topoisomerase DNA binding C4 zinc finger GCE56_01220 PF01300 Telomere recombination GCE56_01225 PF08501 Shikimate dehydrogenase substrate binding domain GCE56_01225 PF18317 Shikimate 5'-dehydrogenase C-terminal domain GCE56_01225 PF01488 Shikimate / quinate 5-dehydrogenase GCE56_01230 PF07369 Protein of unknown function (DUF1488) GCE56_01235 PF00132 Bacterial transferase hexapeptide (six repeats) GCE56_01275 PF03466 LysR substrate binding domain GCE56_01275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_01280 PF04219 Protein of unknown function, DUF GCE56_01285 PF13335 Magnesium chelatase, subunit ChlI C-terminal GCE56_01285 PF01078 Magnesium chelatase, subunit ChlI GCE56_01290 PF08046 IlvGEDA operon leader peptide GCE56_01295 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GCE56_01295 PF00205 Thiamine pyrophosphate enzyme, central domain GCE56_01295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GCE56_01305 PF01063 Amino-transferase class IV GCE56_01310 PF00920 Dehydratase family GCE56_01315 PF00585 C-terminal regulatory domain of Threonine dehydratase GCE56_01315 PF00291 Pyridoxal-phosphate dependent enzyme GCE56_01320 PF03466 LysR substrate binding domain GCE56_01320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_01325 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain GCE56_01325 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain GCE56_01335 PF07282 Putative transposase DNA-binding domain GCE56_01335 PF01385 Probable transposase GCE56_01335 PF12323 Helix-turn-helix domain GCE56_01340 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ GCE56_01350 PF00580 UvrD/REP helicase N-terminal domain GCE56_01350 PF13361 UvrD-like helicase C-terminal domain GCE56_01355 PF02541 Ppx/GppA phosphatase family GCE56_01360 PF00270 DEAD/DEAH box helicase GCE56_01360 PF00271 Helicase conserved C-terminal domain GCE56_01365 PF00085 Thioredoxin GCE56_01370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GCE56_01370 PF07497 Rho termination factor, RNA-binding domain GCE56_01370 PF07498 Rho termination factor, N-terminal domain GCE56_01375 PF00953 Glycosyl transferase family 4 GCE56_01380 PF02706 Chain length determinant protein GCE56_01385 PF02350 UDP-N-acetylglucosamine 2-epimerase GCE56_01390 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GCE56_01390 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GCE56_01390 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GCE56_01395 PF16363 GDP-mannose 4,6 dehydratase GCE56_01400 PF00483 Nucleotidyl transferase GCE56_01410 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GCE56_01415 PF01943 Polysaccharide biosynthesis protein GCE56_01420 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 GCE56_01425 PF06899 WzyE protein, O-antigen assembly polymerase GCE56_01430 PF03808 Glycosyl transferase WecB/TagA/CpsF family GCE56_01460 PF07719 Tetratricopeptide repeat GCE56_01460 PF07219 HemY protein N-terminus GCE56_01465 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase GCE56_01470 PF02602 Uroporphyrinogen-III synthase HemD GCE56_01475 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain GCE56_01475 PF03900 Porphobilinogen deaminase, C-terminal domain GCE56_01480 PF01295 Adenylate cyclase, class-I GCE56_01480 PF12633 Adenylate cyclase NT domain GCE56_01485 PF01491 Frataxin-like domain GCE56_01490 PF13627 Prokaryotic lipoprotein-attachment site GCE56_01495 PF01678 Diaminopimelate epimerase GCE56_01500 PF04340 Protein of unknown function, DUF484 GCE56_01505 PF00589 Phage integrase family GCE56_01505 PF02899 Phage integrase, N-terminal SAM-like domain GCE56_01510 PF13419 Haloacid dehalogenase-like hydrolase GCE56_01515 PF00580 UvrD/REP helicase N-terminal domain GCE56_01515 PF13361 UvrD-like helicase C-terminal domain GCE56_01525 PF00892 EamA-like transporter family GCE56_01530 PF03061 Thioesterase superfamily GCE56_01535 PF02253 Phospholipase A1 GCE56_01540 PF00270 DEAD/DEAH box helicase GCE56_01540 PF00271 Helicase conserved C-terminal domain GCE56_01540 PF00570 HRDC domain GCE56_01540 PF16124 RecQ zinc-binding GCE56_01540 PF09382 RQC domain GCE56_01545 PF12146 Serine aminopeptidase, S33 GCE56_01560 PF00577 Outer membrane usher protein GCE56_01560 PF13954 PapC N-terminal domain GCE56_01560 PF13953 PapC C-terminal domain GCE56_01565 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_01565 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_01570 PF00419 Fimbrial protein GCE56_01580 PF00924 Mechanosensitive ion channel GCE56_01580 PF12795 Mechanosensitive ion channel porin domain GCE56_01580 PF12794 Mechanosensitive ion channel inner membrane domain 1 GCE56_01585 PF02666 Phosphatidylserine decarboxylase GCE56_01590 PF03193 RsgA GTPase GCE56_01595 PF00929 Exonuclease GCE56_01625 PF08331 Domain of unknown function (DUF1730) GCE56_01630 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE GCE56_01635 PF01520 N-acetylmuramoyl-L-alanine amidase GCE56_01640 PF08676 MutL C terminal dimerisation domain GCE56_01640 PF01119 DNA mismatch repair protein, C-terminal domain GCE56_01650 PF17209 Hfq protein GCE56_01655 PF01926 50S ribosome-binding GTPase GCE56_01655 PF13167 GTP-binding GTPase N-terminal GCE56_01655 PF16360 GTP-binding GTPase Middle Region GCE56_01660 PF01145 SPFH domain / Band 7 family GCE56_01660 PF12221 Bacterial membrane protein N terminal GCE56_01665 PF01145 SPFH domain / Band 7 family GCE56_01670 PF00709 Adenylosuccinate synthetase GCE56_01675 PF02082 Transcriptional regulator GCE56_01680 PF00575 S1 RNA binding domain GCE56_01680 PF00773 RNB domain GCE56_01680 PF08206 Ribonuclease B OB domain GCE56_01680 PF08461 Ribonuclease R winged-helix domain GCE56_01680 PF17876 Cold shock domain GCE56_01685 PF08032 RNA 2'-O ribose methyltransferase substrate binding GCE56_01685 PF00588 SpoU rRNA Methylase family GCE56_01690 PF01250 Ribosomal protein S6 GCE56_01695 PF00436 Single-strand binding protein family GCE56_01700 PF01084 Ribosomal protein S18 GCE56_01705 PF01281 Ribosomal protein L9, N-terminal domain GCE56_01705 PF03948 Ribosomal protein L9, C-terminal domain GCE56_01710 PF04225 Opacity-associated protein A LysM-like domain GCE56_01710 PF08525 Opacity-associated protein A N-terminal motif GCE56_01715 PF01197 Ribosomal protein L31 GCE56_01720 PF00444 Ribosomal protein L36 GCE56_01725 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment GCE56_01730 PF00171 Aldehyde dehydrogenase family GCE56_01735 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GCE56_01735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GCE56_01740 PF00459 Inositol monophosphatase family GCE56_01745 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) GCE56_01750 PF06526 Protein of unknown function (DUF1107) GCE56_01755 PF00571 CBS domain GCE56_01755 PF03471 Transporter associated domain GCE56_01755 PF01595 Cyclin M transmembrane N-terminal domain GCE56_01760 PF01625 Peptide methionine sulfoxide reductase GCE56_01765 PF01103 Surface antigen GCE56_01765 PF07244 Surface antigen variable number repeat GCE56_01765 PF17243 POTRA domain TamA domain 1 GCE56_01770 PF04357 TamB, inner membrane protein subunit of TAM complex GCE56_01775 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like GCE56_01795 PF00719 Inorganic pyrophosphatase GCE56_01800 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain GCE56_01805 PF08245 Mur ligase middle domain GCE56_01805 PF02875 Mur ligase family, glutamate ligase domain GCE56_01805 PF01225 Mur ligase family, catalytic domain GCE56_01810 PF02863 Arginine repressor, C-terminal domain GCE56_01810 PF01316 Arginine repressor, DNA binding domain GCE56_01815 PF00056 lactate/malate dehydrogenase, NAD binding domain GCE56_01815 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain GCE56_01820 PF13693 Winged helix-turn-helix DNA-binding GCE56_01835 PF00348 Polyprenyl synthetase GCE56_01840 PF00829 Ribosomal prokaryotic L21 protein GCE56_01845 PF01016 Ribosomal L27 protein GCE56_01850 PF01926 50S ribosome-binding GTPase GCE56_01850 PF01018 GTP1/OBG GCE56_01855 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family GCE56_01860 PF03449 Transcription elongation factor, N-terminal GCE56_01860 PF01272 Transcription elongation factor, GreA/GreB, C-term GCE56_01865 PF01985 CRS1 / YhbY (CRM) domain GCE56_01870 PF01728 FtsJ-like methyltransferase GCE56_01875 PF00004 ATPase family associated with various cellular activities (AAA) GCE56_01875 PF17862 AAA+ lid domain GCE56_01875 PF06480 FtsH Extracellular GCE56_01875 PF01434 Peptidase family M41 GCE56_01880 PF00809 Pterin binding enzyme GCE56_01885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GCE56_01885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GCE56_01885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GCE56_01885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GCE56_01890 PF03840 Preprotein translocase SecG subunit GCE56_01905 PF02576 RimP N-terminal domain GCE56_01905 PF17384 RimP C-terminal SH3 domain GCE56_01910 PF08529 NusA N-terminal domain GCE56_01910 PF00575 S1 RNA binding domain GCE56_01910 PF13184 NusA-like KH domain GCE56_01915 PF04760 Translation initiation factor IF-2, N-terminal region GCE56_01915 PF03144 Elongation factor Tu domain 2 GCE56_01915 PF08364 Bacterial translation initiation factor IF-2 associated region GCE56_01915 PF11987 Translation-initiation factor 2 GCE56_01915 PF00009 Elongation factor Tu GTP binding domain GCE56_01920 PF02033 Ribosome-binding factor A GCE56_01925 PF01509 TruB family pseudouridylate synthase (N terminal domain) GCE56_01925 PF16198 tRNA pseudouridylate synthase B C-terminal domain GCE56_01925 PF09157 Pseudouridine synthase II TruB, C-terminal GCE56_01930 PF00312 Ribosomal protein S15 GCE56_01935 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain GCE56_01935 PF01138 3' exoribonuclease family, domain 1 GCE56_01935 PF03725 3' exoribonuclease family, domain 2 GCE56_01935 PF00575 S1 RNA binding domain GCE56_01935 PF00013 KH domain GCE56_01940 PF07719 Tetratricopeptide repeat GCE56_01940 PF13181 Tetratricopeptide repeat GCE56_01945 PF12343 Cold shock protein DEAD box A GCE56_01945 PF00270 DEAD/DEAH box helicase GCE56_01945 PF03880 DbpA RNA binding domain GCE56_01945 PF00271 Helicase conserved C-terminal domain GCE56_01950 PF13309 HTH domain GCE56_01950 PF08348 YheO-like PAS domain GCE56_01960 PF01042 Endoribonuclease L-PSP GCE56_01965 PF07690 Major Facilitator Superfamily GCE56_01990 PF04397 LytTr DNA-binding domain GCE56_01990 PF00072 Response regulator receiver domain GCE56_01995 PF06580 Histidine kinase GCE56_01995 PF07694 5TMR of 5TMR-LYT GCE56_02000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCE56_02000 PF00529 HlyD membrane-fusion protein of T1SS GCE56_02015 PF00419 Fimbrial protein GCE56_02020 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_02020 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_02025 PF00577 Outer membrane usher protein GCE56_02025 PF13954 PapC N-terminal domain GCE56_02025 PF13953 PapC C-terminal domain GCE56_02030 PF00419 Fimbrial protein GCE56_02040 PF09160 FimH, mannose binding GCE56_02045 PF01136 Peptidase family U32 GCE56_02050 PF01136 Peptidase family U32 GCE56_02055 PF02036 SCP-2 sterol transfer family GCE56_02060 PF13508 Acetyltransferase (GNAT) domain GCE56_02065 PF01541 GIY-YIG catalytic domain GCE56_02070 PF07338 Protein of unknown function (DUF1471) GCE56_02095 PF03477 ATP cone domain GCE56_02095 PF13597 Anaerobic ribonucleoside-triphosphate reductase GCE56_02105 PF01042 Endoribonuclease L-PSP GCE56_02110 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain GCE56_02110 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain GCE56_02115 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GCE56_02115 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GCE56_02125 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GCE56_02125 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GCE56_02135 PF06877 Regulator of ribonuclease activity B GCE56_02140 PF05726 Pirin C-terminal cupin domain GCE56_02140 PF02678 Pirin GCE56_02145 PF13978 Protein of unknown function (DUF4223) GCE56_02150 PF00583 Acetyltransferase (GNAT) family GCE56_02155 PF10458 Valyl tRNA synthetase tRNA binding arm GCE56_02155 PF00133 tRNA synthetases class I (I, L, M and V) GCE56_02155 PF08264 Anticodon-binding domain of tRNA GCE56_02160 PF04364 DNA polymerase III chi subunit, HolC GCE56_02165 PF02789 Cytosol aminopeptidase family, N-terminal domain GCE56_02165 PF00883 Cytosol aminopeptidase family, catalytic domain GCE56_02170 PF03739 Lipopolysaccharide export system permease LptF/LptG GCE56_02175 PF03739 Lipopolysaccharide export system permease LptF/LptG GCE56_02180 PF00144 Beta-lactamase GCE56_02195 PF01797 Transposase IS200 like GCE56_02200 PF01385 Probable transposase GCE56_02200 PF07282 Putative transposase DNA-binding domain GCE56_02200 PF12323 Helix-turn-helix domain GCE56_02215 PF00472 RF-1 domain GCE56_02225 PF08220 DeoR-like helix-turn-helix domain GCE56_02225 PF00455 DeoR C terminal sensor domain GCE56_02230 PF01791 DeoC/LacD family aldolase GCE56_02235 PF00294 pfkB family carbohydrate kinase GCE56_02240 PF13580 SIS domain GCE56_02245 PF02378 Phosphotransferase system, EIIC GCE56_02245 PF00367 phosphotransferase system, EIIB GCE56_02250 PF01380 SIS domain GCE56_02250 PF01418 Helix-turn-helix domain, rpiR family GCE56_02265 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GCE56_02265 PF00205 Thiamine pyrophosphate enzyme, central domain GCE56_02265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GCE56_02270 PF01842 ACT domain GCE56_02275 PF01545 Cation efflux family GCE56_02290 PF00860 Permease family GCE56_02295 PF13302 Acetyltransferase (GNAT) domain GCE56_02300 PF00999 Sodium/hydrogen exchanger family GCE56_02305 PF00892 EamA-like transporter family GCE56_02310 PF03466 LysR substrate binding domain GCE56_02310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_02315 PF01717 Cobalamin-independent synthase, Catalytic domain GCE56_02315 PF08267 Cobalamin-independent synthase, N-terminal domain GCE56_02325 PF06078 Bacterial protein of unknown function (DUF937) GCE56_02330 PF01048 Phosphorylase superfamily GCE56_02340 PF09335 SNARE associated Golgi protein GCE56_02345 PF02646 RmuC family GCE56_02350 PF01209 ubiE/COQ5 methyltransferase family GCE56_02355 PF02036 SCP-2 sterol transfer family GCE56_02360 PF03109 ABC1 family GCE56_02365 PF02416 mttA/Hcf106 family GCE56_02375 PF00902 Sec-independent protein translocase protein (TatC) GCE56_02380 PF02357 Transcription termination factor nusG GCE56_02385 PF03575 Peptidase family S51 GCE56_02390 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase GCE56_02395 PF00970 Oxidoreductase FAD-binding domain GCE56_02395 PF00175 Oxidoreductase NAD-binding domain GCE56_02400 PF02803 Thiolase, C-terminal domain GCE56_02400 PF00108 Thiolase, N-terminal domain GCE56_02405 PF00378 Enoyl-CoA hydratase/isomerase GCE56_02405 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GCE56_02405 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GCE56_02410 PF00557 Metallopeptidase family M24 GCE56_02415 PF01205 Uncharacterized protein family UPF0029 GCE56_02415 PF09186 Domain of unknown function (DUF1949) GCE56_02420 PF02386 Cation transport protein GCE56_02425 PF12724 Flavodoxin domain GCE56_02455 PF01566 Natural resistance-associated macrophage protein GCE56_02460 PF03746 LamB/YcsF family GCE56_02465 PF02682 Carboxyltransferase domain, subdomain C and D GCE56_02470 PF00364 Biotin-requiring enzyme GCE56_02470 PF00289 Biotin carboxylase, N-terminal domain GCE56_02470 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GCE56_02470 PF02785 Biotin carboxylase C-terminal domain GCE56_02475 PF01925 Sulfite exporter TauE/SafE GCE56_02490 PF03466 LysR substrate binding domain GCE56_02490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_02495 PF00196 Bacterial regulatory proteins, luxR family GCE56_02495 PF00072 Response regulator receiver domain GCE56_02500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_02500 PF00672 HAMP domain GCE56_02500 PF07730 Histidine kinase GCE56_02500 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term GCE56_02505 PF07690 Major Facilitator Superfamily GCE56_02510 PF00384 Molybdopterin oxidoreductase GCE56_02510 PF01568 Molydopterin dinucleotide binding domain GCE56_02510 PF14710 Respiratory nitrate reductase alpha N-terminal GCE56_02515 PF13247 4Fe-4S dicluster domain GCE56_02515 PF14711 Respiratory nitrate reductase beta C-terminal GCE56_02520 PF02613 Nitrate reductase delta subunit GCE56_02525 PF02665 Nitrate reductase gamma subunit GCE56_02530 PF01070 FMN-dependent dehydrogenase GCE56_02535 PF00884 Sulfatase GCE56_02535 PF08019 Phosphoethanolamine transferase EptA/EptB GCE56_02550 PF01590 GAF domain GCE56_02550 PF00158 Sigma-54 interaction domain GCE56_02555 PF00037 4Fe-4S binding domain GCE56_02555 PF12798 4Fe-4S binding domain GCE56_02560 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GCE56_02565 PF01455 HupF/HypC family GCE56_02570 PF00893 Small Multidrug Resistance protein GCE56_02575 PF02313 Fumarate reductase subunit D GCE56_02580 PF02300 Fumarate reductase subunit C GCE56_02585 PF13085 2Fe-2S iron-sulfur cluster binding domain GCE56_02585 PF13183 4Fe-4S dicluster domain GCE56_02590 PF00890 FAD binding domain GCE56_02590 PF02910 Fumarate reductase flavoprotein C-term GCE56_02595 PF00152 tRNA synthetases class II (D, K and N) GCE56_02600 PF03009 Glycerophosphoryl diester phosphodiesterase family GCE56_02610 PF04324 BFD-like [2Fe-2S] binding domain GCE56_02610 PF01266 FAD dependent oxidoreductase GCE56_02615 PF00890 FAD binding domain GCE56_02620 PF02754 Cysteine-rich domain GCE56_02620 PF13183 4Fe-4S dicluster domain GCE56_02625 PF00465 Iron-containing alcohol dehydrogenase GCE56_02630 PF02592 Putative vitamin uptake transporter GCE56_02640 PF01206 Sulfurtransferase TusA GCE56_02645 PF00529 HlyD membrane-fusion protein of T1SS GCE56_02645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCE56_02650 PF00873 AcrB/AcrD/AcrF family GCE56_02655 PF00403 Heavy-metal-associated domain GCE56_02660 PF07947 YhhN family GCE56_02670 PF06611 Protein of unknown function (DUF1145) GCE56_02680 PF02881 SRP54-type protein, helical bundle domain GCE56_02680 PF00448 SRP54-type protein, GTPase domain GCE56_02685 PF00005 ABC transporter GCE56_02690 PF02687 FtsX-like permease family GCE56_02690 PF18075 FtsX extracellular domain GCE56_02695 PF04542 Sigma-70 region 2 GCE56_02695 PF04545 Sigma-70, region 4 GCE56_02695 PF00140 Sigma-70 factor, region 1.2 GCE56_02700 PF02595 Glycerate kinase family GCE56_02705 PF12568 Acetyltransferase (GNAT) domain, PanZ GCE56_02710 PF07690 Major Facilitator Superfamily GCE56_02715 PF01047 MarR family GCE56_02720 PF01435 Peptidase family M48 GCE56_02725 PF17912 MalK OB fold domain GCE56_02725 PF00005 ABC transporter GCE56_02730 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_02735 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_02740 PF13416 Bacterial extracellular solute-binding protein GCE56_02745 PF03009 Glycerophosphoryl diester phosphodiesterase family GCE56_02750 PF07690 Major Facilitator Superfamily GCE56_02775 PF02954 Bacterial regulatory protein, Fis family GCE56_02780 PF01207 Dihydrouridine synthase (Dus) GCE56_02790 PF00474 Sodium:solute symporter family GCE56_02795 PF06196 Protein of unknown function (DUF997) GCE56_02800 PF00289 Biotin carboxylase, N-terminal domain GCE56_02800 PF02785 Biotin carboxylase C-terminal domain GCE56_02800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GCE56_02805 PF00364 Biotin-requiring enzyme GCE56_02810 PF01220 Dehydroquinase class II GCE56_02815 PF08240 Alcohol dehydrogenase GroES-like domain GCE56_02815 PF00107 Zinc-binding dehydrogenase GCE56_02825 PF04085 rod shape-determining protein MreC GCE56_02830 PF04093 rod shape-determining protein MreD GCE56_02835 PF02545 Maf-like protein GCE56_02840 PF10150 Ribonuclease E/G family GCE56_02840 PF00575 S1 RNA binding domain GCE56_02845 PF13502 AsmA-like C-terminal region GCE56_02845 PF13116 Protein of unknown function GCE56_02850 PF00795 Carbon-nitrogen hydrolase GCE56_02855 PF01523 Putative modulator of DNA gyrase GCE56_02865 PF01337 Barstar (barnase inhibitor) GCE56_02870 PF04751 Protein of unknown function (DUF615) GCE56_02875 PF01523 Putative modulator of DNA gyrase GCE56_02880 PF01272 Transcription elongation factor, GreA/GreB, C-term GCE56_02880 PF14760 Rnk N-terminus GCE56_02885 PF00381 PTS HPr component phosphorylation site GCE56_02890 PF03668 P-loop ATPase protein family GCE56_02895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GCE56_02900 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein GCE56_02905 PF00309 Sigma-54 factor, Activator interacting domain (AID) GCE56_02905 PF04963 Sigma-54 factor, core binding domain GCE56_02905 PF04552 Sigma-54, DNA binding domain GCE56_02910 PF12399 Branched-chain amino acid ATP-binding cassette transporter GCE56_02910 PF00005 ABC transporter GCE56_02915 PF03968 OstA-like protein GCE56_02920 PF06835 Lipopolysaccharide-assembly, LptC-related GCE56_02930 PF00571 CBS domain GCE56_02930 PF01380 SIS domain GCE56_02935 PF01699 Sodium/calcium exchanger protein GCE56_02940 PF00005 ABC transporter GCE56_02945 PF02405 Permease MlaE GCE56_02950 PF02470 MlaD protein GCE56_02955 PF05494 MlaC protein GCE56_02965 PF01722 BolA-like protein GCE56_02970 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GCE56_02990 PF13180 PDZ domain GCE56_02995 PF00595 PDZ domain GCE56_02995 PF13180 PDZ domain GCE56_03000 PF06295 Protein of unknown function (DUF1043) GCE56_03005 PF03969 AFG1-like ATPase GCE56_03010 PF00572 Ribosomal protein L13 GCE56_03015 PF00380 Ribosomal protein S9/S16 GCE56_03020 PF00043 Glutathione S-transferase, C-terminal domain GCE56_03020 PF02798 Glutathione S-transferase, N-terminal domain GCE56_03025 PF04386 Stringent starvation protein B GCE56_03030 PF13411 MerR HTH family regulatory protein GCE56_03035 PF01546 Peptidase family M20/M25/M40 GCE56_03035 PF07687 Peptidase dimerisation domain GCE56_03040 PF03606 C4-dicarboxylate anaerobic carrier GCE56_03045 PF07992 Pyridine nucleotide-disulphide oxidoreductase GCE56_03045 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GCE56_03050 PF01493 GXGXG motif GCE56_03050 PF01645 Conserved region in glutamate synthase GCE56_03050 PF00310 Glutamine amidotransferases class-II GCE56_03050 PF04898 Glutamate synthase central domain GCE56_03055 PF00989 PAS fold GCE56_03055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_03055 PF00512 His Kinase A (phospho-acceptor) domain GCE56_03055 PF18415 Histidine kinase receptor ArcB trans-membrane domain GCE56_03055 PF01627 Hpt domain GCE56_03055 PF00072 Response regulator receiver domain GCE56_03065 PF00912 Transglycosylase GCE56_03070 PF12833 Helix-turn-helix domain GCE56_03075 PF01774 UreD urease accessory protein GCE56_03080 PF00547 Urease, gamma subunit GCE56_03085 PF00699 Urease beta subunit GCE56_03090 PF00449 Urease alpha-subunit, N-terminal domain GCE56_03090 PF01979 Amidohydrolase family GCE56_03095 PF02814 UreE urease accessory protein, N-terminal domain GCE56_03095 PF05194 UreE urease accessory protein, C-terminal domain GCE56_03100 PF01730 UreF GCE56_03105 PF02492 CobW/HypB/UreG, nucleotide-binding domain GCE56_03110 PF04972 BON domain GCE56_03115 PF13580 SIS domain GCE56_03120 PF02021 Uncharacterised protein family UPF0102 GCE56_03125 PF04348 LppC putative lipoprotein GCE56_03130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GCE56_03140 PF17954 Quercetinase C-terminal cupin domain GCE56_03140 PF02678 Pirin GCE56_03145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_03145 PF03466 LysR substrate binding domain GCE56_03150 PF07681 DoxX GCE56_03160 PF07332 Putative Actinobacterial Holin-X, holin superfamily III GCE56_03165 PF05957 Bacterial protein of unknown function (DUF883) GCE56_03170 PF09335 SNARE associated Golgi protein GCE56_03175 PF00375 Sodium:dicarboxylate symporter family GCE56_03180 PF07992 Pyridine nucleotide-disulphide oxidoreductase GCE56_03180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GCE56_03190 PF00675 Insulinase (Peptidase family M16) GCE56_03190 PF05193 Peptidase M16 inactive domain GCE56_03195 PF06472 ABC transporter transmembrane region 2 GCE56_03195 PF00005 ABC transporter GCE56_03200 PF07715 TonB-dependent Receptor Plug Domain GCE56_03210 PF04542 Sigma-70 region 2 GCE56_03210 PF08281 Sigma-70, region 4 GCE56_03220 PF07282 Putative transposase DNA-binding domain GCE56_03220 PF01385 Probable transposase GCE56_03220 PF12323 Helix-turn-helix domain GCE56_03225 PF01797 Transposase IS200 like GCE56_03230 PF12848 ABC transporter GCE56_03230 PF00005 ABC transporter GCE56_03235 PF01464 Transglycosylase SLT domain GCE56_03235 PF14718 Soluble lytic murein transglycosylase L domain GCE56_03240 PF01371 Trp repressor protein GCE56_03245 PF01931 Protein of unknown function DUF84 GCE56_03250 PF00300 Histidine phosphatase superfamily (branch 1) GCE56_03255 PF06445 GyrI-like small molecule binding domain GCE56_03255 PF12833 Helix-turn-helix domain GCE56_03260 PF05981 CreA protein GCE56_03265 PF00486 Transcriptional regulatory protein, C terminal GCE56_03265 PF00072 Response regulator receiver domain GCE56_03270 PF03447 Homoserine dehydrogenase, NAD binding domain GCE56_03270 PF00742 Homoserine dehydrogenase GCE56_03270 PF13840 ACT domain GCE56_03270 PF01842 ACT domain GCE56_03270 PF00696 Amino acid kinase family GCE56_03275 PF00288 GHMP kinases N terminal domain GCE56_03275 PF08544 GHMP kinases C terminal GCE56_03280 PF14821 Threonine synthase N terminus GCE56_03280 PF00291 Pyridoxal-phosphate dependent enzyme GCE56_03290 PF03883 Peroxide stress protein YaaA GCE56_03295 PF00923 Transaldolase/Fructose-6-phosphate aldolase GCE56_03305 PF00994 Probable molybdopterin binding domain GCE56_03310 PF00012 Hsp70 protein GCE56_03315 PF00684 DnaJ central domain GCE56_03315 PF01556 DnaJ C terminal domain GCE56_03315 PF00226 DnaJ domain GCE56_03320 PF06965 Na+/H+ antiporter 1 GCE56_03325 PF03466 LysR substrate binding domain GCE56_03325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_03330 PF01649 Ribosomal protein S20 GCE56_03340 PF01687 Riboflavin kinase GCE56_03340 PF06574 FAD synthetase GCE56_03345 PF00133 tRNA synthetases class I (I, L, M and V) GCE56_03345 PF06827 Zinc finger found in FPG and IleRS GCE56_03345 PF08264 Anticodon-binding domain of tRNA GCE56_03350 PF01252 Signal peptidase (SPase) II GCE56_03355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GCE56_03360 PF02401 LytB protein GCE56_03365 PF01113 Dihydrodipicolinate reductase, N-terminus GCE56_03365 PF05173 Dihydrodipicolinate reductase, C-terminus GCE56_03370 PF00117 Glutamine amidotransferase class-I GCE56_03370 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain GCE56_03375 PF02142 MGS-like domain GCE56_03375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GCE56_03375 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GCE56_03385 PF09134 Invasin, domain 3 GCE56_03385 PF11924 Inverse autotransporter, beta-domain GCE56_03385 PF02369 Bacterial Ig-like domain (group 1) GCE56_03390 PF00248 Aldo/keto reductase family GCE56_03395 PF00465 Iron-containing alcohol dehydrogenase GCE56_03400 PF09335 SNARE associated Golgi protein GCE56_03405 PF01053 Cys/Met metabolism PLP-dependent enzyme GCE56_03410 PF01618 MotA/TolQ/ExbB proton channel family GCE56_03415 PF02472 Biopolymer transport protein ExbD/TolR GCE56_03425 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit GCE56_03425 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal GCE56_03430 PF13247 4Fe-4S dicluster domain GCE56_03435 PF03916 Polysulphide reductase, NrfD GCE56_03440 PF00374 Nickel-dependent hydrogenase GCE56_03445 PF01750 Hydrogenase maturation protease GCE56_03450 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE GCE56_03455 PF02492 CobW/HypB/UreG, nucleotide-binding domain GCE56_03460 PF01455 HupF/HypC family GCE56_03465 PF01924 Hydrogenase formation hypA family GCE56_03470 PF00586 AIR synthase related protein, N-terminal domain GCE56_03470 PF02769 AIR synthase related protein, C-terminal domain GCE56_03475 PF04143 Sulphur transport GCE56_03480 PF01206 Sulfurtransferase TusA GCE56_03485 PF04381 Putative exonuclease, RdgC GCE56_03490 PF13609 Gram-negative porin GCE56_03495 PF00149 Calcineurin-like phosphoesterase GCE56_03495 PF02872 5'-nucleotidase, C-terminal domain GCE56_03500 PF00445 Ribonuclease T2 family GCE56_03505 PF02872 5'-nucleotidase, C-terminal domain GCE56_03505 PF00149 Calcineurin-like phosphoesterase GCE56_03505 PF17936 Bacterial Ig domain GCE56_03520 PF13476 AAA domain GCE56_03525 PF00149 Calcineurin-like phosphoesterase GCE56_03525 PF12320 Type 5 capsule protein repressor C-terminal domain GCE56_03530 PF00072 Response regulator receiver domain GCE56_03530 PF00486 Transcriptional regulatory protein, C terminal GCE56_03535 PF00512 His Kinase A (phospho-acceptor) domain GCE56_03535 PF11808 Phosphate regulon sensor protein PhoR GCE56_03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_03535 PF00989 PAS fold GCE56_03540 PF05525 Branched-chain amino acid transport protein GCE56_03590 PF01292 Prokaryotic cytochrome b561 GCE56_03595 PF13247 4Fe-4S dicluster domain GCE56_03605 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 GCE56_03605 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain GCE56_03610 PF12800 4Fe-4S binding domain GCE56_03610 PF13247 4Fe-4S dicluster domain GCE56_03620 PF10417 C-terminal domain of 1-Cys peroxiredoxin GCE56_03620 PF00578 AhpC/TSA family GCE56_03625 PF04336 Acyl carrier protein phosphodiesterase GCE56_03630 PF02547 Queuosine biosynthesis protein GCE56_03635 PF01702 Queuine tRNA-ribosyltransferase GCE56_03640 PF02699 Preprotein translocase subunit GCE56_03645 PF07549 SecD/SecF GG Motif GCE56_03645 PF13721 SecD export protein N-terminal TM region GCE56_03645 PF02355 Protein export membrane protein GCE56_03650 PF02355 Protein export membrane protein GCE56_03650 PF07549 SecD/SecF GG Motif GCE56_03655 PF03477 ATP cone domain GCE56_03660 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GCE56_03660 PF01872 RibD C-terminal domain GCE56_03665 PF00885 6,7-dimethyl-8-ribityllumazine synthase GCE56_03670 PF01029 NusB family GCE56_03675 PF00586 AIR synthase related protein, N-terminal domain GCE56_03675 PF02769 AIR synthase related protein, C-terminal domain GCE56_03680 PF03831 PhnA domain GCE56_03680 PF08274 PhnA Zinc-Ribbon GCE56_03690 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GCE56_03695 PF00356 Bacterial regulatory proteins, lacI family GCE56_03700 PF00294 pfkB family carbohydrate kinase GCE56_03705 PF13407 Periplasmic binding protein domain GCE56_03710 PF02653 Branched-chain amino acid transport system / permease component GCE56_03720 PF05025 RbsD / FucU transport protein family GCE56_03725 PF02780 Transketolase, C-terminal domain GCE56_03725 PF02779 Transketolase, pyrimidine binding domain GCE56_03725 PF13292 1-deoxy-D-xylulose-5-phosphate synthase GCE56_03730 PF00348 Polyprenyl synthetase GCE56_03735 PF02609 Exonuclease VII small subunit GCE56_03740 PF02926 THUMP domain GCE56_03740 PF02568 Thiamine biosynthesis protein (ThiI) GCE56_03750 PF01965 DJ-1/PfpI family GCE56_03755 PF08546 Ketopantoate reductase PanE/ApbA C terminal GCE56_03755 PF02558 Ketopantoate reductase PanE/ApbA GCE56_03760 PF04461 Protein of unknown function (DUF520) GCE56_03765 PF07690 Major Facilitator Superfamily GCE56_03770 PF01040 UbiA prenyltransferase family GCE56_03775 PF03626 Prokaryotic Cytochrome C oxidase subunit IV GCE56_03780 PF00510 Cytochrome c oxidase subunit III GCE56_03785 PF00115 Cytochrome C and Quinol oxidase polypeptide I GCE56_03790 PF00116 Cytochrome C oxidase subunit II, periplasmic domain GCE56_03790 PF06481 COX Aromatic Rich Motif GCE56_03795 PF03502 Nucleoside-specific channel-forming protein, Tsx GCE56_03800 PF00271 Helicase conserved C-terminal domain GCE56_03800 PF00270 DEAD/DEAH box helicase GCE56_03800 PF03880 DbpA RNA binding domain GCE56_03805 PF07690 Major Facilitator Superfamily GCE56_03810 PF08139 Prokaryotic membrane lipoprotein lipid attachment site GCE56_03810 PF03923 Uncharacterized lipoprotein GCE56_03815 PF01722 BolA-like protein GCE56_03820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GCE56_03820 PF05698 Bacterial trigger factor protein (TF) C-terminus GCE56_03820 PF05697 Bacterial trigger factor protein (TF) GCE56_03825 PF00574 Clp protease GCE56_03830 PF07724 AAA domain (Cdc48 subfamily) GCE56_03830 PF06689 ClpX C4-type zinc finger GCE56_03830 PF10431 C-terminal, D2-small domain, of ClpB protein GCE56_03835 PF02190 ATP-dependent protease La (LON) substrate-binding domain GCE56_03835 PF05362 Lon protease (S16) C-terminal proteolytic domain GCE56_03835 PF00004 ATPase family associated with various cellular activities (AAA) GCE56_03840 PF00216 Bacterial DNA-binding protein GCE56_03845 PF13145 PPIC-type PPIASE domain GCE56_03850 PF10531 SLBB domain GCE56_03860 PF06508 Queuosine biosynthesis protein QueC GCE56_03865 PF01037 Lrp/AsnC ligand binding domain GCE56_03865 PF13404 AsnC-type helix-turn-helix domain GCE56_03870 PF00664 ABC transporter transmembrane region GCE56_03870 PF00005 ABC transporter GCE56_03875 PF00664 ABC transporter transmembrane region GCE56_03875 PF00005 ABC transporter GCE56_03880 PF00543 Nitrogen regulatory protein P-II GCE56_03885 PF00909 Ammonium Transporter Family GCE56_03900 PF05321 Haemolysin expression modulating protein GCE56_03910 PF00873 AcrB/AcrD/AcrF family GCE56_03915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCE56_03915 PF00529 HlyD membrane-fusion protein of T1SS GCE56_03920 PF08361 MAATS-type transcriptional repressor, C-terminal region GCE56_03920 PF00440 Bacterial regulatory proteins, tetR family GCE56_03925 PF02635 DsrE/DsrF-like family GCE56_03930 PF00924 Mechanosensitive ion channel GCE56_03930 PF12795 Mechanosensitive ion channel porin domain GCE56_03930 PF12794 Mechanosensitive ion channel inner membrane domain 1 GCE56_03945 PF00156 Phosphoribosyl transferase domain GCE56_03950 PF12169 DNA polymerase III subunits gamma and tau domain III GCE56_03950 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding GCE56_03950 PF12170 DNA polymerase III tau subunit V interacting with alpha GCE56_03955 PF02575 YbaB/EbfC DNA-binding family GCE56_03960 PF13662 Toprim domain GCE56_03960 PF02132 RecR protein GCE56_03965 PF13722 5TM C-terminal transporter carbon starvation CstA GCE56_03965 PF02554 Carbon starvation protein CstA GCE56_03970 PF04328 Selenoprotein, putative GCE56_03975 PF07683 Cobalamin synthesis protein cobW C-terminal domain GCE56_03975 PF02492 CobW/HypB/UreG, nucleotide-binding domain GCE56_03980 PF03313 Serine dehydratase alpha chain GCE56_03985 PF03606 C4-dicarboxylate anaerobic carrier GCE56_03990 PF01546 Peptidase family M20/M25/M40 GCE56_03990 PF07687 Peptidase dimerisation domain GCE56_04000 PF01554 MatE GCE56_04005 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain GCE56_04005 PF01118 Semialdehyde dehydrogenase, NAD binding domain GCE56_04010 PF09370 Phosphoenolpyruvate hydrolase-like GCE56_04045 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) GCE56_04050 PF00394 Multicopper oxidase GCE56_04050 PF07731 Multicopper oxidase GCE56_04050 PF07732 Multicopper oxidase GCE56_04050 PF10518 TAT (twin-arginine translocation) pathway signal sequence GCE56_04055 PF00156 Phosphoribosyl transferase domain GCE56_04060 PF00484 Carbonic anhydrase GCE56_04065 PF00005 ABC transporter GCE56_04075 PF07690 Major Facilitator Superfamily GCE56_04080 PF10735 Protein of unknown function (DUF2526) GCE56_04095 PF12323 Helix-turn-helix domain GCE56_04095 PF07282 Putative transposase DNA-binding domain GCE56_04095 PF01385 Probable transposase GCE56_04105 PF04261 Dyp-type peroxidase family GCE56_04120 PF13473 Cupredoxin-like domain GCE56_04125 PF10634 Fe2+ transport protein GCE56_04130 PF01527 Transposase GCE56_04155 PF03738 Glutathionylspermidine synthase preATP-grasp GCE56_04155 PF05257 CHAP domain GCE56_04160 PF03466 LysR substrate binding domain GCE56_04160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_04165 PF02447 GntP family permease GCE56_04170 PF00291 Pyridoxal-phosphate dependent enzyme GCE56_04175 PF08402 TOBE domain GCE56_04175 PF00005 ABC transporter GCE56_04180 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_04190 PF07690 Major Facilitator Superfamily GCE56_04195 PF05231 MASE1 GCE56_04195 PF07730 Histidine kinase GCE56_04195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_04200 PF00196 Bacterial regulatory proteins, luxR family GCE56_04200 PF00072 Response regulator receiver domain GCE56_04205 PF02261 Aspartate decarboxylase GCE56_04210 PF02569 Pantoate-beta-alanine ligase GCE56_04215 PF02548 Ketopantoate hydroxymethyltransferase GCE56_04220 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) GCE56_04225 PF12627 Probable RNA and SrmB- binding site of polymerase A GCE56_04225 PF01743 Poly A polymerase head domain GCE56_04225 PF12626 Polymerase A arginine-rich C-terminus GCE56_04235 PF01258 Prokaryotic dksA/traR C4-type zinc finger GCE56_04240 PF17746 SfsA N-terminal OB domain GCE56_04240 PF03749 Sugar fermentation stimulation protein RE domain GCE56_04245 PF00270 DEAD/DEAH box helicase GCE56_04245 PF08482 ATP-dependent helicase C-terminal GCE56_04245 PF00271 Helicase conserved C-terminal domain GCE56_04245 PF04408 Helicase associated domain (HA2) GCE56_04250 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal GCE56_04250 PF00912 Transglycosylase GCE56_04250 PF00905 Penicillin binding protein transpeptidase domain GCE56_04250 PF14814 Bifunctional transglycosylase second domain GCE56_04255 PF00202 Aminotransferase class-III GCE56_04260 PF01521 Iron-sulphur cluster biosynthesis GCE56_04265 PF01497 Periplasmic binding protein GCE56_04270 PF01048 Phosphorylase superfamily GCE56_04275 PF01966 HD domain GCE56_04275 PF13286 Phosphohydrolase-associated domain GCE56_04280 PF01938 TRAM domain GCE56_04280 PF05958 tRNA (Uracil-5-)-methyltransferase GCE56_04285 PF04607 Region found in RelA / SpoT proteins GCE56_04285 PF02824 TGS domain GCE56_04285 PF13291 ACT domain GCE56_04290 PF03819 MazG nucleotide pyrophosphohydrolase domain GCE56_04300 PF06418 CTP synthase N-terminus GCE56_04300 PF00117 Glutamine amidotransferase class-I GCE56_04305 PF00113 Enolase, C-terminal TIM barrel domain GCE56_04305 PF03952 Enolase, N-terminal domain GCE56_04310 PF00939 Sodium:sulfate symporter transmembrane region GCE56_04315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GCE56_04315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GCE56_04315 PF00205 Thiamine pyrophosphate enzyme, central domain GCE56_04320 PF01464 Transglycosylase SLT domain GCE56_04320 PF01476 LysM domain GCE56_04325 PF16123 Hydroxyacylglutathione hydrolase C-terminus GCE56_04325 PF00753 Metallo-beta-lactamase superfamily GCE56_04330 PF08241 Methyltransferase domain GCE56_04335 PF00075 RNase H GCE56_04340 PF00929 Exonuclease GCE56_04350 PF01032 FecCD transport family GCE56_04355 PF00005 ABC transporter GCE56_04365 PF04183 IucA / IucC family GCE56_04365 PF06276 Ferric iron reductase FhuF-like transporter GCE56_04370 PF00593 TonB dependent receptor GCE56_04370 PF07715 TonB-dependent Receptor Plug Domain GCE56_04375 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GCE56_04380 PF00291 Pyridoxal-phosphate dependent enzyme GCE56_04385 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain GCE56_04390 PF07690 Major Facilitator Superfamily GCE56_04405 PF02779 Transketolase, pyrimidine binding domain GCE56_04405 PF02780 Transketolase, C-terminal domain GCE56_04405 PF00456 Transketolase, thiamine diphosphate binding domain GCE56_04410 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GCE56_04410 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GCE56_04415 PF00162 Phosphoglycerate kinase GCE56_04420 PF01116 Fructose-bisphosphate aldolase class-II GCE56_04425 PF05154 TM2 domain GCE56_04430 PF00854 POT family GCE56_04435 PF01613 Flavin reductase like domain GCE56_04445 PF01047 MarR family GCE56_04450 PF02028 BCCT, betaine/carnitine/choline family transporter GCE56_04465 PF12706 Beta-lactamase superfamily domain GCE56_04465 PF00753 Metallo-beta-lactamase superfamily GCE56_04470 PF00419 Fimbrial protein GCE56_04475 PF13953 PapC C-terminal domain GCE56_04475 PF00577 Outer membrane usher protein GCE56_04475 PF13954 PapC N-terminal domain GCE56_04480 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_04480 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_04485 PF00419 Fimbrial protein GCE56_04490 PF00419 Fimbrial protein GCE56_04510 PF00589 Phage integrase family GCE56_04515 PF00419 Fimbrial protein GCE56_04525 PF13954 PapC N-terminal domain GCE56_04525 PF13953 PapC C-terminal domain GCE56_04525 PF00577 Outer membrane usher protein GCE56_04530 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_04530 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_04535 PF00419 Fimbrial protein GCE56_04545 PF00419 Fimbrial protein GCE56_04560 PF03806 AbgT putative transporter family GCE56_04565 PF09350 Domain of unknown function (DUF1992) GCE56_04570 PF02627 Carboxymuconolactone decarboxylase family GCE56_04575 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase GCE56_04580 PF02321 Outer membrane efflux protein GCE56_04585 PF00529 HlyD membrane-fusion protein of T1SS GCE56_04590 PF00005 ABC transporter GCE56_04590 PF00664 ABC transporter transmembrane region GCE56_04595 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) GCE56_04595 PF08548 Peptidase M10 serralysin C terminal GCE56_04595 PF00413 Matrixin GCE56_04600 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) GCE56_04600 PF00413 Matrixin GCE56_04600 PF08548 Peptidase M10 serralysin C terminal GCE56_04605 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) GCE56_04605 PF00413 Matrixin GCE56_04605 PF08548 Peptidase M10 serralysin C terminal GCE56_04610 PF00413 Matrixin GCE56_04610 PF08548 Peptidase M10 serralysin C terminal GCE56_04610 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) GCE56_04620 PF07687 Peptidase dimerisation domain GCE56_04620 PF01546 Peptidase family M20/M25/M40 GCE56_04630 PF13419 Haloacid dehalogenase-like hydrolase GCE56_04635 PF03632 Glycosyl hydrolase family 65 central catalytic domain GCE56_04635 PF03633 Glycosyl hydrolase family 65, C-terminal domain GCE56_04635 PF03636 Glycosyl hydrolase family 65, N-terminal domain GCE56_04640 PF00367 phosphotransferase system, EIIB GCE56_04640 PF02378 Phosphotransferase system, EIIC GCE56_04645 PF00356 Bacterial regulatory proteins, lacI family GCE56_04655 PF12833 Helix-turn-helix domain GCE56_04660 PF12833 Helix-turn-helix domain GCE56_04680 PF00664 ABC transporter transmembrane region GCE56_04680 PF03412 Peptidase C39 family GCE56_04680 PF00005 ABC transporter GCE56_04690 PF00440 Bacterial regulatory proteins, tetR family GCE56_04690 PF16925 Tetracyclin repressor-like, C-terminal domain GCE56_04695 PF13520 Amino acid permease GCE56_04700 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain GCE56_04700 PF01276 Orn/Lys/Arg decarboxylase, major domain GCE56_04700 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain GCE56_04765 PF13276 HTH-like domain GCE56_04765 PF13333 Integrase core domain GCE56_04765 PF00665 Integrase core domain GCE56_04775 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain GCE56_04775 PF01464 Transglycosylase SLT domain GCE56_04780 PF04362 Bacterial Fe(2+) trafficking GCE56_04785 PF00633 Helix-hairpin-helix motif GCE56_04785 PF10576 Iron-sulfur binding domain of endonuclease III GCE56_04785 PF00730 HhH-GPD superfamily base excision DNA repair protein GCE56_04785 PF14815 NUDIX domain GCE56_04790 PF02390 Putative methyltransferase GCE56_04795 PF04320 Protein with unknown function (DUF469) GCE56_04800 PF04960 Glutaminase GCE56_04805 PF11101 Protein of unknown function (DUF2884) GCE56_04810 PF01497 Periplasmic binding protein GCE56_04815 PF06969 HemN C-terminal domain GCE56_04815 PF04055 Radical SAM superfamily GCE56_04820 PF01725 Ham1 family GCE56_04825 PF02325 YGGT family GCE56_04830 PF14748 Pyrroline-5-carboxylate reductase dimerisation GCE56_04830 PF03807 NADP oxidoreductase coenzyme F420-dependent GCE56_04835 PF01168 Alanine racemase, N-terminal domain GCE56_04840 PF00437 Type II/IV secretion system protein GCE56_04845 PF03652 Holliday junction resolvase GCE56_04850 PF02622 Uncharacterized ACR, COG1678 GCE56_04855 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain GCE56_04855 PF02951 Prokaryotic glutathione synthetase, N-terminal domain GCE56_04860 PF04452 RNA methyltransferase GCE56_04880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_04880 PF03466 LysR substrate binding domain GCE56_04885 PF03466 LysR substrate binding domain GCE56_04885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_04890 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GCE56_04890 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain GCE56_04895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GCE56_04895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GCE56_04895 PF09317 Domain of unknown function (DUF1974) GCE56_04900 PF13580 SIS domain GCE56_04905 PF13230 Glutamine amidotransferases class-II GCE56_04910 PF03734 L,D-transpeptidase catalytic domain GCE56_04915 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GCE56_04915 PF11973 NQRA C-terminal domain GCE56_04920 PF03116 NQR2, RnfD, RnfE family GCE56_04925 PF04205 FMN-binding domain GCE56_04930 PF02508 Rnf-Nqr subunit, membrane protein GCE56_04935 PF02508 Rnf-Nqr subunit, membrane protein GCE56_04940 PF00175 Oxidoreductase NAD-binding domain GCE56_04940 PF00111 2Fe-2S iron-sulfur cluster binding domain GCE56_04940 PF00970 Oxidoreductase FAD-binding domain GCE56_04945 PF02424 ApbE family GCE56_04950 PF04400 (Na+)-NQR maturation NqrM GCE56_04955 PF05532 CsbD-like GCE56_04960 PF03009 Glycerophosphoryl diester phosphodiesterase family GCE56_04965 PF11799 impB/mucB/samB family C-terminal domain GCE56_04965 PF11798 IMS family HHH motif GCE56_04965 PF00817 impB/mucB/samB family GCE56_04970 PF00593 TonB dependent receptor GCE56_04970 PF07715 TonB-dependent Receptor Plug Domain GCE56_04975 PF07687 Peptidase dimerisation domain GCE56_04975 PF01546 Peptidase family M20/M25/M40 GCE56_04980 PF00156 Phosphoribosyl transferase domain GCE56_04990 PF07417 Sigma factor-binding transcriptional regulator Crl GCE56_04995 PF00696 Amino acid kinase family GCE56_04995 PF01472 PUA domain GCE56_05000 PF00171 Aldehyde dehydrogenase family GCE56_05005 PF01202 Shikimate kinase GCE56_05010 PF13193 AMP-binding enzyme C-terminal domain GCE56_05010 PF00501 AMP-binding enzyme GCE56_05010 PF01553 Acyltransferase GCE56_05015 PF07690 Major Facilitator Superfamily GCE56_05020 PF02464 Competence-damaged protein GCE56_05025 PF00154 recA bacterial DNA recombination protein GCE56_05030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GCE56_05030 PF01411 tRNA synthetases class II (A) GCE56_05030 PF02272 DHHA1 domain GCE56_05035 PF02599 Global regulator protein family GCE56_05065 PF04262 Glutamate-cysteine ligase GCE56_05070 PF02664 S-Ribosylhomocysteinase (LuxS) GCE56_05075 PF03471 Transporter associated domain GCE56_05075 PF01595 Cyclin M transmembrane N-terminal domain GCE56_05075 PF00571 CBS domain GCE56_05080 PF01578 Cytochrome C assembly protein GCE56_05085 PF02881 SRP54-type protein, helical bundle domain GCE56_05085 PF02978 Signal peptide binding domain GCE56_05085 PF00448 SRP54-type protein, GTPase domain GCE56_05090 PF00886 Ribosomal protein S16 GCE56_05095 PF05239 PRC-barrel domain GCE56_05095 PF01782 RimM N-terminal domain GCE56_05100 PF01746 tRNA (Guanine-1)-methyltransferase GCE56_05105 PF01245 Ribosomal protein L19 GCE56_05110 PF00793 DAHP synthetase I family GCE56_05115 PF02153 Prephenate dehydrogenase GCE56_05115 PF01817 Chorismate mutase type II GCE56_05120 PF03605 Anaerobic c4-dicarboxylate membrane transporter GCE56_05125 PF00800 Prephenate dehydratase GCE56_05125 PF01817 Chorismate mutase type II GCE56_05130 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein GCE56_05135 PF13525 Outer membrane lipoprotein GCE56_05140 PF01479 S4 domain GCE56_05140 PF00849 RNA pseudouridylate synthase GCE56_05150 PF00004 ATPase family associated with various cellular activities (AAA) GCE56_05150 PF07724 AAA domain (Cdc48 subfamily) GCE56_05150 PF17871 AAA lid domain GCE56_05150 PF10431 C-terminal, D2-small domain, of ClpB protein GCE56_05150 PF02861 Clp amino terminal domain, pathogenicity island component GCE56_05180 PF10043 Predicted periplasmic lipoprotein (DUF2279) GCE56_05185 PF13091 PLD-like domain GCE56_05190 PF13607 Succinyl-CoA ligase like flavodoxin domain GCE56_05190 PF13380 CoA binding domain GCE56_05190 PF00583 Acetyltransferase (GNAT) family GCE56_05205 PF00588 SpoU rRNA Methylase family GCE56_05205 PF08032 RNA 2'-O ribose methyltransferase substrate binding GCE56_05210 PF07690 Major Facilitator Superfamily GCE56_05215 PF00529 HlyD membrane-fusion protein of T1SS GCE56_05215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCE56_05220 PF00392 Bacterial regulatory proteins, gntR family GCE56_05220 PF07729 FCD domain GCE56_05225 PF07690 Major Facilitator Superfamily GCE56_05230 PF00857 Isochorismatase family GCE56_05235 PF01047 MarR family GCE56_05240 PF07690 Major Facilitator Superfamily GCE56_05245 PF00593 TonB dependent receptor GCE56_05245 PF07715 TonB-dependent Receptor Plug Domain GCE56_05250 PF04069 Substrate binding domain of ABC-type glycine betaine transport system GCE56_05255 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_05260 PF00005 ABC transporter GCE56_05260 PF00571 CBS domain GCE56_05265 PF00268 Ribonucleotide reductase, small chain GCE56_05270 PF02867 Ribonucleotide reductase, barrel domain GCE56_05270 PF00317 Ribonucleotide reductase, all-alpha domain GCE56_05270 PF08343 Ribonucleotide reductase N-terminal GCE56_05275 PF07972 NrdI Flavodoxin like GCE56_05285 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GCE56_05285 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GCE56_05290 PF00313 'Cold-shock' DNA-binding domain GCE56_05295 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GCE56_05300 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family GCE56_05300 PF04055 Radical SAM superfamily GCE56_05310 PF04359 Protein of unknown function (DUF493) GCE56_05315 PF00768 D-alanyl-D-alanine carboxypeptidase GCE56_05315 PF07943 Penicillin-binding protein 5, C-terminal domain GCE56_05320 PF03330 Lytic transglycolase GCE56_05320 PF05036 Sporulation related domain GCE56_05325 PF01098 Cell cycle protein GCE56_05330 PF03717 Penicillin-binding Protein dimerisation domain GCE56_05330 PF00905 Penicillin binding protein transpeptidase domain GCE56_05335 PF02590 Predicted SPOUT methyltransferase GCE56_05350 PF01467 Cytidylyltransferase-like GCE56_05355 PF06144 DNA polymerase III, delta subunit GCE56_05355 PF14840 Processivity clamp loader gamma complex DNA pol III C-term GCE56_05360 PF04390 Lipopolysaccharide-assembly GCE56_05365 PF00133 tRNA synthetases class I (I, L, M and V) GCE56_05365 PF13603 Leucyl-tRNA synthetase, Domain 2 GCE56_05365 PF08264 Anticodon-binding domain of tRNA GCE56_05370 PF00005 ABC transporter GCE56_05375 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_05380 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_05385 PF00497 Bacterial extracellular solute-binding proteins, family 3 GCE56_05405 PF00578 AhpC/TSA family GCE56_05415 PF00795 Carbon-nitrogen hydrolase GCE56_05420 PF03471 Transporter associated domain GCE56_05420 PF00571 CBS domain GCE56_05425 PF02130 Uncharacterized protein family UPF0054 GCE56_05430 PF02562 PhoH-like protein GCE56_05435 PF00919 Uncharacterized protein family UPF0004 GCE56_05435 PF01938 TRAM domain GCE56_05435 PF04055 Radical SAM superfamily GCE56_05440 PF01494 FAD binding domain GCE56_05445 PF00756 Putative esterase GCE56_05450 PF00107 Zinc-binding dehydrogenase GCE56_05450 PF08240 Alcohol dehydrogenase GroES-like domain GCE56_05455 PF02583 Metal-sensitive transcriptional repressor GCE56_05495 PF01047 MarR family GCE56_05495 PF00480 ROK family GCE56_05500 PF01979 Amidohydrolase family GCE56_05505 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase GCE56_05510 PF02378 Phosphotransferase system, EIIC GCE56_05510 PF00367 phosphotransferase system, EIIB GCE56_05510 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GCE56_05515 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain GCE56_05515 PF00589 Phage integrase family GCE56_05555 PF03837 RecT family GCE56_05560 PF06630 Enterobacterial exodeoxyribonuclease VIII GCE56_05560 PF12684 PDDEXK-like domain of unknown function (DUF3799) GCE56_05620 PF00772 DnaB-like helicase N terminal domain GCE56_05620 PF03796 DnaB-like helicase C terminal domain GCE56_05630 PF07102 Protein of unknown function (DUF1364) GCE56_05645 PF07274 Protein of unknown function (DUF1440) GCE56_05660 PF00959 Phage lysozyme GCE56_05710 PF02369 Bacterial Ig-like domain (group 1) GCE56_05710 PF07979 Intimin C-type lectin domain GCE56_05710 PF11924 Inverse autotransporter, beta-domain GCE56_05710 PF02368 Bacterial Ig-like domain (group 2) GCE56_05710 PF01476 LysM domain GCE56_05870 PF00577 Outer membrane usher protein GCE56_05870 PF13953 PapC C-terminal domain GCE56_05870 PF13954 PapC N-terminal domain GCE56_05875 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_05875 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_05880 PF16970 Type-1 fimbrial protein, A GCE56_05885 PF06440 DNA polymerase III, theta subunit GCE56_05890 PF00749 tRNA synthetases class I (E and Q), catalytic domain GCE56_05890 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain GCE56_05895 PF03573 outer membrane porin, OprD family GCE56_05905 PF01475 Ferric uptake regulator family GCE56_05910 PF00258 Flavodoxin GCE56_05915 PF01402 Ribbon-helix-helix protein, copG family GCE56_05920 PF12697 Alpha/beta hydrolase family GCE56_05925 PF17206 SeqA protein N-terminal domain GCE56_05925 PF03925 SeqA protein C-terminal domain GCE56_05930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GCE56_05930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GCE56_05930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GCE56_05930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GCE56_05935 PF07308 Protein of unknown function (DUF1456) GCE56_05940 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH GCE56_05955 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system GCE56_05965 PF10725 Protein of unknown function (DUF2517) GCE56_05970 PF01784 NIF3 (NGG1p interacting factor 3) GCE56_05980 PF05762 VWA domain containing CoxE-like protein GCE56_05990 PF07728 AAA domain (dynein-related subfamily) GCE56_06000 PF07690 Major Facilitator Superfamily GCE56_06010 PF00285 Citrate synthase, C-terminal domain GCE56_06015 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GCE56_06020 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GCE56_06025 PF02910 Fumarate reductase flavoprotein C-term GCE56_06025 PF00890 FAD binding domain GCE56_06030 PF13085 2Fe-2S iron-sulfur cluster binding domain GCE56_06035 PF16078 2-oxoglutarate dehydrogenase N-terminus GCE56_06035 PF02779 Transketolase, pyrimidine binding domain GCE56_06035 PF16870 2-oxoglutarate dehydrogenase C-terminal GCE56_06035 PF00676 Dehydrogenase E1 component GCE56_06040 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GCE56_06040 PF00364 Biotin-requiring enzyme GCE56_06040 PF02817 e3 binding domain GCE56_06045 PF00549 CoA-ligase GCE56_06045 PF08442 ATP-grasp domain GCE56_06050 PF02629 CoA binding domain GCE56_06050 PF00549 CoA-ligase GCE56_06055 PF01654 Cytochrome bd terminal oxidase subunit I GCE56_06060 PF02322 Cytochrome bd terminal oxidase subunit II GCE56_06065 PF08173 Membrane bound YbgT-like protein GCE56_06070 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) GCE56_06075 PF03466 LysR substrate binding domain GCE56_06075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_06080 PF07690 Major Facilitator Superfamily GCE56_06090 PF03061 Thioesterase superfamily GCE56_06095 PF01618 MotA/TolQ/ExbB proton channel family GCE56_06100 PF02472 Biopolymer transport protein ExbD/TolR GCE56_06105 PF06519 TolA C-terminal GCE56_06110 PF04052 TolB amino-terminal domain GCE56_06110 PF07676 WD40-like Beta Propeller Repeat GCE56_06115 PF00691 OmpA family GCE56_06120 PF16331 TolA binding protein trimerisation GCE56_06120 PF13174 Tetratricopeptide repeat GCE56_06140 PF04973 Nicotinamide mononucleotide transporter GCE56_06145 PF00793 DAHP synthetase I family GCE56_06150 PF00300 Histidine phosphatase superfamily (branch 1) GCE56_06155 PF00005 ABC transporter GCE56_06160 PF08479 POTRA domain, ShlB-type GCE56_06160 PF17287 POTRA domain GCE56_06160 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB GCE56_06165 PF04829 Pre-toxin domain with VENN motif GCE56_06165 PF14436 Bacterial EndoU nuclease GCE56_06165 PF05594 Haemagluttinin repeat GCE56_06165 PF13332 Hemagglutinin repeat GCE56_06165 PF05860 haemagglutination activity domain GCE56_06190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_06190 PF03459 TOBE domain GCE56_06195 PF10766 Multidrug efflux pump-associated protein AcrZ GCE56_06205 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_06210 PF00005 ABC transporter GCE56_06210 PF03459 TOBE domain GCE56_06220 PF10282 Lactonase, 7-bladed beta-propeller GCE56_06225 PF00202 Aminotransferase class-III GCE56_06230 PF04055 Radical SAM superfamily GCE56_06230 PF06968 Biotin and Thiamin Synthesis associated domain GCE56_06235 PF00155 Aminotransferase class I and II GCE56_06240 PF08241 Methyltransferase domain GCE56_06250 PF17757 UvrB interaction domain GCE56_06250 PF12344 Ultra-violet resistance protein B GCE56_06250 PF02151 UvrB/uvrC motif GCE56_06250 PF04851 Type III restriction enzyme, res subunit GCE56_06250 PF00271 Helicase conserved C-terminal domain GCE56_06260 PF01933 Uncharacterised protein family UPF0052 GCE56_06265 PF06463 Molybdenum Cofactor Synthesis C GCE56_06265 PF04055 Radical SAM superfamily GCE56_06270 PF01967 MoaC family GCE56_06275 PF02597 ThiS family GCE56_06280 PF02391 MoaE protein GCE56_06285 PF01027 Inhibitor of apoptosis-promoting Bax1 GCE56_06300 PF00005 ABC transporter GCE56_06305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCE56_06310 PF09209 Tetracyclin repressor-like, C-terminal domain GCE56_06310 PF00440 Bacterial regulatory proteins, tetR family GCE56_06315 PF00271 Helicase conserved C-terminal domain GCE56_06315 PF00270 DEAD/DEAH box helicase GCE56_06320 PF01207 Dihydrouridine synthase (Dus) GCE56_06325 PF04226 Transglycosylase associated protein GCE56_06330 PF00581 Rhodanese-like domain GCE56_06340 PF03606 C4-dicarboxylate anaerobic carrier GCE56_06345 PF01053 Cys/Met metabolism PLP-dependent enzyme GCE56_06350 PF10397 Adenylosuccinate lyase C-terminus GCE56_06350 PF00206 Lyase GCE56_06355 PF03972 MmgE/PrpD family GCE56_06360 PF03466 LysR substrate binding domain GCE56_06360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_06365 PF06733 DEAD_2 GCE56_06365 PF13307 Helicase C-terminal domain GCE56_06370 PF00210 Ferritin-like domain GCE56_06375 PF00892 EamA-like transporter family GCE56_06380 PF03641 Possible lysine decarboxylase GCE56_06390 PF07969 Amidohydrolase family GCE56_06395 PF00899 ThiF family GCE56_06400 PF00994 Probable molybdopterin binding domain GCE56_06400 PF03454 MoeA C-terminal region (domain IV) GCE56_06400 PF03453 MoeA N-terminal region (domain I and II) GCE56_06405 PF06779 Uncharacterised MFS-type transporter YbfB GCE56_06410 PF01227 GTP cyclohydrolase I GCE56_06415 PF04235 Protein of unknown function (DUF418) GCE56_06420 PF02698 DUF218 domain GCE56_06425 PF00390 Malic enzyme, N-terminal domain GCE56_06425 PF03949 Malic enzyme, NAD binding domain GCE56_06430 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region GCE56_06430 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GCE56_06435 PF04172 LrgB-like family GCE56_06440 PF03788 LrgA family GCE56_06445 PF09334 tRNA synthetases class I (M) GCE56_06445 PF01588 Putative tRNA binding domain GCE56_06450 PF10609 NUBPL iron-transfer P-loop NTPase GCE56_06455 PF00485 Phosphoribulokinase / Uridine kinase family GCE56_06460 PF00692 dUTPase GCE56_06465 PF05170 AsmA family GCE56_06470 PF03606 C4-dicarboxylate anaerobic carrier GCE56_06475 PF00571 CBS domain GCE56_06475 PF03471 Transporter associated domain GCE56_06475 PF03741 Integral membrane protein TerC family GCE56_06480 PF01797 Transposase IS200 like GCE56_06485 PF01385 Probable transposase GCE56_06485 PF12323 Helix-turn-helix domain GCE56_06485 PF07282 Putative transposase DNA-binding domain GCE56_06490 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain GCE56_06490 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GCE56_06570 PF00717 Peptidase S24-like GCE56_06570 PF01381 Helix-turn-helix GCE56_06620 PF06530 Phage antitermination protein Q GCE56_06685 PF03354 Phage Terminase GCE56_06785 PF04073 Aminoacyl-tRNA editing domain GCE56_06790 PF00465 Iron-containing alcohol dehydrogenase GCE56_06795 PF01502 Phosphoribosyl-AMP cyclohydrolase GCE56_06795 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase GCE56_06800 PF00977 Histidine biosynthesis protein GCE56_06805 PF00977 Histidine biosynthesis protein GCE56_06810 PF00117 Glutamine amidotransferase class-I GCE56_06815 PF00475 Imidazoleglycerol-phosphate dehydratase GCE56_06820 PF00155 Aminotransferase class I and II GCE56_06825 PF00815 Histidinol dehydrogenase GCE56_06830 PF08029 HisG, C-terminal domain GCE56_06830 PF01634 ATP phosphoribosyltransferase GCE56_06840 PF01370 NAD dependent epimerase/dehydratase family GCE56_06845 PF13417 Glutathione S-transferase, N-terminal domain GCE56_06845 PF00043 Glutathione S-transferase, C-terminal domain GCE56_06850 PF07943 Penicillin-binding protein 5, C-terminal domain GCE56_06850 PF00768 D-alanyl-D-alanine carboxypeptidase GCE56_06855 PF01268 Formate--tetrahydrofolate ligase GCE56_06860 PF03313 Serine dehydratase alpha chain GCE56_06860 PF03315 Serine dehydratase beta chain GCE56_06870 PF01569 PAP2 superfamily GCE56_06875 PF01894 Uncharacterised protein family UPF0047 GCE56_06880 PF00462 Glutaredoxin GCE56_06885 PF07214 Protein of unknown function (DUF1418) GCE56_06890 PF10722 Putative bacterial sensory transduction regulator GCE56_06895 PF05958 tRNA (Uracil-5-)-methyltransferase GCE56_06900 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_06905 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_06910 PF00497 Bacterial extracellular solute-binding proteins, family 3 GCE56_06915 PF00005 ABC transporter GCE56_06920 PF13460 NAD(P)H-binding GCE56_06920 PF11066 Protein of unknown function (DUF2867) GCE56_06925 PF03956 Lysine exporter LysO GCE56_06930 PF11398 Protein of unknown function (DUF2813) GCE56_06935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCE56_06940 PF02687 FtsX-like permease family GCE56_06940 PF12704 MacB-like periplasmic core domain GCE56_06940 PF00005 ABC transporter GCE56_06945 PF00313 'Cold-shock' DNA-binding domain GCE56_06950 PF02617 ATP-dependent Clp protease adaptor protein ClpS GCE56_06955 PF10431 C-terminal, D2-small domain, of ClpB protein GCE56_06955 PF17871 AAA lid domain GCE56_06955 PF07724 AAA domain (Cdc48 subfamily) GCE56_06955 PF02861 Clp amino terminal domain, pathogenicity island component GCE56_06955 PF00004 ATPase family associated with various cellular activities (AAA) GCE56_06960 PF01176 Translation initiation factor 1A / IF-1 GCE56_06965 PF03588 Leucyl/phenylalanyl-tRNA protein transferase GCE56_06970 PF00664 ABC transporter transmembrane region GCE56_06970 PF00005 ABC transporter GCE56_06975 PF00664 ABC transporter transmembrane region GCE56_06975 PF00005 ABC transporter GCE56_06980 PF07992 Pyridine nucleotide-disulphide oxidoreductase GCE56_06985 PF01037 Lrp/AsnC ligand binding domain GCE56_06990 PF17854 FtsK alpha domain GCE56_06990 PF09397 Ftsk gamma domain GCE56_06990 PF13491 4TM region of DNA translocase FtsK/SpoIIIE GCE56_06990 PF01580 FtsK/SpoIIIE family GCE56_06995 PF03548 Outer membrane lipoprotein carrier protein LolA GCE56_07000 PF12002 MgsA AAA+ ATPase C terminal GCE56_07000 PF16193 AAA C-terminal domain GCE56_07000 PF00004 ATPase family associated with various cellular activities (AAA) GCE56_07005 PF02403 Seryl-tRNA synthetase N-terminal domain GCE56_07005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GCE56_07015 PF02615 Malate/L-lactate dehydrogenase GCE56_07025 PF04055 Radical SAM superfamily GCE56_07030 PF02901 Pyruvate formate lyase-like GCE56_07030 PF01228 Glycine radical GCE56_07035 PF01226 Formate/nitrite transporter GCE56_07040 PF18381 YcaO cyclodehydratase C-terminal domain GCE56_07040 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding GCE56_07045 PF00710 Asparaginase, N-terminal GCE56_07045 PF17763 Glutaminase/Asparaginase C-terminal domain GCE56_07055 PF07690 Major Facilitator Superfamily GCE56_07060 PF00266 Aminotransferase class-V GCE56_07065 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GCE56_07070 PF02224 Cytidylate kinase GCE56_07075 PF00575 S1 RNA binding domain GCE56_07080 PF00216 Bacterial DNA-binding protein GCE56_07090 PF00753 Metallo-beta-lactamase superfamily GCE56_07090 PF03772 Competence protein GCE56_07095 PF00664 ABC transporter transmembrane region GCE56_07095 PF00005 ABC transporter GCE56_07100 PF02606 Tetraacyldisaccharide-1-P 4'-kinase GCE56_07105 PF00313 'Cold-shock' DNA-binding domain GCE56_07110 PF03966 Trm112p-like protein GCE56_07115 PF02348 Cytidylyltransferase GCE56_07120 PF02698 DUF218 domain GCE56_07125 PF13847 Methyltransferase domain GCE56_07130 PF17192 MukF middle domain GCE56_07130 PF17193 MukF C-terminal domain GCE56_07130 PF03882 MukF winged-helix domain GCE56_07135 PF04288 MukE-like family GCE56_07140 PF16330 MukB hinge domain GCE56_07140 PF04310 MukB N-terminal GCE56_07145 PF00302 Chloramphenicol acetyltransferase GCE56_07150 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) GCE56_07155 PF03734 L,D-transpeptidase catalytic domain GCE56_07155 PF01471 Putative peptidoglycan binding domain GCE56_07160 PF05951 Bacterial protein of unknown function (DUF882) GCE56_07165 PF00753 Metallo-beta-lactamase superfamily GCE56_07170 PF05638 Type VI secretion system effector, Hcp GCE56_07205 PF17871 AAA lid domain GCE56_07205 PF07724 AAA domain (Cdc48 subfamily) GCE56_07205 PF00004 ATPase family associated with various cellular activities (AAA) GCE56_07205 PF10431 C-terminal, D2-small domain, of ClpB protein GCE56_07255 PF05638 Type VI secretion system effector, Hcp GCE56_07260 PF04717 Type VI secretion system, phage-baseplate injector GCE56_07325 PF03527 RHS protein GCE56_07325 PF05593 RHS Repeat GCE56_07385 PF00155 Aminotransferase class I and II GCE56_07390 PF00267 Gram-negative porin GCE56_07395 PF01336 OB-fold nucleic acid binding domain GCE56_07395 PF00152 tRNA synthetases class II (D, K and N) GCE56_07405 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family GCE56_07405 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain GCE56_07410 PF17432 Domain of unknown function (DUF3458_C) ARM repeats GCE56_07410 PF11940 Domain of unknown function (DUF3458) Ig-like fold GCE56_07410 PF01433 Peptidase family M1 domain GCE56_07420 PF01180 Dihydroorotate dehydrogenase GCE56_07425 PF07126 Cell-division protein ZapC GCE56_07430 PF00111 2Fe-2S iron-sulfur cluster binding domain GCE56_07430 PF03476 MOSC N-terminal beta barrel domain GCE56_07430 PF03473 MOSC domain GCE56_07435 PF02926 THUMP domain GCE56_07435 PF10672 S-adenosylmethionine-dependent methyltransferase GCE56_07435 PF01170 Putative RNA methylase family UPF0020 GCE56_07440 PF12848 ABC transporter GCE56_07440 PF00005 ABC transporter GCE56_07440 PF16326 ABC transporter C-terminal domain GCE56_07445 PF04403 Paraquat-inducible protein A GCE56_07450 PF02470 MlaD protein GCE56_07455 PF03886 ABC-type transport auxiliary lipoprotein component GCE56_07465 PF04957 Ribosome modulation factor GCE56_07470 PF07977 FabA-like domain GCE56_07475 PF05362 Lon protease (S16) C-terminal proteolytic domain GCE56_07475 PF13654 AAA domain GCE56_07480 PF17414 MatP C-terminal ribbon-helix-helix domain GCE56_07480 PF06303 MatP N-terminal domain GCE56_07485 PF00691 OmpA family GCE56_07485 PF01389 OmpA-like transmembrane domain GCE56_07490 PF03846 Cell division inhibitor SulA GCE56_07495 PF04994 TfoX C-terminal domain GCE56_07495 PF04993 TfoX N-terminal domain GCE56_07500 PF12805 FUSC-like inner membrane protein yccS GCE56_07505 PF12462 DNA helicase IV / RNA helicase N terminal GCE56_07505 PF00580 UvrD/REP helicase N-terminal domain GCE56_07505 PF13361 UvrD-like helicase C-terminal domain GCE56_07510 PF02142 MGS-like domain GCE56_07515 PF13380 CoA binding domain GCE56_07520 PF08755 Hemimethylated DNA-binding protein YccV like GCE56_07525 PF00708 Acylphosphatase GCE56_07530 PF04358 DsrC like protein GCE56_07540 PF00583 Acetyltransferase (GNAT) family GCE56_07550 PF09313 Domain of unknown function (DUF1971) GCE56_07555 PF00226 DnaJ domain GCE56_07555 PF01556 DnaJ C terminal domain GCE56_07565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_07565 PF03466 LysR substrate binding domain GCE56_07570 PF00248 Aldo/keto reductase family GCE56_07575 PF03577 Peptidase family C69 GCE56_07580 PF06445 GyrI-like small molecule binding domain GCE56_07580 PF12833 Helix-turn-helix domain GCE56_07595 PF00313 'Cold-shock' DNA-binding domain GCE56_07600 PF03279 Bacterial lipid A biosynthesis acyltransferase GCE56_07615 PF13847 Methyltransferase domain GCE56_07680 PF00884 Sulfatase GCE56_07680 PF11893 Domain of unknown function (DUF3413) GCE56_07685 PF07208 Protein of unknown function (DUF1414) GCE56_07690 PF04245 37-kD nucleoid-associated bacterial protein GCE56_07695 PF01386 Ribosomal L25p family GCE56_07700 PF04851 Type III restriction enzyme, res subunit GCE56_07700 PF00271 Helicase conserved C-terminal domain GCE56_07705 PF00849 RNA pseudouridylate synthase GCE56_07705 PF01479 S4 domain GCE56_07710 PF07690 Major Facilitator Superfamily GCE56_07720 PF00877 NlpC/P60 family GCE56_07725 PF01569 PAP2 superfamily GCE56_07740 PF09285 Elongation factor P, C-terminal GCE56_07740 PF01132 Elongation factor P (EF-P) OB domain GCE56_07740 PF08207 Elongation factor P (EF-P) KOW-like domain GCE56_07745 PF03222 Tryptophan/tyrosine permease family GCE56_07750 PF00293 NUDIX domain GCE56_07755 PF01261 Xylose isomerase-like TIM barrel GCE56_07760 PF03601 Conserved hypothetical protein 698 GCE56_07765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_07765 PF03466 LysR substrate binding domain GCE56_07770 PF00324 Amino acid permease GCE56_07780 PF07715 TonB-dependent Receptor Plug Domain GCE56_07780 PF00593 TonB dependent receptor GCE56_07790 PF13520 Amino acid permease GCE56_07795 PF03797 Autotransporter beta-domain GCE56_07795 PF00082 Subtilase family GCE56_07795 PF12951 Passenger-associated-transport-repeat GCE56_07800 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GCE56_07800 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GCE56_07800 PF00205 Thiamine pyrophosphate enzyme, central domain GCE56_07805 PF03466 LysR substrate binding domain GCE56_07805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_07810 PF01565 FAD binding domain GCE56_07810 PF09330 D-lactate dehydrogenase, membrane binding GCE56_07815 PF00929 Exonuclease GCE56_07815 PF08411 Exonuclease C-terminal GCE56_07820 PF01306 LacY proton/sugar symporter GCE56_07825 PF04363 Protein of unknown function (DUF496) GCE56_07830 PF00575 S1 RNA binding domain GCE56_07830 PF10150 Ribonuclease E/G family GCE56_07830 PF12111 Polyribonucleotide phosphorylase C terminal GCE56_07835 PF01479 S4 domain GCE56_07835 PF00849 RNA pseudouridylate synthase GCE56_07845 PF02545 Maf-like protein GCE56_07850 PF02620 Large ribosomal RNA subunit accumulation protein YceD GCE56_07855 PF01783 Ribosomal L32p protein family GCE56_07860 PF02504 Fatty acid synthesis protein GCE56_07865 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GCE56_07865 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GCE56_07870 PF00698 Acyl transferase domain GCE56_07880 PF00550 Phosphopantetheine attachment site GCE56_07885 PF00109 Beta-ketoacyl synthase, N-terminal domain GCE56_07885 PF02801 Beta-ketoacyl synthase, C-terminal domain GCE56_07890 PF01063 Amino-transferase class IV GCE56_07895 PF02618 YceG-like family GCE56_07900 PF02223 Thymidylate kinase GCE56_07905 PF09115 DNA polymerase III, delta subunit, C terminal GCE56_07910 PF01026 TatD related DNase GCE56_07915 PF01230 HIT domain GCE56_07920 PF07233 Protein of unknown function (DUF1425) GCE56_07925 PF13036 Peptidoglycan-synthase activator LpoB GCE56_07935 PF00933 Glycosyl hydrolase family 3 N terminal domain GCE56_07940 PF05728 Uncharacterised protein family (UPF0227) GCE56_07945 PF07992 Pyridine nucleotide-disulphide oxidoreductase GCE56_07950 PF05433 Glycine zipper 2TM domain GCE56_07955 PF00271 Helicase conserved C-terminal domain GCE56_07955 PF00270 DEAD/DEAH box helicase GCE56_07955 PF02559 CarD-like/TRCF domain GCE56_07955 PF03461 TRCF domain GCE56_07955 PF17757 UvrB interaction domain GCE56_07960 PF12704 MacB-like periplasmic core domain GCE56_07960 PF02687 FtsX-like permease family GCE56_07965 PF00005 ABC transporter GCE56_07970 PF12704 MacB-like periplasmic core domain GCE56_07970 PF02687 FtsX-like permease family GCE56_07975 PF02146 Sir2 family GCE56_07980 PF01546 Peptidase family M20/M25/M40 GCE56_07980 PF07687 Peptidase dimerisation domain GCE56_07990 PF08007 Cupin superfamily protein GCE56_07995 PF08918 PhoQ Sensor GCE56_07995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_08000 PF00486 Transcriptional regulatory protein, C terminal GCE56_08000 PF00072 Response regulator receiver domain GCE56_08005 PF00206 Lyase GCE56_08005 PF08328 Adenylosuccinate lyase C-terminal GCE56_08010 PF04356 Protein of unknown function (DUF489) GCE56_08020 PF00293 NUDIX domain GCE56_08025 PF00849 RNA pseudouridylate synthase GCE56_08030 PF00180 Isocitrate/isopropylmalate dehydrogenase GCE56_08035 PF00589 Phage integrase family GCE56_08035 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain GCE56_08040 PF07825 Excisionase-like protein GCE56_08050 PF10065 Uncharacterized conserved protein (DUF2303) GCE56_08070 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT GCE56_08100 PF06147 Protein of unknown function (DUF968) GCE56_08105 PF06530 Phage antitermination protein Q GCE56_08110 PF00313 'Cold-shock' DNA-binding domain GCE56_08115 PF07274 Protein of unknown function (DUF1440) GCE56_08120 PF02627 Carboxymuconolactone decarboxylase family GCE56_08125 PF02311 AraC-like ligand binding domain GCE56_08125 PF12833 Helix-turn-helix domain GCE56_08145 PF00959 Phage lysozyme GCE56_08170 PF03354 Phage Terminase GCE56_08305 PF00180 Isocitrate/isopropylmalate dehydrogenase GCE56_08330 PF00180 Isocitrate/isopropylmalate dehydrogenase GCE56_08345 PF00313 'Cold-shock' DNA-binding domain GCE56_08350 PF00011 Hsp20/alpha crystallin family GCE56_08360 PF01638 HxlR-like helix-turn-helix GCE56_08365 PF05368 NmrA-like family GCE56_08375 PF00485 Phosphoribulokinase / Uridine kinase family GCE56_08395 PF02195 ParB-like nuclease domain GCE56_08400 PF01507 Phosphoadenosine phosphosulfate reductase family GCE56_08400 PF11922 Domain of unknown function (DUF3440) GCE56_08405 PF08242 Methyltransferase domain GCE56_08415 PF08349 Protein of unknown function (DUF1722) GCE56_08420 PF04325 Protein of unknown function (DUF465) GCE56_08450 PF00557 Metallopeptidase family M24 GCE56_08455 PF06530 Phage antitermination protein Q GCE56_08460 PF00561 alpha/beta hydrolase fold GCE56_08465 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system GCE56_08470 PF02811 PHP domain GCE56_08485 PF00582 Universal stress protein family GCE56_08490 PF00210 Ferritin-like domain GCE56_08495 PF04234 CopC domain GCE56_08500 PF05425 Copper resistance protein D GCE56_08505 PF10709 Protein of unknown function (DUF2511) GCE56_08515 PF02470 MlaD protein GCE56_08520 PF04403 Paraquat-inducible protein A GCE56_08525 PF13185 GAF domain GCE56_08530 PF17516 ProQ C-terminal domain GCE56_08530 PF04352 ProQ/FINO family GCE56_08535 PF11818 C-terminal domain of tail specific protease (DUF3340) GCE56_08535 PF17804 Tail specific protease N-terminal domain GCE56_08535 PF03572 Peptidase family S41 GCE56_08535 PF00595 PDZ domain GCE56_08545 PF01435 Peptidase family M48 GCE56_08560 PF04307 LexA-binding, inner membrane-associated putative hydrolase GCE56_08565 PF13419 Haloacid dehalogenase-like hydrolase GCE56_08570 PF14002 YniB-like protein GCE56_08575 PF03881 Fructosamine kinase GCE56_08580 PF00950 ABC 3 transport family GCE56_08585 PF00950 ABC 3 transport family GCE56_08590 PF00005 ABC transporter GCE56_08595 PF01297 Zinc-uptake complex component A periplasmic GCE56_08600 PF01464 Transglycosylase SLT domain GCE56_08605 PF01914 MarC family integral membrane protein GCE56_08615 PF01588 Putative tRNA binding domain GCE56_08625 PF09160 FimH, mannose binding GCE56_08630 PF03129 Anticodon binding domain GCE56_08630 PF02824 TGS domain GCE56_08630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GCE56_08630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GCE56_08635 PF05198 Translation initiation factor IF-3, N-terminal domain GCE56_08635 PF00707 Translation initiation factor IF-3, C-terminal domain GCE56_08640 PF01632 Ribosomal protein L35 GCE56_08645 PF00453 Ribosomal protein L20 GCE56_08655 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain GCE56_08655 PF01409 tRNA synthetases class II core domain (F) GCE56_08660 PF03147 Ferredoxin-fold anticodon binding domain GCE56_08660 PF03484 tRNA synthetase B5 domain GCE56_08660 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain GCE56_08660 PF01588 Putative tRNA binding domain GCE56_08660 PF03483 B3/4 domain GCE56_08665 PF00216 Bacterial DNA-binding protein GCE56_08670 PF01032 FecCD transport family GCE56_08675 PF00005 ABC transporter GCE56_08680 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GCE56_08685 PF00535 Glycosyl transferase family 2 GCE56_08690 PF00551 Formyl transferase GCE56_08690 PF02911 Formyl transferase, C-terminal domain GCE56_08690 PF01370 NAD dependent epimerase/dehydratase family GCE56_08695 PF01522 Polysaccharide deacetylase GCE56_08700 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase GCE56_08705 PF00892 EamA-like transporter family GCE56_08710 PF00892 EamA-like transporter family GCE56_08715 PF00877 NlpC/P60 family GCE56_08720 PF03099 Biotin/lipoate A/B protein ligase family GCE56_08720 PF10437 Bacterial lipoate protein ligase C-terminus GCE56_08725 PF12833 Helix-turn-helix domain GCE56_08730 PF01266 FAD dependent oxidoreductase GCE56_08735 PF07729 FCD domain GCE56_08735 PF00392 Bacterial regulatory proteins, gntR family GCE56_08750 PF09335 SNARE associated Golgi protein GCE56_08755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GCE56_08755 PF00205 Thiamine pyrophosphate enzyme, central domain GCE56_08755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GCE56_08760 PF03306 Alpha-acetolactate decarboxylase GCE56_08775 PF13954 PapC N-terminal domain GCE56_08775 PF00577 Outer membrane usher protein GCE56_08780 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_08780 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_08810 PF03527 RHS protein GCE56_08825 PF01926 50S ribosome-binding GTPase GCE56_08825 PF06071 Protein of unknown function (DUF933) GCE56_08830 PF01195 Peptidyl-tRNA hydrolase GCE56_08835 PF10762 Protein of unknown function (DUF2583) GCE56_08840 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase GCE56_08840 PF14572 Phosphoribosyl synthetase-associated domain GCE56_08845 PF08544 GHMP kinases C terminal GCE56_08845 PF00288 GHMP kinases N terminal domain GCE56_08850 PF03550 Outer membrane lipoprotein LolB GCE56_08855 PF01488 Shikimate / quinate 5-dehydrogenase GCE56_08855 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain GCE56_08855 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain GCE56_08860 PF03462 PCRF domain GCE56_08860 PF00472 RF-1 domain GCE56_08865 PF17827 PrmC N-terminal domain GCE56_08865 PF13847 Methyltransferase domain GCE56_08870 PF13369 Transglutaminase-like superfamily GCE56_08875 PF00793 DAHP synthetase I family GCE56_08880 PF16199 Radical_SAM C-terminal domain GCE56_08880 PF04055 Radical SAM superfamily GCE56_08895 PF00916 Sulfate permease family GCE56_08895 PF01740 STAS domain GCE56_08905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GCE56_08920 PF02613 Nitrate reductase delta subunit GCE56_08930 PF07690 Major Facilitator Superfamily GCE56_08935 PF13302 Acetyltransferase (GNAT) domain GCE56_08940 PF03023 Lipid II flippase MurJ GCE56_08950 PF03485 Arginyl tRNA synthetase N terminal domain GCE56_08950 PF05746 DALR anticodon binding domain GCE56_08950 PF00750 tRNA synthetases class I (R) GCE56_08955 PF06185 YecM protein GCE56_08960 PF03932 CutC family GCE56_08970 PF00005 ABC transporter GCE56_08970 PF16326 ABC transporter C-terminal domain GCE56_08970 PF12848 ABC transporter GCE56_08975 PF08003 Protein of unknown function (DUF1698) GCE56_08980 PF13649 Methyltransferase domain GCE56_08985 PF01124 MAPEG family GCE56_08990 PF02938 GAD domain GCE56_08990 PF00152 tRNA synthetases class II (D, K and N) GCE56_08990 PF01336 OB-fold nucleic acid binding domain GCE56_08995 PF00293 NUDIX domain GCE56_09000 PF01709 Transcriptional regulator GCE56_09005 PF02075 Crossover junction endodeoxyribonuclease RuvC GCE56_09010 PF07499 RuvA, C-terminal domain GCE56_09010 PF01330 RuvA N terminal domain GCE56_09015 PF05491 RuvB C-terminal winged helix domain GCE56_09015 PF05496 Holliday junction DNA helicase RuvB P-loop domain GCE56_09015 PF17864 RuvB AAA lid domain GCE56_09020 PF05638 Type VI secretion system effector, Hcp GCE56_09065 PF13333 Integrase core domain GCE56_09065 PF00665 Integrase core domain GCE56_09065 PF13276 HTH-like domain GCE56_09090 PF00950 ABC 3 transport family GCE56_09095 PF00005 ABC transporter GCE56_09100 PF01297 Zinc-uptake complex component A periplasmic GCE56_09105 PF08525 Opacity-associated protein A N-terminal motif GCE56_09105 PF01551 Peptidase family M23 GCE56_09105 PF01476 LysM domain GCE56_09110 PF03279 Bacterial lipid A biosynthesis acyltransferase GCE56_09115 PF00224 Pyruvate kinase, barrel domain GCE56_09115 PF02887 Pyruvate kinase, alpha/beta domain GCE56_09120 PF01380 SIS domain GCE56_09120 PF01418 Helix-turn-helix domain, rpiR family GCE56_09125 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain GCE56_09125 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain GCE56_09130 PF00893 Small Multidrug Resistance protein GCE56_09135 PF00893 Small Multidrug Resistance protein GCE56_09140 PF11066 Protein of unknown function (DUF2867) GCE56_09140 PF13460 NAD(P)H-binding GCE56_09145 PF01042 Endoribonuclease L-PSP GCE56_09150 PF13307 Helicase C-terminal domain GCE56_09150 PF04851 Type III restriction enzyme, res subunit GCE56_09155 PF00814 Glycoprotease family GCE56_09160 PF03843 Outer membrane lipoprotein Slp family GCE56_09165 PF13193 AMP-binding enzyme C-terminal domain GCE56_09165 PF00501 AMP-binding enzyme GCE56_09170 PF01612 3'-5' exonuclease GCE56_09170 PF00570 HRDC domain GCE56_09175 PF03776 Septum formation topological specificity factor MinE GCE56_09180 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain GCE56_09185 PF05209 Septum formation inhibitor MinC, N-terminal domain GCE56_09185 PF03775 Septum formation inhibitor MinC, C-terminal domain GCE56_09190 PF05166 YcgL domain GCE56_09195 PF13406 Transglycosylase SLT domain GCE56_09200 PF01557 Fumarylacetoacetate (FAA) hydrolase family GCE56_09205 PF03692 Putative zinc- or iron-chelating domain GCE56_09210 PF03649 Uncharacterised protein family (UPF0014) GCE56_09215 PF00005 ABC transporter GCE56_09225 PF12833 Helix-turn-helix domain GCE56_09225 PF06445 GyrI-like small molecule binding domain GCE56_09230 PF00440 Bacterial regulatory proteins, tetR family GCE56_09235 PF02203 Tar ligand binding domain homologue GCE56_09235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GCE56_09235 PF00672 HAMP domain GCE56_09240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GCE56_09240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GCE56_09245 PF11739 Dicarboxylate transport GCE56_09250 PF13617 YnbE-like lipoprotein GCE56_09255 PF07027 Protein of unknown function (DUF1318) GCE56_09265 PF00577 Outer membrane usher protein GCE56_09265 PF13954 PapC N-terminal domain GCE56_09265 PF13953 PapC C-terminal domain GCE56_09280 PF02525 Flavodoxin-like fold GCE56_09290 PF02525 Flavodoxin-like fold GCE56_09295 PF00271 Helicase conserved C-terminal domain GCE56_09295 PF11898 Domain of unknown function (DUF3418) GCE56_09295 PF00270 DEAD/DEAH box helicase GCE56_09295 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold GCE56_09295 PF04408 Helicase associated domain (HA2) GCE56_09310 PF13953 PapC C-terminal domain GCE56_09310 PF00577 Outer membrane usher protein GCE56_09310 PF13954 PapC N-terminal domain GCE56_09315 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_09315 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_09325 PF13520 Amino acid permease GCE56_09330 PF07338 Protein of unknown function (DUF1471) GCE56_09335 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch GCE56_09335 PF05222 Alanine dehydrogenase/PNT, N-terminal domain GCE56_09335 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GCE56_09340 PF02233 NAD(P) transhydrogenase beta subunit GCE56_09345 PF00582 Universal stress protein family GCE56_09350 PF00027 Cyclic nucleotide-binding domain GCE56_09350 PF00325 Bacterial regulatory proteins, crp family GCE56_09355 PF01568 Molydopterin dinucleotide binding domain GCE56_09355 PF00384 Molybdopterin oxidoreductase GCE56_09355 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GCE56_09360 PF13247 4Fe-4S dicluster domain GCE56_09360 PF12800 4Fe-4S binding domain GCE56_09375 PF00550 Phosphopantetheine attachment site GCE56_09375 PF08659 KR domain GCE56_09375 PF02801 Beta-ketoacyl synthase, C-terminal domain GCE56_09375 PF00109 Beta-ketoacyl synthase, N-terminal domain GCE56_09375 PF08240 Alcohol dehydrogenase GroES-like domain GCE56_09375 PF14765 Polyketide synthase dehydratase GCE56_09375 PF00698 Acyl transferase domain GCE56_09375 PF16197 Ketoacyl-synthetase C-terminal extension GCE56_09380 PF00282 Pyridoxal-dependent decarboxylase conserved domain GCE56_09385 PF03551 Transcriptional regulator PadR-like family GCE56_09395 PF10417 C-terminal domain of 1-Cys peroxiredoxin GCE56_09395 PF00578 AhpC/TSA family GCE56_09400 PF07992 Pyridine nucleotide-disulphide oxidoreductase GCE56_09400 PF13192 Thioredoxin domain GCE56_09410 PF04606 Ogr/Delta-like zinc finger GCE56_09445 PF01048 Phosphorylase superfamily GCE56_09445 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus GCE56_09450 PF00589 Phage integrase family GCE56_09450 PF02899 Phage integrase, N-terminal SAM-like domain GCE56_09455 PF01112 Asparaginase GCE56_09460 PF13533 Biotin-lipoyl like GCE56_09465 PF00005 ABC transporter GCE56_09475 PF00486 Transcriptional regulatory protein, C terminal GCE56_09475 PF00072 Response regulator receiver domain GCE56_09495 PF01970 Tripartite tricarboxylate transporter TctA family GCE56_09500 PF02733 Dak1 domain GCE56_09505 PF02734 DAK2 domain GCE56_09510 PF00701 Dihydrodipicolinate synthetase family GCE56_09515 PF00291 Pyridoxal-phosphate dependent enzyme GCE56_09520 PF01042 Endoribonuclease L-PSP GCE56_09530 PF01810 LysE type translocator GCE56_09540 PF00730 HhH-GPD superfamily base excision DNA repair protein GCE56_09545 PF02805 Metal binding domain of Ada GCE56_09545 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GCE56_09545 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GCE56_09545 PF12833 Helix-turn-helix domain GCE56_09560 PF01820 D-ala D-ala ligase N-terminus GCE56_09560 PF07478 D-ala D-ala ligase C-terminus GCE56_09565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GCE56_09580 PF03180 NLPA lipoprotein GCE56_09585 PF01053 Cys/Met metabolism PLP-dependent enzyme GCE56_09600 PF07690 Major Facilitator Superfamily GCE56_09605 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit GCE56_09610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_09610 PF03466 LysR substrate binding domain GCE56_09615 PF07690 Major Facilitator Superfamily GCE56_09620 PF17934 Tetracyclin repressor-like, C-terminal domain GCE56_09620 PF00440 Bacterial regulatory proteins, tetR family GCE56_09630 PF12848 ABC transporter GCE56_09630 PF00005 ABC transporter GCE56_09635 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 GCE56_09640 PF01979 Amidohydrolase family GCE56_09645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_09645 PF03466 LysR substrate binding domain GCE56_09650 PF07690 Major Facilitator Superfamily GCE56_09670 PF04632 Fusaric acid resistance protein family GCE56_09675 PF02321 Outer membrane efflux protein GCE56_09685 PF00012 Hsp70 protein GCE56_09690 PF01212 Beta-eliminating lyase GCE56_09700 PF01810 LysE type translocator GCE56_09705 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GCE56_09705 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GCE56_09715 PF03553 Na+/H+ antiporter family GCE56_09720 PF00155 Aminotransferase class I and II GCE56_09725 PF12833 Helix-turn-helix domain GCE56_09730 PF09905 DNA-binding protein VF530 GCE56_09760 PF05638 Type VI secretion system effector, Hcp GCE56_09780 PF05433 Glycine zipper 2TM domain GCE56_09790 PF00106 short chain dehydrogenase GCE56_09795 PF06932 Protein of unknown function (DUF1283) GCE56_09810 PF00480 ROK family GCE56_09815 PF03466 LysR substrate binding domain GCE56_09815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_09820 PF07690 Major Facilitator Superfamily GCE56_09825 PF05472 DNA replication terminus site-binding protein (Ter protein) GCE56_09830 PF10415 Fumarase C C-terminus GCE56_09830 PF00206 Lyase GCE56_09835 PF06097 Bacterial protein of unknown function (DUF945) GCE56_09845 PF00962 Adenosine/AMP deaminase GCE56_09850 PF13593 SBF-like CPA transporter family (DUF4137) GCE56_09855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GCE56_09855 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GCE56_09860 PF10754 Protein of unknown function (DUF2569) GCE56_09865 PF02508 Rnf-Nqr subunit, membrane protein GCE56_09870 PF04060 Putative Fe-S cluster GCE56_09875 PF13237 4Fe-4S dicluster domain GCE56_09875 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit GCE56_09875 PF13375 RnfC Barrel sandwich hybrid domain GCE56_09875 PF10531 SLBB domain GCE56_09880 PF03116 NQR2, RnfD, RnfE family GCE56_09885 PF04205 FMN-binding domain GCE56_09890 PF02508 Rnf-Nqr subunit, membrane protein GCE56_09895 PF10576 Iron-sulfur binding domain of endonuclease III GCE56_09895 PF00633 Helix-hairpin-helix motif GCE56_09895 PF00730 HhH-GPD superfamily base excision DNA repair protein GCE56_09900 PF08206 Ribonuclease B OB domain GCE56_09900 PF00575 S1 RNA binding domain GCE56_09900 PF00773 RNB domain GCE56_09905 PF01253 Translation initiation factor SUI1 GCE56_09910 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family GCE56_09915 PF18073 Rubredoxin metal binding domain GCE56_09920 PF06305 Lipopolysaccharide assembly protein A domain GCE56_09925 PF01569 PAP2 superfamily GCE56_09930 PF00925 GTP cyclohydrolase II GCE56_09935 PF03180 NLPA lipoprotein GCE56_09945 PF00330 Aconitase family (aconitate hydratase) GCE56_09945 PF00694 Aconitase C-terminal domain GCE56_09955 PF03466 LysR substrate binding domain GCE56_09955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_09985 PF00080 Copper/zinc superoxide dismutase (SODC) GCE56_09990 PF08272 Topoisomerase I zinc-ribbon-like GCE56_09990 PF01396 Topoisomerase DNA binding C4 zinc finger GCE56_09990 PF01751 Toprim domain GCE56_09990 PF01131 DNA topoisomerase GCE56_09995 PF10692 Protein of unknown function (DUF2498) GCE56_10000 PF08496 Peptidase family S49 N-terminal GCE56_10000 PF01343 Peptidase family S49 GCE56_10005 PF00106 short chain dehydrogenase GCE56_10010 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP GCE56_10020 PF01479 S4 domain GCE56_10020 PF00849 RNA pseudouridylate synthase GCE56_10025 PF01300 Telomere recombination GCE56_10030 PF02811 PHP domain GCE56_10035 PF00425 chorismate binding enzyme GCE56_10035 PF04715 Anthranilate synthase component I, N terminal region GCE56_10040 PF00117 Glutamine amidotransferase class-I GCE56_10045 PF02885 Glycosyl transferase family, helical bundle domain GCE56_10045 PF00591 Glycosyl transferase family, a/b domain GCE56_10050 PF00218 Indole-3-glycerol phosphate synthase GCE56_10050 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase GCE56_10055 PF00291 Pyridoxal-phosphate dependent enzyme GCE56_10060 PF00290 Tryptophan synthase alpha chain GCE56_10070 PF03922 OmpW family GCE56_10080 PF01740 STAS domain GCE56_10080 PF00916 Sulfate permease family GCE56_10090 PF03061 Thioesterase superfamily GCE56_10095 PF03544 Gram-negative bacterial TonB protein C-terminal GCE56_10105 PF13396 Phospholipase_D-nuclease N-terminal GCE56_10105 PF13091 PLD-like domain GCE56_10110 PF04269 Protein of unknown function, DUF440 GCE56_10115 PF13505 Outer membrane protein beta-barrel domain GCE56_10120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GCE56_10130 PF01810 LysE type translocator GCE56_10135 PF01171 PP-loop family GCE56_10140 PF01544 CorA-like Mg2+ transporter protein GCE56_10155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GCE56_10160 PF08534 Redoxin GCE56_10165 PF18024 Helix-turn-helix domain GCE56_10165 PF00158 Sigma-54 interaction domain GCE56_10175 PF05128 Domain of unknown function (DUF697) GCE56_10180 PF04317 YcjX-like family, DUF463 GCE56_10190 PF04024 PspC domain GCE56_10195 PF06667 Phage shock protein B GCE56_10200 PF04012 PspA/IM30 family GCE56_10205 PF00158 Sigma-54 interaction domain GCE56_10205 PF02954 Bacterial regulatory protein, Fis family GCE56_10210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GCE56_10215 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_10220 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_10220 PF12911 N-terminal TM domain of oligopeptide transport permease C GCE56_10225 PF00005 ABC transporter GCE56_10225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GCE56_10230 PF00005 ABC transporter GCE56_10240 PF00043 Glutathione S-transferase, C-terminal domain GCE56_10240 PF02798 Glutathione S-transferase, N-terminal domain GCE56_10245 PF08543 Phosphomethylpyrimidine kinase GCE56_10250 PF01479 S4 domain GCE56_10250 PF00579 tRNA synthetases class I (W and Y) GCE56_10255 PF01243 Pyridoxamine 5'-phosphate oxidase GCE56_10255 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region GCE56_10260 PF03702 Anhydro-N-acetylmuramic acid kinase GCE56_10265 PF05433 Glycine zipper 2TM domain GCE56_10270 PF01047 MarR family GCE56_10275 PF06945 Protein of unknown function (DUF1289) GCE56_10280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GCE56_10285 PF00929 Exonuclease GCE56_10290 PF00462 Glutaredoxin GCE56_10300 PF01925 Sulfite exporter TauE/SafE GCE56_10305 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain GCE56_10305 PF02777 Iron/manganese superoxide dismutases, C-terminal domain GCE56_10315 PF00356 Bacterial regulatory proteins, lacI family GCE56_10320 PF03466 LysR substrate binding domain GCE56_10320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_10325 PF07690 Major Facilitator Superfamily GCE56_10335 PF00677 Lumazine binding domain GCE56_10340 PF01554 MatE GCE56_10355 PF02887 Pyruvate kinase, alpha/beta domain GCE56_10355 PF00224 Pyruvate kinase, barrel domain GCE56_10360 PF13520 Amino acid permease GCE56_10365 PF00282 Pyridoxal-dependent decarboxylase conserved domain GCE56_10375 PF04728 Lipoprotein leucine-zipper GCE56_10380 PF03734 L,D-transpeptidase catalytic domain GCE56_10380 PF01476 LysM domain GCE56_10380 PF17969 L,D-transpeptidase C-terminal domain GCE56_10385 PF02657 Fe-S metabolism associated domain GCE56_10390 PF00266 Aminotransferase class-V GCE56_10395 PF01458 Uncharacterized protein family (UPF0051) GCE56_10400 PF00005 ABC transporter GCE56_10405 PF01458 Uncharacterized protein family (UPF0051) GCE56_10410 PF01521 Iron-sulphur cluster biosynthesis GCE56_10420 PF03061 Thioesterase superfamily GCE56_10425 PF01565 FAD binding domain GCE56_10425 PF13183 4Fe-4S dicluster domain GCE56_10425 PF02913 FAD linked oxidases, C-terminal domain GCE56_10430 PF01594 AI-2E family transporter GCE56_10435 PF02896 PEP-utilising enzyme, TIM barrel domain GCE56_10435 PF00391 PEP-utilising enzyme, mobile domain GCE56_10435 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain GCE56_10440 PF03618 Kinase/pyrophosphorylase GCE56_10445 PF00793 DAHP synthetase I family GCE56_10450 PF10636 Hemin uptake protein hemP GCE56_10455 PF00593 TonB dependent receptor GCE56_10455 PF07715 TonB-dependent Receptor Plug Domain GCE56_10460 PF00593 TonB dependent receptor GCE56_10460 PF07715 TonB-dependent Receptor Plug Domain GCE56_10465 PF05171 Haemin-degrading HemS.ChuX domain GCE56_10470 PF01497 Periplasmic binding protein GCE56_10475 PF01032 FecCD transport family GCE56_10480 PF00005 ABC transporter GCE56_10485 PF01037 Lrp/AsnC ligand binding domain GCE56_10490 PF01810 LysE type translocator GCE56_10495 PF00155 Aminotransferase class I and II GCE56_10495 PF00392 Bacterial regulatory proteins, gntR family GCE56_10500 PF01654 Cytochrome bd terminal oxidase subunit I GCE56_10505 PF02322 Cytochrome bd terminal oxidase subunit II GCE56_10520 PF05656 Protein of unknown function (DUF805) GCE56_10525 PF02562 PhoH-like protein GCE56_10535 PF04231 Endonuclease I GCE56_10545 PF12821 Threonine/Serine exporter, ThrE GCE56_10550 PF06738 Putative threonine/serine exporter GCE56_10565 PF00582 Universal stress protein family GCE56_10575 PF00582 Universal stress protein family GCE56_10580 PF01256 Carbohydrate kinase GCE56_10585 PF10769 Protein of unknown function (DUF2594) GCE56_10595 PF00490 Delta-aminolevulinic acid dehydratase GCE56_10605 PF07969 Amidohydrolase family GCE56_10610 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin GCE56_10615 PF00732 GMC oxidoreductase GCE56_10615 PF05199 GMC oxidoreductase GCE56_10620 PF00171 Aldehyde dehydrogenase family GCE56_10625 PF13977 BetI-type transcriptional repressor, C-terminal GCE56_10625 PF00440 Bacterial regulatory proteins, tetR family GCE56_10630 PF02028 BCCT, betaine/carnitine/choline family transporter GCE56_10635 PF00155 Aminotransferase class I and II GCE56_10645 PF00419 Fimbrial protein GCE56_10650 PF13953 PapC C-terminal domain GCE56_10650 PF13954 PapC N-terminal domain GCE56_10650 PF00577 Outer membrane usher protein GCE56_10655 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_10655 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_10660 PF00419 Fimbrial protein GCE56_10665 PF00419 Fimbrial protein GCE56_10670 PF01381 Helix-turn-helix GCE56_10675 PF00005 ABC transporter GCE56_10675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GCE56_10680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GCE56_10680 PF00005 ABC transporter GCE56_10685 PF12911 N-terminal TM domain of oligopeptide transport permease C GCE56_10685 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_10690 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_10695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GCE56_10700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GCE56_10705 PF10414 Sirohaem synthase dimerisation region GCE56_10705 PF14824 Sirohaem biosynthesis protein central GCE56_10705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GCE56_10710 PF13806 Rieske-like [2Fe-2S] domain GCE56_10715 PF18267 Rubredoxin NAD+ reductase C-terminal domain GCE56_10715 PF04324 BFD-like [2Fe-2S] binding domain GCE56_10715 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GCE56_10715 PF07992 Pyridine nucleotide-disulphide oxidoreductase GCE56_10715 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GCE56_10720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GCE56_10725 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_10735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GCE56_10735 PF00005 ABC transporter GCE56_10740 PF00005 ABC transporter GCE56_10740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GCE56_10745 PF01914 MarC family integral membrane protein GCE56_10750 PF00171 Aldehyde dehydrogenase family GCE56_10750 PF00465 Iron-containing alcohol dehydrogenase GCE56_10755 PF00265 Thymidine kinase GCE56_10760 PF00816 H-NS histone family GCE56_10765 PF01370 NAD dependent epimerase/dehydratase family GCE56_10770 PF00483 Nucleotidyl transferase GCE56_10775 PF00072 Response regulator receiver domain GCE56_10780 PF02810 SEC-C motif GCE56_10785 PF00551 Formyl transferase GCE56_10785 PF01842 ACT domain GCE56_10795 PF03466 LysR substrate binding domain GCE56_10795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_10800 PF03372 Endonuclease/Exonuclease/phosphatase family GCE56_10805 PF01131 DNA topoisomerase GCE56_10805 PF01751 Toprim domain GCE56_10810 PF02769 AIR synthase related protein, C-terminal domain GCE56_10810 PF00586 AIR synthase related protein, N-terminal domain GCE56_10815 PF00881 Nitroreductase family GCE56_10820 PF01343 Peptidase family S49 GCE56_10825 PF00710 Asparaginase, N-terminal GCE56_10825 PF17763 Glutaminase/Asparaginase C-terminal domain GCE56_10830 PF00857 Isochorismatase family GCE56_10835 PF07023 Protein of unknown function (DUF1315) GCE56_10840 PF01641 SelR domain GCE56_10845 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GCE56_10845 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GCE56_10850 PF01263 Aldose 1-epimerase GCE56_10855 PF06629 MltA-interacting protein MipA GCE56_10860 PF07503 HypF finger GCE56_10860 PF17788 HypF Kae1-like domain GCE56_10860 PF00708 Acylphosphatase GCE56_10860 PF01300 Telomere recombination GCE56_10865 PF00842 Alanine racemase, C-terminal domain GCE56_10865 PF01168 Alanine racemase, N-terminal domain GCE56_10870 PF01266 FAD dependent oxidoreductase GCE56_10875 PF00392 Bacterial regulatory proteins, gntR family GCE56_10875 PF07840 FadR C-terminal domain GCE56_10880 PF06450 Bacterial Na+/H+ antiporter B (NhaB) GCE56_10885 PF02600 Disulfide bond formation protein DsbB GCE56_10895 PF00893 Small Multidrug Resistance protein GCE56_10900 PF07690 Major Facilitator Superfamily GCE56_10915 PF03824 High-affinity nickel-transport protein GCE56_10920 PF06226 Protein of unknown function (DUF1007) GCE56_10950 PF01066 CDP-alcohol phosphatidyltransferase GCE56_10955 PF08459 UvrC Helix-hairpin-helix N-terminal GCE56_10955 PF01541 GIY-YIG catalytic domain GCE56_10955 PF02151 UvrB/uvrC motif GCE56_10960 PF00072 Response regulator receiver domain GCE56_10960 PF00196 Bacterial regulatory proteins, luxR family GCE56_10965 PF00881 Nitroreductase family GCE56_10970 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded GCE56_10975 PF02126 Phosphotriesterase family GCE56_10990 PF00294 pfkB family carbohydrate kinase GCE56_11030 PF00717 Peptidase S24-like GCE56_11030 PF01381 Helix-turn-helix GCE56_11035 PF00005 ABC transporter GCE56_11040 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_11050 PF04198 Putative sugar-binding domain GCE56_11055 PF03091 CutA1 divalent ion tolerance protein GCE56_11070 PF10127 RNA repair pathway DNA polymerase beta family GCE56_11235 PF05866 Endodeoxyribonuclease RusA GCE56_11245 PF01695 IstB-like ATP binding protein GCE56_11325 PF13356 Arm DNA-binding domain GCE56_11325 PF14659 Phage integrase, N-terminal SAM-like domain GCE56_11325 PF00589 Phage integrase family GCE56_11330 PF00117 Glutamine amidotransferase class-I GCE56_11330 PF00958 GMP synthase C terminal domain GCE56_11330 PF02540 NAD synthase GCE56_11335 PF00571 CBS domain GCE56_11335 PF00478 IMP dehydrogenase / GMP reductase domain GCE56_11340 PF02601 Exonuclease VII, large subunit GCE56_11340 PF13742 OB-fold nucleic acid binding domain GCE56_11345 PF00593 TonB dependent receptor GCE56_11345 PF07715 TonB-dependent Receptor Plug Domain GCE56_11350 PF00326 Prolyl oligopeptidase family GCE56_11350 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain GCE56_11365 PF01515 Phosphate acetyl/butaryl transferase GCE56_11365 PF03949 Malic enzyme, NAD binding domain GCE56_11365 PF00390 Malic enzyme, N-terminal domain GCE56_11370 PF00196 Bacterial regulatory proteins, luxR family GCE56_11370 PF00072 Response regulator receiver domain GCE56_11380 PF03960 ArsC family GCE56_11385 PF07687 Peptidase dimerisation domain GCE56_11385 PF01546 Peptidase family M20/M25/M40 GCE56_11390 PF02557 D-alanyl-D-alanine carboxypeptidase GCE56_11400 PF04304 Protein of unknown function (DUF454) GCE56_11405 PF13980 Uncharacterised protein family (UPF0370) GCE56_11410 PF08351 Domain of unknown function (DUF1726) GCE56_11410 PF13718 GNAT acetyltransferase 2 GCE56_11410 PF05127 Helicase GCE56_11410 PF17176 tRNA-binding domain GCE56_11415 PF04284 Protein of unknown function (DUF441) GCE56_11420 PF04228 Putative neutral zinc metallopeptidase GCE56_11425 PF01259 SAICAR synthetase GCE56_11430 PF06804 NlpB/DapX lipoprotein GCE56_11435 PF00701 Dihydrodipicolinate synthetase family GCE56_11440 PF01842 ACT domain GCE56_11445 PF00578 AhpC/TSA family GCE56_11450 PF01594 AI-2E family transporter GCE56_11455 PF01435 Peptidase family M48 GCE56_11455 PF07720 Tetratricopeptide repeat GCE56_11460 PF03960 ArsC family GCE56_11465 PF03825 Nucleoside H+ symporter GCE56_11470 PF00308 Bacterial dnaA protein GCE56_11475 PF00924 Mechanosensitive ion channel GCE56_11480 PF00860 Permease family GCE56_11490 PF00586 AIR synthase related protein, N-terminal domain GCE56_11490 PF02769 AIR synthase related protein, C-terminal domain GCE56_11495 PF00551 Formyl transferase GCE56_11500 PF13302 Acetyltransferase (GNAT) domain GCE56_11505 PF02503 Polyphosphate kinase middle domain GCE56_11505 PF13090 Polyphosphate kinase C-terminal domain 2 GCE56_11505 PF17941 Polyphosphate kinase C-terminal domain 1 GCE56_11505 PF13089 Polyphosphate kinase N-terminal domain GCE56_11510 PF02541 Ppx/GppA phosphatase family GCE56_11515 PF03448 MgtE intracellular N domain GCE56_11515 PF00571 CBS domain GCE56_11515 PF01769 Divalent cation transporter GCE56_11525 PF07690 Major Facilitator Superfamily GCE56_11540 PF00854 POT family GCE56_11545 PF13533 Biotin-lipoyl like GCE56_11550 PF00873 AcrB/AcrD/AcrF family GCE56_11555 PF00873 AcrB/AcrD/AcrF family GCE56_11560 PF00512 His Kinase A (phospho-acceptor) domain GCE56_11560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_11560 PF00672 HAMP domain GCE56_11565 PF00072 Response regulator receiver domain GCE56_11565 PF00486 Transcriptional regulatory protein, C terminal GCE56_11575 PF00781 Diacylglycerol kinase catalytic domain GCE56_11580 PF01791 DeoC/LacD family aldolase GCE56_11585 PF08543 Phosphomethylpyrimidine kinase GCE56_11595 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP GCE56_11600 PF00324 Amino acid permease GCE56_11610 PF12833 Helix-turn-helix domain GCE56_11620 PF05525 Branched-chain amino acid transport protein GCE56_11625 PF01510 N-acetylmuramoyl-L-alanine amidase GCE56_11630 PF01235 Sodium:alanine symporter family GCE56_11635 PF06440 DNA polymerase III, theta subunit GCE56_11640 PF13995 YebF-like protein GCE56_11645 PF03701 Uncharacterised protein family (UPF0181) GCE56_11650 PF00425 chorismate binding enzyme GCE56_11650 PF04715 Anthranilate synthase component I, N terminal region GCE56_11655 PF00293 NUDIX domain GCE56_11660 PF03315 Serine dehydratase beta chain GCE56_11660 PF03313 Serine dehydratase alpha chain GCE56_11665 PF02659 Putative manganese efflux pump GCE56_11670 PF13847 Methyltransferase domain GCE56_11675 PF06146 Phosphate-starvation-inducible E GCE56_11680 PF00582 Universal stress protein family GCE56_11690 PF00582 Universal stress protein family GCE56_11695 PF00324 Amino acid permease GCE56_11705 PF00474 Sodium:solute symporter family GCE56_11710 PF00171 Aldehyde dehydrogenase family GCE56_11710 PF18327 Proline utilization A proline dehydrogenase N-terminal domain GCE56_11710 PF14850 DNA-binding domain of Proline dehydrogenase GCE56_11710 PF01619 Proline dehydrogenase GCE56_11720 PF04545 Sigma-70, region 4 GCE56_11720 PF04539 Sigma-70 region 3 GCE56_11720 PF04542 Sigma-70 region 2 GCE56_11725 PF00669 Bacterial flagellin N-terminal helical region GCE56_11725 PF00700 Bacterial flagellin C-terminal helical region GCE56_11730 PF00669 Bacterial flagellin N-terminal helical region GCE56_11730 PF00700 Bacterial flagellin C-terminal helical region GCE56_11735 PF07196 Flagellin hook IN motif GCE56_11735 PF02465 Flagellar hook-associated protein 2 N-terminus GCE56_11735 PF07195 Flagellar hook-associated protein 2 C-terminus GCE56_11740 PF02561 Flagellar protein FliS GCE56_11745 PF05400 Flagellar protein FliT GCE56_11775 PF02049 Flagellar hook-basal body complex protein FliE GCE56_11780 PF01514 Secretory protein of YscJ/FliF family GCE56_11780 PF08345 Flagellar M-ring protein C-terminal GCE56_11785 PF14841 FliG middle domain GCE56_11785 PF14842 FliG N-terminal domain GCE56_11785 PF01706 FliG C-terminal domain GCE56_11790 PF02108 Flagellar assembly protein FliH GCE56_11795 PF18269 T3SS EscN ATPase C-terminal domain GCE56_11795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GCE56_11800 PF02050 Flagellar FliJ protein GCE56_11805 PF02120 Flagellar hook-length control protein FliK GCE56_11810 PF03748 Flagellar basal body-associated protein FliL GCE56_11815 PF02154 Flagellar motor switch protein FliM GCE56_11815 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GCE56_11820 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GCE56_11820 PF16973 Flagellar motor switch protein FliN N-terminal GCE56_11825 PF04347 Flagellar biosynthesis protein, FliO GCE56_11830 PF00813 FliP family GCE56_11835 PF01313 Bacterial export proteins, family 3 GCE56_11840 PF01311 Bacterial export proteins, family 1 GCE56_11845 PF00669 Bacterial flagellin N-terminal helical region GCE56_11850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GCE56_11850 PF00460 Flagella basal body rod protein GCE56_11855 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase GCE56_11855 PF10135 Rod binding protein GCE56_11860 PF02119 Flagellar P-ring protein GCE56_11865 PF02107 Flagellar L-ring protein GCE56_11870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GCE56_11870 PF00460 Flagella basal body rod protein GCE56_11875 PF00460 Flagella basal body rod protein GCE56_11875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GCE56_11880 PF07559 Flagellar basal body protein FlaE GCE56_11880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GCE56_11880 PF00460 Flagella basal body rod protein GCE56_11885 PF03963 Flagellar hook capping protein - N-terminal region GCE56_11885 PF13860 FlgD Ig-like domain GCE56_11885 PF13861 FlgD Tudor-like domain GCE56_11890 PF00460 Flagella basal body rod protein GCE56_11890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GCE56_11895 PF00460 Flagella basal body rod protein GCE56_11900 PF13144 Chaperone for flagella basal body P-ring formation GCE56_11900 PF17656 FlgA N-terminal domain GCE56_11905 PF04316 Anti-sigma-28 factor, FlgM GCE56_11910 PF05130 FlgN protein GCE56_11915 PF13018 Extended Signal Peptide of Type V secretion system GCE56_11915 PF05860 haemagglutination activity domain GCE56_11915 PF13332 Hemagglutinin repeat GCE56_11915 PF04829 Pre-toxin domain with VENN motif GCE56_11925 PF00771 FHIPEP family GCE56_11930 PF01312 FlhB HrpN YscU SpaS Family GCE56_11940 PF04344 Chemotaxis phosphatase, CheZ GCE56_11945 PF00072 Response regulator receiver domain GCE56_11950 PF01339 CheB methylesterase GCE56_11950 PF00072 Response regulator receiver domain GCE56_11955 PF03705 CheR methyltransferase, all-alpha domain GCE56_11955 PF01739 CheR methyltransferase, SAM binding domain GCE56_11970 PF02308 MgtC family GCE56_11975 PF10781 Dextransucrase DSRB GCE56_11980 PF00313 'Cold-shock' DNA-binding domain GCE56_11985 PF10777 Inner membrane protein YlaC GCE56_12010 PF01979 Amidohydrolase family GCE56_12015 PF13991 BssS protein family GCE56_12025 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GCE56_12025 PF00384 Molybdopterin oxidoreductase GCE56_12025 PF01568 Molydopterin dinucleotide binding domain GCE56_12030 PF03916 Polysulphide reductase, NrfD GCE56_12035 PF13247 4Fe-4S dicluster domain GCE56_12040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_12040 PF00512 His Kinase A (phospho-acceptor) domain GCE56_12045 PF00196 Bacterial regulatory proteins, luxR family GCE56_12045 PF00072 Response regulator receiver domain GCE56_12050 PF03279 Bacterial lipid A biosynthesis acyltransferase GCE56_12055 PF07690 Major Facilitator Superfamily GCE56_12060 PF00854 POT family GCE56_12070 PF02567 Phenazine biosynthesis-like protein GCE56_12075 PF03061 Thioesterase superfamily GCE56_12085 PF03895 YadA-like membrane anchor domain GCE56_12085 PF13018 Extended Signal Peptide of Type V secretion system GCE56_12085 PF03895 YadA-like membrane anchor domain GCE56_12085 PF05662 Coiled stalk of trimeric autotransporter adhesin GCE56_12085 PF05658 Head domain of trimeric autotransporter adhesin GCE56_12085 PF05662 Coiled stalk of trimeric autotransporter adhesin GCE56_12085 PF05658 Head domain of trimeric autotransporter adhesin GCE56_12085 PF13018 Extended Signal Peptide of Type V secretion system GCE56_12090 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GCE56_12100 PF00072 Response regulator receiver domain GCE56_12100 PF00486 Transcriptional regulatory protein, C terminal GCE56_12105 PF00512 His Kinase A (phospho-acceptor) domain GCE56_12105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_12115 PF03591 AzlC protein GCE56_12125 PF01063 Amino-transferase class IV GCE56_12130 PF03729 Short repeat of unknown function (DUF308) GCE56_12140 PF00924 Mechanosensitive ion channel GCE56_12145 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GCE56_12145 PF01568 Molydopterin dinucleotide binding domain GCE56_12145 PF00384 Molybdopterin oxidoreductase GCE56_12150 PF12800 4Fe-4S binding domain GCE56_12150 PF13247 4Fe-4S dicluster domain GCE56_12155 PF04976 DMSO reductase anchor subunit (DmsC) GCE56_12165 PF10753 Toxin GhoT_OrtT GCE56_12260 PF00579 tRNA synthetases class I (W and Y) GCE56_12285 PF16359 RcsD-ABL domain GCE56_12285 PF01627 Hpt domain GCE56_12285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_12290 PF00196 Bacterial regulatory proteins, luxR family GCE56_12290 PF00072 Response regulator receiver domain GCE56_12295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_12295 PF09456 RcsC Alpha-Beta-Loop (ABL) GCE56_12295 PF00512 His Kinase A (phospho-acceptor) domain GCE56_12295 PF00072 Response regulator receiver domain GCE56_12300 PF03989 DNA gyrase C-terminal domain, beta-propeller GCE56_12300 PF00521 DNA gyrase/topoisomerase IV, subunit A GCE56_12310 PF02867 Ribonucleotide reductase, barrel domain GCE56_12310 PF00317 Ribonucleotide reductase, all-alpha domain GCE56_12310 PF03477 ATP cone domain GCE56_12315 PF00268 Ribonucleotide reductase, small chain GCE56_12320 PF00111 2Fe-2S iron-sulfur cluster binding domain GCE56_12325 PF06004 Bacterial protein of unknown function (DUF903) GCE56_12330 PF03222 Tryptophan/tyrosine permease family GCE56_12335 PF07437 YfaZ precursor GCE56_12340 PF06628 Catalase-related immune-responsive GCE56_12340 PF00199 Catalase GCE56_12345 PF00501 AMP-binding enzyme GCE56_12345 PF13193 AMP-binding enzyme C-terminal domain GCE56_12350 PF13378 Enolase C-terminal domain-like GCE56_12355 PF00378 Enoyl-CoA hydratase/isomerase GCE56_12360 PF12697 Alpha/beta hydrolase family GCE56_12365 PF16582 Middle domain of thiamine pyrophosphate GCE56_12365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GCE56_12370 PF00425 chorismate binding enzyme GCE56_12385 PF00361 Proton-conducting membrane transporter GCE56_12390 PF00361 Proton-conducting membrane transporter GCE56_12395 PF00361 Proton-conducting membrane transporter GCE56_12395 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GCE56_12400 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L GCE56_12405 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 GCE56_12410 PF12838 4Fe-4S dicluster domain GCE56_12415 PF00146 NADH dehydrogenase GCE56_12420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GCE56_12420 PF00384 Molybdopterin oxidoreductase GCE56_12420 PF01568 Molydopterin dinucleotide binding domain GCE56_12420 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GCE56_12425 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region GCE56_12425 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit GCE56_12425 PF10531 SLBB domain GCE56_12435 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit GCE56_12435 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit GCE56_12440 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit GCE56_12445 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 GCE56_12455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_12455 PF03466 LysR substrate binding domain GCE56_12460 PF00155 Aminotransferase class I and II GCE56_12470 PF03600 Citrate transporter GCE56_12470 PF02080 TrkA-C domain GCE56_12475 PF13419 Haloacid dehalogenase-like hydrolase GCE56_12480 PF03887 YfbU domain GCE56_12485 PF04217 Protein of unknown function, DUF412 GCE56_12490 PF00871 Acetokinase family GCE56_12495 PF07085 DRTGG domain GCE56_12495 PF01515 Phosphate acetyl/butaryl transferase GCE56_12500 PF01848 Hok/gef family GCE56_12505 PF01848 Hok/gef family GCE56_12510 PF01848 Hok/gef family GCE56_12515 PF01011 PQQ enzyme repeat GCE56_12520 PF00842 Alanine racemase, C-terminal domain GCE56_12520 PF01168 Alanine racemase, N-terminal domain GCE56_12525 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) GCE56_12530 PF01867 CRISPR associated protein Cas1 GCE56_12540 PF09704 CRISPR-associated protein (Cas_Cas5) GCE56_12560 PF18019 HD domain GCE56_12560 PF00270 DEAD/DEAH box helicase GCE56_12560 PF00271 Helicase conserved C-terminal domain GCE56_12565 PF03611 PTS system sugar-specific permease component GCE56_12575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GCE56_12580 PF13407 Periplasmic binding protein domain GCE56_12580 PF00356 Bacterial regulatory proteins, lacI family GCE56_12585 PF00293 NUDIX domain GCE56_12590 PF02798 Glutathione S-transferase, N-terminal domain GCE56_12590 PF00043 Glutathione S-transferase, C-terminal domain GCE56_12595 PF01370 NAD dependent epimerase/dehydratase family GCE56_12595 PF08338 Domain of unknown function (DUF1731) GCE56_12600 PF02441 Flavoprotein GCE56_12605 PF00156 Phosphoribosyl transferase domain GCE56_12610 PF02674 Colicin V production protein GCE56_12615 PF05036 Sporulation related domain GCE56_12620 PF02875 Mur ligase family, glutamate ligase domain GCE56_12620 PF08245 Mur ligase middle domain GCE56_12625 PF17848 Acetyl-coA carboxylase zinc finger domain GCE56_12625 PF01039 Carboxyl transferase domain GCE56_12630 PF09335 SNARE associated Golgi protein GCE56_12635 PF01416 tRNA pseudouridine synthase GCE56_12640 PF02774 Semialdehyde dehydrogenase, dimerisation domain GCE56_12640 PF01118 Semialdehyde dehydrogenase, NAD binding domain GCE56_12645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GCE56_12645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GCE56_12645 PF11890 Domain of unknown function (DUF3410) GCE56_12650 PF12833 Helix-turn-helix domain GCE56_12655 PF00892 EamA-like transporter family GCE56_12660 PF00109 Beta-ketoacyl synthase, N-terminal domain GCE56_12660 PF02801 Beta-ketoacyl synthase, C-terminal domain GCE56_12665 PF01266 FAD dependent oxidoreductase GCE56_12665 PF05430 S-adenosyl-L-methionine-dependent methyltransferase GCE56_12670 PF00583 Acetyltransferase (GNAT) family GCE56_12680 PF08891 YfcL protein GCE56_12685 PF04315 Elongation factor P hydroxylase GCE56_12690 PF01925 Sulfite exporter TauE/SafE GCE56_12695 PF01264 Chorismate synthase GCE56_12700 PF05175 Methyltransferase small domain GCE56_12705 PF00210 Ferritin-like domain GCE56_12710 PF01713 Smr domain GCE56_12715 PF00300 Histidine phosphatase superfamily (branch 1) GCE56_12720 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GCE56_12720 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GCE56_12720 PF00378 Enoyl-CoA hydratase/isomerase GCE56_12725 PF00108 Thiolase, N-terminal domain GCE56_12725 PF02803 Thiolase, C-terminal domain GCE56_12730 PF04175 Protein of unknown function (DUF406) GCE56_12735 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) GCE56_12740 PF04333 MlaA lipoprotein GCE56_12760 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GCE56_12760 PF00384 Molybdopterin oxidoreductase GCE56_12760 PF01568 Molydopterin dinucleotide binding domain GCE56_12765 PF13247 4Fe-4S dicluster domain GCE56_12765 PF12800 4Fe-4S binding domain GCE56_12770 PF01292 Prokaryotic cytochrome b561 GCE56_12775 PF01381 Helix-turn-helix GCE56_12820 PF00749 tRNA synthetases class I (E and Q), catalytic domain GCE56_12845 PF12843 Putative quorum-sensing-regulated virulence factor GCE56_12850 PF01773 Na+ dependent nucleoside transporter N-terminus GCE56_12850 PF07662 Na+ dependent nucleoside transporter C-terminus GCE56_12850 PF07670 Nucleoside recognition GCE56_12855 PF12826 Helix-hairpin-helix motif GCE56_12855 PF03119 NAD-dependent DNA ligase C4 zinc finger domain GCE56_12855 PF03120 NAD-dependent DNA ligase OB-fold domain GCE56_12855 PF00533 BRCA1 C Terminus (BRCT) domain GCE56_12855 PF01653 NAD-dependent DNA ligase adenylation domain GCE56_12865 PF04354 ZipA, C-terminal FtsZ-binding domain GCE56_12875 PF00291 Pyridoxal-phosphate dependent enzyme GCE56_12880 PF00381 PTS HPr component phosphorylation site GCE56_12885 PF05524 PEP-utilising enzyme, N-terminal GCE56_12885 PF02896 PEP-utilising enzyme, TIM barrel domain GCE56_12885 PF00391 PEP-utilising enzyme, mobile domain GCE56_12890 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GCE56_12895 PF00291 Pyridoxal-phosphate dependent enzyme GCE56_12900 PF00005 ABC transporter GCE56_12905 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_12910 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_12920 PF04261 Dyp-type peroxidase family GCE56_12925 PF06572 Protein of unknown function (DUF1131) GCE56_12930 PF00583 Acetyltransferase (GNAT) family GCE56_12935 PF01218 Coproporphyrinogen III oxidase GCE56_12945 PF01926 50S ribosome-binding GTPase GCE56_12945 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GCE56_12950 PF13360 PQQ-like domain GCE56_12955 PF09976 Tetratricopeptide repeat-like domain GCE56_12960 PF13393 Histidyl-tRNA synthetase GCE56_12960 PF03129 Anticodon binding domain GCE56_12965 PF04551 GcpE protein GCE56_12970 PF13464 Domain of unknown function (DUF4115) GCE56_12980 PF04055 Radical SAM superfamily GCE56_12985 PF00334 Nucleoside diphosphate kinase GCE56_12990 PF06832 Penicillin-Binding Protein C-terminus Family GCE56_12990 PF00905 Penicillin binding protein transpeptidase domain GCE56_12990 PF00912 Transglycosylase GCE56_12995 PF07703 Alpha-2-macroglobulin bait region domain GCE56_12995 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain GCE56_12995 PF07678 A-macroglobulin TED domain GCE56_12995 PF01835 MG2 domain GCE56_12995 PF17962 Bacterial macroglobulin domain 6 GCE56_12995 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain GCE56_12995 PF11974 Bacterial alpha-2-macroglobulin MG3 domain GCE56_12995 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain GCE56_12995 PF00207 Alpha-2-macroglobulin family GCE56_13000 PF14581 SseB protein C-terminal domain GCE56_13000 PF07179 SseB protein N-terminal domain GCE56_13005 PF12404 Peptidase GCE56_13005 PF00883 Cytosol aminopeptidase family, catalytic domain GCE56_13010 PF04384 Iron-sulphur cluster assembly GCE56_13015 PF00111 2Fe-2S iron-sulfur cluster binding domain GCE56_13020 PF00012 Hsp70 protein GCE56_13025 PF07743 HSCB C-terminal oligomerisation domain GCE56_13025 PF00226 DnaJ domain GCE56_13030 PF01521 Iron-sulphur cluster biosynthesis GCE56_13035 PF01592 NifU-like N terminal domain GCE56_13040 PF00266 Aminotransferase class-V GCE56_13045 PF02082 Transcriptional regulator GCE56_13050 PF00588 SpoU rRNA Methylase family GCE56_13055 PF00459 Inositol monophosphatase family GCE56_13070 PF12832 MFS_1 like family GCE56_13075 PF00464 Serine hydroxymethyltransferase GCE56_13080 PF00175 Oxidoreductase NAD-binding domain GCE56_13080 PF00042 Globin GCE56_13080 PF00970 Oxidoreductase FAD-binding domain GCE56_13090 PF00543 Nitrogen regulatory protein P-II GCE56_13095 PF02540 NAD synthase GCE56_13095 PF00795 Carbon-nitrogen hydrolase GCE56_13100 PF00072 Response regulator receiver domain GCE56_13100 PF00158 Sigma-54 interaction domain GCE56_13105 PF13942 YfhG lipoprotein GCE56_13110 PF00512 His Kinase A (phospho-acceptor) domain GCE56_13110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_13115 PF02769 AIR synthase related protein, C-terminal domain GCE56_13115 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain GCE56_13115 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal GCE56_13120 PF00497 Bacterial extracellular solute-binding proteins, family 3 GCE56_13120 PF01464 Transglycosylase SLT domain GCE56_13125 PF00419 Fimbrial protein GCE56_13130 PF13953 PapC C-terminal domain GCE56_13130 PF00577 Outer membrane usher protein GCE56_13130 PF13954 PapC N-terminal domain GCE56_13135 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_13135 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_13140 PF00419 Fimbrial protein GCE56_13145 PF00419 Fimbrial protein GCE56_13150 PF14437 MafB19-like deaminase GCE56_13155 PF12838 4Fe-4S dicluster domain GCE56_13160 PF01648 4'-phosphopantetheinyl transferase superfamily GCE56_13165 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ GCE56_13170 PF02565 Recombination protein O C terminal GCE56_13170 PF11967 Recombination protein O N terminal GCE56_13175 PF07650 KH domain GCE56_13175 PF01926 50S ribosome-binding GTPase GCE56_13180 PF00035 Double-stranded RNA binding motif GCE56_13180 PF14622 Ribonuclease-III-like GCE56_13185 PF10502 Signal peptidase, peptidase S26 GCE56_13190 PF00009 Elongation factor Tu GTP binding domain GCE56_13190 PF03144 Elongation factor Tu domain 2 GCE56_13190 PF06421 GTP-binding protein LepA C-terminus GCE56_13190 PF00679 Elongation factor G C-terminus GCE56_13200 PF17188 MucB/RseB C-terminal domain GCE56_13200 PF03888 MucB/RseB N-terminal domain GCE56_13205 PF03873 Anti sigma-E protein RseA, C-terminal domain GCE56_13205 PF03872 Anti sigma-E protein RseA, N-terminal domain GCE56_13210 PF08281 Sigma-70, region 4 GCE56_13210 PF04542 Sigma-70 region 2 GCE56_13215 PF05175 Methyltransferase small domain GCE56_13220 PF00271 Helicase conserved C-terminal domain GCE56_13220 PF00270 DEAD/DEAH box helicase GCE56_13225 PF01228 Glycine radical GCE56_13235 PF03167 Uracil DNA glycosylase superfamily GCE56_13240 PF01025 GrpE GCE56_13245 PF01513 ATP-NAD kinase GCE56_13250 PF02463 RecF/RecN/SMC N terminal domain GCE56_13255 PF04355 SmpA / OmlA family GCE56_13260 PF03658 RnfH family Ubiquitin GCE56_13265 PF03364 Polyketide cyclase / dehydrase and lipid transport GCE56_13270 PF01668 SmpB protein GCE56_13290 PF01580 FtsK/SpoIIIE family GCE56_13290 PF13491 4TM region of DNA translocase FtsK/SpoIIIE GCE56_13290 PF17854 FtsK alpha domain GCE56_13290 PF09397 Ftsk gamma domain GCE56_13370 PF06039 Malate:quinone oxidoreductase (Mqo) GCE56_13385 PF02525 Flavodoxin-like fold GCE56_13390 PF02652 L-lactate permease GCE56_13395 PF02754 Cysteine-rich domain GCE56_13400 PF11870 Domain of unknown function (DUF3390) GCE56_13400 PF02589 LUD domain GCE56_13400 PF13183 4Fe-4S dicluster domain GCE56_13405 PF02589 LUD domain GCE56_13420 PF03692 Putative zinc- or iron-chelating domain GCE56_13425 PF06940 Domain of unknown function (DUF1287) GCE56_13430 PF07690 Major Facilitator Superfamily GCE56_13435 PF00756 Putative esterase GCE56_13440 PF07715 TonB-dependent Receptor Plug Domain GCE56_13440 PF00593 TonB dependent receptor GCE56_13445 PF00474 Sodium:solute symporter family GCE56_13450 PF00356 Bacterial regulatory proteins, lacI family GCE56_13455 PF01263 Aldose 1-epimerase GCE56_13460 PF00288 GHMP kinases N terminal domain GCE56_13460 PF08544 GHMP kinases C terminal GCE56_13460 PF10509 Galactokinase galactose-binding signature GCE56_13465 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain GCE56_13465 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain GCE56_13470 PF16363 GDP-mannose 4,6 dehydratase GCE56_13475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GCE56_13475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GCE56_13480 PF16916 Dimerisation domain of Zinc Transporter GCE56_13480 PF01545 Cation efflux family GCE56_13485 PF00582 Universal stress protein family GCE56_13490 PF03974 Ecotin GCE56_13495 PF04325 Protein of unknown function (DUF465) GCE56_13500 PF10678 Protein of unknown function (DUF2492) GCE56_13510 PF11756 Nitrous oxide-stimulated promoter GCE56_13515 PF13302 Acetyltransferase (GNAT) domain GCE56_13525 PF12833 Helix-turn-helix domain GCE56_13545 PF03358 NADPH-dependent FMN reductase GCE56_13565 PF00152 tRNA synthetases class II (D, K and N) GCE56_13565 PF01336 OB-fold nucleic acid binding domain GCE56_13575 PF01368 DHH family GCE56_13575 PF02272 DHHA1 domain GCE56_13575 PF17768 RecJ OB domain GCE56_13580 PF13098 Thioredoxin-like domain GCE56_13580 PF10411 Disulfide bond isomerase protein N-terminus GCE56_13585 PF00589 Phage integrase family GCE56_13585 PF02899 Phage integrase, N-terminal SAM-like domain GCE56_13590 PF00258 Flavodoxin GCE56_13595 PF07254 Membrane-bound toxin component of toxin-antitoxin system GCE56_13605 PF03937 Flavinator of succinate dehydrogenase GCE56_13610 PF01571 Aminomethyltransferase folate-binding domain GCE56_13620 PF02347 Glycine cleavage system P-protein GCE56_13625 PF01597 Glycine cleavage H-protein GCE56_13630 PF01571 Aminomethyltransferase folate-binding domain GCE56_13630 PF08669 Glycine cleavage T-protein C-terminal barrel domain GCE56_13635 PF01494 FAD binding domain GCE56_13640 PF01494 FAD binding domain GCE56_13645 PF00557 Metallopeptidase family M24 GCE56_13645 PF05195 Aminopeptidase P, N-terminal domain GCE56_13650 PF03695 Uncharacterised protein family (UPF0149) GCE56_13655 PF05164 Cell division protein ZapA GCE56_13665 PF01812 5-formyltetrahydrofolate cyclo-ligase family GCE56_13670 PF03412 Peptidase C39 family GCE56_13670 PF00005 ABC transporter GCE56_13670 PF00664 ABC transporter transmembrane region GCE56_13680 PF00664 ABC transporter transmembrane region GCE56_13680 PF00005 ABC transporter GCE56_13680 PF03412 Peptidase C39 family GCE56_13685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GCE56_13685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GCE56_13685 PF01842 ACT domain GCE56_13690 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) GCE56_13695 PF03466 LysR substrate binding domain GCE56_13695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_13710 PF04402 Protein of unknown function (DUF541) GCE56_13715 PF01810 LysE type translocator GCE56_13720 PF05552 Conserved TM helix GCE56_13720 PF00924 Mechanosensitive ion channel GCE56_13725 PF06062 Uncharacterised protein family (UPF0231) GCE56_13730 PF00330 Aconitase family (aconitate hydratase) GCE56_13730 PF06434 Aconitate hydratase 2 N-terminus GCE56_13730 PF11791 Aconitate B N-terminal domain GCE56_13745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GCE56_13745 PF07992 Pyridine nucleotide-disulphide oxidoreductase GCE56_13750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GCE56_13750 PF00364 Biotin-requiring enzyme GCE56_13750 PF02817 e3 binding domain GCE56_13755 PF17831 Pyruvate dehydrogenase E1 component middle domain GCE56_13755 PF00456 Transketolase, thiamine diphosphate binding domain GCE56_13760 PF00392 Bacterial regulatory proteins, gntR family GCE56_13760 PF07729 FCD domain GCE56_13765 PF01510 N-acetylmuramoyl-L-alanine amidase GCE56_13770 PF07963 Prokaryotic N-terminal methylation motif GCE56_13775 PF00437 Type II/IV secretion system protein GCE56_13775 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain GCE56_13780 PF00482 Type II secretion system (T2SS), protein F GCE56_13785 PF01121 Dephospho-CoA kinase GCE56_13790 PF07072 Cell division protein GCE56_13795 PF03884 DNA gyrase inhibitor YacG GCE56_13800 PF00293 NUDIX domain GCE56_13805 PF17287 POTRA domain GCE56_13805 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB GCE56_13805 PF08479 POTRA domain, ShlB-type GCE56_13810 PF05860 haemagglutination activity domain GCE56_13810 PF13332 Hemagglutinin repeat GCE56_13815 PF00403 Heavy-metal-associated domain GCE56_13820 PF00376 MerR family regulatory protein GCE56_13820 PF09278 MerR, DNA binding GCE56_13825 PF07516 SecA Wing and Scaffold domain GCE56_13825 PF01043 SecA preprotein cross-linking domain GCE56_13825 PF07517 SecA DEAD-like domain GCE56_13825 PF02810 SEC-C motif GCE56_13830 PF06558 Secretion monitor precursor protein (SecM) GCE56_13840 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase GCE56_13845 PF12327 FtsZ family, C-terminal domain GCE56_13845 PF00091 Tubulin/FtsZ family, GTPase domain GCE56_13850 PF02491 SHS2 domain inserted in FTSA GCE56_13855 PF03799 Cell division protein FtsQ GCE56_13855 PF08478 POTRA domain, FtsQ-type GCE56_13865 PF01225 Mur ligase family, catalytic domain GCE56_13865 PF02875 Mur ligase family, glutamate ligase domain GCE56_13865 PF08245 Mur ligase middle domain GCE56_13870 PF04101 Glycosyltransferase family 28 C-terminal domain GCE56_13870 PF03033 Glycosyltransferase family 28 N-terminal domain GCE56_13875 PF01098 Cell cycle protein GCE56_13880 PF08245 Mur ligase middle domain GCE56_13880 PF02875 Mur ligase family, glutamate ligase domain GCE56_13885 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 GCE56_13885 PF00953 Glycosyl transferase family 4 GCE56_13890 PF08245 Mur ligase middle domain GCE56_13890 PF01225 Mur ligase family, catalytic domain GCE56_13890 PF02875 Mur ligase family, glutamate ligase domain GCE56_13895 PF02875 Mur ligase family, glutamate ligase domain GCE56_13895 PF08245 Mur ligase middle domain GCE56_13895 PF01225 Mur ligase family, catalytic domain GCE56_13900 PF00905 Penicillin binding protein transpeptidase domain GCE56_13900 PF03717 Penicillin-binding Protein dimerisation domain GCE56_13905 PF04999 Cell division protein FtsL GCE56_13910 PF01795 MraW methylase family GCE56_13915 PF02381 MraZ protein, putative antitoxin-like GCE56_13920 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GCE56_13920 PF00356 Bacterial regulatory proteins, lacI family GCE56_13925 PF00501 AMP-binding enzyme GCE56_13930 PF03466 LysR substrate binding domain GCE56_13930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_13940 PF08502 LeuA allosteric (dimerisation) domain GCE56_13940 PF00682 HMGL-like GCE56_13945 PF00180 Isocitrate/isopropylmalate dehydrogenase GCE56_13950 PF00330 Aconitase family (aconitate hydratase) GCE56_13955 PF00694 Aconitase C-terminal domain GCE56_13960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GCE56_13960 PF12793 Sugar transport-related sRNA regulator N-term GCE56_13965 PF02976 DNA mismatch repair enzyme MutH GCE56_13975 PF05973 Phage derived protein Gp49-like (DUF891) GCE56_13980 PF00106 short chain dehydrogenase GCE56_13985 PF00491 Arginase family GCE56_13990 PF17810 Arginine decarboxylase helical bundle domain GCE56_13990 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GCE56_13990 PF17944 Arginine decarboxylase C-terminal helical extension GCE56_13995 PF00438 S-adenosylmethionine synthetase, N-terminal domain GCE56_13995 PF02772 S-adenosylmethionine synthetase, central domain GCE56_13995 PF02773 S-adenosylmethionine synthetase, C-terminal domain GCE56_14000 PF11658 Cellulose biosynthesis protein BcsG GCE56_14010 PF06564 Cellulose biosynthesis protein BcsQ GCE56_14015 PF00535 Glycosyl transferase family 2 GCE56_14015 PF07238 PilZ domain GCE56_14020 PF03170 Bacterial cellulose synthase subunit GCE56_14025 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) GCE56_14035 PF04143 Sulphur transport GCE56_14045 PF17283 SprT-like zinc ribbon domain GCE56_14045 PF10263 SprT-like family GCE56_14050 PF00571 CBS domain GCE56_14050 PF01769 Divalent cation transporter GCE56_14050 PF03448 MgtE intracellular N domain GCE56_14060 PF00111 2Fe-2S iron-sulfur cluster binding domain GCE56_14060 PF00175 Oxidoreductase NAD-binding domain GCE56_14060 PF00970 Oxidoreductase FAD-binding domain GCE56_14065 PF03063 Prismane/CO dehydrogenase family GCE56_14070 PF00171 Aldehyde dehydrogenase family GCE56_14075 PF01235 Sodium:alanine symporter family GCE56_14080 PF00654 Voltage gated chloride channel GCE56_14085 PF09313 Domain of unknown function (DUF1971) GCE56_14085 PF03848 Tellurite resistance protein TehB GCE56_14090 PF02254 TrkA-N domain GCE56_14090 PF07885 Ion channel GCE56_14095 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family GCE56_14100 PF04264 YceI-like domain GCE56_14105 PF01292 Prokaryotic cytochrome b561 GCE56_14120 PF05662 Coiled stalk of trimeric autotransporter adhesin GCE56_14120 PF13018 Extended Signal Peptide of Type V secretion system GCE56_14120 PF03895 YadA-like membrane anchor domain GCE56_14120 PF05658 Head domain of trimeric autotransporter adhesin GCE56_14130 PF00884 Sulfatase GCE56_14145 PF09092 Lyase, N terminal GCE56_14145 PF02278 Polysaccharide lyase family 8, super-sandwich domain GCE56_14145 PF09093 Lyase, catalytic GCE56_14145 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain GCE56_14150 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain GCE56_14150 PF02278 Polysaccharide lyase family 8, super-sandwich domain GCE56_14150 PF09093 Lyase, catalytic GCE56_14150 PF09092 Lyase, N terminal GCE56_14170 PF07470 Glycosyl Hydrolase Family 88 GCE56_14180 PF04962 KduI/IolB family GCE56_14185 PF01979 Amidohydrolase family GCE56_14190 PF03830 PTS system sorbose subfamily IIB component GCE56_14190 PF03610 PTS system fructose IIA component GCE56_14195 PF03613 PTS system mannose/fructose/sorbose family IID component GCE56_14200 PF03609 PTS system sorbose-specific iic component GCE56_14205 PF03830 PTS system sorbose subfamily IIB component GCE56_14210 PF01380 SIS domain GCE56_14215 PF08013 Tagatose 6 phosphate kinase GCE56_14220 PF08220 DeoR-like helix-turn-helix domain GCE56_14220 PF00455 DeoR C terminal sensor domain GCE56_14225 PF13186 Iron-sulfur cluster-binding domain GCE56_14225 PF04055 Radical SAM superfamily GCE56_14230 PF00884 Sulfatase GCE56_14240 PF01116 Fructose-bisphosphate aldolase class-II GCE56_14245 PF00294 pfkB family carbohydrate kinase GCE56_14250 PF01081 KDPG and KHG aldolase GCE56_14260 PF01266 FAD dependent oxidoreductase GCE56_14270 PF02567 Phenazine biosynthesis-like protein GCE56_14275 PF02040 Arsenical pump membrane protein GCE56_14280 PF01022 Bacterial regulatory protein, arsR family GCE56_14285 PF04229 GrpB protein GCE56_14425 PF10548 P22AR C-terminal domain GCE56_14425 PF08346 AntA/AntB antirepressor GCE56_14440 PF00589 Phage integrase family GCE56_14440 PF14659 Phage integrase, N-terminal SAM-like domain GCE56_14440 PF13356 Arm DNA-binding domain GCE56_14445 PF06440 DNA polymerase III, theta subunit GCE56_14450 PF01757 Acyltransferase family GCE56_14645 PF05866 Endodeoxyribonuclease RusA GCE56_14650 PF07102 Protein of unknown function (DUF1364) GCE56_14675 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GCE56_14675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GCE56_14685 PF04381 Putative exonuclease, RdgC GCE56_14700 PF03374 Phage antirepressor protein KilAC domain GCE56_14700 PF09669 Phage regulatory protein Rha (Phage_pRha) GCE56_14775 PF00436 Single-strand binding protein family GCE56_14815 PF00589 Phage integrase family GCE56_14825 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GCE56_14825 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GCE56_14835 PF00294 pfkB family carbohydrate kinase GCE56_14840 PF01406 tRNA synthetases class I (C) catalytic domain GCE56_14840 PF09190 DALR domain GCE56_14845 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GCE56_14850 PF00149 Calcineurin-like phosphoesterase GCE56_14855 PF00731 AIR carboxylase GCE56_14860 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain GCE56_14860 PF02222 ATP-grasp domain GCE56_14870 PF00924 Mechanosensitive ion channel GCE56_14880 PF00005 ABC transporter GCE56_14885 PF13472 GDSL-like Lipase/Acylhydrolase family GCE56_14890 PF00106 short chain dehydrogenase GCE56_14895 PF00085 Thioredoxin GCE56_14900 PF01145 SPFH domain / Band 7 family GCE56_14900 PF16200 C-terminal region of band_7 GCE56_14910 PF13411 MerR HTH family regulatory protein GCE56_14915 PF00403 Heavy-metal-associated domain GCE56_14925 PF01963 TraB family GCE56_14930 PF04073 Aminoacyl-tRNA editing domain GCE56_14935 PF00149 Calcineurin-like phosphoesterase GCE56_14935 PF02872 5'-nucleotidase, C-terminal domain GCE56_14940 PF00999 Sodium/hydrogen exchanger family GCE56_14940 PF02254 TrkA-N domain GCE56_14945 PF00294 pfkB family carbohydrate kinase GCE56_14950 PF02706 Chain length determinant protein GCE56_14955 PF00762 Ferrochelatase GCE56_14960 PF05191 Adenylate kinase, active site lid GCE56_14965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_14965 PF00183 Hsp90 protein GCE56_14970 PF02222 ATP-grasp domain GCE56_14975 PF00892 EamA-like transporter family GCE56_14980 PF00294 pfkB family carbohydrate kinase GCE56_14985 PF00251 Glycosyl hydrolases family 32 N-terminal domain GCE56_14985 PF08244 Glycosyl hydrolases family 32 C terminal GCE56_14990 PF00356 Bacterial regulatory proteins, lacI family GCE56_14990 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GCE56_14995 PF00072 Response regulator receiver domain GCE56_14995 PF00196 Bacterial regulatory proteins, luxR family GCE56_15020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_15020 PF03466 LysR substrate binding domain GCE56_15030 PF00696 Amino acid kinase family GCE56_15035 PF11392 Protein of unknown function (DUF2877) GCE56_15040 PF06545 Protein of unknown function (DUF1116) GCE56_15045 PF00549 CoA-ligase GCE56_15045 PF02629 CoA binding domain GCE56_15050 PF00857 Isochorismatase family GCE56_15055 PF05726 Pirin C-terminal cupin domain GCE56_15055 PF02678 Pirin GCE56_15060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_15060 PF03466 LysR substrate binding domain GCE56_15065 PF00939 Sodium:sulfate symporter transmembrane region GCE56_15095 PF00577 Outer membrane usher protein GCE56_15095 PF13953 PapC C-terminal domain GCE56_15095 PF13954 PapC N-terminal domain GCE56_15100 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_15100 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_15105 PF00419 Fimbrial protein GCE56_15125 PF00419 Fimbrial protein GCE56_15135 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_15135 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_15140 PF13953 PapC C-terminal domain GCE56_15140 PF13954 PapC N-terminal domain GCE56_15140 PF00577 Outer membrane usher protein GCE56_15150 PF00419 Fimbrial protein GCE56_15155 PF01381 Helix-turn-helix GCE56_15160 PF02811 PHP domain GCE56_15165 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GCE56_15165 PF00367 phosphotransferase system, EIIB GCE56_15165 PF02378 Phosphotransferase system, EIIC GCE56_15170 PF03123 CAT RNA binding domain GCE56_15170 PF00874 PRD domain GCE56_15175 PF13673 Acetyltransferase (GNAT) domain GCE56_15180 PF02661 Fic/DOC family GCE56_15210 PF05192 MutS domain III GCE56_15210 PF05190 MutS family domain IV GCE56_15210 PF00488 MutS domain V GCE56_15210 PF01624 MutS domain I GCE56_15210 PF05188 MutS domain II GCE56_15215 PF00140 Sigma-70 factor, region 1.2 GCE56_15215 PF04542 Sigma-70 region 2 GCE56_15215 PF04545 Sigma-70, region 4 GCE56_15215 PF04539 Sigma-70 region 3 GCE56_15220 PF01551 Peptidase family M23 GCE56_15220 PF01476 LysM domain GCE56_15230 PF01975 Survival protein SurE GCE56_15235 PF01142 tRNA pseudouridine synthase D (TruD) GCE56_15240 PF02542 YgbB family GCE56_15245 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GCE56_15250 PF04977 Septum formation initiator GCE56_15260 PF00009 Elongation factor Tu GTP binding domain GCE56_15265 PF01507 Phosphoadenosine phosphosulfate reductase family GCE56_15270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GCE56_15270 PF10414 Sirohaem synthase dimerisation region GCE56_15270 PF14824 Sirohaem biosynthesis protein central GCE56_15275 PF01507 Phosphoadenosine phosphosulfate reductase family GCE56_15280 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GCE56_15280 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GCE56_15285 PF00258 Flavodoxin GCE56_15285 PF00175 Oxidoreductase NAD-binding domain GCE56_15285 PF00667 FAD binding domain GCE56_15290 PF01242 6-pyruvoyl tetrahydropterin synthase GCE56_15295 PF04055 Radical SAM superfamily GCE56_15300 PF00324 Amino acid permease GCE56_15305 PF01053 Cys/Met metabolism PLP-dependent enzyme GCE56_15320 PF03372 Endonuclease/Exonuclease/phosphatase family GCE56_15355 PF09383 NIL domain GCE56_15355 PF00005 ABC transporter GCE56_15360 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_15365 PF03180 NLPA lipoprotein GCE56_15375 PF18389 TrmO C-terminal domain GCE56_15375 PF01980 tRNA-methyltransferase O GCE56_15380 PF04073 Aminoacyl-tRNA editing domain GCE56_15380 PF03129 Anticodon binding domain GCE56_15380 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GCE56_15385 PF17185 NlpE C-terminal OB domain GCE56_15385 PF04170 NlpE N-terminal domain GCE56_15390 PF07073 Modulator of Rho-dependent transcription termination (ROF) GCE56_15395 PF01171 PP-loop family GCE56_15395 PF09179 TilS substrate binding domain GCE56_15395 PF11734 TilS substrate C-terminal domain GCE56_15405 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit GCE56_15410 PF14579 Helix-hairpin-helix motif GCE56_15410 PF07733 Bacterial DNA polymerase III alpha NTPase domain GCE56_15410 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GCE56_15410 PF01336 OB-fold nucleic acid binding domain GCE56_15410 PF02811 PHP domain GCE56_15415 PF01351 Ribonuclease HII GCE56_15420 PF02684 Lipid-A-disaccharide synthetase GCE56_15425 PF00132 Bacterial transferase hexapeptide (six repeats) GCE56_15425 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 GCE56_15430 PF07977 FabA-like domain GCE56_15435 PF00132 Bacterial transferase hexapeptide (six repeats) GCE56_15435 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD GCE56_15440 PF03938 Outer membrane protein (OmpH-like) GCE56_15445 PF07244 Surface antigen variable number repeat GCE56_15445 PF01103 Surface antigen GCE56_15450 PF02163 Peptidase family M50 GCE56_15450 PF17820 PDZ domain GCE56_15460 PF01255 Putative undecaprenyl diphosphate synthase GCE56_15465 PF13288 DXP reductoisomerase C-terminal domain GCE56_15465 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase GCE56_15465 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain GCE56_15470 PF01765 Ribosome recycling factor GCE56_15475 PF00696 Amino acid kinase family GCE56_15480 PF00889 Elongation factor TS GCE56_15485 PF00318 Ribosomal protein S2 GCE56_15490 PF00557 Metallopeptidase family M24 GCE56_15495 PF01842 ACT domain GCE56_15495 PF01966 HD domain GCE56_15495 PF08335 GlnD PII-uridylyltransferase GCE56_15500 PF14602 Hexapeptide repeat of succinyl-transferase GCE56_15500 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal GCE56_15505 PF11944 Protein of unknown function (DUF3461) GCE56_15510 PF00258 Flavodoxin GCE56_15525 PF02378 Phosphotransferase system, EIIC GCE56_15525 PF00367 phosphotransferase system, EIIB GCE56_15530 PF04287 tRNA pseudouridine synthase C GCE56_15530 PF00849 RNA pseudouridylate synthase GCE56_15535 PF04287 tRNA pseudouridine synthase C GCE56_15540 PF07348 Syd protein (SUKH-2) GCE56_15545 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term GCE56_15545 PF14489 QueF-like protein GCE56_15550 PF11892 Domain of unknown function (DUF3412) GCE56_15550 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases GCE56_15550 PF03641 Possible lysine decarboxylase GCE56_15555 PF01367 5'-3' exonuclease, C-terminal SAM fold GCE56_15555 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GCE56_15560 PF18125 RlmM ferredoxin-like domain GCE56_15560 PF01728 FtsJ-like methyltransferase GCE56_15565 PF04241 Protein of unknown function (DUF423) GCE56_15570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_15570 PF03466 LysR substrate binding domain GCE56_15575 PF00266 Aminotransferase class-V GCE56_15580 PF02657 Fe-S metabolism associated domain GCE56_15585 PF00899 ThiF family GCE56_15590 PF06725 3D domain GCE56_15590 PF03562 MltA specific insert domain GCE56_15610 PF01520 N-acetylmuramoyl-L-alanine amidase GCE56_15610 PF11741 AMIN domain GCE56_15615 PF00583 Acetyltransferase (GNAT) family GCE56_15615 PF00696 Amino acid kinase family GCE56_15620 PF13538 UvrD-like helicase C-terminal domain GCE56_15625 PF00580 UvrD/REP helicase N-terminal domain GCE56_15625 PF13361 UvrD-like helicase C-terminal domain GCE56_15625 PF12705 PD-(D/E)XK nuclease superfamily GCE56_15630 PF00675 Insulinase (Peptidase family M16) GCE56_15630 PF05193 Peptidase M16 inactive domain GCE56_15630 PF16187 Middle or third domain of peptidase_M16 GCE56_15635 PF17946 RecC C-terminal domain GCE56_15670 PF01790 Prolipoprotein diacylglyceryl transferase GCE56_15675 PF05524 PEP-utilising enzyme, N-terminal GCE56_15675 PF00391 PEP-utilising enzyme, mobile domain GCE56_15675 PF01590 GAF domain GCE56_15675 PF02896 PEP-utilising enzyme, TIM barrel domain GCE56_15680 PF00293 NUDIX domain GCE56_15690 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_15695 PF00005 ABC transporter GCE56_15700 PF12728 Helix-turn-helix domain GCE56_15710 PF00136 DNA polymerase family B GCE56_15710 PF03104 DNA polymerase family B, exonuclease domain GCE56_15715 PF00176 SNF2 family N-terminal domain GCE56_15715 PF00271 Helicase conserved C-terminal domain GCE56_15715 PF18339 RapA N-terminal Tudor like domain 1 GCE56_15715 PF12137 RNA polymerase recycling family C-terminal GCE56_15715 PF18337 RapA N-terminal Tudor like domain GCE56_15720 PF00849 RNA pseudouridylate synthase GCE56_15725 PF00226 DnaJ domain GCE56_15725 PF05099 Tellurite resistance protein TerB GCE56_15730 PF04453 LPS transport system D GCE56_15730 PF03968 OstA-like protein GCE56_15735 PF09312 SurA N-terminal domain GCE56_15740 PF04166 Pyridoxal phosphate biosynthetic protein PdxA GCE56_15745 PF00398 Ribosomal RNA adenine dimethylase GCE56_15750 PF04379 ApaG domain GCE56_15755 PF00149 Calcineurin-like phosphoesterase GCE56_15760 PF00186 Dihydrofolate reductase GCE56_15770 PF00082 Subtilase family GCE56_15770 PF12951 Passenger-associated-transport-repeat GCE56_15770 PF03797 Autotransporter beta-domain GCE56_15775 PF07731 Multicopper oxidase GCE56_15775 PF07732 Multicopper oxidase GCE56_15780 PF01553 Acyltransferase GCE56_15785 PF00521 DNA gyrase/topoisomerase IV, subunit A GCE56_15785 PF03989 DNA gyrase C-terminal domain, beta-propeller GCE56_15790 PF00204 DNA gyrase B GCE56_15790 PF01751 Toprim domain GCE56_15790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_15790 PF00986 DNA gyrase B subunit, carboxyl terminus GCE56_15795 PF05728 Uncharacterised protein family (UPF0227) GCE56_15800 PF00149 Calcineurin-like phosphoesterase GCE56_15805 PF00293 NUDIX domain GCE56_15810 PF02321 Outer membrane efflux protein GCE56_15815 PF06693 Protein of unknown function (DUF1190) GCE56_15820 PF03738 Glutathionylspermidine synthase preATP-grasp GCE56_15825 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase GCE56_15830 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase GCE56_15835 PF04380 Membrane fusogenic activity GCE56_15850 PF01467 Cytidylyltransferase-like GCE56_15850 PF00294 pfkB family carbohydrate kinase GCE56_15855 PF08335 GlnD PII-uridylyltransferase GCE56_15855 PF03710 Glutamate-ammonia ligase adenylyltransferase GCE56_15860 PF01928 CYTH domain GCE56_15865 PF08239 Bacterial SH3 domain GCE56_15870 PF12627 Probable RNA and SrmB- binding site of polymerase A GCE56_15870 PF01966 HD domain GCE56_15870 PF01743 Poly A polymerase head domain GCE56_15875 PF02152 Dihydroneopterin aldolase GCE56_15880 PF02660 Glycerol-3-phosphate acyltransferase GCE56_15900 PF01474 Class-II DAHP synthetase family GCE56_15905 PF00814 Glycoprotease family GCE56_15910 PF01165 Ribosomal protein S21 GCE56_15915 PF08278 DNA primase DnaG DnaB-binding GCE56_15915 PF08275 DNA primase catalytic core, N-terminal domain GCE56_15915 PF01807 CHC2 zinc finger GCE56_15915 PF10410 DnaB-helicase binding domain of primase GCE56_15920 PF00140 Sigma-70 factor, region 1.2 GCE56_15920 PF04546 Sigma-70, non-essential region GCE56_15920 PF03979 Sigma-70 factor, region 1.1 GCE56_15920 PF04542 Sigma-70 region 2 GCE56_15920 PF04545 Sigma-70, region 4 GCE56_15920 PF04539 Sigma-70 region 3 GCE56_15945 PF06508 Queuosine biosynthesis protein QueC GCE56_15965 PF01527 Transposase GCE56_15970 PF01062 Bestrophin, RFP-TM, chloride channel GCE56_15980 PF02322 Cytochrome bd terminal oxidase subunit II GCE56_15985 PF01654 Cytochrome bd terminal oxidase subunit I GCE56_15990 PF00384 Molybdopterin oxidoreductase GCE56_15995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_15995 PF03466 LysR substrate binding domain GCE56_16000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GCE56_16000 PF02203 Tar ligand binding domain homologue GCE56_16000 PF00672 HAMP domain GCE56_16005 PF00672 HAMP domain GCE56_16005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GCE56_16005 PF02203 Tar ligand binding domain homologue GCE56_16015 PF02342 TerD domain GCE56_16020 PF02342 TerD domain GCE56_16025 PF03741 Integral membrane protein TerC family GCE56_16030 PF05099 Tellurite resistance protein TerB GCE56_16035 PF02342 TerD domain GCE56_16040 PF02342 TerD domain GCE56_16055 PF11202 Phosphoribosyl transferase (PRTase) GCE56_16055 PF15608 PELOTA RNA binding domain GCE56_16090 PF02909 Tetracyclin repressor-like, C-terminal domain GCE56_16090 PF00440 Bacterial regulatory proteins, tetR family GCE56_16095 PF07690 Major Facilitator Superfamily GCE56_16110 PF02733 Dak1 domain GCE56_16115 PF02734 DAK2 domain GCE56_16120 PF03610 PTS system fructose IIA component GCE56_16120 PF05524 PEP-utilising enzyme, N-terminal GCE56_16120 PF00391 PEP-utilising enzyme, mobile domain GCE56_16120 PF00381 PTS HPr component phosphorylation site GCE56_16125 PF02954 Bacterial regulatory protein, Fis family GCE56_16125 PF00072 Response regulator receiver domain GCE56_16125 PF14532 Sigma-54 interaction domain GCE56_16130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_16130 PF00512 His Kinase A (phospho-acceptor) domain GCE56_16130 PF02743 Cache domain GCE56_16140 PF07690 Major Facilitator Superfamily GCE56_16145 PF02887 Pyruvate kinase, alpha/beta domain GCE56_16145 PF00224 Pyruvate kinase, barrel domain GCE56_16150 PF01258 Prokaryotic dksA/traR C4-type zinc finger GCE56_16155 PF00282 Pyridoxal-dependent decarboxylase conserved domain GCE56_16160 PF03600 Citrate transporter GCE56_16165 PF01048 Phosphorylase superfamily GCE56_16170 PF01676 Metalloenzyme superfamily GCE56_16175 PF00591 Glycosyl transferase family, a/b domain GCE56_16175 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain GCE56_16175 PF02885 Glycosyl transferase family, helical bundle domain GCE56_16180 PF01791 DeoC/LacD family aldolase GCE56_16185 PF07662 Na+ dependent nucleoside transporter C-terminus GCE56_16185 PF07670 Nucleoside recognition GCE56_16185 PF01773 Na+ dependent nucleoside transporter N-terminus GCE56_16190 PF01026 TatD related DNase GCE56_16195 PF01734 Patatin-like phospholipase GCE56_16205 PF00009 Elongation factor Tu GTP binding domain GCE56_16205 PF03144 Elongation factor Tu domain 2 GCE56_16205 PF16658 Class II release factor RF3, C-terminal domain GCE56_16210 PF01381 Helix-turn-helix GCE56_16210 PF00717 Peptidase S24-like GCE56_16255 PF06122 Conjugative relaxosome accessory transposon protein GCE56_16270 PF07728 AAA domain (dynein-related subfamily) GCE56_16270 PF12102 Domain of unknown function (DUF3578) GCE56_16290 PF04002 RadC-like JAB domain GCE56_16295 PF00092 von Willebrand factor type A domain GCE56_16315 PF08406 CbbQ/NirQ/NorQ C-terminal GCE56_16315 PF07728 AAA domain (dynein-related subfamily) GCE56_16330 PF00436 Single-strand binding protein family GCE56_16355 PF06986 Type-1V conjugative transfer system mating pair stabilisation GCE56_16360 PF06834 TraU protein GCE56_16370 PF10502 Signal peptidase, peptidase S26 GCE56_16385 PF13098 Thioredoxin-like domain GCE56_16385 PF10411 Disulfide bond isomerase protein N-terminus GCE56_16515 PF01278 Omptin family GCE56_16535 PF12704 MacB-like periplasmic core domain GCE56_16535 PF02687 FtsX-like permease family GCE56_16540 PF04151 Bacterial pre-peptidase C-terminal domain GCE56_16545 PF07332 Putative Actinobacterial Holin-X, holin superfamily III GCE56_16565 PF05973 Phage derived protein Gp49-like (DUF891) GCE56_16575 PF17375 Family of unknown function (DUF5397) GCE56_16580 PF09827 CRISPR associated protein Cas2 GCE56_16590 PF05662 Coiled stalk of trimeric autotransporter adhesin GCE56_16590 PF05658 Head domain of trimeric autotransporter adhesin GCE56_16590 PF03895 YadA-like membrane anchor domain GCE56_16590 PF13018 Extended Signal Peptide of Type V secretion system GCE56_16610 PF13614 AAA domain GCE56_16655 PF14579 Helix-hairpin-helix motif GCE56_16655 PF02811 PHP domain GCE56_16655 PF00929 Exonuclease GCE56_16655 PF07733 Bacterial DNA polymerase III alpha NTPase domain GCE56_16655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GCE56_16655 PF11490 DNA polymerase III polC-type N-terminus II GCE56_16660 PF00717 Peptidase S24-like GCE56_16665 PF00817 impB/mucB/samB family GCE56_16665 PF11799 impB/mucB/samB family C-terminal domain GCE56_16665 PF13438 Domain of unknown function (DUF4113) GCE56_16695 PF07804 HipA-like C-terminal domain GCE56_16695 PF13657 HipA N-terminal domain GCE56_16700 PF01381 Helix-turn-helix GCE56_16705 PF03144 Elongation factor Tu domain 2 GCE56_16705 PF00009 Elongation factor Tu GTP binding domain GCE56_16705 PF16658 Class II release factor RF3, C-terminal domain GCE56_16720 PF00583 Acetyltransferase (GNAT) family GCE56_16730 PF08468 Methyltransferase small domain N-terminal GCE56_16730 PF05175 Methyltransferase small domain GCE56_16745 PF02690 Na+/Pi-cotransporter GCE56_16750 PF00245 Alkaline phosphatase GCE56_16755 PF07282 Putative transposase DNA-binding domain GCE56_16755 PF01385 Probable transposase GCE56_16755 PF12323 Helix-turn-helix domain GCE56_16760 PF01797 Transposase IS200 like GCE56_16765 PF00756 Putative esterase GCE56_16765 PF11806 Domain of unknown function (DUF3327) GCE56_16775 PF01381 Helix-turn-helix GCE56_16775 PF13521 AAA domain GCE56_16780 PF18073 Rubredoxin metal binding domain GCE56_16785 PF18429 Domain of unknown function (DUF5609) GCE56_16790 PF10144 Bacterial virulence factor haemolysin GCE56_16795 PF11230 Protein of unknown function (DUF3029) GCE56_16800 PF04055 Radical SAM superfamily GCE56_16810 PF00005 ABC transporter GCE56_16815 PF00005 ABC transporter GCE56_16820 PF12911 N-terminal TM domain of oligopeptide transport permease C GCE56_16820 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_16825 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_16830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GCE56_16835 PF00535 Glycosyl transferase family 2 GCE56_16840 PF01750 Hydrogenase maturation protease GCE56_16845 PF07450 Formate hydrogenlyase maturation protein HycH GCE56_16850 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit GCE56_16855 PF12838 4Fe-4S dicluster domain GCE56_16860 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit GCE56_16860 PF00374 Nickel-dependent hydrogenase GCE56_16860 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit GCE56_16865 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GCE56_16865 PF00361 Proton-conducting membrane transporter GCE56_16870 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L GCE56_16875 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GCE56_16875 PF00361 Proton-conducting membrane transporter GCE56_16880 PF00146 NADH dehydrogenase GCE56_16885 PF00361 Proton-conducting membrane transporter GCE56_16890 PF12798 4Fe-4S binding domain GCE56_16890 PF00037 4Fe-4S binding domain GCE56_16895 PF02502 Ribose/Galactose Isomerase GCE56_16900 PF01132 Elongation factor P (EF-P) OB domain GCE56_16900 PF08207 Elongation factor P (EF-P) KOW-like domain GCE56_16900 PF09285 Elongation factor P, C-terminal GCE56_16905 PF04055 Radical SAM superfamily GCE56_16915 PF13954 PapC N-terminal domain GCE56_16915 PF00577 Outer membrane usher protein GCE56_16915 PF13953 PapC C-terminal domain GCE56_16920 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_16920 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_16925 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_16925 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_16940 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_16940 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_16950 PF13460 NAD(P)H-binding GCE56_16955 PF13698 Domain of unknown function (DUF4156) GCE56_16965 PF00118 TCP-1/cpn60 chaperonin family GCE56_16970 PF00166 Chaperonin 10 Kd subunit GCE56_16975 PF04186 FxsA cytoplasmic membrane protein GCE56_16980 PF00206 Lyase GCE56_16980 PF10415 Fumarase C C-terminus GCE56_16985 PF03605 Anaerobic c4-dicarboxylate membrane transporter GCE56_17000 PF02899 Phage integrase, N-terminal SAM-like domain GCE56_17000 PF00589 Phage integrase family GCE56_17215 PF07715 TonB-dependent Receptor Plug Domain GCE56_17215 PF00593 TonB dependent receptor GCE56_17220 PF07690 Major Facilitator Superfamily GCE56_17230 PF00668 Condensation domain GCE56_17230 PF08242 Methyltransferase domain GCE56_17230 PF00550 Phosphopantetheine attachment site GCE56_17230 PF00501 AMP-binding enzyme GCE56_17235 PF00109 Beta-ketoacyl synthase, N-terminal domain GCE56_17235 PF00550 Phosphopantetheine attachment site GCE56_17235 PF00668 Condensation domain GCE56_17235 PF16197 Ketoacyl-synthetase C-terminal extension GCE56_17235 PF02801 Beta-ketoacyl synthase, C-terminal domain GCE56_17235 PF00698 Acyl transferase domain GCE56_17245 PF00975 Thioesterase domain GCE56_17250 PF00005 ABC transporter GCE56_17250 PF00664 ABC transporter transmembrane region GCE56_17255 PF00005 ABC transporter GCE56_17255 PF00664 ABC transporter transmembrane region GCE56_17260 PF01648 4'-phosphopantetheinyl transferase superfamily GCE56_17305 PF00593 TonB dependent receptor GCE56_17305 PF07715 TonB-dependent Receptor Plug Domain GCE56_17320 PF04224 Protein of unknown function, DUF417 GCE56_17335 PF16970 Type-1 fimbrial protein, A GCE56_17345 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain GCE56_17345 PF01276 Orn/Lys/Arg decarboxylase, major domain GCE56_17345 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain GCE56_17360 PF04754 Putative transposase, YhgA-like GCE56_17380 PF01751 Toprim domain GCE56_17380 PF01131 DNA topoisomerase GCE56_17430 PF03796 DnaB-like helicase C terminal domain GCE56_17430 PF00772 DnaB-like helicase N terminal domain GCE56_17440 PF13614 AAA domain GCE56_17450 PF04536 TPM domain GCE56_17455 PF04011 LemA family GCE56_17470 PF17864 RuvB AAA lid domain GCE56_17470 PF05496 Holliday junction DNA helicase RuvB P-loop domain GCE56_17470 PF05491 RuvB C-terminal winged helix domain GCE56_17475 PF02311 AraC-like ligand binding domain GCE56_17475 PF12833 Helix-turn-helix domain GCE56_17485 PF01494 FAD binding domain GCE56_17490 PF01012 Electron transfer flavoprotein domain GCE56_17490 PF00766 Electron transfer flavoprotein FAD-binding domain GCE56_17495 PF01012 Electron transfer flavoprotein domain GCE56_17500 PF02770 Acyl-CoA dehydrogenase, middle domain GCE56_17500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GCE56_17500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GCE56_17510 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component GCE56_17515 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component GCE56_17520 PF01869 BadF/BadG/BcrA/BcrD ATPase family GCE56_17525 PF02515 CoA-transferase family III GCE56_17530 PF00501 AMP-binding enzyme GCE56_17530 PF13193 AMP-binding enzyme C-terminal domain GCE56_17535 PF00083 Sugar (and other) transporter GCE56_17545 PF01494 FAD binding domain GCE56_17550 PF00766 Electron transfer flavoprotein FAD-binding domain GCE56_17550 PF01012 Electron transfer flavoprotein domain GCE56_17555 PF01012 Electron transfer flavoprotein domain GCE56_17560 PF02028 BCCT, betaine/carnitine/choline family transporter GCE56_17565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GCE56_17565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GCE56_17565 PF02770 Acyl-CoA dehydrogenase, middle domain GCE56_17570 PF02515 CoA-transferase family III GCE56_17575 PF13193 AMP-binding enzyme C-terminal domain GCE56_17575 PF00501 AMP-binding enzyme GCE56_17580 PF00378 Enoyl-CoA hydratase/isomerase GCE56_17585 PF00132 Bacterial transferase hexapeptide (six repeats) GCE56_17590 PF07180 CaiF/GrlA transcriptional regulator GCE56_17595 PF00923 Transaldolase/Fructose-6-phosphate aldolase GCE56_17600 PF18416 N-acetylglucosamine binding protein domain 2 GCE56_17600 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading GCE56_17605 PF02631 RecX family GCE56_17625 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase GCE56_17630 PF03062 MBOAT, membrane-bound O-acyltransferase family GCE56_17650 PF02447 GntP family permease GCE56_17655 PF01202 Shikimate kinase GCE56_17660 PF00356 Bacterial regulatory proteins, lacI family GCE56_17660 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GCE56_17675 PF00005 ABC transporter GCE56_17680 PF13649 Methyltransferase domain GCE56_17685 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain GCE56_17685 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain GCE56_17710 PF07720 Tetratricopeptide repeat GCE56_17720 PF01311 Bacterial export proteins, family 1 GCE56_17725 PF01313 Bacterial export proteins, family 3 GCE56_17730 PF00813 FliP family GCE56_17750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GCE56_17750 PF18269 T3SS EscN ATPase C-terminal domain GCE56_17750 PF02874 ATP synthase alpha/beta family, beta-barrel domain GCE56_17760 PF00771 FHIPEP family GCE56_17765 PF07201 HrpJ-like domain GCE56_17770 PF03958 Bacterial type II/III secretion system short domain GCE56_17770 PF00263 Bacterial type II and III secretion system protein GCE56_17775 PF12833 Helix-turn-helix domain GCE56_17785 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF GCE56_17795 PF01514 Secretory protein of YscJ/FliF family GCE56_17815 PF09278 MerR, DNA binding GCE56_17815 PF00376 MerR family regulatory protein GCE56_17830 PF00873 AcrB/AcrD/AcrF family GCE56_17840 PF00893 Small Multidrug Resistance protein GCE56_17845 PF00893 Small Multidrug Resistance protein GCE56_17855 PF06130 Phosphate propanoyltransferase GCE56_17860 PF00936 BMC domain GCE56_17865 PF13187 4Fe-4S dicluster domain GCE56_17865 PF04055 Radical SAM superfamily GCE56_17870 PF01228 Glycine radical GCE56_17870 PF02901 Pyruvate formate lyase-like GCE56_17875 PF00465 Iron-containing alcohol dehydrogenase GCE56_17880 PF03319 Ethanolamine utilisation protein EutN/carboxysome GCE56_17885 PF00171 Aldehyde dehydrogenase family GCE56_17885 PF00465 Iron-containing alcohol dehydrogenase GCE56_17890 PF00936 BMC domain GCE56_17895 PF00936 BMC domain GCE56_17900 PF00936 BMC domain GCE56_17920 PF01053 Cys/Met metabolism PLP-dependent enzyme GCE56_17925 PF00892 EamA-like transporter family GCE56_17930 PF00419 Fimbrial protein GCE56_17935 PF02753 Pili assembly chaperone PapD, C-terminal domain GCE56_17935 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain GCE56_17940 PF13953 PapC C-terminal domain GCE56_17940 PF00577 Outer membrane usher protein GCE56_17940 PF13954 PapC N-terminal domain GCE56_17945 PF00419 Fimbrial protein GCE56_17950 PF00419 Fimbrial protein GCE56_17950 PF09222 Fimbrial adhesin F17-AG, lectin domain GCE56_17955 PF01381 Helix-turn-helix GCE56_17960 PF13416 Bacterial extracellular solute-binding protein GCE56_17965 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_17970 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_17975 PF00005 ABC transporter GCE56_17975 PF08402 TOBE domain GCE56_17990 PF01207 Dihydrouridine synthase (Dus) GCE56_17995 PF08240 Alcohol dehydrogenase GroES-like domain GCE56_17995 PF00107 Zinc-binding dehydrogenase GCE56_18000 PF00772 DnaB-like helicase N terminal domain GCE56_18000 PF03796 DnaB-like helicase C terminal domain GCE56_18005 PF01168 Alanine racemase, N-terminal domain GCE56_18005 PF00842 Alanine racemase, C-terminal domain GCE56_18010 PF00155 Aminotransferase class I and II GCE56_18015 PF03313 Serine dehydratase alpha chain GCE56_18025 PF00005 ABC transporter GCE56_18025 PF17755 UvrA DNA-binding domain GCE56_18025 PF17760 UvrA interaction domain GCE56_18030 PF00436 Single-strand binding protein family GCE56_18035 PF01475 Ferric uptake regulator family GCE56_18040 PF00717 Peptidase S24-like GCE56_18040 PF01726 LexA DNA binding domain GCE56_18045 PF01219 Prokaryotic diacylglycerol kinase GCE56_18050 PF01553 Acyltransferase GCE56_18055 PF01040 UbiA prenyltransferase family GCE56_18060 PF04345 Chorismate lyase GCE56_18065 PF00342 Phosphoglucose isomerase GCE56_18070 PF01842 ACT domain GCE56_18070 PF00696 Amino acid kinase family GCE56_18085 PF02574 Homocysteine S-methyltransferase GCE56_18085 PF00809 Pterin binding enzyme GCE56_18085 PF02965 Vitamin B12 dependent methionine synthase, activation domain GCE56_18085 PF02310 B12 binding domain GCE56_18085 PF02607 B12 binding domain GCE56_18090 PF01614 Bacterial transcriptional regulator GCE56_18090 PF09339 IclR helix-turn-helix domain GCE56_18095 PF00920 Dehydratase family GCE56_18100 PF01081 KDPG and KHG aldolase GCE56_18105 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) GCE56_18110 PF00463 Isocitrate lyase family GCE56_18115 PF01274 Malate synthase GCE56_18120 PF04204 Homoserine O-succinyltransferase GCE56_18125 PF00465 Iron-containing alcohol dehydrogenase GCE56_18130 PF00293 NUDIX domain GCE56_18160 PF02142 MGS-like domain GCE56_18160 PF01808 AICARFT/IMPCHase bienzyme GCE56_18165 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GCE56_18165 PF02844 Phosphoribosylglycinamide synthetase, N domain GCE56_18165 PF02843 Phosphoribosylglycinamide synthetase, C domain GCE56_18170 PF07356 Protein of unknown function (DUF1481) GCE56_18175 PF00216 Bacterial DNA-binding protein GCE56_18180 PF04222 Protein of unknown function (DUF416) GCE56_18185 PF04493 Endonuclease V GCE56_18190 PF01208 Uroporphyrinogen decarboxylase (URO-D) GCE56_18195 PF00293 NUDIX domain GCE56_18195 PF09297 NADH pyrophosphatase zinc ribbon domain GCE56_18205 PF13667 ThiC-associated domain GCE56_18205 PF01964 Radical SAM ThiC family GCE56_18210 PF02581 Thiamine monophosphate synthase GCE56_18215 PF00899 ThiF family GCE56_18220 PF02597 ThiS family GCE56_18225 PF05690 Thiazole biosynthesis protein ThiG GCE56_18230 PF06968 Biotin and Thiamin Synthesis associated domain GCE56_18230 PF04055 Radical SAM superfamily GCE56_18235 PF04754 Putative transposase, YhgA-like GCE56_18240 PF04997 RNA polymerase Rpb1, domain 1 GCE56_18240 PF04983 RNA polymerase Rpb1, domain 3 GCE56_18240 PF05000 RNA polymerase Rpb1, domain 4 GCE56_18240 PF04998 RNA polymerase Rpb1, domain 5 GCE56_18240 PF00623 RNA polymerase Rpb1, domain 2 GCE56_18245 PF00562 RNA polymerase Rpb2, domain 6 GCE56_18245 PF10385 RNA polymerase beta subunit external 1 domain GCE56_18245 PF04563 RNA polymerase beta subunit GCE56_18245 PF04560 RNA polymerase Rpb2, domain 7 GCE56_18245 PF04565 RNA polymerase Rpb2, domain 3 GCE56_18245 PF04561 RNA polymerase Rpb2, domain 2 GCE56_18250 PF16320 Ribosomal protein L7/L12 dimerisation domain GCE56_18250 PF00542 Ribosomal protein L7/L12 C-terminal domain GCE56_18255 PF00466 Ribosomal protein L10 GCE56_18260 PF00687 Ribosomal protein L1p/L10e family GCE56_18265 PF00298 Ribosomal protein L11, RNA binding domain GCE56_18265 PF03946 Ribosomal protein L11, N-terminal domain GCE56_18270 PF02357 Transcription termination factor nusG GCE56_18270 PF00467 KOW motif GCE56_18275 PF00584 SecE/Sec61-gamma subunits of protein translocation complex GCE56_18280 PF00009 Elongation factor Tu GTP binding domain GCE56_18280 PF03144 Elongation factor Tu domain 2 GCE56_18280 PF03143 Elongation factor Tu C-terminal domain GCE56_18285 PF03144 Elongation factor Tu domain 2 GCE56_18285 PF03764 Elongation factor G, domain IV GCE56_18285 PF00679 Elongation factor G C-terminus GCE56_18285 PF14492 Elongation Factor G, domain II GCE56_18285 PF00009 Elongation factor Tu GTP binding domain GCE56_18290 PF00177 Ribosomal protein S7p/S5e GCE56_18295 PF00164 Ribosomal protein S12/S23 GCE56_18300 PF04077 DsrH like protein GCE56_18305 PF02635 DsrE/DsrF-like family GCE56_18310 PF02635 DsrE/DsrF-like family GCE56_18315 PF13309 HTH domain GCE56_18315 PF08348 YheO-like PAS domain GCE56_18325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GCE56_18325 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GCE56_18330 PF04102 SlyX GCE56_18335 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GCE56_18340 PF09526 Probable metal-binding protein (DUF2387) GCE56_18345 PF00999 Sodium/hydrogen exchanger family GCE56_18345 PF02254 TrkA-N domain GCE56_18350 PF02525 Flavodoxin-like fold GCE56_18355 PF12848 ABC transporter GCE56_18355 PF00005 ABC transporter GCE56_18360 PF00672 HAMP domain GCE56_18360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GCE56_18360 PF02203 Tar ligand binding domain homologue GCE56_18365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GCE56_18365 PF02203 Tar ligand binding domain homologue GCE56_18365 PF00672 HAMP domain GCE56_18370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GCE56_18370 PF08447 PAS fold GCE56_18375 PF01380 SIS domain GCE56_18375 PF01418 Helix-turn-helix domain, rpiR family GCE56_18385 PF00561 alpha/beta hydrolase fold GCE56_18390 PF06794 Uncharacterised protein family (UPF0270) GCE56_18395 PF00485 Phosphoribulokinase / Uridine kinase family GCE56_18400 PF02566 OsmC-like protein GCE56_18405 PF13545 Crp-like helix-turn-helix domain GCE56_18405 PF00027 Cyclic nucleotide-binding domain GCE56_18410 PF00202 Aminotransferase class-III GCE56_18415 PF00117 Glutamine amidotransferase class-I GCE56_18420 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GCE56_18425 PF01926 50S ribosome-binding GTPase GCE56_18430 PF01327 Polypeptide deformylase GCE56_18435 PF01367 5'-3' exonuclease, C-terminal SAM fold GCE56_18435 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GCE56_18435 PF00476 DNA polymerase family A GCE56_18435 PF01612 3'-5' exonuclease GCE56_18445 PF01323 DSBA-like thioredoxin domain GCE56_18450 PF01636 Phosphotransferase enzyme family GCE56_18455 PF06288 Protein of unknown function (DUF1040) GCE56_18460 PF12804 MobA-like NTP transferase domain GCE56_18465 PF03205 Molybdopterin guanine dinucleotide synthesis protein B GCE56_18475 PF01266 FAD dependent oxidoreductase GCE56_18480 PF07992 Pyridine nucleotide-disulphide oxidoreductase GCE56_18480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GCE56_18485 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ GCE56_18495 PF03631 Virulence factor BrkB GCE56_18500 PF01361 Tautomerase enzyme GCE56_18505 PF00675 Insulinase (Peptidase family M16) GCE56_18505 PF05193 Peptidase M16 inactive domain GCE56_18510 PF00672 HAMP domain GCE56_18510 PF00990 Diguanylate cyclase, GGDEF domain GCE56_18510 PF17154 Gammaproteobacterial periplasmic sensor domain GCE56_18510 PF00563 EAL domain GCE56_18515 PF05594 Haemagluttinin repeat GCE56_18515 PF13332 Hemagglutinin repeat GCE56_18515 PF05860 haemagglutination activity domain GCE56_18515 PF15526 Novel toxin 21 GCE56_18515 PF04829 Pre-toxin domain with VENN motif GCE56_18520 PF00005 ABC transporter GCE56_18520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GCE56_18525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GCE56_18525 PF00005 ABC transporter GCE56_18530 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_18530 PF12911 N-terminal TM domain of oligopeptide transport permease C GCE56_18535 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_18540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GCE56_18545 PF17287 POTRA domain GCE56_18545 PF08479 POTRA domain, ShlB-type GCE56_18545 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB GCE56_18560 PF07119 Protein of unknown function (DUF1375) GCE56_18565 PF06826 Predicted Permease Membrane Region GCE56_18565 PF02080 TrkA-C domain GCE56_18570 PF00155 Aminotransferase class I and II GCE56_18575 PF03352 Methyladenine glycosylase GCE56_18580 PF02091 Glycyl-tRNA synthetase alpha subunit GCE56_18585 PF05746 DALR anticodon binding domain GCE56_18585 PF02092 Glycyl-tRNA synthetase beta subunit GCE56_18610 PF12566 Protein of unknown function (DUF3748) GCE56_18610 PF07676 WD40-like Beta Propeller Repeat GCE56_18615 PF03458 UPF0126 domain GCE56_18620 PF00625 Guanylate kinase GCE56_18625 PF01192 RNA polymerase Rpb6 GCE56_18630 PF04607 Region found in RelA / SpoT proteins GCE56_18630 PF02824 TGS domain GCE56_18630 PF13291 ACT domain GCE56_18635 PF00588 SpoU rRNA Methylase family GCE56_18635 PF12105 SpoU, rRNA methylase, C-terminal GCE56_18640 PF00270 DEAD/DEAH box helicase GCE56_18640 PF00271 Helicase conserved C-terminal domain GCE56_18640 PF17191 RecG wedge domain GCE56_18645 PF03616 Sodium/glutamate symporter GCE56_18650 PF00860 Permease family GCE56_18660 PF05170 AsmA family GCE56_18670 PF01479 S4 domain GCE56_18670 PF00849 RNA pseudouridylate synthase GCE56_18675 PF09500 Putative thioesterase (yiiD_Cterm) GCE56_18675 PF00583 Acetyltransferase (GNAT) family GCE56_18680 PF02580 D-Tyr-tRNA(Tyr) deacylase GCE56_18685 PF13419 Haloacid dehalogenase-like hydrolase GCE56_18715 PF00120 Glutamine synthetase, catalytic domain GCE56_18715 PF03951 Glutamine synthetase, beta-Grasp domain GCE56_18720 PF00512 His Kinase A (phospho-acceptor) domain GCE56_18720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_18725 PF00072 Response regulator receiver domain GCE56_18725 PF02954 Bacterial regulatory protein, Fis family GCE56_18725 PF00158 Sigma-54 interaction domain GCE56_18730 PF06969 HemN C-terminal domain GCE56_18730 PF04055 Radical SAM superfamily GCE56_18735 PF05643 Putative bacterial lipoprotein (DUF799) GCE56_18745 PF03783 Curli production assembly/transport component CsgG GCE56_18750 PF00575 S1 RNA binding domain GCE56_18750 PF16921 Tex protein YqgF-like domain GCE56_18750 PF09371 Tex-like protein N-terminal domain GCE56_18750 PF17674 HHH domain GCE56_18755 PF03449 Transcription elongation factor, N-terminal GCE56_18755 PF01272 Transcription elongation factor, GreA/GreB, C-term GCE56_18760 PF00486 Transcriptional regulatory protein, C terminal GCE56_18760 PF00072 Response regulator receiver domain GCE56_18765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCE56_18765 PF00672 HAMP domain GCE56_18765 PF00512 His Kinase A (phospho-acceptor) domain GCE56_18770 PF12849 PBP superfamily domain GCE56_18775 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_18780 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_18785 PF00005 ABC transporter GCE56_18790 PF01895 PhoU domain GCE56_18795 PF00497 Bacterial extracellular solute-binding proteins, family 3 GCE56_18805 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_18830 PF00005 ABC transporter GCE56_18845 PF00109 Beta-ketoacyl synthase, N-terminal domain GCE56_18845 PF02801 Beta-ketoacyl synthase, C-terminal domain GCE56_18850 PF01571 Aminomethyltransferase folate-binding domain GCE56_18850 PF08669 Glycine cleavage T-protein C-terminal barrel domain GCE56_18855 PF00550 Phosphopantetheine attachment site GCE56_18860 PF07977 FabA-like domain GCE56_18870 PF01648 4'-phosphopantetheinyl transferase superfamily GCE56_18875 PF14436 Bacterial EndoU nuclease GCE56_18875 PF05594 Haemagluttinin repeat GCE56_18875 PF05860 haemagglutination activity domain GCE56_18875 PF04829 Pre-toxin domain with VENN motif GCE56_18875 PF13332 Hemagglutinin repeat GCE56_18880 PF00860 Permease family GCE56_18885 PF13302 Acetyltransferase (GNAT) domain GCE56_18895 PF04220 Der GTPase activator (YihI) GCE56_18905 PF04023 FeoA domain GCE56_18910 PF07664 Ferrous iron transport protein B C terminus GCE56_18910 PF07670 Nucleoside recognition GCE56_18910 PF02421 Ferrous iron transport protein B GCE56_18910 PF17910 FeoB cytosolic helical domain GCE56_18915 PF09012 FeoC like transcriptional regulator GCE56_18925 PF00561 alpha/beta hydrolase fold GCE56_18930 PF00156 Phosphoribosyl transferase domain GCE56_18935 PF01521 Iron-sulphur cluster biosynthesis GCE56_18935 PF01106 NifU-like domain GCE56_18940 PF00581 Rhodanese-like domain GCE56_18945 PF01694 Rhomboid family GCE56_18945 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease GCE56_18950 PF08220 DeoR-like helix-turn-helix domain GCE56_18950 PF00455 DeoR C terminal sensor domain GCE56_18955 PF16901 C-terminal domain of alpha-glycerophosphate oxidase GCE56_18955 PF01266 FAD dependent oxidoreductase GCE56_18960 PF04343 Protein of unknown function, DUF488 GCE56_18965 PF02219 Methylenetetrahydrofolate reductase GCE56_18975 PF00356 Bacterial regulatory proteins, lacI family GCE56_18980 PF01970 Tripartite tricarboxylate transporter TctA family GCE56_18990 PF03401 Tripartite tricarboxylate transporter family receptor GCE56_19000 PF00701 Dihydrodipicolinate synthetase family GCE56_19010 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GCE56_19010 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GCE56_19020 PF00005 ABC transporter GCE56_19025 PF00005 ABC transporter GCE56_19030 PF12911 N-terminal TM domain of oligopeptide transport permease C GCE56_19030 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_19035 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_19040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GCE56_19045 PF12697 Alpha/beta hydrolase family GCE56_19045 PF08241 Methyltransferase domain GCE56_19055 PF13505 Outer membrane protein beta-barrel domain GCE56_19060 PF04794 YdjC-like protein GCE56_19065 PF02056 Family 4 glycosyl hydrolase GCE56_19065 PF11975 Family 4 glycosyl hydrolase C-terminal domain GCE56_19070 PF07883 Cupin domain GCE56_19070 PF12833 Helix-turn-helix domain GCE56_19075 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit GCE56_19080 PF02378 Phosphotransferase system, EIIC GCE56_19085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GCE56_19090 PF01497 Periplasmic binding protein GCE56_19095 PF01032 FecCD transport family GCE56_19100 PF01032 FecCD transport family GCE56_19105 PF00005 ABC transporter GCE56_19115 PF07690 Major Facilitator Superfamily GCE56_19125 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GCE56_19125 PF01568 Molydopterin dinucleotide binding domain GCE56_19125 PF00384 Molybdopterin oxidoreductase GCE56_19130 PF12800 4Fe-4S binding domain GCE56_19130 PF13247 4Fe-4S dicluster domain GCE56_19135 PF04976 DMSO reductase anchor subunit (DmsC) GCE56_19140 PF00356 Bacterial regulatory proteins, lacI family GCE56_19140 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GCE56_19150 PF03825 Nucleoside H+ symporter GCE56_19155 PF02308 MgtC family GCE56_19160 PF01757 Acyltransferase family GCE56_19170 PF00701 Dihydrodipicolinate synthetase family GCE56_19175 PF01418 Helix-turn-helix domain, rpiR family GCE56_19175 PF01380 SIS domain GCE56_19180 PF04074 YhcH/YjgK/YiaL GCE56_19185 PF00474 Sodium:solute symporter family GCE56_19190 PF00480 ROK family GCE56_19195 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase GCE56_19200 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GCE56_19200 PF01568 Molydopterin dinucleotide binding domain GCE56_19200 PF00384 Molybdopterin oxidoreductase GCE56_19205 PF00209 Sodium:neurotransmitter symporter family GCE56_19210 PF10397 Adenylosuccinate lyase C-terminus GCE56_19210 PF00206 Lyase GCE56_19215 PF02378 Phosphotransferase system, EIIC GCE56_19215 PF00367 phosphotransferase system, EIIB GCE56_19220 PF01418 Helix-turn-helix domain, rpiR family GCE56_19220 PF01380 SIS domain GCE56_19225 PF00313 'Cold-shock' DNA-binding domain GCE56_19230 PF00849 RNA pseudouridylate synthase GCE56_19235 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) GCE56_19240 PF01844 HNH endonuclease GCE56_19245 PF12323 Helix-turn-helix domain GCE56_19245 PF01385 Probable transposase GCE56_19245 PF07282 Putative transposase DNA-binding domain GCE56_19250 PF01797 Transposase IS200 like GCE56_19255 PF05638 Type VI secretion system effector, Hcp GCE56_19260 PF04717 Type VI secretion system, phage-baseplate injector GCE56_19300 PF15976 CS1-pili formation C-terminal GCE56_19300 PF16967 E-set like domain GCE56_19305 PF18649 EcpB C-terminal domain GCE56_19310 PF16449 Fimbrillin MatB GCE56_19345 PF06755 CbtA_toxin of type IV toxin-antitoxin system GCE56_19350 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A GCE56_19355 PF06174 Protein of unknown function (DUF987) GCE56_19360 PF04002 RadC-like JAB domain GCE56_19365 PF03230 Antirestriction protein GCE56_19375 PF06067 Domain of unknown function (DUF932) GCE56_19385 PF06006 Bacterial protein of unknown function (DUF905) GCE56_19390 PF13018 Extended Signal Peptide of Type V secretion system GCE56_19390 PF03797 Autotransporter beta-domain GCE56_19390 PF16168 Adhesin of bacterial autotransporter system, probable stalk GCE56_19470 PF13005 zinc-finger binding domain of transposase IS66 GCE56_19470 PF13007 Transposase C of IS166 homeodomain GCE56_19470 PF03050 Transposase IS66 family GCE56_19470 PF13817 IS66 C-terminal element GCE56_19475 PF05717 IS66 Orf2 like protein GCE56_19485 PF01609 Transposase DDE domain GCE56_19485 PF05598 Transposase domain (DUF772) GCE56_19500 PF00302 Chloramphenicol acetyltransferase GCE56_19520 PF13610 DDE domain GCE56_19545 PF13610 DDE domain GCE56_19550 PF01636 Phosphotransferase enzyme family GCE56_19555 PF13610 DDE domain GCE56_19580 PF00809 Pterin binding enzyme GCE56_19585 PF01636 Phosphotransferase enzyme family GCE56_19590 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase GCE56_19615 PF02522 Aminoglycoside 3-N-acetyltransferase GCE56_19675 PF00809 Pterin binding enzyme GCE56_19680 PF00893 Small Multidrug Resistance protein GCE56_19685 PF01909 Nucleotidyltransferase domain GCE56_19685 PF13427 Domain of unknown function (DUF4111) GCE56_19690 PF00186 Dihydrofolate reductase GCE56_19695 PF00589 Phage integrase family GCE56_19695 PF13495 Phage integrase, N-terminal SAM-like domain GCE56_19705 PF11809 Domain of unknown function (DUF3330) GCE56_19705 PF00563 EAL domain GCE56_19715 PF13610 DDE domain GCE56_19730 PF13188 PAS domain GCE56_19730 PF03707 Bacterial signalling protein N terminal repeat GCE56_19730 PF00563 EAL domain GCE56_19730 PF00990 Diguanylate cyclase, GGDEF domain GCE56_19735 PF05052 MerE protein GCE56_19740 PF13411 MerR HTH family regulatory protein GCE56_19745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GCE56_19745 PF07992 Pyridine nucleotide-disulphide oxidoreductase GCE56_19745 PF00403 Heavy-metal-associated domain GCE56_19750 PF03203 MerC mercury resistance protein GCE56_19755 PF00403 Heavy-metal-associated domain GCE56_19760 PF02411 MerT mercuric transport protein GCE56_19765 PF00376 MerR family regulatory protein GCE56_19765 PF09278 MerR, DNA binding GCE56_19795 PF14659 Phage integrase, N-terminal SAM-like domain GCE56_19795 PF00589 Phage integrase family GCE56_19795 PF13356 Arm DNA-binding domain GCE56_19805 PF01432 Peptidase family M3 GCE56_19810 PF04445 Putative SAM-dependent methyltransferase GCE56_19820 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GCE56_19820 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GCE56_19825 PF00582 Universal stress protein family GCE56_19830 PF10625 Universal stress protein B (UspB) GCE56_19835 PF01384 Phosphate transporter family GCE56_19860 PF17954 Quercetinase C-terminal cupin domain GCE56_19860 PF02678 Pirin GCE56_19865 PF01293 Phosphoenolpyruvate carboxykinase GCE56_19870 PF01430 Hsp33 protein GCE56_19875 PF01479 S4 domain GCE56_19880 PF07095 Intracellular growth attenuator protein IgaA GCE56_19885 PF00293 NUDIX domain GCE56_19890 PF03180 NLPA lipoprotein GCE56_19895 PF00905 Penicillin binding protein transpeptidase domain GCE56_19895 PF17092 Penicillin-binding protein OB-like domain GCE56_19895 PF00912 Transglycosylase GCE56_19915 PF03958 Bacterial type II/III secretion system short domain GCE56_19915 PF00263 Bacterial type II and III secretion system protein GCE56_19920 PF01202 Shikimate kinase GCE56_19925 PF01761 3-dehydroquinate synthase GCE56_19930 PF05036 Sporulation related domain GCE56_19935 PF02086 D12 class N6 adenine-specific DNA methyltransferase GCE56_19940 PF00834 Ribulose-phosphate 3 epimerase family GCE56_19945 PF13419 Haloacid dehalogenase-like hydrolase GCE56_19950 PF00579 tRNA synthetases class I (W and Y) GCE56_19960 PF01797 Transposase IS200 like GCE56_19965 PF03473 MOSC domain GCE56_19965 PF03475 3-alpha domain GCE56_19970 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain GCE56_19970 PF02777 Iron/manganese superoxide dismutases, C-terminal domain GCE56_19975 PF13193 AMP-binding enzyme C-terminal domain GCE56_19975 PF00501 AMP-binding enzyme GCE56_19975 PF16177 Acetyl-coenzyme A synthetase N-terminus GCE56_19980 PF04341 Protein of unknown function, DUF485 GCE56_19985 PF00474 Sodium:solute symporter family GCE56_19990 PF00884 Sulfatase GCE56_19995 PF07282 Putative transposase DNA-binding domain GCE56_19995 PF12323 Helix-turn-helix domain GCE56_19995 PF01385 Probable transposase GCE56_20000 PF01797 Transposase IS200 like GCE56_20005 PF02589 LUD domain GCE56_20010 PF13183 4Fe-4S dicluster domain GCE56_20010 PF11870 Domain of unknown function (DUF3390) GCE56_20010 PF02589 LUD domain GCE56_20015 PF02754 Cysteine-rich domain GCE56_20040 PF00392 Bacterial regulatory proteins, gntR family GCE56_20040 PF07729 FCD domain GCE56_20045 PF07690 Major Facilitator Superfamily GCE56_20050 PF00294 pfkB family carbohydrate kinase GCE56_20055 PF17868 AAA lid domain GCE56_20055 PF12592 Protein of unknown function (DUF3763) GCE56_20055 PF07728 AAA domain (dynein-related subfamily) GCE56_20060 PF05762 VWA domain containing CoxE-like protein GCE56_20065 PF03590 Aspartate-ammonia ligase GCE56_20070 PF01037 Lrp/AsnC ligand binding domain GCE56_20075 PF00258 Flavodoxin GCE56_20080 PF13932 GidA associated domain GCE56_20080 PF01134 Glucose inhibited division protein A GCE56_20085 PF02527 rRNA small subunit methyltransferase G GCE56_20090 PF03899 ATP synthase I chain GCE56_20095 PF00119 ATP synthase A chain GCE56_20100 PF00137 ATP synthase subunit C GCE56_20105 PF00430 ATP synthase B/B' CF(0) GCE56_20110 PF00213 ATP synthase delta (OSCP) subunit GCE56_20115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GCE56_20115 PF02874 ATP synthase alpha/beta family, beta-barrel domain GCE56_20115 PF00306 ATP synthase alpha/beta chain, C terminal domain GCE56_20120 PF00231 ATP synthase GCE56_20125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GCE56_20125 PF02874 ATP synthase alpha/beta family, beta-barrel domain GCE56_20130 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain GCE56_20130 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain GCE56_20135 PF12804 MobA-like NTP transferase domain GCE56_20135 PF00132 Bacterial transferase hexapeptide (six repeats) GCE56_20140 PF01380 SIS domain GCE56_20145 PF08721 TnsA endonuclease C terminal GCE56_20145 PF08722 TnsA endonuclease N terminal GCE56_20150 PF00665 Integrase core domain GCE56_20155 PF11426 Tn7 transposition regulator TnsC GCE56_20155 PF13401 AAA domain GCE56_20160 PF15978 Tn7-like transposition protein D GCE56_20160 PF06527 TniQ GCE56_20165 PF18623 TnsE C-terminal domain GCE56_20195 PF00583 Acetyltransferase (GNAT) family GCE56_20200 PF00186 Dihydrofolate reductase GCE56_20205 PF13495 Phage integrase, N-terminal SAM-like domain GCE56_20205 PF00589 Phage integrase family GCE56_20210 PF00589 Phage integrase family GCE56_20210 PF13495 Phage integrase, N-terminal SAM-like domain GCE56_20220 PF00005 ABC transporter GCE56_20220 PF08402 TOBE domain GCE56_20225 PF00528 Binding-protein-dependent transport system inner membrane component GCE56_20235 PF01266 FAD dependent oxidoreductase GCE56_20260 PF03606 C4-dicarboxylate anaerobic carrier GCE56_20265 PF00440 Bacterial regulatory proteins, tetR family GCE56_20265 PF02909 Tetracyclin repressor-like, C-terminal domain GCE56_20270 PF13533 Biotin-lipoyl like GCE56_20290 PF13953 PapC C-terminal domain GCE56_20290 PF00577 Outer membrane usher protein GCE56_20290 PF13954 PapC N-terminal domain GCE56_20295 PF13953 PapC C-terminal domain GCE56_20295 PF13954 PapC N-terminal domain GCE56_20295 PF00577 Outer membrane usher protein GCE56_20320 PF04076 Bacterial OB fold (BOF) protein GCE56_20330 PF00480 ROK family GCE56_20340 PF00535 Glycosyl transferase family 2 GCE56_20340 PF03552 Cellulose synthase GCE56_20340 PF07238 PilZ domain GCE56_20345 PF03170 Bacterial cellulose synthase subunit GCE56_20350 PF13181 Tetratricopeptide repeat GCE56_20350 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) GCE56_20360 PF08448 PAS fold GCE56_20360 PF00990 Diguanylate cyclase, GGDEF domain GCE56_20365 PF00483 Nucleotidyl transferase GCE56_20370 PF01270 Glycosyl hydrolases family 8 GCE56_20375 PF00884 Sulfatase GCE56_20380 PF03144 Elongation factor Tu domain 2 GCE56_20380 PF09107 Elongation factor SelB, winged helix GCE56_20380 PF09106 Elongation factor SelB, winged helix GCE56_20380 PF00009 Elongation factor Tu GTP binding domain GCE56_20385 PF12390 Selenocysteine synthase N terminal GCE56_20385 PF03841 L-seryl-tRNA selenium transferase GCE56_20390 PF04216 Protein involved in formate dehydrogenase formation GCE56_20395 PF01292 Prokaryotic cytochrome b561 GCE56_20400 PF13247 4Fe-4S dicluster domain GCE56_20400 PF09163 Formate dehydrogenase N, transmembrane GCE56_20410 PF02634 FdhD/NarQ family GCE56_20430 PF00795 Carbon-nitrogen hydrolase GCE56_20435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GCE56_20435 PF03466 LysR substrate binding domain GCE56_20455 PF03544 Gram-negative bacterial TonB protein C-terminal GCE56_20470 PF06496 Protein of unknown function (DUF1097) GCE56_20475 PF13657 HipA N-terminal domain GCE56_20475 PF07804 HipA-like C-terminal domain GCE56_20485 PF01926 50S ribosome-binding GTPase GCE56_20485 PF12631 MnmE helical domain GCE56_20485 PF10396 GTP-binding protein TrmE N-terminus GCE56_20490 PF02096 60Kd inner membrane protein GCE56_20490 PF14849 YidC periplasmic domain GCE56_20495 PF01809 Putative membrane protein insertion efficiency factor GCE56_20500 PF00825 Ribonuclease P GCE56_20505 PF00468 Ribosomal protein L34