locus-tag class description Patl_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Patl_0002 PF02767 DNA polymerase III beta subunit, central domain Patl_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Patl_0003 PF02463 RecF/RecN/SMC N terminal domain Patl_0004 PF18053 DNA gyrase B subunit insert domain Patl_0004 PF00204 DNA gyrase B Patl_0004 PF00986 DNA gyrase B subunit, carboxyl terminus Patl_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_0004 PF01751 Toprim domain Patl_0005 PF01177 Asp/Glu/Hydantoin racemase Patl_0006 PF03707 Bacterial signalling protein N terminal repeat Patl_0006 PF13188 PAS domain Patl_0006 PF00563 EAL domain Patl_0006 PF00990 Diguanylate cyclase, GGDEF domain Patl_0008 PF02092 Glycyl-tRNA synthetase beta subunit Patl_0008 PF05746 DALR anticodon binding domain Patl_0009 PF02091 Glycyl-tRNA synthetase alpha subunit Patl_0010 PF03352 Methyladenine glycosylase Patl_0012 PF04220 Der GTPase activator (YihI) Patl_0013 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Patl_0014 PF01926 50S ribosome-binding GTPase Patl_0015 PF00476 DNA polymerase family A Patl_0015 PF01612 3'-5' exonuclease Patl_0015 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Patl_0015 PF01367 5'-3' exonuclease, C-terminal SAM fold Patl_0016 PF02386 Cation transport protein Patl_0017 PF05818 Enterobacterial TraT complement resistance protein Patl_0020 PF02254 TrkA-N domain Patl_0020 PF02080 TrkA-C domain Patl_0021 PF01189 16S rRNA methyltransferase RsmB/F Patl_0021 PF01029 NusB family Patl_0022 PF02911 Formyl transferase, C-terminal domain Patl_0022 PF00551 Formyl transferase Patl_0023 PF01327 Polypeptide deformylase Patl_0025 PF17782 DprA winged helix domain Patl_0025 PF02481 DNA recombination-mediator protein A Patl_0026 PF04361 Protein of unknown function (DUF494) Patl_0027 PF01396 Topoisomerase DNA binding C4 zinc finger Patl_0028 PF01300 Telomere recombination Patl_0029 PF01218 Coproporphyrinogen III oxidase Patl_0030 PF03922 OmpW family Patl_0031 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Patl_0031 PF08501 Shikimate dehydrogenase substrate binding domain Patl_0031 PF01488 Shikimate / quinate 5-dehydrogenase Patl_0033 PF00132 Bacterial transferase hexapeptide (six repeats) Patl_0036 PF00154 recA bacterial DNA recombination protein Patl_0042 PF02225 PA domain Patl_0042 PF04389 Peptidase family M28 Patl_0044 PF00440 Bacterial regulatory proteins, tetR family Patl_0045 PF02441 Flavoprotein Patl_0045 PF04127 DNA / pantothenate metabolism flavoprotein Patl_0046 PF04002 RadC-like JAB domain Patl_0048 PF00830 Ribosomal L28 family Patl_0049 PF00471 Ribosomal protein L33 Patl_0051 PF06827 Zinc finger found in FPG and IleRS Patl_0051 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Patl_0051 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Patl_0053 PF01467 Cytidylyltransferase-like Patl_0056 PF00534 Glycosyl transferases group 1 Patl_0057 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Patl_0060 PF03707 Bacterial signalling protein N terminal repeat Patl_0060 PF00990 Diguanylate cyclase, GGDEF domain Patl_0060 PF00563 EAL domain Patl_0061 PF00155 Aminotransferase class I and II Patl_0062 PF08240 Alcohol dehydrogenase GroES-like domain Patl_0062 PF00107 Zinc-binding dehydrogenase Patl_0063 PF00581 Rhodanese-like domain Patl_0064 PF01694 Rhomboid family Patl_0064 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease Patl_0066 PF04345 Chorismate lyase Patl_0067 PF01040 UbiA prenyltransferase family Patl_0068 PF00672 HAMP domain Patl_0068 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Patl_0069 PF04380 Membrane fusogenic activity Patl_0070 PF13361 UvrD-like helicase C-terminal domain Patl_0070 PF00580 UvrD/REP helicase N-terminal domain Patl_0071 PF00990 Diguanylate cyclase, GGDEF domain Patl_0071 PF03707 Bacterial signalling protein N terminal repeat Patl_0071 PF00563 EAL domain Patl_0072 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Patl_0074 PF00561 alpha/beta hydrolase fold Patl_0075 PF04362 Bacterial Fe(2+) trafficking Patl_0076 PF14815 NUDIX domain Patl_0076 PF00730 HhH-GPD superfamily base excision DNA repair protein Patl_0076 PF00633 Helix-hairpin-helix motif Patl_0076 PF10576 Iron-sulfur binding domain of endonuclease III Patl_0077 PF12697 Alpha/beta hydrolase family Patl_0078 PF02390 Putative methyltransferase Patl_0079 PF08468 Methyltransferase small domain N-terminal Patl_0079 PF05175 Methyltransferase small domain Patl_0080 PF08323 Starch synthase catalytic domain Patl_0080 PF00534 Glycosyl transferases group 1 Patl_0081 PF00497 Bacterial extracellular solute-binding proteins, family 3 Patl_0081 PF00512 His Kinase A (phospho-acceptor) domain Patl_0081 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_0082 PF00486 Transcriptional regulatory protein, C terminal Patl_0082 PF00072 Response regulator receiver domain Patl_0083 PF04186 FxsA cytoplasmic membrane protein Patl_0084 PF02683 Cytochrome C biogenesis protein transmembrane region Patl_0084 PF11412 Disulphide bond corrector protein DsbC Patl_0087 PF04336 Acyl carrier protein phosphodiesterase Patl_0088 PF01220 Dehydroquinase class II Patl_0089 PF00364 Biotin-requiring enzyme Patl_0090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Patl_0090 PF02785 Biotin carboxylase C-terminal domain Patl_0090 PF00289 Biotin carboxylase, N-terminal domain Patl_0091 PF01554 MatE Patl_0095 PF01156 Inosine-uridine preferring nucleoside hydrolase Patl_0098 PF01699 Sodium/calcium exchanger protein Patl_0100 PF01047 MarR family Patl_0101 PF02566 OsmC-like protein Patl_0102 PF01434 Peptidase family M41 Patl_0102 PF00004 ATPase family associated with various cellular activities (AAA) Patl_0102 PF17862 AAA+ lid domain Patl_0104 PF12833 Helix-turn-helix domain Patl_0104 PF01965 DJ-1/PfpI family Patl_0105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_0105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_0105 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_0106 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_0106 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_0106 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_0107 PF01272 Transcription elongation factor, GreA/GreB, C-term Patl_0107 PF03449 Transcription elongation factor, N-terminal Patl_0108 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Patl_0108 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Patl_0110 PF04102 SlyX Patl_0112 PF00005 ABC transporter Patl_0112 PF12848 ABC transporter Patl_0114 PF03466 LysR substrate binding domain Patl_0114 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_0115 PF03601 Conserved hypothetical protein 698 Patl_0117 PF07971 Glycosyl hydrolase family 92 Patl_0117 PF17678 Glycosyl hydrolase family 92 N-terminal domain Patl_0119 PF07690 Major Facilitator Superfamily Patl_0120 PF07971 Glycosyl hydrolase family 92 Patl_0120 PF17678 Glycosyl hydrolase family 92 N-terminal domain Patl_0121 PF00356 Bacterial regulatory proteins, lacI family Patl_0124 PF01869 BadF/BadG/BcrA/BcrD ATPase family Patl_0125 PF01112 Asparaginase Patl_0129 PF00474 Sodium:solute symporter family Patl_0130 PF17678 Glycosyl hydrolase family 92 N-terminal domain Patl_0130 PF07971 Glycosyl hydrolase family 92 Patl_0131 PF01380 SIS domain Patl_0134 PF00561 alpha/beta hydrolase fold Patl_0135 PF06794 Uncharacterised protein family (UPF0270) Patl_0137 PF00459 Inositol monophosphatase family Patl_0138 PF00293 NUDIX domain Patl_0139 PF13419 Haloacid dehalogenase-like hydrolase Patl_0140 PF00719 Inorganic pyrophosphatase Patl_0143 PF02743 Cache domain Patl_0143 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Patl_0143 PF00672 HAMP domain Patl_0146 PF17760 UvrA interaction domain Patl_0146 PF00005 ABC transporter Patl_0146 PF17755 UvrA DNA-binding domain Patl_0147 PF07690 Major Facilitator Superfamily Patl_0148 PF00436 Single-strand binding protein family Patl_0149 PF07715 TonB-dependent Receptor Plug Domain Patl_0149 PF00593 TonB dependent receptor Patl_0151 PF03441 FAD binding domain of DNA photolyase Patl_0151 PF00875 DNA photolyase Patl_0152 PF00875 DNA photolyase Patl_0152 PF03441 FAD binding domain of DNA photolyase Patl_0153 PF00171 Aldehyde dehydrogenase family Patl_0154 PF13193 AMP-binding enzyme C-terminal domain Patl_0154 PF00501 AMP-binding enzyme Patl_0155 PF07715 TonB-dependent Receptor Plug Domain Patl_0155 PF00593 TonB dependent receptor Patl_0157 PF02975 Methylamine dehydrogenase, L chain Patl_0158 PF00578 AhpC/TSA family Patl_0160 PF06433 Methylamine dehydrogenase heavy chain (MADH) Patl_0161 PF17925 Tetracyclin repressor-like, C-terminal domain Patl_0161 PF00440 Bacterial regulatory proteins, tetR family Patl_0163 PF00202 Aminotransferase class-III Patl_0164 PF04958 Arginine N-succinyltransferase beta subunit Patl_0170 PF00263 Bacterial type II and III secretion system protein Patl_0170 PF03958 Bacterial type II/III secretion system short domain Patl_0171 PF01471 Putative peptidoglycan binding domain Patl_0171 PF13401 AAA domain Patl_0174 PF00482 Type II secretion system (T2SS), protein F Patl_0176 PF00114 Pilin (bacterial filament) Patl_0176 PF07963 Prokaryotic N-terminal methylation motif Patl_0177 PF07963 Prokaryotic N-terminal methylation motif Patl_0177 PF00114 Pilin (bacterial filament) Patl_0178 PF00114 Pilin (bacterial filament) Patl_0178 PF07963 Prokaryotic N-terminal methylation motif Patl_0184 PF04085 rod shape-determining protein MreC Patl_0185 PF04093 rod shape-determining protein MreD Patl_0186 PF02545 Maf-like protein Patl_0187 PF00575 S1 RNA binding domain Patl_0187 PF10150 Ribonuclease E/G family Patl_0188 PF13116 Protein of unknown function Patl_0188 PF13502 AsmA-like C-terminal region Patl_0189 PF00795 Carbon-nitrogen hydrolase Patl_0190 PF01523 Putative modulator of DNA gyrase Patl_0192 PF04751 Protein of unknown function (DUF615) Patl_0193 PF01523 Putative modulator of DNA gyrase Patl_0194 PF00326 Prolyl oligopeptidase family Patl_0196 PF13417 Glutathione S-transferase, N-terminal domain Patl_0198 PF01145 SPFH domain / Band 7 family Patl_0199 PF00557 Metallopeptidase family M24 Patl_0200 PF01464 Transglycosylase SLT domain Patl_0200 PF14718 Soluble lytic murein transglycosylase L domain Patl_0201 PF00378 Enoyl-CoA hydratase/isomerase Patl_0201 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Patl_0201 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Patl_0202 PF00108 Thiolase, N-terminal domain Patl_0202 PF02803 Thiolase, C-terminal domain Patl_0203 PF00593 TonB dependent receptor Patl_0203 PF07715 TonB-dependent Receptor Plug Domain Patl_0207 PF01738 Dienelactone hydrolase family Patl_0208 PF00440 Bacterial regulatory proteins, tetR family Patl_0210 PF03976 Polyphosphate kinase 2 (PPK2) Patl_0212 PF00266 Aminotransferase class-V Patl_0215 PF00709 Adenylosuccinate synthetase Patl_0216 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) Patl_0217 PF00989 PAS fold Patl_0217 PF00512 His Kinase A (phospho-acceptor) domain Patl_0217 PF00672 HAMP domain Patl_0217 PF18698 Histidine kinase sensor domain Patl_0217 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_0218 PF00072 Response regulator receiver domain Patl_0218 PF00486 Transcriptional regulatory protein, C terminal Patl_0224 PF00485 Phosphoribulokinase / Uridine kinase family Patl_0225 PF00072 Response regulator receiver domain Patl_0225 PF00486 Transcriptional regulatory protein, C terminal Patl_0226 PF00512 His Kinase A (phospho-acceptor) domain Patl_0226 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_0226 PF00672 HAMP domain Patl_0227 PF01430 Hsp33 protein Patl_0228 PF01479 S4 domain Patl_0229 PF00106 short chain dehydrogenase Patl_0230 PF11356 Type II secretion system protein C Patl_0231 PF00263 Bacterial type II and III secretion system protein Patl_0231 PF03958 Bacterial type II/III secretion system short domain Patl_0232 PF00437 Type II/IV secretion system protein Patl_0233 PF00482 Type II secretion system (T2SS), protein F Patl_0234 PF08334 Type II secretion system (T2SS), protein G Patl_0234 PF07963 Prokaryotic N-terminal methylation motif Patl_0235 PF12019 Type II transport protein GspH Patl_0236 PF02501 Type II secretion system (T2SS), protein I Patl_0236 PF07963 Prokaryotic N-terminal methylation motif Patl_0237 PF07963 Prokaryotic N-terminal methylation motif Patl_0237 PF11612 Type II secretion system (T2SS), protein J Patl_0238 PF03934 Type II secretion system (T2SS), protein K Patl_0239 PF12693 GspL periplasmic domain Patl_0239 PF05134 Type II secretion system (T2SS), protein L Patl_0240 PF04612 Type II secretion system (T2SS), protein M Patl_0241 PF01203 Type II secretion system (T2SS), protein N Patl_0242 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Patl_0243 PF08245 Mur ligase middle domain Patl_0243 PF02875 Mur ligase family, glutamate ligase domain Patl_0243 PF01225 Mur ligase family, catalytic domain Patl_0245 PF01208 Uroporphyrinogen decarboxylase (URO-D) Patl_0246 PF00293 NUDIX domain Patl_0246 PF09297 NADH pyrophosphatase zinc ribbon domain Patl_0247 PF01475 Ferric uptake regulator family Patl_0249 PF01894 Uncharacterised protein family UPF0047 Patl_0250 PF00691 OmpA family Patl_0251 PF00772 DnaB-like helicase N terminal domain Patl_0251 PF03796 DnaB-like helicase C terminal domain Patl_0252 PF00271 Helicase conserved C-terminal domain Patl_0252 PF00570 HRDC domain Patl_0252 PF00270 DEAD/DEAH box helicase Patl_0252 PF16124 RecQ zinc-binding Patl_0252 PF09382 RQC domain Patl_0253 PF03061 Thioesterase superfamily Patl_0254 PF01152 Bacterial-like globin Patl_0256 PF03707 Bacterial signalling protein N terminal repeat Patl_0256 PF00563 EAL domain Patl_0256 PF00990 Diguanylate cyclase, GGDEF domain Patl_0260 PF17243 POTRA domain TamA domain 1 Patl_0260 PF01103 Surface antigen Patl_0261 PF04357 TamB, inner membrane protein subunit of TAM complex Patl_0262 PF03448 MgtE intracellular N domain Patl_0262 PF01769 Divalent cation transporter Patl_0262 PF00571 CBS domain Patl_0263 PF07043 Protein of unknown function (DUF1328) Patl_0265 PF00990 Diguanylate cyclase, GGDEF domain Patl_0265 PF00072 Response regulator receiver domain Patl_0266 PF02844 Phosphoribosylglycinamide synthetase, N domain Patl_0266 PF02843 Phosphoribosylglycinamide synthetase, C domain Patl_0266 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Patl_0268 PF02142 MGS-like domain Patl_0268 PF01808 AICARFT/IMPCHase bienzyme Patl_0269 PF02954 Bacterial regulatory protein, Fis family Patl_0270 PF01207 Dihydrouridine synthase (Dus) Patl_0272 PF00085 Thioredoxin Patl_0276 PF00135 Carboxylesterase family Patl_0282 PF00005 ABC transporter Patl_0282 PF00664 ABC transporter transmembrane region Patl_0282 PF03412 Peptidase C39 family Patl_0286 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Patl_0286 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Patl_0291 PF13378 Enolase C-terminal domain-like Patl_0291 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Patl_0292 PF00356 Bacterial regulatory proteins, lacI family Patl_0293 PF02028 BCCT, betaine/carnitine/choline family transporter Patl_0295 PF07715 TonB-dependent Receptor Plug Domain Patl_0295 PF00593 TonB dependent receptor Patl_0299 PF02492 CobW/HypB/UreG, nucleotide-binding domain Patl_0299 PF07683 Cobalamin synthesis protein cobW C-terminal domain Patl_0301 PF02649 Type I GTP cyclohydrolase folE2 Patl_0306 PF00005 ABC transporter Patl_0310 PF00753 Metallo-beta-lactamase superfamily Patl_0310 PF16123 Hydroxyacylglutathione hydrolase C-terminus Patl_0311 PF07660 Secretin and TonB N terminus short domain Patl_0311 PF00593 TonB dependent receptor Patl_0311 PF07715 TonB-dependent Receptor Plug Domain Patl_0315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_0315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_0315 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_0317 PF01039 Carboxyl transferase domain Patl_0318 PF00378 Enoyl-CoA hydratase/isomerase Patl_0319 PF02785 Biotin carboxylase C-terminal domain Patl_0319 PF00364 Biotin-requiring enzyme Patl_0319 PF00289 Biotin carboxylase, N-terminal domain Patl_0319 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Patl_0322 PF00501 AMP-binding enzyme Patl_0322 PF13193 AMP-binding enzyme C-terminal domain Patl_0334 PF00593 TonB dependent receptor Patl_0334 PF07715 TonB-dependent Receptor Plug Domain Patl_0335 PF00474 Sodium:solute symporter family Patl_0336 PF05161 MOFRL family Patl_0336 PF13660 Domain of unknown function (DUF4147) Patl_0338 PF02112 cAMP phosphodiesterases class-II Patl_0340 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase Patl_0341 PF02602 Uroporphyrinogen-III synthase HemD Patl_0342 PF03900 Porphobilinogen deaminase, C-terminal domain Patl_0342 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Patl_0346 PF01491 Frataxin-like domain Patl_0347 PF00625 Guanylate kinase Patl_0348 PF01192 RNA polymerase Rpb6 Patl_0349 PF02824 TGS domain Patl_0349 PF13291 ACT domain Patl_0349 PF04607 Region found in RelA / SpoT proteins Patl_0350 PF01042 Endoribonuclease L-PSP Patl_0351 PF12105 SpoU, rRNA methylase, C-terminal Patl_0351 PF00588 SpoU rRNA Methylase family Patl_0353 PF00270 DEAD/DEAH box helicase Patl_0353 PF00271 Helicase conserved C-terminal domain Patl_0353 PF17191 RecG wedge domain Patl_0354 PF04445 Putative SAM-dependent methyltransferase Patl_0355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Patl_0356 PF08534 Redoxin Patl_0356 PF00462 Glutaredoxin Patl_0358 PF00005 ABC transporter Patl_0359 PF00196 Bacterial regulatory proteins, luxR family Patl_0359 PF03472 Autoinducer binding domain Patl_0361 PF00765 Autoinducer synthase Patl_0373 PF01435 Peptidase family M48 Patl_0377 PF00593 TonB dependent receptor Patl_0377 PF07715 TonB-dependent Receptor Plug Domain Patl_0378 PF00111 2Fe-2S iron-sulfur cluster binding domain Patl_0378 PF00970 Oxidoreductase FAD-binding domain Patl_0378 PF00175 Oxidoreductase NAD-binding domain Patl_0379 PF02910 Fumarate reductase flavoprotein C-term Patl_0379 PF00890 FAD binding domain Patl_0380 PF04060 Putative Fe-S cluster Patl_0383 PF00884 Sulfatase Patl_0385 PF03061 Thioesterase superfamily Patl_0390 PF01066 CDP-alcohol phosphatidyltransferase Patl_0391 PF00005 ABC transporter Patl_0391 PF12857 TOBE-like domain Patl_0392 PF00528 Binding-protein-dependent transport system inner membrane component Patl_0393 PF13416 Bacterial extracellular solute-binding protein Patl_0395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Patl_0395 PF07992 Pyridine nucleotide-disulphide oxidoreductase Patl_0398 PF00360 Phytochrome region Patl_0398 PF01590 GAF domain Patl_0398 PF00563 EAL domain Patl_0398 PF00990 Diguanylate cyclase, GGDEF domain Patl_0400 PF00291 Pyridoxal-phosphate dependent enzyme Patl_0402 PF12894 Anaphase-promoting complex subunit 4 WD40 domain Patl_0402 PF00400 WD domain, G-beta repeat Patl_0403 PF00873 AcrB/AcrD/AcrF family Patl_0404 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Patl_0405 PF04389 Peptidase family M28 Patl_0407 PF02594 Uncharacterised ACR, YggU family COG1872 Patl_0409 PF01037 Lrp/AsnC ligand binding domain Patl_0410 PF03301 Tryptophan 2,3-dioxygenase Patl_0411 PF00266 Aminotransferase class-V Patl_0414 PF00593 TonB dependent receptor Patl_0414 PF07715 TonB-dependent Receptor Plug Domain Patl_0415 PF00970 Oxidoreductase FAD-binding domain Patl_0415 PF00175 Oxidoreductase NAD-binding domain Patl_0417 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Patl_0417 PF10414 Sirohaem synthase dimerisation region Patl_0418 PF03880 DbpA RNA binding domain Patl_0418 PF00270 DEAD/DEAH box helicase Patl_0418 PF00271 Helicase conserved C-terminal domain Patl_0420 PF00085 Thioredoxin Patl_0423 PF00360 Phytochrome region Patl_0423 PF00512 His Kinase A (phospho-acceptor) domain Patl_0423 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_0423 PF01590 GAF domain Patl_0423 PF08446 PAS fold Patl_0424 PF00072 Response regulator receiver domain Patl_0425 PF00465 Iron-containing alcohol dehydrogenase Patl_0426 PF03061 Thioesterase superfamily Patl_0428 PF00037 4Fe-4S binding domain Patl_0428 PF11953 Domain of unknown function (DUF3470) Patl_0430 PF02321 Outer membrane efflux protein Patl_0431 PF00293 NUDIX domain Patl_0432 PF06853 Protein of unknown function (DUF1249) Patl_0433 PF00149 Calcineurin-like phosphoesterase Patl_0434 PF05728 Uncharacterised protein family (UPF0227) Patl_0435 PF01751 Toprim domain Patl_0435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_0435 PF00986 DNA gyrase B subunit, carboxyl terminus Patl_0435 PF00204 DNA gyrase B Patl_0437 PF00893 Small Multidrug Resistance protein Patl_0440 PF04055 Radical SAM superfamily Patl_0442 PF00152 tRNA synthetases class II (D, K and N) Patl_0443 PF00990 Diguanylate cyclase, GGDEF domain Patl_0446 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Patl_0447 PF05175 Methyltransferase small domain Patl_0449 PF01722 BolA-like protein Patl_0450 PF01679 Proteolipid membrane potential modulator Patl_0451 PF12241 Trans-2-enoyl-CoA reductase catalytic region Patl_0451 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Patl_0451 PF07055 Enoyl reductase FAD binding domain Patl_0452 PF11973 NQRA C-terminal domain Patl_0452 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Patl_0453 PF03116 NQR2, RnfD, RnfE family Patl_0454 PF04205 FMN-binding domain Patl_0455 PF02508 Rnf-Nqr subunit, membrane protein Patl_0456 PF02508 Rnf-Nqr subunit, membrane protein Patl_0457 PF00111 2Fe-2S iron-sulfur cluster binding domain Patl_0457 PF00970 Oxidoreductase FAD-binding domain Patl_0457 PF00175 Oxidoreductase NAD-binding domain Patl_0458 PF02424 ApbE family Patl_0459 PF04400 (Na+)-NQR maturation NqrM Patl_0460 PF11798 IMS family HHH motif Patl_0460 PF11799 impB/mucB/samB family C-terminal domain Patl_0460 PF00817 impB/mucB/samB family Patl_0462 PF00753 Metallo-beta-lactamase superfamily Patl_0464 PF00009 Elongation factor Tu GTP binding domain Patl_0464 PF03144 Elongation factor Tu domain 2 Patl_0464 PF00679 Elongation factor G C-terminus Patl_0464 PF14492 Elongation Factor G, domain II Patl_0464 PF03764 Elongation factor G, domain IV Patl_0465 PF00990 Diguanylate cyclase, GGDEF domain Patl_0466 PF01979 Amidohydrolase family Patl_0467 PF00437 Type II/IV secretion system protein Patl_0468 PF00338 Ribosomal protein S10p/S20e Patl_0469 PF00297 Ribosomal protein L3 Patl_0470 PF00573 Ribosomal protein L4/L1 family Patl_0471 PF00276 Ribosomal protein L23 Patl_0472 PF00181 Ribosomal Proteins L2, RNA binding domain Patl_0472 PF03947 Ribosomal Proteins L2, C-terminal domain Patl_0473 PF00203 Ribosomal protein S19 Patl_0474 PF00237 Ribosomal protein L22p/L17e Patl_0475 PF07650 KH domain Patl_0475 PF00189 Ribosomal protein S3, C-terminal domain Patl_0476 PF00252 Ribosomal protein L16p/L10e Patl_0477 PF00831 Ribosomal L29 protein Patl_0478 PF00366 Ribosomal protein S17 Patl_0479 PF00595 PDZ domain Patl_0479 PF03572 Peptidase family S41 Patl_0481 PF06628 Catalase-related immune-responsive Patl_0481 PF00199 Catalase Patl_0482 PF04403 Paraquat-inducible protein A Patl_0486 PF01842 ACT domain Patl_0486 PF00551 Formyl transferase Patl_0488 PF08482 ATP-dependent helicase C-terminal Patl_0488 PF00271 Helicase conserved C-terminal domain Patl_0488 PF00270 DEAD/DEAH box helicase Patl_0488 PF04408 Helicase associated domain (HA2) Patl_0489 PF14814 Bifunctional transglycosylase second domain Patl_0489 PF00905 Penicillin binding protein transpeptidase domain Patl_0489 PF00912 Transglycosylase Patl_0491 PF00543 Nitrogen regulatory protein P-II Patl_0492 PF00909 Ammonium Transporter Family Patl_0493 PF04261 Dyp-type peroxidase family Patl_0494 PF00211 Adenylate and Guanylate cyclase catalytic domain Patl_0494 PF00672 HAMP domain Patl_0495 PF00202 Aminotransferase class-III Patl_0496 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Patl_0496 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Patl_0500 PF01037 Lrp/AsnC ligand binding domain Patl_0507 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Patl_0507 PF00072 Response regulator receiver domain Patl_0507 PF00672 HAMP domain Patl_0507 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_0507 PF00512 His Kinase A (phospho-acceptor) domain Patl_0507 PF01627 Hpt domain Patl_0508 PF07995 Glucose / Sorbosone dehydrogenase Patl_0509 PF03989 DNA gyrase C-terminal domain, beta-propeller Patl_0509 PF00521 DNA gyrase/topoisomerase IV, subunit A Patl_0510 PF00135 Carboxylesterase family Patl_0512 PF01037 Lrp/AsnC ligand binding domain Patl_0513 PF01551 Peptidase family M23 Patl_0513 PF04225 Opacity-associated protein A LysM-like domain Patl_0514 PF00579 tRNA synthetases class I (W and Y) Patl_0518 PF01048 Phosphorylase superfamily Patl_0520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Patl_0520 PF00672 HAMP domain Patl_0520 PF17200 Single Cache domain 2 Patl_0521 PF13193 AMP-binding enzyme C-terminal domain Patl_0521 PF00501 AMP-binding enzyme Patl_0521 PF16177 Acetyl-coenzyme A synthetase N-terminus Patl_0522 PF00196 Bacterial regulatory proteins, luxR family Patl_0522 PF00072 Response regulator receiver domain Patl_0523 PF00072 Response regulator receiver domain Patl_0523 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_0523 PF09456 RcsC Alpha-Beta-Loop (ABL) Patl_0523 PF00512 His Kinase A (phospho-acceptor) domain Patl_0525 PF00474 Sodium:solute symporter family Patl_0527 PF00563 EAL domain Patl_0527 PF00990 Diguanylate cyclase, GGDEF domain Patl_0527 PF03707 Bacterial signalling protein N terminal repeat Patl_0528 PF01380 SIS domain Patl_0528 PF00571 CBS domain Patl_0532 PF01773 Na+ dependent nucleoside transporter N-terminus Patl_0532 PF07670 Nucleoside recognition Patl_0532 PF07662 Na+ dependent nucleoside transporter C-terminus Patl_0533 PF00485 Phosphoribulokinase / Uridine kinase family Patl_0536 PF00593 TonB dependent receptor Patl_0538 PF02863 Arginine repressor, C-terminal domain Patl_0538 PF01316 Arginine repressor, DNA binding domain Patl_0539 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Patl_0539 PF00056 lactate/malate dehydrogenase, NAD binding domain Patl_0544 PF01521 Iron-sulphur cluster biosynthesis Patl_0546 PF00654 Voltage gated chloride channel Patl_0548 PF01227 GTP cyclohydrolase I Patl_0549 PF01048 Phosphorylase superfamily Patl_0550 PF01709 Transcriptional regulator Patl_0551 PF03969 AFG1-like ATPase Patl_0553 PF13180 PDZ domain Patl_0553 PF00595 PDZ domain Patl_0554 PF13180 PDZ domain Patl_0555 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Patl_0556 PF01722 BolA-like protein Patl_0558 PF05494 MlaC protein Patl_0559 PF02470 MlaD protein Patl_0560 PF02405 Permease MlaE Patl_0561 PF00005 ABC transporter Patl_0562 PF01699 Sodium/calcium exchanger protein Patl_0563 PF01380 SIS domain Patl_0563 PF00571 CBS domain Patl_0567 PF12399 Branched-chain amino acid ATP-binding cassette transporter Patl_0567 PF00005 ABC transporter Patl_0568 PF04963 Sigma-54 factor, core binding domain Patl_0568 PF00309 Sigma-54 factor, Activator interacting domain (AID) Patl_0568 PF04552 Sigma-54, DNA binding domain Patl_0569 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Patl_0570 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Patl_0571 PF03668 P-loop ATPase protein family Patl_0572 PF00381 PTS HPr component phosphorylation site Patl_0573 PF01223 DNA/RNA non-specific endonuclease Patl_0574 PF02424 ApbE family Patl_0577 PF00578 AhpC/TSA family Patl_0578 PF01483 Proprotein convertase P-domain Patl_0578 PF04389 Peptidase family M28 Patl_0580 PF08212 Lipocalin-like domain Patl_0582 PF03831 PhnA domain Patl_0582 PF08274 PhnA Zinc-Ribbon Patl_0584 PF01979 Amidohydrolase family Patl_0588 PF03880 DbpA RNA binding domain Patl_0588 PF00270 DEAD/DEAH box helicase Patl_0588 PF00271 Helicase conserved C-terminal domain Patl_0590 PF03737 Aldolase/RraA Patl_0591 PF00005 ABC transporter Patl_0591 PF00664 ABC transporter transmembrane region Patl_0592 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Patl_0593 PF02357 Transcription termination factor nusG Patl_0593 PF00467 KOW motif Patl_0594 PF00298 Ribosomal protein L11, RNA binding domain Patl_0594 PF03946 Ribosomal protein L11, N-terminal domain Patl_0595 PF00687 Ribosomal protein L1p/L10e family Patl_0596 PF00466 Ribosomal protein L10 Patl_0597 PF00542 Ribosomal protein L7/L12 C-terminal domain Patl_0597 PF16320 Ribosomal protein L7/L12 dimerisation domain Patl_0598 PF04563 RNA polymerase beta subunit Patl_0598 PF04561 RNA polymerase Rpb2, domain 2 Patl_0598 PF04565 RNA polymerase Rpb2, domain 3 Patl_0598 PF10385 RNA polymerase beta subunit external 1 domain Patl_0598 PF04560 RNA polymerase Rpb2, domain 7 Patl_0598 PF00562 RNA polymerase Rpb2, domain 6 Patl_0599 PF04983 RNA polymerase Rpb1, domain 3 Patl_0599 PF04997 RNA polymerase Rpb1, domain 1 Patl_0599 PF00623 RNA polymerase Rpb1, domain 2 Patl_0599 PF04998 RNA polymerase Rpb1, domain 5 Patl_0599 PF05000 RNA polymerase Rpb1, domain 4 Patl_0600 PF00164 Ribosomal protein S12/S23 Patl_0601 PF00177 Ribosomal protein S7p/S5e Patl_0602 PF03144 Elongation factor Tu domain 2 Patl_0602 PF00679 Elongation factor G C-terminus Patl_0602 PF14492 Elongation Factor G, domain II Patl_0602 PF03764 Elongation factor G, domain IV Patl_0602 PF00009 Elongation factor Tu GTP binding domain Patl_0603 PF03143 Elongation factor Tu C-terminal domain Patl_0603 PF03144 Elongation factor Tu domain 2 Patl_0603 PF00009 Elongation factor Tu GTP binding domain Patl_0604 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Patl_0604 PF00672 HAMP domain Patl_0604 PF02743 Cache domain Patl_0605 PF09186 Domain of unknown function (DUF1949) Patl_0605 PF01205 Uncharacterized protein family UPF0029 Patl_0606 PF00311 Phosphoenolpyruvate carboxylase Patl_0607 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Patl_0607 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Patl_0608 PF01740 STAS domain Patl_0608 PF00916 Sulfate permease family Patl_0610 PF00999 Sodium/hydrogen exchanger family Patl_0611 PF12697 Alpha/beta hydrolase family Patl_0612 PF01914 MarC family integral membrane protein Patl_0615 PF17158 Membrane-associated sensor, integral membrane domain Patl_0615 PF00990 Diguanylate cyclase, GGDEF domain Patl_0616 PF01053 Cys/Met metabolism PLP-dependent enzyme Patl_0617 PF00270 DEAD/DEAH box helicase Patl_0617 PF00271 Helicase conserved C-terminal domain Patl_0617 PF00570 HRDC domain Patl_0617 PF16124 RecQ zinc-binding Patl_0617 PF09382 RQC domain Patl_0618 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Patl_0618 PF00529 HlyD membrane-fusion protein of T1SS Patl_0619 PF00873 AcrB/AcrD/AcrF family Patl_0624 PF00205 Thiamine pyrophosphate enzyme, central domain Patl_0624 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Patl_0624 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Patl_0625 PF10369 Small subunit of acetolactate synthase Patl_0626 PF00265 Thymidine kinase Patl_0627 PF03707 Bacterial signalling protein N terminal repeat Patl_0627 PF00563 EAL domain Patl_0627 PF00990 Diguanylate cyclase, GGDEF domain Patl_0629 PF03594 Benzoate membrane transport protein Patl_0630 PF01758 Sodium Bile acid symporter family Patl_0632 PF00106 short chain dehydrogenase Patl_0635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_0635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_0635 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_0636 PF03466 LysR substrate binding domain Patl_0636 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_0637 PF00909 Ammonium Transporter Family Patl_0638 PF05922 Peptidase inhibitor I9 Patl_0638 PF00082 Subtilase family Patl_0643 PF08521 Two-component sensor kinase N-terminal Patl_0643 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_0643 PF00512 His Kinase A (phospho-acceptor) domain Patl_0644 PF00486 Transcriptional regulatory protein, C terminal Patl_0644 PF00072 Response regulator receiver domain Patl_0645 PF01769 Divalent cation transporter Patl_0645 PF03448 MgtE intracellular N domain Patl_0645 PF00571 CBS domain Patl_0646 PF00892 EamA-like transporter family Patl_0647 PF08544 GHMP kinases C terminal Patl_0647 PF00288 GHMP kinases N terminal domain Patl_0647 PF10509 Galactokinase galactose-binding signature Patl_0648 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Patl_0648 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Patl_0649 PF00171 Aldehyde dehydrogenase family Patl_0650 PF04958 Arginine N-succinyltransferase beta subunit Patl_0651 PF00202 Aminotransferase class-III Patl_0653 PF00117 Glutamine amidotransferase class-I Patl_0654 PF01012 Electron transfer flavoprotein domain Patl_0655 PF01012 Electron transfer flavoprotein domain Patl_0655 PF00766 Electron transfer flavoprotein FAD-binding domain Patl_0656 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_0656 PF12806 Acetyl-CoA dehydrogenase C-terminal like Patl_0656 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_0656 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_0657 PF12833 Helix-turn-helix domain Patl_0658 PF00579 tRNA synthetases class I (W and Y) Patl_0659 PF00834 Ribulose-phosphate 3 epimerase family Patl_0663 PF02086 D12 class N6 adenine-specific DNA methyltransferase Patl_0665 PF01761 3-dehydroquinate synthase Patl_0666 PF01202 Shikimate kinase Patl_0667 PF00263 Bacterial type II and III secretion system protein Patl_0667 PF07660 Secretin and TonB N terminus short domain Patl_0667 PF11741 AMIN domain Patl_0667 PF03958 Bacterial type II/III secretion system short domain Patl_0688 PF05840 Bacteriophage replication gene A protein (GPA) Patl_0723 PF17092 Penicillin-binding protein OB-like domain Patl_0723 PF00912 Transglycosylase Patl_0723 PF00905 Penicillin binding protein transpeptidase domain Patl_0724 PF03949 Malic enzyme, NAD binding domain Patl_0724 PF00390 Malic enzyme, N-terminal domain Patl_0727 PF00145 C-5 cytosine-specific DNA methylase Patl_0729 PF00004 ATPase family associated with various cellular activities (AAA) Patl_0729 PF17862 AAA+ lid domain Patl_0729 PF01434 Peptidase family M41 Patl_0730 PF00589 Phage integrase family Patl_0730 PF02899 Phage integrase, N-terminal SAM-like domain Patl_0732 PF00580 UvrD/REP helicase N-terminal domain Patl_0732 PF13361 UvrD-like helicase C-terminal domain Patl_0735 PF13426 PAS domain Patl_0735 PF00512 His Kinase A (phospho-acceptor) domain Patl_0735 PF00672 HAMP domain Patl_0735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_0736 PF00440 Bacterial regulatory proteins, tetR family Patl_0738 PF00873 AcrB/AcrD/AcrF family Patl_0739 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Patl_0742 PF02566 OsmC-like protein Patl_0744 PF13533 Biotin-lipoyl like Patl_0745 PF07690 Major Facilitator Superfamily Patl_0746 PF01641 SelR domain Patl_0746 PF01625 Peptide methionine sulfoxide reductase Patl_0747 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Patl_0748 PF16653 Saccharopine dehydrogenase C-terminal domain Patl_0748 PF03435 Saccharopine dehydrogenase NADP binding domain Patl_0751 PF04973 Nicotinamide mononucleotide transporter Patl_0754 PF00990 Diguanylate cyclase, GGDEF domain Patl_0754 PF00563 EAL domain Patl_0754 PF01590 GAF domain Patl_0754 PF00360 Phytochrome region Patl_0757 PF12795 Mechanosensitive ion channel porin domain Patl_0757 PF12794 Mechanosensitive ion channel inner membrane domain 1 Patl_0757 PF00924 Mechanosensitive ion channel Patl_0758 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Patl_0761 PF13191 AAA ATPase domain Patl_0761 PF00211 Adenylate and Guanylate cyclase catalytic domain Patl_0765 PF13188 PAS domain Patl_0765 PF00072 Response regulator receiver domain Patl_0765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_0765 PF00512 His Kinase A (phospho-acceptor) domain Patl_0765 PF08448 PAS fold Patl_0766 PF06628 Catalase-related immune-responsive Patl_0766 PF00199 Catalase Patl_0766 PF18011 C-terminal domain found in long catalases Patl_0767 PF00593 TonB dependent receptor Patl_0767 PF07715 TonB-dependent Receptor Plug Domain Patl_0768 PF13181 Tetratricopeptide repeat Patl_0769 PF00106 short chain dehydrogenase Patl_0770 PF03480 Bacterial extracellular solute-binding protein, family 7 Patl_0772 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Patl_0773 PF12833 Helix-turn-helix domain Patl_0776 PF01131 DNA topoisomerase Patl_0776 PF01751 Toprim domain Patl_0779 PF01232 Mannitol dehydrogenase Rossmann domain Patl_0779 PF08125 Mannitol dehydrogenase C-terminal domain Patl_0780 PF00012 Hsp70 protein Patl_0785 PF07715 TonB-dependent Receptor Plug Domain Patl_0785 PF00593 TonB dependent receptor Patl_0790 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Patl_0791 PF07719 Tetratricopeptide repeat Patl_0791 PF13181 Tetratricopeptide repeat Patl_0793 PF02445 Quinolinate synthetase A protein Patl_0794 PF13419 Haloacid dehalogenase-like hydrolase Patl_0795 PF16347 Domain of unknown function (DUF4976) Patl_0795 PF00884 Sulfatase Patl_0797 PF08240 Alcohol dehydrogenase GroES-like domain Patl_0797 PF00107 Zinc-binding dehydrogenase Patl_0798 PF04909 Amidohydrolase Patl_0799 PF00248 Aldo/keto reductase family Patl_0800 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Patl_0800 PF08666 SAF domain Patl_0801 PF07690 Major Facilitator Superfamily Patl_0803 PF04820 Tryptophan halogenase Patl_0804 PF00703 Glycosyl hydrolases family 2 Patl_0804 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Patl_0804 PF16355 Domain of unknown function (DUF4982) Patl_0804 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Patl_0804 PF02837 Glycosyl hydrolases family 2, sugar binding domain Patl_0805 PF00722 Glycosyl hydrolases family 16 Patl_0819 PF16385 Domain of unknown function Patl_0819 PF00884 Sulfatase Patl_0820 PF00884 Sulfatase Patl_0821 PF16353 Domain of unknown function(DUF4981) Patl_0821 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Patl_0821 PF02837 Glycosyl hydrolases family 2, sugar binding domain Patl_0821 PF02929 Beta galactosidase small chain Patl_0821 PF00703 Glycosyl hydrolases family 2 Patl_0824 PF00722 Glycosyl hydrolases family 16 Patl_0825 PF07691 PA14 domain Patl_0825 PF01915 Glycosyl hydrolase family 3 C-terminal domain Patl_0825 PF00933 Glycosyl hydrolase family 3 N terminal domain Patl_0825 PF14310 Fibronectin type III-like domain Patl_0826 PF00884 Sulfatase Patl_0829 PF00884 Sulfatase Patl_0832 PF16355 Domain of unknown function (DUF4982) Patl_0832 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Patl_0832 PF00703 Glycosyl hydrolases family 2 Patl_0832 PF02837 Glycosyl hydrolases family 2, sugar binding domain Patl_0832 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Patl_0834 PF08125 Mannitol dehydrogenase C-terminal domain Patl_0834 PF01232 Mannitol dehydrogenase Rossmann domain Patl_0835 PF00474 Sodium:solute symporter family Patl_0836 PF00294 pfkB family carbohydrate kinase Patl_0837 PF00135 Carboxylesterase family Patl_0839 PF18206 Porphyranase catalytic subdomain 1 Patl_0839 PF02018 Carbohydrate binding domain Patl_0839 PF18040 beta porphyranase A C-terminal Patl_0842 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain Patl_0842 PF04616 Glycosyl hydrolases family 43 Patl_0844 PF00355 Rieske [2Fe-2S] domain Patl_0846 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_0846 PF03466 LysR substrate binding domain Patl_0850 PF08240 Alcohol dehydrogenase GroES-like domain Patl_0850 PF00107 Zinc-binding dehydrogenase Patl_0852 PF00355 Rieske [2Fe-2S] domain Patl_0853 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_0853 PF03466 LysR substrate binding domain Patl_0855 PF04199 Putative cyclase Patl_0857 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Patl_0859 PF01494 FAD binding domain Patl_0865 PF00593 TonB dependent receptor Patl_0865 PF07715 TonB-dependent Receptor Plug Domain Patl_0866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_0866 PF03466 LysR substrate binding domain Patl_0867 PF00355 Rieske [2Fe-2S] domain Patl_0868 PF07681 DoxX Patl_0869 PF00111 2Fe-2S iron-sulfur cluster binding domain Patl_0869 PF00175 Oxidoreductase NAD-binding domain Patl_0870 PF00884 Sulfatase Patl_0871 PF04954 Siderophore-interacting protein Patl_0871 PF08021 Siderophore-interacting FAD-binding domain Patl_0872 PF00043 Glutathione S-transferase, C-terminal domain Patl_0872 PF02798 Glutathione S-transferase, N-terminal domain Patl_0874 PF00135 Carboxylesterase family Patl_0875 PF07690 Major Facilitator Superfamily Patl_0876 PF12706 Beta-lactamase superfamily domain Patl_0880 PF00722 Glycosyl hydrolases family 16 Patl_0881 PF00884 Sulfatase Patl_0888 PF00884 Sulfatase Patl_0888 PF16347 Domain of unknown function (DUF4976) Patl_0889 PF00884 Sulfatase Patl_0892 PF01134 Glucose inhibited division protein A Patl_0892 PF13932 GidA associated domain Patl_0894 PF00392 Bacterial regulatory proteins, gntR family Patl_0894 PF07729 FCD domain Patl_0895 PF00884 Sulfatase Patl_0896 PF00171 Aldehyde dehydrogenase family Patl_0897 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Patl_0897 PF13378 Enolase C-terminal domain-like Patl_0898 PF05035 2-keto-3-deoxy-galactonokinase Patl_0899 PF01081 KDPG and KHG aldolase Patl_0900 PF00083 Sugar (and other) transporter Patl_0901 PF00392 Bacterial regulatory proteins, gntR family Patl_0901 PF07729 FCD domain Patl_0905 PF00376 MerR family regulatory protein Patl_0905 PF09278 MerR, DNA binding Patl_0910 PF07944 Beta-L-arabinofuranosidase, GH127 Patl_0921 PF08267 Cobalamin-independent synthase, N-terminal domain Patl_0921 PF01717 Cobalamin-independent synthase, Catalytic domain Patl_0922 PF03060 Nitronate monooxygenase Patl_0925 PF05209 Septum formation inhibitor MinC, N-terminal domain Patl_0925 PF03775 Septum formation inhibitor MinC, C-terminal domain Patl_0926 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Patl_0927 PF03776 Septum formation topological specificity factor MinE Patl_0929 PF06167 Glucose-regulated metallo-peptidase M90 Patl_0930 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Patl_0930 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Patl_0932 PF07715 TonB-dependent Receptor Plug Domain Patl_0932 PF00593 TonB dependent receptor Patl_0934 PF16868 NMT1-like family Patl_0935 PF07715 TonB-dependent Receptor Plug Domain Patl_0935 PF00593 TonB dependent receptor Patl_0939 PF00593 TonB dependent receptor Patl_0939 PF07715 TonB-dependent Receptor Plug Domain Patl_0940 PF07660 Secretin and TonB N terminus short domain Patl_0940 PF07715 TonB-dependent Receptor Plug Domain Patl_0940 PF00593 TonB dependent receptor Patl_0945 PF01925 Sulfite exporter TauE/SafE Patl_0946 PF00753 Metallo-beta-lactamase superfamily Patl_0948 PF00171 Aldehyde dehydrogenase family Patl_0949 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_0949 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_0949 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_0950 PF00378 Enoyl-CoA hydratase/isomerase Patl_0950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Patl_0950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Patl_0951 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Patl_0951 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Patl_0956 PF13230 Glutamine amidotransferases class-II Patl_0961 PF03793 PASTA domain Patl_0961 PF00069 Protein kinase domain Patl_0966 PF03435 Saccharopine dehydrogenase NADP binding domain Patl_0967 PF07715 TonB-dependent Receptor Plug Domain Patl_0967 PF00593 TonB dependent receptor Patl_0968 PF00224 Pyruvate kinase, barrel domain Patl_0968 PF02887 Pyruvate kinase, alpha/beta domain Patl_0969 PF01380 SIS domain Patl_0969 PF01418 Helix-turn-helix domain, rpiR family Patl_0970 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Patl_0970 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Patl_0971 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Patl_0972 PF00920 Dehydratase family Patl_0973 PF02685 Glucokinase Patl_0974 PF01081 KDPG and KHG aldolase Patl_0977 PF00696 Amino acid kinase family Patl_0977 PF00583 Acetyltransferase (GNAT) family Patl_0978 PF00206 Lyase Patl_0978 PF14698 Argininosuccinate lyase C-terminal Patl_0979 PF00764 Arginosuccinate synthase Patl_0980 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Patl_0980 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Patl_0981 PF00696 Amino acid kinase family Patl_0982 PF02774 Semialdehyde dehydrogenase, dimerisation domain Patl_0982 PF01118 Semialdehyde dehydrogenase, NAD binding domain Patl_0983 PF07687 Peptidase dimerisation domain Patl_0983 PF01546 Peptidase family M20/M25/M40 Patl_0985 PF02142 MGS-like domain Patl_0987 PF00486 Transcriptional regulatory protein, C terminal Patl_0987 PF00072 Response regulator receiver domain Patl_0988 PF00672 HAMP domain Patl_0988 PF16527 Two-component sensor protein CpxA, periplasmic domain Patl_0988 PF00512 His Kinase A (phospho-acceptor) domain Patl_0988 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_0989 PF12146 Serine aminopeptidase, S33 Patl_0990 PF00588 SpoU rRNA Methylase family Patl_0991 PF00175 Oxidoreductase NAD-binding domain Patl_0991 PF00970 Oxidoreductase FAD-binding domain Patl_0993 PF08238 Sel1 repeat Patl_0994 PF08461 Ribonuclease R winged-helix domain Patl_0994 PF00575 S1 RNA binding domain Patl_0994 PF00773 RNB domain Patl_0994 PF17876 Cold shock domain Patl_0994 PF08206 Ribonuclease B OB domain Patl_0995 PF08032 RNA 2'-O ribose methyltransferase substrate binding Patl_0995 PF00588 SpoU rRNA Methylase family Patl_0997 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_0997 PF03466 LysR substrate binding domain Patl_0998 PF00501 AMP-binding enzyme Patl_0999 PF00238 Ribosomal protein L14p/L23e Patl_1000 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Patl_1000 PF00467 KOW motif Patl_1001 PF00673 ribosomal L5P family C-terminus Patl_1001 PF00281 Ribosomal protein L5 Patl_1002 PF00253 Ribosomal protein S14p/S29e Patl_1003 PF00410 Ribosomal protein S8 Patl_1004 PF00347 Ribosomal protein L6 Patl_1005 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Patl_1006 PF00333 Ribosomal protein S5, N-terminal domain Patl_1006 PF03719 Ribosomal protein S5, C-terminal domain Patl_1007 PF00327 Ribosomal protein L30p/L7e Patl_1008 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Patl_1009 PF00344 SecY translocase Patl_1010 PF00444 Ribosomal protein L36 Patl_1011 PF00416 Ribosomal protein S13/S18 Patl_1012 PF00411 Ribosomal protein S11 Patl_1013 PF01479 S4 domain Patl_1013 PF00163 Ribosomal protein S4/S9 N-terminal domain Patl_1014 PF01000 RNA polymerase Rpb3/RpoA insert domain Patl_1014 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Patl_1014 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Patl_1015 PF01196 Ribosomal protein L17 Patl_1017 PF00881 Nitroreductase family Patl_1018 PF00491 Arginase family Patl_1019 PF01979 Amidohydrolase family Patl_1020 PF07702 UTRA domain Patl_1020 PF00392 Bacterial regulatory proteins, gntR family Patl_1022 PF00221 Aromatic amino acid lyase Patl_1023 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Patl_1025 PF00120 Glutamine synthetase, catalytic domain Patl_1025 PF03951 Glutamine synthetase, beta-Grasp domain Patl_1027 PF00989 PAS fold Patl_1027 PF00512 His Kinase A (phospho-acceptor) domain Patl_1027 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_1028 PF00158 Sigma-54 interaction domain Patl_1028 PF02954 Bacterial regulatory protein, Fis family Patl_1028 PF00072 Response regulator receiver domain Patl_1029 PF00072 Response regulator receiver domain Patl_1030 PF01553 Acyltransferase Patl_1031 PF06877 Regulator of ribonuclease activity B Patl_1033 PF04231 Endonuclease I Patl_1035 PF02225 PA domain Patl_1035 PF13860 FlgD Ig-like domain Patl_1035 PF00082 Subtilase family Patl_1035 PF05922 Peptidase inhibitor I9 Patl_1036 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Patl_1037 PF00873 AcrB/AcrD/AcrF family Patl_1038 PF00140 Sigma-70 factor, region 1.2 Patl_1038 PF03979 Sigma-70 factor, region 1.1 Patl_1038 PF04545 Sigma-70, region 4 Patl_1038 PF04539 Sigma-70 region 3 Patl_1038 PF04546 Sigma-70, non-essential region Patl_1038 PF04542 Sigma-70 region 2 Patl_1039 PF08278 DNA primase DnaG DnaB-binding Patl_1039 PF08275 DNA primase catalytic core, N-terminal domain Patl_1039 PF10410 DnaB-helicase binding domain of primase Patl_1039 PF01807 CHC2 zinc finger Patl_1041 PF01165 Ribosomal protein S21 Patl_1042 PF00814 Glycoprotease family Patl_1043 PF02660 Glycerol-3-phosphate acyltransferase Patl_1044 PF02152 Dihydroneopterin aldolase Patl_1045 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Patl_1046 PF02673 Bacitracin resistance protein BacA Patl_1047 PF01230 HIT domain Patl_1048 PF00990 Diguanylate cyclase, GGDEF domain Patl_1048 PF03707 Bacterial signalling protein N terminal repeat Patl_1048 PF00563 EAL domain Patl_1051 PF04381 Putative exonuclease, RdgC Patl_1052 PF00497 Bacterial extracellular solute-binding proteins, family 3 Patl_1052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_1052 PF00512 His Kinase A (phospho-acceptor) domain Patl_1053 PF00486 Transcriptional regulatory protein, C terminal Patl_1053 PF00072 Response regulator receiver domain Patl_1054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_1054 PF00512 His Kinase A (phospho-acceptor) domain Patl_1054 PF00989 PAS fold Patl_1054 PF11808 Phosphate regulon sensor protein PhoR Patl_1058 PF03239 Iron permease FTR1 family Patl_1059 PF00593 TonB dependent receptor Patl_1059 PF07715 TonB-dependent Receptor Plug Domain Patl_1061 PF01618 MotA/TolQ/ExbB proton channel family Patl_1062 PF01618 MotA/TolQ/ExbB proton channel family Patl_1063 PF02472 Biopolymer transport protein ExbD/TolR Patl_1064 PF03544 Gram-negative bacterial TonB protein C-terminal Patl_1066 PF10417 C-terminal domain of 1-Cys peroxiredoxin Patl_1066 PF00578 AhpC/TSA family Patl_1067 PF07992 Pyridine nucleotide-disulphide oxidoreductase Patl_1067 PF13192 Thioredoxin domain Patl_1069 PF01270 Glycosyl hydrolases family 8 Patl_1070 PF02397 Bacterial sugar transferase Patl_1073 PF02706 Chain length determinant protein Patl_1073 PF13807 G-rich domain on putative tyrosine kinase Patl_1073 PF13614 AAA domain Patl_1079 PF00563 EAL domain Patl_1079 PF00990 Diguanylate cyclase, GGDEF domain Patl_1079 PF03707 Bacterial signalling protein N terminal repeat Patl_1084 PF01757 Acyltransferase family Patl_1085 PF13439 Glycosyltransferase Family 4 Patl_1085 PF00534 Glycosyl transferases group 1 Patl_1087 PF01370 NAD dependent epimerase/dehydratase family Patl_1088 PF03808 Glycosyl transferase WecB/TagA/CpsF family Patl_1089 PF00534 Glycosyl transferases group 1 Patl_1090 PF13439 Glycosyltransferase Family 4 Patl_1090 PF00534 Glycosyl transferases group 1 Patl_1092 PF00535 Glycosyl transferase family 2 Patl_1096 PF01757 Acyltransferase family Patl_1104 PF06969 HemN C-terminal domain Patl_1104 PF04055 Radical SAM superfamily Patl_1107 PF06628 Catalase-related immune-responsive Patl_1107 PF00199 Catalase Patl_1109 PF02554 Carbon starvation protein CstA Patl_1110 PF00593 TonB dependent receptor Patl_1110 PF07715 TonB-dependent Receptor Plug Domain Patl_1113 PF12833 Helix-turn-helix domain Patl_1113 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Patl_1114 PF02817 e3 binding domain Patl_1114 PF00364 Biotin-requiring enzyme Patl_1114 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Patl_1115 PF17831 Pyruvate dehydrogenase E1 component middle domain Patl_1115 PF00456 Transketolase, thiamine diphosphate binding domain Patl_1117 PF00593 TonB dependent receptor Patl_1117 PF07715 TonB-dependent Receptor Plug Domain Patl_1118 PF03390 2-hydroxycarboxylate transporter family Patl_1121 PF03466 LysR substrate binding domain Patl_1121 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1124 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Patl_1125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Patl_1127 PF00970 Oxidoreductase FAD-binding domain Patl_1127 PF00042 Globin Patl_1127 PF00175 Oxidoreductase NAD-binding domain Patl_1128 PF02798 Glutathione S-transferase, N-terminal domain Patl_1129 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1129 PF03466 LysR substrate binding domain Patl_1130 PF00155 Aminotransferase class I and II Patl_1131 PF03186 CobD/Cbib protein Patl_1132 PF00300 Histidine phosphatase superfamily (branch 1) Patl_1133 PF01497 Periplasmic binding protein Patl_1134 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Patl_1134 PF12557 Cob(I)alamin adenosyltransferase N terminal Patl_1135 PF07685 CobB/CobQ-like glutamine amidotransferase domain Patl_1137 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Patl_1138 PF02654 Cobalamin-5-phosphate synthase Patl_1139 PF02277 Phosphoribosyltransferase Patl_1140 PF01032 FecCD transport family Patl_1141 PF00005 ABC transporter Patl_1142 PF07715 TonB-dependent Receptor Plug Domain Patl_1142 PF00593 TonB dependent receptor Patl_1148 PF00593 TonB dependent receptor Patl_1149 PF04397 LytTr DNA-binding domain Patl_1149 PF00072 Response regulator receiver domain Patl_1150 PF06580 Histidine kinase Patl_1150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_1150 PF07694 5TMR of 5TMR-LYT Patl_1151 PF04397 LytTr DNA-binding domain Patl_1151 PF00072 Response regulator receiver domain Patl_1152 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Patl_1152 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Patl_1155 PF08534 Redoxin Patl_1156 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Patl_1156 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Patl_1157 PF07883 Cupin domain Patl_1157 PF12833 Helix-turn-helix domain Patl_1161 PF04337 Protein of unknown function, DUF480 Patl_1162 PF00850 Histone deacetylase domain Patl_1164 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Patl_1166 PF00999 Sodium/hydrogen exchanger family Patl_1166 PF02254 TrkA-N domain Patl_1168 PF13614 AAA domain Patl_1171 PF02397 Bacterial sugar transferase Patl_1178 PF00534 Glycosyl transferases group 1 Patl_1179 PF00535 Glycosyl transferase family 2 Patl_1186 PF00535 Glycosyl transferase family 2 Patl_1190 PF01943 Polysaccharide biosynthesis protein Patl_1191 PF00534 Glycosyl transferases group 1 Patl_1191 PF13439 Glycosyltransferase Family 4 Patl_1193 PF00534 Glycosyl transferases group 1 Patl_1193 PF13579 Glycosyl transferase 4-like domain Patl_1194 PF13537 Glutamine amidotransferase domain Patl_1194 PF00733 Asparagine synthase Patl_1206 PF02698 DUF218 domain Patl_1207 PF01370 NAD dependent epimerase/dehydratase family Patl_1213 PF01274 Malate synthase Patl_1214 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1214 PF03466 LysR substrate binding domain Patl_1215 PF00463 Isocitrate lyase family Patl_1216 PF00245 Alkaline phosphatase Patl_1218 PF01694 Rhomboid family Patl_1219 PF03738 Glutathionylspermidine synthase preATP-grasp Patl_1220 PF06693 Protein of unknown function (DUF1190) Patl_1224 PF04012 PspA/IM30 family Patl_1227 PF02547 Queuosine biosynthesis protein Patl_1228 PF01702 Queuine tRNA-ribosyltransferase Patl_1229 PF02699 Preprotein translocase subunit Patl_1230 PF07549 SecD/SecF GG Motif Patl_1230 PF13721 SecD export protein N-terminal TM region Patl_1230 PF02355 Protein export membrane protein Patl_1231 PF07549 SecD/SecF GG Motif Patl_1231 PF02355 Protein export membrane protein Patl_1232 PF00459 Inositol monophosphatase family Patl_1233 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Patl_1235 PF00588 SpoU rRNA Methylase family Patl_1236 PF00132 Bacterial transferase hexapeptide (six repeats) Patl_1236 PF06426 Serine acetyltransferase, N-terminal Patl_1237 PF02082 Transcriptional regulator Patl_1238 PF00266 Aminotransferase class-V Patl_1239 PF01592 NifU-like N terminal domain Patl_1240 PF01521 Iron-sulphur cluster biosynthesis Patl_1241 PF07743 HSCB C-terminal oligomerisation domain Patl_1242 PF00012 Hsp70 protein Patl_1243 PF00111 2Fe-2S iron-sulfur cluster binding domain Patl_1247 PF01842 ACT domain Patl_1247 PF08335 GlnD PII-uridylyltransferase Patl_1247 PF01966 HD domain Patl_1247 PF01909 Nucleotidyltransferase domain Patl_1248 PF00557 Metallopeptidase family M24 Patl_1249 PF00318 Ribosomal protein S2 Patl_1250 PF00889 Elongation factor TS Patl_1251 PF00696 Amino acid kinase family Patl_1252 PF01765 Ribosome recycling factor Patl_1253 PF01255 Putative undecaprenyl diphosphate synthase Patl_1255 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Patl_1255 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Patl_1255 PF13288 DXP reductoisomerase C-terminal domain Patl_1256 PF17820 PDZ domain Patl_1256 PF02163 Peptidase family M50 Patl_1257 PF07244 Surface antigen variable number repeat Patl_1257 PF01103 Surface antigen Patl_1258 PF03938 Outer membrane protein (OmpH-like) Patl_1259 PF00132 Bacterial transferase hexapeptide (six repeats) Patl_1259 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Patl_1260 PF07977 FabA-like domain Patl_1261 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Patl_1261 PF00132 Bacterial transferase hexapeptide (six repeats) Patl_1262 PF02684 Lipid-A-disaccharide synthetase Patl_1263 PF01351 Ribonuclease HII Patl_1264 PF01336 OB-fold nucleic acid binding domain Patl_1264 PF07733 Bacterial DNA polymerase III alpha NTPase domain Patl_1264 PF14579 Helix-hairpin-helix motif Patl_1264 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Patl_1264 PF02811 PHP domain Patl_1265 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Patl_1266 PF09179 TilS substrate binding domain Patl_1266 PF01171 PP-loop family Patl_1266 PF11734 TilS substrate C-terminal domain Patl_1269 PF00563 EAL domain Patl_1269 PF03707 Bacterial signalling protein N terminal repeat Patl_1269 PF00990 Diguanylate cyclase, GGDEF domain Patl_1270 PF02254 TrkA-N domain Patl_1270 PF02080 TrkA-C domain Patl_1270 PF00999 Sodium/hydrogen exchanger family Patl_1271 PF01039 Carboxyl transferase domain Patl_1272 PF12833 Helix-turn-helix domain Patl_1273 PF07308 Protein of unknown function (DUF1456) Patl_1276 PF03129 Anticodon binding domain Patl_1276 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Patl_1276 PF04073 Aminoacyl-tRNA editing domain Patl_1277 PF01980 tRNA-methyltransferase O Patl_1277 PF18389 TrmO C-terminal domain Patl_1278 PF18429 Domain of unknown function (DUF5609) Patl_1280 PF18073 Rubredoxin metal binding domain Patl_1283 PF03707 Bacterial signalling protein N terminal repeat Patl_1283 PF00563 EAL domain Patl_1283 PF00990 Diguanylate cyclase, GGDEF domain Patl_1284 PF00330 Aconitase family (aconitate hydratase) Patl_1284 PF00694 Aconitase C-terminal domain Patl_1290 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Patl_1290 PF06481 COX Aromatic Rich Motif Patl_1291 PF00115 Cytochrome C and Quinol oxidase polypeptide I Patl_1292 PF00510 Cytochrome c oxidase subunit III Patl_1293 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Patl_1294 PF01040 UbiA prenyltransferase family Patl_1295 PF13426 PAS domain Patl_1295 PF00072 Response regulator receiver domain Patl_1295 PF08448 PAS fold Patl_1295 PF00512 His Kinase A (phospho-acceptor) domain Patl_1295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_1296 PF12848 ABC transporter Patl_1296 PF00005 ABC transporter Patl_1298 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Patl_1298 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Patl_1299 PF00464 Serine hydroxymethyltransferase Patl_1310 PF03477 ATP cone domain Patl_1311 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Patl_1311 PF01872 RibD C-terminal domain Patl_1312 PF00677 Lumazine binding domain Patl_1313 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Patl_1313 PF00925 GTP cyclohydrolase II Patl_1314 PF00885 6,7-dimethyl-8-ribityllumazine synthase Patl_1315 PF01029 NusB family Patl_1316 PF02769 AIR synthase related protein, C-terminal domain Patl_1316 PF00586 AIR synthase related protein, N-terminal domain Patl_1317 PF04608 Phosphatidylglycerophosphatase A Patl_1318 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Patl_1319 PF02780 Transketolase, C-terminal domain Patl_1319 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Patl_1319 PF02779 Transketolase, pyrimidine binding domain Patl_1320 PF00348 Polyprenyl synthetase Patl_1321 PF02609 Exonuclease VII small subunit Patl_1322 PF01618 MotA/TolQ/ExbB proton channel family Patl_1323 PF00691 OmpA family Patl_1323 PF13677 Membrane MotB of proton-channel complex MotA/MotB Patl_1329 PF00106 short chain dehydrogenase Patl_1332 PF04545 Sigma-70, region 4 Patl_1332 PF04542 Sigma-70 region 2 Patl_1334 PF13525 Outer membrane lipoprotein Patl_1335 PF00849 RNA pseudouridylate synthase Patl_1335 PF01479 S4 domain Patl_1337 PF17871 AAA lid domain Patl_1337 PF10431 C-terminal, D2-small domain, of ClpB protein Patl_1337 PF07724 AAA domain (Cdc48 subfamily) Patl_1337 PF00004 ATPase family associated with various cellular activities (AAA) Patl_1337 PF02861 Clp amino terminal domain, pathogenicity island component Patl_1340 PF01066 CDP-alcohol phosphatidyltransferase Patl_1341 PF17176 tRNA-binding domain Patl_1341 PF05127 Helicase Patl_1341 PF13718 GNAT acetyltransferase 2 Patl_1341 PF08351 Domain of unknown function (DUF1726) Patl_1344 PF07660 Secretin and TonB N terminus short domain Patl_1344 PF00593 TonB dependent receptor Patl_1344 PF07715 TonB-dependent Receptor Plug Domain Patl_1349 PF00583 Acetyltransferase (GNAT) family Patl_1354 PF00106 short chain dehydrogenase Patl_1356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1356 PF03466 LysR substrate binding domain Patl_1357 PF08659 KR domain Patl_1357 PF00698 Acyl transferase domain Patl_1357 PF08240 Alcohol dehydrogenase GroES-like domain Patl_1357 PF16197 Ketoacyl-synthetase C-terminal extension Patl_1357 PF00109 Beta-ketoacyl synthase, N-terminal domain Patl_1357 PF02801 Beta-ketoacyl synthase, C-terminal domain Patl_1357 PF14765 Polyketide synthase dehydratase Patl_1357 PF00550 Phosphopantetheine attachment site Patl_1358 PF16658 Class II release factor RF3, C-terminal domain Patl_1358 PF00009 Elongation factor Tu GTP binding domain Patl_1358 PF03144 Elongation factor Tu domain 2 Patl_1359 PF05746 DALR anticodon binding domain Patl_1359 PF03485 Arginyl tRNA synthetase N terminal domain Patl_1359 PF00750 tRNA synthetases class I (R) Patl_1360 PF00472 RF-1 domain Patl_1360 PF03462 PCRF domain Patl_1361 PF01336 OB-fold nucleic acid binding domain Patl_1361 PF00152 tRNA synthetases class II (D, K and N) Patl_1362 PF02558 Ketopantoate reductase PanE/ApbA Patl_1362 PF08546 Ketopantoate reductase PanE/ApbA C terminal Patl_1363 PF00849 RNA pseudouridylate synthase Patl_1365 PF05193 Peptidase M16 inactive domain Patl_1365 PF00675 Insulinase (Peptidase family M16) Patl_1366 PF04262 Glutamate-cysteine ligase Patl_1368 PF13193 AMP-binding enzyme C-terminal domain Patl_1368 PF00501 AMP-binding enzyme Patl_1369 PF02909 Tetracyclin repressor-like, C-terminal domain Patl_1369 PF00440 Bacterial regulatory proteins, tetR family Patl_1370 PF00378 Enoyl-CoA hydratase/isomerase Patl_1371 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Patl_1371 PF07992 Pyridine nucleotide-disulphide oxidoreductase Patl_1372 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1372 PF03466 LysR substrate binding domain Patl_1373 PF00248 Aldo/keto reductase family Patl_1375 PF03714 Bacterial pullanase-associated domain Patl_1375 PF00128 Alpha amylase, catalytic domain Patl_1375 PF02806 Alpha amylase, C-terminal all-beta domain Patl_1377 PF00999 Sodium/hydrogen exchanger family Patl_1389 PF06062 Uncharacterised protein family (UPF0231) Patl_1390 PF01863 Protein of unknown function DUF45 Patl_1391 PF09905 DNA-binding protein VF530 Patl_1392 PF04293 SpoVR like protein Patl_1393 PF04285 Protein of unknown function (DUF444) Patl_1394 PF08298 PrkA AAA domain Patl_1394 PF06798 PrkA serine protein kinase C-terminal domain Patl_1396 PF00462 Glutaredoxin Patl_1397 PF04324 BFD-like [2Fe-2S] binding domain Patl_1398 PF10417 C-terminal domain of 1-Cys peroxiredoxin Patl_1398 PF00578 AhpC/TSA family Patl_1399 PF00929 Exonuclease Patl_1400 PF00691 OmpA family Patl_1400 PF18393 MotY N-terminal domain Patl_1401 PF03009 Glycerophosphoryl diester phosphodiesterase family Patl_1402 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Patl_1403 PF00893 Small Multidrug Resistance protein Patl_1404 PF14600 Cellulose-binding domain Patl_1404 PF00150 Cellulase (glycosyl hydrolase family 5) Patl_1405 PF16884 N-terminal domain of oxidoreductase Patl_1405 PF00107 Zinc-binding dehydrogenase Patl_1408 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_1408 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_1408 PF12806 Acetyl-CoA dehydrogenase C-terminal like Patl_1408 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_1413 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA Patl_1418 PF07729 FCD domain Patl_1418 PF00392 Bacterial regulatory proteins, gntR family Patl_1420 PF00285 Citrate synthase, C-terminal domain Patl_1421 PF00694 Aconitase C-terminal domain Patl_1421 PF00330 Aconitase family (aconitate hydratase) Patl_1422 PF04303 PrpF protein Patl_1423 PF07690 Major Facilitator Superfamily Patl_1424 PF00990 Diguanylate cyclase, GGDEF domain Patl_1425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Patl_1426 PF00107 Zinc-binding dehydrogenase Patl_1426 PF08240 Alcohol dehydrogenase GroES-like domain Patl_1427 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Patl_1428 PF05985 Ethanolamine ammonia-lyase light chain (EutC) Patl_1432 PF00106 short chain dehydrogenase Patl_1434 PF01645 Conserved region in glutamate synthase Patl_1436 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1436 PF03466 LysR substrate binding domain Patl_1437 PF00893 Small Multidrug Resistance protein Patl_1438 PF08240 Alcohol dehydrogenase GroES-like domain Patl_1438 PF00107 Zinc-binding dehydrogenase Patl_1439 PF00756 Putative esterase Patl_1440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1440 PF03466 LysR substrate binding domain Patl_1443 PF07715 TonB-dependent Receptor Plug Domain Patl_1443 PF00593 TonB dependent receptor Patl_1445 PF02667 Short chain fatty acid transporter Patl_1446 PF01062 Bestrophin, RFP-TM, chloride channel Patl_1447 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Patl_1448 PF13417 Glutathione S-transferase, N-terminal domain Patl_1451 PF01810 LysE type translocator Patl_1452 PF01654 Cytochrome bd terminal oxidase subunit I Patl_1453 PF02322 Cytochrome bd terminal oxidase subunit II Patl_1454 PF08173 Membrane bound YbgT-like protein Patl_1455 PF00664 ABC transporter transmembrane region Patl_1455 PF00005 ABC transporter Patl_1456 PF00664 ABC transporter transmembrane region Patl_1456 PF00005 ABC transporter Patl_1462 PF00378 Enoyl-CoA hydratase/isomerase Patl_1467 PF13091 PLD-like domain Patl_1467 PF13396 Phospholipase_D-nuclease N-terminal Patl_1468 PF03372 Endonuclease/Exonuclease/phosphatase family Patl_1471 PF00557 Metallopeptidase family M24 Patl_1478 PF00266 Aminotransferase class-V Patl_1479 PF00682 HMGL-like Patl_1479 PF08502 LeuA allosteric (dimerisation) domain Patl_1480 PF01037 Lrp/AsnC ligand binding domain Patl_1481 PF00465 Iron-containing alcohol dehydrogenase Patl_1483 PF01810 LysE type translocator Patl_1485 PF00155 Aminotransferase class I and II Patl_1486 PF07715 TonB-dependent Receptor Plug Domain Patl_1486 PF00593 TonB dependent receptor Patl_1488 PF01497 Periplasmic binding protein Patl_1489 PF01032 FecCD transport family Patl_1490 PF00005 ABC transporter Patl_1497 PF03466 LysR substrate binding domain Patl_1497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1506 PF00171 Aldehyde dehydrogenase family Patl_1507 PF07690 Major Facilitator Superfamily Patl_1509 PF00392 Bacterial regulatory proteins, gntR family Patl_1509 PF07702 UTRA domain Patl_1512 PF14535 AMP-binding enzyme C-terminal domain Patl_1512 PF00501 AMP-binding enzyme Patl_1513 PF01425 Amidase Patl_1516 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1516 PF03466 LysR substrate binding domain Patl_1518 PF01546 Peptidase family M20/M25/M40 Patl_1520 PF00593 TonB dependent receptor Patl_1520 PF07715 TonB-dependent Receptor Plug Domain Patl_1522 PF08281 Sigma-70, region 4 Patl_1522 PF04542 Sigma-70 region 2 Patl_1524 PF05724 Thiopurine S-methyltransferase (TPMT) Patl_1527 PF00072 Response regulator receiver domain Patl_1527 PF00486 Transcriptional regulatory protein, C terminal Patl_1528 PF00512 His Kinase A (phospho-acceptor) domain Patl_1528 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_1528 PF00672 HAMP domain Patl_1533 PF00512 His Kinase A (phospho-acceptor) domain Patl_1533 PF00072 Response regulator receiver domain Patl_1533 PF13188 PAS domain Patl_1533 PF08448 PAS fold Patl_1533 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_1534 PF02954 Bacterial regulatory protein, Fis family Patl_1534 PF00158 Sigma-54 interaction domain Patl_1534 PF00072 Response regulator receiver domain Patl_1535 PF00989 PAS fold Patl_1535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_1535 PF00512 His Kinase A (phospho-acceptor) domain Patl_1537 PF00072 Response regulator receiver domain Patl_1538 PF00563 EAL domain Patl_1538 PF00990 Diguanylate cyclase, GGDEF domain Patl_1538 PF03707 Bacterial signalling protein N terminal repeat Patl_1539 PF01713 Smr domain Patl_1540 PF05175 Methyltransferase small domain Patl_1541 PF01264 Chorismate synthase Patl_1543 PF00313 'Cold-shock' DNA-binding domain Patl_1544 PF17763 Glutaminase/Asparaginase C-terminal domain Patl_1544 PF00710 Asparaginase, N-terminal Patl_1546 PF01738 Dienelactone hydrolase family Patl_1547 PF06865 Pyrimidine/purine nucleoside phosphorylase Patl_1552 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Patl_1553 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Patl_1553 PF04055 Radical SAM superfamily Patl_1554 PF03099 Biotin/lipoate A/B protein ligase family Patl_1555 PF04359 Protein of unknown function (DUF493) Patl_1556 PF00768 D-alanyl-D-alanine carboxypeptidase Patl_1556 PF07943 Penicillin-binding protein 5, C-terminal domain Patl_1557 PF05036 Sporulation related domain Patl_1557 PF03330 Lytic transglycolase Patl_1558 PF13406 Transglycosylase SLT domain Patl_1559 PF01098 Cell cycle protein Patl_1560 PF03717 Penicillin-binding Protein dimerisation domain Patl_1560 PF00905 Penicillin binding protein transpeptidase domain Patl_1561 PF02590 Predicted SPOUT methyltransferase Patl_1563 PF01467 Cytidylyltransferase-like Patl_1566 PF00133 tRNA synthetases class I (I, L, M and V) Patl_1566 PF13603 Leucyl-tRNA synthetase, Domain 2 Patl_1566 PF08264 Anticodon-binding domain of tRNA Patl_1567 PF13654 AAA domain Patl_1567 PF05362 Lon protease (S16) C-terminal proteolytic domain Patl_1568 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Patl_1569 PF01985 CRS1 / YhbY (CRM) domain Patl_1570 PF01728 FtsJ-like methyltransferase Patl_1571 PF01434 Peptidase family M41 Patl_1571 PF17862 AAA+ lid domain Patl_1571 PF06480 FtsH Extracellular Patl_1571 PF00004 ATPase family associated with various cellular activities (AAA) Patl_1572 PF00809 Pterin binding enzyme Patl_1573 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Patl_1573 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Patl_1573 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Patl_1573 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Patl_1574 PF00121 Triosephosphate isomerase Patl_1575 PF03840 Preprotein translocase SecG subunit Patl_1576 PF08402 TOBE domain Patl_1576 PF00005 ABC transporter Patl_1577 PF00886 Ribosomal protein S16 Patl_1578 PF01782 RimM N-terminal domain Patl_1578 PF05239 PRC-barrel domain Patl_1579 PF01746 tRNA (Guanine-1)-methyltransferase Patl_1580 PF01245 Ribosomal protein L19 Patl_1582 PF00376 MerR family regulatory protein Patl_1582 PF09278 MerR, DNA binding Patl_1583 PF05971 RNA methyltransferase Patl_1584 PF14602 Hexapeptide repeat of succinyl-transferase Patl_1584 PF12464 Maltose acetyltransferase Patl_1586 PF01432 Peptidase family M3 Patl_1587 PF00793 DAHP synthetase I family Patl_1588 PF01817 Chorismate mutase type II Patl_1588 PF02153 Prephenate dehydrogenase Patl_1590 PF00800 Prephenate dehydratase Patl_1590 PF01817 Chorismate mutase type II Patl_1591 PF00072 Response regulator receiver domain Patl_1592 PF01253 Translation initiation factor SUI1 Patl_1594 PF00486 Transcriptional regulatory protein, C terminal Patl_1594 PF00072 Response regulator receiver domain Patl_1596 PF13416 Bacterial extracellular solute-binding protein Patl_1597 PF00528 Binding-protein-dependent transport system inner membrane component Patl_1598 PF00005 ABC transporter Patl_1598 PF08402 TOBE domain Patl_1601 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_1601 PF00512 His Kinase A (phospho-acceptor) domain Patl_1603 PF00158 Sigma-54 interaction domain Patl_1603 PF00072 Response regulator receiver domain Patl_1604 PF01416 tRNA pseudouridine synthase Patl_1605 PF01039 Carboxyl transferase domain Patl_1605 PF17848 Acetyl-coA carboxylase zinc finger domain Patl_1606 PF08245 Mur ligase middle domain Patl_1606 PF02875 Mur ligase family, glutamate ligase domain Patl_1607 PF05036 Sporulation related domain Patl_1608 PF02674 Colicin V production protein Patl_1609 PF00156 Phosphoribosyl transferase domain Patl_1610 PF04893 Yip1 domain Patl_1611 PF13533 Biotin-lipoyl like Patl_1612 PF00005 ABC transporter Patl_1614 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) Patl_1616 PF07681 DoxX Patl_1617 PF00881 Nitroreductase family Patl_1618 PF00270 DEAD/DEAH box helicase Patl_1618 PF00271 Helicase conserved C-terminal domain Patl_1619 PF01144 Coenzyme A transferase Patl_1620 PF01144 Coenzyme A transferase Patl_1621 PF03466 LysR substrate binding domain Patl_1621 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1624 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1624 PF03466 LysR substrate binding domain Patl_1625 PF03315 Serine dehydratase beta chain Patl_1625 PF03313 Serine dehydratase alpha chain Patl_1626 PF00293 NUDIX domain Patl_1627 PF00425 chorismate binding enzyme Patl_1627 PF04715 Anthranilate synthase component I, N terminal region Patl_1629 PF02646 RmuC family Patl_1630 PF00849 RNA pseudouridylate synthase Patl_1632 PF00575 S1 RNA binding domain Patl_1632 PF03725 3' exoribonuclease family, domain 2 Patl_1632 PF01138 3' exoribonuclease family, domain 1 Patl_1632 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Patl_1632 PF00013 KH domain Patl_1633 PF01263 Aldose 1-epimerase Patl_1634 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Patl_1634 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Patl_1635 PF02446 4-alpha-glucanotransferase Patl_1636 PF02806 Alpha amylase, C-terminal all-beta domain Patl_1636 PF00128 Alpha amylase, catalytic domain Patl_1636 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Patl_1637 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Patl_1637 PF00128 Alpha amylase, catalytic domain Patl_1638 PF01641 SelR domain Patl_1640 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Patl_1640 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Patl_1641 PF00246 Zinc carboxypeptidase Patl_1641 PF18027 Cytosolic carboxypeptidase N-terminal domain Patl_1642 PF01235 Sodium:alanine symporter family Patl_1644 PF07023 Protein of unknown function (DUF1315) Patl_1646 PF01479 S4 domain Patl_1646 PF00849 RNA pseudouridylate synthase Patl_1647 PF03600 Citrate transporter Patl_1647 PF02080 TrkA-C domain Patl_1648 PF00009 Elongation factor Tu GTP binding domain Patl_1649 PF00459 Inositol monophosphatase family Patl_1651 PF01507 Phosphoadenosine phosphosulfate reductase family Patl_1652 PF00563 EAL domain Patl_1652 PF08668 HDOD domain Patl_1653 PF00474 Sodium:solute symporter family Patl_1654 PF13673 Acetyltransferase (GNAT) domain Patl_1656 PF04542 Sigma-70 region 2 Patl_1656 PF08281 Sigma-70, region 4 Patl_1658 PF13519 von Willebrand factor type A domain Patl_1659 PF00092 von Willebrand factor type A domain Patl_1661 PF01882 Protein of unknown function DUF58 Patl_1662 PF17863 AAA lid domain Patl_1662 PF07726 ATPase family associated with various cellular activities (AAA) Patl_1663 PF00108 Thiolase, N-terminal domain Patl_1663 PF02803 Thiolase, C-terminal domain Patl_1664 PF00378 Enoyl-CoA hydratase/isomerase Patl_1664 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Patl_1664 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Patl_1665 PF00563 EAL domain Patl_1665 PF00990 Diguanylate cyclase, GGDEF domain Patl_1665 PF03707 Bacterial signalling protein N terminal repeat Patl_1666 PF00675 Insulinase (Peptidase family M16) Patl_1666 PF05193 Peptidase M16 inactive domain Patl_1667 PF00300 Histidine phosphatase superfamily (branch 1) Patl_1668 PF00571 CBS domain Patl_1668 PF03471 Transporter associated domain Patl_1668 PF01595 Cyclin M transmembrane N-terminal domain Patl_1669 PF01578 Cytochrome C assembly protein Patl_1670 PF02978 Signal peptide binding domain Patl_1670 PF02881 SRP54-type protein, helical bundle domain Patl_1670 PF00448 SRP54-type protein, GTPase domain Patl_1673 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1673 PF03466 LysR substrate binding domain Patl_1674 PF00107 Zinc-binding dehydrogenase Patl_1674 PF16884 N-terminal domain of oxidoreductase Patl_1675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1675 PF03466 LysR substrate binding domain Patl_1676 PF02678 Pirin Patl_1676 PF17954 Quercetinase C-terminal cupin domain Patl_1679 PF04389 Peptidase family M28 Patl_1680 PF03707 Bacterial signalling protein N terminal repeat Patl_1680 PF00990 Diguanylate cyclase, GGDEF domain Patl_1680 PF00563 EAL domain Patl_1682 PF17158 Membrane-associated sensor, integral membrane domain Patl_1682 PF00990 Diguanylate cyclase, GGDEF domain Patl_1685 PF00596 Class II Aldolase and Adducin N-terminal domain Patl_1686 PF13378 Enolase C-terminal domain-like Patl_1686 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Patl_1688 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_1688 PF09317 Domain of unknown function (DUF1974) Patl_1688 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_1689 PF08460 Bacterial SH3 domain Patl_1689 PF01551 Peptidase family M23 Patl_1691 PF00593 TonB dependent receptor Patl_1691 PF07715 TonB-dependent Receptor Plug Domain Patl_1692 PF01329 Pterin 4 alpha carbinolamine dehydratase Patl_1693 PF02576 RimP N-terminal domain Patl_1693 PF17384 RimP C-terminal SH3 domain Patl_1694 PF08529 NusA N-terminal domain Patl_1694 PF00575 S1 RNA binding domain Patl_1694 PF13184 NusA-like KH domain Patl_1695 PF03144 Elongation factor Tu domain 2 Patl_1695 PF11987 Translation-initiation factor 2 Patl_1695 PF08364 Bacterial translation initiation factor IF-2 associated region Patl_1695 PF00009 Elongation factor Tu GTP binding domain Patl_1695 PF04760 Translation initiation factor IF-2, N-terminal region Patl_1696 PF02033 Ribosome-binding factor A Patl_1697 PF09157 Pseudouridine synthase II TruB, C-terminal Patl_1697 PF01509 TruB family pseudouridylate synthase (N terminal domain) Patl_1697 PF16198 tRNA pseudouridylate synthase B C-terminal domain Patl_1698 PF00312 Ribosomal protein S15 Patl_1700 PF12843 Putative quorum-sensing-regulated virulence factor Patl_1701 PF00005 ABC transporter Patl_1701 PF00664 ABC transporter transmembrane region Patl_1702 PF08448 PAS fold Patl_1702 PF00990 Diguanylate cyclase, GGDEF domain Patl_1704 PF02470 MlaD protein Patl_1705 PF04403 Paraquat-inducible protein A Patl_1706 PF01451 Low molecular weight phosphotyrosine protein phosphatase Patl_1707 PF01474 Class-II DAHP synthetase family Patl_1709 PF02421 Ferrous iron transport protein B Patl_1709 PF07670 Nucleoside recognition Patl_1709 PF07664 Ferrous iron transport protein B C terminus Patl_1712 PF12848 ABC transporter Patl_1712 PF00005 ABC transporter Patl_1713 PF04355 SmpA / OmlA family Patl_1714 PF02463 RecF/RecN/SMC N terminal domain Patl_1715 PF01513 ATP-NAD kinase Patl_1716 PF00933 Glycosyl hydrolase family 3 N terminal domain Patl_1717 PF00939 Sodium:sulfate symporter transmembrane region Patl_1719 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1719 PF03466 LysR substrate binding domain Patl_1725 PF02559 CarD-like/TRCF domain Patl_1725 PF00270 DEAD/DEAH box helicase Patl_1725 PF00271 Helicase conserved C-terminal domain Patl_1725 PF17757 UvrB interaction domain Patl_1725 PF03461 TRCF domain Patl_1727 PF02687 FtsX-like permease family Patl_1727 PF12704 MacB-like periplasmic core domain Patl_1730 PF04237 YjbR Patl_1731 PF05532 CsbD-like Patl_1739 PF01668 SmpB protein Patl_1740 PF03364 Polyketide cyclase / dehydrase and lipid transport Patl_1741 PF03658 RnfH family Ubiquitin Patl_1743 PF03618 Kinase/pyrophosphorylase Patl_1744 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Patl_1744 PF02896 PEP-utilising enzyme, TIM barrel domain Patl_1744 PF00391 PEP-utilising enzyme, mobile domain Patl_1746 PF02913 FAD linked oxidases, C-terminal domain Patl_1746 PF01565 FAD binding domain Patl_1746 PF13183 4Fe-4S dicluster domain Patl_1747 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Patl_1747 PF00753 Metallo-beta-lactamase superfamily Patl_1747 PF10996 Beta-Casp domain Patl_1748 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Patl_1748 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Patl_1749 PF00850 Histone deacetylase domain Patl_1750 PF00672 HAMP domain Patl_1750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_1750 PF13426 PAS domain Patl_1750 PF00512 His Kinase A (phospho-acceptor) domain Patl_1753 PF08240 Alcohol dehydrogenase GroES-like domain Patl_1753 PF00107 Zinc-binding dehydrogenase Patl_1756 PF17946 RecC C-terminal domain Patl_1757 PF12705 PD-(D/E)XK nuclease superfamily Patl_1757 PF13361 UvrD-like helicase C-terminal domain Patl_1757 PF00580 UvrD/REP helicase N-terminal domain Patl_1758 PF13538 UvrD-like helicase C-terminal domain Patl_1762 PF00266 Aminotransferase class-V Patl_1769 PF00990 Diguanylate cyclase, GGDEF domain Patl_1771 PF00072 Response regulator receiver domain Patl_1771 PF00990 Diguanylate cyclase, GGDEF domain Patl_1772 PF08546 Ketopantoate reductase PanE/ApbA C terminal Patl_1772 PF02558 Ketopantoate reductase PanE/ApbA Patl_1774 PF06470 SMC proteins Flexible Hinge Domain Patl_1774 PF02463 RecF/RecN/SMC N terminal domain Patl_1775 PF04354 ZipA, C-terminal FtsZ-binding domain Patl_1776 PF03120 NAD-dependent DNA ligase OB-fold domain Patl_1776 PF01653 NAD-dependent DNA ligase adenylation domain Patl_1776 PF00533 BRCA1 C Terminus (BRCT) domain Patl_1776 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Patl_1776 PF12826 Helix-hairpin-helix motif Patl_1779 PF03772 Competence protein Patl_1779 PF00753 Metallo-beta-lactamase superfamily Patl_1780 PF00005 ABC transporter Patl_1780 PF00664 ABC transporter transmembrane region Patl_1781 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Patl_1782 PF03966 Trm112p-like protein Patl_1783 PF02348 Cytidylyltransferase Patl_1784 PF00291 Pyridoxal-phosphate dependent enzyme Patl_1785 PF17158 Membrane-associated sensor, integral membrane domain Patl_1785 PF00990 Diguanylate cyclase, GGDEF domain Patl_1789 PF03466 LysR substrate binding domain Patl_1789 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1791 PF00899 ThiF family Patl_1792 PF01050 Mannose-6-phosphate isomerase Patl_1792 PF00483 Nucleotidyl transferase Patl_1793 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Patl_1793 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Patl_1793 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Patl_1793 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Patl_1794 PF00285 Citrate synthase, C-terminal domain Patl_1795 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Patl_1796 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Patl_1797 PF02910 Fumarate reductase flavoprotein C-term Patl_1797 PF00890 FAD binding domain Patl_1798 PF13085 2Fe-2S iron-sulfur cluster binding domain Patl_1799 PF16078 2-oxoglutarate dehydrogenase N-terminus Patl_1799 PF16870 2-oxoglutarate dehydrogenase C-terminal Patl_1799 PF00676 Dehydrogenase E1 component Patl_1799 PF02779 Transketolase, pyrimidine binding domain Patl_1800 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Patl_1800 PF02817 e3 binding domain Patl_1800 PF00364 Biotin-requiring enzyme Patl_1801 PF00549 CoA-ligase Patl_1801 PF08442 ATP-grasp domain Patl_1802 PF02629 CoA binding domain Patl_1802 PF00549 CoA-ligase Patl_1803 PF00326 Prolyl oligopeptidase family Patl_1804 PF08031 Berberine and berberine like Patl_1804 PF01565 FAD binding domain Patl_1806 PF07995 Glucose / Sorbosone dehydrogenase Patl_1808 PF00296 Luciferase-like monooxygenase Patl_1809 PF03575 Peptidase family S51 Patl_1810 PF00593 TonB dependent receptor Patl_1810 PF07715 TonB-dependent Receptor Plug Domain Patl_1812 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_1812 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_1812 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_1813 PF01636 Phosphotransferase enzyme family Patl_1814 PF08240 Alcohol dehydrogenase GroES-like domain Patl_1814 PF00107 Zinc-binding dehydrogenase Patl_1823 PF00356 Bacterial regulatory proteins, lacI family Patl_1823 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Patl_1825 PF01204 Trehalase Patl_1828 PF00756 Putative esterase Patl_1829 PF08240 Alcohol dehydrogenase GroES-like domain Patl_1829 PF00107 Zinc-binding dehydrogenase Patl_1834 PF00919 Uncharacterized protein family UPF0004 Patl_1834 PF18693 TRAM domain Patl_1834 PF04055 Radical SAM superfamily Patl_1836 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_1836 PF00989 PAS fold Patl_1836 PF16736 Single Cache-like Patl_1836 PF00512 His Kinase A (phospho-acceptor) domain Patl_1837 PF02652 L-lactate permease Patl_1839 PF17755 UvrA DNA-binding domain Patl_1841 PF00884 Sulfatase Patl_1842 PF00884 Sulfatase Patl_1842 PF16385 Domain of unknown function Patl_1843 PF13495 Phage integrase, N-terminal SAM-like domain Patl_1843 PF00589 Phage integrase family Patl_1855 PF13360 PQQ-like domain Patl_1855 PF01011 PQQ enzyme repeat Patl_1860 PF00005 ABC transporter Patl_1863 PF00593 TonB dependent receptor Patl_1863 PF07715 TonB-dependent Receptor Plug Domain Patl_1866 PF00005 ABC transporter Patl_1870 PF00196 Bacterial regulatory proteins, luxR family Patl_1870 PF00072 Response regulator receiver domain Patl_1871 PF09456 RcsC Alpha-Beta-Loop (ABL) Patl_1871 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_1871 PF00512 His Kinase A (phospho-acceptor) domain Patl_1871 PF00072 Response regulator receiver domain Patl_1873 PF04205 FMN-binding domain Patl_1873 PF12801 4Fe-4S binding domain Patl_1874 PF00171 Aldehyde dehydrogenase family Patl_1875 PF13460 NAD(P)H-binding Patl_1876 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Patl_1878 PF03466 LysR substrate binding domain Patl_1878 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_1879 PF01336 OB-fold nucleic acid binding domain Patl_1879 PF00152 tRNA synthetases class II (D, K and N) Patl_1882 PF00291 Pyridoxal-phosphate dependent enzyme Patl_1883 PF13404 AsnC-type helix-turn-helix domain Patl_1883 PF01037 Lrp/AsnC ligand binding domain Patl_1884 PF03553 Na+/H+ antiporter family Patl_1886 PF00149 Calcineurin-like phosphoesterase Patl_1887 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Patl_1888 PF09190 DALR domain Patl_1888 PF01406 tRNA synthetases class I (C) catalytic domain Patl_1894 PF01464 Transglycosylase SLT domain Patl_1894 PF01476 LysM domain Patl_1895 PF00753 Metallo-beta-lactamase superfamily Patl_1895 PF16123 Hydroxyacylglutathione hydrolase C-terminus Patl_1896 PF08241 Methyltransferase domain Patl_1897 PF01588 Putative tRNA binding domain Patl_1897 PF09334 tRNA synthetases class I (M) Patl_1897 PF08264 Anticodon-binding domain of tRNA Patl_1898 PF10609 NUBPL iron-transfer P-loop NTPase Patl_1899 PF00692 dUTPase Patl_1904 PF18206 Porphyranase catalytic subdomain 1 Patl_1906 PF00144 Beta-lactamase Patl_1909 PF02311 AraC-like ligand binding domain Patl_1909 PF12833 Helix-turn-helix domain Patl_1910 PF07690 Major Facilitator Superfamily Patl_1911 PF00171 Aldehyde dehydrogenase family Patl_1912 PF01433 Peptidase family M1 domain Patl_1912 PF11838 ERAP1-like C-terminal domain Patl_1913 PF13193 AMP-binding enzyme C-terminal domain Patl_1913 PF00501 AMP-binding enzyme Patl_1915 PF00561 alpha/beta hydrolase fold Patl_1916 PF00378 Enoyl-CoA hydratase/isomerase Patl_1916 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Patl_1916 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Patl_1917 PF02803 Thiolase, C-terminal domain Patl_1917 PF00108 Thiolase, N-terminal domain Patl_1918 PF12806 Acetyl-CoA dehydrogenase C-terminal like Patl_1918 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_1918 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_1918 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_1919 PF00561 alpha/beta hydrolase fold Patl_1920 PF05230 MASE2 domain Patl_1920 PF00990 Diguanylate cyclase, GGDEF domain Patl_1927 PF07690 Major Facilitator Superfamily Patl_1928 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Patl_1931 PF13667 ThiC-associated domain Patl_1931 PF01964 Radical SAM ThiC family Patl_1932 PF01266 FAD dependent oxidoreductase Patl_1934 PF05690 Thiazole biosynthesis protein ThiG Patl_1935 PF02581 Thiamine monophosphate synthase Patl_1936 PF00899 ThiF family Patl_1939 PF04820 Tryptophan halogenase Patl_1941 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Patl_1941 PF11852 Domain of unknown function (DUF3372) Patl_1941 PF03714 Bacterial pullanase-associated domain Patl_1941 PF18494 Pullulanase Ins domain Patl_1941 PF17967 Pullulanase N2 domain Patl_1954 PF04320 Protein with unknown function (DUF469) Patl_1969 PF00294 pfkB family carbohydrate kinase Patl_1970 PF00083 Sugar (and other) transporter Patl_1971 PF17992 Agarase CBM like domain Patl_1971 PF02449 Beta-galactosidase Patl_1975 PF00141 Peroxidase Patl_1978 PF00561 alpha/beta hydrolase fold Patl_1980 PF00593 TonB dependent receptor Patl_1980 PF07715 TonB-dependent Receptor Plug Domain Patl_1981 PF00072 Response regulator receiver domain Patl_1981 PF00196 Bacterial regulatory proteins, luxR family Patl_1985 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Patl_1985 PF00512 His Kinase A (phospho-acceptor) domain Patl_1985 PF00072 Response regulator receiver domain Patl_1985 PF01627 Hpt domain Patl_1985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_1985 PF00672 HAMP domain Patl_1986 PF01025 GrpE Patl_1987 PF00012 Hsp70 protein Patl_1988 PF00226 DnaJ domain Patl_1988 PF01556 DnaJ C terminal domain Patl_1988 PF00684 DnaJ central domain Patl_1989 PF01322 Cytochrome C' Patl_1990 PF13185 GAF domain Patl_1992 PF17516 ProQ C-terminal domain Patl_1992 PF04352 ProQ/FINO family Patl_1993 PF17804 Tail specific protease N-terminal domain Patl_1993 PF03572 Peptidase family S41 Patl_1993 PF00595 PDZ domain Patl_1993 PF11818 C-terminal domain of tail specific protease (DUF3340) Patl_1994 PF00209 Sodium:neurotransmitter symporter family Patl_1996 PF01433 Peptidase family M1 domain Patl_1996 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Patl_1996 PF11940 Domain of unknown function (DUF3458) Ig-like fold Patl_1999 PF07044 Protein of unknown function (DUF1329) Patl_2002 PF05088 Bacterial NAD-glutamate dehydrogenase Patl_2003 PF01180 Dihydroorotate dehydrogenase Patl_2004 PF07126 Cell-division protein ZapC Patl_2005 PF02926 THUMP domain Patl_2005 PF10672 S-adenosylmethionine-dependent methyltransferase Patl_2005 PF01170 Putative RNA methylase family UPF0020 Patl_2008 PF04957 Ribosome modulation factor Patl_2009 PF07977 FabA-like domain Patl_2011 PF02810 SEC-C motif Patl_2013 PF01794 Ferric reductase like transmembrane component Patl_2014 PF00174 Oxidoreductase molybdopterin binding domain Patl_2015 PF01966 HD domain Patl_2015 PF13286 Phosphohydrolase-associated domain Patl_2019 PF13291 ACT domain Patl_2019 PF04607 Region found in RelA / SpoT proteins Patl_2019 PF02824 TGS domain Patl_2024 PF13411 MerR HTH family regulatory protein Patl_2025 PF01545 Cation efflux family Patl_2027 PF01545 Cation efflux family Patl_2027 PF16916 Dimerisation domain of Zinc Transporter Patl_2031 PF00873 AcrB/AcrD/AcrF family Patl_2034 PF00155 Aminotransferase class I and II Patl_2036 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal Patl_2036 PF00676 Dehydrogenase E1 component Patl_2037 PF02779 Transketolase, pyrimidine binding domain Patl_2037 PF02780 Transketolase, C-terminal domain Patl_2038 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Patl_2038 PF02817 e3 binding domain Patl_2038 PF00364 Biotin-requiring enzyme Patl_2039 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Patl_2040 PF00069 Protein kinase domain Patl_2042 PF00132 Bacterial transferase hexapeptide (six repeats) Patl_2043 PF00266 Aminotransferase class-V Patl_2046 PF00005 ABC transporter Patl_2048 PF04960 Glutaminase Patl_2051 PF07687 Peptidase dimerisation domain Patl_2051 PF01546 Peptidase family M20/M25/M40 Patl_2052 PF00266 Aminotransferase class-V Patl_2053 PF01925 Sulfite exporter TauE/SafE Patl_2055 PF01425 Amidase Patl_2056 PF10415 Fumarase C C-terminus Patl_2056 PF00206 Lyase Patl_2058 PF02146 Sir2 family Patl_2059 PF01810 LysE type translocator Patl_2063 PF01734 Patatin-like phospholipase Patl_2064 PF01171 PP-loop family Patl_2065 PF00582 Universal stress protein family Patl_2068 PF00403 Heavy-metal-associated domain Patl_2070 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Patl_2070 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Patl_2073 PF00115 Cytochrome C and Quinol oxidase polypeptide I Patl_2075 PF00210 Ferritin-like domain Patl_2076 PF00210 Ferritin-like domain Patl_2078 PF05552 Conserved TM helix Patl_2079 PF04542 Sigma-70 region 2 Patl_2079 PF08281 Sigma-70, region 4 Patl_2080 PF00691 OmpA family Patl_2080 PF05736 OprF membrane domain Patl_2081 PF02253 Phospholipase A1 Patl_2082 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Patl_2082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_2082 PF00072 Response regulator receiver domain Patl_2082 PF00512 His Kinase A (phospho-acceptor) domain Patl_2082 PF00672 HAMP domain Patl_2082 PF01627 Hpt domain Patl_2084 PF00483 Nucleotidyl transferase Patl_2085 PF00027 Cyclic nucleotide-binding domain Patl_2085 PF13545 Crp-like helix-turn-helix domain Patl_2087 PF00365 Phosphofructokinase Patl_2088 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Patl_2088 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Patl_2089 PF01590 GAF domain Patl_2089 PF00563 EAL domain Patl_2089 PF00990 Diguanylate cyclase, GGDEF domain Patl_2089 PF00360 Phytochrome region Patl_2091 PF00403 Heavy-metal-associated domain Patl_2094 PF00582 Universal stress protein family Patl_2096 PF00196 Bacterial regulatory proteins, luxR family Patl_2096 PF00072 Response regulator receiver domain Patl_2097 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_2097 PF00512 His Kinase A (phospho-acceptor) domain Patl_2097 PF00989 PAS fold Patl_2098 PF01545 Cation efflux family Patl_2098 PF16916 Dimerisation domain of Zinc Transporter Patl_2100 PF01556 DnaJ C terminal domain Patl_2100 PF00226 DnaJ domain Patl_2102 PF00027 Cyclic nucleotide-binding domain Patl_2102 PF13302 Acetyltransferase (GNAT) domain Patl_2103 PF00582 Universal stress protein family Patl_2104 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Patl_2104 PF00072 Response regulator receiver domain Patl_2104 PF01627 Hpt domain Patl_2104 PF00512 His Kinase A (phospho-acceptor) domain Patl_2104 PF00672 HAMP domain Patl_2104 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_2105 PF01022 Bacterial regulatory protein, arsR family Patl_2107 PF04143 Sulphur transport Patl_2109 PF08534 Redoxin Patl_2110 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Patl_2110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Patl_2112 PF13360 PQQ-like domain Patl_2113 PF00128 Alpha amylase, catalytic domain Patl_2113 PF11941 Domain of unknown function (DUF3459) Patl_2115 PF01026 TatD related DNase Patl_2116 PF09115 DNA polymerase III, delta subunit, C terminal Patl_2117 PF02223 Thymidylate kinase Patl_2118 PF02618 YceG-like family Patl_2119 PF01063 Amino-transferase class IV Patl_2120 PF00109 Beta-ketoacyl synthase, N-terminal domain Patl_2120 PF02801 Beta-ketoacyl synthase, C-terminal domain Patl_2121 PF00550 Phosphopantetheine attachment site Patl_2123 PF00698 Acyl transferase domain Patl_2124 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Patl_2124 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Patl_2125 PF02504 Fatty acid synthesis protein Patl_2126 PF01783 Ribosomal L32p protein family Patl_2127 PF02620 Large ribosomal RNA subunit accumulation protein YceD Patl_2128 PF02545 Maf-like protein Patl_2129 PF04321 RmlD substrate binding domain Patl_2130 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Patl_2131 PF00483 Nucleotidyl transferase Patl_2132 PF16363 GDP-mannose 4,6 dehydratase Patl_2133 PF01479 S4 domain Patl_2133 PF00849 RNA pseudouridylate synthase Patl_2134 PF00575 S1 RNA binding domain Patl_2134 PF10150 Ribonuclease E/G family Patl_2134 PF12111 Polyribonucleotide phosphorylase C terminal Patl_2135 PF00270 DEAD/DEAH box helicase Patl_2135 PF00271 Helicase conserved C-terminal domain Patl_2136 PF11739 Dicarboxylate transport Patl_2137 PF13617 YnbE-like lipoprotein Patl_2138 PF07027 Protein of unknown function (DUF1318) Patl_2141 PF12806 Acetyl-CoA dehydrogenase C-terminal like Patl_2141 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_2141 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_2141 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_2142 PF12833 Helix-turn-helix domain Patl_2142 PF02311 AraC-like ligand binding domain Patl_2143 PF02806 Alpha amylase, C-terminal all-beta domain Patl_2143 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Patl_2143 PF00128 Alpha amylase, catalytic domain Patl_2144 PF08532 Beta-galactosidase trimerisation domain Patl_2144 PF08533 Beta-galactosidase C-terminal domain Patl_2144 PF02449 Beta-galactosidase Patl_2145 PF00766 Electron transfer flavoprotein FAD-binding domain Patl_2145 PF01012 Electron transfer flavoprotein domain Patl_2146 PF01012 Electron transfer flavoprotein domain Patl_2149 PF00561 alpha/beta hydrolase fold Patl_2151 PF00258 Flavodoxin Patl_2152 PF01475 Ferric uptake regulator family Patl_2153 PF00528 Binding-protein-dependent transport system inner membrane component Patl_2155 PF02391 MoaE protein Patl_2156 PF02597 ThiS family Patl_2157 PF01967 MoaC family Patl_2158 PF00994 Probable molybdopterin binding domain Patl_2159 PF12804 MobA-like NTP transferase domain Patl_2160 PF04055 Radical SAM superfamily Patl_2160 PF06463 Molybdenum Cofactor Synthesis C Patl_2164 PF00128 Alpha amylase, catalytic domain Patl_2167 PF00550 Phosphopantetheine attachment site Patl_2167 PF08659 KR domain Patl_2167 PF14765 Polyketide synthase dehydratase Patl_2167 PF00698 Acyl transferase domain Patl_2167 PF08240 Alcohol dehydrogenase GroES-like domain Patl_2167 PF16197 Ketoacyl-synthetase C-terminal extension Patl_2167 PF02801 Beta-ketoacyl synthase, C-terminal domain Patl_2167 PF00109 Beta-ketoacyl synthase, N-terminal domain Patl_2168 PF10672 S-adenosylmethionine-dependent methyltransferase Patl_2168 PF17785 PUA-like domain Patl_2170 PF04408 Helicase associated domain (HA2) Patl_2170 PF00270 DEAD/DEAH box helicase Patl_2170 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Patl_2170 PF00271 Helicase conserved C-terminal domain Patl_2170 PF11898 Domain of unknown function (DUF3418) Patl_2172 PF08411 Exonuclease C-terminal Patl_2172 PF00929 Exonuclease Patl_2175 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Patl_2175 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Patl_2176 PF00255 Glutathione peroxidase Patl_2178 PF01784 NIF3 (NGG1p interacting factor 3) Patl_2179 PF00875 DNA photolyase Patl_2179 PF03441 FAD binding domain of DNA photolyase Patl_2181 PF08496 Peptidase family S49 N-terminal Patl_2181 PF01343 Peptidase family S49 Patl_2182 PF12262 Bacterial virulence factor lipase N-terminal Patl_2183 PF00106 short chain dehydrogenase Patl_2184 PF00749 tRNA synthetases class I (E and Q), catalytic domain Patl_2184 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Patl_2185 PF00356 Bacterial regulatory proteins, lacI family Patl_2186 PF00686 Starch binding domain Patl_2186 PF00128 Alpha amylase, catalytic domain Patl_2188 PF00990 Diguanylate cyclase, GGDEF domain Patl_2188 PF00563 EAL domain Patl_2188 PF03707 Bacterial signalling protein N terminal repeat Patl_2191 PF03960 ArsC family Patl_2192 PF01546 Peptidase family M20/M25/M40 Patl_2192 PF07687 Peptidase dimerisation domain Patl_2193 PF02557 D-alanyl-D-alanine carboxypeptidase Patl_2194 PF01906 Putative heavy-metal-binding Patl_2195 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Patl_2196 PF13185 GAF domain Patl_2196 PF00563 EAL domain Patl_2196 PF00990 Diguanylate cyclase, GGDEF domain Patl_2197 PF00343 Carbohydrate phosphorylase Patl_2198 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Patl_2198 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Patl_2198 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Patl_2198 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Patl_2199 PF03925 SeqA protein C-terminal domain Patl_2199 PF17206 SeqA protein N-terminal domain Patl_2200 PF18125 RlmM ferredoxin-like domain Patl_2200 PF01728 FtsJ-like methyltransferase Patl_2201 PF04241 Protein of unknown function (DUF423) Patl_2203 PF03466 LysR substrate binding domain Patl_2203 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_2206 PF00919 Uncharacterized protein family UPF0004 Patl_2206 PF04055 Radical SAM superfamily Patl_2206 PF01938 TRAM domain Patl_2207 PF02562 PhoH-like protein Patl_2208 PF02130 Uncharacterized protein family UPF0054 Patl_2209 PF00571 CBS domain Patl_2209 PF03471 Transporter associated domain Patl_2210 PF00795 Carbon-nitrogen hydrolase Patl_2211 PF00892 EamA-like transporter family Patl_2212 PF01965 DJ-1/PfpI family Patl_2213 PF01272 Transcription elongation factor, GreA/GreB, C-term Patl_2213 PF03449 Transcription elongation factor, N-terminal Patl_2214 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Patl_2214 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Patl_2214 PF02142 MGS-like domain Patl_2215 PF00117 Glutamine amidotransferase class-I Patl_2215 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Patl_2216 PF05173 Dihydrodipicolinate reductase, C-terminus Patl_2216 PF01113 Dihydrodipicolinate reductase, N-terminus Patl_2217 PF01037 Lrp/AsnC ligand binding domain Patl_2218 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Patl_2218 PF14850 DNA-binding domain of Proline dehydrogenase Patl_2218 PF01619 Proline dehydrogenase Patl_2218 PF00171 Aldehyde dehydrogenase family Patl_2222 PF00962 Adenosine/AMP deaminase Patl_2223 PF00860 Permease family Patl_2224 PF01979 Amidohydrolase family Patl_2229 PF13533 Biotin-lipoyl like Patl_2230 PF00873 AcrB/AcrD/AcrF family Patl_2231 PF00873 AcrB/AcrD/AcrF family Patl_2232 PF00248 Aldo/keto reductase family Patl_2234 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Patl_2235 PF00873 AcrB/AcrD/AcrF family Patl_2236 PF01568 Molydopterin dinucleotide binding domain Patl_2236 PF00384 Molybdopterin oxidoreductase Patl_2236 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Patl_2237 PF06906 Protein of unknown function (DUF1272) Patl_2239 PF12704 MacB-like periplasmic core domain Patl_2239 PF02687 FtsX-like permease family Patl_2239 PF00005 ABC transporter Patl_2241 PF00005 ABC transporter Patl_2241 PF02687 FtsX-like permease family Patl_2241 PF12704 MacB-like periplasmic core domain Patl_2246 PF00563 EAL domain Patl_2246 PF00498 FHA domain Patl_2246 PF00990 Diguanylate cyclase, GGDEF domain Patl_2247 PF08447 PAS fold Patl_2247 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Patl_2248 PF00072 Response regulator receiver domain Patl_2249 PF00512 His Kinase A (phospho-acceptor) domain Patl_2249 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_2249 PF01627 Hpt domain Patl_2249 PF00072 Response regulator receiver domain Patl_2251 PF00072 Response regulator receiver domain Patl_2251 PF00486 Transcriptional regulatory protein, C terminal Patl_2252 PF00512 His Kinase A (phospho-acceptor) domain Patl_2252 PF00672 HAMP domain Patl_2252 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_2253 PF03707 Bacterial signalling protein N terminal repeat Patl_2253 PF00990 Diguanylate cyclase, GGDEF domain Patl_2253 PF00563 EAL domain Patl_2255 PF00248 Aldo/keto reductase family Patl_2256 PF06719 AraC-type transcriptional regulator N-terminus Patl_2256 PF12833 Helix-turn-helix domain Patl_2257 PF12794 Mechanosensitive ion channel inner membrane domain 1 Patl_2257 PF12795 Mechanosensitive ion channel porin domain Patl_2257 PF00924 Mechanosensitive ion channel Patl_2258 PF00593 TonB dependent receptor Patl_2258 PF07715 TonB-dependent Receptor Plug Domain Patl_2263 PF02254 TrkA-N domain Patl_2263 PF00999 Sodium/hydrogen exchanger family Patl_2267 PF02447 GntP family permease Patl_2269 PF00580 UvrD/REP helicase N-terminal domain Patl_2269 PF12462 DNA helicase IV / RNA helicase N terminal Patl_2269 PF13361 UvrD-like helicase C-terminal domain Patl_2272 PF03458 UPF0126 domain Patl_2273 PF13640 2OG-Fe(II) oxygenase superfamily Patl_2273 PF18331 PKHD-type hydroxylase C-terminal domain Patl_2274 PF01070 FMN-dependent dehydrogenase Patl_2275 PF07715 TonB-dependent Receptor Plug Domain Patl_2275 PF00593 TonB dependent receptor Patl_2276 PF03544 Gram-negative bacterial TonB protein C-terminal Patl_2279 PF01618 MotA/TolQ/ExbB proton channel family Patl_2282 PF01293 Phosphoenolpyruvate carboxykinase Patl_2283 PF07237 Protein of unknown function (DUF1428) Patl_2284 PF00999 Sodium/hydrogen exchanger family Patl_2284 PF02254 TrkA-N domain Patl_2285 PF00582 Universal stress protein family Patl_2286 PF00690 Cation transporter/ATPase, N-terminus Patl_2286 PF00689 Cation transporting ATPase, C-terminus Patl_2287 PF00970 Oxidoreductase FAD-binding domain Patl_2287 PF00175 Oxidoreductase NAD-binding domain Patl_2289 PF01810 LysE type translocator Patl_2290 PF00072 Response regulator receiver domain Patl_2290 PF00196 Bacterial regulatory proteins, luxR family Patl_2291 PF17200 Single Cache domain 2 Patl_2291 PF07730 Histidine kinase Patl_2292 PF03480 Bacterial extracellular solute-binding protein, family 7 Patl_2294 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Patl_2297 PF00080 Copper/zinc superoxide dismutase (SODC) Patl_2301 PF00072 Response regulator receiver domain Patl_2301 PF00486 Transcriptional regulatory protein, C terminal Patl_2302 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Patl_2302 PF00072 Response regulator receiver domain Patl_2302 PF01627 Hpt domain Patl_2302 PF00512 His Kinase A (phospho-acceptor) domain Patl_2302 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_2302 PF00672 HAMP domain Patl_2303 PF07992 Pyridine nucleotide-disulphide oxidoreductase Patl_2303 PF14759 Reductase C-terminal Patl_2304 PF00111 2Fe-2S iron-sulfur cluster binding domain Patl_2305 PF00067 Cytochrome P450 Patl_2307 PF00107 Zinc-binding dehydrogenase Patl_2307 PF08240 Alcohol dehydrogenase GroES-like domain Patl_2308 PF00756 Putative esterase Patl_2309 PF10502 Signal peptidase, peptidase S26 Patl_2310 PF00990 Diguanylate cyclase, GGDEF domain Patl_2310 PF07694 5TMR of 5TMR-LYT Patl_2312 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_2312 PF03466 LysR substrate binding domain Patl_2313 PF00486 Transcriptional regulatory protein, C terminal Patl_2313 PF00072 Response regulator receiver domain Patl_2321 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Patl_2321 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Patl_2322 PF05853 beta-keto acid cleavage enzyme Patl_2326 PF01614 Bacterial transcriptional regulator Patl_2326 PF09339 IclR helix-turn-helix domain Patl_2328 PF00849 RNA pseudouridylate synthase Patl_2329 PF07690 Major Facilitator Superfamily Patl_2330 PF00271 Helicase conserved C-terminal domain Patl_2330 PF00270 DEAD/DEAH box helicase Patl_2331 PF03466 LysR substrate binding domain Patl_2331 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_2332 PF00596 Class II Aldolase and Adducin N-terminal domain Patl_2335 PF01966 HD domain Patl_2338 PF16338 Domain of unknown function (DUF4968) Patl_2338 PF01055 Glycosyl hydrolases family 31 Patl_2338 PF17137 Domain of unknown function (DUF5110) Patl_2338 PF13802 Galactose mutarotase-like Patl_2339 PF00756 Putative esterase Patl_2340 PF01833 IPT/TIG domain Patl_2340 PF00686 Starch binding domain Patl_2340 PF02806 Alpha amylase, C-terminal all-beta domain Patl_2340 PF00128 Alpha amylase, catalytic domain Patl_2341 PF18206 Porphyranase catalytic subdomain 1 Patl_2344 PF13438 Domain of unknown function (DUF4113) Patl_2344 PF00817 impB/mucB/samB family Patl_2344 PF11799 impB/mucB/samB family C-terminal domain Patl_2345 PF00717 Peptidase S24-like Patl_2348 PF02811 PHP domain Patl_2348 PF11490 DNA polymerase III polC-type N-terminus II Patl_2348 PF00929 Exonuclease Patl_2348 PF14579 Helix-hairpin-helix motif Patl_2348 PF07733 Bacterial DNA polymerase III alpha NTPase domain Patl_2348 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Patl_2348 PF01336 OB-fold nucleic acid binding domain Patl_2355 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) Patl_2356 PF08272 Topoisomerase I zinc-ribbon-like Patl_2356 PF01131 DNA topoisomerase Patl_2356 PF01751 Toprim domain Patl_2356 PF01396 Topoisomerase DNA binding C4 zinc finger Patl_2357 PF04996 Succinylarginine dihydrolase Patl_2359 PF00375 Sodium:dicarboxylate symporter family Patl_2360 PF02687 FtsX-like permease family Patl_2360 PF12704 MacB-like periplasmic core domain Patl_2361 PF00005 ABC transporter Patl_2362 PF00571 CBS domain Patl_2362 PF01595 Cyclin M transmembrane N-terminal domain Patl_2364 PF00929 Exonuclease Patl_2365 PF00075 RNase H Patl_2367 PF01343 Peptidase family S49 Patl_2368 PF10263 SprT-like family Patl_2369 PF04217 Protein of unknown function, DUF412 Patl_2370 PF07992 Pyridine nucleotide-disulphide oxidoreductase Patl_2371 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Patl_2372 PF04377 Arginine-tRNA-protein transferase, C terminus Patl_2372 PF04376 Arginine-tRNA-protein transferase, N terminus Patl_2373 PF01176 Translation initiation factor 1A / IF-1 Patl_2374 PF07724 AAA domain (Cdc48 subfamily) Patl_2374 PF17871 AAA lid domain Patl_2374 PF02861 Clp amino terminal domain, pathogenicity island component Patl_2374 PF10431 C-terminal, D2-small domain, of ClpB protein Patl_2374 PF00004 ATPase family associated with various cellular activities (AAA) Patl_2375 PF02617 ATP-dependent Clp protease adaptor protein ClpS Patl_2376 PF00313 'Cold-shock' DNA-binding domain Patl_2377 PF03971 Monomeric isocitrate dehydrogenase Patl_2378 PF00849 RNA pseudouridylate synthase Patl_2381 PF00206 Lyase Patl_2381 PF08328 Adenylosuccinate lyase C-terminal Patl_2382 PF00211 Adenylate and Guanylate cyclase catalytic domain Patl_2383 PF08007 Cupin superfamily protein Patl_2385 PF04397 LytTr DNA-binding domain Patl_2385 PF00072 Response regulator receiver domain Patl_2386 PF06580 Histidine kinase Patl_2386 PF07694 5TMR of 5TMR-LYT Patl_2386 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_2389 PF13180 PDZ domain Patl_2390 PF00962 Adenosine/AMP deaminase Patl_2391 PF00107 Zinc-binding dehydrogenase Patl_2391 PF08240 Alcohol dehydrogenase GroES-like domain Patl_2392 PF00873 AcrB/AcrD/AcrF family Patl_2393 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Patl_2396 PF00999 Sodium/hydrogen exchanger family Patl_2397 PF01258 Prokaryotic dksA/traR C4-type zinc finger Patl_2399 PF00795 Carbon-nitrogen hydrolase Patl_2400 PF07992 Pyridine nucleotide-disulphide oxidoreductase Patl_2400 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Patl_2402 PF07715 TonB-dependent Receptor Plug Domain Patl_2402 PF00593 TonB dependent receptor Patl_2406 PF00005 ABC transporter Patl_2407 PF12704 MacB-like periplasmic core domain Patl_2407 PF02687 FtsX-like permease family Patl_2407 PF00005 ABC transporter Patl_2408 PF12704 MacB-like periplasmic core domain Patl_2408 PF02687 FtsX-like permease family Patl_2408 PF00005 ABC transporter Patl_2409 PF01169 Uncharacterized protein family UPF0016 Patl_2415 PF00005 ABC transporter Patl_2416 PF00528 Binding-protein-dependent transport system inner membrane component Patl_2417 PF00005 ABC transporter Patl_2418 PF03793 PASTA domain Patl_2418 PF00069 Protein kinase domain Patl_2419 PF07690 Major Facilitator Superfamily Patl_2420 PF00962 Adenosine/AMP deaminase Patl_2421 PF00860 Permease family Patl_2423 PF08362 YcdC-like protein, C-terminal region Patl_2423 PF00440 Bacterial regulatory proteins, tetR family Patl_2424 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Patl_2424 PF00111 2Fe-2S iron-sulfur cluster binding domain Patl_2424 PF01799 [2Fe-2S] binding domain Patl_2424 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Patl_2425 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Patl_2425 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Patl_2428 PF00576 HIUase/Transthyretin family Patl_2429 PF01979 Amidohydrolase family Patl_2431 PF04299 Putative FMN-binding domain Patl_2433 PF10017 Histidine-specific methyltransferase, SAM-dependent Patl_2434 PF03781 Sulfatase-modifying factor enzyme 1 Patl_2435 PF00391 PEP-utilising enzyme, mobile domain Patl_2435 PF01370 NAD dependent epimerase/dehydratase family Patl_2438 PF00270 DEAD/DEAH box helicase Patl_2438 PF00271 Helicase conserved C-terminal domain Patl_2445 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Patl_2448 PF01066 CDP-alcohol phosphatidyltransferase Patl_2449 PF01541 GIY-YIG catalytic domain Patl_2449 PF08459 UvrC Helix-hairpin-helix N-terminal Patl_2449 PF02151 UvrB/uvrC motif Patl_2450 PF00072 Response regulator receiver domain Patl_2450 PF00196 Bacterial regulatory proteins, luxR family Patl_2451 PF01027 Inhibitor of apoptosis-promoting Bax1 Patl_2452 PF02635 DsrE/DsrF-like family Patl_2453 PF02635 DsrE/DsrF-like family Patl_2455 PF04358 DsrC like protein Patl_2456 PF02403 Seryl-tRNA synthetase N-terminal domain Patl_2456 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Patl_2457 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Patl_2458 PF12002 MgsA AAA+ ATPase C terminal Patl_2458 PF16193 AAA C-terminal domain Patl_2458 PF00004 ATPase family associated with various cellular activities (AAA) Patl_2459 PF03548 Outer membrane lipoprotein carrier protein LolA Patl_2460 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Patl_2460 PF17854 FtsK alpha domain Patl_2460 PF01580 FtsK/SpoIIIE family Patl_2460 PF09397 Ftsk gamma domain Patl_2461 PF01037 Lrp/AsnC ligand binding domain Patl_2462 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Patl_2462 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Patl_2463 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Patl_2464 PF18073 Rubredoxin metal binding domain Patl_2465 PF00216 Bacterial DNA-binding protein Patl_2466 PF00575 S1 RNA binding domain Patl_2467 PF02224 Cytidylate kinase Patl_2468 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Patl_2469 PF00266 Aminotransferase class-V Patl_2470 PF00521 DNA gyrase/topoisomerase IV, subunit A Patl_2470 PF03989 DNA gyrase C-terminal domain, beta-propeller Patl_2472 PF13419 Haloacid dehalogenase-like hydrolase Patl_2473 PF00317 Ribonucleotide reductase, all-alpha domain Patl_2473 PF03477 ATP cone domain Patl_2473 PF02867 Ribonucleotide reductase, barrel domain Patl_2474 PF00268 Ribonucleotide reductase, small chain Patl_2475 PF00111 2Fe-2S iron-sulfur cluster binding domain Patl_2476 PF01259 SAICAR synthetase Patl_2477 PF06804 NlpB/DapX lipoprotein Patl_2478 PF00701 Dihydrodipicolinate synthetase family Patl_2480 PF00578 AhpC/TSA family Patl_2481 PF01594 AI-2E family transporter Patl_2482 PF01435 Peptidase family M48 Patl_2484 PF03960 ArsC family Patl_2485 PF03358 NADPH-dependent FMN reductase Patl_2487 PF00308 Bacterial dnaA protein Patl_2489 PF02769 AIR synthase related protein, C-terminal domain Patl_2489 PF00586 AIR synthase related protein, N-terminal domain Patl_2490 PF00551 Formyl transferase Patl_2492 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_2492 PF09317 Domain of unknown function (DUF1974) Patl_2492 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_2492 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_2493 PF00216 Bacterial DNA-binding protein Patl_2494 PF03483 B3/4 domain Patl_2494 PF03484 tRNA synthetase B5 domain Patl_2494 PF03147 Ferredoxin-fold anticodon binding domain Patl_2494 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Patl_2494 PF01588 Putative tRNA binding domain Patl_2495 PF01409 tRNA synthetases class II core domain (F) Patl_2495 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Patl_2496 PF00453 Ribosomal protein L20 Patl_2497 PF01632 Ribosomal protein L35 Patl_2498 PF05198 Translation initiation factor IF-3, N-terminal domain Patl_2498 PF00707 Translation initiation factor IF-3, C-terminal domain Patl_2499 PF03129 Anticodon binding domain Patl_2499 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Patl_2499 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Patl_2499 PF02824 TGS domain Patl_2505 PF02028 BCCT, betaine/carnitine/choline family transporter Patl_2510 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Patl_2511 PF01799 [2Fe-2S] binding domain Patl_2511 PF00111 2Fe-2S iron-sulfur cluster binding domain Patl_2513 PF13478 XdhC Rossmann domain Patl_2513 PF02625 XdhC and CoxI family Patl_2516 PF00158 Sigma-54 interaction domain Patl_2516 PF01590 GAF domain Patl_2517 PF00291 Pyridoxal-phosphate dependent enzyme Patl_2519 PF06224 Winged helix DNA-binding domain Patl_2521 PF00478 IMP dehydrogenase / GMP reductase domain Patl_2521 PF00571 CBS domain Patl_2524 PF01132 Elongation factor P (EF-P) OB domain Patl_2524 PF08207 Elongation factor P (EF-P) KOW-like domain Patl_2524 PF09285 Elongation factor P, C-terminal Patl_2526 PF00255 Glutathione peroxidase Patl_2527 PF02525 Flavodoxin-like fold Patl_2528 PF00005 ABC transporter Patl_2529 PF00196 Bacterial regulatory proteins, luxR family Patl_2529 PF00072 Response regulator receiver domain Patl_2530 PF02885 Glycosyl transferase family, helical bundle domain Patl_2530 PF00591 Glycosyl transferase family, a/b domain Patl_2531 PF10414 Sirohaem synthase dimerisation region Patl_2531 PF14824 Sirohaem biosynthesis protein central Patl_2531 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Patl_2532 PF00384 Molybdopterin oxidoreductase Patl_2532 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Patl_2532 PF01568 Molydopterin dinucleotide binding domain Patl_2532 PF04324 BFD-like [2Fe-2S] binding domain Patl_2533 PF13806 Rieske-like [2Fe-2S] domain Patl_2534 PF18267 Rubredoxin NAD+ reductase C-terminal domain Patl_2534 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Patl_2534 PF13806 Rieske-like [2Fe-2S] domain Patl_2534 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Patl_2534 PF07992 Pyridine nucleotide-disulphide oxidoreductase Patl_2534 PF04324 BFD-like [2Fe-2S] binding domain Patl_2536 PF00899 ThiF family Patl_2537 PF00994 Probable molybdopterin binding domain Patl_2537 PF03454 MoeA C-terminal region (domain IV) Patl_2537 PF03453 MoeA N-terminal region (domain I and II) Patl_2538 PF01554 MatE Patl_2539 PF00144 Beta-lactamase Patl_2544 PF01627 Hpt domain Patl_2544 PF00512 His Kinase A (phospho-acceptor) domain Patl_2544 PF00072 Response regulator receiver domain Patl_2544 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_2544 PF00672 HAMP domain Patl_2544 PF17149 Periplasmic sensor domain found in signal transduction proteins Patl_2550 PF13378 Enolase C-terminal domain-like Patl_2550 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Patl_2551 PF08240 Alcohol dehydrogenase GroES-like domain Patl_2551 PF00107 Zinc-binding dehydrogenase Patl_2553 PF00171 Aldehyde dehydrogenase family Patl_2555 PF08241 Methyltransferase domain Patl_2556 PF00155 Aminotransferase class I and II Patl_2557 PF06968 Biotin and Thiamin Synthesis associated domain Patl_2557 PF04055 Radical SAM superfamily Patl_2559 PF13369 Transglutaminase-like superfamily Patl_2560 PF04247 Invasion gene expression up-regulator, SirB Patl_2561 PF11849 Domain of unknown function (DUF3369) Patl_2562 PF13847 Methyltransferase domain Patl_2562 PF17827 PrmC N-terminal domain Patl_2563 PF00472 RF-1 domain Patl_2563 PF03462 PCRF domain Patl_2564 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Patl_2564 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Patl_2564 PF01488 Shikimate / quinate 5-dehydrogenase Patl_2565 PF03550 Outer membrane lipoprotein LolB Patl_2566 PF08544 GHMP kinases C terminal Patl_2566 PF00288 GHMP kinases N terminal domain Patl_2567 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Patl_2567 PF14572 Phosphoribosyl synthetase-associated domain Patl_2568 PF00924 Mechanosensitive ion channel Patl_2569 PF01386 Ribosomal L25p family Patl_2569 PF14693 Ribosomal protein TL5, C-terminal domain Patl_2570 PF01195 Peptidyl-tRNA hydrolase Patl_2571 PF06071 Protein of unknown function (DUF933) Patl_2571 PF01926 50S ribosome-binding GTPase Patl_2575 PF01235 Sodium:alanine symporter family Patl_2576 PF03358 NADPH-dependent FMN reductase Patl_2578 PF01494 FAD binding domain Patl_2579 PF00497 Bacterial extracellular solute-binding proteins, family 3 Patl_2579 PF00072 Response regulator receiver domain Patl_2579 PF00989 PAS fold Patl_2579 PF01627 Hpt domain Patl_2579 PF00512 His Kinase A (phospho-acceptor) domain Patl_2579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_2581 PF03707 Bacterial signalling protein N terminal repeat Patl_2581 PF00563 EAL domain Patl_2581 PF00990 Diguanylate cyclase, GGDEF domain Patl_2587 PF05199 GMC oxidoreductase Patl_2587 PF00732 GMC oxidoreductase Patl_2588 PF00171 Aldehyde dehydrogenase family Patl_2589 PF13977 BetI-type transcriptional repressor, C-terminal Patl_2589 PF00440 Bacterial regulatory proteins, tetR family Patl_2590 PF00871 Acetokinase family Patl_2591 PF01515 Phosphate acetyl/butaryl transferase Patl_2591 PF07085 DRTGG domain Patl_2592 PF00365 Phosphofructokinase Patl_2593 PF00300 Histidine phosphatase superfamily (branch 1) Patl_2594 PF00391 PEP-utilising enzyme, mobile domain Patl_2594 PF02896 PEP-utilising enzyme, TIM barrel domain Patl_2594 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Patl_2595 PF00654 Voltage gated chloride channel Patl_2596 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Patl_2596 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Patl_2599 PF12419 SNF2 Helicase protein Patl_2599 PF00271 Helicase conserved C-terminal domain Patl_2599 PF00176 SNF2 family N-terminal domain Patl_2601 PF01799 [2Fe-2S] binding domain Patl_2601 PF00111 2Fe-2S iron-sulfur cluster binding domain Patl_2602 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Patl_2604 PF07715 TonB-dependent Receptor Plug Domain Patl_2604 PF00593 TonB dependent receptor Patl_2608 PF00902 Sec-independent protein translocase protein (TatC) Patl_2609 PF02416 mttA/Hcf106 family Patl_2610 PF02416 mttA/Hcf106 family Patl_2613 PF01734 Patatin-like phospholipase Patl_2616 PF00144 Beta-lactamase Patl_2617 PF00892 EamA-like transporter family Patl_2618 PF03466 LysR substrate binding domain Patl_2618 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_2622 PF01965 DJ-1/PfpI family Patl_2622 PF12833 Helix-turn-helix domain Patl_2623 PF02627 Carboxymuconolactone decarboxylase family Patl_2624 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Patl_2624 PF00355 Rieske [2Fe-2S] domain Patl_2628 PF00313 'Cold-shock' DNA-binding domain Patl_2635 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Patl_2637 PF08240 Alcohol dehydrogenase GroES-like domain Patl_2637 PF00107 Zinc-binding dehydrogenase Patl_2638 PF16925 Tetracyclin repressor-like, C-terminal domain Patl_2638 PF00440 Bacterial regulatory proteins, tetR family Patl_2639 PF08240 Alcohol dehydrogenase GroES-like domain Patl_2639 PF00107 Zinc-binding dehydrogenase Patl_2640 PF17992 Agarase CBM like domain Patl_2640 PF02449 Beta-galactosidase Patl_2641 PF08450 SMP-30/Gluconolactonase/LRE-like region Patl_2642 PF17992 Agarase CBM like domain Patl_2642 PF02449 Beta-galactosidase Patl_2643 PF01081 KDPG and KHG aldolase Patl_2644 PF00294 pfkB family carbohydrate kinase Patl_2645 PF07690 Major Facilitator Superfamily Patl_2646 PF13378 Enolase C-terminal domain-like Patl_2646 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Patl_2648 PF03372 Endonuclease/Exonuclease/phosphatase family Patl_2651 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_2651 PF03466 LysR substrate binding domain Patl_2656 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_2657 PF00331 Glycosyl hydrolase family 10 Patl_2659 PF02321 Outer membrane efflux protein Patl_2660 PF00664 ABC transporter transmembrane region Patl_2660 PF00005 ABC transporter Patl_2660 PF03412 Peptidase C39 family Patl_2661 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Patl_2661 PF00529 HlyD membrane-fusion protein of T1SS Patl_2664 PF00072 Response regulator receiver domain Patl_2664 PF09308 LuxQ, periplasmic Patl_2664 PF00512 His Kinase A (phospho-acceptor) domain Patl_2664 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_2665 PF00563 EAL domain Patl_2665 PF13426 PAS domain Patl_2665 PF00990 Diguanylate cyclase, GGDEF domain Patl_2666 PF00291 Pyridoxal-phosphate dependent enzyme Patl_2667 PF01544 CorA-like Mg2+ transporter protein Patl_2668 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Patl_2668 PF02874 ATP synthase alpha/beta family, beta-barrel domain Patl_2672 PF00119 ATP synthase A chain Patl_2673 PF00137 ATP synthase subunit C Patl_2674 PF00430 ATP synthase B/B' CF(0) Patl_2675 PF02874 ATP synthase alpha/beta family, beta-barrel domain Patl_2675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Patl_2675 PF00306 ATP synthase alpha/beta chain, C terminal domain Patl_2676 PF00231 ATP synthase Patl_2677 PF02627 Carboxymuconolactone decarboxylase family Patl_2678 PF00563 EAL domain Patl_2678 PF00990 Diguanylate cyclase, GGDEF domain Patl_2678 PF03707 Bacterial signalling protein N terminal repeat Patl_2679 PF00356 Bacterial regulatory proteins, lacI family Patl_2681 PF00356 Bacterial regulatory proteins, lacI family Patl_2682 PF01263 Aldose 1-epimerase Patl_2683 PF00474 Sodium:solute symporter family Patl_2686 PF00732 GMC oxidoreductase Patl_2686 PF05199 GMC oxidoreductase Patl_2688 PF03825 Nucleoside H+ symporter Patl_2690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Patl_2690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Patl_2691 PF00356 Bacterial regulatory proteins, lacI family Patl_2695 PF00884 Sulfatase Patl_2695 PF16347 Domain of unknown function (DUF4976) Patl_2696 PF00583 Acetyltransferase (GNAT) family Patl_2699 PF00325 Bacterial regulatory proteins, crp family Patl_2699 PF00027 Cyclic nucleotide-binding domain Patl_2701 PF00593 TonB dependent receptor Patl_2701 PF07715 TonB-dependent Receptor Plug Domain Patl_2703 PF00990 Diguanylate cyclase, GGDEF domain Patl_2703 PF17151 Periplasmic sensor domain Patl_2704 PF03969 AFG1-like ATPase Patl_2705 PF00561 alpha/beta hydrolase fold Patl_2710 PF01593 Flavin containing amine oxidoreductase Patl_2711 PF07715 TonB-dependent Receptor Plug Domain Patl_2711 PF00593 TonB dependent receptor Patl_2713 PF02515 CoA-transferase family III Patl_2714 PF02515 CoA-transferase family III Patl_2717 PF03328 HpcH/HpaI aldolase/citrate lyase family Patl_2721 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Patl_2723 PF03279 Bacterial lipid A biosynthesis acyltransferase Patl_2725 PF00884 Sulfatase Patl_2726 PF00892 EamA-like transporter family Patl_2730 PF08241 Methyltransferase domain Patl_2732 PF00857 Isochorismatase family Patl_2752 PF00378 Enoyl-CoA hydratase/isomerase Patl_2752 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Patl_2752 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Patl_2756 PF00593 TonB dependent receptor Patl_2756 PF07715 TonB-dependent Receptor Plug Domain Patl_2759 PF00107 Zinc-binding dehydrogenase Patl_2759 PF16884 N-terminal domain of oxidoreductase Patl_2760 PF13417 Glutathione S-transferase, N-terminal domain Patl_2762 PF00682 HMGL-like Patl_2763 PF02515 CoA-transferase family III Patl_2764 PF00694 Aconitase C-terminal domain Patl_2765 PF00330 Aconitase family (aconitate hydratase) Patl_2767 PF02913 FAD linked oxidases, C-terminal domain Patl_2767 PF01565 FAD binding domain Patl_2768 PF07702 UTRA domain Patl_2768 PF00392 Bacterial regulatory proteins, gntR family Patl_2772 PF00881 Nitroreductase family Patl_2775 PF02687 FtsX-like permease family Patl_2775 PF12704 MacB-like periplasmic core domain Patl_2775 PF00005 ABC transporter Patl_2776 PF02687 FtsX-like permease family Patl_2776 PF00005 ABC transporter Patl_2776 PF12704 MacB-like periplasmic core domain Patl_2778 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Patl_2779 PF18030 RimK PreATP-grasp domain Patl_2779 PF08443 RimK-like ATP-grasp domain Patl_2781 PF00732 GMC oxidoreductase Patl_2781 PF05199 GMC oxidoreductase Patl_2782 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Patl_2782 PF00326 Prolyl oligopeptidase family Patl_2786 PF01432 Peptidase family M3 Patl_2787 PF07687 Peptidase dimerisation domain Patl_2787 PF01546 Peptidase family M20/M25/M40 Patl_2788 PF03466 LysR substrate binding domain Patl_2788 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_2790 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Patl_2790 PF13378 Enolase C-terminal domain-like Patl_2793 PF04349 Periplasmic glucan biosynthesis protein, MdoG Patl_2794 PF07840 FadR C-terminal domain Patl_2794 PF00392 Bacterial regulatory proteins, gntR family Patl_2795 PF06450 Bacterial Na+/H+ antiporter B (NhaB) Patl_2796 PF02600 Disulfide bond formation protein DsbB Patl_2797 PF04244 Deoxyribodipyrimidine photo-lyase-related protein Patl_2798 PF03692 Putative zinc- or iron-chelating domain Patl_2800 PF01557 Fumarylacetoacetate (FAA) hydrolase family Patl_2801 PF13406 Transglycosylase SLT domain Patl_2802 PF05166 YcgL domain Patl_2803 PF00570 HRDC domain Patl_2803 PF01612 3'-5' exonuclease Patl_2804 PF00501 AMP-binding enzyme Patl_2804 PF13193 AMP-binding enzyme C-terminal domain Patl_2808 PF00814 Glycoprotease family Patl_2809 PF06733 DEAD_2 Patl_2809 PF13307 Helicase C-terminal domain Patl_2810 PF11896 Domain of unknown function (DUF3416) Patl_2812 PF02107 Flagellar L-ring protein Patl_2814 PF02810 SEC-C motif Patl_2814 PF01043 SecA preprotein cross-linking domain Patl_2814 PF07517 SecA DEAD-like domain Patl_2814 PF07516 SecA Wing and Scaffold domain Patl_2815 PF02574 Homocysteine S-methyltransferase Patl_2818 PF00512 His Kinase A (phospho-acceptor) domain Patl_2818 PF01627 Hpt domain Patl_2818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_2818 PF00672 HAMP domain Patl_2818 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Patl_2818 PF00072 Response regulator receiver domain Patl_2824 PF01479 S4 domain Patl_2824 PF00849 RNA pseudouridylate synthase Patl_2825 PF04079 Segregation and condensation complex subunit ScpB Patl_2826 PF02616 Segregation and condensation protein ScpA Patl_2827 PF01300 Telomere recombination Patl_2828 PF02811 PHP domain Patl_2829 PF04715 Anthranilate synthase component I, N terminal region Patl_2829 PF00425 chorismate binding enzyme Patl_2830 PF00117 Glutamine amidotransferase class-I Patl_2831 PF02885 Glycosyl transferase family, helical bundle domain Patl_2831 PF00591 Glycosyl transferase family, a/b domain Patl_2832 PF00218 Indole-3-glycerol phosphate synthase Patl_2832 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Patl_2833 PF00291 Pyridoxal-phosphate dependent enzyme Patl_2835 PF03795 YCII-related domain Patl_2836 PF00472 RF-1 domain Patl_2840 PF00072 Response regulator receiver domain Patl_2840 PF00486 Transcriptional regulatory protein, C terminal Patl_2841 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_2841 PF08918 PhoQ Sensor Patl_2842 PF05552 Conserved TM helix Patl_2842 PF00924 Mechanosensitive ion channel Patl_2844 PF01568 Molydopterin dinucleotide binding domain Patl_2844 PF00384 Molybdopterin oxidoreductase Patl_2845 PF02634 FdhD/NarQ family Patl_2849 PF00753 Metallo-beta-lactamase superfamily Patl_2849 PF12706 Beta-lactamase superfamily domain Patl_2857 PF13302 Acetyltransferase (GNAT) domain Patl_2859 PF00128 Alpha amylase, catalytic domain Patl_2859 PF02806 Alpha amylase, C-terminal all-beta domain Patl_2860 PF07702 UTRA domain Patl_2860 PF00392 Bacterial regulatory proteins, gntR family Patl_2862 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Patl_2863 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Patl_2865 PF07715 TonB-dependent Receptor Plug Domain Patl_2865 PF00593 TonB dependent receptor Patl_2868 PF13411 MerR HTH family regulatory protein Patl_2869 PF00873 AcrB/AcrD/AcrF family Patl_2870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Patl_2871 PF13533 Biotin-lipoyl like Patl_2872 PF08361 MAATS-type transcriptional repressor, C-terminal region Patl_2872 PF00440 Bacterial regulatory proteins, tetR family Patl_2875 PF03601 Conserved hypothetical protein 698 Patl_2877 PF00248 Aldo/keto reductase family Patl_2880 PF01634 ATP phosphoribosyltransferase Patl_2880 PF08029 HisG, C-terminal domain Patl_2881 PF00815 Histidinol dehydrogenase Patl_2882 PF00155 Aminotransferase class I and II Patl_2883 PF00475 Imidazoleglycerol-phosphate dehydratase Patl_2884 PF00117 Glutamine amidotransferase class-I Patl_2885 PF00977 Histidine biosynthesis protein Patl_2886 PF01063 Amino-transferase class IV Patl_2887 PF00977 Histidine biosynthesis protein Patl_2888 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Patl_2888 PF01502 Phosphoribosyl-AMP cyclohydrolase Patl_2889 PF01292 Prokaryotic cytochrome b561 Patl_2890 PF04264 YceI-like domain Patl_2891 PF00011 Hsp20/alpha crystallin family Patl_2892 PF01124 MAPEG family Patl_2893 PF05191 Adenylate kinase, active site lid Patl_2894 PF00183 Hsp90 protein Patl_2894 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_2895 PF02132 RecR protein Patl_2895 PF13662 Toprim domain Patl_2896 PF02575 YbaB/EbfC DNA-binding family Patl_2897 PF12170 DNA polymerase III tau subunit V interacting with alpha Patl_2897 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Patl_2897 PF12169 DNA polymerase III subunits gamma and tau domain III Patl_2898 PF00156 Phosphoribosyl transferase domain Patl_2900 PF05114 Protein of unknown function (DUF692) Patl_2903 PF03702 Anhydro-N-acetylmuramic acid kinase Patl_2904 PF07715 TonB-dependent Receptor Plug Domain Patl_2904 PF00593 TonB dependent receptor Patl_2908 PF07683 Cobalamin synthesis protein cobW C-terminal domain Patl_2908 PF02492 CobW/HypB/UreG, nucleotide-binding domain Patl_2909 PF01594 AI-2E family transporter Patl_2910 PF02152 Dihydroneopterin aldolase Patl_2911 PF01370 NAD dependent epimerase/dehydratase family Patl_2911 PF08338 Domain of unknown function (DUF1731) Patl_2913 PF00005 ABC transporter Patl_2914 PF13472 GDSL-like Lipase/Acylhydrolase family Patl_2915 PF01207 Dihydrouridine synthase (Dus) Patl_2916 PF05987 Bacterial protein of unknown function (DUF898) Patl_2919 PF00749 tRNA synthetases class I (E and Q), catalytic domain Patl_2920 PF00072 Response regulator receiver domain Patl_2920 PF00486 Transcriptional regulatory protein, C terminal Patl_2921 PF00266 Aminotransferase class-V Patl_2923 PF00108 Thiolase, N-terminal domain Patl_2923 PF02803 Thiolase, C-terminal domain Patl_2924 PF09278 MerR, DNA binding Patl_2924 PF00376 MerR family regulatory protein Patl_2925 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_2925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_2925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_2926 PF01039 Carboxyl transferase domain Patl_2927 PF00378 Enoyl-CoA hydratase/isomerase Patl_2928 PF00289 Biotin carboxylase, N-terminal domain Patl_2928 PF02785 Biotin carboxylase C-terminal domain Patl_2928 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Patl_2928 PF00364 Biotin-requiring enzyme Patl_2929 PF00682 HMGL-like Patl_2932 PF00483 Nucleotidyl transferase Patl_2934 PF07690 Major Facilitator Superfamily Patl_2936 PF08668 HDOD domain Patl_2937 PF16331 TolA binding protein trimerisation Patl_2937 PF13174 Tetratricopeptide repeat Patl_2938 PF00691 OmpA family Patl_2939 PF07676 WD40-like Beta Propeller Repeat Patl_2939 PF04052 TolB amino-terminal domain Patl_2941 PF02472 Biopolymer transport protein ExbD/TolR Patl_2942 PF01618 MotA/TolQ/ExbB proton channel family Patl_2943 PF03061 Thioesterase superfamily Patl_2944 PF05491 RuvB C-terminal winged helix domain Patl_2944 PF05496 Holliday junction DNA helicase RuvB P-loop domain Patl_2944 PF17864 RuvB AAA lid domain Patl_2945 PF01330 RuvA N terminal domain Patl_2945 PF07499 RuvA, C-terminal domain Patl_2946 PF02075 Crossover junction endodeoxyribonuclease RuvC Patl_2947 PF00293 NUDIX domain Patl_2948 PF01336 OB-fold nucleic acid binding domain Patl_2948 PF02938 GAD domain Patl_2948 PF00152 tRNA synthetases class II (D, K and N) Patl_2950 PF12679 ABC-2 family transporter protein Patl_2951 PF00005 ABC transporter Patl_2955 PF13537 Glutamine amidotransferase domain Patl_2955 PF00733 Asparagine synthase Patl_2957 PF00107 Zinc-binding dehydrogenase Patl_2957 PF08240 Alcohol dehydrogenase GroES-like domain Patl_2960 PF04055 Radical SAM superfamily Patl_2961 PF06508 Queuosine biosynthesis protein QueC Patl_2963 PF17757 UvrB interaction domain Patl_2963 PF02151 UvrB/uvrC motif Patl_2963 PF04851 Type III restriction enzyme, res subunit Patl_2963 PF12344 Ultra-violet resistance protein B Patl_2963 PF00271 Helicase conserved C-terminal domain Patl_2964 PF01554 MatE Patl_2965 PF02508 Rnf-Nqr subunit, membrane protein Patl_2966 PF04060 Putative Fe-S cluster Patl_2967 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Patl_2967 PF13237 4Fe-4S dicluster domain Patl_2967 PF13375 RnfC Barrel sandwich hybrid domain Patl_2967 PF10531 SLBB domain Patl_2968 PF03116 NQR2, RnfD, RnfE family Patl_2969 PF04205 FMN-binding domain Patl_2970 PF02508 Rnf-Nqr subunit, membrane protein Patl_2971 PF10576 Iron-sulfur binding domain of endonuclease III Patl_2971 PF00633 Helix-hairpin-helix motif Patl_2971 PF00730 HhH-GPD superfamily base excision DNA repair protein Patl_2974 PF00633 Helix-hairpin-helix motif Patl_2974 PF10576 Iron-sulfur binding domain of endonuclease III Patl_2974 PF00730 HhH-GPD superfamily base excision DNA repair protein Patl_2979 PF00730 HhH-GPD superfamily base excision DNA repair protein Patl_2979 PF00633 Helix-hairpin-helix motif Patl_2979 PF10576 Iron-sulfur binding domain of endonuclease III Patl_2980 PF09962 Uncharacterized conserved protein (DUF2196) Patl_2986 PF03544 Gram-negative bacterial TonB protein C-terminal Patl_2987 PF02472 Biopolymer transport protein ExbD/TolR Patl_2988 PF01618 MotA/TolQ/ExbB proton channel family Patl_2989 PF01618 MotA/TolQ/ExbB proton channel family Patl_2995 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Patl_2995 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Patl_2996 PF01037 Lrp/AsnC ligand binding domain Patl_2997 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Patl_2998 PF18024 Helix-turn-helix domain Patl_2998 PF00158 Sigma-54 interaction domain Patl_2999 PF00351 Biopterin-dependent aromatic amino acid hydroxylase Patl_3000 PF05128 Domain of unknown function (DUF697) Patl_3001 PF04317 YcjX-like family, DUF463 Patl_3003 PF06667 Phage shock protein B Patl_3004 PF04012 PspA/IM30 family Patl_3005 PF02954 Bacterial regulatory protein, Fis family Patl_3005 PF00158 Sigma-54 interaction domain Patl_3006 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Patl_3007 PF00528 Binding-protein-dependent transport system inner membrane component Patl_3008 PF00528 Binding-protein-dependent transport system inner membrane component Patl_3008 PF12911 N-terminal TM domain of oligopeptide transport permease C Patl_3009 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Patl_3009 PF00005 ABC transporter Patl_3010 PF00005 ABC transporter Patl_3011 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Patl_3012 PF00682 HMGL-like Patl_3012 PF00364 Biotin-requiring enzyme Patl_3012 PF02436 Conserved carboxylase domain Patl_3013 PF04277 Oxaloacetate decarboxylase, gamma chain Patl_3014 PF02599 Global regulator protein family Patl_3015 PF02272 DHHA1 domain Patl_3015 PF01411 tRNA synthetases class II (A) Patl_3015 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Patl_3016 PF02631 RecX family Patl_3021 PF04204 Homoserine O-succinyltransferase Patl_3023 PF01584 CheW-like domain Patl_3025 PF13614 AAA domain Patl_3026 PF01339 CheB methylesterase Patl_3026 PF00072 Response regulator receiver domain Patl_3027 PF01627 Hpt domain Patl_3027 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3027 PF07194 P2 response regulator binding domain Patl_3027 PF01584 CheW-like domain Patl_3027 PF02895 Signal transducing histidine kinase, homodimeric domain Patl_3028 PF04344 Chemotaxis phosphatase, CheZ Patl_3029 PF00072 Response regulator receiver domain Patl_3030 PF04542 Sigma-70 region 2 Patl_3030 PF04539 Sigma-70 region 3 Patl_3030 PF04545 Sigma-70, region 4 Patl_3031 PF10609 NUBPL iron-transfer P-loop NTPase Patl_3032 PF00448 SRP54-type protein, GTPase domain Patl_3033 PF00771 FHIPEP family Patl_3034 PF01312 FlhB HrpN YscU SpaS Family Patl_3035 PF01311 Bacterial export proteins, family 1 Patl_3036 PF01313 Bacterial export proteins, family 3 Patl_3037 PF00813 FliP family Patl_3038 PF04347 Flagellar biosynthesis protein, FliO Patl_3039 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Patl_3040 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Patl_3040 PF02154 Flagellar motor switch protein FliM Patl_3044 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Patl_3044 PF18269 T3SS EscN ATPase C-terminal domain Patl_3046 PF14842 FliG N-terminal domain Patl_3046 PF14841 FliG middle domain Patl_3046 PF01706 FliG C-terminal domain Patl_3047 PF01514 Secretory protein of YscJ/FliF family Patl_3047 PF08345 Flagellar M-ring protein C-terminal Patl_3048 PF02049 Flagellar hook-basal body complex protein FliE Patl_3049 PF00072 Response regulator receiver domain Patl_3049 PF02954 Bacterial regulatory protein, Fis family Patl_3049 PF00158 Sigma-54 interaction domain Patl_3050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3050 PF00512 His Kinase A (phospho-acceptor) domain Patl_3050 PF00989 PAS fold Patl_3051 PF00158 Sigma-54 interaction domain Patl_3051 PF00072 Response regulator receiver domain Patl_3051 PF02954 Bacterial regulatory protein, Fis family Patl_3052 PF00669 Bacterial flagellin N-terminal helical region Patl_3052 PF00700 Bacterial flagellin C-terminal helical region Patl_3055 PF04989 Cephalosporin hydroxylase Patl_3057 PF00551 Formyl transferase Patl_3059 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Patl_3060 PF08484 C-methyltransferase C-terminal domain Patl_3060 PF08421 Putative zinc binding domain Patl_3061 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Patl_3062 PF16363 GDP-mannose 4,6 dehydratase Patl_3063 PF00483 Nucleotidyl transferase Patl_3065 PF00535 Glycosyl transferase family 2 Patl_3066 PF00535 Glycosyl transferase family 2 Patl_3067 PF08241 Methyltransferase domain Patl_3069 PF03275 UDP-galactopyranose mutase Patl_3070 PF00535 Glycosyl transferase family 2 Patl_3076 PF03102 NeuB family Patl_3076 PF08666 SAF domain Patl_3078 PF02348 Cytidylyltransferase Patl_3079 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Patl_3080 PF02719 Polysaccharide biosynthesis protein Patl_3082 PF02561 Flagellar protein FliS Patl_3083 PF07196 Flagellin hook IN motif Patl_3083 PF07195 Flagellar hook-associated protein 2 C-terminus Patl_3083 PF02465 Flagellar hook-associated protein 2 N-terminus Patl_3084 PF03646 FlaG protein Patl_3085 PF00669 Bacterial flagellin N-terminal helical region Patl_3085 PF00700 Bacterial flagellin C-terminal helical region Patl_3085 PF07196 Flagellin hook IN motif Patl_3087 PF07196 Flagellin hook IN motif Patl_3087 PF00700 Bacterial flagellin C-terminal helical region Patl_3087 PF00669 Bacterial flagellin N-terminal helical region Patl_3088 PF00669 Bacterial flagellin N-terminal helical region Patl_3088 PF00700 Bacterial flagellin C-terminal helical region Patl_3088 PF07196 Flagellin hook IN motif Patl_3090 PF00669 Bacterial flagellin N-terminal helical region Patl_3091 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Patl_3091 PF00460 Flagella basal body rod protein Patl_3092 PF10135 Rod binding protein Patl_3092 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Patl_3093 PF02119 Flagellar P-ring protein Patl_3094 PF02107 Flagellar L-ring protein Patl_3095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Patl_3095 PF00460 Flagella basal body rod protein Patl_3096 PF00460 Flagella basal body rod protein Patl_3096 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Patl_3097 PF07559 Flagellar basal body protein FlaE Patl_3097 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Patl_3097 PF00460 Flagella basal body rod protein Patl_3098 PF03963 Flagellar hook capping protein - N-terminal region Patl_3098 PF13860 FlgD Ig-like domain Patl_3098 PF13861 FlgD Tudor-like domain Patl_3099 PF00460 Flagella basal body rod protein Patl_3099 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Patl_3100 PF00460 Flagella basal body rod protein Patl_3101 PF01739 CheR methyltransferase, SAM binding domain Patl_3101 PF03705 CheR methyltransferase, all-alpha domain Patl_3102 PF01584 CheW-like domain Patl_3102 PF00072 Response regulator receiver domain Patl_3109 PF07660 Secretin and TonB N terminus short domain Patl_3109 PF00593 TonB dependent receptor Patl_3109 PF07715 TonB-dependent Receptor Plug Domain Patl_3111 PF01433 Peptidase family M1 domain Patl_3113 PF02769 AIR synthase related protein, C-terminal domain Patl_3113 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Patl_3113 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Patl_3114 PF00497 Bacterial extracellular solute-binding proteins, family 3 Patl_3114 PF01464 Transglycosylase SLT domain Patl_3115 PF14437 MafB19-like deaminase Patl_3119 PF02540 NAD synthase Patl_3119 PF00958 GMP synthase C terminal domain Patl_3119 PF00117 Glutamine amidotransferase class-I Patl_3120 PF00571 CBS domain Patl_3120 PF00478 IMP dehydrogenase / GMP reductase domain Patl_3121 PF02601 Exonuclease VII, large subunit Patl_3121 PF13742 OB-fold nucleic acid binding domain Patl_3122 PF01926 50S ribosome-binding GTPase Patl_3122 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Patl_3123 PF13360 PQQ-like domain Patl_3124 PF09976 Tetratricopeptide repeat-like domain Patl_3125 PF03129 Anticodon binding domain Patl_3125 PF13393 Histidyl-tRNA synthetase Patl_3126 PF04551 GcpE protein Patl_3127 PF13464 Domain of unknown function (DUF4115) Patl_3129 PF04055 Radical SAM superfamily Patl_3130 PF00334 Nucleoside diphosphate kinase Patl_3132 PF13145 PPIC-type PPIASE domain Patl_3133 PF00216 Bacterial DNA-binding protein Patl_3134 PF02190 ATP-dependent protease La (LON) substrate-binding domain Patl_3134 PF05362 Lon protease (S16) C-terminal proteolytic domain Patl_3134 PF00004 ATPase family associated with various cellular activities (AAA) Patl_3135 PF06689 ClpX C4-type zinc finger Patl_3135 PF07724 AAA domain (Cdc48 subfamily) Patl_3135 PF10431 C-terminal, D2-small domain, of ClpB protein Patl_3136 PF00574 Clp protease Patl_3137 PF05697 Bacterial trigger factor protein (TF) Patl_3137 PF05698 Bacterial trigger factor protein (TF) C-terminus Patl_3137 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Patl_3138 PF10688 Bacterial inner membrane protein Patl_3139 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Patl_3139 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Patl_3144 PF00005 ABC transporter Patl_3146 PF01026 TatD related DNase Patl_3147 PF01243 Pyridoxamine 5'-phosphate oxidase Patl_3147 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Patl_3148 PF01926 50S ribosome-binding GTPase Patl_3148 PF07650 KH domain Patl_3149 PF00035 Double-stranded RNA binding motif Patl_3149 PF14622 Ribonuclease-III-like Patl_3150 PF10502 Signal peptidase, peptidase S26 Patl_3151 PF06421 GTP-binding protein LepA C-terminus Patl_3151 PF00009 Elongation factor Tu GTP binding domain Patl_3151 PF00679 Elongation factor G C-terminus Patl_3151 PF03144 Elongation factor Tu domain 2 Patl_3153 PF17188 MucB/RseB C-terminal domain Patl_3153 PF03888 MucB/RseB N-terminal domain Patl_3154 PF03872 Anti sigma-E protein RseA, N-terminal domain Patl_3154 PF03873 Anti sigma-E protein RseA, C-terminal domain Patl_3155 PF04542 Sigma-70 region 2 Patl_3155 PF08281 Sigma-70, region 4 Patl_3156 PF02910 Fumarate reductase flavoprotein C-term Patl_3156 PF00890 FAD binding domain Patl_3159 PF03937 Flavinator of succinate dehydrogenase Patl_3161 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Patl_3162 PF00543 Nitrogen regulatory protein P-II Patl_3163 PF02540 NAD synthase Patl_3168 PF00114 Pilin (bacterial filament) Patl_3168 PF07963 Prokaryotic N-terminal methylation motif Patl_3175 PF02401 LytB protein Patl_3176 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Patl_3177 PF01252 Signal peptidase (SPase) II Patl_3178 PF08264 Anticodon-binding domain of tRNA Patl_3178 PF00133 tRNA synthetases class I (I, L, M and V) Patl_3178 PF06827 Zinc finger found in FPG and IleRS Patl_3179 PF01687 Riboflavin kinase Patl_3179 PF06574 FAD synthetase Patl_3180 PF03023 Lipid II flippase MurJ Patl_3181 PF01649 Ribosomal protein S20 Patl_3182 PF04151 Bacterial pre-peptidase C-terminal domain Patl_3182 PF04389 Peptidase family M28 Patl_3183 PF00258 Flavodoxin Patl_3184 PF00849 RNA pseudouridylate synthase Patl_3185 PF04287 tRNA pseudouridine synthase C Patl_3192 PF07348 Syd protein (SUKH-2) Patl_3193 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Patl_3193 PF14489 QueF-like protein Patl_3194 PF11892 Domain of unknown function (DUF3412) Patl_3194 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases Patl_3194 PF03641 Possible lysine decarboxylase Patl_3197 PF18324 Hypothetical protein TT1725 Patl_3197 PF00180 Isocitrate/isopropylmalate dehydrogenase Patl_3199 PF00483 Nucleotidyl transferase Patl_3200 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Patl_3200 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Patl_3200 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Patl_3202 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF Patl_3204 PF06082 Exopolysaccharide biosynthesis protein YbjH Patl_3207 PF00535 Glycosyl transferase family 2 Patl_3211 PF01467 Cytidylyltransferase-like Patl_3216 PF00534 Glycosyl transferases group 1 Patl_3216 PF13439 Glycosyltransferase Family 4 Patl_3230 PF07963 Prokaryotic N-terminal methylation motif Patl_3230 PF08334 Type II secretion system (T2SS), protein G Patl_3231 PF00482 Type II secretion system (T2SS), protein F Patl_3232 PF00437 Type II/IV secretion system protein Patl_3232 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Patl_3236 PF00263 Bacterial type II and III secretion system protein Patl_3236 PF03958 Bacterial type II/III secretion system short domain Patl_3239 PF00005 ABC transporter Patl_3241 PF02563 Polysaccharide biosynthesis/export protein Patl_3241 PF10531 SLBB domain Patl_3243 PF00953 Glycosyl transferase family 4 Patl_3244 PF00854 POT family Patl_3246 PF16363 GDP-mannose 4,6 dehydratase Patl_3247 PF04333 MlaA lipoprotein Patl_3249 PF03918 Cytochrome C biogenesis protein Patl_3250 PF08534 Redoxin Patl_3251 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Patl_3251 PF01578 Cytochrome C assembly protein Patl_3252 PF03100 CcmE Patl_3253 PF04995 Heme exporter protein D (CcmD) Patl_3254 PF01578 Cytochrome C assembly protein Patl_3255 PF03379 CcmB protein Patl_3256 PF00005 ABC transporter Patl_3259 PF00154 recA bacterial DNA recombination protein Patl_3262 PF02464 Competence-damaged protein Patl_3263 PF05188 MutS domain II Patl_3263 PF01624 MutS domain I Patl_3263 PF05190 MutS family domain IV Patl_3263 PF00488 MutS domain V Patl_3263 PF05192 MutS domain III Patl_3264 PF00072 Response regulator receiver domain Patl_3264 PF00486 Transcriptional regulatory protein, C terminal Patl_3265 PF06418 CTP synthase N-terminus Patl_3265 PF00117 Glutamine amidotransferase class-I Patl_3266 PF00113 Enolase, C-terminal TIM barrel domain Patl_3266 PF03952 Enolase, N-terminal domain Patl_3268 PF08502 LeuA allosteric (dimerisation) domain Patl_3268 PF00682 HMGL-like Patl_3269 PF00180 Isocitrate/isopropylmalate dehydrogenase Patl_3270 PF00330 Aconitase family (aconitate hydratase) Patl_3271 PF00694 Aconitase C-terminal domain Patl_3272 PF00356 Bacterial regulatory proteins, lacI family Patl_3274 PF06165 Glycosyltransferase family 36 Patl_3274 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Patl_3281 PF13401 AAA domain Patl_3281 PF01471 Putative peptidoglycan binding domain Patl_3282 PF01966 HD domain Patl_3282 PF01743 Poly A polymerase head domain Patl_3282 PF12627 Probable RNA and SrmB- binding site of polymerase A Patl_3284 PF00271 Helicase conserved C-terminal domain Patl_3284 PF00270 DEAD/DEAH box helicase Patl_3287 PF01725 Ham1 family Patl_3288 PF06969 HemN C-terminal domain Patl_3288 PF04055 Radical SAM superfamily Patl_3289 PF01555 DNA methylase Patl_3293 PF04172 LrgB-like family Patl_3295 PF02954 Bacterial regulatory protein, Fis family Patl_3295 PF00072 Response regulator receiver domain Patl_3295 PF00158 Sigma-54 interaction domain Patl_3296 PF01627 Hpt domain Patl_3296 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3296 PF02895 Signal transducing histidine kinase, homodimeric domain Patl_3296 PF01584 CheW-like domain Patl_3296 PF07194 P2 response regulator binding domain Patl_3297 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Patl_3297 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Patl_3298 PF07690 Major Facilitator Superfamily Patl_3303 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_3303 PF03466 LysR substrate binding domain Patl_3304 PF13460 NAD(P)H-binding Patl_3306 PF02308 MgtC family Patl_3311 PF08281 Sigma-70, region 4 Patl_3311 PF04542 Sigma-70 region 2 Patl_3312 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_3312 PF03466 LysR substrate binding domain Patl_3313 PF07396 Phosphate-selective porin O and P Patl_3314 PF01895 PhoU domain Patl_3315 PF00005 ABC transporter Patl_3316 PF00528 Binding-protein-dependent transport system inner membrane component Patl_3317 PF00528 Binding-protein-dependent transport system inner membrane component Patl_3319 PF01384 Phosphate transporter family Patl_3320 PF01865 Protein of unknown function DUF47 Patl_3322 PF17941 Polyphosphate kinase C-terminal domain 1 Patl_3322 PF13089 Polyphosphate kinase N-terminal domain Patl_3322 PF02503 Polyphosphate kinase middle domain Patl_3322 PF13090 Polyphosphate kinase C-terminal domain 2 Patl_3323 PF02541 Ppx/GppA phosphatase family Patl_3327 PF00274 Fructose-bisphosphate aldolase class-I Patl_3328 PF00162 Phosphoglycerate kinase Patl_3329 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Patl_3329 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Patl_3330 PF02779 Transketolase, pyrimidine binding domain Patl_3330 PF02780 Transketolase, C-terminal domain Patl_3330 PF00456 Transketolase, thiamine diphosphate binding domain Patl_3331 PF02772 S-adenosylmethionine synthetase, central domain Patl_3331 PF02773 S-adenosylmethionine synthetase, C-terminal domain Patl_3331 PF00438 S-adenosylmethionine synthetase, N-terminal domain Patl_3332 PF01435 Peptidase family M48 Patl_3333 PF05552 Conserved TM helix Patl_3333 PF00924 Mechanosensitive ion channel Patl_3334 PF04452 RNA methyltransferase Patl_3338 PF08534 Redoxin Patl_3338 PF00462 Glutaredoxin Patl_3340 PF07072 Cell division protein Patl_3341 PF01121 Dephospho-CoA kinase Patl_3342 PF06750 Bacterial Peptidase A24 N-terminal domain Patl_3342 PF01478 Type IV leader peptidase family Patl_3343 PF00482 Type II secretion system (T2SS), protein F Patl_3344 PF07963 Prokaryotic N-terminal methylation motif Patl_3344 PF00114 Pilin (bacterial filament) Patl_3345 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Patl_3345 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Patl_3347 PF01510 N-acetylmuramoyl-L-alanine amidase Patl_3348 PF17113 Regulatory signalling modulator protein AmpE Patl_3349 PF00392 Bacterial regulatory proteins, gntR family Patl_3349 PF07729 FCD domain Patl_3350 PF17831 Pyruvate dehydrogenase E1 component middle domain Patl_3350 PF00456 Transketolase, thiamine diphosphate binding domain Patl_3351 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Patl_3351 PF02817 e3 binding domain Patl_3351 PF00364 Biotin-requiring enzyme Patl_3352 PF07992 Pyridine nucleotide-disulphide oxidoreductase Patl_3352 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Patl_3353 PF05649 Peptidase family M13 Patl_3353 PF01431 Peptidase family M13 Patl_3354 PF06945 Protein of unknown function (DUF1289) Patl_3355 PF00561 alpha/beta hydrolase fold Patl_3360 PF00990 Diguanylate cyclase, GGDEF domain Patl_3360 PF03707 Bacterial signalling protein N terminal repeat Patl_3360 PF00563 EAL domain Patl_3363 PF01118 Semialdehyde dehydrogenase, NAD binding domain Patl_3363 PF02774 Semialdehyde dehydrogenase, dimerisation domain Patl_3364 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Patl_3364 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Patl_3364 PF11890 Domain of unknown function (DUF3410) Patl_3366 PF00596 Class II Aldolase and Adducin N-terminal domain Patl_3367 PF00027 Cyclic nucleotide-binding domain Patl_3367 PF13545 Crp-like helix-turn-helix domain Patl_3370 PF00072 Response regulator receiver domain Patl_3370 PF00486 Transcriptional regulatory protein, C terminal Patl_3373 PF08448 PAS fold Patl_3373 PF00563 EAL domain Patl_3373 PF00990 Diguanylate cyclase, GGDEF domain Patl_3376 PF01551 Peptidase family M23 Patl_3376 PF01476 LysM domain Patl_3378 PF04245 37-kD nucleoid-associated bacterial protein Patl_3379 PF07208 Protein of unknown function (DUF1414) Patl_3380 PF00884 Sulfatase Patl_3380 PF11893 Domain of unknown function (DUF3413) Patl_3381 PF13847 Methyltransferase domain Patl_3383 PF00109 Beta-ketoacyl synthase, N-terminal domain Patl_3383 PF02801 Beta-ketoacyl synthase, C-terminal domain Patl_3384 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Patl_3384 PF01266 FAD dependent oxidoreductase Patl_3387 PF04315 Elongation factor P hydroxylase Patl_3394 PF14602 Hexapeptide repeat of succinyl-transferase Patl_3394 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle Patl_3395 PF01758 Sodium Bile acid symporter family Patl_3396 PF03358 NADPH-dependent FMN reductase Patl_3398 PF01022 Bacterial regulatory protein, arsR family Patl_3406 PF01053 Cys/Met metabolism PLP-dependent enzyme Patl_3411 PF00486 Transcriptional regulatory protein, C terminal Patl_3411 PF00072 Response regulator receiver domain Patl_3412 PF00512 His Kinase A (phospho-acceptor) domain Patl_3412 PF00672 HAMP domain Patl_3412 PF16750 Sensor domain of 2-component histidine kinase Patl_3412 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3415 PF00226 DnaJ domain Patl_3415 PF05099 Tellurite resistance protein TerB Patl_3416 PF00483 Nucleotidyl transferase Patl_3417 PF01636 Phosphotransferase enzyme family Patl_3418 PF03968 OstA-like protein Patl_3418 PF04453 LPS transport system D Patl_3419 PF00639 PPIC-type PPIASE domain Patl_3419 PF09312 SurA N-terminal domain Patl_3420 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Patl_3421 PF00398 Ribosomal RNA adenine dimethylase Patl_3422 PF04379 ApaG domain Patl_3423 PF00149 Calcineurin-like phosphoesterase Patl_3424 PF00672 HAMP domain Patl_3424 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Patl_3425 PF01842 ACT domain Patl_3425 PF00696 Amino acid kinase family Patl_3426 PF01425 Amidase Patl_3428 PF11791 Aconitate B N-terminal domain Patl_3428 PF06434 Aconitate hydratase 2 N-terminus Patl_3428 PF00330 Aconitase family (aconitate hydratase) Patl_3430 PF01965 DJ-1/PfpI family Patl_3431 PF04055 Radical SAM superfamily Patl_3431 PF11842 Domain of unknown function (DUF3362) Patl_3431 PF08497 Radical SAM N-terminal Patl_3432 PF13406 Transglycosylase SLT domain Patl_3433 PF01327 Polypeptide deformylase Patl_3434 PF00005 ABC transporter Patl_3434 PF00664 ABC transporter transmembrane region Patl_3435 PF00884 Sulfatase Patl_3435 PF08019 Phosphoethanolamine transferase EptA/EptB Patl_3436 PF00657 GDSL-like Lipase/Acylhydrolase Patl_3437 PF00563 EAL domain Patl_3437 PF00990 Diguanylate cyclase, GGDEF domain Patl_3437 PF03707 Bacterial signalling protein N terminal repeat Patl_3441 PF07715 TonB-dependent Receptor Plug Domain Patl_3441 PF00593 TonB dependent receptor Patl_3442 PF12320 Type 5 capsule protein repressor C-terminal domain Patl_3442 PF00149 Calcineurin-like phosphoesterase Patl_3443 PF13476 AAA domain Patl_3455 PF07690 Major Facilitator Superfamily Patl_3456 PF04851 Type III restriction enzyme, res subunit Patl_3456 PF00271 Helicase conserved C-terminal domain Patl_3458 PF13417 Glutathione S-transferase, N-terminal domain Patl_3458 PF04399 Glutaredoxin 2, C terminal domain Patl_3464 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Patl_3464 PF00672 HAMP domain Patl_3465 PF01037 Lrp/AsnC ligand binding domain Patl_3466 PF07715 TonB-dependent Receptor Plug Domain Patl_3466 PF00593 TonB dependent receptor Patl_3469 PF01479 S4 domain Patl_3469 PF00849 RNA pseudouridylate synthase Patl_3470 PF13181 Tetratricopeptide repeat Patl_3471 PF07715 TonB-dependent Receptor Plug Domain Patl_3471 PF00593 TonB dependent receptor Patl_3472 PF00970 Oxidoreductase FAD-binding domain Patl_3472 PF00042 Globin Patl_3472 PF00175 Oxidoreductase NAD-binding domain Patl_3475 PF00158 Sigma-54 interaction domain Patl_3475 PF01590 GAF domain Patl_3476 PF10996 Beta-Casp domain Patl_3476 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Patl_3476 PF00753 Metallo-beta-lactamase superfamily Patl_3477 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Patl_3477 PF08447 PAS fold Patl_3477 PF13426 PAS domain Patl_3478 PF02560 Cyanate lyase C-terminal domain Patl_3479 PF00069 Protein kinase domain Patl_3480 PF01226 Formate/nitrite transporter Patl_3481 PF00929 Exonuclease Patl_3482 PF03193 RsgA GTPase Patl_3483 PF02666 Phosphatidylserine decarboxylase Patl_3485 PF03009 Glycerophosphoryl diester phosphodiesterase family Patl_3488 PF00557 Metallopeptidase family M24 Patl_3488 PF01321 Creatinase/Prolidase N-terminal domain Patl_3490 PF01523 Putative modulator of DNA gyrase Patl_3490 PF01523 Putative modulator of DNA gyrase Patl_3491 PF01523 Putative modulator of DNA gyrase Patl_3493 PF07726 ATPase family associated with various cellular activities (AAA) Patl_3493 PF17863 AAA lid domain Patl_3498 PF01914 MarC family integral membrane protein Patl_3500 PF04073 Aminoacyl-tRNA editing domain Patl_3501 PF01494 FAD binding domain Patl_3502 PF00557 Metallopeptidase family M24 Patl_3502 PF05195 Aminopeptidase P, N-terminal domain Patl_3503 PF03695 Uncharacterised protein family (UPF0149) Patl_3505 PF00294 pfkB family carbohydrate kinase Patl_3506 PF01156 Inosine-uridine preferring nucleoside hydrolase Patl_3507 PF01812 5-formyltetrahydrofolate cyclo-ligase family Patl_3508 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Patl_3510 PF00293 NUDIX domain Patl_3511 PF07516 SecA Wing and Scaffold domain Patl_3511 PF01043 SecA preprotein cross-linking domain Patl_3511 PF02810 SEC-C motif Patl_3511 PF07517 SecA DEAD-like domain Patl_3512 PF08525 Opacity-associated protein A N-terminal motif Patl_3512 PF01551 Peptidase family M23 Patl_3512 PF01476 LysM domain Patl_3513 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Patl_3514 PF12327 FtsZ family, C-terminal domain Patl_3514 PF00091 Tubulin/FtsZ family, GTPase domain Patl_3515 PF02491 SHS2 domain inserted in FTSA Patl_3516 PF08478 POTRA domain, FtsQ-type Patl_3516 PF03799 Cell division protein FtsQ Patl_3517 PF01820 D-ala D-ala ligase N-terminus Patl_3517 PF07478 D-ala D-ala ligase C-terminus Patl_3518 PF01225 Mur ligase family, catalytic domain Patl_3518 PF02875 Mur ligase family, glutamate ligase domain Patl_3518 PF08245 Mur ligase middle domain Patl_3519 PF04101 Glycosyltransferase family 28 C-terminal domain Patl_3519 PF03033 Glycosyltransferase family 28 N-terminal domain Patl_3520 PF01098 Cell cycle protein Patl_3521 PF08245 Mur ligase middle domain Patl_3521 PF02875 Mur ligase family, glutamate ligase domain Patl_3522 PF00953 Glycosyl transferase family 4 Patl_3522 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Patl_3523 PF08245 Mur ligase middle domain Patl_3523 PF02875 Mur ligase family, glutamate ligase domain Patl_3523 PF01225 Mur ligase family, catalytic domain Patl_3524 PF02875 Mur ligase family, glutamate ligase domain Patl_3524 PF08245 Mur ligase middle domain Patl_3524 PF01225 Mur ligase family, catalytic domain Patl_3525 PF03717 Penicillin-binding Protein dimerisation domain Patl_3525 PF00905 Penicillin binding protein transpeptidase domain Patl_3526 PF04999 Cell division protein FtsL Patl_3527 PF01795 MraW methylase family Patl_3528 PF02381 MraZ protein, putative antitoxin-like Patl_3531 PF08450 SMP-30/Gluconolactonase/LRE-like region Patl_3532 PF00392 Bacterial regulatory proteins, gntR family Patl_3532 PF07729 FCD domain Patl_3533 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Patl_3533 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Patl_3534 PF01263 Aldose 1-epimerase Patl_3538 PF04542 Sigma-70 region 2 Patl_3538 PF04545 Sigma-70, region 4 Patl_3539 PF03544 Gram-negative bacterial TonB protein C-terminal Patl_3541 PF00072 Response regulator receiver domain Patl_3541 PF00158 Sigma-54 interaction domain Patl_3541 PF02954 Bacterial regulatory protein, Fis family Patl_3542 PF00563 EAL domain Patl_3542 PF00990 Diguanylate cyclase, GGDEF domain Patl_3542 PF03707 Bacterial signalling protein N terminal repeat Patl_3543 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Patl_3543 PF00072 Response regulator receiver domain Patl_3543 PF01627 Hpt domain Patl_3543 PF00512 His Kinase A (phospho-acceptor) domain Patl_3543 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3543 PF00672 HAMP domain Patl_3544 PF00082 Subtilase family Patl_3545 PF03707 Bacterial signalling protein N terminal repeat Patl_3545 PF00563 EAL domain Patl_3545 PF00990 Diguanylate cyclase, GGDEF domain Patl_3546 PF01590 GAF domain Patl_3546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3546 PF00512 His Kinase A (phospho-acceptor) domain Patl_3546 PF08446 PAS fold Patl_3546 PF00360 Phytochrome region Patl_3547 PF00072 Response regulator receiver domain Patl_3547 PF01339 CheB methylesterase Patl_3548 PF00512 His Kinase A (phospho-acceptor) domain Patl_3548 PF09308 LuxQ, periplasmic Patl_3548 PF00072 Response regulator receiver domain Patl_3548 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3560 PF03739 Lipopolysaccharide export system permease LptF/LptG Patl_3561 PF03739 Lipopolysaccharide export system permease LptF/LptG Patl_3562 PF02789 Cytosol aminopeptidase family, N-terminal domain Patl_3562 PF00883 Cytosol aminopeptidase family, catalytic domain Patl_3563 PF04364 DNA polymerase III chi subunit, HolC Patl_3564 PF00133 tRNA synthetases class I (I, L, M and V) Patl_3564 PF08264 Anticodon-binding domain of tRNA Patl_3564 PF10458 Valyl tRNA synthetase tRNA binding arm Patl_3565 PF00149 Calcineurin-like phosphoesterase Patl_3565 PF02872 5'-nucleotidase, C-terminal domain Patl_3566 PF01590 GAF domain Patl_3566 PF00990 Diguanylate cyclase, GGDEF domain Patl_3566 PF00360 Phytochrome region Patl_3566 PF00563 EAL domain Patl_3571 PF00486 Transcriptional regulatory protein, C terminal Patl_3571 PF00072 Response regulator receiver domain Patl_3572 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3572 PF00512 His Kinase A (phospho-acceptor) domain Patl_3573 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Patl_3573 PF12801 4Fe-4S binding domain Patl_3573 PF13746 4Fe-4S dicluster domain Patl_3574 PF01636 Phosphotransferase enzyme family Patl_3575 PF01323 DSBA-like thioredoxin domain Patl_3576 PF00990 Diguanylate cyclase, GGDEF domain Patl_3576 PF05230 MASE2 domain Patl_3577 PF03167 Uracil DNA glycosylase superfamily Patl_3578 PF00291 Pyridoxal-phosphate dependent enzyme Patl_3578 PF14821 Threonine synthase N terminus Patl_3579 PF08544 GHMP kinases C terminal Patl_3579 PF00288 GHMP kinases N terminal domain Patl_3580 PF00696 Amino acid kinase family Patl_3580 PF01842 ACT domain Patl_3580 PF00742 Homoserine dehydrogenase Patl_3580 PF03447 Homoserine dehydrogenase, NAD binding domain Patl_3580 PF13840 ACT domain Patl_3581 PF00483 Nucleotidyl transferase Patl_3582 PF00011 Hsp20/alpha crystallin family Patl_3583 PF01590 GAF domain Patl_3583 PF00360 Phytochrome region Patl_3583 PF08446 PAS fold Patl_3583 PF00512 His Kinase A (phospho-acceptor) domain Patl_3583 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3591 PF01597 Glycine cleavage H-protein Patl_3592 PF08669 Glycine cleavage T-protein C-terminal barrel domain Patl_3592 PF01571 Aminomethyltransferase folate-binding domain Patl_3593 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_3593 PF03466 LysR substrate binding domain Patl_3594 PF13401 AAA domain Patl_3594 PF01471 Putative peptidoglycan binding domain Patl_3595 PF03006 Haemolysin-III related Patl_3597 PF00873 AcrB/AcrD/AcrF family Patl_3599 PF02321 Outer membrane efflux protein Patl_3600 PF01541 GIY-YIG catalytic domain Patl_3601 PF03710 Glutamate-ammonia ligase adenylyltransferase Patl_3601 PF08335 GlnD PII-uridylyltransferase Patl_3603 PF03279 Bacterial lipid A biosynthesis acyltransferase Patl_3604 PF00512 His Kinase A (phospho-acceptor) domain Patl_3604 PF00072 Response regulator receiver domain Patl_3604 PF01627 Hpt domain Patl_3604 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3604 PF00672 HAMP domain Patl_3604 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Patl_3606 PF00144 Beta-lactamase Patl_3607 PF06150 ChaB Patl_3608 PF05661 Protein of unknown function (DUF808) Patl_3609 PF04748 Divergent polysaccharide deacetylase Patl_3610 PF01551 Peptidase family M23 Patl_3611 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Patl_3611 PF01676 Metalloenzyme superfamily Patl_3612 PF00581 Rhodanese-like domain Patl_3613 PF00462 Glutaredoxin Patl_3614 PF02556 Preprotein translocase subunit SecB Patl_3615 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Patl_3615 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Patl_3616 PF05360 yiaA/B two helix domain Patl_3620 PF03883 Peroxide stress protein YaaA Patl_3622 PF00923 Transaldolase/Fructose-6-phosphate aldolase Patl_3623 PF00342 Phosphoglucose isomerase Patl_3625 PF13533 Biotin-lipoyl like Patl_3626 PF01047 MarR family Patl_3627 PF00593 TonB dependent receptor Patl_3627 PF07715 TonB-dependent Receptor Plug Domain Patl_3628 PF00155 Aminotransferase class I and II Patl_3629 PF00486 Transcriptional regulatory protein, C terminal Patl_3629 PF00072 Response regulator receiver domain Patl_3630 PF03104 DNA polymerase family B, exonuclease domain Patl_3630 PF00136 DNA polymerase family B Patl_3631 PF00990 Diguanylate cyclase, GGDEF domain Patl_3631 PF00072 Response regulator receiver domain Patl_3633 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Patl_3634 PF01926 50S ribosome-binding GTPase Patl_3635 PF07715 TonB-dependent Receptor Plug Domain Patl_3635 PF00593 TonB dependent receptor Patl_3640 PF14592 Chondroitinase B Patl_3643 PF01566 Natural resistance-associated macrophage protein Patl_3644 PF01202 Shikimate kinase Patl_3648 PF03786 D-mannonate dehydratase (UxuA) Patl_3649 PF01232 Mannitol dehydrogenase Rossmann domain Patl_3649 PF08125 Mannitol dehydrogenase C-terminal domain Patl_3651 PF07940 Heparinase II/III-like protein Patl_3651 PF05426 Alginate lyase Patl_3652 PF16916 Dimerisation domain of Zinc Transporter Patl_3652 PF01545 Cation efflux family Patl_3654 PF02233 NAD(P) transhydrogenase beta subunit Patl_3655 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Patl_3656 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Patl_3656 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Patl_3657 PF00294 pfkB family carbohydrate kinase Patl_3658 PF07690 Major Facilitator Superfamily Patl_3659 PF14592 Chondroitinase B Patl_3660 PF07729 FCD domain Patl_3660 PF00392 Bacterial regulatory proteins, gntR family Patl_3662 PF01494 FAD binding domain Patl_3663 PF03781 Sulfatase-modifying factor enzyme 1 Patl_3663 PF12867 DinB superfamily Patl_3665 PF01544 CorA-like Mg2+ transporter protein Patl_3666 PF08443 RimK-like ATP-grasp domain Patl_3666 PF18030 RimK PreATP-grasp domain Patl_3667 PF18030 RimK PreATP-grasp domain Patl_3667 PF08443 RimK-like ATP-grasp domain Patl_3669 PF00990 Diguanylate cyclase, GGDEF domain Patl_3669 PF00563 EAL domain Patl_3669 PF00360 Phytochrome region Patl_3669 PF01590 GAF domain Patl_3670 PF00440 Bacterial regulatory proteins, tetR family Patl_3671 PF00924 Mechanosensitive ion channel Patl_3671 PF05552 Conserved TM helix Patl_3672 PF00465 Iron-containing alcohol dehydrogenase Patl_3673 PF12833 Helix-turn-helix domain Patl_3673 PF06719 AraC-type transcriptional regulator N-terminus Patl_3674 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Patl_3676 PF00535 Glycosyl transferase family 2 Patl_3677 PF00486 Transcriptional regulatory protein, C terminal Patl_3677 PF00072 Response regulator receiver domain Patl_3678 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Patl_3679 PF01799 [2Fe-2S] binding domain Patl_3679 PF00111 2Fe-2S iron-sulfur cluster binding domain Patl_3680 PF02798 Glutathione S-transferase, N-terminal domain Patl_3682 PF01266 FAD dependent oxidoreductase Patl_3682 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Patl_3683 PF00474 Sodium:solute symporter family Patl_3687 PF16874 Glycosyl hydrolase family 36 C-terminal domain Patl_3687 PF16875 Glycosyl hydrolase family 36 N-terminal domain Patl_3688 PF01244 Membrane dipeptidase (Peptidase family M19) Patl_3692 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Patl_3693 PF04348 LppC putative lipoprotein Patl_3694 PF02021 Uncharacterised protein family UPF0102 Patl_3695 PF13580 SIS domain Patl_3696 PF04972 BON domain Patl_3697 PF04386 Stringent starvation protein B Patl_3698 PF00043 Glutathione S-transferase, C-terminal domain Patl_3698 PF02798 Glutathione S-transferase, N-terminal domain Patl_3699 PF02167 Cytochrome C1 family Patl_3700 PF00033 Cytochrome b/b6/petB Patl_3700 PF00032 Cytochrome b(C-terminal)/b6/petD Patl_3701 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Patl_3701 PF00355 Rieske [2Fe-2S] domain Patl_3702 PF00380 Ribosomal protein S9/S16 Patl_3703 PF00572 Ribosomal protein L13 Patl_3706 PF03819 MazG nucleotide pyrophosphohydrolase domain Patl_3707 PF02824 TGS domain Patl_3707 PF04607 Region found in RelA / SpoT proteins Patl_3707 PF13291 ACT domain Patl_3708 PF01648 4'-phosphopantetheinyl transferase superfamily Patl_3709 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Patl_3710 PF11967 Recombination protein O N terminal Patl_3710 PF02565 Recombination protein O C terminal Patl_3712 PF17768 RecJ OB domain Patl_3712 PF02272 DHHA1 domain Patl_3712 PF01368 DHH family Patl_3713 PF10411 Disulfide bond isomerase protein N-terminus Patl_3713 PF13098 Thioredoxin-like domain Patl_3714 PF02899 Phage integrase, N-terminal SAM-like domain Patl_3714 PF00589 Phage integrase family Patl_3716 PF00437 Type II/IV secretion system protein Patl_3717 PF00437 Type II/IV secretion system protein Patl_3718 PF01168 Alanine racemase, N-terminal domain Patl_3719 PF14748 Pyrroline-5-carboxylate reductase dimerisation Patl_3719 PF03807 NADP oxidoreductase coenzyme F420-dependent Patl_3720 PF02325 YGGT family Patl_3723 PF00072 Response regulator receiver domain Patl_3723 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Patl_3723 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3723 PF00512 His Kinase A (phospho-acceptor) domain Patl_3723 PF00672 HAMP domain Patl_3723 PF01627 Hpt domain Patl_3724 PF12833 Helix-turn-helix domain Patl_3725 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Patl_3725 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Patl_3727 PF00083 Sugar (and other) transporter Patl_3728 PF04616 Glycosyl hydrolases family 43 Patl_3730 PF00933 Glycosyl hydrolase family 3 N terminal domain Patl_3730 PF01915 Glycosyl hydrolase family 3 C-terminal domain Patl_3730 PF14310 Fibronectin type III-like domain Patl_3732 PF13091 PLD-like domain Patl_3733 PF00313 'Cold-shock' DNA-binding domain Patl_3734 PF08534 Redoxin Patl_3735 PF00186 Dihydrofolate reductase Patl_3736 PF01018 GTP1/OBG Patl_3736 PF01926 50S ribosome-binding GTPase Patl_3737 PF01016 Ribosomal L27 protein Patl_3738 PF00829 Ribosomal prokaryotic L21 protein Patl_3739 PF00348 Polyprenyl synthetase Patl_3744 PF03948 Ribosomal protein L9, C-terminal domain Patl_3744 PF01281 Ribosomal protein L9, N-terminal domain Patl_3745 PF01084 Ribosomal protein S18 Patl_3746 PF01250 Ribosomal protein S6 Patl_3747 PF18415 Histidine kinase receptor ArcB trans-membrane domain Patl_3747 PF01627 Hpt domain Patl_3747 PF00072 Response regulator receiver domain Patl_3747 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3747 PF00512 His Kinase A (phospho-acceptor) domain Patl_3747 PF00989 PAS fold Patl_3748 PF04898 Glutamate synthase central domain Patl_3748 PF01493 GXGXG motif Patl_3748 PF00310 Glutamine amidotransferases class-II Patl_3748 PF01645 Conserved region in glutamate synthase Patl_3749 PF07992 Pyridine nucleotide-disulphide oxidoreductase Patl_3749 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Patl_3750 PF00465 Iron-containing alcohol dehydrogenase Patl_3752 PF00166 Chaperonin 10 Kd subunit Patl_3753 PF00118 TCP-1/cpn60 chaperonin family Patl_3759 PF08240 Alcohol dehydrogenase GroES-like domain Patl_3759 PF00107 Zinc-binding dehydrogenase Patl_3760 PF00171 Aldehyde dehydrogenase family Patl_3763 PF08240 Alcohol dehydrogenase GroES-like domain Patl_3763 PF00107 Zinc-binding dehydrogenase Patl_3764 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB Patl_3765 PF01381 Helix-turn-helix Patl_3769 PF18500 CadC C-terminal domain 1 Patl_3769 PF00486 Transcriptional regulatory protein, C terminal Patl_3771 PF00440 Bacterial regulatory proteins, tetR family Patl_3771 PF13977 BetI-type transcriptional repressor, C-terminal Patl_3773 PF00005 ABC transporter Patl_3776 PF07715 TonB-dependent Receptor Plug Domain Patl_3776 PF00593 TonB dependent receptor Patl_3777 PF01321 Creatinase/Prolidase N-terminal domain Patl_3777 PF00557 Metallopeptidase family M24 Patl_3778 PF12852 Cupin Patl_3778 PF12833 Helix-turn-helix domain Patl_3779 PF00109 Beta-ketoacyl synthase, N-terminal domain Patl_3779 PF02801 Beta-ketoacyl synthase, C-terminal domain Patl_3783 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_3783 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_3783 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_3784 PF00313 'Cold-shock' DNA-binding domain Patl_3785 PF00773 RNB domain Patl_3785 PF08206 Ribonuclease B OB domain Patl_3785 PF08461 Ribonuclease R winged-helix domain Patl_3785 PF17876 Cold shock domain Patl_3785 PF00575 S1 RNA binding domain Patl_3791 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Patl_3791 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Patl_3793 PF01966 HD domain Patl_3793 PF13286 Phosphohydrolase-associated domain Patl_3795 PF00593 TonB dependent receptor Patl_3795 PF07715 TonB-dependent Receptor Plug Domain Patl_3797 PF00563 EAL domain Patl_3797 PF00990 Diguanylate cyclase, GGDEF domain Patl_3797 PF03707 Bacterial signalling protein N terminal repeat Patl_3798 PF02321 Outer membrane efflux protein Patl_3799 PF00873 AcrB/AcrD/AcrF family Patl_3800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Patl_3800 PF00529 HlyD membrane-fusion protein of T1SS Patl_3803 PF00593 TonB dependent receptor Patl_3803 PF07715 TonB-dependent Receptor Plug Domain Patl_3809 PF01494 FAD binding domain Patl_3810 PF12146 Serine aminopeptidase, S33 Patl_3811 PF13193 AMP-binding enzyme C-terminal domain Patl_3811 PF00501 AMP-binding enzyme Patl_3812 PF00378 Enoyl-CoA hydratase/isomerase Patl_3814 PF01968 Hydantoinase/oxoprolinase Patl_3814 PF05378 Hydantoinase/oxoprolinase N-terminal region Patl_3815 PF01566 Natural resistance-associated macrophage protein Patl_3817 PF04820 Tryptophan halogenase Patl_3819 PF07690 Major Facilitator Superfamily Patl_3820 PF00128 Alpha amylase, catalytic domain Patl_3821 PF00356 Bacterial regulatory proteins, lacI family Patl_3822 PF00083 Sugar (and other) transporter Patl_3823 PF00251 Glycosyl hydrolases family 32 N-terminal domain Patl_3823 PF08244 Glycosyl hydrolases family 32 C terminal Patl_3824 PF14497 Glutathione S-transferase, C-terminal domain Patl_3824 PF13417 Glutathione S-transferase, N-terminal domain Patl_3829 PF02562 PhoH-like protein Patl_3829 PF13638 PIN domain Patl_3830 PF12137 RNA polymerase recycling family C-terminal Patl_3830 PF00176 SNF2 family N-terminal domain Patl_3830 PF18339 RapA N-terminal Tudor like domain 1 Patl_3830 PF18337 RapA N-terminal Tudor like domain Patl_3830 PF00271 Helicase conserved C-terminal domain Patl_3831 PF00849 RNA pseudouridylate synthase Patl_3834 PF07690 Major Facilitator Superfamily Patl_3835 PF00990 Diguanylate cyclase, GGDEF domain Patl_3835 PF05230 MASE2 domain Patl_3836 PF00072 Response regulator receiver domain Patl_3837 PF00303 Thymidylate synthase Patl_3839 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Patl_3841 PF00210 Ferritin-like domain Patl_3843 PF01790 Prolipoprotein diacylglyceryl transferase Patl_3844 PF01925 Sulfite exporter TauE/SafE Patl_3845 PF00391 PEP-utilising enzyme, mobile domain Patl_3845 PF02896 PEP-utilising enzyme, TIM barrel domain Patl_3845 PF05524 PEP-utilising enzyme, N-terminal Patl_3845 PF01590 GAF domain Patl_3846 PF00293 NUDIX domain Patl_3848 PF02976 DNA mismatch repair enzyme MutH Patl_3849 PF00171 Aldehyde dehydrogenase family Patl_3850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Patl_3850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Patl_3850 PF00205 Thiamine pyrophosphate enzyme, central domain Patl_3851 PF01928 CYTH domain Patl_3852 PF08239 Bacterial SH3 domain Patl_3856 PF04977 Septum formation initiator Patl_3857 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Patl_3858 PF02542 YgbB family Patl_3859 PF01142 tRNA pseudouridine synthase D (TruD) Patl_3860 PF01975 Survival protein SurE Patl_3863 PF01476 LysM domain Patl_3863 PF01551 Peptidase family M23 Patl_3864 PF04542 Sigma-70 region 2 Patl_3864 PF00140 Sigma-70 factor, region 1.2 Patl_3864 PF04545 Sigma-70, region 4 Patl_3864 PF04539 Sigma-70 region 3 Patl_3867 PF07517 SecA DEAD-like domain Patl_3867 PF02810 SEC-C motif Patl_3867 PF07516 SecA Wing and Scaffold domain Patl_3867 PF01043 SecA preprotein cross-linking domain Patl_3869 PF14437 MafB19-like deaminase Patl_3871 PF01381 Helix-turn-helix Patl_3872 PF00583 Acetyltransferase (GNAT) family Patl_3872 PF00795 Carbon-nitrogen hydrolase Patl_3873 PF17810 Arginine decarboxylase helical bundle domain Patl_3873 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Patl_3873 PF17944 Arginine decarboxylase C-terminal helical extension Patl_3874 PF00144 Beta-lactamase Patl_3876 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Patl_3876 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Patl_3877 PF00892 EamA-like transporter family Patl_3878 PF00990 Diguanylate cyclase, GGDEF domain Patl_3879 PF00132 Bacterial transferase hexapeptide (six repeats) Patl_3879 PF14602 Hexapeptide repeat of succinyl-transferase Patl_3879 PF12804 MobA-like NTP transferase domain Patl_3880 PF08220 DeoR-like helix-turn-helix domain Patl_3880 PF00455 DeoR C terminal sensor domain Patl_3881 PF01380 SIS domain Patl_3883 PF00248 Aldo/keto reductase family Patl_3884 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Patl_3885 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Patl_3886 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit Patl_3887 PF04909 Amidohydrolase Patl_3888 PF04909 Amidohydrolase Patl_3889 PF04303 PrpF protein Patl_3890 PF03737 Aldolase/RraA Patl_3891 PF03466 LysR substrate binding domain Patl_3891 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_3893 PF01494 FAD binding domain Patl_3895 PF00171 Aldehyde dehydrogenase family Patl_3897 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_3897 PF03466 LysR substrate binding domain Patl_3898 PF06505 Activator of aromatic catabolism Patl_3898 PF02954 Bacterial regulatory protein, Fis family Patl_3898 PF02830 V4R domain Patl_3898 PF00158 Sigma-54 interaction domain Patl_3899 PF08240 Alcohol dehydrogenase GroES-like domain Patl_3899 PF00107 Zinc-binding dehydrogenase Patl_3901 PF00593 TonB dependent receptor Patl_3901 PF07715 TonB-dependent Receptor Plug Domain Patl_3902 PF12706 Beta-lactamase superfamily domain Patl_3904 PF00593 TonB dependent receptor Patl_3904 PF07715 TonB-dependent Receptor Plug Domain Patl_3905 PF00440 Bacterial regulatory proteins, tetR family Patl_3906 PF00753 Metallo-beta-lactamase superfamily Patl_3908 PF00034 Cytochrome c Patl_3912 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_3912 PF18158 Adaptive response protein AidB N-terminal domain Patl_3912 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_3914 PF00990 Diguanylate cyclase, GGDEF domain Patl_3914 PF00563 EAL domain Patl_3914 PF08448 PAS fold Patl_3915 PF00672 HAMP domain Patl_3915 PF00072 Response regulator receiver domain Patl_3915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3915 PF01627 Hpt domain Patl_3915 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Patl_3915 PF00512 His Kinase A (phospho-acceptor) domain Patl_3916 PF03466 LysR substrate binding domain Patl_3916 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_3917 PF00753 Metallo-beta-lactamase superfamily Patl_3918 PF01931 Protein of unknown function DUF84 Patl_3919 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_3919 PF00512 His Kinase A (phospho-acceptor) domain Patl_3919 PF00672 HAMP domain Patl_3920 PF00072 Response regulator receiver domain Patl_3920 PF00486 Transcriptional regulatory protein, C terminal Patl_3922 PF00092 von Willebrand factor type A domain Patl_3922 PF12034 Domain of unknown function (DUF3520) Patl_3922 PF12450 von Willebrand factor Patl_3926 PF02627 Carboxymuconolactone decarboxylase family Patl_3927 PF00005 ABC transporter Patl_3928 PF01061 ABC-2 type transporter Patl_3929 PF02390 Putative methyltransferase Patl_3930 PF03707 Bacterial signalling protein N terminal repeat Patl_3930 PF00563 EAL domain Patl_3930 PF00990 Diguanylate cyclase, GGDEF domain Patl_3931 PF00282 Pyridoxal-dependent decarboxylase conserved domain Patl_3932 PF02569 Pantoate-beta-alanine ligase Patl_3933 PF02548 Ketopantoate hydroxymethyltransferase Patl_3934 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Patl_3935 PF01743 Poly A polymerase head domain Patl_3935 PF12627 Probable RNA and SrmB- binding site of polymerase A Patl_3935 PF12626 Polymerase A arginine-rich C-terminus Patl_3936 PF00749 tRNA synthetases class I (E and Q), catalytic domain Patl_3937 PF01258 Prokaryotic dksA/traR C4-type zinc finger Patl_3938 PF17746 SfsA N-terminal OB domain Patl_3938 PF03749 Sugar fermentation stimulation protein RE domain Patl_3939 PF00883 Cytosol aminopeptidase family, catalytic domain Patl_3939 PF12404 Peptidase Patl_3941 PF01914 MarC family integral membrane protein Patl_3944 PF00448 SRP54-type protein, GTPase domain Patl_3944 PF02881 SRP54-type protein, helical bundle domain Patl_3945 PF00005 ABC transporter Patl_3946 PF18075 FtsX extracellular domain Patl_3947 PF08668 HDOD domain Patl_3947 PF00563 EAL domain Patl_3948 PF00140 Sigma-70 factor, region 1.2 Patl_3948 PF04542 Sigma-70 region 2 Patl_3948 PF04545 Sigma-70, region 4 Patl_3949 PF09500 Putative thioesterase (yiiD_Cterm) Patl_3949 PF00583 Acetyltransferase (GNAT) family Patl_3950 PF02580 D-Tyr-tRNA(Tyr) deacylase Patl_3951 PF00561 alpha/beta hydrolase fold Patl_3954 PF03631 Virulence factor BrkB Patl_3955 PF02219 Methylenetetrahydrofolate reductase Patl_3956 PF01340 Met Apo-repressor, MetJ Patl_3957 PF02798 Glutathione S-transferase, N-terminal domain Patl_3958 PF00034 Cytochrome c Patl_3959 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Patl_3960 PF00563 EAL domain Patl_3960 PF00990 Diguanylate cyclase, GGDEF domain Patl_3960 PF08448 PAS fold Patl_3961 PF00925 GTP cyclohydrolase II Patl_3961 PF08719 Domain of unknown function (DUF1768) Patl_3962 PF11737 Protein of unknown function (DUF3300) Patl_3964 PF04371 Porphyromonas-type peptidyl-arginine deiminase Patl_3965 PF00795 Carbon-nitrogen hydrolase Patl_3966 PF00291 Pyridoxal-phosphate dependent enzyme Patl_3967 PF08000 Bacterial PH domain Patl_3968 PF00326 Prolyl oligopeptidase family Patl_3968 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region Patl_3970 PF05175 Methyltransferase small domain Patl_3972 PF08331 Domain of unknown function (DUF1730) Patl_3973 PF03853 YjeF-related protein N-terminus Patl_3973 PF01256 Carbohydrate kinase Patl_3974 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Patl_3975 PF01520 N-acetylmuramoyl-L-alanine amidase Patl_3976 PF01119 DNA mismatch repair protein, C-terminal domain Patl_3976 PF08676 MutL C terminal dimerisation domain Patl_3978 PF17209 Hfq protein Patl_3979 PF01926 50S ribosome-binding GTPase Patl_3979 PF13167 GTP-binding GTPase N-terminal Patl_3979 PF16360 GTP-binding GTPase Middle Region Patl_3980 PF12221 Bacterial membrane protein N terminal Patl_3980 PF01145 SPFH domain / Band 7 family Patl_3981 PF01145 SPFH domain / Band 7 family Patl_3983 PF00043 Glutathione S-transferase, C-terminal domain Patl_3983 PF02798 Glutathione S-transferase, N-terminal domain Patl_3985 PF01547 Bacterial extracellular solute-binding protein Patl_3987 PF00762 Ferrochelatase Patl_3988 PF03806 AbgT putative transporter family Patl_3990 PF01389 OmpA-like transmembrane domain Patl_3990 PF00691 OmpA family Patl_3992 PF03707 Bacterial signalling protein N terminal repeat Patl_3992 PF00563 EAL domain Patl_3992 PF00990 Diguanylate cyclase, GGDEF domain Patl_3993 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Patl_3993 PF02770 Acyl-CoA dehydrogenase, middle domain Patl_3993 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Patl_3994 PF00248 Aldo/keto reductase family Patl_3996 PF03144 Elongation factor Tu domain 2 Patl_3996 PF03143 Elongation factor Tu C-terminal domain Patl_3996 PF00009 Elongation factor Tu GTP binding domain Patl_3997 PF03309 Type III pantothenate kinase Patl_3998 PF08279 HTH domain Patl_3998 PF03099 Biotin/lipoate A/B protein ligase family Patl_3998 PF02237 Biotin protein ligase C terminal domain Patl_3999 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Patl_3999 PF01565 FAD binding domain Patl_4000 PF13614 AAA domain Patl_4002 PF02719 Polysaccharide biosynthesis protein Patl_4003 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Patl_4005 PF02397 Bacterial sugar transferase Patl_4006 PF13439 Glycosyltransferase Family 4 Patl_4006 PF00534 Glycosyl transferases group 1 Patl_4007 PF00534 Glycosyl transferases group 1 Patl_4007 PF13439 Glycosyltransferase Family 4 Patl_4013 PF00484 Carbonic anhydrase Patl_4014 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_4014 PF03466 LysR substrate binding domain Patl_4016 PF00155 Aminotransferase class I and II Patl_4019 PF17820 PDZ domain Patl_4019 PF13180 PDZ domain Patl_4021 PF01053 Cys/Met metabolism PLP-dependent enzyme Patl_4022 PF02566 OsmC-like protein Patl_4024 PF01063 Amino-transferase class IV Patl_4025 PF00842 Alanine racemase, C-terminal domain Patl_4025 PF01168 Alanine racemase, N-terminal domain Patl_4026 PF08003 Protein of unknown function (DUF1698) Patl_4027 PF13649 Methyltransferase domain Patl_4028 PF00072 Response regulator receiver domain Patl_4028 PF00196 Bacterial regulatory proteins, luxR family Patl_4030 PF05958 tRNA (Uracil-5-)-methyltransferase Patl_4031 PF00440 Bacterial regulatory proteins, tetR family Patl_4034 PF03167 Uracil DNA glycosylase superfamily Patl_4035 PF03707 Bacterial signalling protein N terminal repeat Patl_4035 PF00563 EAL domain Patl_4035 PF00990 Diguanylate cyclase, GGDEF domain Patl_4037 PF01507 Phosphoadenosine phosphosulfate reductase family Patl_4038 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Patl_4038 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Patl_4039 PF00258 Flavodoxin Patl_4039 PF00667 FAD binding domain Patl_4039 PF00175 Oxidoreductase NAD-binding domain Patl_4044 PF04012 PspA/IM30 family Patl_4047 PF13193 AMP-binding enzyme C-terminal domain Patl_4047 PF00501 AMP-binding enzyme Patl_4051 PF01207 Dihydrouridine synthase (Dus) Patl_4055 PF01553 Acyltransferase Patl_4056 PF01553 Acyltransferase Patl_4057 PF00924 Mechanosensitive ion channel Patl_4059 PF01370 NAD dependent epimerase/dehydratase family Patl_4060 PF00209 Sodium:neurotransmitter symporter family Patl_4063 PF01625 Peptide methionine sulfoxide reductase Patl_4065 PF02929 Beta galactosidase small chain Patl_4065 PF16353 Domain of unknown function(DUF4981) Patl_4065 PF00703 Glycosyl hydrolases family 2 Patl_4065 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Patl_4065 PF02837 Glycosyl hydrolases family 2, sugar binding domain Patl_4067 PF00258 Flavodoxin Patl_4069 PF02472 Biopolymer transport protein ExbD/TolR Patl_4070 PF03737 Aldolase/RraA Patl_4071 PF01569 PAP2 superfamily Patl_4073 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Patl_4073 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Patl_4074 PF01678 Diaminopimelate epimerase Patl_4076 PF00589 Phage integrase family Patl_4076 PF02899 Phage integrase, N-terminal SAM-like domain Patl_4077 PF13419 Haloacid dehalogenase-like hydrolase Patl_4078 PF06426 Serine acetyltransferase, N-terminal Patl_4078 PF00132 Bacterial transferase hexapeptide (six repeats) Patl_4079 PF13361 UvrD-like helicase C-terminal domain Patl_4079 PF00580 UvrD/REP helicase N-terminal domain Patl_4080 PF00990 Diguanylate cyclase, GGDEF domain Patl_4080 PF00072 Response regulator receiver domain Patl_4081 PF00892 EamA-like transporter family Patl_4088 PF02142 MGS-like domain Patl_4088 PF00781 Diacylglycerol kinase catalytic domain Patl_4090 PF00924 Mechanosensitive ion channel Patl_4094 PF00990 Diguanylate cyclase, GGDEF domain Patl_4094 PF17158 Membrane-associated sensor, integral membrane domain Patl_4096 PF00145 C-5 cytosine-specific DNA methylase Patl_4102 PF12705 PD-(D/E)XK nuclease superfamily Patl_4102 PF13361 UvrD-like helicase C-terminal domain Patl_4102 PF00580 UvrD/REP helicase N-terminal domain Patl_4114 PF00990 Diguanylate cyclase, GGDEF domain Patl_4114 PF00563 EAL domain Patl_4114 PF08448 PAS fold Patl_4117 PF00528 Binding-protein-dependent transport system inner membrane component Patl_4118 PF00528 Binding-protein-dependent transport system inner membrane component Patl_4119 PF00005 ABC transporter Patl_4119 PF08402 TOBE domain Patl_4122 PF00294 pfkB family carbohydrate kinase Patl_4123 PF00440 Bacterial regulatory proteins, tetR family Patl_4124 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Patl_4125 PF00873 AcrB/AcrD/AcrF family Patl_4126 PF02321 Outer membrane efflux protein Patl_4128 PF02798 Glutathione S-transferase, N-terminal domain Patl_4134 PF00248 Aldo/keto reductase family Patl_4135 PF10011 Predicted membrane protein (DUF2254) Patl_4140 PF01679 Proteolipid membrane potential modulator Patl_4141 PF03631 Virulence factor BrkB Patl_4144 PF06965 Na+/H+ antiporter 1 Patl_4145 PF00171 Aldehyde dehydrogenase family Patl_4147 PF00474 Sodium:solute symporter family Patl_4150 PF04333 MlaA lipoprotein Patl_4152 PF09308 LuxQ, periplasmic Patl_4152 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_4152 PF00072 Response regulator receiver domain Patl_4152 PF00512 His Kinase A (phospho-acceptor) domain Patl_4153 PF00072 Response regulator receiver domain Patl_4154 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_4154 PF01590 GAF domain Patl_4154 PF08446 PAS fold Patl_4154 PF00360 Phytochrome region Patl_4154 PF00512 His Kinase A (phospho-acceptor) domain Patl_4156 PF00072 Response regulator receiver domain Patl_4156 PF00158 Sigma-54 interaction domain Patl_4156 PF02954 Bacterial regulatory protein, Fis family Patl_4157 PF00583 Acetyltransferase (GNAT) family Patl_4159 PF00144 Beta-lactamase Patl_4160 PF00144 Beta-lactamase Patl_4162 PF00933 Glycosyl hydrolase family 3 N terminal domain Patl_4163 PF00293 NUDIX domain Patl_4164 PF01418 Helix-turn-helix domain, rpiR family Patl_4164 PF01380 SIS domain Patl_4165 PF00593 TonB dependent receptor Patl_4165 PF07715 TonB-dependent Receptor Plug Domain Patl_4167 PF07075 Protein of unknown function (DUF1343) Patl_4168 PF01380 SIS domain Patl_4170 PF00474 Sodium:solute symporter family Patl_4173 PF01380 SIS domain Patl_4174 PF01979 Amidohydrolase family Patl_4175 PF07690 Major Facilitator Superfamily Patl_4176 PF02016 LD-carboxypeptidase N-terminal domain Patl_4176 PF17676 LD-carboxypeptidase C-terminal domain Patl_4177 PF00563 EAL domain Patl_4177 PF00360 Phytochrome region Patl_4177 PF01590 GAF domain Patl_4177 PF00990 Diguanylate cyclase, GGDEF domain Patl_4178 PF02661 Fic/DOC family Patl_4178 PF12728 Helix-turn-helix domain Patl_4180 PF12848 ABC transporter Patl_4180 PF00005 ABC transporter Patl_4181 PF00672 HAMP domain Patl_4181 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Patl_4181 PF17200 Single Cache domain 2 Patl_4183 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Patl_4187 PF03949 Malic enzyme, NAD binding domain Patl_4187 PF00390 Malic enzyme, N-terminal domain Patl_4188 PF01197 Ribosomal protein L31 Patl_4189 PF17764 3′ DNA-binding domain (3′BD) Patl_4189 PF00271 Helicase conserved C-terminal domain Patl_4189 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Patl_4189 PF00270 DEAD/DEAH box helicase Patl_4189 PF18074 Primosomal protein N C-terminal domain Patl_4190 PF05036 Sporulation related domain Patl_4191 PF00227 Proteasome subunit Patl_4192 PF00004 ATPase family associated with various cellular activities (AAA) Patl_4192 PF07724 AAA domain (Cdc48 subfamily) Patl_4197 PF06965 Na+/H+ antiporter 1 Patl_4201 PF12437 Glutamine synthetase type III N terminal Patl_4201 PF18318 Glutamine synthetase C-terminal domain Patl_4201 PF00120 Glutamine synthetase, catalytic domain Patl_4203 PF07549 SecD/SecF GG Motif Patl_4203 PF13721 SecD export protein N-terminal TM region Patl_4203 PF02355 Protein export membrane protein Patl_4204 PF07549 SecD/SecF GG Motif Patl_4204 PF02355 Protein export membrane protein Patl_4206 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Patl_4206 PF07992 Pyridine nucleotide-disulphide oxidoreductase Patl_4207 PF01432 Peptidase family M3 Patl_4209 PF01209 ubiE/COQ5 methyltransferase family Patl_4211 PF03109 ABC1 family Patl_4214 PF02416 mttA/Hcf106 family Patl_4215 PF00902 Sec-independent protein translocase protein (TatC) Patl_4217 PF01026 TatD related DNase Patl_4218 PF00990 Diguanylate cyclase, GGDEF domain Patl_4218 PF00072 Response regulator receiver domain Patl_4219 PF00490 Delta-aminolevulinic acid dehydratase Patl_4220 PF02541 Ppx/GppA phosphatase family Patl_4221 PF00271 Helicase conserved C-terminal domain Patl_4221 PF00270 DEAD/DEAH box helicase Patl_4222 PF00085 Thioredoxin Patl_4223 PF07497 Rho termination factor, RNA-binding domain Patl_4223 PF07498 Rho termination factor, N-terminal domain Patl_4223 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Patl_4224 PF00731 AIR carboxylase Patl_4225 PF02222 ATP-grasp domain Patl_4225 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Patl_4226 PF17674 HHH domain Patl_4226 PF16921 Tex protein YqgF-like domain Patl_4226 PF00575 S1 RNA binding domain Patl_4226 PF09371 Tex-like protein N-terminal domain Patl_4230 PF12697 Alpha/beta hydrolase family Patl_4231 PF00156 Phosphoribosyl transferase domain Patl_4233 PF01521 Iron-sulphur cluster biosynthesis Patl_4233 PF01106 NifU-like domain Patl_4234 PF01554 MatE Patl_4235 PF14883 Hypothetical glycosyl hydrolase family 13 Patl_4235 PF01522 Polysaccharide deacetylase Patl_4237 PF02630 SCO1/SenC Patl_4238 PF01040 UbiA prenyltransferase family Patl_4239 PF02628 Cytochrome oxidase assembly protein Patl_4243 PF00510 Cytochrome c oxidase subunit III Patl_4244 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Patl_4245 PF00115 Cytochrome C and Quinol oxidase polypeptide I Patl_4246 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Patl_4246 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Patl_4247 PF01726 LexA DNA binding domain Patl_4247 PF00717 Peptidase S24-like Patl_4248 PF01553 Acyltransferase Patl_4249 PF00585 C-terminal regulatory domain of Threonine dehydratase Patl_4249 PF00291 Pyridoxal-phosphate dependent enzyme Patl_4250 PF00920 Dehydratase family Patl_4251 PF03458 UPF0126 domain Patl_4252 PF13335 Magnesium chelatase, subunit ChlI C-terminal Patl_4252 PF01078 Magnesium chelatase, subunit ChlI Patl_4254 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Patl_4254 PF03466 LysR substrate binding domain Patl_4255 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Patl_4255 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Patl_4257 PF05736 OprF membrane domain Patl_4257 PF00691 OmpA family Patl_4258 PF07690 Major Facilitator Superfamily Patl_4260 PF00484 Carbonic anhydrase Patl_4262 PF07687 Peptidase dimerisation domain Patl_4262 PF01546 Peptidase family M20/M25/M40 Patl_4266 PF07992 Pyridine nucleotide-disulphide oxidoreductase Patl_4268 PF00171 Aldehyde dehydrogenase family Patl_4269 PF00696 Amino acid kinase family Patl_4269 PF01472 PUA domain Patl_4272 PF01594 AI-2E family transporter Patl_4274 PF04116 Fatty acid hydroxylase superfamily Patl_4277 PF01979 Amidohydrolase family Patl_4280 PF01206 Sulfurtransferase TusA Patl_4281 PF00156 Phosphoribosyl transferase domain Patl_4282 PF03725 3' exoribonuclease family, domain 2 Patl_4282 PF01138 3' exoribonuclease family, domain 1 Patl_4283 PF03755 YicC-like family, N-terminal region Patl_4283 PF08340 Domain of unknown function (DUF1732) Patl_4285 PF01966 HD domain Patl_4289 PF04820 Tryptophan halogenase Patl_4293 PF18415 Histidine kinase receptor ArcB trans-membrane domain Patl_4293 PF01627 Hpt domain Patl_4293 PF00989 PAS fold Patl_4293 PF00072 Response regulator receiver domain Patl_4293 PF00512 His Kinase A (phospho-acceptor) domain Patl_4293 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Patl_4294 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Patl_4294 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Patl_4295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Patl_4295 PF02874 ATP synthase alpha/beta family, beta-barrel domain Patl_4296 PF00231 ATP synthase Patl_4297 PF02874 ATP synthase alpha/beta family, beta-barrel domain Patl_4297 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Patl_4297 PF00306 ATP synthase alpha/beta chain, C terminal domain Patl_4298 PF00213 ATP synthase delta (OSCP) subunit Patl_4299 PF00430 ATP synthase B/B' CF(0) Patl_4300 PF00137 ATP synthase subunit C Patl_4301 PF00119 ATP synthase A chain Patl_4302 PF03899 ATP synthase I chain Patl_4303 PF02195 ParB-like nuclease domain Patl_4303 PF17762 HTH domain found in ParB protein Patl_4304 PF13614 AAA domain Patl_4305 PF02527 rRNA small subunit methyltransferase G Patl_4306 PF13932 GidA associated domain Patl_4306 PF01134 Glucose inhibited division protein A Patl_4309 PF00258 Flavodoxin Patl_4310 PF10396 GTP-binding protein TrmE N-terminus Patl_4310 PF12631 MnmE helical domain Patl_4310 PF01926 50S ribosome-binding GTPase Patl_4311 PF04461 Protein of unknown function (DUF520) Patl_4312 PF02096 60Kd inner membrane protein Patl_4312 PF14849 YidC periplasmic domain Patl_4313 PF01809 Putative membrane protein insertion efficiency factor Patl_4314 PF00825 Ribonuclease P Patl_4315 PF00468 Ribosomal protein L34