locus-tag class description Daes_0001 PF13614 AAA domain Daes_0003 PF02195 ParB-like nuclease domain Daes_0003 PF17762 HTH domain found in ParB protein Daes_0004 PF00294 pfkB family carbohydrate kinase Daes_0004 PF01467 Cytidylyltransferase-like Daes_0005 PF00365 Phosphofructokinase Daes_0007 PF12728 Helix-turn-helix domain Daes_0008 PF08241 Methyltransferase domain Daes_0012 PF00731 AIR carboxylase Daes_0013 PF01969 Protein of unknown function DUF111 Daes_0015 PF00005 ABC transporter Daes_0015 PF02687 FtsX-like permease family Daes_0015 PF12704 MacB-like periplasmic core domain Daes_0019 PF00873 AcrB/AcrD/AcrF family Daes_0023 PF11849 Domain of unknown function (DUF3369) Daes_0026 PF00072 Response regulator receiver domain Daes_0026 PF00990 Diguanylate cyclase, GGDEF domain Daes_0027 PF01966 HD domain Daes_0027 PF11871 Domain of unknown function (DUF3391) Daes_0028 PF00535 Glycosyl transferase family 2 Daes_0029 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0029 PF00512 His Kinase A (phospho-acceptor) domain Daes_0029 PF01627 Hpt domain Daes_0029 PF00672 HAMP domain Daes_0029 PF00072 Response regulator receiver domain Daes_0029 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Daes_0031 PF00512 His Kinase A (phospho-acceptor) domain Daes_0031 PF00989 PAS fold Daes_0031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0032 PF00465 Iron-containing alcohol dehydrogenase Daes_0033 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0033 PF00072 Response regulator receiver domain Daes_0033 PF00989 PAS fold Daes_0033 PF01627 Hpt domain Daes_0033 PF18415 Histidine kinase receptor ArcB trans-membrane domain Daes_0033 PF00512 His Kinase A (phospho-acceptor) domain Daes_0034 PF03063 Prismane/CO dehydrogenase family Daes_0036 PF01966 HD domain Daes_0036 PF00672 HAMP domain Daes_0038 PF00563 EAL domain Daes_0038 PF08668 HDOD domain Daes_0039 PF01177 Asp/Glu/Hydantoin racemase Daes_0042 PF10369 Small subunit of acetolactate synthase Daes_0043 PF01515 Phosphate acetyl/butaryl transferase Daes_0044 PF00871 Acetokinase family Daes_0045 PF01739 CheR methyltransferase, SAM binding domain Daes_0045 PF03705 CheR methyltransferase, all-alpha domain Daes_0050 PF04536 TPM domain Daes_0051 PF04011 LemA family Daes_0054 PF01810 LysE type translocator Daes_0055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Daes_0055 PF03466 LysR substrate binding domain Daes_0056 PF00155 Aminotransferase class I and II Daes_0056 PF00392 Bacterial regulatory proteins, gntR family Daes_0058 PF00206 Lyase Daes_0058 PF10415 Fumarase C C-terminus Daes_0062 PF00072 Response regulator receiver domain Daes_0064 PF00072 Response regulator receiver domain Daes_0064 PF00486 Transcriptional regulatory protein, C terminal Daes_0065 PF13188 PAS domain Daes_0065 PF00989 PAS fold Daes_0065 PF00512 His Kinase A (phospho-acceptor) domain Daes_0065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0065 PF13426 PAS domain Daes_0066 PF00486 Transcriptional regulatory protein, C terminal Daes_0066 PF00072 Response regulator receiver domain Daes_0067 PF00916 Sulfate permease family Daes_0067 PF01740 STAS domain Daes_0068 PF08360 QacR-like protein, C-terminal region Daes_0068 PF00440 Bacterial regulatory proteins, tetR family Daes_0071 PF00875 DNA photolyase Daes_0071 PF03441 FAD binding domain of DNA photolyase Daes_0073 PF01370 NAD dependent epimerase/dehydratase family Daes_0074 PF00483 Nucleotidyl transferase Daes_0075 PF08544 GHMP kinases C terminal Daes_0075 PF00288 GHMP kinases N terminal domain Daes_0076 PF00456 Transketolase, thiamine diphosphate binding domain Daes_0077 PF02780 Transketolase, C-terminal domain Daes_0077 PF02779 Transketolase, pyrimidine binding domain Daes_0078 PF01370 NAD dependent epimerase/dehydratase family Daes_0079 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Daes_0080 PF00919 Uncharacterized protein family UPF0004 Daes_0080 PF18693 TRAM domain Daes_0080 PF04055 Radical SAM superfamily Daes_0082 PF09335 SNARE associated Golgi protein Daes_0085 PF01814 Hemerythrin HHE cation binding domain Daes_0088 PF08241 Methyltransferase domain Daes_0089 PF00535 Glycosyl transferase family 2 Daes_0090 PF00535 Glycosyl transferase family 2 Daes_0098 PF02348 Cytidylyltransferase Daes_0100 PF00535 Glycosyl transferase family 2 Daes_0101 PF03328 HpcH/HpaI aldolase/citrate lyase family Daes_0102 PF01842 ACT domain Daes_0102 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Daes_0102 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Daes_0103 PF16363 GDP-mannose 4,6 dehydratase Daes_0105 PF02348 Cytidylyltransferase Daes_0106 PF00535 Glycosyl transferase family 2 Daes_0107 PF16363 GDP-mannose 4,6 dehydratase Daes_0110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0110 PF00072 Response regulator receiver domain Daes_0110 PF00672 HAMP domain Daes_0110 PF00512 His Kinase A (phospho-acceptor) domain Daes_0110 PF01627 Hpt domain Daes_0110 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Daes_0111 PF12762 ISXO2-like transposase domain Daes_0113 PF16591 Helical bimodular sensor domain Daes_0113 PF00672 HAMP domain Daes_0113 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_0114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0114 PF00512 His Kinase A (phospho-acceptor) domain Daes_0114 PF09308 LuxQ, periplasmic Daes_0114 PF00072 Response regulator receiver domain Daes_0115 PF00072 Response regulator receiver domain Daes_0115 PF13188 PAS domain Daes_0115 PF00512 His Kinase A (phospho-acceptor) domain Daes_0115 PF08448 PAS fold Daes_0115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0116 PF00072 Response regulator receiver domain Daes_0116 PF00158 Sigma-54 interaction domain Daes_0116 PF02954 Bacterial regulatory protein, Fis family Daes_0117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0117 PF00512 His Kinase A (phospho-acceptor) domain Daes_0118 PF00072 Response regulator receiver domain Daes_0118 PF00486 Transcriptional regulatory protein, C terminal Daes_0119 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Daes_0119 PF00391 PEP-utilising enzyme, mobile domain Daes_0120 PF00158 Sigma-54 interaction domain Daes_0120 PF00072 Response regulator receiver domain Daes_0120 PF02954 Bacterial regulatory protein, Fis family Daes_0121 PF00582 Universal stress protein family Daes_0123 PF01925 Sulfite exporter TauE/SafE Daes_0127 PF00072 Response regulator receiver domain Daes_0127 PF00486 Transcriptional regulatory protein, C terminal Daes_0128 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Daes_0128 PF00391 PEP-utilising enzyme, mobile domain Daes_0129 PF12762 ISXO2-like transposase domain Daes_0130 PF06827 Zinc finger found in FPG and IleRS Daes_0130 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Daes_0130 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Daes_0131 PF03023 Lipid II flippase MurJ Daes_0132 PF05175 Methyltransferase small domain Daes_0140 PF18075 FtsX extracellular domain Daes_0141 PF00005 ABC transporter Daes_0142 PF17674 HHH domain Daes_0142 PF00575 S1 RNA binding domain Daes_0142 PF09371 Tex-like protein N-terminal domain Daes_0142 PF16921 Tex protein YqgF-like domain Daes_0145 PF00512 His Kinase A (phospho-acceptor) domain Daes_0145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0145 PF00672 HAMP domain Daes_0145 PF00989 PAS fold Daes_0146 PF08338 Domain of unknown function (DUF1731) Daes_0146 PF01370 NAD dependent epimerase/dehydratase family Daes_0147 PF02954 Bacterial regulatory protein, Fis family Daes_0147 PF00158 Sigma-54 interaction domain Daes_0147 PF00072 Response regulator receiver domain Daes_0149 PF02146 Sir2 family Daes_0150 PF00085 Thioredoxin Daes_0154 PF00571 CBS domain Daes_0156 PF00072 Response regulator receiver domain Daes_0156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0156 PF00512 His Kinase A (phospho-acceptor) domain Daes_0156 PF08448 PAS fold Daes_0156 PF13188 PAS domain Daes_0157 PF00158 Sigma-54 interaction domain Daes_0157 PF00072 Response regulator receiver domain Daes_0157 PF02954 Bacterial regulatory protein, Fis family Daes_0158 PF00578 AhpC/TSA family Daes_0160 PF13247 4Fe-4S dicluster domain Daes_0165 PF03454 MoeA C-terminal region (domain IV) Daes_0165 PF03453 MoeA N-terminal region (domain I and II) Daes_0165 PF00994 Probable molybdopterin binding domain Daes_0166 PF02634 FdhD/NarQ family Daes_0167 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Daes_0168 PF12804 MobA-like NTP transferase domain Daes_0169 PF12146 Serine aminopeptidase, S33 Daes_0173 PF00873 AcrB/AcrD/AcrF family Daes_0175 PF01018 GTP1/OBG Daes_0175 PF01926 50S ribosome-binding GTPase Daes_0175 PF04055 Radical SAM superfamily Daes_0176 PF12111 Polyribonucleotide phosphorylase C terminal Daes_0176 PF00575 S1 RNA binding domain Daes_0176 PF10150 Ribonuclease E/G family Daes_0177 PF02677 Epoxyqueuosine reductase QueH Daes_0179 PF04055 Radical SAM superfamily Daes_0181 PF00075 RNase H Daes_0185 PF00005 ABC transporter Daes_0185 PF02687 FtsX-like permease family Daes_0185 PF12704 MacB-like periplasmic core domain Daes_0186 PF00005 ABC transporter Daes_0186 PF02687 FtsX-like permease family Daes_0186 PF12704 MacB-like periplasmic core domain Daes_0187 PF13533 Biotin-lipoyl like Daes_0189 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Daes_0189 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Daes_0189 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Daes_0189 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Daes_0190 PF01145 SPFH domain / Band 7 family Daes_0190 PF12221 Bacterial membrane protein N terminal Daes_0191 PF01145 SPFH domain / Band 7 family Daes_0193 PF02548 Ketopantoate hydroxymethyltransferase Daes_0199 PF00534 Glycosyl transferases group 1 Daes_0199 PF13439 Glycosyltransferase Family 4 Daes_0200 PF13607 Succinyl-CoA ligase like flavodoxin domain Daes_0200 PF13380 CoA binding domain Daes_0200 PF00583 Acetyltransferase (GNAT) family Daes_0202 PF00501 AMP-binding enzyme Daes_0202 PF13193 AMP-binding enzyme C-terminal domain Daes_0202 PF16177 Acetyl-coenzyme A synthetase N-terminus Daes_0203 PF01584 CheW-like domain Daes_0204 PF00672 HAMP domain Daes_0204 PF02743 Cache domain Daes_0204 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_0205 PF01979 Amidohydrolase family Daes_0206 PF08668 HDOD domain Daes_0206 PF00563 EAL domain Daes_0207 PF01791 DeoC/LacD family aldolase Daes_0216 PF01613 Flavin reductase like domain Daes_0219 PF01966 HD domain Daes_0221 PF00069 Protein kinase domain Daes_0223 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Daes_0223 PF01476 LysM domain Daes_0224 PF01026 TatD related DNase Daes_0226 PF00892 EamA-like transporter family Daes_0228 PF01321 Creatinase/Prolidase N-terminal domain Daes_0228 PF00557 Metallopeptidase family M24 Daes_0229 PF04055 Radical SAM superfamily Daes_0230 PF00570 HRDC domain Daes_0230 PF16124 RecQ zinc-binding Daes_0230 PF09382 RQC domain Daes_0230 PF00270 DEAD/DEAH box helicase Daes_0230 PF00271 Helicase conserved C-terminal domain Daes_0233 PF00551 Formyl transferase Daes_0233 PF02911 Formyl transferase, C-terminal domain Daes_0234 PF01327 Polypeptide deformylase Daes_0235 PF01336 OB-fold nucleic acid binding domain Daes_0235 PF00152 tRNA synthetases class II (D, K and N) Daes_0235 PF02938 GAD domain Daes_0236 PF03129 Anticodon binding domain Daes_0236 PF13393 Histidyl-tRNA synthetase Daes_0237 PF00037 4Fe-4S binding domain Daes_0237 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Daes_0237 PF00384 Molybdopterin oxidoreductase Daes_0237 PF01568 Molydopterin dinucleotide binding domain Daes_0237 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Daes_0239 PF02653 Branched-chain amino acid transport system / permease component Daes_0241 PF02608 ABC transporter substrate-binding protein PnrA-like Daes_0242 PF00183 Hsp90 protein Daes_0245 PF00850 Histone deacetylase domain Daes_0253 PF01396 Topoisomerase DNA binding C4 zinc finger Daes_0253 PF01131 DNA topoisomerase Daes_0253 PF01751 Toprim domain Daes_0254 PF00535 Glycosyl transferase family 2 Daes_0255 PF01168 Alanine racemase, N-terminal domain Daes_0256 PF01618 MotA/TolQ/ExbB proton channel family Daes_0257 PF13677 Membrane MotB of proton-channel complex MotA/MotB Daes_0257 PF00691 OmpA family Daes_0258 PF00691 OmpA family Daes_0258 PF13677 Membrane MotB of proton-channel complex MotA/MotB Daes_0260 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Daes_0262 PF00813 FliP family Daes_0263 PF01313 Bacterial export proteins, family 3 Daes_0264 PF13654 AAA domain Daes_0264 PF05362 Lon protease (S16) C-terminal proteolytic domain Daes_0266 PF02590 Predicted SPOUT methyltransferase Daes_0269 PF02527 rRNA small subunit methyltransferase G Daes_0270 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain Daes_0270 PF07228 Stage II sporulation protein E (SpoIIE) Daes_0274 PF00155 Aminotransferase class I and II Daes_0275 PF02592 Putative vitamin uptake transporter Daes_0277 PF03485 Arginyl tRNA synthetase N terminal domain Daes_0277 PF00750 tRNA synthetases class I (R) Daes_0277 PF05746 DALR anticodon binding domain Daes_0281 PF00392 Bacterial regulatory proteins, gntR family Daes_0281 PF00155 Aminotransferase class I and II Daes_0283 PF06745 KaiC Daes_0283 PF18073 Rubredoxin metal binding domain Daes_0284 PF00342 Phosphoglucose isomerase Daes_0285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0285 PF00512 His Kinase A (phospho-acceptor) domain Daes_0290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Daes_0291 PF00528 Binding-protein-dependent transport system inner membrane component Daes_0292 PF00528 Binding-protein-dependent transport system inner membrane component Daes_0293 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Daes_0293 PF00005 ABC transporter Daes_0294 PF00005 ABC transporter Daes_0295 PF10396 GTP-binding protein TrmE N-terminus Daes_0295 PF12631 MnmE helical domain Daes_0295 PF01926 50S ribosome-binding GTPase Daes_0296 PF06968 Biotin and Thiamin Synthesis associated domain Daes_0296 PF04055 Radical SAM superfamily Daes_0298 PF10415 Fumarase C C-terminus Daes_0298 PF00206 Lyase Daes_0302 PF00037 4Fe-4S binding domain Daes_0302 PF02906 Iron only hydrogenase large subunit, C-terminal domain Daes_0303 PF12833 Helix-turn-helix domain Daes_0304 PF00892 EamA-like transporter family Daes_0305 PF00892 EamA-like transporter family Daes_0310 PF04101 Glycosyltransferase family 28 C-terminal domain Daes_0310 PF03033 Glycosyltransferase family 28 N-terminal domain Daes_0311 PF00534 Glycosyl transferases group 1 Daes_0312 PF01784 NIF3 (NGG1p interacting factor 3) Daes_0314 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Daes_0314 PF02542 YgbB family Daes_0316 PF01406 tRNA synthetases class I (C) catalytic domain Daes_0316 PF09190 DALR domain Daes_0332 PF01207 Dihydrouridine synthase (Dus) Daes_0334 PF00892 EamA-like transporter family Daes_0343 PF03707 Bacterial signalling protein N terminal repeat Daes_0343 PF00990 Diguanylate cyclase, GGDEF domain Daes_0343 PF00563 EAL domain Daes_0344 PF08448 PAS fold Daes_0344 PF00563 EAL domain Daes_0344 PF00990 Diguanylate cyclase, GGDEF domain Daes_0344 PF13426 PAS domain Daes_0344 PF08447 PAS fold Daes_0344 PF05231 MASE1 Daes_0349 PF00881 Nitroreductase family Daes_0352 PF03306 Alpha-acetolactate decarboxylase Daes_0353 PF00534 Glycosyl transferases group 1 Daes_0353 PF13439 Glycosyltransferase Family 4 Daes_0356 PF00672 HAMP domain Daes_0356 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_0356 PF02743 Cache domain Daes_0357 PF00460 Flagella basal body rod protein Daes_0357 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Daes_0357 PF07559 Flagellar basal body protein FlaE Daes_0359 PF00989 PAS fold Daes_0359 PF00512 His Kinase A (phospho-acceptor) domain Daes_0359 PF00672 HAMP domain Daes_0359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0361 PF03824 High-affinity nickel-transport protein Daes_0365 PF02562 PhoH-like protein Daes_0365 PF13638 PIN domain Daes_0366 PF00994 Probable molybdopterin binding domain Daes_0366 PF02464 Competence-damaged protein Daes_0368 PF13247 4Fe-4S dicluster domain Daes_0368 PF00037 4Fe-4S binding domain Daes_0373 PF05231 MASE1 Daes_0373 PF00563 EAL domain Daes_0373 PF08447 PAS fold Daes_0373 PF13426 PAS domain Daes_0373 PF08448 PAS fold Daes_0373 PF00990 Diguanylate cyclase, GGDEF domain Daes_0376 PF02687 FtsX-like permease family Daes_0376 PF12704 MacB-like periplasmic core domain Daes_0376 PF00005 ABC transporter Daes_0377 PF13438 Domain of unknown function (DUF4113) Daes_0377 PF00817 impB/mucB/samB family Daes_0377 PF11799 impB/mucB/samB family C-terminal domain Daes_0378 PF00717 Peptidase S24-like Daes_0381 PF02322 Cytochrome bd terminal oxidase subunit II Daes_0382 PF01654 Cytochrome bd terminal oxidase subunit I Daes_0383 PF00365 Phosphofructokinase Daes_0386 PF13542 Helix-turn-helix domain of transposase family ISL3 Daes_0386 PF01610 Transposase Daes_0386 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Daes_0388 PF00149 Calcineurin-like phosphoesterase Daes_0389 PF01435 Peptidase family M48 Daes_0390 PF00595 PDZ domain Daes_0391 PF01209 ubiE/COQ5 methyltransferase family Daes_0392 PF00158 Sigma-54 interaction domain Daes_0392 PF02954 Bacterial regulatory protein, Fis family Daes_0392 PF13426 PAS domain Daes_0395 PF01970 Tripartite tricarboxylate transporter TctA family Daes_0397 PF03401 Tripartite tricarboxylate transporter family receptor Daes_0409 PF02661 Fic/DOC family Daes_0456 PF01258 Prokaryotic dksA/traR C4-type zinc finger Daes_0463 PF01381 Helix-turn-helix Daes_0464 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB Daes_0477 PF01527 Transposase Daes_0486 PF02899 Phage integrase, N-terminal SAM-like domain Daes_0486 PF00589 Phage integrase family Daes_0491 PF13784 Fic/DOC family N-terminal Daes_0491 PF02661 Fic/DOC family Daes_0493 PF02661 Fic/DOC family Daes_0493 PF17841 BID domain of Bartonella effector protein (Bep) Daes_0495 PF01527 Transposase Daes_0499 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_0499 PF00672 HAMP domain Daes_0499 PF02203 Tar ligand binding domain homologue Daes_0500 PF03309 Type III pantothenate kinase Daes_0501 PF01965 DJ-1/PfpI family Daes_0502 PF00113 Enolase, C-terminal TIM barrel domain Daes_0502 PF03952 Enolase, N-terminal domain Daes_0503 PF01022 Bacterial regulatory protein, arsR family Daes_0507 PF00085 Thioredoxin Daes_0510 PF07291 Methylamine utilisation protein MauE Daes_0511 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Daes_0511 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Daes_0515 PF01965 DJ-1/PfpI family Daes_0515 PF12833 Helix-turn-helix domain Daes_0516 PF00672 HAMP domain Daes_0516 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0516 PF00512 His Kinase A (phospho-acceptor) domain Daes_0520 PF00881 Nitroreductase family Daes_0521 PF01638 HxlR-like helix-turn-helix Daes_0522 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0522 PF00512 His Kinase A (phospho-acceptor) domain Daes_0522 PF00072 Response regulator receiver domain Daes_0522 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Daes_0522 PF00672 HAMP domain Daes_0522 PF01627 Hpt domain Daes_0523 PF12762 ISXO2-like transposase domain Daes_0524 PF00072 Response regulator receiver domain Daes_0524 PF00512 His Kinase A (phospho-acceptor) domain Daes_0524 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0524 PF00672 HAMP domain Daes_0524 PF01627 Hpt domain Daes_0524 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Daes_0528 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Daes_0529 PF03063 Prismane/CO dehydrogenase family Daes_0530 PF00027 Cyclic nucleotide-binding domain Daes_0530 PF13545 Crp-like helix-turn-helix domain Daes_0531 PF05958 tRNA (Uracil-5-)-methyltransferase Daes_0532 PF03741 Integral membrane protein TerC family Daes_0533 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Daes_0534 PF06445 GyrI-like small molecule binding domain Daes_0534 PF12833 Helix-turn-helix domain Daes_0538 PF00005 ABC transporter Daes_0542 PF00501 AMP-binding enzyme Daes_0542 PF13193 AMP-binding enzyme C-terminal domain Daes_0543 PF07883 Cupin domain Daes_0544 PF13193 AMP-binding enzyme C-terminal domain Daes_0544 PF00501 AMP-binding enzyme Daes_0545 PF01381 Helix-turn-helix Daes_0547 PF00005 ABC transporter Daes_0548 PF03649 Uncharacterised protein family (UPF0014) Daes_0549 PF00158 Sigma-54 interaction domain Daes_0549 PF02954 Bacterial regulatory protein, Fis family Daes_0551 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0551 PF00512 His Kinase A (phospho-acceptor) domain Daes_0551 PF00072 Response regulator receiver domain Daes_0551 PF09308 LuxQ, periplasmic Daes_0552 PF13439 Glycosyltransferase Family 4 Daes_0552 PF00534 Glycosyl transferases group 1 Daes_0554 PF01170 Putative RNA methylase family UPF0020 Daes_0554 PF10672 S-adenosylmethionine-dependent methyltransferase Daes_0554 PF02926 THUMP domain Daes_0557 PF01740 STAS domain Daes_0560 PF00005 ABC transporter Daes_0560 PF00005 ABC transporter Daes_0560 PF00664 ABC transporter transmembrane region Daes_0560 PF00664 ABC transporter transmembrane region Daes_0566 PF00664 ABC transporter transmembrane region Daes_0566 PF04954 Siderophore-interacting protein Daes_0566 PF08021 Siderophore-interacting FAD-binding domain Daes_0566 PF00005 ABC transporter Daes_0567 PF00005 ABC transporter Daes_0568 PF00593 TonB dependent receptor Daes_0568 PF07715 TonB-dependent Receptor Plug Domain Daes_0574 PF01618 MotA/TolQ/ExbB proton channel family Daes_0575 PF01618 MotA/TolQ/ExbB proton channel family Daes_0576 PF02472 Biopolymer transport protein ExbD/TolR Daes_0580 PF00005 ABC transporter Daes_0583 PF07715 TonB-dependent Receptor Plug Domain Daes_0583 PF00593 TonB dependent receptor Daes_0585 PF00664 ABC transporter transmembrane region Daes_0585 PF00005 ABC transporter Daes_0586 PF02492 CobW/HypB/UreG, nucleotide-binding domain Daes_0589 PF07690 Major Facilitator Superfamily Daes_0590 PF01047 MarR family Daes_0592 PF10396 GTP-binding protein TrmE N-terminus Daes_0592 PF01926 50S ribosome-binding GTPase Daes_0592 PF12631 MnmE helical domain Daes_0593 PF06968 Biotin and Thiamin Synthesis associated domain Daes_0593 PF04055 Radical SAM superfamily Daes_0595 PF00206 Lyase Daes_0595 PF10415 Fumarase C C-terminus Daes_0599 PF02906 Iron only hydrogenase large subunit, C-terminal domain Daes_0599 PF00037 4Fe-4S binding domain Daes_0600 PF01678 Diaminopimelate epimerase Daes_0601 PF13520 Amino acid permease Daes_0602 PF03466 LysR substrate binding domain Daes_0602 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Daes_0605 PF00005 ABC transporter Daes_0609 PF00072 Response regulator receiver domain Daes_0609 PF00990 Diguanylate cyclase, GGDEF domain Daes_0610 PF02580 D-Tyr-tRNA(Tyr) deacylase Daes_0612 PF01242 6-pyruvoyl tetrahydropterin synthase Daes_0614 PF14579 Helix-hairpin-helix motif Daes_0614 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Daes_0614 PF07733 Bacterial DNA polymerase III alpha NTPase domain Daes_0614 PF01336 OB-fold nucleic acid binding domain Daes_0614 PF02811 PHP domain Daes_0615 PF00939 Sodium:sulfate symporter transmembrane region Daes_0616 PF00512 His Kinase A (phospho-acceptor) domain Daes_0616 PF01627 Hpt domain Daes_0616 PF00072 Response regulator receiver domain Daes_0616 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0624 PF16658 Class II release factor RF3, C-terminal domain Daes_0624 PF00009 Elongation factor Tu GTP binding domain Daes_0625 PF07730 Histidine kinase Daes_0625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0626 PF05594 Haemagluttinin repeat Daes_0626 PF05860 haemagglutination activity domain Daes_0626 PF13332 Hemagglutinin repeat Daes_0626 PF13018 Extended Signal Peptide of Type V secretion system Daes_0626 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain Daes_0628 PF01527 Transposase Daes_0629 PF04829 Pre-toxin domain with VENN motif Daes_0629 PF05860 haemagglutination activity domain Daes_0629 PF15526 Novel toxin 21 Daes_0629 PF05594 Haemagluttinin repeat Daes_0629 PF13332 Hemagglutinin repeat Daes_0630 PF08479 POTRA domain, ShlB-type Daes_0630 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Daes_0630 PF17287 POTRA domain Daes_0631 PF00072 Response regulator receiver domain Daes_0631 PF00196 Bacterial regulatory proteins, luxR family Daes_0635 PF07687 Peptidase dimerisation domain Daes_0635 PF01546 Peptidase family M20/M25/M40 Daes_0636 PF03315 Serine dehydratase beta chain Daes_0636 PF03313 Serine dehydratase alpha chain Daes_0638 PF00005 ABC transporter Daes_0638 PF17912 MalK OB fold domain Daes_0639 PF00149 Calcineurin-like phosphoesterase Daes_0640 PF00528 Binding-protein-dependent transport system inner membrane component Daes_0642 PF13344 Haloacid dehalogenase-like hydrolase Daes_0644 PF00375 Sodium:dicarboxylate symporter family Daes_0646 PF07228 Stage II sporulation protein E (SpoIIE) Daes_0646 PF00672 HAMP domain Daes_0647 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_0647 PF00672 HAMP domain Daes_0647 PF13426 PAS domain Daes_0648 PF00565 Staphylococcal nuclease homologue Daes_0653 PF17763 Glutaminase/Asparaginase C-terminal domain Daes_0653 PF00710 Asparaginase, N-terminal Daes_0654 PF08335 GlnD PII-uridylyltransferase Daes_0654 PF01966 HD domain Daes_0655 PF00543 Nitrogen regulatory protein P-II Daes_0656 PF00909 Ammonium Transporter Family Daes_0661 PF01544 CorA-like Mg2+ transporter protein Daes_0663 PF01810 LysE type translocator Daes_0664 PF01594 AI-2E family transporter Daes_0665 PF00501 AMP-binding enzyme Daes_0665 PF13193 AMP-binding enzyme C-terminal domain Daes_0665 PF16177 Acetyl-coenzyme A synthetase N-terminus Daes_0666 PF04397 LytTr DNA-binding domain Daes_0669 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Daes_0669 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Daes_0674 PF00753 Metallo-beta-lactamase superfamily Daes_0675 PF01773 Na+ dependent nucleoside transporter N-terminus Daes_0675 PF07662 Na+ dependent nucleoside transporter C-terminus Daes_0675 PF07670 Nucleoside recognition Daes_0678 PF00072 Response regulator receiver domain Daes_0684 PF13426 PAS domain Daes_0684 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0684 PF00072 Response regulator receiver domain Daes_0687 PF00155 Aminotransferase class I and II Daes_0688 PF01343 Peptidase family S49 Daes_0689 PF02654 Cobalamin-5-phosphate synthase Daes_0690 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase Daes_0691 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Daes_0691 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Daes_0696 PF01527 Transposase Daes_0698 PF08241 Methyltransferase domain Daes_0700 PF13537 Glutamine amidotransferase domain Daes_0700 PF00733 Asparagine synthase Daes_0701 PF08241 Methyltransferase domain Daes_0702 PF00535 Glycosyl transferase family 2 Daes_0703 PF01938 TRAM domain Daes_0703 PF00919 Uncharacterized protein family UPF0004 Daes_0703 PF04055 Radical SAM superfamily Daes_0705 PF01619 Proline dehydrogenase Daes_0706 PF06445 GyrI-like small molecule binding domain Daes_0706 PF12833 Helix-turn-helix domain Daes_0707 PF00005 ABC transporter Daes_0707 PF00664 ABC transporter transmembrane region Daes_0709 PF01938 TRAM domain Daes_0709 PF04055 Radical SAM superfamily Daes_0709 PF00919 Uncharacterized protein family UPF0004 Daes_0712 PF13847 Methyltransferase domain Daes_0712 PF03551 Transcriptional regulator PadR-like family Daes_0713 PF17103 Stealth protein CR4, conserved region 4 Daes_0713 PF17102 Stealth protein CR3, conserved region 3 Daes_0713 PF00534 Glycosyl transferases group 1 Daes_0713 PF17101 Stealth protein CR1, conserved region 1 Daes_0713 PF11380 Stealth protein CR2, conserved region 2 Daes_0715 PF13537 Glutamine amidotransferase domain Daes_0715 PF00733 Asparagine synthase Daes_0716 PF00733 Asparagine synthase Daes_0716 PF13537 Glutamine amidotransferase domain Daes_0717 PF00534 Glycosyl transferases group 1 Daes_0717 PF13439 Glycosyltransferase Family 4 Daes_0720 PF02464 Competence-damaged protein Daes_0723 PF01960 ArgJ family Daes_0725 PF02405 Permease MlaE Daes_0726 PF00005 ABC transporter Daes_0730 PF12850 Calcineurin-like phosphoesterase superfamily domain Daes_0732 PF00990 Diguanylate cyclase, GGDEF domain Daes_0732 PF03707 Bacterial signalling protein N terminal repeat Daes_0732 PF00563 EAL domain Daes_0734 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Daes_0734 PF07685 CobB/CobQ-like glutamine amidotransferase domain Daes_0735 PF11700 Vacuole effluxer Atg22 like Daes_0736 PF01871 AMMECR1 Daes_0737 PF11871 Domain of unknown function (DUF3391) Daes_0737 PF01966 HD domain Daes_0744 PF10458 Valyl tRNA synthetase tRNA binding arm Daes_0744 PF00133 tRNA synthetases class I (I, L, M and V) Daes_0744 PF08264 Anticodon-binding domain of tRNA Daes_0747 PF00551 Formyl transferase Daes_0748 PF01888 CbiD Daes_0749 PF11066 Protein of unknown function (DUF2867) Daes_0749 PF13460 NAD(P)H-binding Daes_0751 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Daes_0751 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Daes_0753 PF00202 Aminotransferase class-III Daes_0754 PF11760 Cobalamin synthesis G N-terminal Daes_0754 PF11761 Cobalamin biosynthesis central region Daes_0754 PF01890 Cobalamin synthesis G C-terminus Daes_0755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Daes_0756 PF02085 Class III cytochrome C family Daes_0759 PF00155 Aminotransferase class I and II Daes_0761 PF02978 Signal peptide binding domain Daes_0761 PF02881 SRP54-type protein, helical bundle domain Daes_0761 PF00448 SRP54-type protein, GTPase domain Daes_0762 PF00886 Ribosomal protein S16 Daes_0764 PF01782 RimM N-terminal domain Daes_0764 PF05239 PRC-barrel domain Daes_0765 PF09936 SAM-dependent RNA methyltransferase Daes_0765 PF01746 tRNA (Guanine-1)-methyltransferase Daes_0766 PF01245 Ribosomal protein L19 Daes_0767 PF01351 Ribonuclease HII Daes_0768 PF02021 Uncharacterised protein family UPF0102 Daes_0769 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Daes_0770 PF04055 Radical SAM superfamily Daes_0770 PF06968 Biotin and Thiamin Synthesis associated domain Daes_0771 PF02632 BioY family Daes_0773 PF00381 PTS HPr component phosphorylation site Daes_0774 PF02896 PEP-utilising enzyme, TIM barrel domain Daes_0774 PF00391 PEP-utilising enzyme, mobile domain Daes_0774 PF05524 PEP-utilising enzyme, N-terminal Daes_0775 PF01668 SmpB protein Daes_0777 PF02954 Bacterial regulatory protein, Fis family Daes_0777 PF00158 Sigma-54 interaction domain Daes_0777 PF00072 Response regulator receiver domain Daes_0779 PF07992 Pyridine nucleotide-disulphide oxidoreductase Daes_0779 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Daes_0782 PF01593 Flavin containing amine oxidoreductase Daes_0784 PF02754 Cysteine-rich domain Daes_0786 PF02754 Cysteine-rich domain Daes_0788 PF03916 Polysulphide reductase, NrfD Daes_0789 PF13247 4Fe-4S dicluster domain Daes_0791 PF01565 FAD binding domain Daes_0791 PF02913 FAD linked oxidases, C-terminal domain Daes_0794 PF07516 SecA Wing and Scaffold domain Daes_0794 PF02810 SEC-C motif Daes_0794 PF07517 SecA DEAD-like domain Daes_0794 PF01043 SecA preprotein cross-linking domain Daes_0797 PF01209 ubiE/COQ5 methyltransferase family Daes_0799 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Daes_0799 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Daes_0799 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Daes_0801 PF00348 Polyprenyl synthetase Daes_0802 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Daes_0802 PF00586 AIR synthase related protein, N-terminal domain Daes_0802 PF02769 AIR synthase related protein, C-terminal domain Daes_0804 PF13426 PAS domain Daes_0804 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_0804 PF00672 HAMP domain Daes_0806 PF02915 Rubrerythrin Daes_0807 PF06397 Desulfoferrodoxin, N-terminal domain Daes_0807 PF01880 Desulfoferrodoxin Daes_0808 PF00301 Rubredoxin Daes_0809 PF00753 Metallo-beta-lactamase superfamily Daes_0809 PF00258 Flavodoxin Daes_0810 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Daes_0811 PF09962 Uncharacterized conserved protein (DUF2196) Daes_0813 PF00691 OmpA family Daes_0813 PF05736 OprF membrane domain Daes_0814 PF01370 NAD dependent epimerase/dehydratase family Daes_0815 PF04453 LPS transport system D Daes_0815 PF03968 OstA-like protein Daes_0816 PF01119 DNA mismatch repair protein, C-terminal domain Daes_0816 PF08676 MutL C terminal dimerisation domain Daes_0817 PF01168 Alanine racemase, N-terminal domain Daes_0817 PF00842 Alanine racemase, C-terminal domain Daes_0819 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_0819 PF00672 HAMP domain Daes_0819 PF02743 Cache domain Daes_0820 PF16736 Single Cache-like Daes_0820 PF00989 PAS fold Daes_0820 PF00512 His Kinase A (phospho-acceptor) domain Daes_0820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0821 PF01384 Phosphate transporter family Daes_0823 PF01966 HD domain Daes_0823 PF00072 Response regulator receiver domain Daes_0824 PF00920 Dehydratase family Daes_0825 PF02371 Transposase IS116/IS110/IS902 family Daes_0825 PF01548 Transposase Daes_0827 PF06628 Catalase-related immune-responsive Daes_0827 PF00199 Catalase Daes_0828 PF07685 CobB/CobQ-like glutamine amidotransferase domain Daes_0828 PF00155 Aminotransferase class I and II Daes_0828 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Daes_0829 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Daes_0831 PF00210 Ferritin-like domain Daes_0832 PF10502 Signal peptidase, peptidase S26 Daes_0833 PF00009 Elongation factor Tu GTP binding domain Daes_0833 PF03144 Elongation factor Tu domain 2 Daes_0833 PF00679 Elongation factor G C-terminus Daes_0833 PF06421 GTP-binding protein LepA C-terminus Daes_0839 PF08281 Sigma-70, region 4 Daes_0839 PF04542 Sigma-70 region 2 Daes_0841 PF00196 Bacterial regulatory proteins, luxR family Daes_0841 PF00072 Response regulator receiver domain Daes_0842 PF00497 Bacterial extracellular solute-binding proteins, family 3 Daes_0843 PF00528 Binding-protein-dependent transport system inner membrane component Daes_0844 PF00005 ABC transporter Daes_0845 PF04055 Radical SAM superfamily Daes_0845 PF12544 Lysine-2,3-aminomutase Daes_0847 PF03193 RsgA GTPase Daes_0851 PF00873 AcrB/AcrD/AcrF family Daes_0852 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Daes_0852 PF00529 HlyD membrane-fusion protein of T1SS Daes_0861 PF13380 CoA binding domain Daes_0861 PF00583 Acetyltransferase (GNAT) family Daes_0861 PF13607 Succinyl-CoA ligase like flavodoxin domain Daes_0862 PF01361 Tautomerase enzyme Daes_0863 PF02085 Class III cytochrome C family Daes_0864 PF13247 4Fe-4S dicluster domain Daes_0865 PF03916 Polysulphide reductase, NrfD Daes_0868 PF02754 Cysteine-rich domain Daes_0869 PF01661 Macro domain Daes_0870 PF00227 Proteasome subunit Daes_0871 PF07724 AAA domain (Cdc48 subfamily) Daes_0871 PF00004 ATPase family associated with various cellular activities (AAA) Daes_0872 PF00491 Arginase family Daes_0874 PF06574 FAD synthetase Daes_0874 PF01687 Riboflavin kinase Daes_0875 PF01435 Peptidase family M48 Daes_0876 PF07497 Rho termination factor, RNA-binding domain Daes_0876 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Daes_0876 PF07498 Rho termination factor, N-terminal domain Daes_0878 PF01195 Peptidyl-tRNA hydrolase Daes_0879 PF14693 Ribosomal protein TL5, C-terminal domain Daes_0879 PF01386 Ribosomal L25p family Daes_0880 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Daes_0880 PF14572 Phosphoribosyl synthetase-associated domain Daes_0881 PF00288 GHMP kinases N terminal domain Daes_0881 PF08544 GHMP kinases C terminal Daes_0882 PF13180 PDZ domain Daes_0883 PF00205 Thiamine pyrophosphate enzyme, central domain Daes_0883 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Daes_0883 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Daes_0884 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0884 PF13493 Domain of unknown function (DUF4118) Daes_0884 PF02702 Osmosensitive K+ channel His kinase sensor domain Daes_0884 PF00512 His Kinase A (phospho-acceptor) domain Daes_0885 PF17200 Single Cache domain 2 Daes_0885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_0885 PF00672 HAMP domain Daes_0886 PF04264 YceI-like domain Daes_0888 PF00005 ABC transporter Daes_0889 PF01032 FecCD transport family Daes_0891 PF00491 Arginase family Daes_0892 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Daes_0893 PF16653 Saccharopine dehydrogenase C-terminal domain Daes_0893 PF03435 Saccharopine dehydrogenase NADP binding domain Daes_0894 PF17810 Arginine decarboxylase helical bundle domain Daes_0894 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Daes_0894 PF17944 Arginine decarboxylase C-terminal helical extension Daes_0895 PF01933 Uncharacterised protein family UPF0052 Daes_0896 PF16197 Ketoacyl-synthetase C-terminal extension Daes_0896 PF08990 Erythronolide synthase docking Daes_0896 PF09277 Erythronolide synthase, docking Daes_0896 PF14765 Polyketide synthase dehydratase Daes_0896 PF02801 Beta-ketoacyl synthase, C-terminal domain Daes_0896 PF08659 KR domain Daes_0896 PF00550 Phosphopantetheine attachment site Daes_0896 PF08240 Alcohol dehydrogenase GroES-like domain Daes_0896 PF00109 Beta-ketoacyl synthase, N-terminal domain Daes_0896 PF00698 Acyl transferase domain Daes_0897 PF00005 ABC transporter Daes_0897 PF03412 Peptidase C39 family Daes_0897 PF00664 ABC transporter transmembrane region Daes_0898 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Daes_0898 PF00529 HlyD membrane-fusion protein of T1SS Daes_0900 PF00072 Response regulator receiver domain Daes_0901 PF01554 MatE Daes_0904 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0904 PF00512 His Kinase A (phospho-acceptor) domain Daes_0905 PF13581 Histidine kinase-like ATPase domain Daes_0906 PF05145 Transition state regulatory protein AbrB Daes_0907 PF13742 OB-fold nucleic acid binding domain Daes_0907 PF02601 Exonuclease VII, large subunit Daes_0908 PF01551 Peptidase family M23 Daes_0908 PF08525 Opacity-associated protein A N-terminal motif Daes_0908 PF01476 LysM domain Daes_0909 PF02609 Exonuclease VII small subunit Daes_0910 PF00348 Polyprenyl synthetase Daes_0911 PF02780 Transketolase, C-terminal domain Daes_0911 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Daes_0911 PF02779 Transketolase, pyrimidine binding domain Daes_0912 PF02810 SEC-C motif Daes_0913 PF00472 RF-1 domain Daes_0917 PF01790 Prolipoprotein diacylglyceryl transferase Daes_0920 PF02401 LytB protein Daes_0922 PF04055 Radical SAM superfamily Daes_0922 PF06463 Molybdenum Cofactor Synthesis C Daes_0923 PF00990 Diguanylate cyclase, GGDEF domain Daes_0923 PF00563 EAL domain Daes_0923 PF03707 Bacterial signalling protein N terminal repeat Daes_0924 PF11849 Domain of unknown function (DUF3369) Daes_0925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_0925 PF00072 Response regulator receiver domain Daes_0925 PF13426 PAS domain Daes_0927 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_0929 PF00270 DEAD/DEAH box helicase Daes_0929 PF00271 Helicase conserved C-terminal domain Daes_0930 PF01176 Translation initiation factor 1A / IF-1 Daes_0931 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Daes_0937 PF00501 AMP-binding enzyme Daes_0937 PF14535 AMP-binding enzyme C-terminal domain Daes_0938 PF06750 Bacterial Peptidase A24 N-terminal domain Daes_0938 PF01478 Type IV leader peptidase family Daes_0939 PF00561 alpha/beta hydrolase fold Daes_0943 PF07556 Protein of unknown function (DUF1538) Daes_0944 PF07556 Protein of unknown function (DUF1538) Daes_0945 PF00290 Tryptophan synthase alpha chain Daes_0946 PF00291 Pyridoxal-phosphate dependent enzyme Daes_0947 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Daes_0948 PF00218 Indole-3-glycerol phosphate synthase Daes_0949 PF00591 Glycosyl transferase family, a/b domain Daes_0949 PF02885 Glycosyl transferase family, helical bundle domain Daes_0950 PF00591 Glycosyl transferase family, a/b domain Daes_0950 PF02885 Glycosyl transferase family, helical bundle domain Daes_0950 PF00117 Glutamine amidotransferase class-I Daes_0951 PF04715 Anthranilate synthase component I, N terminal region Daes_0951 PF00425 chorismate binding enzyme Daes_0953 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Daes_0954 PF01817 Chorismate mutase type II Daes_0954 PF00800 Prephenate dehydratase Daes_0954 PF01842 ACT domain Daes_0955 PF01959 3-dehydroquinate synthase II Daes_0956 PF01791 DeoC/LacD family aldolase Daes_0957 PF00909 Ammonium Transporter Family Daes_0958 PF00543 Nitrogen regulatory protein P-II Daes_0959 PF00563 EAL domain Daes_0959 PF10388 EAL-domain associated signalling protein domain Daes_0961 PF00202 Aminotransferase class-III Daes_0962 PF00155 Aminotransferase class I and II Daes_0966 PF02772 S-adenosylmethionine synthetase, central domain Daes_0966 PF00438 S-adenosylmethionine synthetase, N-terminal domain Daes_0966 PF02773 S-adenosylmethionine synthetase, C-terminal domain Daes_0967 PF02261 Aspartate decarboxylase Daes_0968 PF02569 Pantoate-beta-alanine ligase Daes_0969 PF00990 Diguanylate cyclase, GGDEF domain Daes_0969 PF00563 EAL domain Daes_0971 PF03477 ATP cone domain Daes_0971 PF13597 Anaerobic ribonucleoside-triphosphate reductase Daes_0973 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Daes_0973 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Daes_0973 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Daes_0973 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Daes_0974 PF00672 HAMP domain Daes_0974 PF02203 Tar ligand binding domain homologue Daes_0974 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_0976 PF01435 Peptidase family M48 Daes_0982 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Daes_0983 PF00528 Binding-protein-dependent transport system inner membrane component Daes_0984 PF00528 Binding-protein-dependent transport system inner membrane component Daes_0985 PF00005 ABC transporter Daes_0986 PF00005 ABC transporter Daes_0987 PF01118 Semialdehyde dehydrogenase, NAD binding domain Daes_0987 PF02774 Semialdehyde dehydrogenase, dimerisation domain Daes_0989 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Daes_0990 PF00873 AcrB/AcrD/AcrF family Daes_0992 PF00027 Cyclic nucleotide-binding domain Daes_0992 PF00520 Ion transport protein Daes_0998 PF01842 ACT domain Daes_0998 PF00551 Formyl transferase Daes_0999 PF13580 SIS domain Daes_1000 PF00512 His Kinase A (phospho-acceptor) domain Daes_1000 PF01627 Hpt domain Daes_1000 PF00072 Response regulator receiver domain Daes_1000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1000 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Daes_1000 PF00672 HAMP domain Daes_1001 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1001 PF00072 Response regulator receiver domain Daes_1001 PF09308 LuxQ, periplasmic Daes_1001 PF00512 His Kinase A (phospho-acceptor) domain Daes_1002 PF01627 Hpt domain Daes_1002 PF17149 Periplasmic sensor domain found in signal transduction proteins Daes_1002 PF00672 HAMP domain Daes_1002 PF00072 Response regulator receiver domain Daes_1002 PF00512 His Kinase A (phospho-acceptor) domain Daes_1002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1003 PF02954 Bacterial regulatory protein, Fis family Daes_1003 PF00158 Sigma-54 interaction domain Daes_1003 PF00072 Response regulator receiver domain Daes_1004 PF00072 Response regulator receiver domain Daes_1004 PF13188 PAS domain Daes_1004 PF08448 PAS fold Daes_1004 PF00512 His Kinase A (phospho-acceptor) domain Daes_1004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1006 PF01925 Sulfite exporter TauE/SafE Daes_1007 PF00072 Response regulator receiver domain Daes_1007 PF02954 Bacterial regulatory protein, Fis family Daes_1007 PF00158 Sigma-54 interaction domain Daes_1008 PF00072 Response regulator receiver domain Daes_1008 PF00158 Sigma-54 interaction domain Daes_1009 PF00158 Sigma-54 interaction domain Daes_1009 PF02954 Bacterial regulatory protein, Fis family Daes_1009 PF00072 Response regulator receiver domain Daes_1010 PF00512 His Kinase A (phospho-acceptor) domain Daes_1010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1011 PF02954 Bacterial regulatory protein, Fis family Daes_1011 PF00158 Sigma-54 interaction domain Daes_1011 PF00072 Response regulator receiver domain Daes_1012 PF00391 PEP-utilising enzyme, mobile domain Daes_1012 PF02896 PEP-utilising enzyme, TIM barrel domain Daes_1012 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Daes_1013 PF03773 Predicted permease Daes_1016 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment Daes_1016 PF01297 Zinc-uptake complex component A periplasmic Daes_1017 PF01869 BadF/BadG/BcrA/BcrD ATPase family Daes_1018 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component Daes_1020 PF00682 HMGL-like Daes_1021 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Daes_1022 PF00543 Nitrogen regulatory protein P-II Daes_1023 PF00543 Nitrogen regulatory protein P-II Daes_1024 PF00148 Nitrogenase component 1 type Oxidoreductase Daes_1025 PF00148 Nitrogenase component 1 type Oxidoreductase Daes_1026 PF02579 Dinitrogenase iron-molybdenum cofactor Daes_1026 PF04055 Radical SAM superfamily Daes_1028 PF00148 Nitrogenase component 1 type Oxidoreductase Daes_1029 PF00148 Nitrogenase component 1 type Oxidoreductase Daes_1030 PF02579 Dinitrogenase iron-molybdenum cofactor Daes_1030 PF04055 Radical SAM superfamily Daes_1032 PF00158 Sigma-54 interaction domain Daes_1032 PF02954 Bacterial regulatory protein, Fis family Daes_1032 PF01590 GAF domain Daes_1034 PF12849 PBP superfamily domain Daes_1035 PF00528 Binding-protein-dependent transport system inner membrane component Daes_1036 PF00528 Binding-protein-dependent transport system inner membrane component Daes_1037 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_1037 PF00672 HAMP domain Daes_1037 PF13426 PAS domain Daes_1038 PF04055 Radical SAM superfamily Daes_1038 PF08497 Radical SAM N-terminal Daes_1038 PF11842 Domain of unknown function (DUF3362) Daes_1040 PF00271 Helicase conserved C-terminal domain Daes_1040 PF00270 DEAD/DEAH box helicase Daes_1041 PF01513 ATP-NAD kinase Daes_1042 PF00285 Citrate synthase, C-terminal domain Daes_1043 PF13247 4Fe-4S dicluster domain Daes_1043 PF00037 4Fe-4S binding domain Daes_1045 PF01545 Cation efflux family Daes_1045 PF16916 Dimerisation domain of Zinc Transporter Daes_1046 PF02660 Glycerol-3-phosphate acyltransferase Daes_1047 PF08206 Ribonuclease B OB domain Daes_1047 PF00773 RNB domain Daes_1048 PF04193 PQ loop repeat Daes_1049 PF01808 AICARFT/IMPCHase bienzyme Daes_1049 PF02142 MGS-like domain Daes_1050 PF00672 HAMP domain Daes_1050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_1050 PF17200 Single Cache domain 2 Daes_1051 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_1051 PF00672 HAMP domain Daes_1051 PF12729 Four helix bundle sensory module for signal transduction Daes_1053 PF00709 Adenylosuccinate synthetase Daes_1054 PF09115 DNA polymerase III, delta subunit, C terminal Daes_1061 PF10415 Fumarase C C-terminus Daes_1061 PF00206 Lyase Daes_1062 PF03330 Lytic transglycolase Daes_1062 PF05036 Sporulation related domain Daes_1064 PF08448 PAS fold Daes_1064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1064 PF13188 PAS domain Daes_1064 PF00512 His Kinase A (phospho-acceptor) domain Daes_1064 PF00072 Response regulator receiver domain Daes_1065 PF00158 Sigma-54 interaction domain Daes_1065 PF00072 Response regulator receiver domain Daes_1065 PF02954 Bacterial regulatory protein, Fis family Daes_1066 PF00216 Bacterial DNA-binding protein Daes_1068 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Daes_1068 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Daes_1068 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Daes_1068 PF10371 Domain of unknown function Daes_1068 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Daes_1069 PF02652 L-lactate permease Daes_1070 PF01565 FAD binding domain Daes_1070 PF02913 FAD linked oxidases, C-terminal domain Daes_1071 PF02754 Cysteine-rich domain Daes_1072 PF01515 Phosphate acetyl/butaryl transferase Daes_1072 PF07085 DRTGG domain Daes_1073 PF00871 Acetokinase family Daes_1074 PF02589 LUD domain Daes_1075 PF13183 4Fe-4S dicluster domain Daes_1075 PF02589 LUD domain Daes_1075 PF11870 Domain of unknown function (DUF3390) Daes_1076 PF00672 HAMP domain Daes_1076 PF13426 PAS domain Daes_1076 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_1084 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Daes_1085 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Daes_1086 PF00361 Proton-conducting membrane transporter Daes_1087 PF00361 Proton-conducting membrane transporter Daes_1091 PF00072 Response regulator receiver domain Daes_1091 PF00486 Transcriptional regulatory protein, C terminal Daes_1095 PF00072 Response regulator receiver domain Daes_1095 PF00196 Bacterial regulatory proteins, luxR family Daes_1097 PF02954 Bacterial regulatory protein, Fis family Daes_1097 PF00072 Response regulator receiver domain Daes_1097 PF00158 Sigma-54 interaction domain Daes_1098 PF00690 Cation transporter/ATPase, N-terminus Daes_1098 PF00689 Cation transporting ATPase, C-terminus Daes_1099 PF01451 Low molecular weight phosphotyrosine protein phosphatase Daes_1100 PF00916 Sulfate permease family Daes_1100 PF01740 STAS domain Daes_1101 PF00158 Sigma-54 interaction domain Daes_1101 PF00072 Response regulator receiver domain Daes_1103 PF00005 ABC transporter Daes_1105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1105 PF00512 His Kinase A (phospho-acceptor) domain Daes_1107 PF00593 TonB dependent receptor Daes_1107 PF07715 TonB-dependent Receptor Plug Domain Daes_1108 PF00486 Transcriptional regulatory protein, C terminal Daes_1108 PF00072 Response regulator receiver domain Daes_1109 PF00700 Bacterial flagellin C-terminal helical region Daes_1109 PF00669 Bacterial flagellin N-terminal helical region Daes_1111 PF03963 Flagellar hook capping protein - N-terminal region Daes_1111 PF13861 FlgD Tudor-like domain Daes_1111 PF13860 FlgD Ig-like domain Daes_1112 PF00460 Flagella basal body rod protein Daes_1112 PF07559 Flagellar basal body protein FlaE Daes_1112 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Daes_1113 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Daes_1113 PF00460 Flagella basal body rod protein Daes_1116 PF00672 HAMP domain Daes_1116 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1116 PF00512 His Kinase A (phospho-acceptor) domain Daes_1117 PF00486 Transcriptional regulatory protein, C terminal Daes_1117 PF00072 Response regulator receiver domain Daes_1118 PF02321 Outer membrane efflux protein Daes_1119 PF13533 Biotin-lipoyl like Daes_1120 PF00873 AcrB/AcrD/AcrF family Daes_1122 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_1122 PF00672 HAMP domain Daes_1126 PF12704 MacB-like periplasmic core domain Daes_1126 PF00005 ABC transporter Daes_1126 PF02687 FtsX-like permease family Daes_1127 PF12704 MacB-like periplasmic core domain Daes_1127 PF02687 FtsX-like permease family Daes_1127 PF00005 ABC transporter Daes_1132 PF07859 alpha/beta hydrolase fold Daes_1133 PF00512 His Kinase A (phospho-acceptor) domain Daes_1133 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1133 PF09308 LuxQ, periplasmic Daes_1133 PF00072 Response regulator receiver domain Daes_1134 PF00158 Sigma-54 interaction domain Daes_1134 PF02954 Bacterial regulatory protein, Fis family Daes_1134 PF00072 Response regulator receiver domain Daes_1135 PF08448 PAS fold Daes_1135 PF00072 Response regulator receiver domain Daes_1135 PF13188 PAS domain Daes_1135 PF00512 His Kinase A (phospho-acceptor) domain Daes_1135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1136 PF00120 Glutamine synthetase, catalytic domain Daes_1139 PF00528 Binding-protein-dependent transport system inner membrane component Daes_1140 PF00528 Binding-protein-dependent transport system inner membrane component Daes_1141 PF00005 ABC transporter Daes_1142 PF00005 ABC transporter Daes_1142 PF17912 MalK OB fold domain Daes_1144 PF01568 Molydopterin dinucleotide binding domain Daes_1144 PF00384 Molybdopterin oxidoreductase Daes_1144 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Daes_1148 PF16859 Tetracyclin repressor-like, C-terminal domain Daes_1148 PF00440 Bacterial regulatory proteins, tetR family Daes_1151 PF02875 Mur ligase family, glutamate ligase domain Daes_1151 PF08245 Mur ligase middle domain Daes_1152 PF03841 L-seryl-tRNA selenium transferase Daes_1152 PF12390 Selenocysteine synthase N terminal Daes_1153 PF02127 Aminopeptidase I zinc metalloprotease (M18) Daes_1155 PF03144 Elongation factor Tu domain 2 Daes_1155 PF00009 Elongation factor Tu GTP binding domain Daes_1155 PF09107 Elongation factor SelB, winged helix Daes_1155 PF09106 Elongation factor SelB, winged helix Daes_1157 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Daes_1158 PF01274 Malate synthase Daes_1161 PF00132 Bacterial transferase hexapeptide (six repeats) Daes_1162 PF00392 Bacterial regulatory proteins, gntR family Daes_1162 PF07702 UTRA domain Daes_1163 PF06754 Phosphonate metabolism protein PhnG Daes_1165 PF05861 Bacterial phosphonate metabolism protein (PhnI) Daes_1166 PF06007 Phosphonate metabolism protein PhnJ Daes_1167 PF00005 ABC transporter Daes_1168 PF00005 ABC transporter Daes_1169 PF07969 Amidohydrolase family Daes_1170 PF00005 ABC transporter Daes_1172 PF00528 Binding-protein-dependent transport system inner membrane component Daes_1177 PF18030 RimK PreATP-grasp domain Daes_1177 PF08443 RimK-like ATP-grasp domain Daes_1182 PF13614 AAA domain Daes_1184 PF00384 Molybdopterin oxidoreductase Daes_1184 PF10518 TAT (twin-arginine translocation) pathway signal sequence Daes_1184 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Daes_1184 PF01568 Molydopterin dinucleotide binding domain Daes_1185 PF13247 4Fe-4S dicluster domain Daes_1190 PF00512 His Kinase A (phospho-acceptor) domain Daes_1190 PF13188 PAS domain Daes_1190 PF13426 PAS domain Daes_1190 PF00989 PAS fold Daes_1190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1191 PF00158 Sigma-54 interaction domain Daes_1191 PF00072 Response regulator receiver domain Daes_1191 PF02954 Bacterial regulatory protein, Fis family Daes_1192 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Daes_1192 PF02896 PEP-utilising enzyme, TIM barrel domain Daes_1192 PF00391 PEP-utilising enzyme, mobile domain Daes_1195 PF08668 HDOD domain Daes_1196 PF12706 Beta-lactamase superfamily domain Daes_1196 PF00753 Metallo-beta-lactamase superfamily Daes_1197 PF00072 Response regulator receiver domain Daes_1197 PF00486 Transcriptional regulatory protein, C terminal Daes_1198 PF04468 PSP1 C-terminal conserved region Daes_1199 PF01588 Putative tRNA binding domain Daes_1199 PF00133 tRNA synthetases class I (I, L, M and V) Daes_1199 PF09334 tRNA synthetases class I (M) Daes_1204 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Daes_1204 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Daes_1204 PF02142 MGS-like domain Daes_1205 PF00156 Phosphoribosyl transferase domain Daes_1206 PF01380 SIS domain Daes_1206 PF00571 CBS domain Daes_1208 PF00905 Penicillin binding protein transpeptidase domain Daes_1208 PF00912 Transglycosylase Daes_1208 PF17092 Penicillin-binding protein OB-like domain Daes_1209 PF02567 Phenazine biosynthesis-like protein Daes_1211 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Daes_1212 PF01180 Dihydroorotate dehydrogenase Daes_1214 PF01758 Sodium Bile acid symporter family Daes_1217 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Daes_1218 PF00005 ABC transporter Daes_1220 PF00581 Rhodanese-like domain Daes_1222 PF01479 S4 domain Daes_1222 PF01728 FtsJ-like methyltransferase Daes_1223 PF00291 Pyridoxal-phosphate dependent enzyme Daes_1225 PF14535 AMP-binding enzyme C-terminal domain Daes_1225 PF00501 AMP-binding enzyme Daes_1226 PF00772 DnaB-like helicase N terminal domain Daes_1226 PF03796 DnaB-like helicase C terminal domain Daes_1227 PF01281 Ribosomal protein L9, N-terminal domain Daes_1227 PF03948 Ribosomal protein L9, C-terminal domain Daes_1228 PF01084 Ribosomal protein S18 Daes_1229 PF01250 Ribosomal protein S6 Daes_1230 PF01259 SAICAR synthetase Daes_1231 PF00815 Histidinol dehydrogenase Daes_1233 PF02151 UvrB/uvrC motif Daes_1233 PF01541 GIY-YIG catalytic domain Daes_1233 PF08459 UvrC Helix-hairpin-helix N-terminal Daes_1235 PF02441 Flavoprotein Daes_1238 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Daes_1241 PF01584 CheW-like domain Daes_1241 PF00072 Response regulator receiver domain Daes_1243 PF08534 Redoxin Daes_1244 PF01022 Bacterial regulatory protein, arsR family Daes_1247 PF00005 ABC transporter Daes_1248 PF00528 Binding-protein-dependent transport system inner membrane component Daes_1249 PF02562 PhoH-like protein Daes_1250 PF02130 Uncharacterized protein family UPF0054 Daes_1252 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Daes_1252 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Daes_1253 PF00764 Arginosuccinate synthase Daes_1254 PF00206 Lyase Daes_1254 PF14698 Argininosuccinate lyase C-terminal Daes_1255 PF00004 ATPase family associated with various cellular activities (AAA) Daes_1255 PF17862 AAA+ lid domain Daes_1255 PF06480 FtsH Extracellular Daes_1255 PF01434 Peptidase family M41 Daes_1256 PF00809 Pterin binding enzyme Daes_1257 PF02457 DisA bacterial checkpoint controller nucleotide-binding Daes_1259 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Daes_1259 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Daes_1259 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Daes_1259 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Daes_1260 PF00483 Nucleotidyl transferase Daes_1262 PF04851 Type III restriction enzyme, res subunit Daes_1262 PF17764 3′ DNA-binding domain (3′BD) Daes_1262 PF18074 Primosomal protein N C-terminal domain Daes_1262 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Daes_1262 PF00271 Helicase conserved C-terminal domain Daes_1267 PF05690 Thiazole biosynthesis protein ThiG Daes_1268 PF06968 Biotin and Thiamin Synthesis associated domain Daes_1268 PF04055 Radical SAM superfamily Daes_1270 PF02581 Thiamine monophosphate synthase Daes_1271 PF01964 Radical SAM ThiC family Daes_1275 PF00962 Adenosine/AMP deaminase Daes_1278 PF00535 Glycosyl transferase family 2 Daes_1281 PF01569 PAP2 superfamily Daes_1282 PF00534 Glycosyl transferases group 1 Daes_1284 PF00551 Formyl transferase Daes_1284 PF02911 Formyl transferase, C-terminal domain Daes_1284 PF01370 NAD dependent epimerase/dehydratase family Daes_1285 PF04029 2-phosphosulpholactate phosphatase Daes_1286 PF00990 Diguanylate cyclase, GGDEF domain Daes_1286 PF00072 Response regulator receiver domain Daes_1288 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Daes_1289 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Daes_1290 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Daes_1291 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Daes_1292 PF00146 NADH dehydrogenase Daes_1293 PF12838 4Fe-4S dicluster domain Daes_1294 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Daes_1295 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Daes_1296 PF00361 Proton-conducting membrane transporter Daes_1299 PF00361 Proton-conducting membrane transporter Daes_1299 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Daes_1300 PF00361 Proton-conducting membrane transporter Daes_1304 PF01926 50S ribosome-binding GTPase Daes_1304 PF06071 Protein of unknown function (DUF933) Daes_1305 PF01202 Shikimate kinase Daes_1306 PF02386 Cation transport protein Daes_1309 PF01541 GIY-YIG catalytic domain Daes_1311 PF00293 NUDIX domain Daes_1312 PF02219 Methylenetetrahydrofolate reductase Daes_1313 PF01118 Semialdehyde dehydrogenase, NAD binding domain Daes_1313 PF02774 Semialdehyde dehydrogenase, dimerisation domain Daes_1314 PF01063 Amino-transferase class IV Daes_1316 PF00027 Cyclic nucleotide-binding domain Daes_1317 PF04321 RmlD substrate binding domain Daes_1318 PF16363 GDP-mannose 4,6 dehydratase Daes_1319 PF00588 SpoU rRNA Methylase family Daes_1321 PF00005 ABC transporter Daes_1322 PF00528 Binding-protein-dependent transport system inner membrane component Daes_1323 PF12849 PBP superfamily domain Daes_1325 PF00899 ThiF family Daes_1327 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain Daes_1327 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Daes_1328 PF12762 ISXO2-like transposase domain Daes_1331 PF00072 Response regulator receiver domain Daes_1331 PF02954 Bacterial regulatory protein, Fis family Daes_1331 PF00158 Sigma-54 interaction domain Daes_1334 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Daes_1334 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Daes_1334 PF07992 Pyridine nucleotide-disulphide oxidoreductase Daes_1335 PF02508 Rnf-Nqr subunit, membrane protein Daes_1336 PF02508 Rnf-Nqr subunit, membrane protein Daes_1338 PF03116 NQR2, RnfD, RnfE family Daes_1340 PF02085 Class III cytochrome C family Daes_1343 PF07992 Pyridine nucleotide-disulphide oxidoreductase Daes_1344 PF00072 Response regulator receiver domain Daes_1344 PF00512 His Kinase A (phospho-acceptor) domain Daes_1344 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1344 PF09456 RcsC Alpha-Beta-Loop (ABL) Daes_1347 PF00072 Response regulator receiver domain Daes_1351 PF04358 DsrC like protein Daes_1352 PF01197 Ribosomal protein L31 Daes_1353 PF07136 Protein of unknown function (DUF1385) Daes_1354 PF00472 RF-1 domain Daes_1354 PF03462 PCRF domain Daes_1355 PF13847 Methyltransferase domain Daes_1355 PF17827 PrmC N-terminal domain Daes_1356 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Daes_1361 PF00072 Response regulator receiver domain Daes_1362 PF04539 Sigma-70 region 3 Daes_1362 PF04545 Sigma-70, region 4 Daes_1362 PF04542 Sigma-70 region 2 Daes_1363 PF10609 NUBPL iron-transfer P-loop NTPase Daes_1364 PF00448 SRP54-type protein, GTPase domain Daes_1365 PF00771 FHIPEP family Daes_1366 PF01312 FlhB HrpN YscU SpaS Family Daes_1367 PF01311 Bacterial export proteins, family 1 Daes_1368 PF01551 Peptidase family M23 Daes_1368 PF01476 LysM domain Daes_1368 PF08525 Opacity-associated protein A N-terminal motif Daes_1369 PF11734 TilS substrate C-terminal domain Daes_1369 PF09179 TilS substrate binding domain Daes_1369 PF01171 PP-loop family Daes_1371 PF01192 RNA polymerase Rpb6 Daes_1372 PF01556 DnaJ C terminal domain Daes_1372 PF00226 DnaJ domain Daes_1372 PF00684 DnaJ central domain Daes_1373 PF01967 MoaC family Daes_1374 PF00977 Histidine biosynthesis protein Daes_1375 PF00117 Glutamine amidotransferase class-I Daes_1376 PF00226 DnaJ domain Daes_1376 PF01556 DnaJ C terminal domain Daes_1376 PF00684 DnaJ central domain Daes_1379 PF00557 Metallopeptidase family M24 Daes_1379 PF01321 Creatinase/Prolidase N-terminal domain Daes_1381 PF00465 Iron-containing alcohol dehydrogenase Daes_1382 PF02683 Cytochrome C biogenesis protein transmembrane region Daes_1382 PF11412 Disulphide bond corrector protein DsbC Daes_1384 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Daes_1384 PF10371 Domain of unknown function Daes_1384 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Daes_1384 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Daes_1384 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Daes_1388 PF00753 Metallo-beta-lactamase superfamily Daes_1388 PF00581 Rhodanese-like domain Daes_1392 PF00005 ABC transporter Daes_1393 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Daes_1395 PF07992 Pyridine nucleotide-disulphide oxidoreductase Daes_1395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Daes_1396 PF01336 OB-fold nucleic acid binding domain Daes_1396 PF00152 tRNA synthetases class II (D, K and N) Daes_1397 PF02687 FtsX-like permease family Daes_1397 PF12704 MacB-like periplasmic core domain Daes_1398 PF00005 ABC transporter Daes_1399 PF01103 Surface antigen Daes_1399 PF07244 Surface antigen variable number repeat Daes_1401 PF00132 Bacterial transferase hexapeptide (six repeats) Daes_1401 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Daes_1402 PF07977 FabA-like domain Daes_1403 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Daes_1403 PF00132 Bacterial transferase hexapeptide (six repeats) Daes_1404 PF06230 LpxI C-terminal domain Daes_1404 PF17930 LpxI N-terminal domain Daes_1407 PF03631 Virulence factor BrkB Daes_1409 PF01702 Queuine tRNA-ribosyltransferase Daes_1410 PF00730 HhH-GPD superfamily base excision DNA repair protein Daes_1410 PF00633 Helix-hairpin-helix motif Daes_1411 PF03091 CutA1 divalent ion tolerance protein Daes_1412 PF00294 pfkB family carbohydrate kinase Daes_1414 PF01747 ATP-sulfurylase Daes_1414 PF14306 PUA-like domain Daes_1415 PF04055 Radical SAM superfamily Daes_1415 PF00919 Uncharacterized protein family UPF0004 Daes_1416 PF02577 Bifunctional nuclease Daes_1418 PF01618 MotA/TolQ/ExbB proton channel family Daes_1419 PF02472 Biopolymer transport protein ExbD/TolR Daes_1421 PF07676 WD40-like Beta Propeller Repeat Daes_1422 PF00691 OmpA family Daes_1423 PF04608 Phosphatidylglycerophosphatase A Daes_1425 PF02545 Maf-like protein Daes_1427 PF01618 MotA/TolQ/ExbB proton channel family Daes_1428 PF02685 Glucokinase Daes_1429 PF00156 Phosphoribosyl transferase domain Daes_1430 PF02608 ABC transporter substrate-binding protein PnrA-like Daes_1433 PF00005 ABC transporter Daes_1434 PF13286 Phosphohydrolase-associated domain Daes_1434 PF01966 HD domain Daes_1438 PF01676 Metalloenzyme superfamily Daes_1438 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Daes_1439 PF00742 Homoserine dehydrogenase Daes_1439 PF03447 Homoserine dehydrogenase, NAD binding domain Daes_1439 PF01842 ACT domain Daes_1440 PF00155 Aminotransferase class I and II Daes_1441 PF01063 Amino-transferase class IV Daes_1442 PF12169 DNA polymerase III subunits gamma and tau domain III Daes_1443 PF02575 YbaB/EbfC DNA-binding family Daes_1444 PF02132 RecR protein Daes_1444 PF13662 Toprim domain Daes_1445 PF14490 Helix-hairpin-helix containing domain Daes_1445 PF13538 UvrD-like helicase C-terminal domain Daes_1445 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Daes_1446 PF00210 Ferritin-like domain Daes_1448 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Daes_1449 PF12848 ABC transporter Daes_1449 PF00005 ABC transporter Daes_1451 PF17848 Acetyl-coA carboxylase zinc finger domain Daes_1451 PF01039 Carboxyl transferase domain Daes_1452 PF00289 Biotin carboxylase, N-terminal domain Daes_1452 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Daes_1452 PF02785 Biotin carboxylase C-terminal domain Daes_1453 PF18267 Rubredoxin NAD+ reductase C-terminal domain Daes_1453 PF04324 BFD-like [2Fe-2S] binding domain Daes_1453 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Daes_1453 PF07992 Pyridine nucleotide-disulphide oxidoreductase Daes_1454 PF00211 Adenylate and Guanylate cyclase catalytic domain Daes_1456 PF00664 ABC transporter transmembrane region Daes_1456 PF00005 ABC transporter Daes_1456 PF03412 Peptidase C39 family Daes_1457 PF00529 HlyD membrane-fusion protein of T1SS Daes_1457 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Daes_1461 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_1461 PF02203 Tar ligand binding domain homologue Daes_1461 PF00672 HAMP domain Daes_1463 PF12762 ISXO2-like transposase domain Daes_1465 PF01527 Transposase Daes_1466 PF12762 ISXO2-like transposase domain Daes_1467 PF14437 MafB19-like deaminase Daes_1469 PF06418 CTP synthase N-terminus Daes_1469 PF00117 Glutamine amidotransferase class-I Daes_1470 PF00793 DAHP synthetase I family Daes_1474 PF12399 Branched-chain amino acid ATP-binding cassette transporter Daes_1474 PF00005 ABC transporter Daes_1475 PF00309 Sigma-54 factor, Activator interacting domain (AID) Daes_1475 PF04963 Sigma-54 factor, core binding domain Daes_1475 PF04552 Sigma-54, DNA binding domain Daes_1476 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Daes_1476 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Daes_1477 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Daes_1478 PF03668 P-loop ATPase protein family Daes_1480 PF03830 PTS system sorbose subfamily IIB component Daes_1482 PF01368 DHH family Daes_1482 PF02833 DHHA2 domain Daes_1483 PF00701 Dihydrodipicolinate synthetase family Daes_1485 PF00216 Bacterial DNA-binding protein Daes_1486 PF10609 NUBPL iron-transfer P-loop NTPase Daes_1487 PF00990 Diguanylate cyclase, GGDEF domain Daes_1487 PF00072 Response regulator receiver domain Daes_1488 PF00472 RF-1 domain Daes_1488 PF03462 PCRF domain Daes_1489 PF00795 Carbon-nitrogen hydrolase Daes_1490 PF03471 Transporter associated domain Daes_1490 PF00571 CBS domain Daes_1491 PF13932 GidA associated domain Daes_1491 PF01134 Glucose inhibited division protein A Daes_1492 PF01546 Peptidase family M20/M25/M40 Daes_1492 PF07687 Peptidase dimerisation domain Daes_1494 PF01979 Amidohydrolase family Daes_1495 PF01048 Phosphorylase superfamily Daes_1496 PF00156 Phosphoribosyl transferase domain Daes_1497 PF00398 Ribosomal RNA adenine dimethylase Daes_1498 PF00216 Bacterial DNA-binding protein Daes_1500 PF01165 Ribosomal protein S21 Daes_1501 PF09424 Yqey-like protein Daes_1502 PF00488 MutS domain V Daes_1502 PF01713 Smr domain Daes_1503 PF08275 DNA primase catalytic core, N-terminal domain Daes_1503 PF10410 DnaB-helicase binding domain of primase Daes_1503 PF01807 CHC2 zinc finger Daes_1504 PF04539 Sigma-70 region 3 Daes_1504 PF00140 Sigma-70 factor, region 1.2 Daes_1504 PF04546 Sigma-70, non-essential region Daes_1504 PF04542 Sigma-70 region 2 Daes_1504 PF03979 Sigma-70 factor, region 1.1 Daes_1504 PF04545 Sigma-70, region 4 Daes_1505 PF03186 CobD/Cbib protein Daes_1507 PF03807 NADP oxidoreductase coenzyme F420-dependent Daes_1507 PF14748 Pyrroline-5-carboxylate reductase dimerisation Daes_1508 PF00334 Nucleoside diphosphate kinase Daes_1509 PF00005 ABC transporter Daes_1510 PF02653 Branched-chain amino acid transport system / permease component Daes_1512 PF02154 Flagellar motor switch protein FliM Daes_1512 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Daes_1514 PF13180 PDZ domain Daes_1514 PF03572 Peptidase family S41 Daes_1519 PF00202 Aminotransferase class-III Daes_1520 PF00692 dUTPase Daes_1521 PF00474 Sodium:solute symporter family Daes_1524 PF13187 4Fe-4S dicluster domain Daes_1524 PF01645 Conserved region in glutamate synthase Daes_1525 PF13247 4Fe-4S dicluster domain Daes_1525 PF12800 4Fe-4S binding domain Daes_1526 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Daes_1526 PF07992 Pyridine nucleotide-disulphide oxidoreductase Daes_1526 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Daes_1526 PF18267 Rubredoxin NAD+ reductase C-terminal domain Daes_1526 PF04324 BFD-like [2Fe-2S] binding domain Daes_1527 PF00310 Glutamine amidotransferases class-II Daes_1529 PF02699 Preprotein translocase subunit Daes_1530 PF02355 Protein export membrane protein Daes_1530 PF07549 SecD/SecF GG Motif Daes_1531 PF02355 Protein export membrane protein Daes_1531 PF07549 SecD/SecF GG Motif Daes_1533 PF01171 PP-loop family Daes_1535 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Daes_1535 PF01488 Shikimate / quinate 5-dehydrogenase Daes_1535 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Daes_1536 PF01578 Cytochrome C assembly protein Daes_1537 PF14824 Sirohaem biosynthesis protein central Daes_1537 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Daes_1537 PF10414 Sirohaem synthase dimerisation region Daes_1539 PF12996 DUF based on E. rectale Gene description (DUF3880) Daes_1540 PF00004 ATPase family associated with various cellular activities (AAA) Daes_1540 PF16193 AAA C-terminal domain Daes_1540 PF12002 MgsA AAA+ ATPase C terminal Daes_1542 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Daes_1542 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Daes_1544 PF05188 MutS domain II Daes_1544 PF05192 MutS domain III Daes_1544 PF05190 MutS family domain IV Daes_1544 PF00488 MutS domain V Daes_1544 PF01624 MutS domain I Daes_1545 PF18073 Rubredoxin metal binding domain Daes_1549 PF01743 Poly A polymerase head domain Daes_1549 PF12627 Probable RNA and SrmB- binding site of polymerase A Daes_1549 PF13735 tRNA nucleotidyltransferase domain 2 putative Daes_1550 PF00589 Phage integrase family Daes_1550 PF02899 Phage integrase, N-terminal SAM-like domain Daes_1551 PF00155 Aminotransferase class I and II Daes_1555 PF00484 Carbonic anhydrase Daes_1556 PF03840 Preprotein translocase SecG subunit Daes_1557 PF00121 Triosephosphate isomerase Daes_1558 PF00162 Phosphoglycerate kinase Daes_1559 PF00583 Acetyltransferase (GNAT) family Daes_1561 PF00459 Inositol monophosphatase family Daes_1564 PF08669 Glycine cleavage T-protein C-terminal barrel domain Daes_1564 PF01571 Aminomethyltransferase folate-binding domain Daes_1567 PF01479 S4 domain Daes_1567 PF00849 RNA pseudouridylate synthase Daes_1569 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Daes_1569 PF01580 FtsK/SpoIIIE family Daes_1569 PF09397 Ftsk gamma domain Daes_1569 PF17854 FtsK alpha domain Daes_1570 PF08207 Elongation factor P (EF-P) KOW-like domain Daes_1570 PF09285 Elongation factor P, C-terminal Daes_1570 PF01132 Elongation factor P (EF-P) OB domain Daes_1571 PF01220 Dehydroquinase class II Daes_1572 PF01926 50S ribosome-binding GTPase Daes_1576 PF02673 Bacitracin resistance protein BacA Daes_1579 PF02796 Helix-turn-helix domain of resolvase Daes_1579 PF00239 Resolvase, N terminal domain Daes_1582 PF01726 LexA DNA binding domain Daes_1582 PF00717 Peptidase S24-like Daes_1592 PF13538 UvrD-like helicase C-terminal domain Daes_1592 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Daes_1592 PF14490 Helix-hairpin-helix containing domain Daes_1593 PF01807 CHC2 zinc finger Daes_1593 PF13662 Toprim domain Daes_1593 PF08278 DNA primase DnaG DnaB-binding Daes_1593 PF08275 DNA primase catalytic core, N-terminal domain Daes_1593 PF10410 DnaB-helicase binding domain of primase Daes_1597 PF02899 Phage integrase, N-terminal SAM-like domain Daes_1597 PF00589 Phage integrase family Daes_1607 PF00152 tRNA synthetases class II (D, K and N) Daes_1607 PF01336 OB-fold nucleic acid binding domain Daes_1630 PF01471 Putative peptidoglycan binding domain Daes_1630 PF08291 Peptidase M15 Daes_1657 PF00176 SNF2 family N-terminal domain Daes_1657 PF00271 Helicase conserved C-terminal domain Daes_1660 PF05552 Conserved TM helix Daes_1660 PF00924 Mechanosensitive ion channel Daes_1661 PF01435 Peptidase family M48 Daes_1662 PF01699 Sodium/calcium exchanger protein Daes_1664 PF00534 Glycosyl transferases group 1 Daes_1664 PF13439 Glycosyltransferase Family 4 Daes_1668 PF12762 ISXO2-like transposase domain Daes_1670 PF13458 Periplasmic binding protein Daes_1671 PF01627 Hpt domain Daes_1671 PF00072 Response regulator receiver domain Daes_1671 PF18415 Histidine kinase receptor ArcB trans-membrane domain Daes_1671 PF00512 His Kinase A (phospho-acceptor) domain Daes_1671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1671 PF00989 PAS fold Daes_1672 PF00691 OmpA family Daes_1672 PF13677 Membrane MotB of proton-channel complex MotA/MotB Daes_1673 PF00691 OmpA family Daes_1673 PF13677 Membrane MotB of proton-channel complex MotA/MotB Daes_1674 PF01618 MotA/TolQ/ExbB proton channel family Daes_1678 PF02525 Flavodoxin-like fold Daes_1679 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Daes_1679 PF02896 PEP-utilising enzyme, TIM barrel domain Daes_1679 PF00391 PEP-utilising enzyme, mobile domain Daes_1680 PF02785 Biotin carboxylase C-terminal domain Daes_1680 PF00289 Biotin carboxylase, N-terminal domain Daes_1680 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Daes_1682 PF12627 Probable RNA and SrmB- binding site of polymerase A Daes_1682 PF01743 Poly A polymerase head domain Daes_1682 PF01966 HD domain Daes_1684 PF00072 Response regulator receiver domain Daes_1684 PF00672 HAMP domain Daes_1684 PF01627 Hpt domain Daes_1684 PF00512 His Kinase A (phospho-acceptor) domain Daes_1684 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Daes_1684 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1686 PF00549 CoA-ligase Daes_1686 PF02629 CoA binding domain Daes_1687 PF00534 Glycosyl transferases group 1 Daes_1687 PF13439 Glycosyltransferase Family 4 Daes_1689 PF00440 Bacterial regulatory proteins, tetR family Daes_1689 PF17932 Tetracyclin repressor-like, C-terminal domain Daes_1690 PF01458 Uncharacterized protein family (UPF0051) Daes_1691 PF00005 ABC transporter Daes_1693 PF01584 CheW-like domain Daes_1695 PF01842 ACT domain Daes_1696 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Daes_1696 PF00205 Thiamine pyrophosphate enzyme, central domain Daes_1696 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Daes_1697 PF02525 Flavodoxin-like fold Daes_1699 PF05362 Lon protease (S16) C-terminal proteolytic domain Daes_1699 PF13654 AAA domain Daes_1702 PF00563 EAL domain Daes_1702 PF03707 Bacterial signalling protein N terminal repeat Daes_1702 PF00990 Diguanylate cyclase, GGDEF domain Daes_1704 PF01106 NifU-like domain Daes_1704 PF01592 NifU-like N terminal domain Daes_1704 PF04324 BFD-like [2Fe-2S] binding domain Daes_1706 PF00291 Pyridoxal-phosphate dependent enzyme Daes_1707 PF00132 Bacterial transferase hexapeptide (six repeats) Daes_1709 PF06827 Zinc finger found in FPG and IleRS Daes_1709 PF00133 tRNA synthetases class I (I, L, M and V) Daes_1709 PF08264 Anticodon-binding domain of tRNA Daes_1710 PF01252 Signal peptidase (SPase) II Daes_1716 PF00571 CBS domain Daes_1716 PF01769 Divalent cation transporter Daes_1716 PF03448 MgtE intracellular N domain Daes_1717 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Daes_1717 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Daes_1718 PF02445 Quinolinate synthetase A protein Daes_1719 PF00890 FAD binding domain Daes_1719 PF02910 Fumarate reductase flavoprotein C-term Daes_1720 PF02386 Cation transport protein Daes_1721 PF02080 TrkA-C domain Daes_1721 PF02254 TrkA-N domain Daes_1722 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Daes_1722 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Daes_1723 PF01588 Putative tRNA binding domain Daes_1723 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Daes_1723 PF03484 tRNA synthetase B5 domain Daes_1723 PF03483 B3/4 domain Daes_1723 PF03147 Ferredoxin-fold anticodon binding domain Daes_1726 PF13545 Crp-like helix-turn-helix domain Daes_1726 PF00027 Cyclic nucleotide-binding domain Daes_1727 PF01649 Ribosomal protein S20 Daes_1728 PF02092 Glycyl-tRNA synthetase beta subunit Daes_1728 PF05746 DALR anticodon binding domain Daes_1729 PF02091 Glycyl-tRNA synthetase alpha subunit Daes_1730 PF02565 Recombination protein O C terminal Daes_1730 PF11967 Recombination protein O N terminal Daes_1732 PF09312 SurA N-terminal domain Daes_1732 PF00639 PPIC-type PPIASE domain Daes_1734 PF00271 Helicase conserved C-terminal domain Daes_1734 PF03461 TRCF domain Daes_1734 PF00270 DEAD/DEAH box helicase Daes_1734 PF02559 CarD-like/TRCF domain Daes_1734 PF17757 UvrB interaction domain Daes_1735 PF01584 CheW-like domain Daes_1737 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Daes_1737 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Daes_1737 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Daes_1738 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Daes_1739 PF01648 4'-phosphopantetheinyl transferase superfamily Daes_1740 PF01256 Carbohydrate kinase Daes_1740 PF03853 YjeF-related protein N-terminus Daes_1741 PF00478 IMP dehydrogenase / GMP reductase domain Daes_1741 PF00571 CBS domain Daes_1743 PF01842 ACT domain Daes_1743 PF13840 ACT domain Daes_1743 PF00696 Amino acid kinase family Daes_1744 PF08502 LeuA allosteric (dimerisation) domain Daes_1744 PF00682 HMGL-like Daes_1745 PF08668 HDOD domain Daes_1745 PF00563 EAL domain Daes_1746 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Daes_1746 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Daes_1747 PF01975 Survival protein SurE Daes_1748 PF01966 HD domain Daes_1749 PF02223 Thymidylate kinase Daes_1752 PF00497 Bacterial extracellular solute-binding proteins, family 3 Daes_1753 PF00528 Binding-protein-dependent transport system inner membrane component Daes_1756 PF13180 PDZ domain Daes_1756 PF02163 Peptidase family M50 Daes_1757 PF01053 Cys/Met metabolism PLP-dependent enzyme Daes_1758 PF01134 Glucose inhibited division protein A Daes_1759 PF00005 ABC transporter Daes_1759 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Daes_1760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Daes_1760 PF00005 ABC transporter Daes_1763 PF00005 ABC transporter Daes_1764 PF01554 MatE Daes_1768 PF00580 UvrD/REP helicase N-terminal domain Daes_1768 PF13361 UvrD-like helicase C-terminal domain Daes_1769 PF02769 AIR synthase related protein, C-terminal domain Daes_1769 PF00586 AIR synthase related protein, N-terminal domain Daes_1770 PF18389 TrmO C-terminal domain Daes_1770 PF01980 tRNA-methyltransferase O Daes_1771 PF08386 TAP-like protein Daes_1771 PF00561 alpha/beta hydrolase fold Daes_1772 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Daes_1773 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Daes_1773 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Daes_1774 PF10369 Small subunit of acetolactate synthase Daes_1774 PF01842 ACT domain Daes_1775 PF00205 Thiamine pyrophosphate enzyme, central domain Daes_1775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Daes_1775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Daes_1777 PF02594 Uncharacterised ACR, YggU family COG1872 Daes_1783 PF02416 mttA/Hcf106 family Daes_1788 PF01467 Cytidylyltransferase-like Daes_1790 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Daes_1790 PF00753 Metallo-beta-lactamase superfamily Daes_1790 PF10996 Beta-Casp domain Daes_1791 PF03641 Possible lysine decarboxylase Daes_1792 PF00892 EamA-like transporter family Daes_1793 PF12729 Four helix bundle sensory module for signal transduction Daes_1793 PF00672 HAMP domain Daes_1793 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_1795 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Daes_1795 PF01676 Metalloenzyme superfamily Daes_1798 PF00501 AMP-binding enzyme Daes_1798 PF14535 AMP-binding enzyme C-terminal domain Daes_1800 PF01139 tRNA-splicing ligase RtcB Daes_1803 PF01554 MatE Daes_1804 PF13396 Phospholipase_D-nuclease N-terminal Daes_1804 PF13091 PLD-like domain Daes_1805 PF12762 ISXO2-like transposase domain Daes_1806 PF01113 Dihydrodipicolinate reductase, N-terminus Daes_1806 PF05173 Dihydrodipicolinate reductase, C-terminus Daes_1807 PF01653 NAD-dependent DNA ligase adenylation domain Daes_1807 PF03120 NAD-dependent DNA ligase OB-fold domain Daes_1807 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Daes_1807 PF12826 Helix-hairpin-helix motif Daes_1807 PF00533 BRCA1 C Terminus (BRCT) domain Daes_1808 PF04851 Type III restriction enzyme, res subunit Daes_1808 PF00271 Helicase conserved C-terminal domain Daes_1808 PF02151 UvrB/uvrC motif Daes_1808 PF12344 Ultra-violet resistance protein B Daes_1808 PF17757 UvrB interaction domain Daes_1810 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Daes_1811 PF07724 AAA domain (Cdc48 subfamily) Daes_1811 PF00004 ATPase family associated with various cellular activities (AAA) Daes_1811 PF02861 Clp amino terminal domain, pathogenicity island component Daes_1811 PF10431 C-terminal, D2-small domain, of ClpB protein Daes_1811 PF17871 AAA lid domain Daes_1812 PF02617 ATP-dependent Clp protease adaptor protein ClpS Daes_1814 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Daes_1815 PF02641 Uncharacterized ACR, COG1993 Daes_1816 PF00072 Response regulator receiver domain Daes_1816 PF01339 CheB methylesterase Daes_1817 PF02895 Signal transducing histidine kinase, homodimeric domain Daes_1817 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1817 PF01584 CheW-like domain Daes_1817 PF01627 Hpt domain Daes_1818 PF00672 HAMP domain Daes_1818 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_1818 PF13426 PAS domain Daes_1820 PF00679 Elongation factor G C-terminus Daes_1820 PF00009 Elongation factor Tu GTP binding domain Daes_1820 PF03764 Elongation factor G, domain IV Daes_1820 PF14492 Elongation Factor G, domain II Daes_1820 PF03144 Elongation factor Tu domain 2 Daes_1822 PF13525 Outer membrane lipoprotein Daes_1823 PF07992 Pyridine nucleotide-disulphide oxidoreductase Daes_1824 PF00085 Thioredoxin Daes_1825 PF00814 Glycoprotease family Daes_1826 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Daes_1831 PF01066 CDP-alcohol phosphatidyltransferase Daes_1832 PF10609 NUBPL iron-transfer P-loop NTPase Daes_1838 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Daes_1838 PF00591 Glycosyl transferase family, a/b domain Daes_1838 PF02885 Glycosyl transferase family, helical bundle domain Daes_1839 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Daes_1840 PF00004 ATPase family associated with various cellular activities (AAA) Daes_1840 PF05362 Lon protease (S16) C-terminal proteolytic domain Daes_1840 PF02190 ATP-dependent protease La (LON) substrate-binding domain Daes_1841 PF07724 AAA domain (Cdc48 subfamily) Daes_1841 PF10431 C-terminal, D2-small domain, of ClpB protein Daes_1841 PF06689 ClpX C4-type zinc finger Daes_1842 PF00574 Clp protease Daes_1843 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Daes_1843 PF05698 Bacterial trigger factor protein (TF) C-terminus Daes_1843 PF05697 Bacterial trigger factor protein (TF) Daes_1844 PF08543 Phosphomethylpyrimidine kinase Daes_1848 PF05443 ROS/MUCR transcriptional regulator protein Daes_1850 PF00152 tRNA synthetases class II (D, K and N) Daes_1850 PF01336 OB-fold nucleic acid binding domain Daes_1851 PF02881 SRP54-type protein, helical bundle domain Daes_1851 PF00448 SRP54-type protein, GTPase domain Daes_1852 PF00575 S1 RNA binding domain Daes_1853 PF00849 RNA pseudouridylate synthase Daes_1855 PF13361 UvrD-like helicase C-terminal domain Daes_1855 PF00580 UvrD/REP helicase N-terminal domain Daes_1855 PF12705 PD-(D/E)XK nuclease superfamily Daes_1858 PF01266 FAD dependent oxidoreductase Daes_1859 PF03060 Nitronate monooxygenase Daes_1860 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Daes_1861 PF00589 Phage integrase family Daes_1861 PF02899 Phage integrase, N-terminal SAM-like domain Daes_1863 PF12072 Domain of unknown function (DUF3552) Daes_1863 PF01966 HD domain Daes_1863 PF00013 KH domain Daes_1865 PF02481 DNA recombination-mediator protein A Daes_1865 PF17782 DprA winged helix domain Daes_1871 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1871 PF01584 CheW-like domain Daes_1871 PF02895 Signal transducing histidine kinase, homodimeric domain Daes_1871 PF07194 P2 response regulator binding domain Daes_1871 PF01627 Hpt domain Daes_1873 PF01739 CheR methyltransferase, SAM binding domain Daes_1873 PF03705 CheR methyltransferase, all-alpha domain Daes_1875 PF00072 Response regulator receiver domain Daes_1875 PF01339 CheB methylesterase Daes_1878 PF02384 N-6 DNA Methylase Daes_1879 PF07669 Eco57I restriction-modification methylase Daes_1882 PF01527 Transposase Daes_1883 PF03062 MBOAT, membrane-bound O-acyltransferase family Daes_1885 PF13229 Right handed beta helix region Daes_1885 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Daes_1885 PF12708 Pectate lyase superfamily protein Daes_1886 PF00535 Glycosyl transferase family 2 Daes_1889 PF07664 Ferrous iron transport protein B C terminus Daes_1889 PF02421 Ferrous iron transport protein B Daes_1889 PF07670 Nucleoside recognition Daes_1889 PF17910 FeoB cytosolic helical domain Daes_1889 PF04023 FeoA domain Daes_1890 PF04023 FeoA domain Daes_1892 PF01475 Ferric uptake regulator family Daes_1894 PF01475 Ferric uptake regulator family Daes_1896 PF09967 VWA-like domain (DUF2201) Daes_1896 PF13203 Putative metallopeptidase domain Daes_1898 PF09345 Domain of unknown function (DUF1987) Daes_1901 PF00990 Diguanylate cyclase, GGDEF domain Daes_1901 PF00072 Response regulator receiver domain Daes_1903 PF03315 Serine dehydratase beta chain Daes_1903 PF03313 Serine dehydratase alpha chain Daes_1904 PF00005 ABC transporter Daes_1905 PF00497 Bacterial extracellular solute-binding proteins, family 3 Daes_1906 PF00528 Binding-protein-dependent transport system inner membrane component Daes_1908 PF02085 Class III cytochrome C family Daes_1909 PF00180 Isocitrate/isopropylmalate dehydrogenase Daes_1910 PF00694 Aconitase C-terminal domain Daes_1911 PF00330 Aconitase family (aconitate hydratase) Daes_1912 PF00682 HMGL-like Daes_1912 PF08502 LeuA allosteric (dimerisation) domain Daes_1913 PF01066 CDP-alcohol phosphatidyltransferase Daes_1914 PF02666 Phosphatidylserine decarboxylase Daes_1917 PF01258 Prokaryotic dksA/traR C4-type zinc finger Daes_1920 PF00633 Helix-hairpin-helix motif Daes_1920 PF14815 NUDIX domain Daes_1920 PF00730 HhH-GPD superfamily base excision DNA repair protein Daes_1921 PF00300 Histidine phosphatase superfamily (branch 1) Daes_1923 PF00535 Glycosyl transferase family 2 Daes_1928 PF00994 Probable molybdopterin binding domain Daes_1930 PF00483 Nucleotidyl transferase Daes_1939 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB Daes_1941 PF01527 Transposase Daes_1944 PF02001 Protein of unknown function DUF134 Daes_1953 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Daes_1953 PF07992 Pyridine nucleotide-disulphide oxidoreductase Daes_1954 PF01645 Conserved region in glutamate synthase Daes_1954 PF13187 4Fe-4S dicluster domain Daes_1957 PF02082 Transcriptional regulator Daes_1960 PF01594 AI-2E family transporter Daes_1961 PF00497 Bacterial extracellular solute-binding proteins, family 3 Daes_1962 PF00528 Binding-protein-dependent transport system inner membrane component Daes_1963 PF00005 ABC transporter Daes_1972 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Daes_1972 PF02780 Transketolase, C-terminal domain Daes_1972 PF02779 Transketolase, pyrimidine binding domain Daes_1973 PF00456 Transketolase, thiamine diphosphate binding domain Daes_1974 PF01370 NAD dependent epimerase/dehydratase family Daes_1975 PF13580 SIS domain Daes_1977 PF01467 Cytidylyltransferase-like Daes_1977 PF00294 pfkB family carbohydrate kinase Daes_1980 PF00535 Glycosyl transferase family 2 Daes_1983 PF16363 GDP-mannose 4,6 dehydratase Daes_1984 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Daes_1985 PF08666 SAF domain Daes_1985 PF03102 NeuB family Daes_1986 PF02350 UDP-N-acetylglucosamine 2-epimerase Daes_1987 PF00483 Nucleotidyl transferase Daes_1988 PF01113 Dihydrodipicolinate reductase, N-terminus Daes_1988 PF05173 Dihydrodipicolinate reductase, C-terminus Daes_1989 PF02348 Cytidylyltransferase Daes_1989 PF13472 GDSL-like Lipase/Acylhydrolase family Daes_1991 PF00977 Histidine biosynthesis protein Daes_1992 PF00117 Glutamine amidotransferase class-I Daes_1996 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1996 PF00512 His Kinase A (phospho-acceptor) domain Daes_1996 PF01590 GAF domain Daes_1996 PF00360 Phytochrome region Daes_1996 PF08446 PAS fold Daes_1997 PF00072 Response regulator receiver domain Daes_1998 PF00512 His Kinase A (phospho-acceptor) domain Daes_1998 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_1998 PF00360 Phytochrome region Daes_1998 PF01590 GAF domain Daes_1998 PF08446 PAS fold Daes_2005 PF02421 Ferrous iron transport protein B Daes_2005 PF07670 Nucleoside recognition Daes_2005 PF17910 FeoB cytosolic helical domain Daes_2005 PF07664 Ferrous iron transport protein B C terminus Daes_2005 PF04023 FeoA domain Daes_2006 PF16360 GTP-binding GTPase Middle Region Daes_2006 PF01926 50S ribosome-binding GTPase Daes_2006 PF13167 GTP-binding GTPase N-terminal Daes_2007 PF01808 AICARFT/IMPCHase bienzyme Daes_2007 PF02142 MGS-like domain Daes_2009 PF00460 Flagella basal body rod protein Daes_2010 PF00460 Flagella basal body rod protein Daes_2010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Daes_2011 PF02049 Flagellar hook-basal body complex protein FliE Daes_2012 PF08345 Flagellar M-ring protein C-terminal Daes_2012 PF01514 Secretory protein of YscJ/FliF family Daes_2013 PF01706 FliG C-terminal domain Daes_2013 PF14841 FliG middle domain Daes_2013 PF14842 FliG N-terminal domain Daes_2015 PF18269 T3SS EscN ATPase C-terminal domain Daes_2015 PF02874 ATP synthase alpha/beta family, beta-barrel domain Daes_2015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Daes_2016 PF01451 Low molecular weight phosphotyrosine protein phosphatase Daes_2018 PF13411 MerR HTH family regulatory protein Daes_2019 PF01588 Putative tRNA binding domain Daes_2019 PF03147 Ferredoxin-fold anticodon binding domain Daes_2019 PF03484 tRNA synthetase B5 domain Daes_2019 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Daes_2019 PF03483 B3/4 domain Daes_2020 PF01409 tRNA synthetases class II core domain (F) Daes_2020 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Daes_2021 PF00453 Ribosomal protein L20 Daes_2022 PF01632 Ribosomal protein L35 Daes_2023 PF00707 Translation initiation factor IF-3, C-terminal domain Daes_2023 PF05198 Translation initiation factor IF-3, N-terminal domain Daes_2024 PF03129 Anticodon binding domain Daes_2024 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Daes_2024 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Daes_2030 PF13237 4Fe-4S dicluster domain Daes_2032 PF12727 PBP superfamily domain Daes_2033 PF00857 Isochorismatase family Daes_2034 PF13282 Domain of unknown function (DUF4070) Daes_2034 PF02310 B12 binding domain Daes_2034 PF04055 Radical SAM superfamily Daes_2035 PF01588 Putative tRNA binding domain Daes_2035 PF09334 tRNA synthetases class I (M) Daes_2037 PF01042 Endoribonuclease L-PSP Daes_2038 PF01791 DeoC/LacD family aldolase Daes_2040 PF01464 Transglycosylase SLT domain Daes_2040 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Daes_2044 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Daes_2047 PF00474 Sodium:solute symporter family Daes_2052 PF00528 Binding-protein-dependent transport system inner membrane component Daes_2053 PF12911 N-terminal TM domain of oligopeptide transport permease C Daes_2053 PF00528 Binding-protein-dependent transport system inner membrane component Daes_2054 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Daes_2054 PF00005 ABC transporter Daes_2055 PF00005 ABC transporter Daes_2055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Daes_2057 PF01527 Transposase Daes_2059 PF00486 Transcriptional regulatory protein, C terminal Daes_2059 PF00072 Response regulator receiver domain Daes_2060 PF07992 Pyridine nucleotide-disulphide oxidoreductase Daes_2060 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Daes_2061 PF00155 Aminotransferase class I and II Daes_2063 PF05683 Fumarase C-terminus Daes_2063 PF05681 Fumarate hydratase (Fumerase) Daes_2064 PF05681 Fumarate hydratase (Fumerase) Daes_2065 PF13085 2Fe-2S iron-sulfur cluster binding domain Daes_2065 PF13183 4Fe-4S dicluster domain Daes_2066 PF02910 Fumarate reductase flavoprotein C-term Daes_2066 PF00890 FAD binding domain Daes_2067 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Daes_2068 PF00675 Insulinase (Peptidase family M16) Daes_2068 PF05193 Peptidase M16 inactive domain Daes_2070 PF01264 Chorismate synthase Daes_2071 PF02080 TrkA-C domain Daes_2071 PF02254 TrkA-N domain Daes_2072 PF02824 TGS domain Daes_2072 PF13291 ACT domain Daes_2072 PF04607 Region found in RelA / SpoT proteins Daes_2073 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Daes_2074 PF12419 SNF2 Helicase protein Daes_2074 PF00271 Helicase conserved C-terminal domain Daes_2074 PF00176 SNF2 family N-terminal domain Daes_2077 PF00436 Single-strand binding protein family Daes_2080 PF01039 Carboxyl transferase domain Daes_2080 PF17848 Acetyl-coA carboxylase zinc finger domain Daes_2081 PF02785 Biotin carboxylase C-terminal domain Daes_2081 PF00289 Biotin carboxylase, N-terminal domain Daes_2081 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Daes_2083 PF00691 OmpA family Daes_2083 PF13677 Membrane MotB of proton-channel complex MotA/MotB Daes_2084 PF01618 MotA/TolQ/ExbB proton channel family Daes_2085 PF01048 Phosphorylase superfamily Daes_2088 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Daes_2089 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Daes_2089 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Daes_2089 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Daes_2091 PF02570 Precorrin-8X methylmutase Daes_2092 PF01791 DeoC/LacD family aldolase Daes_2093 PF00528 Binding-protein-dependent transport system inner membrane component Daes_2094 PF00528 Binding-protein-dependent transport system inner membrane component Daes_2095 PF00497 Bacterial extracellular solute-binding proteins, family 3 Daes_2096 PF00005 ABC transporter Daes_2097 PF13533 Biotin-lipoyl like Daes_2098 PF00873 AcrB/AcrD/AcrF family Daes_2099 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Daes_2100 PF02535 ZIP Zinc transporter Daes_2101 PF07969 Amidohydrolase family Daes_2102 PF03916 Polysulphide reductase, NrfD Daes_2103 PF13247 4Fe-4S dicluster domain Daes_2103 PF00037 4Fe-4S binding domain Daes_2104 PF01568 Molydopterin dinucleotide binding domain Daes_2104 PF00384 Molybdopterin oxidoreductase Daes_2105 PF02085 Class III cytochrome C family Daes_2106 PF01050 Mannose-6-phosphate isomerase Daes_2106 PF00483 Nucleotidyl transferase Daes_2107 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Daes_2109 PF03819 MazG nucleotide pyrophosphohydrolase domain Daes_2111 PF13478 XdhC Rossmann domain Daes_2111 PF02625 XdhC and CoxI family Daes_2112 PF12804 MobA-like NTP transferase domain Daes_2115 PF01475 Ferric uptake regulator family Daes_2117 PF02110 Hydroxyethylthiazole kinase family Daes_2118 PF00270 DEAD/DEAH box helicase Daes_2118 PF00271 Helicase conserved C-terminal domain Daes_2120 PF01925 Sulfite exporter TauE/SafE Daes_2121 PF01926 50S ribosome-binding GTPase Daes_2121 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Daes_2122 PF00672 HAMP domain Daes_2122 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_2122 PF13426 PAS domain Daes_2123 PF01008 Initiation factor 2 subunit family Daes_2124 PF02934 GatB/GatE catalytic domain Daes_2124 PF02637 GatB domain Daes_2128 PF01513 ATP-NAD kinase Daes_2131 PF02623 FliW protein Daes_2132 PF02599 Global regulator protein family Daes_2134 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Daes_2134 PF00460 Flagella basal body rod protein Daes_2134 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Daes_2134 PF00460 Flagella basal body rod protein Daes_2137 PF02119 Flagellar P-ring protein Daes_2138 PF02107 Flagellar L-ring protein Daes_2140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Daes_2140 PF00460 Flagella basal body rod protein Daes_2141 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Daes_2141 PF00460 Flagella basal body rod protein Daes_2142 PF17384 RimP C-terminal SH3 domain Daes_2142 PF02576 RimP N-terminal domain Daes_2143 PF00575 S1 RNA binding domain Daes_2143 PF08529 NusA N-terminal domain Daes_2143 PF13184 NusA-like KH domain Daes_2145 PF04760 Translation initiation factor IF-2, N-terminal region Daes_2145 PF11987 Translation-initiation factor 2 Daes_2145 PF00009 Elongation factor Tu GTP binding domain Daes_2145 PF04760 Translation initiation factor IF-2, N-terminal region Daes_2145 PF11987 Translation-initiation factor 2 Daes_2145 PF00009 Elongation factor Tu GTP binding domain Daes_2147 PF02033 Ribosome-binding factor A Daes_2149 PF01509 TruB family pseudouridylate synthase (N terminal domain) Daes_2149 PF16198 tRNA pseudouridylate synthase B C-terminal domain Daes_2150 PF00312 Ribosomal protein S15 Daes_2151 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Daes_2151 PF00013 KH domain Daes_2151 PF03725 3' exoribonuclease family, domain 2 Daes_2151 PF00575 S1 RNA binding domain Daes_2151 PF01138 3' exoribonuclease family, domain 1 Daes_2152 PF01875 Memo-like protein Daes_2154 PF00072 Response regulator receiver domain Daes_2154 PF00158 Sigma-54 interaction domain Daes_2154 PF02954 Bacterial regulatory protein, Fis family Daes_2159 PF02649 Type I GTP cyclohydrolase folE2 Daes_2160 PF08753 NikR C terminal nickel binding domain Daes_2160 PF01402 Ribbon-helix-helix protein, copG family Daes_2162 PF01597 Glycine cleavage H-protein Daes_2163 PF02347 Glycine cleavage system P-protein Daes_2164 PF02347 Glycine cleavage system P-protein Daes_2165 PF07992 Pyridine nucleotide-disulphide oxidoreductase Daes_2165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Daes_2173 PF00753 Metallo-beta-lactamase superfamily Daes_2173 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Daes_2173 PF17770 Ribonuclease J C-terminal domain Daes_2175 PF03144 Elongation factor Tu domain 2 Daes_2175 PF03764 Elongation factor G, domain IV Daes_2175 PF14492 Elongation Factor G, domain II Daes_2175 PF00679 Elongation factor G C-terminus Daes_2175 PF00009 Elongation factor Tu GTP binding domain Daes_2180 PF00318 Ribosomal protein S2 Daes_2181 PF00889 Elongation factor TS Daes_2182 PF00696 Amino acid kinase family Daes_2183 PF01765 Ribosome recycling factor Daes_2184 PF01255 Putative undecaprenyl diphosphate synthase Daes_2186 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Daes_2186 PF13288 DXP reductoisomerase C-terminal domain Daes_2186 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Daes_2187 PF02163 Peptidase family M50 Daes_2187 PF17820 PDZ domain Daes_2188 PF00814 Glycoprotease family Daes_2189 PF08299 Bacterial dnaA protein helix-turn-helix Daes_2189 PF00308 Bacterial dnaA protein Daes_2189 PF11638 DnaA N-terminal domain Daes_2190 PF02511 Thymidylate synthase complementing protein Daes_2196 PF00669 Bacterial flagellin N-terminal helical region Daes_2196 PF00700 Bacterial flagellin C-terminal helical region Daes_2197 PF07196 Flagellin hook IN motif Daes_2197 PF07195 Flagellar hook-associated protein 2 C-terminus Daes_2197 PF02465 Flagellar hook-associated protein 2 N-terminus Daes_2199 PF00534 Glycosyl transferases group 1 Daes_2199 PF13439 Glycosyltransferase Family 4 Daes_2203 PF00691 OmpA family Daes_2203 PF01389 OmpA-like transmembrane domain Daes_2204 PF13186 Iron-sulfur cluster-binding domain Daes_2204 PF05402 Coenzyme PQQ synthesis protein D (PqqD) Daes_2204 PF04055 Radical SAM superfamily Daes_2205 PF00490 Delta-aminolevulinic acid dehydratase Daes_2206 PF13186 Iron-sulfur cluster-binding domain Daes_2206 PF04055 Radical SAM superfamily Daes_2209 PF00834 Ribulose-phosphate 3 epimerase family Daes_2212 PF00171 Aldehyde dehydrogenase family Daes_2213 PF01037 Lrp/AsnC ligand binding domain Daes_2214 PF02405 Permease MlaE Daes_2215 PF00005 ABC transporter Daes_2218 PF04751 Protein of unknown function (DUF615) Daes_2220 PF00892 EamA-like transporter family Daes_2221 PF02621 Menaquinone biosynthesis Daes_2223 PF04055 Radical SAM superfamily Daes_2224 PF04055 Radical SAM superfamily Daes_2226 PF03466 LysR substrate binding domain Daes_2226 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Daes_2227 PF01196 Ribosomal protein L17 Daes_2228 PF01000 RNA polymerase Rpb3/RpoA insert domain Daes_2228 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Daes_2228 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Daes_2229 PF01479 S4 domain Daes_2229 PF00163 Ribosomal protein S4/S9 N-terminal domain Daes_2230 PF00411 Ribosomal protein S11 Daes_2231 PF00416 Ribosomal protein S13/S18 Daes_2232 PF00444 Ribosomal protein L36 Daes_2233 PF00557 Metallopeptidase family M24 Daes_2234 PF00344 SecY translocase Daes_2235 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Daes_2236 PF00327 Ribosomal protein L30p/L7e Daes_2237 PF00333 Ribosomal protein S5, N-terminal domain Daes_2237 PF03719 Ribosomal protein S5, C-terminal domain Daes_2238 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Daes_2239 PF00347 Ribosomal protein L6 Daes_2240 PF00410 Ribosomal protein S8 Daes_2241 PF00253 Ribosomal protein S14p/S29e Daes_2242 PF00673 ribosomal L5P family C-terminus Daes_2242 PF00281 Ribosomal protein L5 Daes_2243 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Daes_2243 PF00467 KOW motif Daes_2244 PF00238 Ribosomal protein L14p/L23e Daes_2245 PF00366 Ribosomal protein S17 Daes_2246 PF00831 Ribosomal L29 protein Daes_2247 PF00252 Ribosomal protein L16p/L10e Daes_2248 PF00189 Ribosomal protein S3, C-terminal domain Daes_2248 PF07650 KH domain Daes_2249 PF00237 Ribosomal protein L22p/L17e Daes_2250 PF00203 Ribosomal protein S19 Daes_2251 PF00181 Ribosomal Proteins L2, RNA binding domain Daes_2251 PF03947 Ribosomal Proteins L2, C-terminal domain Daes_2252 PF00276 Ribosomal protein L23 Daes_2253 PF00573 Ribosomal protein L4/L1 family Daes_2254 PF00297 Ribosomal protein L3 Daes_2255 PF00338 Ribosomal protein S10p/S20e Daes_2256 PF14492 Elongation Factor G, domain II Daes_2256 PF00679 Elongation factor G C-terminus Daes_2256 PF03144 Elongation factor Tu domain 2 Daes_2256 PF03764 Elongation factor G, domain IV Daes_2256 PF00009 Elongation factor Tu GTP binding domain Daes_2257 PF00177 Ribosomal protein S7p/S5e Daes_2258 PF00164 Ribosomal protein S12/S23 Daes_2259 PF05000 RNA polymerase Rpb1, domain 4 Daes_2259 PF04983 RNA polymerase Rpb1, domain 3 Daes_2259 PF00623 RNA polymerase Rpb1, domain 2 Daes_2259 PF04998 RNA polymerase Rpb1, domain 5 Daes_2259 PF04997 RNA polymerase Rpb1, domain 1 Daes_2260 PF04563 RNA polymerase beta subunit Daes_2260 PF00562 RNA polymerase Rpb2, domain 6 Daes_2260 PF04560 RNA polymerase Rpb2, domain 7 Daes_2260 PF10385 RNA polymerase beta subunit external 1 domain Daes_2260 PF04565 RNA polymerase Rpb2, domain 3 Daes_2260 PF04561 RNA polymerase Rpb2, domain 2 Daes_2261 PF16320 Ribosomal protein L7/L12 dimerisation domain Daes_2261 PF00542 Ribosomal protein L7/L12 C-terminal domain Daes_2262 PF00466 Ribosomal protein L10 Daes_2263 PF00687 Ribosomal protein L1p/L10e family Daes_2264 PF03946 Ribosomal protein L11, N-terminal domain Daes_2264 PF00298 Ribosomal protein L11, RNA binding domain Daes_2265 PF00467 KOW motif Daes_2265 PF02357 Transcription termination factor nusG Daes_2266 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Daes_2267 PF00471 Ribosomal protein L33 Daes_2268 PF03144 Elongation factor Tu domain 2 Daes_2268 PF00009 Elongation factor Tu GTP binding domain Daes_2268 PF03143 Elongation factor Tu C-terminal domain Daes_2269 PF01207 Dihydrouridine synthase (Dus) Daes_2270 PF00072 Response regulator receiver domain Daes_2270 PF01584 CheW-like domain Daes_2271 PF02769 AIR synthase related protein, C-terminal domain Daes_2271 PF00586 AIR synthase related protein, N-terminal domain Daes_2272 PF01924 Hydrogenase formation hypA family Daes_2276 PF07478 D-ala D-ala ligase C-terminus Daes_2278 PF02348 Cytidylyltransferase Daes_2279 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Daes_2279 PF00117 Glutamine amidotransferase class-I Daes_2282 PF00890 FAD binding domain Daes_2282 PF02910 Fumarate reductase flavoprotein C-term Daes_2284 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Daes_2285 PF00293 NUDIX domain Daes_2286 PF01300 Telomere recombination Daes_2287 PF12105 SpoU, rRNA methylase, C-terminal Daes_2287 PF00588 SpoU rRNA Methylase family Daes_2288 PF00158 Sigma-54 interaction domain Daes_2288 PF00072 Response regulator receiver domain Daes_2288 PF02954 Bacterial regulatory protein, Fis family Daes_2290 PF01627 Hpt domain Daes_2290 PF01584 CheW-like domain Daes_2290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2290 PF07194 P2 response regulator binding domain Daes_2290 PF02895 Signal transducing histidine kinase, homodimeric domain Daes_2291 PF06180 Cobalt chelatase (CbiK) Daes_2292 PF01032 FecCD transport family Daes_2293 PF00005 ABC transporter Daes_2295 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Daes_2296 PF06180 Cobalt chelatase (CbiK) Daes_2302 PF03099 Biotin/lipoate A/B protein ligase family Daes_2303 PF04055 Radical SAM superfamily Daes_2303 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Daes_2304 PF13545 Crp-like helix-turn-helix domain Daes_2304 PF00027 Cyclic nucleotide-binding domain Daes_2309 PF01368 DHH family Daes_2309 PF17768 RecJ OB domain Daes_2309 PF02272 DHHA1 domain Daes_2312 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Daes_2313 PF00625 Guanylate kinase Daes_2314 PF04025 Domain of unknown function (DUF370) Daes_2315 PF08340 Domain of unknown function (DUF1732) Daes_2315 PF03755 YicC-like family, N-terminal region Daes_2317 PF04055 Radical SAM superfamily Daes_2317 PF00919 Uncharacterized protein family UPF0004 Daes_2321 PF00465 Iron-containing alcohol dehydrogenase Daes_2322 PF03577 Peptidase family C69 Daes_2323 PF01425 Amidase Daes_2324 PF02686 Glu-tRNAGln amidotransferase C subunit Daes_2326 PF00012 Hsp70 protein Daes_2327 PF01025 GrpE Daes_2330 PF00561 alpha/beta hydrolase fold Daes_2331 PF07690 Major Facilitator Superfamily Daes_2332 PF17871 AAA lid domain Daes_2332 PF07724 AAA domain (Cdc48 subfamily) Daes_2332 PF02861 Clp amino terminal domain, pathogenicity island component Daes_2332 PF10431 C-terminal, D2-small domain, of ClpB protein Daes_2332 PF00004 ATPase family associated with various cellular activities (AAA) Daes_2334 PF00226 DnaJ domain Daes_2334 PF01556 DnaJ C terminal domain Daes_2335 PF04972 BON domain Daes_2336 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Daes_2336 PF01676 Metalloenzyme superfamily Daes_2338 PF00849 RNA pseudouridylate synthase Daes_2340 PF00860 Permease family Daes_2341 PF00535 Glycosyl transferase family 2 Daes_2342 PF00924 Mechanosensitive ion channel Daes_2342 PF05552 Conserved TM helix Daes_2343 PF02684 Lipid-A-disaccharide synthetase Daes_2344 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Daes_2344 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Daes_2350 PF00291 Pyridoxal-phosphate dependent enzyme Daes_2351 PF00171 Aldehyde dehydrogenase family Daes_2355 PF00158 Sigma-54 interaction domain Daes_2355 PF01590 GAF domain Daes_2355 PF02954 Bacterial regulatory protein, Fis family Daes_2358 PF02709 N-terminal domain of galactosyltransferase Daes_2358 PF00535 Glycosyl transferase family 2 Daes_2361 PF00313 'Cold-shock' DNA-binding domain Daes_2362 PF00005 ABC transporter Daes_2363 PF04015 Domain of unknown function (DUF362) Daes_2364 PF07503 HypF finger Daes_2364 PF01300 Telomere recombination Daes_2364 PF17788 HypF Kae1-like domain Daes_2364 PF00708 Acylphosphatase Daes_2365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Daes_2365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Daes_2367 PF04073 Aminoacyl-tRNA editing domain Daes_2367 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Daes_2367 PF03129 Anticodon binding domain Daes_2368 PF04551 GcpE protein Daes_2369 PF02743 Cache domain Daes_2369 PF00672 HAMP domain Daes_2369 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_2371 PF00374 Nickel-dependent hydrogenase Daes_2371 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Daes_2373 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Daes_2376 PF01507 Phosphoadenosine phosphosulfate reductase family Daes_2379 PF13276 HTH-like domain Daes_2379 PF13683 Integrase core domain Daes_2380 PF01527 Transposase Daes_2386 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) Daes_2387 PF04865 Baseplate J-like protein Daes_2388 PF07409 Phage protein GP46 Daes_2389 PF06890 Bacteriophage Mu Gp45 protein Daes_2391 PF07157 DNA circularisation protein N-terminus Daes_2394 PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 Daes_2396 PF04984 Phage tail sheath protein subtilisin-like domain Daes_2396 PF17482 Phage tail sheath C-terminal domain Daes_2402 PF10124 Mu-like prophage major head subunit gpT Daes_2406 PF06074 Protein of unknown function (DUF935) Daes_2407 PF03237 Terminase-like family Daes_2425 PF13401 AAA domain Daes_2425 PF01471 Putative peptidoglycan binding domain Daes_2431 PF00216 Bacterial DNA-binding protein Daes_2436 PF08765 Mor transcription activator family Daes_2437 PF02913 FAD linked oxidases, C-terminal domain Daes_2437 PF01565 FAD binding domain Daes_2438 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2438 PF00512 His Kinase A (phospho-acceptor) domain Daes_2438 PF00989 PAS fold Daes_2440 PF03652 Holliday junction resolvase Daes_2441 PF02618 YceG-like family Daes_2442 PF10502 Signal peptidase, peptidase S26 Daes_2443 PF00535 Glycosyl transferase family 2 Daes_2444 PF01171 PP-loop family Daes_2446 PF00072 Response regulator receiver domain Daes_2447 PF00977 Histidine biosynthesis protein Daes_2450 PF01527 Transposase Daes_2451 PF12762 ISXO2-like transposase domain Daes_2453 PF00475 Imidazoleglycerol-phosphate dehydratase Daes_2454 PF00902 Sec-independent protein translocase protein (TatC) Daes_2455 PF02416 mttA/Hcf106 family Daes_2456 PF00958 GMP synthase C terminal domain Daes_2456 PF00117 Glutamine amidotransferase class-I Daes_2456 PF02540 NAD synthase Daes_2457 PF00478 IMP dehydrogenase / GMP reductase domain Daes_2457 PF00571 CBS domain Daes_2458 PF00005 ABC transporter Daes_2459 PF12399 Branched-chain amino acid ATP-binding cassette transporter Daes_2459 PF00005 ABC transporter Daes_2460 PF02653 Branched-chain amino acid transport system / permease component Daes_2460 PF11862 Domain of unknown function (DUF3382) Daes_2461 PF02653 Branched-chain amino acid transport system / permease component Daes_2462 PF13458 Periplasmic binding protein Daes_2465 PF01578 Cytochrome C assembly protein Daes_2467 PF00005 ABC transporter Daes_2468 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Daes_2468 PF01578 Cytochrome C assembly protein Daes_2469 PF03100 CcmE Daes_2470 PF01595 Cyclin M transmembrane N-terminal domain Daes_2470 PF00571 CBS domain Daes_2472 PF01467 Cytidylyltransferase-like Daes_2473 PF02163 Peptidase family M50 Daes_2474 PF00579 tRNA synthetases class I (W and Y) Daes_2475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Daes_2477 PF04333 MlaA lipoprotein Daes_2479 PF01625 Peptide methionine sulfoxide reductase Daes_2479 PF01641 SelR domain Daes_2482 PF00873 AcrB/AcrD/AcrF family Daes_2483 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Daes_2486 PF13361 UvrD-like helicase C-terminal domain Daes_2486 PF00580 UvrD/REP helicase N-terminal domain Daes_2486 PF00570 HRDC domain Daes_2491 PF01367 5'-3' exonuclease, C-terminal SAM fold Daes_2491 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Daes_2491 PF00476 DNA polymerase family A Daes_2491 PF09281 Taq polymerase, exonuclease Daes_2492 PF01925 Sulfite exporter TauE/SafE Daes_2493 PF01070 FMN-dependent dehydrogenase Daes_2494 PF00392 Bacterial regulatory proteins, gntR family Daes_2494 PF07729 FCD domain Daes_2496 PF00149 Calcineurin-like phosphoesterase Daes_2497 PF04055 Radical SAM superfamily Daes_2498 PF13597 Anaerobic ribonucleoside-triphosphate reductase Daes_2498 PF03477 ATP cone domain Daes_2507 PF00156 Phosphoribosyl transferase domain Daes_2508 PF00206 Lyase Daes_2508 PF10397 Adenylosuccinate lyase C-terminus Daes_2514 PF00708 Acylphosphatase Daes_2515 PF00672 HAMP domain Daes_2515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2515 PF13426 PAS domain Daes_2515 PF00512 His Kinase A (phospho-acceptor) domain Daes_2516 PF02954 Bacterial regulatory protein, Fis family Daes_2516 PF00158 Sigma-54 interaction domain Daes_2516 PF00072 Response regulator receiver domain Daes_2517 PF01584 CheW-like domain Daes_2517 PF00072 Response regulator receiver domain Daes_2519 PF00072 Response regulator receiver domain Daes_2520 PF00072 Response regulator receiver domain Daes_2520 PF00486 Transcriptional regulatory protein, C terminal Daes_2521 PF08448 PAS fold Daes_2521 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2521 PF00512 His Kinase A (phospho-acceptor) domain Daes_2521 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB Daes_2521 PF00672 HAMP domain Daes_2523 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2523 PF00989 PAS fold Daes_2523 PF00512 His Kinase A (phospho-acceptor) domain Daes_2524 PF01380 SIS domain Daes_2525 PF08722 TnsA endonuclease N terminal Daes_2525 PF08721 TnsA endonuclease C terminal Daes_2526 PF00665 Integrase core domain Daes_2527 PF11426 Tn7 transposition regulator TnsC Daes_2527 PF13401 AAA domain Daes_2529 PF01527 Transposase Daes_2543 PF13419 Haloacid dehalogenase-like hydrolase Daes_2544 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Daes_2544 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Daes_2545 PF00485 Phosphoribulokinase / Uridine kinase family Daes_2546 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Daes_2548 PF00072 Response regulator receiver domain Daes_2548 PF00158 Sigma-54 interaction domain Daes_2548 PF02954 Bacterial regulatory protein, Fis family Daes_2549 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Daes_2549 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Daes_2550 PF00834 Ribulose-phosphate 3 epimerase family Daes_2551 PF01116 Fructose-bisphosphate aldolase class-II Daes_2552 PF00224 Pyruvate kinase, barrel domain Daes_2552 PF02887 Pyruvate kinase, alpha/beta domain Daes_2553 PF00162 Phosphoglycerate kinase Daes_2554 PF02780 Transketolase, C-terminal domain Daes_2554 PF02779 Transketolase, pyrimidine binding domain Daes_2554 PF00456 Transketolase, thiamine diphosphate binding domain Daes_2556 PF01494 FAD binding domain Daes_2558 PF01527 Transposase Daes_2560 PF13683 Integrase core domain Daes_2560 PF13276 HTH-like domain Daes_2561 PF01527 Transposase Daes_2562 PF13542 Helix-turn-helix domain of transposase family ISL3 Daes_2562 PF01610 Transposase Daes_2562 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Daes_2563 PF13332 Hemagglutinin repeat Daes_2563 PF13018 Extended Signal Peptide of Type V secretion system Daes_2563 PF04829 Pre-toxin domain with VENN motif Daes_2563 PF05860 haemagglutination activity domain Daes_2564 PF08479 POTRA domain, ShlB-type Daes_2564 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Daes_2564 PF17287 POTRA domain Daes_2565 PF12762 ISXO2-like transposase domain Daes_2571 PF01926 50S ribosome-binding GTPase Daes_2571 PF12631 MnmE helical domain Daes_2571 PF10396 GTP-binding protein TrmE N-terminus Daes_2572 PF14804 Jag N-terminus Daes_2572 PF01424 R3H domain Daes_2573 PF02096 60Kd inner membrane protein Daes_2573 PF14849 YidC periplasmic domain Daes_2574 PF01809 Putative membrane protein insertion efficiency factor Daes_2575 PF00825 Ribonuclease P Daes_2576 PF00468 Ribosomal protein L34 Daes_2579 PF13545 Crp-like helix-turn-helix domain Daes_2579 PF00027 Cyclic nucleotide-binding domain Daes_2582 PF10518 TAT (twin-arginine translocation) pathway signal sequence Daes_2582 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Daes_2582 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Daes_2583 PF00374 Nickel-dependent hydrogenase Daes_2584 PF01750 Hydrogenase maturation protease Daes_2585 PF01455 HupF/HypC family Daes_2586 PF00149 Calcineurin-like phosphoesterase Daes_2586 PF02872 5'-nucleotidase, C-terminal domain Daes_2587 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Daes_2587 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Daes_2588 PF06865 Pyrimidine/purine nucleoside phosphorylase Daes_2590 PF00072 Response regulator receiver domain Daes_2590 PF01966 HD domain Daes_2594 PF01212 Beta-eliminating lyase Daes_2595 PF03641 Possible lysine decarboxylase Daes_2597 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Daes_2601 PF00166 Chaperonin 10 Kd subunit Daes_2602 PF00118 TCP-1/cpn60 chaperonin family Daes_2603 PF03992 Antibiotic biosynthesis monooxygenase Daes_2605 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain Daes_2605 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Daes_2608 PF01758 Sodium Bile acid symporter family Daes_2612 PF01728 FtsJ-like methyltransferase Daes_2613 PF01709 Transcriptional regulator Daes_2614 PF02075 Crossover junction endodeoxyribonuclease RuvC Daes_2616 PF01330 RuvA N terminal domain Daes_2617 PF05496 Holliday junction DNA helicase RuvB P-loop domain Daes_2617 PF05491 RuvB C-terminal winged helix domain Daes_2617 PF17864 RuvB AAA lid domain Daes_2618 PF00301 Rubredoxin Daes_2620 PF00753 Metallo-beta-lactamase superfamily Daes_2620 PF00258 Flavodoxin Daes_2621 PF03459 TOBE domain Daes_2621 PF00005 ABC transporter Daes_2622 PF00528 Binding-protein-dependent transport system inner membrane component Daes_2625 PF01717 Cobalamin-independent synthase, Catalytic domain Daes_2625 PF08267 Cobalamin-independent synthase, N-terminal domain Daes_2629 PF13426 PAS domain Daes_2629 PF00563 EAL domain Daes_2629 PF00990 Diguanylate cyclase, GGDEF domain Daes_2629 PF05231 MASE1 Daes_2629 PF08447 PAS fold Daes_2629 PF08448 PAS fold Daes_2629 PF08447 PAS fold Daes_2629 PF00990 Diguanylate cyclase, GGDEF domain Daes_2629 PF05231 MASE1 Daes_2629 PF08448 PAS fold Daes_2629 PF13426 PAS domain Daes_2629 PF00563 EAL domain Daes_2634 PF00072 Response regulator receiver domain Daes_2634 PF13188 PAS domain Daes_2634 PF08448 PAS fold Daes_2634 PF00512 His Kinase A (phospho-acceptor) domain Daes_2634 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2635 PF00072 Response regulator receiver domain Daes_2635 PF00158 Sigma-54 interaction domain Daes_2635 PF02954 Bacterial regulatory protein, Fis family Daes_2636 PF02954 Bacterial regulatory protein, Fis family Daes_2636 PF00158 Sigma-54 interaction domain Daes_2636 PF00072 Response regulator receiver domain Daes_2637 PF00072 Response regulator receiver domain Daes_2638 PF00072 Response regulator receiver domain Daes_2638 PF02954 Bacterial regulatory protein, Fis family Daes_2638 PF00158 Sigma-54 interaction domain Daes_2641 PF02085 Class III cytochrome C family Daes_2642 PF02754 Cysteine-rich domain Daes_2646 PF00158 Sigma-54 interaction domain Daes_2646 PF13426 PAS domain Daes_2646 PF02954 Bacterial regulatory protein, Fis family Daes_2649 PF00072 Response regulator receiver domain Daes_2649 PF00158 Sigma-54 interaction domain Daes_2649 PF02954 Bacterial regulatory protein, Fis family Daes_2651 PF00072 Response regulator receiver domain Daes_2653 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Daes_2654 PF00501 AMP-binding enzyme Daes_2654 PF13193 AMP-binding enzyme C-terminal domain Daes_2655 PF00512 His Kinase A (phospho-acceptor) domain Daes_2655 PF09308 LuxQ, periplasmic Daes_2655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2655 PF00072 Response regulator receiver domain Daes_2657 PF03591 AzlC protein Daes_2658 PF00392 Bacterial regulatory proteins, gntR family Daes_2658 PF00155 Aminotransferase class I and II Daes_2659 PF00892 EamA-like transporter family Daes_2660 PF01022 Bacterial regulatory protein, arsR family Daes_2664 PF00072 Response regulator receiver domain Daes_2664 PF17149 Periplasmic sensor domain found in signal transduction proteins Daes_2664 PF01627 Hpt domain Daes_2664 PF00512 His Kinase A (phospho-acceptor) domain Daes_2664 PF00672 HAMP domain Daes_2664 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2665 PF01627 Hpt domain Daes_2665 PF00672 HAMP domain Daes_2665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2665 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Daes_2665 PF00512 His Kinase A (phospho-acceptor) domain Daes_2665 PF00072 Response regulator receiver domain Daes_2670 PF01295 Adenylate cyclase, class-I Daes_2670 PF12633 Adenylate cyclase NT domain Daes_2671 PF00950 ABC 3 transport family Daes_2672 PF00005 ABC transporter Daes_2674 PF01915 Glycosyl hydrolase family 3 C-terminal domain Daes_2674 PF00933 Glycosyl hydrolase family 3 N terminal domain Daes_2676 PF00291 Pyridoxal-phosphate dependent enzyme Daes_2677 PF02146 Sir2 family Daes_2678 PF00180 Isocitrate/isopropylmalate dehydrogenase Daes_2680 PF12437 Glutamine synthetase type III N terminal Daes_2680 PF00120 Glutamine synthetase, catalytic domain Daes_2680 PF18318 Glutamine synthetase C-terminal domain Daes_2681 PF00849 RNA pseudouridylate synthase Daes_2683 PF01272 Transcription elongation factor, GreA/GreB, C-term Daes_2683 PF03449 Transcription elongation factor, N-terminal Daes_2684 PF02608 ABC transporter substrate-binding protein PnrA-like Daes_2685 PF00005 ABC transporter Daes_2688 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Daes_2688 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Daes_2689 PF05161 MOFRL family Daes_2689 PF13660 Domain of unknown function (DUF4147) Daes_2690 PF01427 D-ala-D-ala dipeptidase Daes_2692 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2692 PF00989 PAS fold Daes_2692 PF00512 His Kinase A (phospho-acceptor) domain Daes_2693 PF02659 Putative manganese efflux pump Daes_2694 PF00072 Response regulator receiver domain Daes_2694 PF02954 Bacterial regulatory protein, Fis family Daes_2694 PF00158 Sigma-54 interaction domain Daes_2695 PF02954 Bacterial regulatory protein, Fis family Daes_2695 PF00158 Sigma-54 interaction domain Daes_2695 PF00072 Response regulator receiver domain Daes_2696 PF13188 PAS domain Daes_2696 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2696 PF00512 His Kinase A (phospho-acceptor) domain Daes_2696 PF00072 Response regulator receiver domain Daes_2696 PF08448 PAS fold Daes_2697 PF00158 Sigma-54 interaction domain Daes_2697 PF00072 Response regulator receiver domain Daes_2697 PF02954 Bacterial regulatory protein, Fis family Daes_2698 PF02954 Bacterial regulatory protein, Fis family Daes_2698 PF00158 Sigma-54 interaction domain Daes_2698 PF00072 Response regulator receiver domain Daes_2705 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Daes_2705 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Daes_2707 PF13579 Glycosyl transferase 4-like domain Daes_2707 PF00534 Glycosyl transferases group 1 Daes_2709 PF11897 Protein of unknown function (DUF3417) Daes_2709 PF00343 Carbohydrate phosphorylase Daes_2710 PF00158 Sigma-54 interaction domain Daes_2710 PF02954 Bacterial regulatory protein, Fis family Daes_2710 PF00072 Response regulator receiver domain Daes_2713 PF04055 Radical SAM superfamily Daes_2713 PF12544 Lysine-2,3-aminomutase Daes_2714 PF07478 D-ala D-ala ligase C-terminus Daes_2714 PF01820 D-ala D-ala ligase N-terminus Daes_2715 PF01820 D-ala D-ala ligase N-terminus Daes_2715 PF07478 D-ala D-ala ligase C-terminus Daes_2717 PF00850 Histone deacetylase domain Daes_2718 PF00300 Histidine phosphatase superfamily (branch 1) Daes_2720 PF02358 Trehalose-phosphatase Daes_2720 PF03633 Glycosyl hydrolase family 65, C-terminal domain Daes_2720 PF03636 Glycosyl hydrolase family 65, N-terminal domain Daes_2720 PF03632 Glycosyl hydrolase family 65 central catalytic domain Daes_2723 PF01590 GAF domain Daes_2723 PF00563 EAL domain Daes_2723 PF00360 Phytochrome region Daes_2723 PF00990 Diguanylate cyclase, GGDEF domain Daes_2726 PF00575 S1 RNA binding domain Daes_2726 PF08461 Ribonuclease R winged-helix domain Daes_2726 PF00773 RNB domain Daes_2726 PF17876 Cold shock domain Daes_2726 PF08206 Ribonuclease B OB domain Daes_2727 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Daes_2728 PF01027 Inhibitor of apoptosis-promoting Bax1 Daes_2729 PF13581 Histidine kinase-like ATPase domain Daes_2729 PF13426 PAS domain Daes_2729 PF07568 Histidine kinase Daes_2731 PF01699 Sodium/calcium exchanger protein Daes_2733 PF01814 Hemerythrin HHE cation binding domain Daes_2734 PF00154 recA bacterial DNA recombination protein Daes_2735 PF01411 tRNA synthetases class II (A) Daes_2735 PF02272 DHHA1 domain Daes_2735 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Daes_2736 PF00572 Ribosomal protein L13 Daes_2737 PF00380 Ribosomal protein S9/S16 Daes_2740 PF01891 Cobalt uptake substrate-specific transmembrane region Daes_2742 PF02082 Transcriptional regulator Daes_2743 PF03006 Haemolysin-III related Daes_2745 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Daes_2748 PF10609 NUBPL iron-transfer P-loop NTPase Daes_2750 PF00158 Sigma-54 interaction domain Daes_2750 PF00072 Response regulator receiver domain Daes_2750 PF02954 Bacterial regulatory protein, Fis family Daes_2751 PF02492 CobW/HypB/UreG, nucleotide-binding domain Daes_2752 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Daes_2753 PF00072 Response regulator receiver domain Daes_2753 PF00512 His Kinase A (phospho-acceptor) domain Daes_2753 PF01627 Hpt domain Daes_2753 PF00672 HAMP domain Daes_2753 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2753 PF17149 Periplasmic sensor domain found in signal transduction proteins Daes_2754 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Daes_2756 PF00583 Acetyltransferase (GNAT) family Daes_2757 PF12911 N-terminal TM domain of oligopeptide transport permease C Daes_2757 PF00528 Binding-protein-dependent transport system inner membrane component Daes_2758 PF00528 Binding-protein-dependent transport system inner membrane component Daes_2763 PF02769 AIR synthase related protein, C-terminal domain Daes_2763 PF00586 AIR synthase related protein, N-terminal domain Daes_2764 PF01938 TRAM domain Daes_2764 PF05958 tRNA (Uracil-5-)-methyltransferase Daes_2769 PF00072 Response regulator receiver domain Daes_2770 PF02887 Pyruvate kinase, alpha/beta domain Daes_2770 PF00224 Pyruvate kinase, barrel domain Daes_2771 PF02381 MraZ protein, putative antitoxin-like Daes_2772 PF01795 MraW methylase family Daes_2774 PF03717 Penicillin-binding Protein dimerisation domain Daes_2774 PF00905 Penicillin binding protein transpeptidase domain Daes_2775 PF01225 Mur ligase family, catalytic domain Daes_2775 PF02875 Mur ligase family, glutamate ligase domain Daes_2775 PF08245 Mur ligase middle domain Daes_2776 PF02875 Mur ligase family, glutamate ligase domain Daes_2776 PF01225 Mur ligase family, catalytic domain Daes_2776 PF08245 Mur ligase middle domain Daes_2777 PF00953 Glycosyl transferase family 4 Daes_2777 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Daes_2778 PF08245 Mur ligase middle domain Daes_2779 PF01098 Cell cycle protein Daes_2780 PF03033 Glycosyltransferase family 28 N-terminal domain Daes_2780 PF04101 Glycosyltransferase family 28 C-terminal domain Daes_2781 PF08245 Mur ligase middle domain Daes_2781 PF01225 Mur ligase family, catalytic domain Daes_2781 PF02875 Mur ligase family, glutamate ligase domain Daes_2782 PF01565 FAD binding domain Daes_2782 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Daes_2783 PF03799 Cell division protein FtsQ Daes_2783 PF08478 POTRA domain, FtsQ-type Daes_2784 PF02491 SHS2 domain inserted in FTSA Daes_2785 PF00091 Tubulin/FtsZ family, GTPase domain Daes_2785 PF12327 FtsZ family, C-terminal domain Daes_2786 PF04055 Radical SAM superfamily Daes_2786 PF18693 TRAM domain Daes_2786 PF00919 Uncharacterized protein family UPF0004 Daes_2787 PF01548 Transposase Daes_2787 PF02371 Transposase IS116/IS110/IS902 family Daes_2788 PF13683 Integrase core domain Daes_2788 PF13276 HTH-like domain Daes_2789 PF01527 Transposase Daes_2792 PF01548 Transposase Daes_2792 PF02371 Transposase IS116/IS110/IS902 family Daes_2793 PF00464 Serine hydroxymethyltransferase Daes_2794 PF02801 Beta-ketoacyl synthase, C-terminal domain Daes_2794 PF00109 Beta-ketoacyl synthase, N-terminal domain Daes_2795 PF00550 Phosphopantetheine attachment site Daes_2797 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Daes_2797 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Daes_2798 PF02504 Fatty acid synthesis protein Daes_2799 PF01783 Ribosomal L32p protein family Daes_2801 PF00830 Ribosomal L28 family Daes_2804 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Daes_2804 PF01568 Molydopterin dinucleotide binding domain Daes_2804 PF00384 Molybdopterin oxidoreductase Daes_2805 PF13247 4Fe-4S dicluster domain Daes_2806 PF00749 tRNA synthetases class I (E and Q), catalytic domain Daes_2807 PF01106 NifU-like domain Daes_2808 PF00753 Metallo-beta-lactamase superfamily Daes_2809 PF02954 Bacterial regulatory protein, Fis family Daes_2809 PF00072 Response regulator receiver domain Daes_2809 PF00158 Sigma-54 interaction domain Daes_2810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2810 PF00512 His Kinase A (phospho-acceptor) domain Daes_2813 PF01872 RibD C-terminal domain Daes_2813 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Daes_2816 PF00677 Lumazine binding domain Daes_2818 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Daes_2818 PF00925 GTP cyclohydrolase II Daes_2819 PF00885 6,7-dimethyl-8-ribityllumazine synthase Daes_2820 PF01029 NusB family Daes_2821 PF00133 tRNA synthetases class I (I, L, M and V) Daes_2821 PF13603 Leucyl-tRNA synthetase, Domain 2 Daes_2821 PF09334 tRNA synthetases class I (M) Daes_2821 PF08264 Anticodon-binding domain of tRNA Daes_2827 PF04002 RadC-like JAB domain Daes_2828 PF00708 Acylphosphatase Daes_2829 PF02190 ATP-dependent protease La (LON) substrate-binding domain Daes_2829 PF00004 ATPase family associated with various cellular activities (AAA) Daes_2829 PF05362 Lon protease (S16) C-terminal proteolytic domain Daes_2835 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Daes_2835 PF03900 Porphobilinogen deaminase, C-terminal domain Daes_2837 PF02277 Phosphoribosyltransferase Daes_2842 PF01202 Shikimate kinase Daes_2843 PF00156 Phosphoribosyl transferase domain Daes_2847 PF00005 ABC transporter Daes_2849 PF13458 Periplasmic binding protein Daes_2851 PF02653 Branched-chain amino acid transport system / permease component Daes_2852 PF00501 AMP-binding enzyme Daes_2853 PF00005 ABC transporter Daes_2853 PF12399 Branched-chain amino acid ATP-binding cassette transporter Daes_2856 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Daes_2857 PF00155 Aminotransferase class I and II Daes_2859 PF02463 RecF/RecN/SMC N terminal domain Daes_2860 PF00497 Bacterial extracellular solute-binding proteins, family 3 Daes_2865 PF01966 HD domain Daes_2865 PF00072 Response regulator receiver domain Daes_2871 PF00881 Nitroreductase family Daes_2872 PF00753 Metallo-beta-lactamase superfamily Daes_2874 PF00156 Phosphoribosyl transferase domain Daes_2875 PF00829 Ribosomal prokaryotic L21 protein Daes_2876 PF01016 Ribosomal L27 protein Daes_2877 PF01018 GTP1/OBG Daes_2877 PF01926 50S ribosome-binding GTPase Daes_2878 PF00696 Amino acid kinase family Daes_2878 PF01472 PUA domain Daes_2879 PF07690 Major Facilitator Superfamily Daes_2879 PF00083 Sugar (and other) transporter Daes_2882 PF00696 Amino acid kinase family Daes_2883 PF01814 Hemerythrin HHE cation binding domain Daes_2884 PF03454 MoeA C-terminal region (domain IV) Daes_2884 PF00994 Probable molybdopterin binding domain Daes_2884 PF03453 MoeA N-terminal region (domain I and II) Daes_2886 PF05221 S-adenosyl-L-homocysteine hydrolase Daes_2886 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Daes_2887 PF13847 Methyltransferase domain Daes_2887 PF03551 Transcriptional regulator PadR-like family Daes_2889 PF00158 Sigma-54 interaction domain Daes_2889 PF02954 Bacterial regulatory protein, Fis family Daes_2889 PF00072 Response regulator receiver domain Daes_2894 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2894 PF18698 Histidine kinase sensor domain Daes_2894 PF00512 His Kinase A (phospho-acceptor) domain Daes_2894 PF00989 PAS fold Daes_2894 PF00672 HAMP domain Daes_2899 PF03480 Bacterial extracellular solute-binding protein, family 7 Daes_2900 PF03480 Bacterial extracellular solute-binding protein, family 7 Daes_2902 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Daes_2903 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Daes_2903 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Daes_2906 PF08448 PAS fold Daes_2906 PF13188 PAS domain Daes_2906 PF00072 Response regulator receiver domain Daes_2906 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2906 PF00512 His Kinase A (phospho-acceptor) domain Daes_2910 PF00437 Type II/IV secretion system protein Daes_2913 PF13629 Pilus formation protein N terminal region Daes_2913 PF00263 Bacterial type II and III secretion system protein Daes_2913 PF04972 BON domain Daes_2917 PF00072 Response regulator receiver domain Daes_2917 PF02954 Bacterial regulatory protein, Fis family Daes_2917 PF00158 Sigma-54 interaction domain Daes_2922 PF00497 Bacterial extracellular solute-binding proteins, family 3 Daes_2924 PF00749 tRNA synthetases class I (E and Q), catalytic domain Daes_2924 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Daes_2930 PF12762 ISXO2-like transposase domain Daes_2935 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF Daes_2935 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Daes_2935 PF01189 16S rRNA methyltransferase RsmB/F Daes_2937 PF03480 Bacterial extracellular solute-binding protein, family 7 Daes_2939 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Daes_2943 PF01479 S4 domain Daes_2943 PF00849 RNA pseudouridylate synthase Daes_2945 PF00877 NlpC/P60 family Daes_2946 PF00118 TCP-1/cpn60 chaperonin family Daes_2947 PF00166 Chaperonin 10 Kd subunit Daes_2948 PF00982 Glycosyltransferase family 20 Daes_2950 PF00563 EAL domain Daes_2950 PF03707 Bacterial signalling protein N terminal repeat Daes_2950 PF00990 Diguanylate cyclase, GGDEF domain Daes_2952 PF00072 Response regulator receiver domain Daes_2952 PF01627 Hpt domain Daes_2952 PF00512 His Kinase A (phospho-acceptor) domain Daes_2952 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2952 PF00672 HAMP domain Daes_2952 PF17149 Periplasmic sensor domain found in signal transduction proteins Daes_2955 PF09084 NMT1/THI5 like Daes_2956 PF00672 HAMP domain Daes_2956 PF07228 Stage II sporulation protein E (SpoIIE) Daes_2961 PF01926 50S ribosome-binding GTPase Daes_2961 PF06071 Protein of unknown function (DUF933) Daes_2962 PF00440 Bacterial regulatory proteins, tetR family Daes_2962 PF13977 BetI-type transcriptional repressor, C-terminal Daes_2966 PF00672 HAMP domain Daes_2966 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_2966 PF17200 Single Cache domain 2 Daes_2969 PF01584 CheW-like domain Daes_2969 PF00072 Response regulator receiver domain Daes_2970 PF08666 SAF domain Daes_2970 PF03102 NeuB family Daes_2972 PF00501 AMP-binding enzyme Daes_2972 PF13193 AMP-binding enzyme C-terminal domain Daes_2974 PF02653 Branched-chain amino acid transport system / permease component Daes_2976 PF12399 Branched-chain amino acid ATP-binding cassette transporter Daes_2976 PF00005 ABC transporter Daes_2977 PF00005 ABC transporter Daes_2978 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Daes_2980 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Daes_2982 PF07685 CobB/CobQ-like glutamine amidotransferase domain Daes_2982 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Daes_2983 PF08679 Dissimilatory sulfite reductase D (DsrD) Daes_2984 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Daes_2984 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Daes_2985 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Daes_2985 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Daes_2988 PF01725 Ham1 family Daes_2989 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_2989 PF00512 His Kinase A (phospho-acceptor) domain Daes_2990 PF00919 Uncharacterized protein family UPF0004 Daes_2990 PF18693 TRAM domain Daes_2990 PF04055 Radical SAM superfamily Daes_2991 PF01548 Transposase Daes_2991 PF02371 Transposase IS116/IS110/IS902 family Daes_2992 PF02403 Seryl-tRNA synthetase N-terminal domain Daes_2992 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Daes_2995 PF00390 Malic enzyme, N-terminal domain Daes_2995 PF03949 Malic enzyme, NAD binding domain Daes_2995 PF01515 Phosphate acetyl/butaryl transferase Daes_2998 PF16868 NMT1-like family Daes_2999 PF00588 SpoU rRNA Methylase family Daes_3000 PF11799 impB/mucB/samB family C-terminal domain Daes_3000 PF00817 impB/mucB/samB family Daes_3000 PF11798 IMS family HHH motif Daes_3005 PF01416 tRNA pseudouridine synthase Daes_3006 PF13536 Putative multidrug resistance efflux transporter Daes_3009 PF01894 Uncharacterised protein family UPF0047 Daes_3010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Daes_3012 PF05175 Methyltransferase small domain Daes_3013 PF00923 Transaldolase/Fructose-6-phosphate aldolase Daes_3014 PF03372 Endonuclease/Exonuclease/phosphatase family Daes_3017 PF02224 Cytidylate kinase Daes_3018 PF00155 Aminotransferase class I and II Daes_3019 PF00582 Universal stress protein family Daes_3021 PF00005 ABC transporter Daes_3022 PF02653 Branched-chain amino acid transport system / permease component Daes_3022 PF11862 Domain of unknown function (DUF3382) Daes_3023 PF02653 Branched-chain amino acid transport system / permease component Daes_3024 PF13458 Periplasmic binding protein Daes_3025 PF00005 ABC transporter Daes_3025 PF12399 Branched-chain amino acid ATP-binding cassette transporter Daes_3026 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Daes_3027 PF00528 Binding-protein-dependent transport system inner membrane component Daes_3028 PF00571 CBS domain Daes_3028 PF00005 ABC transporter Daes_3031 PF14759 Reductase C-terminal Daes_3031 PF07992 Pyridine nucleotide-disulphide oxidoreductase Daes_3033 PF00890 FAD binding domain Daes_3034 PF13187 4Fe-4S dicluster domain Daes_3034 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit Daes_3035 PF01747 ATP-sulfurylase Daes_3035 PF14306 PUA-like domain Daes_3038 PF00330 Aconitase family (aconitate hydratase) Daes_3039 PF09312 SurA N-terminal domain Daes_3043 PF13860 FlgD Ig-like domain Daes_3043 PF03963 Flagellar hook capping protein - N-terminal region Daes_3043 PF13861 FlgD Tudor-like domain Daes_3044 PF07196 Flagellin hook IN motif Daes_3044 PF07559 Flagellar basal body protein FlaE Daes_3044 PF00460 Flagella basal body rod protein Daes_3044 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Daes_3045 PF00669 Bacterial flagellin N-terminal helical region Daes_3045 PF00700 Bacterial flagellin C-terminal helical region Daes_3046 PF00035 Double-stranded RNA binding motif Daes_3046 PF14622 Ribonuclease-III-like Daes_3048 PF07085 DRTGG domain Daes_3051 PF00117 Glutamine amidotransferase class-I Daes_3051 PF00958 GMP synthase C terminal domain Daes_3052 PF01343 Peptidase family S49 Daes_3053 PF00575 S1 RNA binding domain Daes_3054 PF01895 PhoU domain Daes_3055 PF00005 ABC transporter Daes_3059 PF03306 Alpha-acetolactate decarboxylase Daes_3060 PF03975 CheD chemotactic sensory transduction Daes_3062 PF04463 Protein of unknown function (DUF523) Daes_3068 PF17760 UvrA interaction domain Daes_3068 PF17755 UvrA DNA-binding domain Daes_3069 PF00072 Response regulator receiver domain Daes_3069 PF00486 Transcriptional regulatory protein, C terminal Daes_3071 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Daes_3073 PF01502 Phosphoribosyl-AMP cyclohydrolase Daes_3074 PF01634 ATP phosphoribosyltransferase Daes_3074 PF08029 HisG, C-terminal domain Daes_3075 PF00294 pfkB family carbohydrate kinase Daes_3075 PF01467 Cytidylyltransferase-like Daes_3077 PF02769 AIR synthase related protein, C-terminal domain Daes_3077 PF00586 AIR synthase related protein, N-terminal domain Daes_3078 PF00512 His Kinase A (phospho-acceptor) domain Daes_3078 PF00072 Response regulator receiver domain Daes_3078 PF09308 LuxQ, periplasmic Daes_3078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_3080 PF03061 Thioesterase superfamily Daes_3081 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Daes_3083 PF03749 Sugar fermentation stimulation protein RE domain Daes_3083 PF17746 SfsA N-terminal OB domain Daes_3088 PF00561 alpha/beta hydrolase fold Daes_3091 PF01040 UbiA prenyltransferase family Daes_3092 PF04657 Putative inner membrane exporter, YdcZ Daes_3093 PF01258 Prokaryotic dksA/traR C4-type zinc finger Daes_3094 PF00534 Glycosyl transferases group 1 Daes_3095 PF01548 Transposase Daes_3095 PF02371 Transposase IS116/IS110/IS902 family Daes_3096 PF03477 ATP cone domain Daes_3096 PF00317 Ribonucleotide reductase, all-alpha domain Daes_3096 PF02867 Ribonucleotide reductase, barrel domain Daes_3098 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_3098 PF00512 His Kinase A (phospho-acceptor) domain Daes_3098 PF00672 HAMP domain Daes_3099 PF01209 ubiE/COQ5 methyltransferase family Daes_3101 PF00579 tRNA synthetases class I (W and Y) Daes_3101 PF01479 S4 domain Daes_3102 PF13277 YmdB-like protein Daes_3103 PF03705 CheR methyltransferase, all-alpha domain Daes_3103 PF01739 CheR methyltransferase, SAM binding domain Daes_3104 PF01966 HD domain Daes_3104 PF00013 KH domain Daes_3104 PF12072 Domain of unknown function (DUF3552) Daes_3107 PF00132 Bacterial transferase hexapeptide (six repeats) Daes_3107 PF12804 MobA-like NTP transferase domain Daes_3108 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Daes_3108 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Daes_3109 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Daes_3109 PF02874 ATP synthase alpha/beta family, beta-barrel domain Daes_3110 PF00231 ATP synthase Daes_3111 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Daes_3111 PF00306 ATP synthase alpha/beta chain, C terminal domain Daes_3111 PF02874 ATP synthase alpha/beta family, beta-barrel domain Daes_3112 PF00213 ATP synthase delta (OSCP) subunit Daes_3113 PF00430 ATP synthase B/B' CF(0) Daes_3116 PF01098 Cell cycle protein Daes_3117 PF03717 Penicillin-binding Protein dimerisation domain Daes_3117 PF00905 Penicillin binding protein transpeptidase domain Daes_3122 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Daes_3122 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Daes_3123 PF02629 CoA binding domain Daes_3123 PF06971 Putative DNA-binding protein N-terminus Daes_3124 PF00137 ATP synthase subunit C Daes_3125 PF00119 ATP synthase A chain Daes_3127 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Daes_3129 PF00156 Phosphoribosyl transferase domain Daes_3131 PF00578 AhpC/TSA family Daes_3132 PF02607 B12 binding domain Daes_3132 PF02574 Homocysteine S-methyltransferase Daes_3132 PF02310 B12 binding domain Daes_3132 PF00809 Pterin binding enzyme Daes_3132 PF02965 Vitamin B12 dependent methionine synthase, activation domain Daes_3133 PF04539 Sigma-70 region 3 Daes_3133 PF04545 Sigma-70, region 4 Daes_3133 PF04542 Sigma-70 region 2 Daes_3133 PF00140 Sigma-70 factor, region 1.2 Daes_3137 PF02502 Ribose/Galactose Isomerase Daes_3138 PF00456 Transketolase, thiamine diphosphate binding domain Daes_3138 PF02780 Transketolase, C-terminal domain Daes_3138 PF02779 Transketolase, pyrimidine binding domain Daes_3139 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Daes_3145 PF01029 NusB family Daes_3145 PF01189 16S rRNA methyltransferase RsmB/F Daes_3146 PF00403 Heavy-metal-associated domain Daes_3149 PF00270 DEAD/DEAH box helicase Daes_3149 PF09369 Domain of unknown function (DUF1998) Daes_3149 PF00271 Helicase conserved C-terminal domain Daes_3150 PF00072 Response regulator receiver domain Daes_3154 PF00072 Response regulator receiver domain Daes_3154 PF02954 Bacterial regulatory protein, Fis family Daes_3154 PF00158 Sigma-54 interaction domain Daes_3155 PF01812 5-formyltetrahydrofolate cyclo-ligase family Daes_3157 PF00753 Metallo-beta-lactamase superfamily Daes_3157 PF14863 Alkyl sulfatase dimerisation Daes_3157 PF14864 Alkyl sulfatase C-terminal Daes_3158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_3158 PF00512 His Kinase A (phospho-acceptor) domain Daes_3160 PF04055 Radical SAM superfamily Daes_3160 PF02310 B12 binding domain Daes_3162 PF00216 Bacterial DNA-binding protein Daes_3163 PF01230 HIT domain Daes_3164 PF02719 Polysaccharide biosynthesis protein Daes_3165 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Daes_3167 PF00698 Acyl transferase domain Daes_3168 PF01488 Shikimate / quinate 5-dehydrogenase Daes_3168 PF08501 Shikimate dehydrogenase substrate binding domain Daes_3168 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Daes_3169 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Daes_3171 PF03975 CheD chemotactic sensory transduction Daes_3172 PF00005 ABC transporter Daes_3172 PF00664 ABC transporter transmembrane region Daes_3174 PF01520 N-acetylmuramoyl-L-alanine amidase Daes_3175 PF02219 Methylenetetrahydrofolate reductase Daes_3179 PF10518 TAT (twin-arginine translocation) pathway signal sequence Daes_3179 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Daes_3179 PF00384 Molybdopterin oxidoreductase Daes_3179 PF01568 Molydopterin dinucleotide binding domain Daes_3180 PF13247 4Fe-4S dicluster domain Daes_3180 PF12800 4Fe-4S binding domain Daes_3186 PF02583 Metal-sensitive transcriptional repressor Daes_3187 PF07650 KH domain Daes_3187 PF01926 50S ribosome-binding GTPase Daes_3188 PF02225 PA domain Daes_3188 PF05922 Peptidase inhibitor I9 Daes_3188 PF13860 FlgD Ig-like domain Daes_3188 PF00082 Subtilase family Daes_3190 PF00011 Hsp20/alpha crystallin family Daes_3191 PF00011 Hsp20/alpha crystallin family Daes_3192 PF03966 Trm112p-like protein Daes_3193 PF02811 PHP domain Daes_3195 PF01979 Amidohydrolase family Daes_3196 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Daes_3196 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Daes_3197 PF01979 Amidohydrolase family Daes_3199 PF00403 Heavy-metal-associated domain Daes_3200 PF00072 Response regulator receiver domain Daes_3200 PF00196 Bacterial regulatory proteins, luxR family Daes_3201 PF05384 Sensor protein DegS Daes_3201 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_3201 PF07730 Histidine kinase Daes_3203 PF00571 CBS domain Daes_3204 PF00072 Response regulator receiver domain Daes_3204 PF00486 Transcriptional regulatory protein, C terminal Daes_3206 PF12762 ISXO2-like transposase domain Daes_3213 PF02371 Transposase IS116/IS110/IS902 family Daes_3213 PF01548 Transposase Daes_3214 PF14535 AMP-binding enzyme C-terminal domain Daes_3214 PF00501 AMP-binding enzyme Daes_3220 PF01527 Transposase Daes_3223 PF12762 ISXO2-like transposase domain Daes_3225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_3225 PF00512 His Kinase A (phospho-acceptor) domain Daes_3225 PF00989 PAS fold Daes_3227 PF13581 Histidine kinase-like ATPase domain Daes_3234 PF00005 ABC transporter Daes_3235 PF00528 Binding-protein-dependent transport system inner membrane component Daes_3236 PF00528 Binding-protein-dependent transport system inner membrane component Daes_3238 PF13193 AMP-binding enzyme C-terminal domain Daes_3238 PF00501 AMP-binding enzyme Daes_3247 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Daes_3247 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Daes_3248 PF00111 2Fe-2S iron-sulfur cluster binding domain Daes_3248 PF01799 [2Fe-2S] binding domain Daes_3249 PF03450 CO dehydrogenase flavoprotein C-terminal domain Daes_3249 PF00941 FAD binding domain in molybdopterin dehydrogenase Daes_3250 PF01554 MatE Daes_3256 PF02335 Cytochrome c552 Daes_3257 PF14522 Cytochrome c7 and related cytochrome c Daes_3257 PF03264 NapC/NirT cytochrome c family, N-terminal region Daes_3258 PF00440 Bacterial regulatory proteins, tetR family Daes_3260 PF00873 AcrB/AcrD/AcrF family Daes_3261 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Daes_3262 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Daes_3262 PF07703 Alpha-2-macroglobulin bait region domain Daes_3262 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Daes_3262 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Daes_3262 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain Daes_3262 PF00207 Alpha-2-macroglobulin family Daes_3262 PF07678 A-macroglobulin TED domain Daes_3262 PF17962 Bacterial macroglobulin domain 6 Daes_3262 PF01835 MG2 domain Daes_3263 PF06832 Penicillin-Binding Protein C-terminus Family Daes_3263 PF00912 Transglycosylase Daes_3263 PF00905 Penicillin binding protein transpeptidase domain Daes_3264 PF07694 5TMR of 5TMR-LYT Daes_3264 PF00990 Diguanylate cyclase, GGDEF domain Daes_3265 PF13439 Glycosyltransferase Family 4 Daes_3265 PF00534 Glycosyl transferases group 1 Daes_3269 PF08421 Putative zinc binding domain Daes_3269 PF08484 C-methyltransferase C-terminal domain Daes_3270 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Daes_3271 PF16363 GDP-mannose 4,6 dehydratase Daes_3272 PF00483 Nucleotidyl transferase Daes_3275 PF01370 NAD dependent epimerase/dehydratase family Daes_3277 PF01609 Transposase DDE domain Daes_3277 PF13808 DDE_Tnp_1-associated Daes_3278 PF02540 NAD synthase Daes_3278 PF00795 Carbon-nitrogen hydrolase Daes_3282 PF00578 AhpC/TSA family Daes_3283 PF05193 Peptidase M16 inactive domain Daes_3283 PF08367 Peptidase M16C associated Daes_3283 PF00675 Insulinase (Peptidase family M16) Daes_3284 PF03951 Glutamine synthetase, beta-Grasp domain Daes_3284 PF00120 Glutamine synthetase, catalytic domain Daes_3285 PF00582 Universal stress protein family Daes_3286 PF02397 Bacterial sugar transferase Daes_3289 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Daes_3289 PF02743 Cache domain Daes_3289 PF00672 HAMP domain Daes_3290 PF00924 Mechanosensitive ion channel Daes_3290 PF12795 Mechanosensitive ion channel porin domain Daes_3290 PF12794 Mechanosensitive ion channel inner membrane domain 1 Daes_3291 PF13419 Haloacid dehalogenase-like hydrolase Daes_3292 PF01261 Xylose isomerase-like TIM barrel Daes_3294 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Daes_3295 PF01810 LysE type translocator Daes_3296 PF12762 ISXO2-like transposase domain Daes_3298 PF13847 Methyltransferase domain Daes_3299 PF01078 Magnesium chelatase, subunit ChlI Daes_3299 PF13335 Magnesium chelatase, subunit ChlI C-terminal Daes_3304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Daes_3304 PF03466 LysR substrate binding domain Daes_3309 PF00733 Asparagine synthase Daes_3309 PF13537 Glutamine amidotransferase domain Daes_3313 PF00155 Aminotransferase class I and II Daes_3314 PF00300 Histidine phosphatase superfamily (branch 1) Daes_3315 PF00534 Glycosyl transferases group 1 Daes_3315 PF13439 Glycosyltransferase Family 4 Daes_3316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_3316 PF00989 PAS fold Daes_3316 PF00512 His Kinase A (phospho-acceptor) domain Daes_3318 PF00521 DNA gyrase/topoisomerase IV, subunit A Daes_3318 PF03989 DNA gyrase C-terminal domain, beta-propeller Daes_3319 PF00204 DNA gyrase B Daes_3319 PF01751 Toprim domain Daes_3319 PF00986 DNA gyrase B subunit, carboxyl terminus Daes_3319 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Daes_3321 PF11638 DnaA N-terminal domain Daes_3321 PF08299 Bacterial dnaA protein helix-turn-helix Daes_3321 PF00308 Bacterial dnaA protein Daes_3323 PF01063 Amino-transferase class IV Daes_3324 PF00425 chorismate binding enzyme Daes_3324 PF04715 Anthranilate synthase component I, N terminal region Daes_3325 PF00117 Glutamine amidotransferase class-I Daes_3326 PF00731 AIR carboxylase Daes_3327 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Daes_3327 PF02843 Phosphoribosylglycinamide synthetase, C domain Daes_3327 PF02844 Phosphoribosylglycinamide synthetase, N domain Daes_3331 PF12762 ISXO2-like transposase domain Daes_3332 PF01527 Transposase Daes_3333 PF13276 HTH-like domain Daes_3333 PF13683 Integrase core domain Daes_3336 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Daes_3336 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Daes_3336 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Daes_3338 PF02547 Queuosine biosynthesis protein Daes_3341 PF04127 DNA / pantothenate metabolism flavoprotein Daes_3341 PF02441 Flavoprotein Daes_3344 PF01145 SPFH domain / Band 7 family Daes_3345 PF01370 NAD dependent epimerase/dehydratase family