locus-tag	class	description
EJA96_00030	COG0582	viral genome integration into host DNA
EJA96_00075	COG0745	RESPONSE REGULATOR receiver
EJA96_00085	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
EJA96_00100	COG0583	DNA-binding transcription factor activity
EJA96_00125	COG0501	Belongs to the peptidase M48B family
EJA96_00145	COG4208	sulfate ABC transporter
EJA96_00155	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
EJA96_00190	COG3706	GGDEF domain
EJA96_00215	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
EJA96_00220	COG0174	glutamine synthetase
EJA96_00225	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
EJA96_00230	COG0174	glutamine synthetase
EJA96_00250	COG3842	ATPase activity
EJA96_00255	COG1176	ABC-type spermidine putrescine transport system, permease component I
EJA96_00260	COG1177	transmembrane transport
EJA96_00330	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
EJA96_00335	COG0277	FAD linked oxidase domain protein
EJA96_00340	COG0179	Fumarylacetoacetate (FAA) hydrolase
EJA96_00350	COG3111	PFAM Bacterial OB fold (BOF) protein
EJA96_00360	COG0531	amino acid
EJA96_00365	COG2182	Extracellular solute-binding protein
EJA96_00370	COG1177	transmembrane transport
EJA96_00375	COG1176	ABC-type spermidine putrescine transport system, permease component I
EJA96_00390	COG3204	pilus organization
EJA96_00395	COG2234	aminopeptidase activity
EJA96_00415	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
EJA96_00460	COG3706	GGDEF domain
EJA96_00470	COG0730	response to heat
EJA96_00505	COG0584	glycerophosphoryl diester phosphodiesterase
EJA96_00525	COG0622	Phosphoesterase
EJA96_00530	COG2233	PERMEase
EJA96_00545	COG0693	protein deglycase activity
EJA96_00585	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
EJA96_00595	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
EJA96_00630	COG0742	ribosomal rna small subunit methyltransferase
EJA96_00635	COG0612	Peptidase, M16
EJA96_00640	COG0612	Peptidase, M16
EJA96_00645	COG0552	protein localization to endoplasmic reticulum
EJA96_00650	COG2884	Cell division ATP-binding protein ftsE
EJA96_00655	COG2177	Part of the ABC transporter FtsEX involved in
EJA96_00675	COG2363	Small membrane protein
EJA96_00710	COG0635	Involved in the biosynthesis of porphyrin-containing compound
EJA96_00725	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
EJA96_00725	COG2813	Specifically methylates the guanine in position
EJA96_00735	COG1160	GTP binding
EJA96_00740	COG1872	DUF167
EJA96_00785	COG0626	cystathionine gamma-synthase activity
EJA96_00880	COG1385	rRNA (uridine-N3-)-methyltransferase activity
EJA96_00900	COG3038	cytochrome b561
EJA96_00940	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
EJA96_00945	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
EJA96_00970	COG1309	transcriptional regulator
EJA96_00975	COG0402	S-adenosylhomocysteine deaminase activity
EJA96_00980	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
EJA96_01015	COG1953	Uracil, thiamine, allantoin
EJA96_01030	COG1960	acyl-CoA dehydrogenase activity
EJA96_01035	COG0583	DNA-binding transcription factor activity
EJA96_01045	COG0306	phosphate transporter
EJA96_01055	COG0330	HflC and HflK could
EJA96_01065	COG1289	transmembrane transporter activity
EJA96_01070	COG0513	Belongs to the DEAD box helicase family
EJA96_01080	COG0189	ligase activity
EJA96_01080	COG4067	protein conserved in archaea
EJA96_01085	COG0477	Major facilitator Superfamily
EJA96_01095	COG0542	response to heat
EJA96_01110	COG0204	Acyl-transferase
EJA96_01120	COG0745	RESPONSE REGULATOR receiver
EJA96_01130	COG4452	Inner membrane protein CreD
EJA96_01165	COG4774	siderophore transport
EJA96_01170	COG3712	iron ion homeostasis
EJA96_01175	COG1595	DNA-templated transcription, initiation
EJA96_01180	COG0625	glutathione transferase activity
EJA96_01190	COG1309	transcriptional regulator
EJA96_01195	COG1953	Uracil, thiamine, allantoin
EJA96_01215	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
EJA96_01250	COG2005	Transcriptional regulator
EJA96_01250	COG3585	molybdate ion transport
EJA96_01255	COG5544	Lipoprotein
EJA96_01260	COG1040	competence protein
EJA96_01280	COG0511	ligase activity, forming carbon-carbon bonds
EJA96_01295	COG1984	allophanate hydrolase subunit 2
EJA96_01315	COG2226	methyltransferase
EJA96_01315	COG1073	alpha beta
EJA96_01335	COG1960	acyl-CoA dehydrogenase activity
EJA96_01340	COG1960	acyl-CoA dehydrogenase activity
EJA96_01350	COG1960	acyl-CoA dehydrogenase activity
EJA96_01360	COG1648	precorrin-2 dehydrogenase activity
EJA96_01360	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
EJA96_01445	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
EJA96_01450	COG0583	DNA-binding transcription factor activity
EJA96_01455	COG2258	MOSC domain
EJA96_01490	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EJA96_01500	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
EJA96_01555	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
EJA96_01560	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
EJA96_01570	COG3622	Belongs to the hyi family
EJA96_01575	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
EJA96_01615	COG2081	HI0933 family
EJA96_01620	COG1451	nucleotide metabolic process
EJA96_01625	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
EJA96_01630	COG3152	Membrane
EJA96_01635	COG1917	Cupin 2, conserved barrel domain protein
EJA96_01635	COG4977	sequence-specific DNA binding
EJA96_01640	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
EJA96_01705	COG3344	reverse transcriptase
EJA96_01730	COG0828	Belongs to the bacterial ribosomal protein bS21 family
EJA96_01745	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
EJA96_01765	COG2719	SpoVR family
EJA96_01775	COG2766	serine protein kinase
EJA96_01820	COG3344	reverse transcriptase
EJA96_01840	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
EJA96_01855	COG2197	response regulator
EJA96_01865	COG3842	ATPase activity
EJA96_01875	COG1176	ABC-type spermidine putrescine transport system, permease component I
EJA96_01885	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
EJA96_01910	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
EJA96_01995	COG3179	chitinase
EJA96_02030	COG1765	OsmC-like protein
EJA96_02045	COG0537	adenosine 5'-monophosphoramidase activity
EJA96_02100	COG0739	heme binding
EJA96_02135	COG2995	paraquat-inducible protein a
EJA96_02140	COG2995	paraquat-inducible protein a
EJA96_02145	COG3008	intermembrane lipid transfer
EJA96_02150	COG1178	ABC-type Fe3 transport system permease component
EJA96_02155	COG1840	ABC-type Fe3 transport system, periplasmic component
EJA96_02200	COG0456	acetyltransferase
EJA96_02210	COG0288	reversible hydration of carbon dioxide
EJA96_02225	COG3549	Plasmid maintenance system killer
EJA96_02240	COG0012	GTP binding
EJA96_02295	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
EJA96_02315	COG0789	Transcriptional regulator
EJA96_02325	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
EJA96_02330	COG1090	epimerase
EJA96_02445	COG1285	pathogenesis
EJA96_02450	COG2135	peptidase activity
EJA96_02455	COG0840	transmembrane signaling receptor activity
EJA96_02460	COG0501	Belongs to the peptidase M48B family
EJA96_02475	COG2119	membrane
EJA96_02480	COG0833	amino acid
EJA96_02490	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
EJA96_02530	COG2010	Cytochrome c
EJA96_02605	COG1966	Carbon starvation protein
EJA96_02610	COG2879	small protein
EJA96_02615	COG0523	cobalamin synthesis protein
EJA96_02640	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EJA96_02645	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EJA96_02665	COG0488	(ABC) transporter
EJA96_02670	COG0577	efflux transmembrane transporter activity
EJA96_02670	COG1136	(ABC) transporter
EJA96_02675	COG1136	(ABC) transporter
EJA96_02675	COG0577	efflux transmembrane transporter activity
EJA96_02700	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
EJA96_02720	COG3541	Predicted nucleotidyltransferase
EJA96_02725	COG1690	Belongs to the RtcB family
EJA96_02740	COG4650	regulator
EJA96_02765	COG1067	ATP-dependent peptidase activity
EJA96_02785	COG0545	Peptidyl-prolyl cis-trans isomerase
EJA96_02800	COG0142	geranyltranstransferase activity
EJA96_02825	COG3045	CreA protein
EJA96_02840	COG0196	riboflavin kinase activity
EJA96_02855	COG1047	Peptidyl-prolyl cis-trans
EJA96_02865	COG4968	Prepilin-type N-terminal cleavage methylation domain
EJA96_02960	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
EJA96_02970	COG3328	transposase activity
EJA96_02985	COG3668	Plasmid stabilization system
EJA96_02990	COG3609	addiction module antidote protein, CC2985 family
EJA96_03100	COG1074	ATP-dependent DNA helicase activity
EJA96_03265	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
EJA96_03290	COG3657	addiction module killer protein
EJA96_03295	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
EJA96_03305	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
EJA96_03320	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
EJA96_03440	COG0305	Participates in initiation and elongation during chromosome replication
EJA96_03480	COG1192	Involved in chromosome partitioning
EJA96_03490	COG2831	hemolysin activation secretion protein
EJA96_03495	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
EJA96_03500	COG1252	NADH dehydrogenase
EJA96_03565	COG4969	Belongs to the N-Me-Phe pilin family
EJA96_03605	COG0019	diaminopimelate decarboxylase activity
EJA96_03615	COG2194	sulfuric ester hydrolase activity
EJA96_03630	COG4774	siderophore transport
EJA96_03655	COG1984	allophanate hydrolase subunit 2
EJA96_03660	COG1522	sequence-specific DNA binding
EJA96_03670	COG4608	Belongs to the ABC transporter superfamily
EJA96_03675	COG0444	Belongs to the ABC transporter superfamily
EJA96_03680	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
EJA96_03685	COG0601	transmembrane transport
EJA96_03690	COG0747	negative chemotaxis
EJA96_03705	COG0747	negative chemotaxis
EJA96_03720	COG0747	negative chemotaxis
EJA96_03725	COG0747	negative chemotaxis
EJA96_03740	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
EJA96_03745	COG4676	Protein conserved in bacteria
EJA96_03750	COG4685	Uncharacterized protein conserved in bacteria (DUF2138)
EJA96_03765	COG5445	Predicted secreted protein (DUF2300)
EJA96_03770	COG4676	Protein conserved in bacteria
EJA96_03775	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
EJA96_03780	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
EJA96_03800	COG1077	Cell shape determining protein MreB Mrl
EJA96_03820	COG1530	ribonuclease E activity
EJA96_03835	COG0312	modulator of DNA gyrase
EJA96_03845	COG0312	modulator of DNA gyrase
EJA96_03900	COG1137	ATPase activity
EJA96_03915	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
EJA96_03925	COG1127	ABC transporter
EJA96_03930	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
EJA96_03935	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
EJA96_03975	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
EJA96_03985	COG2951	lytic endotransglycosylase activity
EJA96_04005	COG2945	thiolester hydrolase activity
EJA96_04015	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
EJA96_04030	COG1960	acyl-CoA dehydrogenase activity
EJA96_04035	COG0667	Aldo Keto reductase
EJA96_04050	COG0723	plastoquinol--plastocyanin reductase activity
EJA96_04055	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
EJA96_04060	COG2857	Cytochrome c1
EJA96_04065	COG0625	glutathione transferase activity
EJA96_04070	COG2969	positive regulation of protein catabolic process
EJA96_04075	COG2823	Periplasmic or secreted lipoprotein
EJA96_04090	COG3107	peptidoglycan biosynthetic process
EJA96_04130	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
EJA96_04145	COG0772	Belongs to the SEDS family
EJA96_04190	COG0739	heme binding
EJA96_04190	COG0741	lytic transglycosylase activity
EJA96_04190	COG1196	nuclear chromosome segregation
EJA96_04215	COG0494	nUDIX hydrolase
EJA96_04220	COG2096	Adenosyltransferase
EJA96_04245	COG0668	transmembrane transport
EJA96_04270	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_04280	COG3030	protein affecting phage T7 exclusion by the F plasmid
EJA96_04315	COG0745	RESPONSE REGULATOR receiver
EJA96_04320	COG2205	protein histidine kinase activity
EJA96_04330	COG3642	lipopolysaccharide core region biosynthetic process
EJA96_04345	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EJA96_04350	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EJA96_04375	COG1704	LemA family
EJA96_04415	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
EJA96_04430	COG1918	ferrous iron import across plasma membrane
EJA96_04445	COG1902	pentaerythritol trinitrate reductase activity
EJA96_04450	COG2814	Major facilitator Superfamily
EJA96_04465	COG0589	response to stress
EJA96_04485	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
EJA96_04485	COG0426	domain, Protein
EJA96_04490	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
EJA96_04505	COG1473	amidohydrolase
EJA96_04530	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
EJA96_04545	COG0693	protein deglycase activity
EJA96_04565	COG3706	GGDEF domain
EJA96_04575	COG1024	Enoyl-CoA hydratase
EJA96_04585	COG0589	response to stress
EJA96_04615	COG0714	Associated with various cellular activities
EJA96_04645	COG2925	Exonuclease
EJA96_04655	COG0788	formyltetrahydrofolate deformylase activity
EJA96_04695	COG0433	COG0433 Predicted ATPase
EJA96_04715	COG4964	Belongs to the GSP D family
EJA96_04755	COG4566	intracellular signal transduction
EJA96_04775	COG0306	phosphate transporter
EJA96_04785	COG0840	transmembrane signaling receptor activity
EJA96_04800	COG0697	spore germination
EJA96_04805	COG0095	Lipoate-protein ligase
EJA96_04820	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
EJA96_04830	COG0420	3'-5' exonuclease activity
EJA96_04970	COG2831	hemolysin activation secretion protein
EJA96_05005	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EJA96_05015	COG0583	DNA-binding transcription factor activity
EJA96_05030	COG0477	Major facilitator Superfamily
EJA96_05035	COG0154	amidase activity
EJA96_05045	COG0463	Glycosyl transferase, family 2
EJA96_05060	COG0583	DNA-binding transcription factor activity
EJA96_05150	COG4128	Pfam Zonular occludens toxin
EJA96_05160	COG4974	Belongs to the 'phage' integrase family
EJA96_05240	COG2015	COG2015, Alkyl sulfatase and related hydrolases
EJA96_05245	COG2910	NAD(P)H-binding
EJA96_05285	COG2720	vancomycin resistance protein
EJA96_05375	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
EJA96_05440	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
EJA96_05450	COG4206	TonB-dependent receptor
EJA96_05460	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
EJA96_05465	COG0583	DNA-binding transcription factor activity
EJA96_05475	COG2076	Multidrug Resistance protein
EJA96_05495	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
EJA96_05500	COG1113	amino acid transport
EJA96_05515	COG2079	MmgE PrpD family protein
EJA96_05530	COG0372	Belongs to the citrate synthase family
EJA96_05540	COG1802	Transcriptional regulator
EJA96_05550	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
EJA96_05575	COG0656	L-ascorbic acid biosynthetic process
EJA96_05590	COG3023	N-Acetylmuramoyl-L-alanine amidase
EJA96_05605	COG0546	phosphoglycolate phosphatase activity
EJA96_05705	COG2267	carboxylic ester hydrolase activity
EJA96_05720	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
EJA96_05725	COG2885	chlorophyll binding
EJA96_05730	COG0204	Acyl-transferase
EJA96_05755	COG0386	Belongs to the glutathione peroxidase family
EJA96_05760	COG1309	transcriptional regulator
EJA96_05770	COG1307	EDD domain protein, DegV family
EJA96_05800	COG5001	Diguanylate cyclase
EJA96_05800	COG5002	protein histidine kinase activity
EJA96_05800	COG3447	MASE1 domain protein
EJA96_05805	COG0450	alkyl hydroperoxide reductase
EJA96_05810	COG0492	ferredoxin-NADP+ reductase activity
EJA96_05850	COG0271	Belongs to the BolA IbaG family
EJA96_05865	COG1132	(ABC) transporter
EJA96_05870	COG5001	Diguanylate cyclase
EJA96_05870	COG5002	protein histidine kinase activity
EJA96_05880	COG3321	synthase
EJA96_05880	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_05880	COG0604	alcohol dehydrogenase
EJA96_05905	COG1113	amino acid transport
EJA96_05940	COG3283	Transcriptional regulator of aromatic amino acids metabolism
EJA96_05965	COG0583	DNA-binding transcription factor activity
EJA96_05970	COG0583	DNA-binding transcription factor activity
EJA96_05975	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
EJA96_05980	COG1960	acyl-CoA dehydrogenase activity
EJA96_05990	COG2079	MmgE PrpD family protein
EJA96_06000	COG2301	Belongs to the HpcH HpaI aldolase family
EJA96_06030	COG4215	(ABC) transporter
EJA96_06095	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
EJA96_06165	COG2239	Acts as a magnesium transporter
EJA96_06175	COG4807	Protein conserved in bacteria
EJA96_06195	COG3038	cytochrome b561
EJA96_06245	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
EJA96_06250	COG0784	Response regulator, receiver
EJA96_06250	COG2205	protein histidine kinase activity
EJA96_06250	COG5002	protein histidine kinase activity
EJA96_06280	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
EJA96_06285	COG3956	TIGRFAM MazG family protein
EJA96_06295	COG3122	Protein conserved in bacteria
EJA96_06335	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
EJA96_06355	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
EJA96_06390	COG3118	belongs to the thioredoxin family
EJA96_06435	COG0783	Belongs to the Dps family
EJA96_06465	COG0824	Thioesterase
EJA96_06495	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
EJA96_06500	COG0602	queuosine metabolic process
EJA96_06520	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
EJA96_06530	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
EJA96_06540	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
EJA96_06545	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
EJA96_06555	COG0235	Class ii aldolase
EJA96_06565	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_06570	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_06580	COG0475	glutathione-regulated potassium exporter activity
EJA96_06580	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
EJA96_06670	COG3188	usher protein
EJA96_06675	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
EJA96_06715	COG0583	DNA-binding transcription factor activity
EJA96_06725	COG4783	chaperone-mediated protein folding
EJA96_06730	COG0425	Belongs to the sulfur carrier protein TusA family
EJA96_06740	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
EJA96_06755	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
EJA96_06760	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
EJA96_06790	COG0183	Belongs to the thiolase family
EJA96_06800	COG2030	dehydratase
EJA96_06805	COG2814	Major facilitator Superfamily
EJA96_06815	COG1960	acyl-CoA dehydrogenase activity
EJA96_06820	COG1024	Enoyl-CoA hydratase
EJA96_06825	COG1960	acyl-CoA dehydrogenase activity
EJA96_06830	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_06855	COG1012	belongs to the aldehyde dehydrogenase family
EJA96_06860	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EJA96_06885	COG0625	glutathione transferase activity
EJA96_06890	COG0653	protein targeting
EJA96_06905	COG2860	membrane
EJA96_06945	COG1199	ATP-dependent helicase activity
EJA96_06960	COG2885	chlorophyll binding
EJA96_06970	COG3835	regulator
EJA96_06975	COG2610	gluconate transmembrane transporter activity
EJA96_06980	COG1929	Belongs to the glycerate kinase type-1 family
EJA96_06990	COG3133	Outer membrane lipoprotein
EJA96_07000	COG1006	Multisubunit Na H antiporter MnhC subunit
EJA96_07005	COG0651	ATP synthesis coupled electron transport
EJA96_07015	COG2212	antiporter activity
EJA96_07030	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
EJA96_07050	COG3189	MarR family transcriptional regulator
EJA96_07065	COG0326	Molecular chaperone. Has ATPase activity
EJA96_07115	COG1815	bacterial-type flagellum-dependent cell motility
EJA96_07120	COG1558	bacterial-type flagellum-dependent cell motility
EJA96_07125	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
EJA96_07130	COG1749	Flagellar hook protein flgE
EJA96_07135	COG4787	bacterial-type flagellum-dependent cell motility
EJA96_07140	COG4786	Flagellar basal body rod
EJA96_07160	COG1256	bacterial-type flagellum assembly
EJA96_07180	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
EJA96_07185	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_07210	COG0438	transferase activity, transferring glycosyl groups
EJA96_07210	COG1216	Glycosyl transferase, family 2
EJA96_07215	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
EJA96_07225	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
EJA96_07230	COG1516	flagellar protein fliS
EJA96_07245	COG2204	response regulator
EJA96_07250	COG4191	Histidine kinase
EJA96_07255	COG2204	response regulator
EJA96_07285	COG2882	bacterial-type flagellum organization
EJA96_07305	COG2207	Transcriptional regulator
EJA96_07320	COG2133	pyrroloquinoline quinone binding
EJA96_07325	COG4628	conserved protein (DUF2132)
EJA96_07340	COG1132	(ABC) transporter
EJA96_07370	COG2885	chlorophyll binding
EJA96_07375	COG2199	diguanylate cyclase activity
EJA96_07385	COG0242	peptide deformylase activity
EJA96_07415	COG0667	Aldo Keto reductase
EJA96_07420	COG0583	DNA-binding transcription factor activity
EJA96_07460	COG2197	response regulator
EJA96_07480	COG3257	ureidoglycine aminohydrolase activity
EJA96_07485	COG0583	DNA-binding transcription factor activity
EJA96_07495	COG0560	Phosphoserine phosphatase
EJA96_07515	COG0531	amino acid
EJA96_07555	COG1943	Transposase
EJA96_07560	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
EJA96_07565	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
EJA96_07565	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
EJA96_07570	COG0745	RESPONSE REGULATOR receiver
EJA96_07575	COG2205	protein histidine kinase activity
EJA96_07590	COG2226	methyltransferase
EJA96_07605	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
EJA96_07610	COG2977	Belongs to the P-Pant transferase superfamily
EJA96_07630	COG0753	catalase activity
EJA96_07635	COG0861	Integral membrane protein TerC family
EJA96_07640	COG2951	lytic endotransglycosylase activity
EJA96_07645	COG3005	denitrification pathway
EJA96_07650	COG3043	anaerobic respiration
EJA96_07660	COG3062	negative regulation of establishment of protein localization
EJA96_07670	COG4459	periplasmic nitrate reductase
EJA96_07680	COG0745	RESPONSE REGULATOR receiver
EJA96_07690	COG5001	Diguanylate cyclase
EJA96_07690	COG5002	protein histidine kinase activity
EJA96_07690	COG3447	MASE1 domain protein
EJA96_07715	COG0625	glutathione transferase activity
EJA96_07725	COG1960	acyl-CoA dehydrogenase activity
EJA96_07730	COG1804	L-carnitine dehydratase bile acid-inducible protein F
EJA96_07755	COG2818	Glycosylase
EJA96_07770	COG3829	transcription factor binding
EJA96_07780	COG0791	NLP P60 protein
EJA96_07785	COG0791	NLP P60 protein
EJA96_07795	COG0583	DNA-binding transcription factor activity
EJA96_07800	COG1335	isochorismatase
EJA96_07850	COG2211	Major facilitator Superfamily
EJA96_07865	COG0318	PFAM AMP-dependent synthetase and ligase
EJA96_07875	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
EJA96_07900	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
EJA96_07910	COG0583	DNA-binding transcription factor activity
EJA96_07930	COG2957	Belongs to the agmatine deiminase family
EJA96_07935	COG2249	NAD(P)H dehydrogenase (quinone) activity
EJA96_07955	COG2207	Transcriptional regulator
EJA96_07985	COG2207	Transcriptional regulator
EJA96_08025	COG4191	Histidine kinase
EJA96_08025	COG0784	Response regulator, receiver
EJA96_08090	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EJA96_08100	COG1126	abc transporter atp-binding protein
EJA96_08110	COG0765	amino acid transport
EJA96_08130	COG0477	Major facilitator Superfamily
EJA96_08165	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EJA96_08175	COG1802	Transcriptional regulator
EJA96_08185	COG4206	TonB-dependent receptor
EJA96_08200	COG0778	Nitroreductase
EJA96_08250	COG1960	acyl-CoA dehydrogenase activity
EJA96_08310	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
EJA96_08315	COG1230	cation diffusion facilitator family transporter
EJA96_08330	COG1595	DNA-templated transcription, initiation
EJA96_08335	COG3712	iron ion homeostasis
EJA96_08365	COG0121	glutamine amidotransferase
EJA96_08375	COG0583	DNA-binding transcription factor activity
EJA96_08445	COG4774	siderophore transport
EJA96_08460	COG4319	ketosteroid isomerase
EJA96_08465	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
EJA96_08470	COG1864	DNA RNA non-specific endonuclease
EJA96_08470	COG3591	Belongs to the peptidase S1B family
EJA96_08475	COG0583	DNA-binding transcription factor activity
EJA96_08485	COG0300	oxidoreductase activity
EJA96_08490	COG1253	flavin adenine dinucleotide binding
EJA96_08535	COG1126	abc transporter atp-binding protein
EJA96_08540	COG0765	amino acid transport
EJA96_08545	COG0765	amino acid transport
EJA96_08560	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_08565	COG0189	ligase activity
EJA96_08575	COG2197	response regulator
EJA96_08585	COG3795	YCII-related domain
EJA96_08600	COG2814	Major facilitator Superfamily
EJA96_08610	COG3795	YCII-related domain
EJA96_08625	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
EJA96_08640	COG5006	permease, DMT superfamily
EJA96_08670	COG0384	phenazine biosynthesis protein PhzF
EJA96_08690	COG1733	regulation of RNA biosynthetic process
EJA96_08705	COG1247	-acetyltransferase
EJA96_08715	COG4221	oxidoreductase activity
EJA96_08720	COG2207	Transcriptional regulator
EJA96_08730	COG1450	Type ii and iii secretion system protein
EJA96_08740	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
EJA96_08765	COG0438	transferase activity, transferring glycosyl groups
EJA96_08770	COG0463	Glycosyl transferase, family 2
EJA96_08775	COG0438	transferase activity, transferring glycosyl groups
EJA96_08820	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
EJA96_08855	COG0116	Belongs to the methyltransferase superfamily
EJA96_08855	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
EJA96_08875	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
EJA96_08890	COG0583	DNA-binding transcription factor activity
EJA96_08990	COG3300	MHYT domain
EJA96_08990	COG5001	Diguanylate cyclase
EJA96_09000	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EJA96_09005	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EJA96_09020	COG2832	Protein of unknown function (DUF454)
EJA96_09060	COG1987	bacterial-type flagellum assembly
EJA96_09080	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
EJA96_09085	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
EJA96_09095	COG0455	bacterial-type flagellum organization
EJA96_09125	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
EJA96_09130	COG1360	Flagellar Motor Protein
EJA96_09135	COG1192	Involved in chromosome partitioning
EJA96_09145	COG0835	chemotaxis
EJA96_09175	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_09185	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
EJA96_09245	COG2197	response regulator
EJA96_09260	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
EJA96_09280	COG3192	ethanolamine utilization protein
EJA96_09290	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
EJA96_09305	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
EJA96_09315	COG0469	pyruvate kinase activity
EJA96_09325	COG2084	Dehydrogenase
EJA96_09330	COG3622	Belongs to the hyi family
EJA96_09335	COG3960	tartronate-semialdehyde synthase activity
EJA96_09345	COG1309	transcriptional regulator
EJA96_09360	COG2233	PERMEase
EJA96_09380	COG3501	Rhs element vgr protein
EJA96_09420	COG2252	PERMEase
EJA96_09435	COG0402	S-adenosylhomocysteine deaminase activity
EJA96_09510	COG1960	acyl-CoA dehydrogenase activity
EJA96_09540	COG2076	Multidrug Resistance protein
EJA96_09590	COG0348	domain, Protein
EJA96_09600	COG2010	Cytochrome c
EJA96_09615	COG3278	Belongs to the heme-copper respiratory oxidase family
EJA96_09620	COG2010	Cytochrome c
EJA96_09635	COG3278	Belongs to the heme-copper respiratory oxidase family
EJA96_09650	COG0840	transmembrane signaling receptor activity
EJA96_09670	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EJA96_09675	COG0174	glutamine synthetase
EJA96_09685	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EJA96_09690	COG0251	oxidation-reduction process
EJA96_09720	COG3738	Protein conserved in bacteria
EJA96_09765	COG4804	nuclease activity
EJA96_09770	COG2003	Belongs to the UPF0758 family
EJA96_09805	COG5489	Protein of unknown function (DUF736)
EJA96_09880	COG1127	ABC transporter
EJA96_09885	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
EJA96_09920	COG0583	DNA-binding transcription factor activity
EJA96_09930	COG2076	Multidrug Resistance protein
EJA96_09960	COG4962	Type ii secretion system protein e
EJA96_09965	COG3838	Conjugal transfer protein Trbc
EJA96_09975	COG3451	type IV secretory pathway VirB4
EJA96_10020	COG2009	succinate dehydrogenase
EJA96_10025	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
EJA96_10030	COG1053	succinate dehydrogenase
EJA96_10035	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
EJA96_10110	COG2207	Transcriptional regulator
EJA96_10120	COG2010	Cytochrome c
EJA96_10120	COG1529	Aldehyde oxidase and xanthine dehydrogenase
EJA96_10130	COG1846	Transcriptional regulator
EJA96_10170	COG5002	protein histidine kinase activity
EJA96_10170	COG2205	protein histidine kinase activity
EJA96_10170	COG0784	Response regulator, receiver
EJA96_10200	COG1022	Amp-dependent synthetase and ligase
EJA96_10230	COG0625	glutathione transferase activity
EJA96_10240	COG0628	permease
EJA96_10245	COG2807	transmembrane transport
EJA96_10250	COG2186	Transcriptional regulator
EJA96_10260	COG1024	Enoyl-CoA hydratase
EJA96_10270	COG1960	acyl-CoA dehydrogenase activity
EJA96_10300	COG0745	RESPONSE REGULATOR receiver
EJA96_10340	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
EJA96_10350	COG0840	transmembrane signaling receptor activity
EJA96_10365	COG2130	NADP-dependent
EJA96_10380	COG3135	benzoate transporter
EJA96_10395	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EJA96_10400	COG0625	glutathione transferase activity
EJA96_10410	COG3209	COG3209 Rhs family protein
EJA96_10470	COG2204	response regulator
EJA96_10505	COG0631	protein serine/threonine phosphatase activity
EJA96_10610	COG4792	protein secretion
EJA96_10615	COG4791	protein targeting
EJA96_10620	COG4794	Type iii secretion
EJA96_10625	COG4790	Type iii secretion
EJA96_10680	COG4789	Type iii secretion
EJA96_10790	COG1317	bacterial-type flagellum organization
EJA96_10820	COG2308	Evidence 4 Homologs of previously reported genes of
EJA96_10830	COG1305	Transglutaminase-like
EJA96_10850	COG0183	Belongs to the thiolase family
EJA96_10865	COG0667	Aldo Keto reductase
EJA96_10880	COG0519	Catalyzes the synthesis of GMP from XMP
EJA96_10920	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
EJA96_10935	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
EJA96_10970	COG2909	trisaccharide binding
EJA96_10975	COG2909	trisaccharide binding
EJA96_11020	COG4067	protein conserved in archaea
EJA96_11020	COG0189	ligase activity
EJA96_11060	COG0668	transmembrane transport
EJA96_11080	COG0243	molybdopterin cofactor binding
EJA96_11085	COG2146	nitrite reductase [NAD(P)H] activity
EJA96_11090	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
EJA96_11095	COG0515	serine threonine protein kinase
EJA96_11100	COG2223	nitrite transmembrane transporter activity
EJA96_11110	COG2201	protein-glutamate methylesterase activity
EJA96_11135	COG0589	response to stress
EJA96_11155	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
EJA96_11200	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
EJA96_11205	COG2205	protein histidine kinase activity
EJA96_11210	COG0745	RESPONSE REGULATOR receiver
EJA96_11235	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
EJA96_11250	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EJA96_11260	COG4172	Belongs to the ABC transporter superfamily
EJA96_11265	COG4239	(ABC) transporter, permease
EJA96_11270	COG4174	ABC transporter (Permease)
EJA96_11275	COG4166	transmembrane transport
EJA96_11280	COG4166	transmembrane transport
EJA96_11285	COG1388	LysM domain
EJA96_11285	COG0741	lytic transglycosylase activity
EJA96_11305	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
EJA96_11315	COG1982	Orn Lys Arg decarboxylase major
EJA96_11320	COG0531	amino acid
EJA96_11330	COG1024	Enoyl-CoA hydratase
EJA96_11355	COG0583	DNA-binding transcription factor activity
EJA96_11360	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_11365	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_11385	COG0616	signal peptide processing
EJA96_11390	COG0604	alcohol dehydrogenase
EJA96_11415	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
EJA96_11480	COG3813	Protein conserved in bacteria
EJA96_11485	COG4977	sequence-specific DNA binding
EJA96_11490	COG4251	negative regulation of phosphorylation
EJA96_11490	COG5001	Diguanylate cyclase
EJA96_11490	COG2203	Gaf domain
EJA96_11490	COG3706	GGDEF domain
EJA96_11505	COG2239	Acts as a magnesium transporter
EJA96_11515	COG3278	Belongs to the heme-copper respiratory oxidase family
EJA96_11520	COG2354	Protein conserved in bacteria
EJA96_11525	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
EJA96_11535	COG0583	DNA-binding transcription factor activity
EJA96_11540	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
EJA96_11560	COG1309	transcriptional regulator
EJA96_11630	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EJA96_11675	COG0417	DNA replication proofreading
EJA96_11695	COG0625	glutathione transferase activity
EJA96_11710	COG2366	antibiotic biosynthetic process
EJA96_11735	COG2197	response regulator
EJA96_11810	COG1595	DNA-templated transcription, initiation
EJA96_11845	COG0579	oxidoreductase
EJA96_11860	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
EJA96_11860	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
EJA96_11890	COG1944	ATP diphosphatase activity
EJA96_11915	COG2080	2 iron, 2 sulfur cluster binding
EJA96_11920	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
EJA96_11925	COG1529	Aldehyde oxidase and xanthine dehydrogenase
EJA96_11945	COG0753	catalase activity
EJA96_11950	COG2010	Cytochrome c
EJA96_11970	COG2204	response regulator
EJA96_11975	COG1879	ABC-type sugar transport system periplasmic component
EJA96_11985	COG1172	Belongs to the binding-protein-dependent transport system permease family
EJA96_11990	COG1609	Transcriptional regulator
EJA96_12045	COG1278	Cold shock
EJA96_12050	COG0583	DNA-binding transcription factor activity
EJA96_12065	COG0488	(ABC) transporter
EJA96_12110	COG2194	sulfuric ester hydrolase activity
EJA96_12170	COG1012	belongs to the aldehyde dehydrogenase family
EJA96_12210	COG2205	protein histidine kinase activity
EJA96_12230	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EJA96_12235	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
EJA96_12240	COG0583	DNA-binding transcription factor activity
EJA96_12245	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
EJA96_12260	COG2031	fatty acid transporter
EJA96_12265	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_12270	COG2610	gluconate transmembrane transporter activity
EJA96_12275	COG3829	transcription factor binding
EJA96_12275	COG3290	protein histidine kinase activity
EJA96_12280	COG2271	Major facilitator Superfamily
EJA96_12290	COG0179	Fumarylacetoacetate (FAA) hydrolase
EJA96_12320	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
EJA96_12325	COG1960	acyl-CoA dehydrogenase activity
EJA96_12330	COG0789	Transcriptional regulator
EJA96_12335	COG3204	pilus organization
EJA96_12345	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EJA96_12355	COG1309	transcriptional regulator
EJA96_12395	COG1522	sequence-specific DNA binding
EJA96_12415	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EJA96_12455	COG0174	glutamine synthetase
EJA96_12460	COG0531	amino acid
EJA96_12475	COG0564	pseudouridine synthase activity
EJA96_12495	COG2207	Transcriptional regulator
EJA96_12510	COG1595	DNA-templated transcription, initiation
EJA96_12530	COG0583	DNA-binding transcription factor activity
EJA96_12550	COG4771	TonB-dependent receptor
EJA96_12560	COG4174	ABC transporter (Permease)
EJA96_12565	COG4239	(ABC) transporter, permease
EJA96_12575	COG1104	cysteine desulfurase activity
EJA96_12605	COG2814	Major facilitator Superfamily
EJA96_12610	COG2192	nodulation
EJA96_12630	COG5001	Diguanylate cyclase
EJA96_12635	COG3153	acetyltransferase
EJA96_12635	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
EJA96_12670	COG1113	amino acid transport
EJA96_12690	COG1522	sequence-specific DNA binding
EJA96_12700	COG0367	asparagine synthase
EJA96_12705	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
EJA96_12710	COG0596	Alpha beta hydrolase
EJA96_12730	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EJA96_12775	COG0300	oxidoreductase activity
EJA96_12785	COG0028	Belongs to the TPP enzyme family
EJA96_12795	COG1984	allophanate hydrolase subunit 2
EJA96_12820	COG0583	DNA-binding transcription factor activity
EJA96_12840	COG2169	Transcriptional regulator
EJA96_12840	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
EJA96_12875	COG0583	DNA-binding transcription factor activity
EJA96_12880	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
EJA96_12890	COG1475	DNA binding
EJA96_12900	COG3969	phosphoadenosine phosphosulfate
EJA96_12910	COG3121	Chaperone
EJA96_12915	COG3188	usher protein
EJA96_12925	COG3121	Chaperone
EJA96_12945	COG2323	membrane
EJA96_12980	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_12995	COG0058	SHG alpha-glucan phosphorylase activity
EJA96_13020	COG1285	pathogenesis
EJA96_13040	COG0366	Alpha amylase catalytic
EJA96_13050	COG0392	lysyltransferase activity
EJA96_13055	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
EJA96_13060	COG3568	Endonuclease Exonuclease Phosphatase
EJA96_13105	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
EJA96_13145	COG1363	Peptidase, m42
EJA96_13175	COG4191	Histidine kinase
EJA96_13175	COG0784	Response regulator, receiver
EJA96_13190	COG2890	protein-(glutamine-N5) methyltransferase activity
EJA96_13225	COG0517	IMP dehydrogenase activity
EJA96_13250	COG1309	transcriptional regulator
EJA96_13255	COG2130	NADP-dependent
EJA96_13265	COG2084	Dehydrogenase
EJA96_13280	COG0765	amino acid transport
EJA96_13285	COG0765	amino acid transport
EJA96_13370	COG4644	lycopene metabolic process
EJA96_13390	COG3618	amidohydrolase
EJA96_13405	COG2271	Major facilitator Superfamily
EJA96_13410	COG4948	Mandelate Racemase Muconate Lactonizing
EJA96_13420	COG1012	belongs to the aldehyde dehydrogenase family
EJA96_13425	COG2995	paraquat-inducible protein a
EJA96_13430	COG3008	intermembrane lipid transfer
EJA96_13470	COG3162	membrane
EJA96_13475	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
EJA96_13490	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
EJA96_13495	COG1012	belongs to the aldehyde dehydrogenase family
EJA96_13500	COG0531	amino acid
EJA96_13515	COG2072	flavoprotein involved in K transport
EJA96_13530	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EJA96_13600	COG1484	DNA-dependent DNA replication
EJA96_13605	COG4584	PFAM Integrase catalytic
EJA96_13635	COG2409	Drug exporters of the RND superfamily
EJA96_13640	COG4447	cellulose binding
EJA96_13650	COG2508	Transcriptional regulator
EJA96_13885	COG2258	MOSC domain
EJA96_13950	COG0728	peptidoglycan biosynthetic process
EJA96_14010	COG0252	asparaginase activity
EJA96_14045	COG1609	Transcriptional regulator
EJA96_14055	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
EJA96_14090	COG0504	CTP synthase activity
EJA96_14105	COG1309	transcriptional regulator
EJA96_14130	COG1064	alcohol dehydrogenase
EJA96_14135	COG2207	Transcriptional regulator
EJA96_14140	COG0640	Transcriptional regulator
EJA96_14150	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
EJA96_14155	COG0431	NADPH-dependent FMN reductase
EJA96_14200	COG4772	TonB-dependent receptor
EJA96_14240	COG1053	succinate dehydrogenase
EJA96_14250	COG3469	chitinase activity
EJA96_14285	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EJA96_14290	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
EJA96_14300	COG2175	clavaminate synthase activity
EJA96_14310	COG1396	sequence-specific DNA binding
EJA96_14330	COG0583	DNA-binding transcription factor activity
EJA96_14335	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EJA96_14350	COG3265	gluconokinase activity
EJA96_14365	COG1012	belongs to the aldehyde dehydrogenase family
EJA96_14385	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EJA96_14390	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EJA96_14395	COG1116	anion transmembrane transporter activity
EJA96_14425	COG1175	transmembrane transport
EJA96_14440	COG0246	Mannitol dehydrogenase
EJA96_14475	COG1464	Belongs to the NlpA lipoprotein family
EJA96_14485	COG2011	ABC-type metal ion transport system permease component
EJA96_14490	COG0584	glycerophosphoryl diester phosphodiesterase
EJA96_14495	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
EJA96_14500	COG3829	transcription factor binding
EJA96_14525	COG3829	transcription factor binding
EJA96_14600	COG3501	Rhs element vgr protein
EJA96_14645	COG1304	FMN binding
EJA96_14655	COG0735	belongs to the Fur family
EJA96_14680	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EJA96_14725	COG4774	siderophore transport
EJA96_14735	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
EJA96_14790	COG1121	(ABC) transporter
EJA96_14795	COG1108	ABC-type Mn2 Zn2 transport systems permease components
EJA96_14835	COG0583	DNA-binding transcription factor activity
EJA96_14845	COG1335	isochorismatase
EJA96_14930	COG1566	PFAM secretion protein HlyD family protein
EJA96_14950	COG0583	DNA-binding transcription factor activity
EJA96_15030	COG0583	DNA-binding transcription factor activity
EJA96_15060	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
EJA96_15190	COG1595	DNA-templated transcription, initiation
EJA96_15215	COG0625	glutathione transferase activity
EJA96_15245	COG0745	RESPONSE REGULATOR receiver
EJA96_15260	COG3258	Cytochrome c
EJA96_15270	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EJA96_15335	COG2318	DinB family
EJA96_15350	COG0590	tRNA wobble adenosine to inosine editing
EJA96_15355	COG2807	transmembrane transport
EJA96_15390	COG3485	protocatechuate 3,4-dioxygenase
EJA96_15400	COG4948	Mandelate Racemase Muconate Lactonizing
EJA96_15425	COG4638	Rieske (2fe-2S)
EJA96_15430	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
EJA96_15435	COG0543	2 iron, 2 sulfur cluster binding
EJA96_15435	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
EJA96_15495	COG1538	Outer membrane efflux protein
EJA96_15500	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EJA96_15505	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EJA96_15545	COG1115	amino acid carrier protein
EJA96_15555	COG0667	Aldo Keto reductase
EJA96_15560	COG4589	Belongs to the CDS family
EJA96_15575	COG0671	phosphoesterase, PA-phosphatase related
EJA96_15575	COG2453	phosphatase
EJA96_15580	COG2267	carboxylic ester hydrolase activity
EJA96_15585	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
EJA96_15595	COG0729	surface antigen
EJA96_15605	COG0708	Exodeoxyribonuclease III
EJA96_15610	COG0346	lactoylglutathione lyase activity
EJA96_15645	COG1960	acyl-CoA dehydrogenase activity
EJA96_15660	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
EJA96_15670	COG0318	PFAM AMP-dependent synthetase and ligase
EJA96_15705	COG0659	secondary active sulfate transmembrane transporter activity
EJA96_15730	COG4251	negative regulation of phosphorylation
EJA96_15730	COG3706	GGDEF domain
EJA96_15730	COG2203	Gaf domain
EJA96_15730	COG5001	Diguanylate cyclase
EJA96_15755	COG4191	Histidine kinase
EJA96_15785	COG1522	sequence-specific DNA binding
EJA96_15800	COG2249	NAD(P)H dehydrogenase (quinone) activity
EJA96_15820	COG2205	protein histidine kinase activity
EJA96_15820	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EJA96_15875	COG2197	response regulator
EJA96_15890	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EJA96_15900	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EJA96_15905	COG1960	acyl-CoA dehydrogenase activity
EJA96_15915	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EJA96_15925	COG0583	DNA-binding transcription factor activity
EJA96_15965	COG2920	part of a sulfur-relay system
EJA96_15970	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
EJA96_15975	COG0435	Glutathione S-transferase
EJA96_15990	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
EJA96_16005	COG0492	ferredoxin-NADP+ reductase activity
EJA96_16020	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
EJA96_16025	COG0542	response to heat
EJA96_16035	COG1278	Cold shock
EJA96_16075	COG2850	peptidyl-arginine hydroxylation
EJA96_16080	COG2153	protein acetylation
EJA96_16180	COG2226	methyltransferase
EJA96_16195	COG2056	Na+-H+ antiporter family
EJA96_16200	COG0840	transmembrane signaling receptor activity
EJA96_16215	COG0745	RESPONSE REGULATOR receiver
EJA96_16265	COG0720	synthase
EJA96_16315	COG1459	type II secretion system
EJA96_16320	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
EJA96_16330	COG4106	trans-aconitate 2-methyltransferase activity
EJA96_16340	COG0583	DNA-binding transcription factor activity
EJA96_16365	COG3501	Rhs element vgr protein
EJA96_16395	COG1959	2 iron, 2 sulfur cluster binding
EJA96_16400	COG1607	acyl-coa hydrolase
EJA96_16475	COG0542	response to heat
EJA96_16485	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
EJA96_16490	COG1280	lysine exporter protein (LysE YggA)
EJA96_16510	COG1733	regulation of RNA biosynthetic process
EJA96_16515	COG0243	molybdopterin cofactor binding
EJA96_16520	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
EJA96_16535	COG0789	Transcriptional regulator
EJA96_16620	COG2189	Belongs to the N(4) N(6)-methyltransferase family
EJA96_16630	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
EJA96_16710	COG0024	Methionine aminopeptidase
EJA96_16740	COG1295	ribonuclease BN
EJA96_16750	COG1238	metal cluster binding
EJA96_16835	COG2837	iron assimilation
EJA96_16845	COG1250	3-hydroxyacyl-CoA dehydrogenase
EJA96_16845	COG1024	Enoyl-CoA hydratase
EJA96_16855	COG1051	belongs to the nudix hydrolase family
EJA96_16910	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EJA96_16915	COG2116	formate transmembrane transporter activity
EJA96_16965	COG3655	Transcriptional regulator
EJA96_16980	COG0840	transmembrane signaling receptor activity
EJA96_17045	COG4974	Belongs to the 'phage' integrase family
EJA96_17125	COG0745	RESPONSE REGULATOR receiver
EJA96_17135	COG2853	Lipoprotein
EJA96_17145	COG2188	Transcriptional regulator
EJA96_17190	COG0842	Transport permease protein
EJA96_17195	COG1131	(ABC) transporter
EJA96_17200	COG0625	glutathione transferase activity
EJA96_17295	COG0625	glutathione transferase activity
EJA96_17300	COG1956	GAF domain-containing protein
EJA96_17305	COG2255	four-way junction helicase activity
EJA96_17310	COG2205	protein histidine kinase activity
EJA96_17310	COG5002	protein histidine kinase activity
EJA96_17310	COG0784	Response regulator, receiver
EJA96_17315	COG1846	Transcriptional regulator
EJA96_17320	COG0386	Belongs to the glutathione peroxidase family
EJA96_17330	COG0436	Aminotransferase
EJA96_17345	COG2866	Carboxypeptidase
EJA96_17385	COG3384	dioxygenase
EJA96_17395	COG1024	Enoyl-CoA hydratase
EJA96_17405	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
EJA96_17410	COG3214	Protein conserved in bacteria
EJA96_17420	COG0583	DNA-binding transcription factor activity
EJA96_17430	COG0583	DNA-binding transcription factor activity
EJA96_17435	COG1846	Transcriptional regulator
EJA96_17440	COG1764	response to oxidative stress
EJA96_17480	COG4181	ATPase activity
EJA96_17485	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
EJA96_17500	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
EJA96_17515	COG2259	Doxx family
EJA96_17520	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
EJA96_17525	COG0084	hydrolase, TatD family'
EJA96_17545	COG3706	GGDEF domain
EJA96_17570	COG0714	Associated with various cellular activities
EJA96_17580	COG0583	DNA-binding transcription factor activity
EJA96_17590	COG0583	DNA-binding transcription factor activity
EJA96_17620	COG1309	transcriptional regulator
EJA96_17635	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
EJA96_17640	COG1960	acyl-CoA dehydrogenase activity
EJA96_17675	COG1595	DNA-templated transcription, initiation
EJA96_17680	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EJA96_17690	COG2197	response regulator
EJA96_17695	COG2885	chlorophyll binding
EJA96_17695	COG3047	cAMP biosynthetic process
EJA96_17800	COG0840	transmembrane signaling receptor activity
EJA96_17805	COG0583	DNA-binding transcription factor activity
EJA96_17810	COG1473	amidohydrolase
EJA96_17815	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EJA96_17820	COG4215	(ABC) transporter
EJA96_17825	COG4160	amino acid transport
EJA96_17860	COG1309	transcriptional regulator
EJA96_17865	COG1902	pentaerythritol trinitrate reductase activity
EJA96_17870	COG2814	Major facilitator Superfamily
EJA96_17895	COG2233	PERMEase
EJA96_17925	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
EJA96_18010	COG0084	hydrolase, TatD family'
EJA96_18030	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
EJA96_18040	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
EJA96_18070	COG1399	metal-binding, possibly nucleic acid-binding protein
EJA96_18080	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
EJA96_18080	COG0616	signal peptide processing
EJA96_18110	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
EJA96_18130	COG0848	biopolymer transport protein
EJA96_18135	COG0811	peptide transport
EJA96_18150	COG4591	ABC-type transport system involved in lipoprotein release permease component
EJA96_18160	COG4591	ABC-type transport system involved in lipoprotein release permease component
EJA96_18175	COG0584	glycerophosphoryl diester phosphodiesterase
EJA96_18190	COG1477	protein flavinylation
EJA96_18225	COG1113	amino acid transport
EJA96_18315	COG0589	response to stress
EJA96_18330	COG0741	lytic transglycosylase activity
EJA96_18350	COG1070	Carbohydrate kinase
EJA96_18375	COG0521	Mo-molybdopterin cofactor biosynthetic process
EJA96_18405	COG1309	transcriptional regulator
EJA96_18410	COG0625	glutathione transferase activity
EJA96_18420	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
EJA96_18430	COG0004	ammonium transporteR
EJA96_18460	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EJA96_18460	COG2205	protein histidine kinase activity
EJA96_18465	COG2197	response regulator
EJA96_18470	COG3171	Protein conserved in bacteria
EJA96_18475	COG2027	D-alanyl-D-alanine carboxypeptidase
EJA96_18490	COG3130	regulation of translation
EJA96_18540	COG0297	glycogen (starch) synthase activity
EJA96_18565	COG2342	PFAM TM1410 hypothetical-related protein
EJA96_18580	COG0714	Associated with various cellular activities
EJA96_18615	COG0745	RESPONSE REGULATOR receiver
EJA96_18620	COG5002	protein histidine kinase activity
EJA96_18650	COG0308	aminopeptidase N
EJA96_18660	COG3139	Protein of unknown function (DUF1315)
EJA96_18695	COG1902	pentaerythritol trinitrate reductase activity
EJA96_18695	COG0446	pyridine nucleotide-disulphide oxidoreductase
EJA96_18795	COG1286	toxin biosynthetic process
EJA96_18800	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
EJA96_18805	COG0285	dihydrofolate synthase activity
EJA96_18845	COG2226	methyltransferase
EJA96_18865	COG0251	oxidation-reduction process
EJA96_18870	COG0583	DNA-binding transcription factor activity
EJA96_18890	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_18905	COG0800	Aldolase
EJA96_18910	COG0596	Alpha beta hydrolase
EJA96_18945	COG0583	DNA-binding transcription factor activity
EJA96_18985	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
EJA96_19010	COG1086	Polysaccharide biosynthesis protein
EJA96_19065	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
EJA96_19095	COG0402	S-adenosylhomocysteine deaminase activity
EJA96_19110	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_19125	COG0786	glutamate:sodium symporter activity
EJA96_19130	COG3706	GGDEF domain
EJA96_19175	COG0676	glucose-6-phosphate 1-epimerase activity
EJA96_19190	COG3842	ATPase activity
EJA96_19195	COG0395	ABC-type sugar transport system, permease component
EJA96_19215	COG2205	protein histidine kinase activity
EJA96_19220	COG0745	RESPONSE REGULATOR receiver
EJA96_19250	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
EJA96_19255	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
EJA96_19260	COG0009	L-threonylcarbamoyladenylate synthase
EJA96_19265	COG0613	PHP domain protein
EJA96_19275	COG2350	Protein conserved in bacteria
EJA96_19285	COG0745	RESPONSE REGULATOR receiver
EJA96_19305	COG0778	Nitroreductase
EJA96_19315	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
EJA96_19320	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
EJA96_19325	COG1127	ABC transporter
EJA96_19355	COG0438	transferase activity, transferring glycosyl groups
EJA96_19355	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
EJA96_19370	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
EJA96_19395	COG0702	epimerase
EJA96_19400	COG0509	glycine decarboxylation via glycine cleavage system
EJA96_19425	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
EJA96_19435	COG1132	(ABC) transporter
EJA96_19465	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
EJA96_19470	COG3162	membrane
EJA96_19490	COG2853	Lipoprotein
EJA96_19505	COG1560	Kdo2-lipid A biosynthetic process
EJA96_19515	COG2894	cell division
EJA96_19525	COG0564	pseudouridine synthase activity
EJA96_19555	COG1176	ABC-type spermidine putrescine transport system, permease component I
EJA96_19570	COG0560	Phosphoserine phosphatase
EJA96_19575	COG0604	alcohol dehydrogenase
EJA96_19575	COG3321	synthase
EJA96_19585	COG2200	EAL domain
EJA96_19635	COG0385	Bile acid
EJA96_19640	COG2076	Multidrug Resistance protein
EJA96_19655	COG4772	TonB-dependent receptor
EJA96_19670	COG2205	protein histidine kinase activity
EJA96_19750	COG1595	DNA-templated transcription, initiation
EJA96_19805	COG0537	adenosine 5'-monophosphoramidase activity
EJA96_19815	COG1643	Atp-dependent helicase
EJA96_19830	COG0318	PFAM AMP-dependent synthetase and ligase
EJA96_19835	COG0318	PFAM AMP-dependent synthetase and ligase
EJA96_19840	COG2267	carboxylic ester hydrolase activity
EJA96_19845	COG2030	dehydratase
EJA96_19850	COG2814	Major facilitator Superfamily
EJA96_19890	COG0589	response to stress
EJA96_19905	COG2084	Dehydrogenase
EJA96_19910	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
EJA96_19920	COG3639	organic phosphonate transmembrane transporter activity
EJA96_19955	COG0583	DNA-binding transcription factor activity
EJA96_20000	COG4221	oxidoreductase activity
EJA96_20005	COG2124	cytochrome p450
EJA96_20045	COG1752	Esterase of the alpha-beta hydrolase superfamily
EJA96_20070	COG3706	GGDEF domain
EJA96_20070	COG5001	Diguanylate cyclase
EJA96_20070	COG4251	negative regulation of phosphorylation
EJA96_20070	COG2203	Gaf domain
EJA96_20075	COG0514	ATP-dependent DNA helicase (RecQ)
EJA96_20085	COG0745	RESPONSE REGULATOR receiver
EJA96_20100	COG0784	Response regulator, receiver
EJA96_20100	COG0835	chemotaxis
EJA96_20120	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
EJA96_20145	COG0697	spore germination
EJA96_20220	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
EJA96_20230	COG3454	Phosphonate metabolism
EJA96_20235	COG4778	phosphonate C-P lyase system protein PhnL
EJA96_20240	COG4107	phosphonate C-P lyase system protein PhnK
EJA96_20245	COG3627	carbon phosphorus lyase activity
EJA96_20250	COG3626	phosphonate metabolism
EJA96_20260	COG3624	Phosphonate C-P lyase system protein PhnG
EJA96_20265	COG2188	Transcriptional regulator
EJA96_20270	COG3639	organic phosphonate transmembrane transporter activity
EJA96_20275	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
EJA96_20350	COG0583	DNA-binding transcription factor activity
EJA96_20405	COG1629	transport
EJA96_20490	COG1635	Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur
EJA96_20500	COG1024	Enoyl-CoA hydratase
EJA96_20505	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_20525	COG1346	cytolysis
EJA96_20535	COG0583	DNA-binding transcription factor activity
EJA96_20560	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
EJA96_20595	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EJA96_20600	COG0431	NADPH-dependent FMN reductase
EJA96_20610	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EJA96_20615	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EJA96_20620	COG0450	alkyl hydroperoxide reductase
EJA96_20640	COG0183	Belongs to the thiolase family
EJA96_20670	COG0367	asparagine synthase
EJA96_20680	COG1363	Peptidase, m42
EJA96_20685	COG2205	protein histidine kinase activity
EJA96_20685	COG5002	protein histidine kinase activity
EJA96_20685	COG0784	Response regulator, receiver
EJA96_20710	COG0477	Major facilitator Superfamily
EJA96_20715	COG0668	transmembrane transport
EJA96_20720	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
EJA96_20740	COG0791	NLP P60 protein
EJA96_20790	COG0489	protein tyrosine kinase activity
EJA96_20815	COG3501	Rhs element vgr protein
EJA96_20860	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
EJA96_20870	COG2264	protein methyltransferase activity
EJA96_20875	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
EJA96_20915	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EJA96_20945	COG0450	alkyl hydroperoxide reductase
EJA96_20950	COG2906	2 iron, 2 sulfur cluster binding
EJA96_20960	COG2223	nitrite transmembrane transporter activity
EJA96_20965	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
EJA96_20970	COG0243	molybdopterin cofactor binding
EJA96_20990	COG3842	ATPase activity
EJA96_21105	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EJA96_21105	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
EJA96_21105	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EJA96_21110	COG1105	Belongs to the carbohydrate kinase PfkB family
EJA96_21120	COG1609	Transcriptional regulator
EJA96_21125	COG0084	hydrolase, TatD family'
EJA96_21135	COG0583	DNA-binding transcription factor activity
EJA96_21175	COG2814	Major facilitator Superfamily
EJA96_21225	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
EJA96_21265	COG0583	DNA-binding transcription factor activity
EJA96_21285	COG1024	Enoyl-CoA hydratase
EJA96_21290	COG1804	L-carnitine dehydratase bile acid-inducible protein F
EJA96_21295	COG1960	acyl-CoA dehydrogenase activity
EJA96_21300	COG0583	DNA-binding transcription factor activity
EJA96_21310	COG0477	Major facilitator Superfamily
EJA96_21315	COG2169	Transcriptional regulator
EJA96_21315	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
EJA96_21320	COG0531	amino acid
EJA96_21345	COG0069	glutamate synthase activity
EJA96_21375	COG1176	ABC-type spermidine putrescine transport system, permease component I
EJA96_21380	COG1177	transmembrane transport
EJA96_21395	COG3530	Putative quorum-sensing-regulated virulence factor
EJA96_21400	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
EJA96_21405	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
EJA96_21425	COG1546	Belongs to the CinA family
EJA96_21480	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
EJA96_21485	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
EJA96_21490	COG0583	DNA-binding transcription factor activity
EJA96_21495	COG2391	methyltransferase activity
EJA96_21545	COG1115	amino acid carrier protein
EJA96_21625	COG0024	Methionine aminopeptidase
EJA96_21635	COG0436	Aminotransferase
EJA96_21640	COG0025	NhaP-type Na H and K H
EJA96_21660	COG1393	Belongs to the ArsC family
EJA96_21665	COG1280	lysine exporter protein (LysE YggA)
EJA96_21680	COG2166	iron-sulfur cluster assembly
EJA96_21750	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
EJA96_21755	COG1801	Protein of unknown function DUF72
EJA96_21765	COG1214	PFAM Peptidase M22, glycoprotease
EJA96_21785	COG0789	Transcriptional regulator
EJA96_21800	COG2885	chlorophyll binding
EJA96_21815	COG3064	Membrane
EJA96_21815	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
EJA96_21815	COG1073	alpha beta
EJA96_21885	COG0477	Major facilitator Superfamily
EJA96_22015	COG2369	cell adhesion
EJA96_22025	COG4373	Mu-like prophage FluMu protein gp28
EJA96_22115	COG0488	(ABC) transporter
EJA96_22175	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
EJA96_22180	COG2197	response regulator
EJA96_22225	COG1902	pentaerythritol trinitrate reductase activity
EJA96_22235	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
EJA96_22240	COG4681	YaeQ
EJA96_22250	COG2255	four-way junction helicase activity
EJA96_22275	COG1804	L-carnitine dehydratase bile acid-inducible protein F
EJA96_22300	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
EJA96_22320	COG1607	acyl-coa hydrolase
EJA96_22345	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
EJA96_22355	COG4536	flavin adenine dinucleotide binding
EJA96_22365	COG0477	Major facilitator Superfamily
EJA96_22405	COG2188	Transcriptional regulator
EJA96_22410	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
EJA96_22415	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EJA96_22465	COG0590	tRNA wobble adenosine to inosine editing
EJA96_22470	COG2132	Multicopper oxidase
EJA96_22520	COG0583	DNA-binding transcription factor activity
EJA96_22525	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
EJA96_22535	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
EJA96_22550	COG1335	isochorismatase
EJA96_22560	COG2847	Copper chaperone PCu(A)C
EJA96_22570	COG0739	heme binding
EJA96_22610	COG0667	Aldo Keto reductase
EJA96_22625	COG0436	Aminotransferase
EJA96_22715	COG1045	serine acetyltransferase
EJA96_22730	COG3134	Outer membrane lipoprotein
EJA96_22745	COG1862	Preprotein translocase
EJA96_22765	COG2200	EAL domain
EJA96_22775	COG0795	lipopolysaccharide-transporting ATPase activity
EJA96_22780	COG0795	lipopolysaccharide-transporting ATPase activity
EJA96_22825	COG4120	Belongs to the binding-protein-dependent transport system permease family
EJA96_22830	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
EJA96_22835	COG0471	metal ion transport
EJA96_22835	COG0490	domain, Protein
EJA96_22860	COG0640	Transcriptional regulator
EJA96_22875	COG0583	DNA-binding transcription factor activity
EJA96_22940	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EJA96_22950	COG0318	PFAM AMP-dependent synthetase and ligase
EJA96_22980	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EJA96_23000	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EJA96_23005	COG2181	nitrate reductase activity
EJA96_23010	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
EJA96_23015	COG1140	nitrate reductase beta subunit
EJA96_23020	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
EJA96_23025	COG2223	nitrite transmembrane transporter activity
EJA96_23035	COG3850	Histidine kinase
EJA96_23040	COG2197	response regulator
EJA96_23055	COG2226	methyltransferase
EJA96_23060	COG0300	oxidoreductase activity
EJA96_23115	COG1566	PFAM secretion protein HlyD family protein
EJA96_23135	COG0583	DNA-binding transcription factor activity
EJA96_23145	COG0697	spore germination
EJA96_23155	COG1595	DNA-templated transcription, initiation
EJA96_23160	COG3712	iron ion homeostasis
EJA96_23165	COG4772	TonB-dependent receptor
EJA96_23235	COG0521	Mo-molybdopterin cofactor biosynthetic process
EJA96_23245	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
EJA96_23270	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
EJA96_23305	COG0318	PFAM AMP-dependent synthetase and ligase
EJA96_23310	COG0183	Belongs to the thiolase family
EJA96_23320	COG2207	Transcriptional regulator
EJA96_23330	COG1294	oxidase, subunit
EJA96_23335	COG1271	oxidase subunit
EJA96_23350	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
EJA96_23355	COG1297	OPT oligopeptide transporter protein
EJA96_23360	COG2175	clavaminate synthase activity
EJA96_23365	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EJA96_23375	COG4521	taurine ABC transporter
EJA96_23395	COG1946	Acyl-CoA thioesterase
EJA96_23415	COG2205	protein histidine kinase activity
EJA96_23415	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EJA96_23420	COG2202	Pas domain
EJA96_23420	COG2199	diguanylate cyclase activity
EJA96_23420	COG2200	EAL domain
EJA96_23425	COG2197	response regulator
EJA96_23440	COG0513	Belongs to the DEAD box helicase family
EJA96_23450	COG3416	Protein conserved in bacteria
EJA96_23545	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
EJA96_23555	COG1960	acyl-CoA dehydrogenase activity
EJA96_23570	COG0351	phosphomethylpyrimidine kinase
EJA96_23600	COG1702	phosphate starvation-inducible protein PhoH
EJA96_23610	COG4535	Mg2 and Co2 transporter CorC
EJA96_23620	COG1434	Gram-negative-bacterium-type cell wall biogenesis
EJA96_23685	COG1686	Belongs to the peptidase S11 family
EJA96_23695	COG2951	lytic endotransglycosylase activity
EJA96_23700	COG0772	Belongs to the SEDS family
EJA96_23705	COG0768	penicillin binding
EJA96_23745	COG0586	Pfam SNARE associated Golgi protein
EJA96_23755	COG1346	cytolysis
EJA96_23775	COG0702	epimerase
EJA96_23790	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
EJA96_23800	COG1012	belongs to the aldehyde dehydrogenase family
EJA96_23805	COG0531	amino acid
EJA96_23810	COG4303	Ethanolamine ammonia lyase large subunit
EJA96_23820	COG0456	acetyltransferase
EJA96_23835	COG0586	Pfam SNARE associated Golgi protein
EJA96_23840	COG3228	Belongs to the MtfA family
EJA96_23850	COG0745	RESPONSE REGULATOR receiver
EJA96_23870	COG5002	protein histidine kinase activity
EJA96_23875	COG1131	(ABC) transporter
EJA96_23895	COG4948	Mandelate Racemase Muconate Lactonizing
EJA96_23905	COG0142	geranyltranstransferase activity
EJA96_23915	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
EJA96_23930	COG3577	Aspartyl protease
EJA96_23940	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
EJA96_23970	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
EJA96_23970	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
EJA96_23990	COG2264	protein methyltransferase activity
EJA96_23995	COG3118	belongs to the thioredoxin family
EJA96_24010	COG1136	(ABC) transporter
EJA96_24025	COG3047	cAMP biosynthetic process
EJA96_24030	COG3094	Invasion gene expression up-regulator, SirB
EJA96_24035	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
EJA96_24055	COG0531	amino acid
EJA96_24095	COG2197	response regulator
EJA96_24115	COG3188	usher protein
EJA96_24120	COG3121	Chaperone
EJA96_24135	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
EJA96_24140	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_24175	COG2271	Major facilitator Superfamily
EJA96_24185	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_24205	COG0583	DNA-binding transcription factor activity
EJA96_24250	COG1611	Belongs to the LOG family
EJA96_24290	COG1012	belongs to the aldehyde dehydrogenase family
EJA96_24295	COG3384	dioxygenase
EJA96_24305	COG2271	Major facilitator Superfamily
EJA96_24310	COG3971	2-oxopent-4-enoate hydratase activity
EJA96_24325	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
EJA96_24335	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EJA96_24340	COG3278	Belongs to the heme-copper respiratory oxidase family
EJA96_24350	COG1846	Transcriptional regulator
EJA96_24355	COG2814	Major facilitator Superfamily
EJA96_24390	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EJA96_24420	COG3284	Transcriptional regulator
EJA96_24435	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
EJA96_24450	COG1063	alcohol dehydrogenase
EJA96_24455	COG4991	sh3 domain protein
EJA96_24465	COG4774	siderophore transport
EJA96_24465	COG1629	transport
EJA96_24475	COG1120	ATPase activity
EJA96_24480	COG4592	Periplasmic binding protein
EJA96_24500	COG0154	amidase activity
EJA96_24535	COG1959	2 iron, 2 sulfur cluster binding
EJA96_24540	COG0492	ferredoxin-NADP+ reductase activity
EJA96_24545	COG0693	protein deglycase activity
EJA96_24555	COG0251	oxidation-reduction process
EJA96_24570	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EJA96_24580	COG2226	methyltransferase
EJA96_24630	COG2271	Major facilitator Superfamily
EJA96_24635	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EJA96_24650	COG4566	intracellular signal transduction
EJA96_24665	COG1960	acyl-CoA dehydrogenase activity
EJA96_24670	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
EJA96_24690	COG2706	6-phosphogluconolactonase activity
EJA96_24700	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EJA96_24705	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EJA96_24825	COG1021	2,3-dihydroxybenzoate-AMP ligase
EJA96_24850	COG2814	Major facilitator Superfamily
EJA96_24885	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
EJA96_25145	COG1183	phosphatidylcholine synthase activity
EJA96_25160	COG0028	Belongs to the TPP enzyme family
EJA96_25170	COG3098	single-species biofilm formation
EJA96_25180	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
EJA96_25215	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
EJA96_25220	COG4558	Periplasmic binding protein
EJA96_25225	COG3720	iron ion transport
EJA96_25230	COG4771	TonB-dependent receptor
EJA96_25255	COG0436	Aminotransferase
EJA96_25265	COG2321	neutral zinc metallopeptidase
EJA96_25275	COG2252	PERMEase
EJA96_25295	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
EJA96_25310	COG4191	Histidine kinase
EJA96_25415	COG0195	Participates in both transcription termination and antitermination
EJA96_25450	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
EJA96_25455	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
EJA96_25520	COG0497	DNA recombination
EJA96_25550	COG2186	Transcriptional regulator
EJA96_25555	COG1620	l-lactate permease
EJA96_25585	COG0745	RESPONSE REGULATOR receiver
EJA96_25605	COG0697	spore germination
EJA96_25625	COG0697	spore germination
EJA96_25630	COG1522	sequence-specific DNA binding
EJA96_25640	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_25660	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
EJA96_25690	COG0509	glycine decarboxylation via glycine cleavage system
EJA96_25730	COG0531	amino acid
EJA96_25745	COG3276	selenocysteine insertion sequence binding
EJA96_25760	COG2864	formate dehydrogenase
EJA96_25765	COG0437	4 iron, 4 sulfur cluster binding
EJA96_25770	COG0243	molybdopterin cofactor binding
EJA96_25770	COG3383	formate dehydrogenase (NAD+) activity
EJA96_25775	COG0243	molybdopterin cofactor binding
EJA96_25775	COG3383	formate dehydrogenase (NAD+) activity
EJA96_25780	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
EJA96_25785	COG0446	pyridine nucleotide-disulphide oxidoreductase
EJA96_25785	COG1902	pentaerythritol trinitrate reductase activity
EJA96_25810	COG0463	Glycosyl transferase, family 2
EJA96_25820	COG0534	Mate efflux family protein
EJA96_25830	COG1283	sodium-dependent phosphate transmembrane transporter activity
EJA96_25855	COG2162	N-hydroxyarylamine O-acetyltransferase activity
EJA96_25880	COG4221	oxidoreductase activity
EJA96_25885	COG1272	protein, Hemolysin III
EJA96_25920	COG0023	Translation Initiation Factor
EJA96_26010	COG2095	MarC family integral membrane protein
EJA96_26015	COG0683	leucine binding
EJA96_26020	COG0559	Belongs to the binding-protein-dependent transport system permease family
EJA96_26030	COG0411	ABC transporter
EJA96_26075	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
EJA96_26095	COG0443	Heat shock 70 kDa protein
EJA96_26120	COG0789	Transcriptional regulator
EJA96_26125	COG2982	Protein involved in outer membrane biogenesis
EJA96_26130	COG2193	ferroxidase activity
EJA96_26140	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
EJA96_26145	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
EJA96_26210	COG1595	DNA-templated transcription, initiation
EJA96_26240	COG0583	DNA-binding transcription factor activity
EJA96_26265	COG4221	oxidoreductase activity
EJA96_26270	COG2423	ornithine cyclodeaminase activity
EJA96_26275	COG0410	ABC transporter
EJA96_26290	COG0559	Belongs to the binding-protein-dependent transport system permease family
EJA96_26300	COG0583	DNA-binding transcription factor activity
EJA96_26315	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
EJA96_26355	COG0668	transmembrane transport
EJA96_26380	COG5001	Diguanylate cyclase
EJA96_26380	COG3300	MHYT domain
EJA96_26395	COG0305	Participates in initiation and elongation during chromosome replication
EJA96_26425	COG0557	exoribonuclease II activity
EJA96_26455	COG0330	HflC and HflK could
EJA96_26460	COG0330	HflC and HflK could
EJA96_26465	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
EJA96_26485	COG0860	N-Acetylmuramoyl-L-alanine amidase
EJA96_26490	COG0802	atpase or kinase
EJA96_26495	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
EJA96_26495	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
EJA96_26550	COG3300	MHYT domain
EJA96_26550	COG5001	Diguanylate cyclase
EJA96_26555	COG0560	Phosphoserine phosphatase
EJA96_26555	COG3830	Belongs to the UPF0237 family
EJA96_26565	COG1988	membrane-bound metal-dependent
EJA96_26580	COG3577	Aspartyl protease
EJA96_26595	COG3150	esterase
EJA96_26600	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
EJA96_26610	COG0494	nUDIX hydrolase
EJA96_26625	COG1538	Outer membrane efflux protein
EJA96_26630	COG2249	NAD(P)H dehydrogenase (quinone) activity
EJA96_26650	COG1960	acyl-CoA dehydrogenase activity
EJA96_26655	COG1024	Enoyl-CoA hydratase
EJA96_26660	COG0833	amino acid
EJA96_26700	COG1519	Transferase
EJA96_26705	COG0583	DNA-binding transcription factor activity
EJA96_26720	COG0667	Aldo Keto reductase
EJA96_26730	COG1960	acyl-CoA dehydrogenase activity
EJA96_26735	COG1960	acyl-CoA dehydrogenase activity
EJA96_26760	COG1215	transferase activity, transferring glycosyl groups
EJA96_26780	COG0438	transferase activity, transferring glycosyl groups
EJA96_26785	COG2192	nodulation
EJA96_26810	COG0438	transferase activity, transferring glycosyl groups
EJA96_26815	COG0859	PFAM glycosyl transferase family 9
EJA96_26820	COG0859	PFAM glycosyl transferase family 9
EJA96_26865	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
EJA96_26870	COG1960	acyl-CoA dehydrogenase activity
EJA96_26885	COG1196	nuclear chromosome segregation
EJA96_26885	COG3264	Mechanosensitive ion channel
EJA96_26895	COG0730	response to heat
EJA96_26915	COG1192	Involved in chromosome partitioning
EJA96_26920	COG0583	DNA-binding transcription factor activity
EJA96_26925	COG2814	Major facilitator Superfamily
EJA96_26950	COG0493	'glutamate synthase
EJA96_26955	COG0067	glutamate synthase
EJA96_26955	COG0070	glutamate synthase
EJA96_26955	COG0069	glutamate synthase activity
EJA96_27005	COG0281	malic enzyme
EJA96_27025	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
EJA96_27145	COG0840	transmembrane signaling receptor activity
EJA96_27155	COG1126	abc transporter atp-binding protein
EJA96_27160	COG0765	amino acid transport
EJA96_27190	COG1051	belongs to the nudix hydrolase family
EJA96_27195	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EJA96_27200	COG0251	oxidation-reduction process
EJA96_27230	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
EJA96_27235	COG3501	Rhs element vgr protein
EJA96_27250	COG2986	histidine ammonia-lyase
EJA96_27255	COG4175	Glycine betaine
EJA96_27260	COG4176	ABC-type proline glycine betaine transport system permease component
EJA96_27280	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
EJA96_27315	COG0402	S-adenosylhomocysteine deaminase activity
EJA96_27365	COG0789	Transcriptional regulator
EJA96_27395	COG0668	transmembrane transport
EJA96_27410	COG3852	Histidine kinase
EJA96_27430	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
EJA96_27465	COG0793	Belongs to the peptidase S41A family
EJA96_27470	COG2861	carbohydrate metabolic process
EJA96_27530	COG0579	oxidoreductase
EJA96_27540	COG1194	a g-specific adenine glycosylase
EJA96_27550	COG0673	inositol 2-dehydrogenase activity
EJA96_27600	COG4974	Belongs to the 'phage' integrase family
EJA96_27640	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_27675	COG1846	Transcriptional regulator
EJA96_27685	COG1566	PFAM secretion protein HlyD family protein
EJA96_27690	COG2814	Major facilitator Superfamily
EJA96_27725	COG1088	dTDP-glucose 4,6-dehydratase activity
EJA96_27730	COG1091	dTDP-4-dehydrorhamnose reductase activity
EJA96_27800	COG0494	nUDIX hydrolase
EJA96_27805	COG1011	Hydrolase
EJA96_27810	COG1652	LysM domain
EJA96_27820	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
EJA96_27840	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
EJA96_27850	COG0824	Thioesterase
EJA96_27855	COG1454	alcohol dehydrogenase
EJA96_27860	COG1960	acyl-CoA dehydrogenase activity
EJA96_27865	COG1250	3-hydroxyacyl-CoA dehydrogenase
EJA96_27865	COG1024	Enoyl-CoA hydratase
EJA96_27875	COG0778	Nitroreductase
EJA96_27905	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
EJA96_27910	COG0189	ligase activity
EJA96_27910	COG4067	protein conserved in archaea
EJA96_27925	COG2205	protein histidine kinase activity
EJA96_27930	COG0745	RESPONSE REGULATOR receiver
EJA96_27935	COG2183	response to ionizing radiation
EJA96_27965	COG0306	phosphate transporter
EJA96_27970	COG1392	Phosphate transport regulator
EJA96_28010	COG1178	ABC-type Fe3 transport system permease component
EJA96_28020	COG0583	DNA-binding transcription factor activity
EJA96_28035	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
EJA96_28045	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
EJA96_28050	COG0006	proline dipeptidase activity
EJA96_28075	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
EJA96_28085	COG0842	Transport permease protein
EJA96_28090	COG0842	Transport permease protein
EJA96_28090	COG1129	ABC transporter
EJA96_28095	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EJA96_28110	COG2271	Major facilitator Superfamily
EJA96_28125	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
EJA96_28125	COG2755	lipolytic protein G-D-S-L family
EJA96_28140	COG0248	Ppx GppA phosphatase
EJA96_28155	COG0586	Pfam SNARE associated Golgi protein
EJA96_28160	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
EJA96_28165	COG2050	protein possibly involved in aromatic compounds catabolism
EJA96_28175	COG0672	)-iron permease
EJA96_28180	COG1280	lysine exporter protein (LysE YggA)
EJA96_28185	COG0861	Integral membrane protein TerC family
EJA96_28195	COG0488	(ABC) transporter
EJA96_28250	COG3275	phosphorelay sensor kinase activity
EJA96_28280	COG0598	Magnesium transport protein CorA
EJA96_28310	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
EJA96_28380	COG0432	Pfam Uncharacterised protein family UPF0047
EJA96_28385	COG0004	ammonium transporteR
EJA96_28390	COG0347	Belongs to the P(II) protein family
EJA96_28435	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
EJA96_28460	COG0732	type I restriction modification DNA specificity domain
EJA96_28495	COG3012	SEC-C Motif Domain Protein
EJA96_28570	COG2226	methyltransferase
EJA96_28585	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
EJA96_28620	COG3344	reverse transcriptase
EJA96_28750	COG0714	Associated with various cellular activities
EJA96_28760	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
EJA96_28770	COG0789	Transcriptional regulator
EJA96_28785	COG0815	Transfers the fatty acyl group on membrane lipoproteins
EJA96_28790	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
EJA96_28830	COG3501	Rhs element vgr protein
EJA96_28895	COG1846	Transcriptional regulator
EJA96_28910	COG2239	Acts as a magnesium transporter
EJA96_28930	COG0477	Major facilitator Superfamily
EJA96_28940	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
EJA96_28945	COG1309	transcriptional regulator
EJA96_28955	COG2271	Major facilitator Superfamily
EJA96_28975	COG0673	inositol 2-dehydrogenase activity
EJA96_28995	COG0583	DNA-binding transcription factor activity
EJA96_29000	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
EJA96_29005	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
EJA96_29015	COG0477	Major facilitator Superfamily
EJA96_29025	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
EJA96_29030	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
EJA96_29035	COG1396	sequence-specific DNA binding
EJA96_29040	COG0235	Class ii aldolase
EJA96_29045	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EJA96_29060	COG1113	amino acid transport
EJA96_29095	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
EJA96_29155	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
EJA96_29160	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
EJA96_29165	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
EJA96_29170	COG2175	clavaminate synthase activity
EJA96_29205	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EJA96_29215	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EJA96_29220	COG1116	anion transmembrane transporter activity
EJA96_29230	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_29235	COG0583	DNA-binding transcription factor activity
EJA96_29245	COG0745	RESPONSE REGULATOR receiver
EJA96_29250	COG0643	Histidine kinase
EJA96_29250	COG2198	Histidine kinase
EJA96_29255	COG0835	chemotaxis
EJA96_29270	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
EJA96_29295	COG0745	RESPONSE REGULATOR receiver
EJA96_29295	COG3706	GGDEF domain
EJA96_29305	COG1309	transcriptional regulator
EJA96_29310	COG2233	PERMEase
EJA96_29345	COG0583	DNA-binding transcription factor activity
EJA96_29350	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EJA96_29365	COG1414	Transcriptional regulator
EJA96_29375	COG3485	protocatechuate 3,4-dioxygenase
EJA96_29380	COG3485	protocatechuate 3,4-dioxygenase
EJA96_29385	COG0583	DNA-binding transcription factor activity
EJA96_29430	COG3248	Nucleoside-binding outer membrane protein
EJA96_29485	COG0402	S-adenosylhomocysteine deaminase activity
EJA96_29515	COG2824	Alkylphosphonate utilization operon protein PhnA
EJA96_29540	COG0583	DNA-binding transcription factor activity
EJA96_29575	COG1733	regulation of RNA biosynthetic process
EJA96_29580	COG2153	protein acetylation
EJA96_29620	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
EJA96_29625	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
EJA96_29630	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
EJA96_29645	COG0659	secondary active sulfate transmembrane transporter activity
EJA96_29685	COG3501	Rhs element vgr protein
EJA96_29710	COG3501	Rhs element vgr protein
EJA96_29790	COG0631	protein serine/threonine phosphatase activity
EJA96_29795	COG0515	serine threonine protein kinase
EJA96_29795	COG2815	serine threonine protein kinase
EJA96_29810	COG1262	PFAM Formylglycine-generating sulfatase enzyme
EJA96_29895	COG3316	Transposase and inactivated derivatives
EJA96_29990	COG3316	Transposase and inactivated derivatives
EJA96_30050	COG1475	DNA binding
EJA96_30055	COG1192	Involved in chromosome partitioning
EJA96_30110	COG0732	type I restriction modification DNA specificity domain
EJA96_30125	COG0582	viral genome integration into host DNA
EJA96_30185	COG2801	Transposase and inactivated derivatives
EJA96_30235	COG2010	Cytochrome c
EJA96_30250	COG2818	Glycosylase
EJA96_30265	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
EJA96_30280	COG0569	domain protein
EJA96_30300	COG1652	LysM domain
EJA96_30335	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EJA96_30355	COG3119	arylsulfatase activity
EJA96_30360	COG0583	DNA-binding transcription factor activity
EJA96_30395	COG3360	Dodecin
EJA96_30495	COG3174	membrane
EJA96_30535	COG0367	asparagine synthase
EJA96_30555	COG0583	DNA-binding transcription factor activity
EJA96_30570	COG1764	response to oxidative stress
EJA96_30605	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
EJA96_30610	COG0339	signal peptide processing
EJA96_30615	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
EJA96_30650	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
EJA96_30675	COG1061	Type III restriction enzyme res subunit
EJA96_30770	COG4974	Belongs to the 'phage' integrase family
EJA96_30795	COG2050	protein possibly involved in aromatic compounds catabolism
EJA96_30820	COG0589	response to stress
EJA96_30825	COG0659	secondary active sulfate transmembrane transporter activity
EJA96_30840	COG0789	Transcriptional regulator
EJA96_30850	COG2608	mercury ion transmembrane transporter activity
EJA96_30860	COG0789	Transcriptional regulator
EJA96_30885	COG4644	lycopene metabolic process
EJA96_30890	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
EJA96_30935	COG3547	Transposase (IS116 IS110 IS902 family)
EJA96_31055	COG3316	Transposase and inactivated derivatives
EJA96_31070	COG1349	DNA-binding transcription factor activity
EJA96_31085	COG0560	Phosphoserine phosphatase
EJA96_31090	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
EJA96_31115	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
EJA96_31140	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
EJA96_31160	COG0523	cobalamin synthesis protein
EJA96_31170	COG0477	Major facilitator Superfamily
EJA96_31175	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
EJA96_31175	COG4651	solute:proton antiporter activity
EJA96_31205	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_31210	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
EJA96_31215	COG0174	glutamine synthetase
EJA96_31220	COG1028	Short-chain dehydrogenase reductase Sdr
EJA96_31230	COG1607	acyl-coa hydrolase
EJA96_31235	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
EJA96_31235	COG4651	solute:proton antiporter activity
EJA96_31265	COG4191	Histidine kinase
EJA96_31275	COG0531	amino acid
EJA96_31305	COG2011	ABC-type metal ion transport system permease component
EJA96_31320	COG1108	ABC-type Mn2 Zn2 transport systems permease components
EJA96_31330	COG0735	belongs to the Fur family
EJA96_31335	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
EJA96_31370	COG3245	cytochrome
EJA96_31390	COG0745	RESPONSE REGULATOR receiver
EJA96_31390	COG3706	GGDEF domain
EJA96_31395	COG2095	MarC family integral membrane protein
EJA96_31400	COG3023	N-Acetylmuramoyl-L-alanine amidase
EJA96_31405	COG5002	protein histidine kinase activity
EJA96_31430	COG1301	dicarboxylic acid transport
EJA96_31435	COG0700	Nucleoside recognition
EJA96_31480	COG1690	Belongs to the RtcB family
EJA96_31485	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
EJA96_31490	COG0861	Integral membrane protein TerC family
EJA96_31495	COG2851	Citrate transporter
EJA96_31505	COG0679	Auxin Efflux Carrier
EJA96_31545	COG2755	lipolytic protein G-D-S-L family
EJA96_31545	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
EJA96_31550	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
EJA96_31600	COG0438	transferase activity, transferring glycosyl groups
EJA96_31615	COG0427	acetyl-CoA hydrolase
EJA96_31650	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
EJA96_31665	COG0583	DNA-binding transcription factor activity
EJA96_31670	COG0439	Biotin carboxylase
EJA96_31675	COG5016	pyruvate
EJA96_31675	COG0511	ligase activity, forming carbon-carbon bonds
EJA96_31700	COG2391	methyltransferase activity
EJA96_31715	COG0583	DNA-binding transcription factor activity
EJA96_31805	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
EJA96_31805	COG1017	nitric oxide dioxygenase activity
EJA96_31845	COG3655	Transcriptional regulator
EJA96_31860	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
EJA96_31865	COG2181	nitrate reductase activity
EJA96_31865	COG0247	lactate metabolic process
EJA96_31870	COG1902	pentaerythritol trinitrate reductase activity
EJA96_31870	COG0446	pyridine nucleotide-disulphide oxidoreductase
EJA96_31925	COG3246	L-lysine catabolic process to acetate
EJA96_31965	COG1760	l-serine dehydratase
EJA96_31975	COG4176	ABC-type proline glycine betaine transport system permease component
EJA96_31980	COG4175	Glycine betaine
EJA96_31985	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
EJA96_32010	COG1607	acyl-coa hydrolase
EJA96_32015	COG0477	Major facilitator Superfamily
EJA96_32055	COG0573	inorganic phosphate transmembrane transporter activity
EJA96_32075	COG0739	heme binding
EJA96_32080	COG1253	flavin adenine dinucleotide binding
EJA96_32110	COG2186	Transcriptional regulator
EJA96_32115	COG0277	FAD linked oxidase domain protein
EJA96_32120	COG0277	FAD linked oxidase domain protein
EJA96_32125	COG0247	lactate metabolic process
EJA96_32170	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
EJA96_32175	COG0583	DNA-binding transcription factor activity
EJA96_32205	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
EJA96_32220	COG1561	YicC-like family, N-terminal region
EJA96_32235	COG0708	Exodeoxyribonuclease III
EJA96_32255	COG3245	cytochrome
EJA96_32295	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
EJA96_32310	COG0747	negative chemotaxis
EJA96_32335	COG1012	belongs to the aldehyde dehydrogenase family
EJA96_32340	COG2814	Major facilitator Superfamily
EJA96_32345	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
EJA96_32350	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EJA96_32355	COG1522	sequence-specific DNA binding
EJA96_32380	COG0251	oxidation-reduction process
EJA96_32390	COG1917	Cupin 2, conserved barrel domain protein
EJA96_32390	COG1396	sequence-specific DNA binding
EJA96_32400	COG0427	acetyl-CoA hydrolase
EJA96_32410	COG0028	Belongs to the TPP enzyme family
EJA96_32415	COG0210	DNA helicase
EJA96_32430	COG0583	DNA-binding transcription factor activity
EJA96_32440	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family