locus-tag class description Y89_0001 PF11638 DnaA N-terminal domain Y89_0001 PF08299 Bacterial dnaA protein helix-turn-helix Y89_0001 PF00308 Bacterial dnaA protein Y89_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Y89_0002 PF02767 DNA polymerase III beta subunit, central domain Y89_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Y89_0003 PF02463 RecF/RecN/SMC N terminal domain Y89_0004 PF00204 DNA gyrase B Y89_0004 PF01751 Toprim domain Y89_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0004 PF18053 DNA gyrase B subunit insert domain Y89_0004 PF00986 DNA gyrase B subunit, carboxyl terminus Y89_0005 PF01527 Transposase Y89_0009 PF00271 Helicase conserved C-terminal domain Y89_0009 PF00176 SNF2 family N-terminal domain Y89_0014 PF05746 DALR anticodon binding domain Y89_0014 PF02092 Glycyl-tRNA synthetase beta subunit Y89_0015 PF02091 Glycyl-tRNA synthetase alpha subunit Y89_0016 PF03352 Methyladenine glycosylase Y89_0019 PF02592 Putative vitamin uptake transporter Y89_0022 PF02254 TrkA-N domain Y89_0022 PF02080 TrkA-C domain Y89_0023 PF01029 NusB family Y89_0023 PF01189 16S rRNA methyltransferase RsmB/F Y89_0024 PF00551 Formyl transferase Y89_0024 PF02911 Formyl transferase, C-terminal domain Y89_0025 PF01327 Polypeptide deformylase Y89_0026 PF01476 LysM domain Y89_0027 PF17782 DprA winged helix domain Y89_0027 PF02481 DNA recombination-mediator protein A Y89_0028 PF01300 Telomere recombination Y89_0029 PF08240 Alcohol dehydrogenase GroES-like domain Y89_0029 PF00107 Zinc-binding dehydrogenase Y89_0030 PF01218 Coproporphyrinogen III oxidase Y89_0031 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Y89_0031 PF01488 Shikimate / quinate 5-dehydrogenase Y89_0031 PF08501 Shikimate dehydrogenase substrate binding domain Y89_0036 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y89_0037 PF00884 Sulfatase Y89_0037 PF12411 Choline sulfatase enzyme C terminal Y89_0038 PF03466 LysR substrate binding domain Y89_0038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0041 PF00196 Bacterial regulatory proteins, luxR family Y89_0041 PF00072 Response regulator receiver domain Y89_0042 PF00290 Tryptophan synthase alpha chain Y89_0043 PF00291 Pyridoxal-phosphate dependent enzyme Y89_0044 PF03466 LysR substrate binding domain Y89_0044 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0045 PF07311 Dodecin Y89_0047 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y89_0047 PF17287 POTRA domain Y89_0047 PF08479 POTRA domain, ShlB-type Y89_0048 PF05860 haemagglutination activity domain Y89_0048 PF13332 Hemagglutinin repeat Y89_0048 PF04829 Pre-toxin domain with VENN motif Y89_0048 PF13018 Extended Signal Peptide of Type V secretion system Y89_0048 PF04829 Pre-toxin domain with VENN motif Y89_0048 PF13018 Extended Signal Peptide of Type V secretion system Y89_0048 PF05860 haemagglutination activity domain Y89_0048 PF13332 Hemagglutinin repeat Y89_0049 PF13332 Hemagglutinin repeat Y89_0049 PF05594 Haemagluttinin repeat Y89_0049 PF14436 Bacterial EndoU nuclease Y89_0049 PF05860 haemagglutination activity domain Y89_0049 PF04829 Pre-toxin domain with VENN motif Y89_0053 PF13194 Domain of unknown function (DUF4010) Y89_0054 PF03496 ADP-ribosyltransferase exoenzyme Y89_0054 PF03545 Yersinia virulence determinant (YopE) Y89_0055 PF03783 Curli production assembly/transport component CsgG Y89_0057 PF05643 Putative bacterial lipoprotein (DUF799) Y89_0062 PF00733 Asparagine synthase Y89_0062 PF13537 Glutamine amidotransferase domain Y89_0064 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family Y89_0066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0066 PF03466 LysR substrate binding domain Y89_0069 PF02566 OsmC-like protein Y89_0070 PF06649 Protein of unknown function (DUF1161) Y89_0075 PF13419 Haloacid dehalogenase-like hydrolase Y89_0076 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_0077 PF01432 Peptidase family M3 Y89_0078 PF09526 Probable metal-binding protein (DUF2387) Y89_0079 PF04055 Radical SAM superfamily Y89_0081 PF03781 Sulfatase-modifying factor enzyme 1 Y89_0083 PF12704 MacB-like periplasmic core domain Y89_0083 PF00005 ABC transporter Y89_0083 PF02687 FtsX-like permease family Y89_0084 PF03793 PASTA domain Y89_0084 PF00069 Protein kinase domain Y89_0088 PF00691 OmpA family Y89_0088 PF13677 Membrane MotB of proton-channel complex MotA/MotB Y89_0095 PF05638 Type VI secretion system effector, Hcp Y89_0100 PF17871 AAA lid domain Y89_0100 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_0100 PF00004 ATPase family associated with various cellular activities (AAA) Y89_0100 PF07724 AAA domain (Cdc48 subfamily) Y89_0101 PF04717 Type VI secretion system, phage-baseplate injector Y89_0101 PF16671 Actin cross-linking domain Y89_0106 PF16671 Actin cross-linking domain Y89_0106 PF04717 Type VI secretion system, phage-baseplate injector Y89_0113 PF00484 Carbonic anhydrase Y89_0114 PF01740 STAS domain Y89_0114 PF00916 Sulfate permease family Y89_0116 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Y89_0116 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Y89_0117 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y89_0118 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Y89_0119 PF00510 Cytochrome c oxidase subunit III Y89_0124 PF01040 UbiA prenyltransferase family Y89_0125 PF02630 SCO1/SenC Y89_0126 PF13673 Acetyltransferase (GNAT) domain Y89_0127 PF01638 HxlR-like helix-turn-helix Y89_0129 PF01323 DSBA-like thioredoxin domain Y89_0130 PF00375 Sodium:dicarboxylate symporter family Y89_0131 PF00392 Bacterial regulatory proteins, gntR family Y89_0131 PF07729 FCD domain Y89_0134 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0134 PF03466 LysR substrate binding domain Y89_0139 PF08274 PhnA Zinc-Ribbon Y89_0139 PF03831 PhnA domain Y89_0140 PF13175 AAA ATPase domain Y89_0141 PF01527 Transposase Y89_0142 PF00324 Amino acid permease Y89_0143 PF00171 Aldehyde dehydrogenase family Y89_0144 PF07883 Cupin domain Y89_0145 PF00202 Aminotransferase class-III Y89_0146 PF03466 LysR substrate binding domain Y89_0146 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0147 PF01979 Amidohydrolase family Y89_0149 PF00005 ABC transporter Y89_0152 PF00578 AhpC/TSA family Y89_0152 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y89_0153 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_0153 PF13192 Thioredoxin domain Y89_0154 PF03976 Polyphosphate kinase 2 (PPK2) Y89_0155 PF01979 Amidohydrolase family Y89_0156 PF01156 Inosine-uridine preferring nucleoside hydrolase Y89_0159 PF02608 ABC transporter substrate-binding protein PnrA-like Y89_0160 PF03171 2OG-Fe(II) oxygenase superfamily Y89_0160 PF14226 non-haem dioxygenase in morphine synthesis N-terminal Y89_0161 PF00962 Adenosine/AMP deaminase Y89_0164 PF00593 TonB dependent receptor Y89_0164 PF07715 TonB-dependent Receptor Plug Domain Y89_0165 PF03466 LysR substrate binding domain Y89_0165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0166 PF00775 Dioxygenase Y89_0166 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal Y89_0167 PF00775 Dioxygenase Y89_0168 PF01614 Bacterial transcriptional regulator Y89_0168 PF09339 IclR helix-turn-helix domain Y89_0169 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_0171 PF00873 AcrB/AcrD/AcrF family Y89_0172 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0172 PF03466 LysR substrate binding domain Y89_0174 PF03573 outer membrane porin, OprD family Y89_0178 PF00860 Permease family Y89_0179 PF08362 YcdC-like protein, C-terminal region Y89_0179 PF00440 Bacterial regulatory proteins, tetR family Y89_0180 PF01205 Uncharacterized protein family UPF0029 Y89_0181 PF00072 Response regulator receiver domain Y89_0181 PF00990 Diguanylate cyclase, GGDEF domain Y89_0182 PF09345 Domain of unknown function (DUF1987) Y89_0185 PF00072 Response regulator receiver domain Y89_0185 PF01339 CheB methylesterase Y89_0186 PF03975 CheD chemotactic sensory transduction Y89_0187 PF03705 CheR methyltransferase, all-alpha domain Y89_0187 PF01739 CheR methyltransferase, SAM binding domain Y89_0188 PF02203 Tar ligand binding domain homologue Y89_0188 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_0188 PF00672 HAMP domain Y89_0189 PF01584 CheW-like domain Y89_0190 PF01627 Hpt domain Y89_0190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0190 PF02895 Signal transducing histidine kinase, homodimeric domain Y89_0190 PF09078 CheY binding Y89_0190 PF01584 CheW-like domain Y89_0191 PF00072 Response regulator receiver domain Y89_0192 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_0192 PF12729 Four helix bundle sensory module for signal transduction Y89_0192 PF00672 HAMP domain Y89_0193 PF03466 LysR substrate binding domain Y89_0193 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0195 PF00884 Sulfatase Y89_0196 PF00005 ABC transporter Y89_0197 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0198 PF09084 NMT1/THI5 like Y89_0201 PF03573 outer membrane porin, OprD family Y89_0203 PF03466 LysR substrate binding domain Y89_0203 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0204 PF07715 TonB-dependent Receptor Plug Domain Y89_0204 PF00593 TonB dependent receptor Y89_0205 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y89_0206 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y89_0207 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Y89_0207 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Y89_0208 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Y89_0209 PF02233 NAD(P) transhydrogenase beta subunit Y89_0210 PF03544 Gram-negative bacterial TonB protein C-terminal Y89_0211 PF01618 MotA/TolQ/ExbB proton channel family Y89_0212 PF02472 Biopolymer transport protein ExbD/TolR Y89_0215 PF16957 Malonate decarboxylase, alpha subunit, transporter Y89_0216 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Y89_0217 PF06857 Malonate decarboxylase delta subunit (MdcD) Y89_0218 PF01039 Carboxyl transferase domain Y89_0220 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG Y89_0221 PF00698 Acyl transferase domain Y89_0224 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0224 PF03466 LysR substrate binding domain Y89_0226 PF00171 Aldehyde dehydrogenase family Y89_0227 PF00324 Amino acid permease Y89_0228 PF00202 Aminotransferase class-III Y89_0230 PF00701 Dihydrodipicolinate synthetase family Y89_0231 PF00596 Class II Aldolase and Adducin N-terminal domain Y89_0232 PF08671 Anti-repressor SinI Y89_0232 PF01381 Helix-turn-helix Y89_0233 PF01144 Coenzyme A transferase Y89_0234 PF01144 Coenzyme A transferase Y89_0235 PF00108 Thiolase, N-terminal domain Y89_0235 PF02803 Thiolase, C-terminal domain Y89_0236 PF00083 Sugar (and other) transporter Y89_0237 PF10397 Adenylosuccinate lyase C-terminus Y89_0237 PF00206 Lyase Y89_0238 PF12146 Serine aminopeptidase, S33 Y89_0239 PF02627 Carboxymuconolactone decarboxylase family Y89_0240 PF03466 LysR substrate binding domain Y89_0240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0242 PF07690 Major Facilitator Superfamily Y89_0244 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y89_0244 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Y89_0247 PF03573 outer membrane porin, OprD family Y89_0248 PF07690 Major Facilitator Superfamily Y89_0249 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_0250 PF17938 Tetracyclin repressor-like, C-terminal domain Y89_0250 PF00440 Bacterial regulatory proteins, tetR family Y89_0251 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Y89_0251 PF08501 Shikimate dehydrogenase substrate binding domain Y89_0252 PF01220 Dehydroquinase class II Y89_0253 PF07690 Major Facilitator Superfamily Y89_0254 PF01494 FAD binding domain Y89_0257 PF01769 Divalent cation transporter Y89_0257 PF03448 MgtE intracellular N domain Y89_0257 PF00571 CBS domain Y89_0260 PF01047 MarR family Y89_0261 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Y89_0263 PF06912 Protein of unknown function (DUF1275) Y89_0270 PF04717 Type VI secretion system, phage-baseplate injector Y89_0271 PF05638 Type VI secretion system effector, Hcp Y89_0282 PF14659 Phage integrase, N-terminal SAM-like domain Y89_0282 PF13356 Arm DNA-binding domain Y89_0282 PF00589 Phage integrase family Y89_0283 PF00171 Aldehyde dehydrogenase family Y89_0284 PF00202 Aminotransferase class-III Y89_0285 PF00072 Response regulator receiver domain Y89_0286 PF00155 Aminotransferase class I and II Y89_0286 PF00392 Bacterial regulatory proteins, gntR family Y89_0287 PF02627 Carboxymuconolactone decarboxylase family Y89_0290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0290 PF03466 LysR substrate binding domain Y89_0291 PF07690 Major Facilitator Superfamily Y89_0295 PF01435 Peptidase family M48 Y89_0298 PF00005 ABC transporter Y89_0298 PF12857 TOBE-like domain Y89_0299 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0300 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0303 PF03707 Bacterial signalling protein N terminal repeat Y89_0303 PF00990 Diguanylate cyclase, GGDEF domain Y89_0303 PF00563 EAL domain Y89_0305 PF00474 Sodium:solute symporter family Y89_0306 PF00491 Arginase family Y89_0307 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0307 PF03466 LysR substrate binding domain Y89_0308 PF00990 Diguanylate cyclase, GGDEF domain Y89_0308 PF17158 Membrane-associated sensor, integral membrane domain Y89_0309 PF03573 outer membrane porin, OprD family Y89_0310 PF04371 Porphyromonas-type peptidyl-arginine deiminase Y89_0313 PF13416 Bacterial extracellular solute-binding protein Y89_0314 PF00120 Glutamine synthetase, catalytic domain Y89_0315 PF07722 Peptidase C26 Y89_0316 PF00120 Glutamine synthetase, catalytic domain Y89_0317 PF00202 Aminotransferase class-III Y89_0318 PF13416 Bacterial extracellular solute-binding protein Y89_0319 PF13416 Bacterial extracellular solute-binding protein Y89_0320 PF08402 TOBE domain Y89_0320 PF00005 ABC transporter Y89_0321 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0322 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0323 PF01804 Penicillin amidase Y89_0334 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_0336 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_0336 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_0337 PF01565 FAD binding domain Y89_0337 PF02913 FAD linked oxidases, C-terminal domain Y89_0338 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_0340 PF04076 Bacterial OB fold (BOF) protein Y89_0341 PF00850 Histone deacetylase domain Y89_0342 PF00324 Amino acid permease Y89_0343 PF01547 Bacterial extracellular solute-binding protein Y89_0344 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0345 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0346 PF00005 ABC transporter Y89_0346 PF08402 TOBE domain Y89_0347 PF06977 SdiA-regulated Y89_0348 PF04389 Peptidase family M28 Y89_0349 PF07411 Domain of unknown function (DUF1508) Y89_0350 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Y89_0351 PF00291 Pyridoxal-phosphate dependent enzyme Y89_0351 PF00585 C-terminal regulatory domain of Threonine dehydratase Y89_0353 PF13460 NAD(P)H-binding Y89_0353 PF11066 Protein of unknown function (DUF2867) Y89_0357 PF00293 NUDIX domain Y89_0358 PF05524 PEP-utilising enzyme, N-terminal Y89_0358 PF01590 GAF domain Y89_0358 PF02896 PEP-utilising enzyme, TIM barrel domain Y89_0358 PF00391 PEP-utilising enzyme, mobile domain Y89_0359 PF08448 PAS fold Y89_0359 PF00990 Diguanylate cyclase, GGDEF domain Y89_0361 PF01925 Sulfite exporter TauE/SafE Y89_0362 PF01790 Prolipoprotein diacylglyceryl transferase Y89_0363 PF00303 Thymidylate synthase Y89_0368 PF03009 Glycerophosphoryl diester phosphodiesterase family Y89_0371 PF00186 Dihydrofolate reductase Y89_0372 PF12850 Calcineurin-like phosphoesterase superfamily domain Y89_0373 PF00860 Permease family Y89_0374 PF00920 Dehydratase family Y89_0375 PF10672 S-adenosylmethionine-dependent methyltransferase Y89_0375 PF17785 PUA-like domain Y89_0376 PF01965 DJ-1/PfpI family Y89_0378 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Y89_0378 PF06827 Zinc finger found in FPG and IleRS Y89_0378 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Y89_0383 PF00037 4Fe-4S binding domain Y89_0384 PF01467 Cytidylyltransferase-like Y89_0385 PF00732 GMC oxidoreductase Y89_0385 PF05199 GMC oxidoreductase Y89_0387 PF00171 Aldehyde dehydrogenase family Y89_0388 PF00440 Bacterial regulatory proteins, tetR family Y89_0390 PF00561 alpha/beta hydrolase fold Y89_0393 PF05193 Peptidase M16 inactive domain Y89_0394 PF05193 Peptidase M16 inactive domain Y89_0394 PF00675 Insulinase (Peptidase family M16) Y89_0395 PF02881 SRP54-type protein, helical bundle domain Y89_0395 PF00448 SRP54-type protein, GTPase domain Y89_0396 PF00005 ABC transporter Y89_0397 PF18075 FtsX extracellular domain Y89_0398 PF04545 Sigma-70, region 4 Y89_0398 PF00140 Sigma-70 factor, region 1.2 Y89_0398 PF04542 Sigma-70 region 2 Y89_0400 PF00912 Transglycosylase Y89_0401 PF04241 Protein of unknown function (DUF423) Y89_0402 PF02597 ThiS family Y89_0402 PF05690 Thiazole biosynthesis protein ThiG Y89_0403 PF05690 Thiazole biosynthesis protein ThiG Y89_0404 PF02390 Putative methyltransferase Y89_0405 PF07044 Protein of unknown function (DUF1329) Y89_0408 PF04055 Radical SAM superfamily Y89_0408 PF06969 HemN C-terminal domain Y89_0409 PF01725 Ham1 family Y89_0411 PF00561 alpha/beta hydrolase fold Y89_0411 PF07021 Methionine biosynthesis protein MetW Y89_0412 PF00561 alpha/beta hydrolase fold Y89_0413 PF01926 50S ribosome-binding GTPase Y89_0413 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Y89_0414 PF02594 Uncharacterised ACR, YggU family COG1872 Y89_0415 PF02325 YGGT family Y89_0416 PF14748 Pyrroline-5-carboxylate reductase dimerisation Y89_0416 PF03807 NADP oxidoreductase coenzyme F420-dependent Y89_0417 PF01168 Alanine racemase, N-terminal domain Y89_0418 PF00437 Type II/IV secretion system protein Y89_0419 PF00437 Type II/IV secretion system protein Y89_0420 PF01545 Cation efflux family Y89_0422 PF00571 CBS domain Y89_0422 PF00291 Pyridoxal-phosphate dependent enzyme Y89_0423 PF01053 Cys/Met metabolism PLP-dependent enzyme Y89_0424 PF01979 Amidohydrolase family Y89_0425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Y89_0425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Y89_0426 PF00156 Phosphoribosyl transferase domain Y89_0427 PF03652 Holliday junction resolvase Y89_0428 PF02622 Uncharacterized ACR, COG1678 Y89_0430 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Y89_0430 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Y89_0431 PF00072 Response regulator receiver domain Y89_0433 PF01584 CheW-like domain Y89_0434 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Y89_0434 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_0435 PF03705 CheR methyltransferase, all-alpha domain Y89_0435 PF01739 CheR methyltransferase, SAM binding domain Y89_0436 PF00072 Response regulator receiver domain Y89_0436 PF01627 Hpt domain Y89_0436 PF01584 CheW-like domain Y89_0436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0437 PF01339 CheB methylesterase Y89_0440 PF01810 LysE type translocator Y89_0442 PF04452 RNA methyltransferase Y89_0443 PF00202 Aminotransferase class-III Y89_0445 PF01292 Prokaryotic cytochrome b561 Y89_0446 PF04264 YceI-like domain Y89_0447 PF01047 MarR family Y89_0448 PF00529 HlyD membrane-fusion protein of T1SS Y89_0448 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_0449 PF00873 AcrB/AcrD/AcrF family Y89_0450 PF08139 Prokaryotic membrane lipoprotein lipid attachment site Y89_0450 PF02321 Outer membrane efflux protein Y89_0451 PF00270 DEAD/DEAH box helicase Y89_0451 PF00271 Helicase conserved C-terminal domain Y89_0453 PF02219 Methylenetetrahydrofolate reductase Y89_0455 PF05221 S-adenosyl-L-homocysteine hydrolase Y89_0455 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Y89_0457 PF07660 Secretin and TonB N terminus short domain Y89_0457 PF07715 TonB-dependent Receptor Plug Domain Y89_0457 PF00593 TonB dependent receptor Y89_0459 PF00440 Bacterial regulatory proteins, tetR family Y89_0459 PF08362 YcdC-like protein, C-terminal region Y89_0460 PF07969 Amidohydrolase family Y89_0461 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y89_0462 PF01180 Dihydroorotate dehydrogenase Y89_0463 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_0463 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Y89_0464 PF01979 Amidohydrolase family Y89_0465 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y89_0466 PF01546 Peptidase family M20/M25/M40 Y89_0466 PF07687 Peptidase dimerisation domain Y89_0467 PF02515 CoA-transferase family III Y89_0468 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_0468 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_0468 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_0469 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0469 PF03466 LysR substrate binding domain Y89_0471 PF01384 Phosphate transporter family Y89_0473 PF01145 SPFH domain / Band 7 family Y89_0473 PF16200 C-terminal region of band_7 Y89_0475 PF12805 FUSC-like inner membrane protein yccS Y89_0476 PF03880 DbpA RNA binding domain Y89_0476 PF00270 DEAD/DEAH box helicase Y89_0476 PF00271 Helicase conserved C-terminal domain Y89_0477 PF00313 'Cold-shock' DNA-binding domain Y89_0478 PF18030 RimK PreATP-grasp domain Y89_0478 PF08443 RimK-like ATP-grasp domain Y89_0479 PF07690 Major Facilitator Superfamily Y89_0480 PF02861 Clp amino terminal domain, pathogenicity island component Y89_0480 PF00004 ATPase family associated with various cellular activities (AAA) Y89_0480 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_0480 PF17871 AAA lid domain Y89_0480 PF07724 AAA domain (Cdc48 subfamily) Y89_0482 PF01553 Acyltransferase Y89_0484 PF00072 Response regulator receiver domain Y89_0484 PF00486 Transcriptional regulatory protein, C terminal Y89_0485 PF00672 HAMP domain Y89_0485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0485 PF00512 His Kinase A (phospho-acceptor) domain Y89_0486 PF06123 Inner membrane protein CreD Y89_0491 PF07715 TonB-dependent Receptor Plug Domain Y89_0491 PF00593 TonB dependent receptor Y89_0492 PF04773 FecR protein Y89_0492 PF16220 Domain of unknown function (DUF4880) Y89_0493 PF04542 Sigma-70 region 2 Y89_0493 PF08281 Sigma-70, region 4 Y89_0494 PF00043 Glutathione S-transferase, C-terminal domain Y89_0494 PF13417 Glutathione S-transferase, N-terminal domain Y89_0495 PF03061 Thioesterase superfamily Y89_0496 PF00440 Bacterial regulatory proteins, tetR family Y89_0497 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y89_0498 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0498 PF03466 LysR substrate binding domain Y89_0501 PF12146 Serine aminopeptidase, S33 Y89_0504 PF01274 Malate synthase Y89_0507 PF00892 EamA-like transporter family Y89_0508 PF01636 Phosphotransferase enzyme family Y89_0509 PF03459 TOBE domain Y89_0509 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0510 PF10043 Predicted periplasmic lipoprotein (DUF2279) Y89_0511 PF00156 Phosphoribosyl transferase domain Y89_0513 PF03466 LysR substrate binding domain Y89_0513 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0514 PF03746 LamB/YcsF family Y89_0515 PF00364 Biotin-requiring enzyme Y89_0516 PF02785 Biotin carboxylase C-terminal domain Y89_0516 PF00289 Biotin carboxylase, N-terminal domain Y89_0516 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_0518 PF02626 Carboxyltransferase domain, subdomain A and B Y89_0520 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y89_0520 PF02753 Pili assembly chaperone PapD, C-terminal domain Y89_0521 PF04055 Radical SAM superfamily Y89_0521 PF06968 Biotin and Thiamin Synthesis associated domain Y89_0522 PF00155 Aminotransferase class I and II Y89_0523 PF08241 Methyltransferase domain Y89_0523 PF12697 Alpha/beta hydrolase family Y89_0524 PF08241 Methyltransferase domain Y89_0527 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_0527 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_0527 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_0527 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y89_0528 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y89_0528 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_0528 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_0528 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_0529 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y89_0529 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_0529 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_0529 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_0531 PF10414 Sirohaem synthase dimerisation region Y89_0531 PF14824 Sirohaem biosynthesis protein central Y89_0531 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_0532 PF04055 Radical SAM superfamily Y89_0532 PF06463 Molybdenum Cofactor Synthesis C Y89_0533 PF17805 AsnC-like ligand binding domain Y89_0534 PF17805 AsnC-like ligand binding domain Y89_0535 PF17805 AsnC-like ligand binding domain Y89_0536 PF13404 AsnC-type helix-turn-helix domain Y89_0536 PF17805 AsnC-like ligand binding domain Y89_0538 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_0539 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_0540 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_0541 PF07728 AAA domain (dynein-related subfamily) Y89_0541 PF08406 CbbQ/NirQ/NorQ C-terminal Y89_0542 PF00510 Cytochrome c oxidase subunit III Y89_0543 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Y89_0544 PF00034 Cytochrome c Y89_0548 PF13545 Crp-like helix-turn-helix domain Y89_0548 PF00027 Cyclic nucleotide-binding domain Y89_0549 PF03466 LysR substrate binding domain Y89_0549 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0550 PF03473 MOSC domain Y89_0550 PF03475 3-alpha domain Y89_0552 PF00202 Aminotransferase class-III Y89_0553 PF00117 Glutamine amidotransferase class-I Y89_0555 PF00196 Bacterial regulatory proteins, luxR family Y89_0556 PF01266 FAD dependent oxidoreductase Y89_0558 PF04536 TPM domain Y89_0560 PF02600 Disulfide bond formation protein DsbB Y89_0568 PF00438 S-adenosylmethionine synthetase, N-terminal domain Y89_0568 PF02773 S-adenosylmethionine synthetase, C-terminal domain Y89_0568 PF02772 S-adenosylmethionine synthetase, central domain Y89_0570 PF02780 Transketolase, C-terminal domain Y89_0570 PF00456 Transketolase, thiamine diphosphate binding domain Y89_0570 PF02779 Transketolase, pyrimidine binding domain Y89_0572 PF01261 Xylose isomerase-like TIM barrel Y89_0573 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y89_0573 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Y89_0574 PF00162 Phosphoglycerate kinase Y89_0577 PF01116 Fructose-bisphosphate aldolase class-II Y89_0580 PF08241 Methyltransferase domain Y89_0583 PF13419 Haloacid dehalogenase-like hydrolase Y89_0584 PF05656 Protein of unknown function (DUF805) Y89_0585 PF12833 Helix-turn-helix domain Y89_0585 PF02311 AraC-like ligand binding domain Y89_0586 PF02627 Carboxymuconolactone decarboxylase family Y89_0588 PF01679 Proteolipid membrane potential modulator Y89_0592 PF09234 Domain of unknown function (DUF1963) Y89_0593 PF13402 Peptidase M60, enhancin and enhancin-like Y89_0593 PF18642 Immunomodulating metalloprotease helical domain Y89_0593 PF18650 Immunomodulating metalloprotease N-terminal domain Y89_0596 PF01434 Peptidase family M41 Y89_0596 PF06480 FtsH Extracellular Y89_0596 PF17862 AAA+ lid domain Y89_0596 PF00004 ATPase family associated with various cellular activities (AAA) Y89_0601 PF00665 Integrase core domain Y89_0601 PF13936 Helix-turn-helix domain Y89_0602 PF00665 Integrase core domain Y89_0614 PF07484 Phage Tail Collar Domain Y89_0621 PF00959 Phage lysozyme Y89_0646 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Y89_0647 PF03707 Bacterial signalling protein N terminal repeat Y89_0647 PF00990 Diguanylate cyclase, GGDEF domain Y89_0647 PF00563 EAL domain Y89_0648 PF04545 Sigma-70, region 4 Y89_0648 PF03979 Sigma-70 factor, region 1.1 Y89_0648 PF04546 Sigma-70, non-essential region Y89_0648 PF04539 Sigma-70 region 3 Y89_0648 PF04542 Sigma-70 region 2 Y89_0648 PF00140 Sigma-70 factor, region 1.2 Y89_0649 PF01807 CHC2 zinc finger Y89_0649 PF08275 DNA primase catalytic core, N-terminal domain Y89_0649 PF13662 Toprim domain Y89_0649 PF08278 DNA primase DnaG DnaB-binding Y89_0649 PF10410 DnaB-helicase binding domain of primase Y89_0651 PF01165 Ribosomal protein S21 Y89_0652 PF00814 Glycoprotease family Y89_0653 PF02660 Glycerol-3-phosphate acyltransferase Y89_0654 PF02152 Dihydroneopterin aldolase Y89_0656 PF12627 Probable RNA and SrmB- binding site of polymerase A Y89_0656 PF01743 Poly A polymerase head domain Y89_0656 PF01966 HD domain Y89_0658 PF04293 SpoVR like protein Y89_0659 PF04285 Protein of unknown function (DUF444) Y89_0660 PF08298 PrkA AAA domain Y89_0660 PF06798 PrkA serine protein kinase C-terminal domain Y89_0661 PF00581 Rhodanese-like domain Y89_0662 PF00149 Calcineurin-like phosphoesterase Y89_0663 PF04379 ApaG domain Y89_0664 PF00398 Ribosomal RNA adenine dimethylase Y89_0665 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Y89_0666 PF00639 PPIC-type PPIASE domain Y89_0666 PF09312 SurA N-terminal domain Y89_0667 PF04453 LPS transport system D Y89_0667 PF03968 OstA-like protein Y89_0668 PF01348 Type II intron maturase Y89_0668 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Y89_0670 PF01636 Phosphotransferase enzyme family Y89_0671 PF00483 Nucleotidyl transferase Y89_0672 PF05099 Tellurite resistance protein TerB Y89_0672 PF00226 DnaJ domain Y89_0674 PF07730 Histidine kinase Y89_0674 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0675 PF00072 Response regulator receiver domain Y89_0675 PF00196 Bacterial regulatory proteins, luxR family Y89_0677 PF08402 TOBE domain Y89_0677 PF00005 ABC transporter Y89_0679 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0680 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0681 PF00834 Ribulose-phosphate 3 epimerase family Y89_0682 PF13419 Haloacid dehalogenase-like hydrolase Y89_0683 PF04715 Anthranilate synthase component I, N terminal region Y89_0683 PF00425 chorismate binding enzyme Y89_0684 PF11112 Pyocin activator protein PrtN Y89_0685 PF00717 Peptidase S24-like Y89_0685 PF01381 Helix-turn-helix Y89_0696 PF04984 Phage tail sheath protein subtilisin-like domain Y89_0696 PF17482 Phage tail sheath C-terminal domain Y89_0703 PF00182 Chitinase class I Y89_0722 PF00117 Glutamine amidotransferase class-I Y89_0723 PF00591 Glycosyl transferase family, a/b domain Y89_0723 PF02885 Glycosyl transferase family, helical bundle domain Y89_0724 PF00218 Indole-3-glycerol phosphate synthase Y89_0725 PF13545 Crp-like helix-turn-helix domain Y89_0725 PF00027 Cyclic nucleotide-binding domain Y89_0726 PF02566 OsmC-like protein Y89_0727 PF02675 S-adenosylmethionine decarboxylase Y89_0728 PF03232 Ubiquinone biosynthesis protein COQ7 Y89_0729 PF01230 HIT domain Y89_0730 PF01434 Peptidase family M41 Y89_0730 PF06480 FtsH Extracellular Y89_0730 PF17862 AAA+ lid domain Y89_0730 PF00004 ATPase family associated with various cellular activities (AAA) Y89_0731 PF00106 short chain dehydrogenase Y89_0733 PF03060 Nitronate monooxygenase Y89_0735 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y89_0735 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y89_0738 PF01521 Iron-sulphur cluster biosynthesis Y89_0739 PF03702 Anhydro-N-acetylmuramic acid kinase Y89_0740 PF01551 Peptidase family M23 Y89_0740 PF04225 Opacity-associated protein A LysM-like domain Y89_0741 PF00579 tRNA synthetases class I (W and Y) Y89_0742 PF03099 Biotin/lipoate A/B protein ligase family Y89_0742 PF02237 Biotin protein ligase C terminal domain Y89_0742 PF08279 HTH domain Y89_0743 PF03309 Type III pantothenate kinase Y89_0745 PF00009 Elongation factor Tu GTP binding domain Y89_0745 PF03144 Elongation factor Tu domain 2 Y89_0745 PF03143 Elongation factor Tu C-terminal domain Y89_0747 PF02357 Transcription termination factor nusG Y89_0747 PF00467 KOW motif Y89_0748 PF00298 Ribosomal protein L11, RNA binding domain Y89_0748 PF03946 Ribosomal protein L11, N-terminal domain Y89_0749 PF00687 Ribosomal protein L1p/L10e family Y89_0750 PF00466 Ribosomal protein L10 Y89_0751 PF16320 Ribosomal protein L7/L12 dimerisation domain Y89_0751 PF00542 Ribosomal protein L7/L12 C-terminal domain Y89_0752 PF00562 RNA polymerase Rpb2, domain 6 Y89_0752 PF10385 RNA polymerase beta subunit external 1 domain Y89_0752 PF04560 RNA polymerase Rpb2, domain 7 Y89_0752 PF04563 RNA polymerase beta subunit Y89_0752 PF04561 RNA polymerase Rpb2, domain 2 Y89_0752 PF04565 RNA polymerase Rpb2, domain 3 Y89_0753 PF05000 RNA polymerase Rpb1, domain 4 Y89_0753 PF04997 RNA polymerase Rpb1, domain 1 Y89_0753 PF00623 RNA polymerase Rpb1, domain 2 Y89_0753 PF04983 RNA polymerase Rpb1, domain 3 Y89_0753 PF04998 RNA polymerase Rpb1, domain 5 Y89_0754 PF00164 Ribosomal protein S12/S23 Y89_0755 PF00177 Ribosomal protein S7p/S5e Y89_0756 PF03764 Elongation factor G, domain IV Y89_0756 PF00009 Elongation factor Tu GTP binding domain Y89_0756 PF03144 Elongation factor Tu domain 2 Y89_0756 PF00679 Elongation factor G C-terminus Y89_0756 PF14492 Elongation Factor G, domain II Y89_0757 PF03144 Elongation factor Tu domain 2 Y89_0757 PF03143 Elongation factor Tu C-terminal domain Y89_0757 PF00009 Elongation factor Tu GTP binding domain Y89_0758 PF00338 Ribosomal protein S10p/S20e Y89_0759 PF00297 Ribosomal protein L3 Y89_0760 PF00573 Ribosomal protein L4/L1 family Y89_0761 PF00276 Ribosomal protein L23 Y89_0762 PF03947 Ribosomal Proteins L2, C-terminal domain Y89_0762 PF00181 Ribosomal Proteins L2, RNA binding domain Y89_0763 PF00203 Ribosomal protein S19 Y89_0764 PF00237 Ribosomal protein L22p/L17e Y89_0765 PF07650 KH domain Y89_0765 PF00189 Ribosomal protein S3, C-terminal domain Y89_0766 PF00252 Ribosomal protein L16p/L10e Y89_0767 PF00831 Ribosomal L29 protein Y89_0768 PF00366 Ribosomal protein S17 Y89_0769 PF00238 Ribosomal protein L14p/L23e Y89_0770 PF00467 KOW motif Y89_0770 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Y89_0771 PF00673 ribosomal L5P family C-terminus Y89_0771 PF00281 Ribosomal protein L5 Y89_0772 PF00253 Ribosomal protein S14p/S29e Y89_0773 PF00410 Ribosomal protein S8 Y89_0774 PF00347 Ribosomal protein L6 Y89_0775 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Y89_0776 PF03719 Ribosomal protein S5, C-terminal domain Y89_0776 PF00333 Ribosomal protein S5, N-terminal domain Y89_0777 PF00327 Ribosomal protein L30p/L7e Y89_0778 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Y89_0779 PF00344 SecY translocase Y89_0780 PF00444 Ribosomal protein L36 Y89_0781 PF00416 Ribosomal protein S13/S18 Y89_0782 PF00411 Ribosomal protein S11 Y89_0783 PF01479 S4 domain Y89_0783 PF00163 Ribosomal protein S4/S9 N-terminal domain Y89_0784 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Y89_0784 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Y89_0784 PF01000 RNA polymerase Rpb3/RpoA insert domain Y89_0785 PF01196 Ribosomal protein L17 Y89_0786 PF00199 Catalase Y89_0786 PF06628 Catalase-related immune-responsive Y89_0787 PF00210 Ferritin-like domain Y89_0788 PF17760 UvrA interaction domain Y89_0788 PF17755 UvrA DNA-binding domain Y89_0789 PF07690 Major Facilitator Superfamily Y89_0790 PF00436 Single-strand binding protein family Y89_0791 PF00425 chorismate binding enzyme Y89_0792 PF01817 Chorismate mutase type II Y89_0793 PF00975 Thioesterase domain Y89_0794 PF13193 AMP-binding enzyme C-terminal domain Y89_0794 PF00501 AMP-binding enzyme Y89_0795 PF12833 Helix-turn-helix domain Y89_0796 PF08242 Methyltransferase domain Y89_0796 PF00550 Phosphopantetheine attachment site Y89_0796 PF00501 AMP-binding enzyme Y89_0796 PF00668 Condensation domain Y89_0797 PF00550 Phosphopantetheine attachment site Y89_0797 PF08242 Methyltransferase domain Y89_0797 PF00668 Condensation domain Y89_0797 PF00501 AMP-binding enzyme Y89_0799 PF04954 Siderophore-interacting protein Y89_0799 PF08021 Siderophore-interacting FAD-binding domain Y89_0799 PF00005 ABC transporter Y89_0799 PF00664 ABC transporter transmembrane region Y89_0800 PF00005 ABC transporter Y89_0801 PF07715 TonB-dependent Receptor Plug Domain Y89_0801 PF00593 TonB dependent receptor Y89_0803 PF03929 PepSY-associated TM region Y89_0805 PF01494 FAD binding domain Y89_0806 PF01243 Pyridoxamine 5'-phosphate oxidase Y89_0806 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Y89_0807 PF02567 Phenazine biosynthesis-like protein Y89_0808 PF00425 chorismate binding enzyme Y89_0808 PF00117 Glutamine amidotransferase class-I Y89_0809 PF00857 Isochorismatase family Y89_0810 PF01474 Class-II DAHP synthetase family Y89_0811 PF03284 Phenazine biosynthesis protein A/B Y89_0812 PF03284 Phenazine biosynthesis protein A/B Y89_0813 PF00891 O-methyltransferase domain Y89_0813 PF16864 Dimerisation domain Y89_0814 PF02321 Outer membrane efflux protein Y89_0815 PF00873 AcrB/AcrD/AcrF family Y89_0816 PF13533 Biotin-lipoyl like Y89_0818 PF10282 Lactonase, 7-bladed beta-propeller Y89_0819 PF03466 LysR substrate binding domain Y89_0819 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0820 PF03060 Nitronate monooxygenase Y89_0821 PF01820 D-ala D-ala ligase N-terminus Y89_0821 PF07478 D-ala D-ala ligase C-terminus Y89_0822 PF00753 Metallo-beta-lactamase superfamily Y89_0823 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y89_0823 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_0823 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_0823 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_0824 PF13193 AMP-binding enzyme C-terminal domain Y89_0824 PF00501 AMP-binding enzyme Y89_0825 PF00512 His Kinase A (phospho-acceptor) domain Y89_0825 PF00989 PAS fold Y89_0825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0826 PF00196 Bacterial regulatory proteins, luxR family Y89_0826 PF00072 Response regulator receiver domain Y89_0827 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_0828 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0829 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0830 PF00005 ABC transporter Y89_0831 PF03171 2OG-Fe(II) oxygenase superfamily Y89_0831 PF14226 non-haem dioxygenase in morphine synthesis N-terminal Y89_0833 PF00171 Aldehyde dehydrogenase family Y89_0834 PF00701 Dihydrodipicolinate synthetase family Y89_0835 PF00083 Sugar (and other) transporter Y89_0837 PF00392 Bacterial regulatory proteins, gntR family Y89_0837 PF07729 FCD domain Y89_0838 PF01965 DJ-1/PfpI family Y89_0838 PF12833 Helix-turn-helix domain Y89_0842 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_0842 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_0842 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_0843 PF03573 outer membrane porin, OprD family Y89_0844 PF13649 Methyltransferase domain Y89_0846 PF05698 Bacterial trigger factor protein (TF) C-terminus Y89_0848 PF03466 LysR substrate binding domain Y89_0848 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0849 PF01042 Endoribonuclease L-PSP Y89_0851 PF01965 DJ-1/PfpI family Y89_0852 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_0853 PF02082 Transcriptional regulator Y89_0854 PF07660 Secretin and TonB N terminus short domain Y89_0854 PF07715 TonB-dependent Receptor Plug Domain Y89_0854 PF00593 TonB dependent receptor Y89_0855 PF00248 Aldo/keto reductase family Y89_0857 PF00392 Bacterial regulatory proteins, gntR family Y89_0857 PF00155 Aminotransferase class I and II Y89_0859 PF01425 Amidase Y89_0861 PF01032 FecCD transport family Y89_0862 PF01032 FecCD transport family Y89_0863 PF01497 Periplasmic binding protein Y89_0864 PF00005 ABC transporter Y89_0866 PF07715 TonB-dependent Receptor Plug Domain Y89_0868 PF08239 Bacterial SH3 domain Y89_0869 PF00107 Zinc-binding dehydrogenase Y89_0869 PF08240 Alcohol dehydrogenase GroES-like domain Y89_0870 PF00364 Biotin-requiring enzyme Y89_0870 PF00561 alpha/beta hydrolase fold Y89_0871 PF02780 Transketolase, C-terminal domain Y89_0871 PF02779 Transketolase, pyrimidine binding domain Y89_0873 PF01513 ATP-NAD kinase Y89_0875 PF02954 Bacterial regulatory protein, Fis family Y89_0875 PF00158 Sigma-54 interaction domain Y89_0875 PF01590 GAF domain Y89_0879 PF00664 ABC transporter transmembrane region Y89_0879 PF00005 ABC transporter Y89_0879 PF03412 Peptidase C39 family Y89_0884 PF00579 tRNA synthetases class I (W and Y) Y89_0885 PF03573 outer membrane porin, OprD family Y89_0886 PF07690 Major Facilitator Superfamily Y89_0887 PF01047 MarR family Y89_0889 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y89_0890 PF00155 Aminotransferase class I and II Y89_0890 PF00392 Bacterial regulatory proteins, gntR family Y89_0891 PF12801 4Fe-4S binding domain Y89_0891 PF13746 4Fe-4S dicluster domain Y89_0891 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Y89_0892 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y89_0892 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y89_0894 PF03328 HpcH/HpaI aldolase/citrate lyase family Y89_0895 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_0896 PF07690 Major Facilitator Superfamily Y89_0897 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase Y89_0898 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Y89_0899 PF00171 Aldehyde dehydrogenase family Y89_0900 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_0901 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_0903 PF01636 Phosphotransferase enzyme family Y89_0905 PF00360 Phytochrome region Y89_0905 PF00512 His Kinase A (phospho-acceptor) domain Y89_0905 PF08446 PAS fold Y89_0905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0905 PF01590 GAF domain Y89_0907 PF03641 Possible lysine decarboxylase Y89_0907 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases Y89_0907 PF11892 Domain of unknown function (DUF3412) Y89_0909 PF07690 Major Facilitator Superfamily Y89_0910 PF00072 Response regulator receiver domain Y89_0910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0910 PF00512 His Kinase A (phospho-acceptor) domain Y89_0910 PF01627 Hpt domain Y89_0910 PF00672 HAMP domain Y89_0910 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y89_0912 PF00144 Beta-lactamase Y89_0913 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0913 PF03466 LysR substrate binding domain Y89_0915 PF01966 HD domain Y89_0915 PF11871 Domain of unknown function (DUF3391) Y89_0917 PF05114 Protein of unknown function (DUF692) Y89_0919 PF07681 DoxX Y89_0921 PF00512 His Kinase A (phospho-acceptor) domain Y89_0921 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0921 PF16527 Two-component sensor protein CpxA, periplasmic domain Y89_0921 PF00672 HAMP domain Y89_0922 PF00072 Response regulator receiver domain Y89_0922 PF00486 Transcriptional regulatory protein, C terminal Y89_0924 PF05199 GMC oxidoreductase Y89_0924 PF00732 GMC oxidoreductase Y89_0927 PF08240 Alcohol dehydrogenase GroES-like domain Y89_0927 PF00107 Zinc-binding dehydrogenase Y89_0928 PF07690 Major Facilitator Superfamily Y89_0932 PF01613 Flavin reductase like domain Y89_0933 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal Y89_0933 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal Y89_0936 PF00202 Aminotransferase class-III Y89_0937 PF10703 MoaF N-terminal domain Y89_0937 PF17409 MoaF C-terminal domain Y89_0939 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y89_0939 PF02753 Pili assembly chaperone PapD, C-terminal domain Y89_0940 PF13954 PapC N-terminal domain Y89_0940 PF13953 PapC C-terminal domain Y89_0940 PF00577 Outer membrane usher protein Y89_0941 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y89_0941 PF02753 Pili assembly chaperone PapD, C-terminal domain Y89_0942 PF05860 haemagglutination activity domain Y89_0944 PF00072 Response regulator receiver domain Y89_0944 PF00196 Bacterial regulatory proteins, luxR family Y89_0945 PF00106 short chain dehydrogenase Y89_0946 PF13193 AMP-binding enzyme C-terminal domain Y89_0946 PF00550 Phosphopantetheine attachment site Y89_0946 PF00668 Condensation domain Y89_0946 PF00501 AMP-binding enzyme Y89_0947 PF01381 Helix-turn-helix Y89_0947 PF09856 Predicted transcriptional regulator (DUF2083) Y89_0947 PF06114 IrrE N-terminal-like domain Y89_0951 PF00171 Aldehyde dehydrogenase family Y89_0952 PF13520 Amino acid permease Y89_0954 PF12852 Cupin Y89_0954 PF12833 Helix-turn-helix domain Y89_0956 PF16363 GDP-mannose 4,6 dehydratase Y89_0957 PF04247 Invasion gene expression up-regulator, SirB Y89_0958 PF03922 OmpW family Y89_0961 PF00005 ABC transporter Y89_0961 PF12704 MacB-like periplasmic core domain Y89_0961 PF02687 FtsX-like permease family Y89_0964 PF00085 Thioredoxin Y89_0967 PF03477 ATP cone domain Y89_0968 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Y89_0968 PF01872 RibD C-terminal domain Y89_0969 PF00677 Lumazine binding domain Y89_0970 PF00925 GTP cyclohydrolase II Y89_0970 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Y89_0971 PF00885 6,7-dimethyl-8-ribityllumazine synthase Y89_0972 PF01029 NusB family Y89_0973 PF02769 AIR synthase related protein, C-terminal domain Y89_0973 PF00586 AIR synthase related protein, N-terminal domain Y89_0974 PF04608 Phosphatidylglycerophosphatase A Y89_0977 PF00925 GTP cyclohydrolase II Y89_0979 PF01497 Periplasmic binding protein Y89_0980 PF02779 Transketolase, pyrimidine binding domain Y89_0980 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Y89_0980 PF02780 Transketolase, C-terminal domain Y89_0981 PF00348 Polyprenyl synthetase Y89_0982 PF02609 Exonuclease VII small subunit Y89_0983 PF13378 Enolase C-terminal domain-like Y89_0987 PF00005 ABC transporter Y89_0988 PF00512 His Kinase A (phospho-acceptor) domain Y89_0988 PF00672 HAMP domain Y89_0988 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0988 PF18698 Histidine kinase sensor domain Y89_0988 PF00989 PAS fold Y89_0990 PF00230 Major intrinsic protein Y89_0992 PF00486 Transcriptional regulatory protein, C terminal Y89_0992 PF00072 Response regulator receiver domain Y89_0993 PF00719 Inorganic pyrophosphatase Y89_0994 PF06167 Glucose-regulated metallo-peptidase M90 Y89_0995 PF09335 SNARE associated Golgi protein Y89_0996 PF00069 Protein kinase domain Y89_0998 PF00583 Acetyltransferase (GNAT) family Y89_0999 PF05985 Ethanolamine ammonia-lyase light chain (EutC) Y89_1000 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Y89_1001 PF13520 Amino acid permease Y89_1002 PF00171 Aldehyde dehydrogenase family Y89_1003 PF01590 GAF domain Y89_1003 PF02954 Bacterial regulatory protein, Fis family Y89_1003 PF00158 Sigma-54 interaction domain Y89_1004 PF08245 Mur ligase middle domain Y89_1004 PF01225 Mur ligase family, catalytic domain Y89_1004 PF02875 Mur ligase family, glutamate ligase domain Y89_1005 PF02441 Flavoprotein Y89_1007 PF13460 NAD(P)H-binding Y89_1010 PF03788 LrgA family Y89_1011 PF04172 LrgB-like family Y89_1013 PF09335 SNARE associated Golgi protein Y89_1014 PF02245 Methylpurine-DNA glycosylase (MPG) Y89_1017 PF00171 Aldehyde dehydrogenase family Y89_1018 PF01467 Cytidylyltransferase-like Y89_1020 PF02590 Predicted SPOUT methyltransferase Y89_1021 PF00905 Penicillin binding protein transpeptidase domain Y89_1021 PF03717 Penicillin-binding Protein dimerisation domain Y89_1022 PF01098 Cell cycle protein Y89_1023 PF13406 Transglycosylase SLT domain Y89_1024 PF05036 Sporulation related domain Y89_1024 PF03330 Lytic transglycolase Y89_1025 PF07943 Penicillin-binding protein 5, C-terminal domain Y89_1025 PF00768 D-alanyl-D-alanine carboxypeptidase Y89_1026 PF04359 Protein of unknown function (DUF493) Y89_1027 PF03099 Biotin/lipoate A/B protein ligase family Y89_1028 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Y89_1028 PF04055 Radical SAM superfamily Y89_1029 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1029 PF03466 LysR substrate binding domain Y89_1031 PF13406 Transglycosylase SLT domain Y89_1035 PF09334 tRNA synthetases class I (M) Y89_1035 PF13603 Leucyl-tRNA synthetase, Domain 2 Y89_1035 PF00133 tRNA synthetases class I (I, L, M and V) Y89_1035 PF08264 Anticodon-binding domain of tRNA Y89_1037 PF02698 DUF218 domain Y89_1038 PF00795 Carbon-nitrogen hydrolase Y89_1039 PF03471 Transporter associated domain Y89_1039 PF00571 CBS domain Y89_1040 PF02130 Uncharacterized protein family UPF0054 Y89_1041 PF02562 PhoH-like protein Y89_1042 PF00919 Uncharacterized protein family UPF0004 Y89_1042 PF01938 TRAM domain Y89_1042 PF04055 Radical SAM superfamily Y89_1045 PF00202 Aminotransferase class-III Y89_1046 PF02581 Thiamine monophosphate synthase Y89_1047 PF08543 Phosphomethylpyrimidine kinase Y89_1048 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1048 PF00512 His Kinase A (phospho-acceptor) domain Y89_1048 PF01627 Hpt domain Y89_1048 PF00072 Response regulator receiver domain Y89_1050 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_1050 PF18158 Adaptive response protein AidB N-terminal domain Y89_1050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_1052 PF01048 Phosphorylase superfamily Y89_1052 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus Y89_1053 PF02810 SEC-C motif Y89_1053 PF01043 SecA preprotein cross-linking domain Y89_1053 PF07516 SecA Wing and Scaffold domain Y89_1053 PF07517 SecA DEAD-like domain Y89_1054 PF12706 Beta-lactamase superfamily domain Y89_1055 PF00849 RNA pseudouridylate synthase Y89_1058 PF01037 Lrp/AsnC ligand binding domain Y89_1060 PF01545 Cation efflux family Y89_1060 PF16916 Dimerisation domain of Zinc Transporter Y89_1062 PF04408 Helicase associated domain (HA2) Y89_1062 PF00270 DEAD/DEAH box helicase Y89_1062 PF08482 ATP-dependent helicase C-terminal Y89_1062 PF00271 Helicase conserved C-terminal domain Y89_1066 PF00106 short chain dehydrogenase Y89_1069 PF00296 Luciferase-like monooxygenase Y89_1071 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) Y89_1073 PF00271 Helicase conserved C-terminal domain Y89_1073 PF00270 DEAD/DEAH box helicase Y89_1074 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_1074 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_1075 PF00196 Bacterial regulatory proteins, luxR family Y89_1075 PF00072 Response regulator receiver domain Y89_1076 PF00990 Diguanylate cyclase, GGDEF domain Y89_1076 PF13426 PAS domain Y89_1076 PF00563 EAL domain Y89_1077 PF00989 PAS fold Y89_1077 PF01627 Hpt domain Y89_1077 PF00072 Response regulator receiver domain Y89_1077 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_1077 PF00512 His Kinase A (phospho-acceptor) domain Y89_1077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1078 PF13302 Acetyltransferase (GNAT) domain Y89_1079 PF13302 Acetyltransferase (GNAT) domain Y89_1083 PF00216 Bacterial DNA-binding protein Y89_1085 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y89_1086 PF00005 ABC transporter Y89_1087 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1088 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y89_1089 PF03169 OPT oligopeptide transporter protein Y89_1090 PF02028 BCCT, betaine/carnitine/choline family transporter Y89_1092 PF03180 NLPA lipoprotein Y89_1093 PF01654 Cytochrome bd terminal oxidase subunit I Y89_1094 PF02322 Cytochrome bd terminal oxidase subunit II Y89_1096 PF02311 AraC-like ligand binding domain Y89_1096 PF12833 Helix-turn-helix domain Y89_1098 PF00108 Thiolase, N-terminal domain Y89_1098 PF02803 Thiolase, C-terminal domain Y89_1099 PF00501 AMP-binding enzyme Y89_1099 PF13193 AMP-binding enzyme C-terminal domain Y89_1101 PF07044 Protein of unknown function (DUF1329) Y89_1102 PF17874 MalT-like TPR region Y89_1102 PF00196 Bacterial regulatory proteins, luxR family Y89_1103 PF00403 Heavy-metal-associated domain Y89_1104 PF02562 PhoH-like protein Y89_1104 PF13638 PIN domain Y89_1105 PF01967 MoaC family Y89_1106 PF02597 ThiS family Y89_1107 PF02391 MoaE protein Y89_1108 PF00994 Probable molybdopterin binding domain Y89_1109 PF03453 MoeA N-terminal region (domain I and II) Y89_1109 PF03454 MoeA C-terminal region (domain IV) Y89_1109 PF00994 Probable molybdopterin binding domain Y89_1113 PF09423 PhoD-like phosphatase Y89_1113 PF16655 PhoD-like phosphatase, N-terminal domain Y89_1120 PF16658 Class II release factor RF3, C-terminal domain Y89_1120 PF03144 Elongation factor Tu domain 2 Y89_1120 PF00009 Elongation factor Tu GTP binding domain Y89_1122 PF07660 Secretin and TonB N terminus short domain Y89_1122 PF07715 TonB-dependent Receptor Plug Domain Y89_1122 PF00593 TonB dependent receptor Y89_1123 PF04773 FecR protein Y89_1123 PF16220 Domain of unknown function (DUF4880) Y89_1124 PF08281 Sigma-70, region 4 Y89_1124 PF04542 Sigma-70 region 2 Y89_1125 PF12833 Helix-turn-helix domain Y89_1125 PF01965 DJ-1/PfpI family Y89_1126 PF00892 EamA-like transporter family Y89_1127 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_1127 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_1128 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1128 PF03466 LysR substrate binding domain Y89_1129 PF02321 Outer membrane efflux protein Y89_1130 PF04632 Fusaric acid resistance protein family Y89_1132 PF00529 HlyD membrane-fusion protein of T1SS Y89_1132 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_1133 PF00571 CBS domain Y89_1133 PF00005 ABC transporter Y89_1134 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1135 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y89_1136 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1137 PF00999 Sodium/hydrogen exchanger family Y89_1143 PF00106 short chain dehydrogenase Y89_1144 PF08241 Methyltransferase domain Y89_1147 PF00196 Bacterial regulatory proteins, luxR family Y89_1147 PF00072 Response regulator receiver domain Y89_1148 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Y89_1148 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1148 PF00672 HAMP domain Y89_1148 PF07730 Histidine kinase Y89_1149 PF07690 Major Facilitator Superfamily Y89_1150 PF07690 Major Facilitator Superfamily Y89_1151 PF14710 Respiratory nitrate reductase alpha N-terminal Y89_1151 PF01568 Molydopterin dinucleotide binding domain Y89_1151 PF00384 Molybdopterin oxidoreductase Y89_1152 PF13247 4Fe-4S dicluster domain Y89_1152 PF14711 Respiratory nitrate reductase beta C-terminal Y89_1153 PF02613 Nitrate reductase delta subunit Y89_1154 PF02665 Nitrate reductase gamma subunit Y89_1156 PF06463 Molybdenum Cofactor Synthesis C Y89_1156 PF04055 Radical SAM superfamily Y89_1158 PF07715 TonB-dependent Receptor Plug Domain Y89_1158 PF00593 TonB dependent receptor Y89_1159 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_1160 PF13309 HTH domain Y89_1160 PF08348 YheO-like PAS domain Y89_1161 PF01266 FAD dependent oxidoreductase Y89_1162 PF02423 Ornithine cyclodeaminase/mu-crystallin family Y89_1163 PF00270 DEAD/DEAH box helicase Y89_1163 PF00271 Helicase conserved C-terminal domain Y89_1164 PF13193 AMP-binding enzyme C-terminal domain Y89_1164 PF00501 AMP-binding enzyme Y89_1165 PF02230 Phospholipase/Carboxylesterase Y89_1166 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_1167 PF01066 CDP-alcohol phosphatidyltransferase Y89_1170 PF01541 GIY-YIG catalytic domain Y89_1171 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_1175 PF04245 37-kD nucleoid-associated bacterial protein Y89_1179 PF03466 LysR substrate binding domain Y89_1179 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1183 PF03545 Yersinia virulence determinant (YopE) Y89_1183 PF03496 ADP-ribosyltransferase exoenzyme Y89_1184 PF05971 RNA methyltransferase Y89_1185 PF03600 Citrate transporter Y89_1185 PF02080 TrkA-C domain Y89_1186 PF00005 ABC transporter Y89_1187 PF02653 Branched-chain amino acid transport system / permease component Y89_1192 PF10458 Valyl tRNA synthetase tRNA binding arm Y89_1192 PF00133 tRNA synthetases class I (I, L, M and V) Y89_1192 PF08264 Anticodon-binding domain of tRNA Y89_1194 PF04364 DNA polymerase III chi subunit, HolC Y89_1195 PF00883 Cytosol aminopeptidase family, catalytic domain Y89_1195 PF02789 Cytosol aminopeptidase family, N-terminal domain Y89_1196 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y89_1196 PF12833 Helix-turn-helix domain Y89_1198 PF03739 Lipopolysaccharide export system permease LptF/LptG Y89_1199 PF03739 Lipopolysaccharide export system permease LptF/LptG Y89_1201 PF12792 CSS motif domain associated with EAL Y89_1201 PF00563 EAL domain Y89_1202 PF02547 Queuosine biosynthesis protein Y89_1203 PF01702 Queuine tRNA-ribosyltransferase Y89_1204 PF02699 Preprotein translocase subunit Y89_1205 PF02355 Protein export membrane protein Y89_1205 PF13721 SecD export protein N-terminal TM region Y89_1205 PF07549 SecD/SecF GG Motif Y89_1206 PF07549 SecD/SecF GG Motif Y89_1206 PF02355 Protein export membrane protein Y89_1207 PF05433 Glycine zipper 2TM domain Y89_1208 PF00459 Inositol monophosphatase family Y89_1209 PF00588 SpoU rRNA Methylase family Y89_1210 PF06426 Serine acetyltransferase, N-terminal Y89_1210 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_1211 PF02082 Transcriptional regulator Y89_1212 PF00266 Aminotransferase class-V Y89_1213 PF01592 NifU-like N terminal domain Y89_1214 PF01521 Iron-sulphur cluster biosynthesis Y89_1215 PF00226 DnaJ domain Y89_1215 PF07743 HSCB C-terminal oligomerisation domain Y89_1216 PF00012 Hsp70 protein Y89_1217 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_1218 PF04384 Iron-sulphur cluster assembly Y89_1219 PF00334 Nucleoside diphosphate kinase Y89_1220 PF04055 Radical SAM superfamily Y89_1222 PF13464 Domain of unknown function (DUF4115) Y89_1223 PF04551 GcpE protein Y89_1224 PF03129 Anticodon binding domain Y89_1224 PF13393 Histidyl-tRNA synthetase Y89_1226 PF13360 PQQ-like domain Y89_1227 PF01926 50S ribosome-binding GTPase Y89_1227 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Y89_1228 PF00155 Aminotransferase class I and II Y89_1229 PF00795 Carbon-nitrogen hydrolase Y89_1231 PF00248 Aldo/keto reductase family Y89_1234 PF00682 HMGL-like Y89_1234 PF08502 LeuA allosteric (dimerisation) domain Y89_1236 PF07715 TonB-dependent Receptor Plug Domain Y89_1236 PF00593 TonB dependent receptor Y89_1239 PF01551 Peptidase family M23 Y89_1239 PF01476 LysM domain Y89_1239 PF08525 Opacity-associated protein A N-terminal motif Y89_1241 PF04314 Copper chaperone PCu(A)C Y89_1243 PF00857 Isochorismatase family Y89_1244 PF01965 DJ-1/PfpI family Y89_1244 PF12833 Helix-turn-helix domain Y89_1246 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Y89_1248 PF03480 Bacterial extracellular solute-binding protein, family 7 Y89_1249 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1249 PF03466 LysR substrate binding domain Y89_1250 PF02601 Exonuclease VII, large subunit Y89_1250 PF13742 OB-fold nucleic acid binding domain Y89_1251 PF03466 LysR substrate binding domain Y89_1251 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1253 PF00850 Histone deacetylase domain Y89_1256 PF00072 Response regulator receiver domain Y89_1256 PF00196 Bacterial regulatory proteins, luxR family Y89_1257 PF00571 CBS domain Y89_1257 PF00478 IMP dehydrogenase / GMP reductase domain Y89_1258 PF00958 GMP synthase C terminal domain Y89_1258 PF00117 Glutamine amidotransferase class-I Y89_1258 PF02540 NAD synthase Y89_1259 PF00394 Multicopper oxidase Y89_1259 PF07731 Multicopper oxidase Y89_1259 PF07732 Multicopper oxidase Y89_1260 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Y89_1263 PF01464 Transglycosylase SLT domain Y89_1263 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_1264 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Y89_1264 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Y89_1264 PF02769 AIR synthase related protein, C-terminal domain Y89_1265 PF01784 NIF3 (NGG1p interacting factor 3) Y89_1266 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Y89_1266 PF00367 phosphotransferase system, EIIB Y89_1266 PF02378 Phosphotransferase system, EIIC Y89_1267 PF00391 PEP-utilising enzyme, mobile domain Y89_1267 PF02896 PEP-utilising enzyme, TIM barrel domain Y89_1267 PF00381 PTS HPr component phosphorylation site Y89_1267 PF05524 PEP-utilising enzyme, N-terminal Y89_1267 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y89_1268 PF01380 SIS domain Y89_1269 PF01979 Amidohydrolase family Y89_1270 PF00392 Bacterial regulatory proteins, gntR family Y89_1270 PF07702 UTRA domain Y89_1272 PF00293 NUDIX domain Y89_1272 PF09297 NADH pyrophosphatase zinc ribbon domain Y89_1273 PF00293 NUDIX domain Y89_1274 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_1276 PF02222 ATP-grasp domain Y89_1276 PF01370 NAD dependent epimerase/dehydratase family Y89_1278 PF07690 Major Facilitator Superfamily Y89_1278 PF00083 Sugar (and other) transporter Y89_1279 PF01595 Cyclin M transmembrane N-terminal domain Y89_1279 PF00571 CBS domain Y89_1279 PF03471 Transporter associated domain Y89_1281 PF00448 SRP54-type protein, GTPase domain Y89_1281 PF02978 Signal peptide binding domain Y89_1281 PF02881 SRP54-type protein, helical bundle domain Y89_1282 PF00886 Ribosomal protein S16 Y89_1283 PF01782 RimM N-terminal domain Y89_1283 PF05239 PRC-barrel domain Y89_1284 PF01746 tRNA (Guanine-1)-methyltransferase Y89_1285 PF01245 Ribosomal protein L19 Y89_1286 PF03061 Thioesterase superfamily Y89_1289 PF00589 Phage integrase family Y89_1289 PF02899 Phage integrase, N-terminal SAM-like domain Y89_1290 PF10411 Disulfide bond isomerase protein N-terminus Y89_1290 PF13098 Thioredoxin-like domain Y89_1292 PF00742 Homoserine dehydrogenase Y89_1292 PF01842 ACT domain Y89_1292 PF03447 Homoserine dehydrogenase, NAD binding domain Y89_1293 PF14821 Threonine synthase N terminus Y89_1293 PF00291 Pyridoxal-phosphate dependent enzyme Y89_1296 PF02515 CoA-transferase family III Y89_1301 PF17864 RuvB AAA lid domain Y89_1301 PF05491 RuvB C-terminal winged helix domain Y89_1301 PF05496 Holliday junction DNA helicase RuvB P-loop domain Y89_1303 PF07152 YaeQ protein Y89_1304 PF17768 RecJ OB domain Y89_1304 PF02272 DHHA1 domain Y89_1304 PF01368 DHH family Y89_1305 PF01447 Thermolysin metallopeptidase, catalytic domain Y89_1305 PF07504 Fungalysin/Thermolysin Propeptide Motif Y89_1305 PF02868 Thermolysin metallopeptidase, alpha-helical domain Y89_1305 PF03413 Peptidase propeptide and YPEB domain Y89_1312 PF00196 Bacterial regulatory proteins, luxR family Y89_1312 PF00072 Response regulator receiver domain Y89_1315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1315 PF03466 LysR substrate binding domain Y89_1316 PF00732 GMC oxidoreductase Y89_1316 PF05199 GMC oxidoreductase Y89_1317 PF07690 Major Facilitator Superfamily Y89_1317 PF00083 Sugar (and other) transporter Y89_1318 PF00672 HAMP domain Y89_1318 PF12729 Four helix bundle sensory module for signal transduction Y89_1318 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_1320 PF01739 CheR methyltransferase, SAM binding domain Y89_1322 PF01627 Hpt domain Y89_1322 PF00072 Response regulator receiver domain Y89_1322 PF01584 CheW-like domain Y89_1322 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1323 PF01339 CheB methylesterase Y89_1323 PF00072 Response regulator receiver domain Y89_1324 PF00990 Diguanylate cyclase, GGDEF domain Y89_1324 PF01590 GAF domain Y89_1324 PF00563 EAL domain Y89_1324 PF00360 Phytochrome region Y89_1325 PF03462 PCRF domain Y89_1325 PF00472 RF-1 domain Y89_1326 PF00152 tRNA synthetases class II (D, K and N) Y89_1326 PF01336 OB-fold nucleic acid binding domain Y89_1331 PF11647 Membrane Localization Domain Y89_1331 PF16671 Actin cross-linking domain Y89_1331 PF12146 Serine aminopeptidase, S33 Y89_1331 PF07634 RtxA repeat Y89_1331 PF11713 Peptidase C80 family Y89_1333 PF01661 Macro domain Y89_1334 PF00691 OmpA family Y89_1336 PF00403 Heavy-metal-associated domain Y89_1337 PF13411 MerR HTH family regulatory protein Y89_1339 PF00311 Phosphoenolpyruvate carboxylase Y89_1340 PF05191 Adenylate kinase, active site lid Y89_1341 PF00814 Glycoprotease family Y89_1343 PF01904 Protein of unknown function DUF72 Y89_1346 PF04445 Putative SAM-dependent methyltransferase Y89_1349 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_1350 PF00873 AcrB/AcrD/AcrF family Y89_1353 PF01553 Acyltransferase Y89_1354 PF00005 ABC transporter Y89_1358 PF02657 Fe-S metabolism associated domain Y89_1359 PF00266 Aminotransferase class-V Y89_1360 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle Y89_1360 PF14602 Hexapeptide repeat of succinyl-transferase Y89_1362 PF03960 ArsC family Y89_1366 PF00999 Sodium/hydrogen exchanger family Y89_1367 PF00155 Aminotransferase class I and II Y89_1368 PF01966 HD domain Y89_1368 PF08335 GlnD PII-uridylyltransferase Y89_1368 PF01842 ACT domain Y89_1368 PF01909 Nucleotidyltransferase domain Y89_1369 PF00557 Metallopeptidase family M24 Y89_1370 PF00318 Ribosomal protein S2 Y89_1371 PF00889 Elongation factor TS Y89_1372 PF00696 Amino acid kinase family Y89_1373 PF01765 Ribosome recycling factor Y89_1374 PF01255 Putative undecaprenyl diphosphate synthase Y89_1376 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Y89_1376 PF13288 DXP reductoisomerase C-terminal domain Y89_1376 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Y89_1377 PF02163 Peptidase family M50 Y89_1377 PF13180 PDZ domain Y89_1377 PF17820 PDZ domain Y89_1378 PF07244 Surface antigen variable number repeat Y89_1378 PF01103 Surface antigen Y89_1379 PF03938 Outer membrane protein (OmpH-like) Y89_1380 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Y89_1380 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_1381 PF07977 FabA-like domain Y89_1382 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_1382 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Y89_1383 PF02684 Lipid-A-disaccharide synthetase Y89_1384 PF01351 Ribonuclease HII Y89_1385 PF01235 Sodium:alanine symporter family Y89_1386 PF02811 PHP domain Y89_1386 PF01336 OB-fold nucleic acid binding domain Y89_1386 PF14579 Helix-hairpin-helix motif Y89_1386 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Y89_1386 PF07733 Bacterial DNA polymerase III alpha NTPase domain Y89_1387 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Y89_1388 PF01171 PP-loop family Y89_1388 PF11734 TilS substrate C-terminal domain Y89_1388 PF09179 TilS substrate binding domain Y89_1389 PF06418 CTP synthase N-terminus Y89_1389 PF00117 Glutamine amidotransferase class-I Y89_1390 PF00793 DAHP synthetase I family Y89_1391 PF00113 Enolase, C-terminal TIM barrel domain Y89_1391 PF03952 Enolase, N-terminal domain Y89_1392 PF04977 Septum formation initiator Y89_1393 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Y89_1395 PF04143 Sulphur transport Y89_1396 PF03466 LysR substrate binding domain Y89_1396 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1397 PF08240 Alcohol dehydrogenase GroES-like domain Y89_1397 PF00107 Zinc-binding dehydrogenase Y89_1398 PF00756 Putative esterase Y89_1399 PF02542 YgbB family Y89_1400 PF01142 tRNA pseudouridine synthase D (TruD) Y89_1401 PF01975 Survival protein SurE Y89_1403 PF01551 Peptidase family M23 Y89_1403 PF01476 LysM domain Y89_1404 PF04539 Sigma-70 region 3 Y89_1404 PF00140 Sigma-70 factor, region 1.2 Y89_1404 PF04545 Sigma-70, region 4 Y89_1404 PF04542 Sigma-70 region 2 Y89_1405 PF11953 Domain of unknown function (DUF3470) Y89_1405 PF00037 4Fe-4S binding domain Y89_1406 PF01624 MutS domain I Y89_1406 PF05190 MutS family domain IV Y89_1406 PF00488 MutS domain V Y89_1406 PF05188 MutS domain II Y89_1406 PF05192 MutS domain III Y89_1408 PF02464 Competence-damaged protein Y89_1409 PF00154 recA bacterial DNA recombination protein Y89_1410 PF02631 RecX family Y89_1412 PF10996 Beta-Casp domain Y89_1412 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Y89_1412 PF00753 Metallo-beta-lactamase superfamily Y89_1413 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Y89_1413 PF09363 XFP C-terminal domain Y89_1413 PF09364 XFP N-terminal domain Y89_1414 PF12843 Putative quorum-sensing-regulated virulence factor Y89_1416 PF13416 Bacterial extracellular solute-binding protein Y89_1417 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1418 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1419 PF08402 TOBE domain Y89_1419 PF00005 ABC transporter Y89_1422 PF00072 Response regulator receiver domain Y89_1422 PF00196 Bacterial regulatory proteins, luxR family Y89_1423 PF01219 Prokaryotic diacylglycerol kinase Y89_1424 PF01645 Conserved region in glutamate synthase Y89_1425 PF01197 Ribosomal protein L31 Y89_1426 PF00444 Ribosomal protein L36 Y89_1428 PF00795 Carbon-nitrogen hydrolase Y89_1429 PF00324 Amino acid permease Y89_1430 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y89_1430 PF02805 Metal binding domain of Ada Y89_1430 PF12833 Helix-turn-helix domain Y89_1430 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Y89_1431 PF00083 Sugar (and other) transporter Y89_1431 PF07690 Major Facilitator Superfamily Y89_1432 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1432 PF03466 LysR substrate binding domain Y89_1433 PF18158 Adaptive response protein AidB N-terminal domain Y89_1433 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_1433 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_1434 PF02515 CoA-transferase family III Y89_1435 PF00378 Enoyl-CoA hydratase/isomerase Y89_1436 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_1436 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_1436 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Y89_1437 PF02803 Thiolase, C-terminal domain Y89_1437 PF00108 Thiolase, N-terminal domain Y89_1438 PF03573 outer membrane porin, OprD family Y89_1439 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1439 PF03466 LysR substrate binding domain Y89_1440 PF00561 alpha/beta hydrolase fold Y89_1441 PF06942 GlpM protein Y89_1442 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Y89_1442 PF01266 FAD dependent oxidoreductase Y89_1443 PF08220 DeoR-like helix-turn-helix domain Y89_1443 PF00455 DeoR C terminal sensor domain Y89_1444 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y89_1444 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y89_1445 PF00230 Major intrinsic protein Y89_1446 PF04073 Aminoacyl-tRNA editing domain Y89_1447 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y89_1447 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y89_1448 PF02567 Phenazine biosynthesis-like protein Y89_1452 PF08361 MAATS-type transcriptional repressor, C-terminal region Y89_1452 PF00440 Bacterial regulatory proteins, tetR family Y89_1453 PF07690 Major Facilitator Superfamily Y89_1455 PF02311 AraC-like ligand binding domain Y89_1455 PF12833 Helix-turn-helix domain Y89_1456 PF00171 Aldehyde dehydrogenase family Y89_1457 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y89_1457 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y89_1458 PF13193 AMP-binding enzyme C-terminal domain Y89_1458 PF00501 AMP-binding enzyme Y89_1458 PF16177 Acetyl-coenzyme A synthetase N-terminus Y89_1459 PF08240 Alcohol dehydrogenase GroES-like domain Y89_1459 PF00107 Zinc-binding dehydrogenase Y89_1461 PF03466 LysR substrate binding domain Y89_1461 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1463 PF01026 TatD related DNase Y89_1464 PF00356 Bacterial regulatory proteins, lacI family Y89_1464 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y89_1465 PF00381 PTS HPr component phosphorylation site Y89_1465 PF05524 PEP-utilising enzyme, N-terminal Y89_1465 PF02896 PEP-utilising enzyme, TIM barrel domain Y89_1465 PF00391 PEP-utilising enzyme, mobile domain Y89_1465 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y89_1466 PF00294 pfkB family carbohydrate kinase Y89_1467 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Y89_1467 PF02378 Phosphotransferase system, EIIC Y89_1468 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y89_1468 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y89_1468 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y89_1469 PF00893 Small Multidrug Resistance protein Y89_1470 PF00892 EamA-like transporter family Y89_1471 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Y89_1472 PF01522 Polysaccharide deacetylase Y89_1473 PF00551 Formyl transferase Y89_1473 PF02911 Formyl transferase, C-terminal domain Y89_1473 PF01370 NAD dependent epimerase/dehydratase family Y89_1474 PF00535 Glycosyl transferase family 2 Y89_1475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Y89_1476 PF00483 Nucleotidyl transferase Y89_1476 PF01050 Mannose-6-phosphate isomerase Y89_1477 PF11182 Alginate O-acetyl transferase AlgF Y89_1478 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX Y89_1479 PF03062 MBOAT, membrane-bound O-acyltransferase family Y89_1480 PF05426 Alginate lyase Y89_1481 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX Y89_1481 PF16824 C-terminal carbohydrate-binding module Y89_1482 PF05048 Periplasmic copper-binding protein (NosD) Y89_1483 PF13372 Alginate export Y89_1485 PF07238 PilZ domain Y89_1487 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y89_1487 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y89_1487 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y89_1488 PF03883 Peroxide stress protein YaaA Y89_1489 PF08402 TOBE domain Y89_1489 PF00005 ABC transporter Y89_1490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Y89_1490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Y89_1492 PF03797 Autotransporter beta-domain Y89_1492 PF00082 Subtilase family Y89_1492 PF12951 Passenger-associated-transport-repeat Y89_1493 PF01568 Molydopterin dinucleotide binding domain Y89_1493 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y89_1493 PF00384 Molybdopterin oxidoreductase Y89_1494 PF00462 Glutaredoxin Y89_1495 PF07690 Major Facilitator Superfamily Y89_1496 PF00210 Ferritin-like domain Y89_1497 PF04324 BFD-like [2Fe-2S] binding domain Y89_1498 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y89_1498 PF00578 AhpC/TSA family Y89_1499 PF00929 Exonuclease Y89_1500 PF01979 Amidohydrolase family Y89_1502 PF00764 Arginosuccinate synthase Y89_1504 PF00529 HlyD membrane-fusion protein of T1SS Y89_1504 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_1505 PF00873 AcrB/AcrD/AcrF family Y89_1506 PF02321 Outer membrane efflux protein Y89_1510 PF00206 Lyase Y89_1510 PF10397 Adenylosuccinate lyase C-terminus Y89_1511 PF00206 Lyase Y89_1511 PF10397 Adenylosuccinate lyase C-terminus Y89_1514 PF10576 Iron-sulfur binding domain of endonuclease III Y89_1514 PF00633 Helix-hairpin-helix motif Y89_1514 PF00730 HhH-GPD superfamily base excision DNA repair protein Y89_1515 PF02508 Rnf-Nqr subunit, membrane protein Y89_1516 PF04205 FMN-binding domain Y89_1517 PF03116 NQR2, RnfD, RnfE family Y89_1518 PF13375 RnfC Barrel sandwich hybrid domain Y89_1518 PF10531 SLBB domain Y89_1518 PF12838 4Fe-4S dicluster domain Y89_1518 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Y89_1519 PF04060 Putative Fe-S cluster Y89_1520 PF02508 Rnf-Nqr subunit, membrane protein Y89_1524 PF09334 tRNA synthetases class I (M) Y89_1524 PF01588 Putative tRNA binding domain Y89_1525 PF10609 NUBPL iron-transfer P-loop NTPase Y89_1526 PF00692 dUTPase Y89_1527 PF00561 alpha/beta hydrolase fold Y89_1529 PF03472 Autoinducer binding domain Y89_1529 PF00196 Bacterial regulatory proteins, luxR family Y89_1530 PF00765 Autoinducer synthase Y89_1531 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_1532 PF00892 EamA-like transporter family Y89_1534 PF00877 NlpC/P60 family Y89_1535 PF00390 Malic enzyme, N-terminal domain Y89_1535 PF03949 Malic enzyme, NAD binding domain Y89_1537 PF01872 RibD C-terminal domain Y89_1538 PF00924 Mechanosensitive ion channel Y89_1539 PF07690 Major Facilitator Superfamily Y89_1540 PF00271 Helicase conserved C-terminal domain Y89_1540 PF00270 DEAD/DEAH box helicase Y89_1543 PF06794 Uncharacterised protein family (UPF0270) Y89_1544 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y89_1544 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1544 PF00672 HAMP domain Y89_1544 PF00072 Response regulator receiver domain Y89_1544 PF00512 His Kinase A (phospho-acceptor) domain Y89_1544 PF01627 Hpt domain Y89_1545 PF05343 M42 glutamyl aminopeptidase Y89_1547 PF00733 Asparagine synthase Y89_1547 PF13537 Glutamine amidotransferase domain Y89_1549 PF01925 Sulfite exporter TauE/SafE Y89_1550 PF01266 FAD dependent oxidoreductase Y89_1550 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Y89_1551 PF03976 Polyphosphate kinase 2 (PPK2) Y89_1552 PF00108 Thiolase, N-terminal domain Y89_1552 PF02803 Thiolase, C-terminal domain Y89_1553 PF04337 Protein of unknown function, DUF480 Y89_1554 PF06039 Malate:quinone oxidoreductase (Mqo) Y89_1556 PF00578 AhpC/TSA family Y89_1556 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y89_1557 PF09084 NMT1/THI5 like Y89_1558 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1559 PF00005 ABC transporter Y89_1560 PF03358 NADPH-dependent FMN reductase Y89_1561 PF09084 NMT1/THI5 like Y89_1562 PF00296 Luciferase-like monooxygenase Y89_1563 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1564 PF00005 ABC transporter Y89_1565 PF03459 TOBE domain Y89_1565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1568 PF02152 Dihydroneopterin aldolase Y89_1569 PF01227 GTP cyclohydrolase I Y89_1572 PF00258 Flavodoxin Y89_1573 PF01548 Transposase Y89_1573 PF02371 Transposase IS116/IS110/IS902 family Y89_1574 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1574 PF03466 LysR substrate binding domain Y89_1575 PF03788 LrgA family Y89_1576 PF04172 LrgB-like family Y89_1577 PF00596 Class II Aldolase and Adducin N-terminal domain Y89_1578 PF12697 Alpha/beta hydrolase family Y89_1580 PF00106 short chain dehydrogenase Y89_1581 PF00378 Enoyl-CoA hydratase/isomerase Y89_1586 PF07044 Protein of unknown function (DUF1329) Y89_1587 PF00196 Bacterial regulatory proteins, luxR family Y89_1588 PF13369 Transglutaminase-like superfamily Y89_1589 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Y89_1589 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y89_1590 PF00676 Dehydrogenase E1 component Y89_1591 PF02780 Transketolase, C-terminal domain Y89_1591 PF02779 Transketolase, pyrimidine binding domain Y89_1592 PF00364 Biotin-requiring enzyme Y89_1592 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Y89_1592 PF02817 e3 binding domain Y89_1600 PF07715 TonB-dependent Receptor Plug Domain Y89_1600 PF00593 TonB dependent receptor Y89_1601 PF06438 Heme-binding protein A (HasA) Y89_1602 PF00664 ABC transporter transmembrane region Y89_1602 PF00005 ABC transporter Y89_1603 PF00529 HlyD membrane-fusion protein of T1SS Y89_1604 PF02321 Outer membrane efflux protein Y89_1606 PF06146 Phosphate-starvation-inducible E Y89_1611 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1611 PF03466 LysR substrate binding domain Y89_1612 PF00175 Oxidoreductase NAD-binding domain Y89_1612 PF00970 Oxidoreductase FAD-binding domain Y89_1613 PF05573 NosL Y89_1614 PF12679 ABC-2 family transporter protein Y89_1615 PF00005 ABC transporter Y89_1616 PF05048 Periplasmic copper-binding protein (NosD) Y89_1617 PF18793 Nitrous oxide reductase propeller repeat 2 Y89_1617 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Y89_1617 PF18764 Nitrous oxide reductase propeller repeat Y89_1618 PF12801 4Fe-4S binding domain Y89_1618 PF04205 FMN-binding domain Y89_1621 PF01980 tRNA-methyltransferase O Y89_1621 PF18389 TrmO C-terminal domain Y89_1625 PF00005 ABC transporter Y89_1627 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1628 PF07702 UTRA domain Y89_1628 PF00392 Bacterial regulatory proteins, gntR family Y89_1629 PF06754 Phosphonate metabolism protein PhnG Y89_1631 PF05861 Bacterial phosphonate metabolism protein (PhnI) Y89_1632 PF06007 Phosphonate metabolism protein PhnJ Y89_1633 PF00005 ABC transporter Y89_1634 PF00005 ABC transporter Y89_1635 PF07969 Amidohydrolase family Y89_1637 PF12706 Beta-lactamase superfamily domain Y89_1643 PF00795 Carbon-nitrogen hydrolase Y89_1646 PF03861 ANTAR domain Y89_1647 PF02293 AmiS/UreI family transporter Y89_1651 PF00892 EamA-like transporter family Y89_1652 PF00291 Pyridoxal-phosphate dependent enzyme Y89_1653 PF00120 Glutamine synthetase, catalytic domain Y89_1654 PF07690 Major Facilitator Superfamily Y89_1656 PF07317 Flagellar regulator YcgR Y89_1656 PF07238 PilZ domain Y89_1660 PF01584 CheW-like domain Y89_1660 PF00072 Response regulator receiver domain Y89_1661 PF03705 CheR methyltransferase, all-alpha domain Y89_1661 PF01739 CheR methyltransferase, SAM binding domain Y89_1662 PF13466 STAS domain Y89_1663 PF00486 Transcriptional regulatory protein, C terminal Y89_1663 PF00072 Response regulator receiver domain Y89_1665 PF16124 RecQ zinc-binding Y89_1665 PF00270 DEAD/DEAH box helicase Y89_1665 PF00271 Helicase conserved C-terminal domain Y89_1665 PF09382 RQC domain Y89_1665 PF00570 HRDC domain Y89_1666 PF00990 Diguanylate cyclase, GGDEF domain Y89_1666 PF00360 Phytochrome region Y89_1666 PF00563 EAL domain Y89_1666 PF01590 GAF domain Y89_1670 PF01734 Patatin-like phospholipase Y89_1672 PF01370 NAD dependent epimerase/dehydratase family Y89_1673 PF07690 Major Facilitator Superfamily Y89_1676 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y89_1676 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y89_1677 PF12680 SnoaL-like domain Y89_1678 PF00067 Cytochrome P450 Y89_1679 PF00106 short chain dehydrogenase Y89_1681 PF01494 FAD binding domain Y89_1682 PF13193 AMP-binding enzyme C-terminal domain Y89_1682 PF00501 AMP-binding enzyme Y89_1682 PF00550 Phosphopantetheine attachment site Y89_1682 PF00975 Thioesterase domain Y89_1682 PF00668 Condensation domain Y89_1683 PF00574 Clp protease Y89_1685 PF00106 short chain dehydrogenase Y89_1685 PF00561 alpha/beta hydrolase fold Y89_1688 PF03466 LysR substrate binding domain Y89_1688 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1690 PF04185 Phosphoesterase family Y89_1690 PF05506 Domain of unknown function (DUF756) Y89_1693 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1694 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1695 PF00005 ABC transporter Y89_1697 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y89_1697 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y89_1698 PF00990 Diguanylate cyclase, GGDEF domain Y89_1698 PF00563 EAL domain Y89_1698 PF03707 Bacterial signalling protein N terminal repeat Y89_1699 PF00884 Sulfatase Y89_1699 PF08019 Phosphoethanolamine transferase EptA/EptB Y89_1700 PF00582 Universal stress protein family Y89_1701 PF00271 Helicase conserved C-terminal domain Y89_1701 PF18339 RapA N-terminal Tudor like domain 1 Y89_1701 PF12137 RNA polymerase recycling family C-terminal Y89_1701 PF00176 SNF2 family N-terminal domain Y89_1701 PF18337 RapA N-terminal Tudor like domain Y89_1708 PF13533 Biotin-lipoyl like Y89_1709 PF07690 Major Facilitator Superfamily Y89_1710 PF01575 MaoC like domain Y89_1711 PF12146 Serine aminopeptidase, S33 Y89_1712 PF00501 AMP-binding enzyme Y89_1712 PF13193 AMP-binding enzyme C-terminal domain Y89_1713 PF00501 AMP-binding enzyme Y89_1713 PF13193 AMP-binding enzyme C-terminal domain Y89_1715 PF04408 Helicase associated domain (HA2) Y89_1715 PF00271 Helicase conserved C-terminal domain Y89_1715 PF00270 DEAD/DEAH box helicase Y89_1715 PF11898 Domain of unknown function (DUF3418) Y89_1715 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Y89_1716 PF00245 Alkaline phosphatase Y89_1717 PF01230 HIT domain Y89_1718 PF16671 Actin cross-linking domain Y89_1718 PF04717 Type VI secretion system, phage-baseplate injector Y89_1724 PF12796 Ankyrin repeats (3 copies) Y89_1724 PF00023 Ankyrin repeat Y89_1725 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y89_1725 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y89_1726 PF04542 Sigma-70 region 2 Y89_1726 PF08281 Sigma-70, region 4 Y89_1729 PF05114 Protein of unknown function (DUF692) Y89_1732 PF07396 Phosphate-selective porin O and P Y89_1733 PF07396 Phosphate-selective porin O and P Y89_1735 PF00561 alpha/beta hydrolase fold Y89_1735 PF00106 short chain dehydrogenase Y89_1737 PF02694 Uncharacterised BCR, YnfA/UPF0060 family Y89_1740 PF00271 Helicase conserved C-terminal domain Y89_1740 PF08494 DEAD/H associated Y89_1740 PF00270 DEAD/DEAH box helicase Y89_1741 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1741 PF00512 His Kinase A (phospho-acceptor) domain Y89_1741 PF09456 RcsC Alpha-Beta-Loop (ABL) Y89_1741 PF00072 Response regulator receiver domain Y89_1743 PF12833 Helix-turn-helix domain Y89_1743 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y89_1744 PF00593 TonB dependent receptor Y89_1744 PF07660 Secretin and TonB N terminus short domain Y89_1744 PF07715 TonB-dependent Receptor Plug Domain Y89_1745 PF07690 Major Facilitator Superfamily Y89_1746 PF00313 'Cold-shock' DNA-binding domain Y89_1747 PF00893 Small Multidrug Resistance protein Y89_1748 PF01758 Sodium Bile acid symporter family Y89_1749 PF04381 Putative exonuclease, RdgC Y89_1750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y89_1750 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Y89_1756 PF17153 Periplasmic sensor domain, extracellular Y89_1756 PF00563 EAL domain Y89_1757 PF11818 C-terminal domain of tail specific protease (DUF3340) Y89_1757 PF03572 Peptidase family S41 Y89_1757 PF17804 Tail specific protease N-terminal domain Y89_1757 PF00595 PDZ domain Y89_1758 PF00698 Acyl transferase domain Y89_1758 PF08659 KR domain Y89_1758 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_1758 PF00550 Phosphopantetheine attachment site Y89_1758 PF08240 Alcohol dehydrogenase GroES-like domain Y89_1758 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_1758 PF14765 Polyketide synthase dehydratase Y89_1758 PF16197 Ketoacyl-synthetase C-terminal extension Y89_1759 PF18429 Domain of unknown function (DUF5609) Y89_1760 PF08402 TOBE domain Y89_1760 PF00005 ABC transporter Y89_1762 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1765 PF00392 Bacterial regulatory proteins, gntR family Y89_1765 PF07702 UTRA domain Y89_1766 PF13302 Acetyltransferase (GNAT) domain Y89_1767 PF02127 Aminopeptidase I zinc metalloprotease (M18) Y89_1768 PF00849 RNA pseudouridylate synthase Y89_1769 PF03776 Septum formation topological specificity factor MinE Y89_1770 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y89_1771 PF03775 Septum formation inhibitor MinC, C-terminal domain Y89_1771 PF05209 Septum formation inhibitor MinC, N-terminal domain Y89_1772 PF03279 Bacterial lipid A biosynthesis acyltransferase Y89_1774 PF02678 Pirin Y89_1774 PF05726 Pirin C-terminal cupin domain Y89_1775 PF04333 MlaA lipoprotein Y89_1778 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y89_1779 PF04341 Protein of unknown function, DUF485 Y89_1780 PF00474 Sodium:solute symporter family Y89_1784 PF02371 Transposase IS116/IS110/IS902 family Y89_1784 PF01548 Transposase Y89_1787 PF00664 ABC transporter transmembrane region Y89_1787 PF00005 ABC transporter Y89_1788 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Y89_1789 PF00561 alpha/beta hydrolase fold Y89_1792 PF02525 Flavodoxin-like fold Y89_1794 PF01588 Putative tRNA binding domain Y89_1795 PF12833 Helix-turn-helix domain Y89_1797 PF00534 Glycosyl transferases group 1 Y89_1797 PF13439 Glycosyltransferase Family 4 Y89_1798 PF00211 Adenylate and Guanylate cyclase catalytic domain Y89_1800 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y89_1800 PF12833 Helix-turn-helix domain Y89_1803 PF00005 ABC transporter Y89_1804 PF02405 Permease MlaE Y89_1805 PF02386 Cation transport protein Y89_1806 PF03692 Putative zinc- or iron-chelating domain Y89_1807 PF00881 Nitroreductase family Y89_1809 PF00672 HAMP domain Y89_1809 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1809 PF00512 His Kinase A (phospho-acceptor) domain Y89_1809 PF16750 Sensor domain of 2-component histidine kinase Y89_1811 PF00486 Transcriptional regulatory protein, C terminal Y89_1811 PF00072 Response regulator receiver domain Y89_1813 PF03795 YCII-related domain Y89_1814 PF04279 Intracellular septation protein A Y89_1815 PF02811 PHP domain Y89_1816 PF01300 Telomere recombination Y89_1817 PF02616 Segregation and condensation protein ScpA Y89_1818 PF04079 Segregation and condensation complex subunit ScpB Y89_1821 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y89_1821 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Y89_1822 PF00920 Dehydratase family Y89_1823 PF02685 Glucokinase Y89_1824 PF00072 Response regulator receiver domain Y89_1824 PF00486 Transcriptional regulatory protein, C terminal Y89_1825 PF00672 HAMP domain Y89_1825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1825 PF00512 His Kinase A (phospho-acceptor) domain Y89_1826 PF01547 Bacterial extracellular solute-binding protein Y89_1828 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1829 PF00005 ABC transporter Y89_1829 PF17912 MalK OB fold domain Y89_1830 PF04966 Carbohydrate-selective porin, OprB family Y89_1831 PF01263 Aldose 1-epimerase Y89_1832 PF01380 SIS domain Y89_1832 PF01418 Helix-turn-helix domain, rpiR family Y89_1833 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Y89_1833 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Y89_1834 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Y89_1835 PF01081 KDPG and KHG aldolase Y89_1837 PF01479 S4 domain Y89_1837 PF00849 RNA pseudouridylate synthase Y89_1839 PF00990 Diguanylate cyclase, GGDEF domain Y89_1840 PF03616 Sodium/glutamate symporter Y89_1841 PF00491 Arginase family Y89_1843 PF00106 short chain dehydrogenase Y89_1844 PF13419 Haloacid dehalogenase-like hydrolase Y89_1846 PF01979 Amidohydrolase family Y89_1847 PF01008 Initiation factor 2 subunit family Y89_1848 PF03989 DNA gyrase C-terminal domain, beta-propeller Y89_1848 PF00521 DNA gyrase/topoisomerase IV, subunit A Y89_1849 PF00266 Aminotransferase class-V Y89_1850 PF01817 Chorismate mutase type II Y89_1850 PF01842 ACT domain Y89_1850 PF00800 Prephenate dehydratase Y89_1851 PF00155 Aminotransferase class I and II Y89_1852 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Y89_1853 PF02224 Cytidylate kinase Y89_1854 PF00575 S1 RNA binding domain Y89_1855 PF00216 Bacterial DNA-binding protein Y89_1857 PF01370 NAD dependent epimerase/dehydratase family Y89_1858 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Y89_1859 PF02350 UDP-N-acetylglucosamine 2-epimerase Y89_1860 PF03102 NeuB family Y89_1860 PF08666 SAF domain Y89_1862 PF00483 Nucleotidyl transferase Y89_1864 PF02348 Cytidylyltransferase Y89_1870 PF00117 Glutamine amidotransferase class-I Y89_1871 PF00977 Histidine biosynthesis protein Y89_1873 PF01370 NAD dependent epimerase/dehydratase family Y89_1877 PF00953 Glycosyl transferase family 4 Y89_1878 PF02719 Polysaccharide biosynthesis protein Y89_1880 PF00155 Aminotransferase class I and II Y89_1881 PF12344 Ultra-violet resistance protein B Y89_1881 PF17757 UvrB interaction domain Y89_1881 PF02151 UvrB/uvrC motif Y89_1881 PF00271 Helicase conserved C-terminal domain Y89_1881 PF04851 Type III restriction enzyme, res subunit Y89_1882 PF07690 Major Facilitator Superfamily Y89_1883 PF13533 Biotin-lipoyl like Y89_1884 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1884 PF03466 LysR substrate binding domain Y89_1885 PF00749 tRNA synthetases class I (E and Q), catalytic domain Y89_1887 PF00561 alpha/beta hydrolase fold Y89_1888 PF01081 KDPG and KHG aldolase Y89_1890 PF01207 Dihydrouridine synthase (Dus) Y89_1892 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_1893 PF00011 Hsp20/alpha crystallin family Y89_1895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1895 PF03466 LysR substrate binding domain Y89_1896 PF01042 Endoribonuclease L-PSP Y89_1897 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1898 PF00330 Aconitase family (aconitate hydratase) Y89_1899 PF00694 Aconitase C-terminal domain Y89_1900 PF08241 Methyltransferase domain Y89_1901 PF00180 Isocitrate/isopropylmalate dehydrogenase Y89_1902 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y89_1902 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y89_1903 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y89_1903 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y89_1905 PF01416 tRNA pseudouridine synthase Y89_1906 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Y89_1907 PF17848 Acetyl-coA carboxylase zinc finger domain Y89_1907 PF01039 Carboxyl transferase domain Y89_1908 PF08245 Mur ligase middle domain Y89_1908 PF02875 Mur ligase family, glutamate ligase domain Y89_1909 PF05036 Sporulation related domain Y89_1910 PF02674 Colicin V production protein Y89_1911 PF00156 Phosphoribosyl transferase domain Y89_1912 PF01053 Cys/Met metabolism PLP-dependent enzyme Y89_1914 PF03958 Bacterial type II/III secretion system short domain Y89_1914 PF00263 Bacterial type II and III secretion system protein Y89_1915 PF11356 Type II secretion system protein C Y89_1916 PF00437 Type II/IV secretion system protein Y89_1917 PF00482 Type II secretion system (T2SS), protein F Y89_1918 PF07963 Prokaryotic N-terminal methylation motif Y89_1918 PF08334 Type II secretion system (T2SS), protein G Y89_1919 PF12019 Type II transport protein GspH Y89_1919 PF07963 Prokaryotic N-terminal methylation motif Y89_1920 PF02501 Type II secretion system (T2SS), protein I Y89_1920 PF07963 Prokaryotic N-terminal methylation motif Y89_1921 PF07963 Prokaryotic N-terminal methylation motif Y89_1921 PF11612 Type II secretion system (T2SS), protein J Y89_1922 PF03934 Type II secretion system (T2SS), protein K Y89_1923 PF12693 GspL periplasmic domain Y89_1923 PF05134 Type II secretion system (T2SS), protein L Y89_1924 PF04612 Type II secretion system (T2SS), protein M Y89_1925 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y89_1925 PF12833 Helix-turn-helix domain Y89_1927 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_1927 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_1931 PF01513 ATP-NAD kinase Y89_1932 PF00149 Calcineurin-like phosphoesterase Y89_1933 PF01694 Rhomboid family Y89_1933 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease Y89_1934 PF07023 Protein of unknown function (DUF1315) Y89_1936 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Y89_1936 PF01433 Peptidase family M1 domain Y89_1936 PF11940 Domain of unknown function (DUF3458) Ig-like fold Y89_1938 PF07044 Protein of unknown function (DUF1329) Y89_1941 PF00512 His Kinase A (phospho-acceptor) domain Y89_1941 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1942 PF00072 Response regulator receiver domain Y89_1942 PF00486 Transcriptional regulatory protein, C terminal Y89_1948 PF01882 Protein of unknown function DUF58 Y89_1949 PF07726 ATPase family associated with various cellular activities (AAA) Y89_1949 PF17863 AAA lid domain Y89_1951 PF05088 Bacterial NAD-glutamate dehydrogenase Y89_1953 PF00857 Isochorismatase family Y89_1955 PF03537 Glycoside-hydrolase family GH114 Y89_1960 PF13439 Glycosyltransferase Family 4 Y89_1960 PF00534 Glycosyl transferases group 1 Y89_1966 PF00561 alpha/beta hydrolase fold Y89_1969 PF01180 Dihydroorotate dehydrogenase Y89_1970 PF04957 Ribosome modulation factor Y89_1971 PF10672 S-adenosylmethionine-dependent methyltransferase Y89_1971 PF02926 THUMP domain Y89_1971 PF01170 Putative RNA methylase family UPF0020 Y89_1972 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Y89_1973 PF04320 Protein with unknown function (DUF469) Y89_1974 PF00196 Bacterial regulatory proteins, luxR family Y89_1974 PF00072 Response regulator receiver domain Y89_1975 PF00989 PAS fold Y89_1975 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_1975 PF00072 Response regulator receiver domain Y89_1975 PF01627 Hpt domain Y89_1975 PF00512 His Kinase A (phospho-acceptor) domain Y89_1975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1976 PF01966 HD domain Y89_1980 PF00909 Ammonium Transporter Family Y89_1981 PF03573 outer membrane porin, OprD family Y89_1982 PF16123 Hydroxyacylglutathione hydrolase C-terminus Y89_1982 PF00753 Metallo-beta-lactamase superfamily Y89_1984 PF02798 Glutathione S-transferase, N-terminal domain Y89_1985 PF00440 Bacterial regulatory proteins, tetR family Y89_1989 PF12804 MobA-like NTP transferase domain Y89_1990 PF00994 Probable molybdopterin binding domain Y89_1991 PF03453 MoeA N-terminal region (domain I and II) Y89_1991 PF03454 MoeA C-terminal region (domain IV) Y89_1991 PF00994 Probable molybdopterin binding domain Y89_1994 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Y89_1994 PF01266 FAD dependent oxidoreductase Y89_1995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y89_1995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y89_1996 PF00781 Diacylglycerol kinase catalytic domain Y89_1999 PF01464 Transglycosylase SLT domain Y89_1999 PF14718 Soluble lytic murein transglycosylase L domain Y89_2002 PF00582 Universal stress protein family Y89_2005 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_2005 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_2005 PF00378 Enoyl-CoA hydratase/isomerase Y89_2006 PF00108 Thiolase, N-terminal domain Y89_2006 PF02803 Thiolase, C-terminal domain Y89_2008 PF01131 DNA topoisomerase Y89_2008 PF08272 Topoisomerase I zinc-ribbon-like Y89_2008 PF01396 Topoisomerase DNA binding C4 zinc finger Y89_2008 PF01751 Toprim domain Y89_2011 PF03846 Cell division inhibitor SulA Y89_2012 PF00717 Peptidase S24-like Y89_2012 PF01726 LexA DNA binding domain Y89_2013 PF00440 Bacterial regulatory proteins, tetR family Y89_2014 PF00933 Glycosyl hydrolase family 3 N terminal domain Y89_2015 PF01048 Phosphorylase superfamily Y89_2017 PF03461 TRCF domain Y89_2017 PF02559 CarD-like/TRCF domain Y89_2017 PF00270 DEAD/DEAH box helicase Y89_2017 PF17757 UvrB interaction domain Y89_2017 PF00271 Helicase conserved C-terminal domain Y89_2018 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y89_2018 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Y89_2019 PF00324 Amino acid permease Y89_2020 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Y89_2020 PF11973 NQRA C-terminal domain Y89_2021 PF03116 NQR2, RnfD, RnfE family Y89_2022 PF04205 FMN-binding domain Y89_2023 PF02508 Rnf-Nqr subunit, membrane protein Y89_2024 PF02508 Rnf-Nqr subunit, membrane protein Y89_2025 PF00970 Oxidoreductase FAD-binding domain Y89_2025 PF00175 Oxidoreductase NAD-binding domain Y89_2025 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_2026 PF02424 ApbE family Y89_2028 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_2028 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y89_2029 PF03009 Glycerophosphoryl diester phosphodiesterase family Y89_2032 PF02687 FtsX-like permease family Y89_2032 PF12704 MacB-like periplasmic core domain Y89_2033 PF00005 ABC transporter Y89_2034 PF12704 MacB-like periplasmic core domain Y89_2034 PF02687 FtsX-like permease family Y89_2036 PF03772 Competence protein Y89_2036 PF00753 Metallo-beta-lactamase superfamily Y89_2036 PF13567 Domain of unknown function (DUF4131) Y89_2037 PF01618 MotA/TolQ/ExbB proton channel family Y89_2038 PF02472 Biopolymer transport protein ExbD/TolR Y89_2039 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Y89_2040 PF03966 Trm112p-like protein Y89_2041 PF02348 Cytidylyltransferase Y89_2042 PF01451 Low molecular weight phosphotyrosine protein phosphatase Y89_2043 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Y89_2043 PF01565 FAD binding domain Y89_2044 PF12111 Polyribonucleotide phosphorylase C terminal Y89_2044 PF10150 Ribonuclease E/G family Y89_2044 PF00575 S1 RNA binding domain Y89_2045 PF00849 RNA pseudouridylate synthase Y89_2045 PF01479 S4 domain Y89_2046 PF13419 Haloacid dehalogenase-like hydrolase Y89_2047 PF01343 Peptidase family S49 Y89_2047 PF06965 Na+/H+ antiporter 1 Y89_2048 PF02545 Maf-like protein Y89_2049 PF02620 Large ribosomal RNA subunit accumulation protein YceD Y89_2050 PF01783 Ribosomal L32p protein family Y89_2051 PF02504 Fatty acid synthesis protein Y89_2052 PF00698 Acyl transferase domain Y89_2054 PF00550 Phosphopantetheine attachment site Y89_2055 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_2055 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_2056 PF01063 Amino-transferase class IV Y89_2057 PF02618 YceG-like family Y89_2058 PF02223 Thymidylate kinase Y89_2059 PF09115 DNA polymerase III, delta subunit, C terminal Y89_2061 PF01026 TatD related DNase Y89_2062 PF00266 Aminotransferase class-V Y89_2063 PF00440 Bacterial regulatory proteins, tetR family Y89_2068 PF01012 Electron transfer flavoprotein domain Y89_2069 PF01012 Electron transfer flavoprotein domain Y89_2069 PF00766 Electron transfer flavoprotein FAD-binding domain Y89_2070 PF12241 Trans-2-enoyl-CoA reductase catalytic region Y89_2070 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Y89_2070 PF07055 Enoyl reductase FAD binding domain Y89_2071 PF00561 alpha/beta hydrolase fold Y89_2072 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_2073 PF11760 Cobalamin synthesis G N-terminal Y89_2073 PF11761 Cobalamin biosynthesis central region Y89_2073 PF01890 Cobalamin synthesis G C-terminus Y89_2076 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y89_2076 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y89_2077 PF02514 CobN/Magnesium Chelatase Y89_2078 PF00793 DAHP synthetase I family Y89_2081 PF00108 Thiolase, N-terminal domain Y89_2081 PF02803 Thiolase, C-terminal domain Y89_2082 PF04389 Peptidase family M28 Y89_2082 PF02225 PA domain Y89_2083 PF00860 Permease family Y89_2085 PF01292 Prokaryotic cytochrome b561 Y89_2088 PF00561 alpha/beta hydrolase fold Y89_2089 PF07690 Major Facilitator Superfamily Y89_2090 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_2091 PF00440 Bacterial regulatory proteins, tetR family Y89_2092 PF03466 LysR substrate binding domain Y89_2092 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2096 PF00005 ABC transporter Y89_2097 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2098 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2099 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_2100 PF01546 Peptidase family M20/M25/M40 Y89_2100 PF07687 Peptidase dimerisation domain Y89_2101 PF03466 LysR substrate binding domain Y89_2101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2102 PF00672 HAMP domain Y89_2102 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2107 PF00753 Metallo-beta-lactamase superfamily Y89_2108 PF01032 FecCD transport family Y89_2110 PF00005 ABC transporter Y89_2111 PF00593 TonB dependent receptor Y89_2111 PF07715 TonB-dependent Receptor Plug Domain Y89_2112 PF02659 Putative manganese efflux pump Y89_2113 PF02571 Precorrin-6x reductase CbiJ/CobK Y89_2114 PF01888 CbiD Y89_2115 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_2116 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y89_2116 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y89_2117 PF02570 Precorrin-8X methylmutase Y89_2118 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_2119 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_2122 PF05736 OprF membrane domain Y89_2122 PF00691 OmpA family Y89_2123 PF00196 Bacterial regulatory proteins, luxR family Y89_2123 PF00072 Response regulator receiver domain Y89_2125 PF00392 Bacterial regulatory proteins, gntR family Y89_2125 PF00155 Aminotransferase class I and II Y89_2126 PF04542 Sigma-70 region 2 Y89_2126 PF08281 Sigma-70, region 4 Y89_2129 PF00501 AMP-binding enzyme Y89_2129 PF13193 AMP-binding enzyme C-terminal domain Y89_2129 PF00668 Condensation domain Y89_2129 PF00550 Phosphopantetheine attachment site Y89_2129 PF00975 Thioesterase domain Y89_2131 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_2131 PF00364 Biotin-requiring enzyme Y89_2131 PF00289 Biotin carboxylase, N-terminal domain Y89_2131 PF02785 Biotin carboxylase C-terminal domain Y89_2132 PF00378 Enoyl-CoA hydratase/isomerase Y89_2133 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2133 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2133 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2134 PF01039 Carboxyl transferase domain Y89_2137 PF17932 Tetracyclin repressor-like, C-terminal domain Y89_2137 PF00440 Bacterial regulatory proteins, tetR family Y89_2140 PF00512 His Kinase A (phospho-acceptor) domain Y89_2140 PF08448 PAS fold Y89_2140 PF13188 PAS domain Y89_2140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2140 PF00072 Response regulator receiver domain Y89_2141 PF02954 Bacterial regulatory protein, Fis family Y89_2141 PF00072 Response regulator receiver domain Y89_2141 PF00158 Sigma-54 interaction domain Y89_2143 PF03466 LysR substrate binding domain Y89_2143 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2145 PF03466 LysR substrate binding domain Y89_2145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2146 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Y89_2147 PF07726 ATPase family associated with various cellular activities (AAA) Y89_2147 PF17863 AAA lid domain Y89_2149 PF13559 Domain of unknown function (DUF4129) Y89_2149 PF01841 Transglutaminase-like superfamily Y89_2149 PF11992 Domain of unknown function (DUF3488) Y89_2152 PF07694 5TMR of 5TMR-LYT Y89_2152 PF00990 Diguanylate cyclase, GGDEF domain Y89_2155 PF00672 HAMP domain Y89_2155 PF12729 Four helix bundle sensory module for signal transduction Y89_2155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2156 PF01026 TatD related DNase Y89_2157 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_2157 PF01464 Transglycosylase SLT domain Y89_2158 PF07681 DoxX Y89_2159 PF03280 Proteobacterial lipase chaperone protein Y89_2160 PF00561 alpha/beta hydrolase fold Y89_2161 PF02834 LigT like Phosphoesterase Y89_2163 PF01272 Transcription elongation factor, GreA/GreB, C-term Y89_2163 PF03449 Transcription elongation factor, N-terminal Y89_2165 PF00005 ABC transporter Y89_2166 PF13472 GDSL-like Lipase/Acylhydrolase family Y89_2168 PF17969 L,D-transpeptidase C-terminal domain Y89_2168 PF03734 L,D-transpeptidase catalytic domain Y89_2170 PF08207 Elongation factor P (EF-P) KOW-like domain Y89_2170 PF01132 Elongation factor P (EF-P) OB domain Y89_2170 PF09285 Elongation factor P, C-terminal Y89_2171 PF02566 OsmC-like protein Y89_2172 PF01047 MarR family Y89_2173 PF03466 LysR substrate binding domain Y89_2173 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2175 PF03466 LysR substrate binding domain Y89_2175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2177 PF06224 Winged helix DNA-binding domain Y89_2178 PF01474 Class-II DAHP synthetase family Y89_2180 PF00378 Enoyl-CoA hydratase/isomerase Y89_2181 PF00270 DEAD/DEAH box helicase Y89_2181 PF03880 DbpA RNA binding domain Y89_2181 PF00271 Helicase conserved C-terminal domain Y89_2182 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Y89_2183 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2183 PF03466 LysR substrate binding domain Y89_2184 PF02321 Outer membrane efflux protein Y89_2185 PF13533 Biotin-lipoyl like Y89_2186 PF07690 Major Facilitator Superfamily Y89_2187 PF03466 LysR substrate binding domain Y89_2187 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2188 PF00582 Universal stress protein family Y89_2189 PF05724 Thiopurine S-methyltransferase (TPMT) Y89_2190 PF18027 Cytosolic carboxypeptidase N-terminal domain Y89_2190 PF00246 Zinc carboxypeptidase Y89_2191 PF01435 Peptidase family M48 Y89_2193 PF00155 Aminotransferase class I and II Y89_2194 PF01641 SelR domain Y89_2195 PF00255 Glutathione peroxidase Y89_2196 PF01047 MarR family Y89_2197 PF00672 HAMP domain Y89_2197 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2197 PF00512 His Kinase A (phospho-acceptor) domain Y89_2197 PF01627 Hpt domain Y89_2197 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y89_2197 PF00072 Response regulator receiver domain Y89_2198 PF17864 RuvB AAA lid domain Y89_2198 PF05496 Holliday junction DNA helicase RuvB P-loop domain Y89_2198 PF05491 RuvB C-terminal winged helix domain Y89_2199 PF13185 GAF domain Y89_2200 PF02798 Glutathione S-transferase, N-terminal domain Y89_2200 PF00043 Glutathione S-transferase, C-terminal domain Y89_2214 PF09317 Domain of unknown function (DUF1974) Y89_2214 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2214 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2214 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2216 PF00043 Glutathione S-transferase, C-terminal domain Y89_2216 PF13417 Glutathione S-transferase, N-terminal domain Y89_2217 PF00005 ABC transporter Y89_2218 PF01061 ABC-2 type transporter Y89_2219 PF00672 HAMP domain Y89_2219 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2219 PF00512 His Kinase A (phospho-acceptor) domain Y89_2220 PF00486 Transcriptional regulatory protein, C terminal Y89_2220 PF00072 Response regulator receiver domain Y89_2223 PF14489 QueF-like protein Y89_2223 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Y89_2225 PF01966 HD domain Y89_2227 PF07702 UTRA domain Y89_2227 PF00392 Bacterial regulatory proteins, gntR family Y89_2229 PF04333 MlaA lipoprotein Y89_2231 PF00072 Response regulator receiver domain Y89_2233 PF00923 Transaldolase/Fructose-6-phosphate aldolase Y89_2234 PF01207 Dihydrouridine synthase (Dus) Y89_2242 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2242 PF12729 Four helix bundle sensory module for signal transduction Y89_2242 PF00672 HAMP domain Y89_2243 PF07687 Peptidase dimerisation domain Y89_2243 PF01546 Peptidase family M20/M25/M40 Y89_2245 PF13443 Cro/C1-type HTH DNA-binding domain Y89_2253 PF01226 Formate/nitrite transporter Y89_2254 PF01266 FAD dependent oxidoreductase Y89_2260 PF00563 EAL domain Y89_2260 PF00990 Diguanylate cyclase, GGDEF domain Y89_2260 PF03707 Bacterial signalling protein N terminal repeat Y89_2262 PF02567 Phenazine biosynthesis-like protein Y89_2263 PF00293 NUDIX domain Y89_2265 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_2265 PF00378 Enoyl-CoA hydratase/isomerase Y89_2265 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_2268 PF04261 Dyp-type peroxidase family Y89_2275 PF03573 outer membrane porin, OprD family Y89_2277 PF03466 LysR substrate binding domain Y89_2277 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2280 PF03974 Ecotin Y89_2285 PF09335 SNARE associated Golgi protein Y89_2287 PF03631 Virulence factor BrkB Y89_2291 PF04231 Endonuclease I Y89_2293 PF00557 Metallopeptidase family M24 Y89_2299 PF00561 alpha/beta hydrolase fold Y89_2300 PF02824 TGS domain Y89_2300 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y89_2300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Y89_2300 PF03129 Anticodon binding domain Y89_2301 PF05198 Translation initiation factor IF-3, N-terminal domain Y89_2301 PF00707 Translation initiation factor IF-3, C-terminal domain Y89_2302 PF01632 Ribosomal protein L35 Y89_2303 PF00453 Ribosomal protein L20 Y89_2304 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Y89_2304 PF01409 tRNA synthetases class II core domain (F) Y89_2305 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Y89_2305 PF03483 B3/4 domain Y89_2305 PF03484 tRNA synthetase B5 domain Y89_2305 PF01588 Putative tRNA binding domain Y89_2305 PF03147 Ferredoxin-fold anticodon binding domain Y89_2306 PF00216 Bacterial DNA-binding protein Y89_2311 PF04002 RadC-like JAB domain Y89_2314 PF06067 Domain of unknown function (DUF932) Y89_2315 PF02195 ParB-like nuclease domain Y89_2322 PF13614 AAA domain Y89_2325 PF10502 Signal peptidase, peptidase S26 Y89_2327 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2327 PF03466 LysR substrate binding domain Y89_2333 PF03466 LysR substrate binding domain Y89_2333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2335 PF02534 Type IV secretory system Conjugative DNA transfer Y89_2337 PF00437 Type II/IV secretion system protein Y89_2338 PF04956 TrbC/VIRB2 family Y89_2340 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Y89_2344 PF03524 Conjugal transfer protein Y89_2345 PF03743 Bacterial conjugation TrbI-like protein Y89_2358 PF13195 Protein of unknown function (DUF4011) Y89_2358 PF13087 AAA domain Y89_2358 PF13086 AAA domain Y89_2358 PF13195 Protein of unknown function (DUF4011) Y89_2358 PF13086 AAA domain Y89_2358 PF13087 AAA domain Y89_2369 PF13411 MerR HTH family regulatory protein Y89_2370 PF00561 alpha/beta hydrolase fold Y89_2371 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_2371 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_2372 PF11953 Domain of unknown function (DUF3470) Y89_2372 PF00037 4Fe-4S binding domain Y89_2373 PF01568 Molydopterin dinucleotide binding domain Y89_2373 PF00384 Molybdopterin oxidoreductase Y89_2373 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y89_2374 PF01638 HxlR-like helix-turn-helix Y89_2376 PF13416 Bacterial extracellular solute-binding protein Y89_2377 PF01810 LysE type translocator Y89_2378 PF00291 Pyridoxal-phosphate dependent enzyme Y89_2380 PF17871 AAA lid domain Y89_2380 PF02861 Clp amino terminal domain, pathogenicity island component Y89_2380 PF07724 AAA domain (Cdc48 subfamily) Y89_2380 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_2380 PF00004 ATPase family associated with various cellular activities (AAA) Y89_2383 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y89_2383 PF12833 Helix-turn-helix domain Y89_2387 PF03573 outer membrane porin, OprD family Y89_2388 PF07969 Amidohydrolase family Y89_2391 PF12833 Helix-turn-helix domain Y89_2392 PF07759 Protein of unknown function (DUF1615) Y89_2394 PF03061 Thioesterase superfamily Y89_2395 PF02082 Transcriptional regulator Y89_2396 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_2397 PF00756 Putative esterase Y89_2398 PF07715 TonB-dependent Receptor Plug Domain Y89_2398 PF00593 TonB dependent receptor Y89_2399 PF16750 Sensor domain of 2-component histidine kinase Y89_2399 PF00512 His Kinase A (phospho-acceptor) domain Y89_2399 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2399 PF00672 HAMP domain Y89_2400 PF00072 Response regulator receiver domain Y89_2400 PF00486 Transcriptional regulatory protein, C terminal Y89_2401 PF04717 Type VI secretion system, phage-baseplate injector Y89_2402 PF03527 RHS protein Y89_2402 PF14220 Domain of unknown function (DUF4329) Y89_2402 PF05593 RHS Repeat Y89_2404 PF00291 Pyridoxal-phosphate dependent enzyme Y89_2405 PF01738 Dienelactone hydrolase family Y89_2406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2406 PF03466 LysR substrate binding domain Y89_2407 PF08240 Alcohol dehydrogenase GroES-like domain Y89_2407 PF00107 Zinc-binding dehydrogenase Y89_2409 PF01061 ABC-2 type transporter Y89_2410 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Y89_2410 PF00437 Type II/IV secretion system protein Y89_2411 PF00482 Type II secretion system (T2SS), protein F Y89_2412 PF07963 Prokaryotic N-terminal methylation motif Y89_2412 PF08334 Type II secretion system (T2SS), protein G Y89_2413 PF07963 Prokaryotic N-terminal methylation motif Y89_2413 PF08334 Type II secretion system (T2SS), protein G Y89_2421 PF01242 6-pyruvoyl tetrahydropterin synthase Y89_2422 PF00158 Sigma-54 interaction domain Y89_2422 PF02954 Bacterial regulatory protein, Fis family Y89_2423 PF00970 Oxidoreductase FAD-binding domain Y89_2423 PF00042 Globin Y89_2423 PF00175 Oxidoreductase NAD-binding domain Y89_2426 PF17263 Family of unknown function (DUF5329) Y89_2431 PF00072 Response regulator receiver domain Y89_2431 PF00486 Transcriptional regulatory protein, C terminal Y89_2432 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2432 PF08918 PhoQ Sensor Y89_2434 PF00672 HAMP domain Y89_2434 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2435 PF13726 Na+-H+ antiporter family Y89_2435 PF03553 Na+/H+ antiporter family Y89_2436 PF17200 Single Cache domain 2 Y89_2436 PF00672 HAMP domain Y89_2436 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2437 PF01594 AI-2E family transporter Y89_2438 PF08241 Methyltransferase domain Y89_2439 PF00361 Proton-conducting membrane transporter Y89_2440 PF00361 Proton-conducting membrane transporter Y89_2441 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Y89_2441 PF00361 Proton-conducting membrane transporter Y89_2442 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Y89_2443 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Y89_2444 PF12838 4Fe-4S dicluster domain Y89_2445 PF00146 NADH dehydrogenase Y89_2446 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Y89_2446 PF00384 Molybdopterin oxidoreductase Y89_2446 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y89_2447 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Y89_2447 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Y89_2449 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Y89_2449 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Y89_2450 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Y89_2451 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Y89_2454 PF00463 Isocitrate lyase family Y89_2457 PF13673 Acetyltransferase (GNAT) domain Y89_2458 PF08007 Cupin superfamily protein Y89_2459 PF08328 Adenylosuccinate lyase C-terminal Y89_2459 PF00206 Lyase Y89_2461 PF04356 Protein of unknown function (DUF489) Y89_2463 PF00293 NUDIX domain Y89_2464 PF03971 Monomeric isocitrate dehydrogenase Y89_2465 PF00180 Isocitrate/isopropylmalate dehydrogenase Y89_2466 PF00313 'Cold-shock' DNA-binding domain Y89_2467 PF02617 ATP-dependent Clp protease adaptor protein ClpS Y89_2468 PF00004 ATPase family associated with various cellular activities (AAA) Y89_2468 PF07724 AAA domain (Cdc48 subfamily) Y89_2468 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_2468 PF17871 AAA lid domain Y89_2468 PF02861 Clp amino terminal domain, pathogenicity island component Y89_2469 PF01176 Translation initiation factor 1A / IF-1 Y89_2470 PF04377 Arginine-tRNA-protein transferase, C terminus Y89_2470 PF04376 Arginine-tRNA-protein transferase, N terminus Y89_2471 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Y89_2472 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_2473 PF01580 FtsK/SpoIIIE family Y89_2473 PF09397 Ftsk gamma domain Y89_2473 PF17854 FtsK alpha domain Y89_2473 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Y89_2474 PF03548 Outer membrane lipoprotein carrier protein LolA Y89_2475 PF12002 MgsA AAA+ ATPase C terminal Y89_2475 PF16193 AAA C-terminal domain Y89_2475 PF00004 ATPase family associated with various cellular activities (AAA) Y89_2476 PF02403 Seryl-tRNA synthetase N-terminal domain Y89_2476 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y89_2477 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_2477 PF14824 Sirohaem biosynthesis protein central Y89_2477 PF10414 Sirohaem synthase dimerisation region Y89_2478 PF13409 Glutathione S-transferase, N-terminal domain Y89_2479 PF00591 Glycosyl transferase family, a/b domain Y89_2479 PF02885 Glycosyl transferase family, helical bundle domain Y89_2480 PF04358 DsrC like protein Y89_2481 PF04077 DsrH like protein Y89_2482 PF02635 DsrE/DsrF-like family Y89_2483 PF02635 DsrE/DsrF-like family Y89_2484 PF01027 Inhibitor of apoptosis-promoting Bax1 Y89_2486 PF05995 Cysteine dioxygenase type I Y89_2487 PF03466 LysR substrate binding domain Y89_2487 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2488 PF00296 Luciferase-like monooxygenase Y89_2489 PF09084 NMT1/THI5 like Y89_2490 PF00296 Luciferase-like monooxygenase Y89_2491 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2491 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y89_2491 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2492 PF09084 NMT1/THI5 like Y89_2494 PF09084 NMT1/THI5 like Y89_2496 PF13416 Bacterial extracellular solute-binding protein Y89_2497 PF00072 Response regulator receiver domain Y89_2497 PF00196 Bacterial regulatory proteins, luxR family Y89_2498 PF07715 TonB-dependent Receptor Plug Domain Y89_2498 PF00593 TonB dependent receptor Y89_2500 PF12833 Helix-turn-helix domain Y89_2500 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y89_2501 PF01494 FAD binding domain Y89_2502 PF00196 Bacterial regulatory proteins, luxR family Y89_2502 PF00072 Response regulator receiver domain Y89_2503 PF02151 UvrB/uvrC motif Y89_2503 PF01541 GIY-YIG catalytic domain Y89_2503 PF08459 UvrC Helix-hairpin-helix N-terminal Y89_2504 PF01066 CDP-alcohol phosphatidyltransferase Y89_2505 PF13356 Arm DNA-binding domain Y89_2505 PF14659 Phage integrase, N-terminal SAM-like domain Y89_2505 PF00589 Phage integrase family Y89_2506 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Y89_2507 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Y89_2513 PF02569 Pantoate-beta-alanine ligase Y89_2515 PF00108 Thiolase, N-terminal domain Y89_2515 PF02803 Thiolase, C-terminal domain Y89_2516 PF01144 Coenzyme A transferase Y89_2517 PF01144 Coenzyme A transferase Y89_2518 PF00682 HMGL-like Y89_2519 PF02785 Biotin carboxylase C-terminal domain Y89_2519 PF00289 Biotin carboxylase, N-terminal domain Y89_2519 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_2519 PF00364 Biotin-requiring enzyme Y89_2520 PF00378 Enoyl-CoA hydratase/isomerase Y89_2521 PF01039 Carboxyl transferase domain Y89_2522 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2522 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2522 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2523 PF13411 MerR HTH family regulatory protein Y89_2526 PF07044 Protein of unknown function (DUF1329) Y89_2532 PF00107 Zinc-binding dehydrogenase Y89_2532 PF08240 Alcohol dehydrogenase GroES-like domain Y89_2534 PF00067 Cytochrome P450 Y89_2536 PF05199 GMC oxidoreductase Y89_2536 PF00732 GMC oxidoreductase Y89_2537 PF00171 Aldehyde dehydrogenase family Y89_2539 PF07044 Protein of unknown function (DUF1329) Y89_2542 PF03466 LysR substrate binding domain Y89_2542 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2543 PF00255 Glutathione peroxidase Y89_2544 PF00106 short chain dehydrogenase Y89_2546 PF07044 Protein of unknown function (DUF1329) Y89_2547 PF14870 Photosynthesis system II assembly factor YCF48 Y89_2550 PF00378 Enoyl-CoA hydratase/isomerase Y89_2552 PF07690 Major Facilitator Superfamily Y89_2553 PF01134 Glucose inhibited division protein A Y89_2553 PF13932 GidA associated domain Y89_2554 PF00440 Bacterial regulatory proteins, tetR family Y89_2554 PF17938 Tetracyclin repressor-like, C-terminal domain Y89_2555 PF00067 Cytochrome P450 Y89_2564 PF00866 Ring hydroxylating beta subunit Y89_2566 PF07690 Major Facilitator Superfamily Y89_2567 PF14759 Reductase C-terminal Y89_2567 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_2568 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_2570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2570 PF12729 Four helix bundle sensory module for signal transduction Y89_2570 PF00672 HAMP domain Y89_2574 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_2575 PF05977 Transmembrane secretion effector Y89_2580 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_2581 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y89_2581 PF00355 Rieske [2Fe-2S] domain Y89_2582 PF00866 Ring hydroxylating beta subunit Y89_2585 PF00501 AMP-binding enzyme Y89_2585 PF13193 AMP-binding enzyme C-terminal domain Y89_2588 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_2589 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_2589 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_2590 PF02803 Thiolase, C-terminal domain Y89_2590 PF00108 Thiolase, N-terminal domain Y89_2592 PF00067 Cytochrome P450 Y89_2594 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2594 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2594 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2596 PF00378 Enoyl-CoA hydratase/isomerase Y89_2597 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2597 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2597 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2601 PF00106 short chain dehydrogenase Y89_2604 PF00512 His Kinase A (phospho-acceptor) domain Y89_2604 PF00072 Response regulator receiver domain Y89_2604 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_2604 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2604 PF01627 Hpt domain Y89_2607 PF02525 Flavodoxin-like fold Y89_2608 PF03301 Tryptophan 2,3-dioxygenase Y89_2609 PF00583 Acetyltransferase (GNAT) family Y89_2610 PF01037 Lrp/AsnC ligand binding domain Y89_2613 PF00487 Fatty acid desaturase Y89_2614 PF12729 Four helix bundle sensory module for signal transduction Y89_2614 PF00672 HAMP domain Y89_2614 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2615 PF00072 Response regulator receiver domain Y89_2616 PF00512 His Kinase A (phospho-acceptor) domain Y89_2616 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2617 PF07828 PA-IL-like protein Y89_2620 PF00360 Phytochrome region Y89_2620 PF00990 Diguanylate cyclase, GGDEF domain Y89_2620 PF00563 EAL domain Y89_2620 PF01590 GAF domain Y89_2624 PF13649 Methyltransferase domain Y89_2625 PF00916 Sulfate permease family Y89_2625 PF01740 STAS domain Y89_2627 PF00672 HAMP domain Y89_2627 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2632 PF02308 MgtC family Y89_2633 PF00501 AMP-binding enzyme Y89_2633 PF13193 AMP-binding enzyme C-terminal domain Y89_2634 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y89_2634 PF12833 Helix-turn-helix domain Y89_2635 PF13193 AMP-binding enzyme C-terminal domain Y89_2635 PF00501 AMP-binding enzyme Y89_2636 PF00106 short chain dehydrogenase Y89_2637 PF02803 Thiolase, C-terminal domain Y89_2637 PF00108 Thiolase, N-terminal domain Y89_2638 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2638 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2638 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2639 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2639 PF03466 LysR substrate binding domain Y89_2640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2640 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2642 PF03741 Integral membrane protein TerC family Y89_2644 PF03466 LysR substrate binding domain Y89_2644 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2645 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_2646 PF03372 Endonuclease/Exonuclease/phosphatase family Y89_2648 PF01103 Surface antigen Y89_2648 PF07244 Surface antigen variable number repeat Y89_2648 PF17243 POTRA domain TamA domain 1 Y89_2649 PF04357 TamB, inner membrane protein subunit of TAM complex Y89_2650 PF01066 CDP-alcohol phosphatidyltransferase Y89_2651 PF12147 Putative methyltransferase Y89_2651 PF12146 Serine aminopeptidase, S33 Y89_2652 PF00782 Dual specificity phosphatase, catalytic domain Y89_2656 PF00248 Aldo/keto reductase family Y89_2657 PF03466 LysR substrate binding domain Y89_2657 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2658 PF01235 Sodium:alanine symporter family Y89_2659 PF08534 Redoxin Y89_2660 PF00155 Aminotransferase class I and II Y89_2663 PF13533 Biotin-lipoyl like Y89_2664 PF00873 AcrB/AcrD/AcrF family Y89_2665 PF00873 AcrB/AcrD/AcrF family Y89_2666 PF02321 Outer membrane efflux protein Y89_2668 PF00512 His Kinase A (phospho-acceptor) domain Y89_2668 PF00672 HAMP domain Y89_2668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2669 PF00486 Transcriptional regulatory protein, C terminal Y89_2669 PF00072 Response regulator receiver domain Y89_2670 PF02321 Outer membrane efflux protein Y89_2671 PF00529 HlyD membrane-fusion protein of T1SS Y89_2671 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_2672 PF00873 AcrB/AcrD/AcrF family Y89_2673 PF14525 AraC-binding-like domain Y89_2673 PF12833 Helix-turn-helix domain Y89_2674 PF00355 Rieske [2Fe-2S] domain Y89_2674 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y89_2675 PF00866 Ring hydroxylating beta subunit Y89_2676 PF00175 Oxidoreductase NAD-binding domain Y89_2676 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_2676 PF00970 Oxidoreductase FAD-binding domain Y89_2677 PF00106 short chain dehydrogenase Y89_2678 PF00175 Oxidoreductase NAD-binding domain Y89_2678 PF00970 Oxidoreductase FAD-binding domain Y89_2678 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_2679 PF00866 Ring hydroxylating beta subunit Y89_2680 PF00355 Rieske [2Fe-2S] domain Y89_2680 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y89_2681 PF14525 AraC-binding-like domain Y89_2681 PF12833 Helix-turn-helix domain Y89_2682 PF03466 LysR substrate binding domain Y89_2682 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2683 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Y89_2683 PF13378 Enolase C-terminal domain-like Y89_2684 PF02426 Muconolactone delta-isomerase Y89_2685 PF00775 Dioxygenase Y89_2685 PF04444 Catechol dioxygenase N terminus Y89_2687 PF03573 outer membrane porin, OprD family Y89_2692 PF07690 Major Facilitator Superfamily Y89_2693 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Y89_2695 PF03466 LysR substrate binding domain Y89_2695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2696 PF05163 DinB family Y89_2697 PF02321 Outer membrane efflux protein Y89_2698 PF00873 AcrB/AcrD/AcrF family Y89_2699 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_2700 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system Y89_2709 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2709 PF03466 LysR substrate binding domain Y89_2710 PF14765 Polyketide synthase dehydratase Y89_2710 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_2710 PF08659 KR domain Y89_2710 PF08240 Alcohol dehydrogenase GroES-like domain Y89_2710 PF00698 Acyl transferase domain Y89_2710 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_2710 PF00107 Zinc-binding dehydrogenase Y89_2710 PF00550 Phosphopantetheine attachment site Y89_2710 PF16197 Ketoacyl-synthetase C-terminal extension Y89_2712 PF12833 Helix-turn-helix domain Y89_2718 PF00296 Luciferase-like monooxygenase Y89_2719 PF00034 Cytochrome c Y89_2720 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_2721 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2721 PF08521 Two-component sensor kinase N-terminal Y89_2721 PF00512 His Kinase A (phospho-acceptor) domain Y89_2722 PF00486 Transcriptional regulatory protein, C terminal Y89_2722 PF00072 Response regulator receiver domain Y89_2723 PF11412 Disulphide bond corrector protein DsbC Y89_2723 PF02683 Cytochrome C biogenesis protein transmembrane region Y89_2724 PF00578 AhpC/TSA family Y89_2725 PF13098 Thioredoxin-like domain Y89_2726 PF00067 Cytochrome P450 Y89_2728 PF02798 Glutathione S-transferase, N-terminal domain Y89_2728 PF14497 Glutathione S-transferase, C-terminal domain Y89_2729 PF07690 Major Facilitator Superfamily Y89_2731 PF07883 Cupin domain Y89_2732 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2732 PF03466 LysR substrate binding domain Y89_2733 PF08281 Sigma-70, region 4 Y89_2733 PF04542 Sigma-70 region 2 Y89_2734 PF16220 Domain of unknown function (DUF4880) Y89_2734 PF04773 FecR protein Y89_2735 PF00593 TonB dependent receptor Y89_2735 PF07715 TonB-dependent Receptor Plug Domain Y89_2738 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y89_2738 PF17287 POTRA domain Y89_2738 PF08479 POTRA domain, ShlB-type Y89_2739 PF15526 Novel toxin 21 Y89_2739 PF04829 Pre-toxin domain with VENN motif Y89_2739 PF13332 Hemagglutinin repeat Y89_2739 PF05594 Haemagluttinin repeat Y89_2739 PF05860 haemagglutination activity domain Y89_2745 PF08241 Methyltransferase domain Y89_2747 PF00756 Putative esterase Y89_2747 PF11806 Domain of unknown function (DUF3327) Y89_2749 PF18024 Helix-turn-helix domain Y89_2749 PF00158 Sigma-54 interaction domain Y89_2750 PF07969 Amidohydrolase family Y89_2751 PF03466 LysR substrate binding domain Y89_2751 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2752 PF01597 Glycine cleavage H-protein Y89_2753 PF02347 Glycine cleavage system P-protein Y89_2754 PF00464 Serine hydroxymethyltransferase Y89_2755 PF03313 Serine dehydratase alpha chain Y89_2755 PF03315 Serine dehydratase beta chain Y89_2756 PF08669 Glycine cleavage T-protein C-terminal barrel domain Y89_2756 PF01571 Aminomethyltransferase folate-binding domain Y89_2763 PF00403 Heavy-metal-associated domain Y89_2766 PF03466 LysR substrate binding domain Y89_2766 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2767 PF04632 Fusaric acid resistance protein family Y89_2769 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_2769 PF00529 HlyD membrane-fusion protein of T1SS Y89_2771 PF03976 Polyphosphate kinase 2 (PPK2) Y89_2774 PF00975 Thioesterase domain Y89_2775 PF00550 Phosphopantetheine attachment site Y89_2775 PF00668 Condensation domain Y89_2775 PF00501 AMP-binding enzyme Y89_2775 PF13193 AMP-binding enzyme C-terminal domain Y89_2779 PF03573 outer membrane porin, OprD family Y89_2780 PF00857 Isochorismatase family Y89_2781 PF00857 Isochorismatase family Y89_2782 PF05726 Pirin C-terminal cupin domain Y89_2782 PF02678 Pirin Y89_2783 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2783 PF03466 LysR substrate binding domain Y89_2784 PF01204 Trehalase Y89_2786 PF07995 Glucose / Sorbosone dehydrogenase Y89_2787 PF00202 Aminotransferase class-III Y89_2788 PF03621 MbtH-like protein Y89_2789 PF00975 Thioesterase domain Y89_2791 PF00950 ABC 3 transport family Y89_2792 PF00005 ABC transporter Y89_2799 PF00550 Phosphopantetheine attachment site Y89_2799 PF00501 AMP-binding enzyme Y89_2799 PF00668 Condensation domain Y89_2799 PF13193 AMP-binding enzyme C-terminal domain Y89_2800 PF00668 Condensation domain Y89_2800 PF00501 AMP-binding enzyme Y89_2800 PF00550 Phosphopantetheine attachment site Y89_2800 PF13193 AMP-binding enzyme C-terminal domain Y89_2801 PF00593 TonB dependent receptor Y89_2801 PF07715 TonB-dependent Receptor Plug Domain Y89_2801 PF07660 Secretin and TonB N terminus short domain Y89_2802 PF00664 ABC transporter transmembrane region Y89_2802 PF00005 ABC transporter Y89_2808 PF02321 Outer membrane efflux protein Y89_2809 PF00005 ABC transporter Y89_2809 PF02687 FtsX-like permease family Y89_2809 PF12704 MacB-like periplasmic core domain Y89_2810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_2813 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) Y89_2814 PF01804 Penicillin amidase Y89_2815 PF01475 Ferric uptake regulator family Y89_2816 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2816 PF03466 LysR substrate binding domain Y89_2817 PF01070 FMN-dependent dehydrogenase Y89_2820 PF01799 [2Fe-2S] binding domain Y89_2820 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_2821 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y89_2823 PF00072 Response regulator receiver domain Y89_2823 PF00196 Bacterial regulatory proteins, luxR family Y89_2826 PF04717 Type VI secretion system, phage-baseplate injector Y89_2829 PF07724 AAA domain (Cdc48 subfamily) Y89_2829 PF00004 ATPase family associated with various cellular activities (AAA) Y89_2829 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_2829 PF17871 AAA lid domain Y89_2843 PF03358 NADPH-dependent FMN reductase Y89_2844 PF00296 Luciferase-like monooxygenase Y89_2845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2845 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y89_2846 PF00158 Sigma-54 interaction domain Y89_2847 PF03969 AFG1-like ATPase Y89_2848 PF03009 Glycerophosphoryl diester phosphodiesterase family Y89_2849 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2850 PF09383 NIL domain Y89_2850 PF00005 ABC transporter Y89_2851 PF03180 NLPA lipoprotein Y89_2852 PF00296 Luciferase-like monooxygenase Y89_2853 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y89_2853 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2854 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y89_2854 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2854 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2878 PF14718 Soluble lytic murein transglycosylase L domain Y89_2878 PF01464 Transglycosylase SLT domain Y89_2884 PF03237 Terminase-like family Y89_2886 PF04233 Phage Mu protein F like protein Y89_2910 PF00294 pfkB family carbohydrate kinase Y89_2911 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y89_2911 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y89_2912 PF01232 Mannitol dehydrogenase Rossmann domain Y89_2912 PF08125 Mannitol dehydrogenase C-terminal domain Y89_2913 PF00005 ABC transporter Y89_2913 PF08402 TOBE domain Y89_2914 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2915 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2919 PF00593 TonB dependent receptor Y89_2919 PF07715 TonB-dependent Receptor Plug Domain Y89_2920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2920 PF03466 LysR substrate binding domain Y89_2922 PF12833 Helix-turn-helix domain Y89_2922 PF02311 AraC-like ligand binding domain Y89_2925 PF00005 ABC transporter Y89_2927 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2928 PF00296 Luciferase-like monooxygenase Y89_2929 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2929 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y89_2931 PF00171 Aldehyde dehydrogenase family Y89_2933 PF02447 GntP family permease Y89_2935 PF00356 Bacterial regulatory proteins, lacI family Y89_2935 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y89_2937 PF01266 FAD dependent oxidoreductase Y89_2938 PF03466 LysR substrate binding domain Y89_2938 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2939 PF00144 Beta-lactamase Y89_2942 PF07883 Cupin domain Y89_2942 PF01381 Helix-turn-helix Y89_2944 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y89_2946 PF00005 ABC transporter Y89_2947 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2948 PF01810 LysE type translocator Y89_2949 PF00501 AMP-binding enzyme Y89_2949 PF13193 AMP-binding enzyme C-terminal domain Y89_2949 PF00668 Condensation domain Y89_2949 PF00550 Phosphopantetheine attachment site Y89_2952 PF00668 Condensation domain Y89_2952 PF13193 AMP-binding enzyme C-terminal domain Y89_2952 PF00550 Phosphopantetheine attachment site Y89_2952 PF00501 AMP-binding enzyme Y89_2952 PF13193 AMP-binding enzyme C-terminal domain Y89_2952 PF00550 Phosphopantetheine attachment site Y89_2952 PF00501 AMP-binding enzyme Y89_2952 PF00668 Condensation domain Y89_2954 PF00704 Glycosyl hydrolases family 18 Y89_2956 PF02910 Fumarate reductase flavoprotein C-term Y89_2956 PF00890 FAD binding domain Y89_2959 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2960 PF00005 ABC transporter Y89_2963 PF04966 Carbohydrate-selective porin, OprB family Y89_2964 PF01011 PQQ enzyme repeat Y89_2965 PF00593 TonB dependent receptor Y89_2965 PF07715 TonB-dependent Receptor Plug Domain Y89_2968 PF01435 Peptidase family M48 Y89_2974 PF03358 NADPH-dependent FMN reductase Y89_2975 PF01451 Low molecular weight phosphotyrosine protein phosphatase Y89_2976 PF02040 Arsenical pump membrane protein Y89_2977 PF01022 Bacterial regulatory protein, arsR family Y89_2978 PF06719 AraC-type transcriptional regulator N-terminus Y89_2978 PF12833 Helix-turn-helix domain Y89_2979 PF08240 Alcohol dehydrogenase GroES-like domain Y89_2979 PF00107 Zinc-binding dehydrogenase Y89_2981 PF00376 MerR family regulatory protein Y89_2981 PF09278 MerR, DNA binding Y89_2982 PF00905 Penicillin binding protein transpeptidase domain Y89_2982 PF03717 Penicillin-binding Protein dimerisation domain Y89_2983 PF00583 Acetyltransferase (GNAT) family Y89_2984 PF00440 Bacterial regulatory proteins, tetR family Y89_2986 PF03992 Antibiotic biosynthesis monooxygenase Y89_2988 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_2988 PF00034 Cytochrome c Y89_2989 PF05199 GMC oxidoreductase Y89_2989 PF00732 GMC oxidoreductase Y89_2990 PF13618 Gluconate 2-dehydrogenase subunit 3 Y89_2991 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_2991 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_2993 PF00294 pfkB family carbohydrate kinase Y89_2995 PF00356 Bacterial regulatory proteins, lacI family Y89_2996 PF03466 LysR substrate binding domain Y89_2996 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2998 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal Y89_2998 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal Y89_3001 PF17763 Glutaminase/Asparaginase C-terminal domain Y89_3001 PF00710 Asparaginase, N-terminal Y89_3002 PF01235 Sodium:alanine symporter family Y89_3004 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y89_3004 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_3005 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Y89_3005 PF00364 Biotin-requiring enzyme Y89_3005 PF02817 e3 binding domain Y89_3006 PF02779 Transketolase, pyrimidine binding domain Y89_3006 PF02780 Transketolase, C-terminal domain Y89_3007 PF00676 Dehydrogenase E1 component Y89_3007 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal Y89_3009 PF01037 Lrp/AsnC ligand binding domain Y89_3014 PF03023 Lipid II flippase MurJ Y89_3021 PF18412 Outer-membrane lipoprotein Wza C-terminal domain Y89_3021 PF10531 SLBB domain Y89_3021 PF02563 Polysaccharide biosynthesis/export protein Y89_3022 PF00535 Glycosyl transferase family 2 Y89_3023 PF00483 Nucleotidyl transferase Y89_3023 PF01050 Mannose-6-phosphate isomerase Y89_3024 PF02397 Bacterial sugar transferase Y89_3026 PF03473 MOSC domain Y89_3026 PF03475 3-alpha domain Y89_3028 PF12833 Helix-turn-helix domain Y89_3028 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y89_3033 PF13556 PucR C-terminal helix-turn-helix domain Y89_3033 PF07905 Purine catabolism regulatory protein-like family Y89_3033 PF17853 GGDEF-like domain Y89_3034 PF05721 Phytanoyl-CoA dioxygenase (PhyH) Y89_3035 PF14870 Photosynthesis system II assembly factor YCF48 Y89_3036 PF03176 MMPL family Y89_3040 PF01266 FAD dependent oxidoreductase Y89_3041 PF05721 Phytanoyl-CoA dioxygenase (PhyH) Y89_3043 PF00743 Flavin-binding monooxygenase-like Y89_3045 PF00465 Iron-containing alcohol dehydrogenase Y89_3046 PF00324 Amino acid permease Y89_3047 PF00171 Aldehyde dehydrogenase family Y89_3048 PF00202 Aminotransferase class-III Y89_3051 PF00474 Sodium:solute symporter family Y89_3052 PF04341 Protein of unknown function, DUF485 Y89_3053 PF00501 AMP-binding enzyme Y89_3053 PF13193 AMP-binding enzyme C-terminal domain Y89_3055 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_3055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_3055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_3058 PF00158 Sigma-54 interaction domain Y89_3058 PF02954 Bacterial regulatory protein, Fis family Y89_3058 PF06506 Propionate catabolism activator Y89_3060 PF02470 MlaD protein Y89_3061 PF04403 Paraquat-inducible protein A Y89_3062 PF00171 Aldehyde dehydrogenase family Y89_3064 PF13378 Enolase C-terminal domain-like Y89_3064 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Y89_3065 PF07690 Major Facilitator Superfamily Y89_3066 PF03573 outer membrane porin, OprD family Y89_3067 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Y89_3068 PF04909 Amidohydrolase Y89_3069 PF07690 Major Facilitator Superfamily Y89_3072 PF01970 Tripartite tricarboxylate transporter TctA family Y89_3073 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3073 PF03466 LysR substrate binding domain Y89_3076 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3077 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3079 PF00563 EAL domain Y89_3079 PF00990 Diguanylate cyclase, GGDEF domain Y89_3079 PF03707 Bacterial signalling protein N terminal repeat Y89_3080 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y89_3080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y89_3082 PF00107 Zinc-binding dehydrogenase Y89_3082 PF16884 N-terminal domain of oxidoreductase Y89_3083 PF00440 Bacterial regulatory proteins, tetR family Y89_3083 PF16925 Tetracyclin repressor-like, C-terminal domain Y89_3084 PF01266 FAD dependent oxidoreductase Y89_3085 PF04324 BFD-like [2Fe-2S] binding domain Y89_3085 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_3087 PF00571 CBS domain Y89_3088 PF03497 Anthrax toxin LF subunit Y89_3088 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain Y89_3092 PF04107 Glutamate-cysteine ligase family 2(GCS2) Y89_3094 PF17827 PrmC N-terminal domain Y89_3094 PF05175 Methyltransferase small domain Y89_3097 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3097 PF13426 PAS domain Y89_3097 PF00072 Response regulator receiver domain Y89_3103 PF05343 M42 glutamyl aminopeptidase Y89_3111 PF08323 Starch synthase catalytic domain Y89_3111 PF00534 Glycosyl transferases group 1 Y89_3112 PF00128 Alpha amylase, catalytic domain Y89_3112 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Y89_3112 PF11941 Domain of unknown function (DUF3459) Y89_3113 PF02446 4-alpha-glucanotransferase Y89_3114 PF00128 Alpha amylase, catalytic domain Y89_3116 PF00128 Alpha amylase, catalytic domain Y89_3116 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Y89_3118 PF00107 Zinc-binding dehydrogenase Y89_3118 PF08240 Alcohol dehydrogenase GroES-like domain Y89_3118 PF13823 Alcohol dehydrogenase GroES-associated Y89_3120 PF03372 Endonuclease/Exonuclease/phosphatase family Y89_3121 PF13091 PLD-like domain Y89_3122 PF03706 Lysylphosphatidylglycerol synthase TM region Y89_3123 PF00128 Alpha amylase, catalytic domain Y89_3123 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Y89_3123 PF02806 Alpha amylase, C-terminal all-beta domain Y89_3124 PF00128 Alpha amylase, catalytic domain Y89_3124 PF16657 Maltogenic Amylase, C-terminal domain Y89_3125 PF00128 Alpha amylase, catalytic domain Y89_3125 PF11896 Domain of unknown function (DUF3416) Y89_3126 PF02735 Ku70/Ku80 beta-barrel domain Y89_3128 PF02308 MgtC family Y89_3130 PF06628 Catalase-related immune-responsive Y89_3130 PF00199 Catalase Y89_3130 PF18011 C-terminal domain found in long catalases Y89_3134 PF00343 Carbohydrate phosphorylase Y89_3138 PF02464 Competence-damaged protein Y89_3141 PF04679 ATP dependent DNA ligase C terminal region Y89_3141 PF13298 DNA polymerase Ligase (LigD) Y89_3141 PF01068 ATP dependent DNA ligase domain Y89_3148 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y89_3148 PF02753 Pili assembly chaperone PapD, C-terminal domain Y89_3150 PF00577 Outer membrane usher protein Y89_3150 PF13953 PapC C-terminal domain Y89_3150 PF13954 PapC N-terminal domain Y89_3151 PF02753 Pili assembly chaperone PapD, C-terminal domain Y89_3151 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y89_3153 PF11922 Domain of unknown function (DUF3440) Y89_3153 PF01507 Phosphoadenosine phosphosulfate reductase family Y89_3154 PF02195 ParB-like nuclease domain Y89_3156 PF05199 GMC oxidoreductase Y89_3156 PF00732 GMC oxidoreductase Y89_3157 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3157 PF03466 LysR substrate binding domain Y89_3159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3159 PF03466 LysR substrate binding domain Y89_3161 PF08240 Alcohol dehydrogenase GroES-like domain Y89_3161 PF00107 Zinc-binding dehydrogenase Y89_3163 PF02805 Metal binding domain of Ada Y89_3163 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y89_3163 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Y89_3163 PF12833 Helix-turn-helix domain Y89_3165 PF07286 Protein of unknown function (DUF1445) Y89_3166 PF03466 LysR substrate binding domain Y89_3166 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3169 PF03746 LamB/YcsF family Y89_3171 PF02626 Carboxyltransferase domain, subdomain A and B Y89_3173 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_3173 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_3173 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_3175 PF00106 short chain dehydrogenase Y89_3176 PF07859 alpha/beta hydrolase fold Y89_3177 PF00743 Flavin-binding monooxygenase-like Y89_3178 PF12833 Helix-turn-helix domain Y89_3178 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y89_3181 PF04545 Sigma-70, region 4 Y89_3181 PF04542 Sigma-70 region 2 Y89_3182 PF07690 Major Facilitator Superfamily Y89_3184 PF00296 Luciferase-like monooxygenase Y89_3185 PF00593 TonB dependent receptor Y89_3185 PF07715 TonB-dependent Receptor Plug Domain Y89_3188 PF00561 alpha/beta hydrolase fold Y89_3189 PF00866 Ring hydroxylating beta subunit Y89_3190 PF13537 Glutamine amidotransferase domain Y89_3190 PF00733 Asparagine synthase Y89_3191 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y89_3191 PF00355 Rieske [2Fe-2S] domain Y89_3192 PF01037 Lrp/AsnC ligand binding domain Y89_3193 PF04199 Putative cyclase Y89_3194 PF00266 Aminotransferase class-V Y89_3195 PF00324 Amino acid permease Y89_3201 PF00583 Acetyltransferase (GNAT) family Y89_3201 PF00795 Carbon-nitrogen hydrolase Y89_3202 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y89_3203 PF00563 EAL domain Y89_3203 PF08448 PAS fold Y89_3203 PF08447 PAS fold Y89_3203 PF00990 Diguanylate cyclase, GGDEF domain Y89_3204 PF14492 Elongation Factor G, domain II Y89_3204 PF00009 Elongation factor Tu GTP binding domain Y89_3204 PF03144 Elongation factor Tu domain 2 Y89_3204 PF03764 Elongation factor G, domain IV Y89_3204 PF00679 Elongation factor G C-terminus Y89_3205 PF07715 TonB-dependent Receptor Plug Domain Y89_3205 PF00593 TonB dependent receptor Y89_3206 PF02543 Carbamoyltransferase N-terminus Y89_3206 PF16861 Carbamoyltransferase C-terminus Y89_3207 PF12832 MFS_1 like family Y89_3210 PF00394 Multicopper oxidase Y89_3210 PF07731 Multicopper oxidase Y89_3210 PF07732 Multicopper oxidase Y89_3211 PF05275 Copper resistance protein B precursor (CopB) Y89_3213 PF00266 Aminotransferase class-V Y89_3214 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y89_3214 PF00005 ABC transporter Y89_3215 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3215 PF12911 N-terminal TM domain of oligopeptide transport permease C Y89_3216 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3217 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y89_3218 PF00593 TonB dependent receptor Y89_3218 PF07715 TonB-dependent Receptor Plug Domain Y89_3219 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3219 PF03466 LysR substrate binding domain Y89_3220 PF07690 Major Facilitator Superfamily Y89_3221 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3221 PF03466 LysR substrate binding domain Y89_3222 PF00484 Carbonic anhydrase Y89_3223 PF02560 Cyanate lyase C-terminal domain Y89_3225 PF08281 Sigma-70, region 4 Y89_3225 PF04542 Sigma-70 region 2 Y89_3244 PF10124 Mu-like prophage major head subunit gpT Y89_3249 PF06074 Protein of unknown function (DUF935) Y89_3250 PF03237 Terminase-like family Y89_3252 PF08461 Ribonuclease R winged-helix domain Y89_3255 PF01464 Transglycosylase SLT domain Y89_3255 PF14718 Soluble lytic murein transglycosylase L domain Y89_3265 PF00005 ABC transporter Y89_3275 PF08765 Mor transcription activator family Y89_3276 PF12833 Helix-turn-helix domain Y89_3276 PF06719 AraC-type transcriptional regulator N-terminus Y89_3278 PF01809 Putative membrane protein insertion efficiency factor Y89_3280 PF00849 RNA pseudouridylate synthase Y89_3281 PF00375 Sodium:dicarboxylate symporter family Y89_3282 PF00324 Amino acid permease Y89_3283 PF00120 Glutamine synthetase, catalytic domain Y89_3287 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_3287 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_3287 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_3289 PF08021 Siderophore-interacting FAD-binding domain Y89_3289 PF04954 Siderophore-interacting protein Y89_3290 PF00155 Aminotransferase class I and II Y89_3290 PF00392 Bacterial regulatory proteins, gntR family Y89_3294 PF01037 Lrp/AsnC ligand binding domain Y89_3294 PF13404 AsnC-type helix-turn-helix domain Y89_3296 PF13593 SBF-like CPA transporter family (DUF4137) Y89_3297 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y89_3297 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_3298 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_3299 PF00483 Nucleotidyl transferase Y89_3300 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y89_3300 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y89_3300 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y89_3302 PF08361 MAATS-type transcriptional repressor, C-terminal region Y89_3302 PF00440 Bacterial regulatory proteins, tetR family Y89_3303 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_3303 PF00529 HlyD membrane-fusion protein of T1SS Y89_3304 PF00873 AcrB/AcrD/AcrF family Y89_3306 PF06977 SdiA-regulated Y89_3307 PF13411 MerR HTH family regulatory protein Y89_3308 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_3308 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_3308 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_3309 PF01039 Carboxyl transferase domain Y89_3311 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_3311 PF02785 Biotin carboxylase C-terminal domain Y89_3311 PF00364 Biotin-requiring enzyme Y89_3311 PF00289 Biotin carboxylase, N-terminal domain Y89_3312 PF00682 HMGL-like Y89_3314 PF04209 homogentisate 1,2-dioxygenase Y89_3315 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_3316 PF13417 Glutathione S-transferase, N-terminal domain Y89_3317 PF07690 Major Facilitator Superfamily Y89_3318 PF00158 Sigma-54 interaction domain Y89_3318 PF00989 PAS fold Y89_3318 PF02954 Bacterial regulatory protein, Fis family Y89_3320 PF00106 short chain dehydrogenase Y89_3321 PF02667 Short chain fatty acid transporter Y89_3322 PF00108 Thiolase, N-terminal domain Y89_3322 PF02803 Thiolase, C-terminal domain Y89_3323 PF01144 Coenzyme A transferase Y89_3324 PF01144 Coenzyme A transferase Y89_3325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3325 PF03466 LysR substrate binding domain Y89_3326 PF00501 AMP-binding enzyme Y89_3326 PF13193 AMP-binding enzyme C-terminal domain Y89_3330 PF07690 Major Facilitator Superfamily Y89_3331 PF00512 His Kinase A (phospho-acceptor) domain Y89_3331 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3332 PF00465 Iron-containing alcohol dehydrogenase Y89_3334 PF04055 Radical SAM superfamily Y89_3334 PF13186 Iron-sulfur cluster-binding domain Y89_3335 PF05402 Coenzyme PQQ synthesis protein D (PqqD) Y89_3336 PF03070 TENA/THI-4/PQQC family Y89_3337 PF12706 Beta-lactamase superfamily domain Y89_3338 PF08042 PqqA family Y89_3339 PF00171 Aldehyde dehydrogenase family Y89_3340 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_3340 PF01011 PQQ enzyme repeat Y89_3340 PF13360 PQQ-like domain Y89_3343 PF00196 Bacterial regulatory proteins, luxR family Y89_3343 PF00072 Response regulator receiver domain Y89_3346 PF00072 Response regulator receiver domain Y89_3346 PF00196 Bacterial regulatory proteins, luxR family Y89_3347 PF00892 EamA-like transporter family Y89_3348 PF00072 Response regulator receiver domain Y89_3348 PF00512 His Kinase A (phospho-acceptor) domain Y89_3348 PF09456 RcsC Alpha-Beta-Loop (ABL) Y89_3348 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3351 PF00675 Insulinase (Peptidase family M16) Y89_3351 PF05193 Peptidase M16 inactive domain Y89_3352 PF00884 Sulfatase Y89_3352 PF08019 Phosphoethanolamine transferase EptA/EptB Y89_3353 PF05525 Branched-chain amino acid transport protein Y89_3360 PF00005 ABC transporter Y89_3360 PF12848 ABC transporter Y89_3362 PF02525 Flavodoxin-like fold Y89_3363 PF03466 LysR substrate binding domain Y89_3363 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3364 PF00313 'Cold-shock' DNA-binding domain Y89_3365 PF02673 Bacitracin resistance protein BacA Y89_3374 PF00294 pfkB family carbohydrate kinase Y89_3375 PF00356 Bacterial regulatory proteins, lacI family Y89_3376 PF02653 Branched-chain amino acid transport system / permease component Y89_3377 PF00005 ABC transporter Y89_3378 PF13407 Periplasmic binding protein domain Y89_3379 PF00158 Sigma-54 interaction domain Y89_3379 PF00072 Response regulator receiver domain Y89_3379 PF02954 Bacterial regulatory protein, Fis family Y89_3384 PF00199 Catalase Y89_3385 PF01527 Transposase Y89_3386 PF00665 Integrase core domain Y89_3388 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y89_3388 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y89_3389 PF03450 CO dehydrogenase flavoprotein C-terminal domain Y89_3389 PF00941 FAD binding domain in molybdopterin dehydrogenase Y89_3390 PF10518 TAT (twin-arginine translocation) pathway signal sequence Y89_3390 PF01799 [2Fe-2S] binding domain Y89_3390 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_3391 PF13426 PAS domain Y89_3391 PF08447 PAS fold Y89_3391 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_3393 PF13302 Acetyltransferase (GNAT) domain Y89_3394 PF08267 Cobalamin-independent synthase, N-terminal domain Y89_3394 PF01717 Cobalamin-independent synthase, Catalytic domain Y89_3395 PF18381 YcaO cyclodehydratase C-terminal domain Y89_3395 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding Y89_3398 PF02514 CobN/Magnesium Chelatase Y89_3399 PF00593 TonB dependent receptor Y89_3399 PF07715 TonB-dependent Receptor Plug Domain Y89_3400 PF01795 MraW methylase family Y89_3401 PF00317 Ribonucleotide reductase, all-alpha domain Y89_3401 PF03477 ATP cone domain Y89_3401 PF02867 Ribonucleotide reductase, barrel domain Y89_3404 PF01266 FAD dependent oxidoreductase Y89_3407 PF07905 Purine catabolism regulatory protein-like family Y89_3407 PF13556 PucR C-terminal helix-turn-helix domain Y89_3411 PF04542 Sigma-70 region 2 Y89_3411 PF08281 Sigma-70, region 4 Y89_3412 PF16220 Domain of unknown function (DUF4880) Y89_3412 PF04773 FecR protein Y89_3413 PF07715 TonB-dependent Receptor Plug Domain Y89_3413 PF00593 TonB dependent receptor Y89_3414 PF03929 PepSY-associated TM region Y89_3416 PF07690 Major Facilitator Superfamily Y89_3419 PF01243 Pyridoxamine 5'-phosphate oxidase Y89_3419 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Y89_3420 PF02567 Phenazine biosynthesis-like protein Y89_3421 PF00425 chorismate binding enzyme Y89_3421 PF00117 Glutamine amidotransferase class-I Y89_3422 PF00857 Isochorismatase family Y89_3423 PF01474 Class-II DAHP synthetase family Y89_3424 PF03284 Phenazine biosynthesis protein A/B Y89_3425 PF03284 Phenazine biosynthesis protein A/B Y89_3426 PF03472 Autoinducer binding domain Y89_3426 PF00196 Bacterial regulatory proteins, luxR family Y89_3431 PF01804 Penicillin amidase Y89_3434 PF00043 Glutathione S-transferase, C-terminal domain Y89_3434 PF13417 Glutathione S-transferase, N-terminal domain Y89_3439 PF03104 DNA polymerase family B, exonuclease domain Y89_3439 PF00136 DNA polymerase family B Y89_3442 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Y89_3443 PF00893 Small Multidrug Resistance protein Y89_3444 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_3444 PF01799 [2Fe-2S] binding domain Y89_3445 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y89_3448 PF00529 HlyD membrane-fusion protein of T1SS Y89_3448 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_3449 PF00664 ABC transporter transmembrane region Y89_3449 PF00005 ABC transporter Y89_3449 PF03412 Peptidase C39 family Y89_3454 PF01551 Peptidase family M23 Y89_3456 PF00550 Phosphopantetheine attachment site Y89_3457 PF03958 Bacterial type II/III secretion system short domain Y89_3457 PF00263 Bacterial type II and III secretion system protein Y89_3461 PF08774 VRR-NUC domain Y89_3461 PF18081 Fanconi anemia-associated nuclease SAP domain Y89_3462 PF08361 MAATS-type transcriptional repressor, C-terminal region Y89_3462 PF00440 Bacterial regulatory proteins, tetR family Y89_3464 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3465 PF00005 ABC transporter Y89_3465 PF03459 TOBE domain Y89_3466 PF04072 Leucine carboxyl methyltransferase Y89_3467 PF03466 LysR substrate binding domain Y89_3467 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3468 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase Y89_3470 PF05661 Protein of unknown function (DUF808) Y89_3471 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y89_3473 PF01769 Divalent cation transporter Y89_3473 PF00571 CBS domain Y89_3473 PF03448 MgtE intracellular N domain Y89_3474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3474 PF03466 LysR substrate binding domain Y89_3476 PF00563 EAL domain Y89_3476 PF01590 GAF domain Y89_3476 PF00990 Diguanylate cyclase, GGDEF domain Y89_3476 PF00360 Phytochrome region Y89_3477 PF01965 DJ-1/PfpI family Y89_3477 PF12833 Helix-turn-helix domain Y89_3478 PF06906 Protein of unknown function (DUF1272) Y89_3480 PF01106 NifU-like domain Y89_3480 PF01521 Iron-sulphur cluster biosynthesis Y89_3484 PF02574 Homocysteine S-methyltransferase Y89_3484 PF00809 Pterin binding enzyme Y89_3484 PF02965 Vitamin B12 dependent methionine synthase, activation domain Y89_3484 PF02607 B12 binding domain Y89_3484 PF02310 B12 binding domain Y89_3488 PF04055 Radical SAM superfamily Y89_3491 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y89_3491 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y89_3496 PF08240 Alcohol dehydrogenase GroES-like domain Y89_3496 PF00107 Zinc-binding dehydrogenase Y89_3497 PF08496 Peptidase family S49 N-terminal Y89_3497 PF01343 Peptidase family S49 Y89_3503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3503 PF03466 LysR substrate binding domain Y89_3504 PF00565 Staphylococcal nuclease homologue Y89_3505 PF01925 Sulfite exporter TauE/SafE Y89_3506 PF00293 NUDIX domain Y89_3506 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Y89_3506 PF09297 NADH pyrophosphatase zinc ribbon domain Y89_3508 PF00378 Enoyl-CoA hydratase/isomerase Y89_3509 PF06450 Bacterial Na+/H+ antiporter B (NhaB) Y89_3510 PF13520 Amino acid permease Y89_3511 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Y89_3511 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Y89_3511 PF01276 Orn/Lys/Arg decarboxylase, major domain Y89_3513 PF00929 Exonuclease Y89_3514 PF00075 RNase H Y89_3516 PF00753 Metallo-beta-lactamase superfamily Y89_3516 PF16123 Hydroxyacylglutathione hydrolase C-terminus Y89_3517 PF01464 Transglycosylase SLT domain Y89_3517 PF01476 LysM domain Y89_3518 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y89_3519 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y89_3520 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3521 PF12911 N-terminal TM domain of oligopeptide transport permease C Y89_3521 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3522 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y89_3522 PF00005 ABC transporter Y89_3524 PF05698 Bacterial trigger factor protein (TF) C-terminus Y89_3525 PF00216 Bacterial DNA-binding protein Y89_3526 PF02190 ATP-dependent protease La (LON) substrate-binding domain Y89_3526 PF00004 ATPase family associated with various cellular activities (AAA) Y89_3526 PF05362 Lon protease (S16) C-terminal proteolytic domain Y89_3527 PF06689 ClpX C4-type zinc finger Y89_3527 PF07724 AAA domain (Cdc48 subfamily) Y89_3527 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_3528 PF00574 Clp protease Y89_3529 PF05697 Bacterial trigger factor protein (TF) Y89_3529 PF05698 Bacterial trigger factor protein (TF) C-terminus Y89_3529 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y89_3530 PF00486 Transcriptional regulatory protein, C terminal Y89_3530 PF00072 Response regulator receiver domain Y89_3531 PF00512 His Kinase A (phospho-acceptor) domain Y89_3531 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3531 PF00672 HAMP domain Y89_3532 PF00144 Beta-lactamase Y89_3536 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Y89_3536 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Y89_3537 PF01406 tRNA synthetases class I (C) catalytic domain Y89_3537 PF09190 DALR domain Y89_3538 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Y89_3538 PF00749 tRNA synthetases class I (E and Q), catalytic domain Y89_3539 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Y89_3540 PF00149 Calcineurin-like phosphoesterase Y89_3542 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) Y89_3543 PF00582 Universal stress protein family Y89_3545 PF06434 Aconitate hydratase 2 N-terminus Y89_3545 PF11791 Aconitate B N-terminal domain Y89_3545 PF00330 Aconitase family (aconitate hydratase) Y89_3547 PF00072 Response regulator receiver domain Y89_3547 PF01339 CheB methylesterase Y89_3549 PF07690 Major Facilitator Superfamily Y89_3550 PF03793 PASTA domain Y89_3550 PF00069 Protein kinase domain Y89_3551 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y89_3551 PF04324 BFD-like [2Fe-2S] binding domain Y89_3551 PF18267 Rubredoxin NAD+ reductase C-terminal domain Y89_3551 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_3551 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y89_3552 PF00355 Rieske [2Fe-2S] domain Y89_3553 PF01568 Molydopterin dinucleotide binding domain Y89_3553 PF00384 Molybdopterin oxidoreductase Y89_3553 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y89_3553 PF04324 BFD-like [2Fe-2S] binding domain Y89_3554 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_3555 PF05736 OprF membrane domain Y89_3555 PF00691 OmpA family Y89_3557 PF05552 Conserved TM helix Y89_3559 PF01544 CorA-like Mg2+ transporter protein Y89_3560 PF03737 Aldolase/RraA Y89_3562 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Y89_3562 PF00391 PEP-utilising enzyme, mobile domain Y89_3562 PF02896 PEP-utilising enzyme, TIM barrel domain Y89_3563 PF03618 Kinase/pyrophosphorylase Y89_3564 PF18030 RimK PreATP-grasp domain Y89_3564 PF08443 RimK-like ATP-grasp domain Y89_3572 PF00196 Bacterial regulatory proteins, luxR family Y89_3572 PF17874 MalT-like TPR region Y89_3573 PF00196 Bacterial regulatory proteins, luxR family Y89_3573 PF17874 MalT-like TPR region Y89_3574 PF00425 chorismate binding enzyme Y89_3574 PF04715 Anthranilate synthase component I, N terminal region Y89_3578 PF03466 LysR substrate binding domain Y89_3578 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3580 PF02558 Ketopantoate reductase PanE/ApbA Y89_3580 PF08546 Ketopantoate reductase PanE/ApbA C terminal Y89_3582 PF00793 DAHP synthetase I family Y89_3590 PF00117 Glutamine amidotransferase class-I Y89_3590 PF00958 GMP synthase C terminal domain Y89_3590 PF02540 NAD synthase Y89_3593 PF00248 Aldo/keto reductase family Y89_3594 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3594 PF03466 LysR substrate binding domain Y89_3595 PF00378 Enoyl-CoA hydratase/isomerase Y89_3595 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_3595 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_3596 PF02803 Thiolase, C-terminal domain Y89_3596 PF00108 Thiolase, N-terminal domain Y89_3601 PF01841 Transglutaminase-like superfamily Y89_3601 PF08379 Bacterial transglutaminase-like N-terminal region Y89_3602 PF14403 Circularly permuted ATP-grasp type 2 Y89_3602 PF04168 A predicted alpha-helical domain with a conserved ER motif. Y89_3603 PF14403 Circularly permuted ATP-grasp type 2 Y89_3604 PF00117 Glutamine amidotransferase class-I Y89_3604 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Y89_3606 PF00990 Diguanylate cyclase, GGDEF domain Y89_3606 PF00563 EAL domain Y89_3606 PF03707 Bacterial signalling protein N terminal repeat Y89_3607 PF00933 Glycosyl hydrolase family 3 N terminal domain Y89_3607 PF01915 Glycosyl hydrolase family 3 C-terminal domain Y89_3607 PF14310 Fibronectin type III-like domain Y89_3608 PF02108 Flagellar assembly protein FliH Y89_3609 PF06578 YOP proteins translocation protein K (YscK) Y89_3610 PF01514 Secretory protein of YscJ/FliF family Y89_3611 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI Y89_3613 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) Y89_3614 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF Y89_3615 PF08988 Type III secretion system, cytoplasmic E component of needle Y89_3616 PF16697 Inner membrane component of T3SS, cytoplasmic domain Y89_3616 PF16693 Inner membrane component of T3SS, periplasmic domain Y89_3618 PF05932 Tir chaperone protein (CesT) family Y89_3620 PF12833 Helix-turn-helix domain Y89_3621 PF09619 Type III secretion system lipoprotein chaperone (YscW) Y89_3623 PF05932 Tir chaperone protein (CesT) family Y89_3625 PF04888 Secretion system effector C (SseC) like family Y89_3626 PF07720 Tetratricopeptide repeat Y89_3627 PF04792 V antigen (LcrV) protein Y89_3629 PF09621 Type III secretion system regulator (LcrR) Y89_3630 PF00771 FHIPEP family Y89_3634 PF09059 TyeA Y89_3635 PF07201 HrpJ-like domain Y89_3636 PF18269 T3SS EscN ATPase C-terminal domain Y89_3636 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y89_3636 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y89_3639 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Y89_3640 PF00813 FliP family Y89_3641 PF01313 Bacterial export proteins, family 3 Y89_3642 PF01311 Bacterial export proteins, family 1 Y89_3643 PF01312 FlhB HrpN YscU SpaS Family Y89_3646 PF17284 Spermidine synthase tetramerisation domain Y89_3647 PF02805 Metal binding domain of Ada Y89_3647 PF06029 AlkA N-terminal domain Y89_3647 PF12833 Helix-turn-helix domain Y89_3647 PF00730 HhH-GPD superfamily base excision DNA repair protein Y89_3650 PF03079 ARD/ARD' family Y89_3651 PF00596 Class II Aldolase and Adducin N-terminal domain Y89_3653 PF01264 Chorismate synthase Y89_3656 PF05175 Methyltransferase small domain Y89_3659 PF01713 Smr domain Y89_3660 PF01227 GTP cyclohydrolase I Y89_3661 PF01814 Hemerythrin HHE cation binding domain Y89_3663 PF03793 PASTA domain Y89_3663 PF00069 Protein kinase domain Y89_3671 PF00158 Sigma-54 interaction domain Y89_3671 PF00072 Response regulator receiver domain Y89_3671 PF02954 Bacterial regulatory protein, Fis family Y89_3672 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_3672 PF17871 AAA lid domain Y89_3672 PF00004 ATPase family associated with various cellular activities (AAA) Y89_3672 PF07724 AAA domain (Cdc48 subfamily) Y89_3679 PF02798 Glutathione S-transferase, N-terminal domain Y89_3680 PF00155 Aminotransferase class I and II Y89_3683 PF03594 Benzoate membrane transport protein Y89_3686 PF16884 N-terminal domain of oxidoreductase Y89_3686 PF00107 Zinc-binding dehydrogenase Y89_3687 PF00916 Sulfate permease family Y89_3687 PF01740 STAS domain Y89_3688 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_3688 PF00672 HAMP domain Y89_3690 PF01613 Flavin reductase like domain Y89_3693 PF00586 AIR synthase related protein, N-terminal domain Y89_3693 PF02769 AIR synthase related protein, C-terminal domain Y89_3695 PF01734 Patatin-like phospholipase Y89_3697 PF04960 Glutaminase Y89_3698 PF00072 Response regulator receiver domain Y89_3698 PF00486 Transcriptional regulatory protein, C terminal Y89_3699 PF02702 Osmosensitive K+ channel His kinase sensor domain Y89_3699 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3699 PF13492 GAF domain Y89_3699 PF13493 Domain of unknown function (DUF4118) Y89_3699 PF00512 His Kinase A (phospho-acceptor) domain Y89_3700 PF02669 K+-transporting ATPase, c chain Y89_3702 PF03814 Potassium-transporting ATPase A subunit Y89_3704 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_3704 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_3704 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_3705 PF09339 IclR helix-turn-helix domain Y89_3706 PF00378 Enoyl-CoA hydratase/isomerase Y89_3707 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Y89_3707 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_3707 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_3708 PF07729 FCD domain Y89_3708 PF00392 Bacterial regulatory proteins, gntR family Y89_3709 PF07690 Major Facilitator Superfamily Y89_3710 PF01594 AI-2E family transporter Y89_3712 PF02798 Glutathione S-transferase, N-terminal domain Y89_3712 PF00043 Glutathione S-transferase, C-terminal domain Y89_3716 PF02311 AraC-like ligand binding domain Y89_3716 PF12833 Helix-turn-helix domain Y89_3717 PF03061 Thioesterase superfamily Y89_3718 PF00501 AMP-binding enzyme Y89_3721 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Y89_3721 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Y89_3722 PF07715 TonB-dependent Receptor Plug Domain Y89_3722 PF00593 TonB dependent receptor Y89_3724 PF01627 Hpt domain Y89_3724 PF00672 HAMP domain Y89_3724 PF00072 Response regulator receiver domain Y89_3724 PF00512 His Kinase A (phospho-acceptor) domain Y89_3724 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y89_3724 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3725 PF07977 FabA-like domain Y89_3726 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_3726 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_3727 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_3727 PF00672 HAMP domain Y89_3727 PF12729 Four helix bundle sensory module for signal transduction Y89_3728 PF01638 HxlR-like helix-turn-helix Y89_3732 PF12802 MarR family Y89_3733 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_3733 PF01799 [2Fe-2S] binding domain Y89_3734 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y89_3734 PF00034 Cytochrome c Y89_3734 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_3735 PF00034 Cytochrome c Y89_3735 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y89_3735 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_3736 PF12833 Helix-turn-helix domain Y89_3736 PF02311 AraC-like ligand binding domain Y89_3737 PF02548 Ketopantoate hydroxymethyltransferase Y89_3739 PF00183 Hsp90 protein Y89_3739 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3745 PF05525 Branched-chain amino acid transport protein Y89_3746 PF00549 CoA-ligase Y89_3746 PF02629 CoA binding domain Y89_3747 PF08442 ATP-grasp domain Y89_3747 PF00549 CoA-ligase Y89_3748 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y89_3748 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_3749 PF00364 Biotin-requiring enzyme Y89_3749 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Y89_3749 PF02817 e3 binding domain Y89_3750 PF16078 2-oxoglutarate dehydrogenase N-terminus Y89_3750 PF02779 Transketolase, pyrimidine binding domain Y89_3750 PF16870 2-oxoglutarate dehydrogenase C-terminal Y89_3750 PF00676 Dehydrogenase E1 component Y89_3751 PF13085 2Fe-2S iron-sulfur cluster binding domain Y89_3752 PF00890 FAD binding domain Y89_3752 PF02910 Fumarate reductase flavoprotein C-term Y89_3753 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Y89_3754 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Y89_3755 PF00285 Citrate synthase, C-terminal domain Y89_3756 PF01852 START domain Y89_3757 PF03692 Putative zinc- or iron-chelating domain Y89_3760 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y89_3760 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y89_3762 PF06865 Pyrimidine/purine nucleoside phosphorylase Y89_3763 PF06940 Domain of unknown function (DUF1287) Y89_3766 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3766 PF03466 LysR substrate binding domain Y89_3768 PF01042 Endoribonuclease L-PSP Y89_3769 PF01266 FAD dependent oxidoreductase Y89_3770 PF00120 Glutamine synthetase, catalytic domain Y89_3771 PF01266 FAD dependent oxidoreductase Y89_3772 PF01206 Sulfurtransferase TusA Y89_3773 PF01728 FtsJ-like methyltransferase Y89_3773 PF18125 RlmM ferredoxin-like domain Y89_3774 PF00330 Aconitase family (aconitate hydratase) Y89_3774 PF00694 Aconitase C-terminal domain Y89_3776 PF08447 PAS fold Y89_3776 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_3779 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y89_3782 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Y89_3782 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_3783 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y89_3786 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_3786 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Y89_3787 PF13746 4Fe-4S dicluster domain Y89_3787 PF12801 4Fe-4S binding domain Y89_3787 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Y89_3789 PF00403 Heavy-metal-associated domain Y89_3792 PF06969 HemN C-terminal domain Y89_3792 PF04055 Radical SAM superfamily Y89_3794 PF00027 Cyclic nucleotide-binding domain Y89_3794 PF00325 Bacterial regulatory proteins, crp family Y89_3795 PF00156 Phosphoribosyl transferase domain Y89_3797 PF00893 Small Multidrug Resistance protein Y89_3798 PF00893 Small Multidrug Resistance protein Y89_3799 PF00440 Bacterial regulatory proteins, tetR family Y89_3800 PF00743 Flavin-binding monooxygenase-like Y89_3801 PF00106 short chain dehydrogenase Y89_3802 PF03691 Uncharacterised protein family (UPF0167) Y89_3803 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_3803 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_3803 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_3804 PF02132 RecR protein Y89_3804 PF13662 Toprim domain Y89_3805 PF02575 YbaB/EbfC DNA-binding family Y89_3806 PF12170 DNA polymerase III tau subunit V interacting with alpha Y89_3806 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Y89_3806 PF12169 DNA polymerase III subunits gamma and tau domain III Y89_3809 PF12826 Helix-hairpin-helix motif Y89_3809 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Y89_3809 PF03120 NAD-dependent DNA ligase OB-fold domain Y89_3809 PF00533 BRCA1 C Terminus (BRCT) domain Y89_3809 PF01653 NAD-dependent DNA ligase adenylation domain Y89_3810 PF04354 ZipA, C-terminal FtsZ-binding domain Y89_3811 PF06470 SMC proteins Flexible Hinge Domain Y89_3811 PF02463 RecF/RecN/SMC N terminal domain Y89_3813 PF00487 Fatty acid desaturase Y89_3814 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_3814 PF01799 [2Fe-2S] binding domain Y89_3815 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y89_3815 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y89_3817 PF01979 Amidohydrolase family Y89_3819 PF00860 Permease family Y89_3820 PF00576 HIUase/Transthyretin family Y89_3821 PF01522 Polysaccharide deacetylase Y89_3823 PF03561 Allantoicase repeat Y89_3824 PF04115 Ureidoglycolate lyase Y89_3826 PF05638 Type VI secretion system effector, Hcp Y89_3827 PF04717 Type VI secretion system, phage-baseplate injector Y89_3831 PF00860 Permease family Y89_3833 PF04055 Radical SAM superfamily Y89_3833 PF06463 Molybdenum Cofactor Synthesis C Y89_3834 PF00440 Bacterial regulatory proteins, tetR family Y89_3834 PF08362 YcdC-like protein, C-terminal region Y89_3836 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_3836 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_3836 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_3837 PF01261 Xylose isomerase-like TIM barrel Y89_3838 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y89_3838 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y89_3839 PF05161 MOFRL family Y89_3839 PF13660 Domain of unknown function (DUF4147) Y89_3840 PF02887 Pyruvate kinase, alpha/beta domain Y89_3840 PF00224 Pyruvate kinase, barrel domain Y89_3841 PF03253 Urea transporter Y89_3842 PF00027 Cyclic nucleotide-binding domain Y89_3842 PF00520 Ion transport protein Y89_3847 PF04346 Ethanolamine utilisation protein, EutH Y89_3848 PF00455 DeoR C terminal sensor domain Y89_3848 PF08220 DeoR-like helix-turn-helix domain Y89_3849 PF04324 BFD-like [2Fe-2S] binding domain Y89_3849 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_3850 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_3850 PF04324 BFD-like [2Fe-2S] binding domain Y89_3851 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y89_3851 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y89_3852 PF03576 Peptidase family S58 Y89_3854 PF00196 Bacterial regulatory proteins, luxR family Y89_3854 PF00072 Response regulator receiver domain Y89_3857 PF03918 Cytochrome C biogenesis protein Y89_3858 PF08534 Redoxin Y89_3859 PF01578 Cytochrome C assembly protein Y89_3859 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Y89_3860 PF03100 CcmE Y89_3861 PF04995 Heme exporter protein D (CcmD) Y89_3862 PF01578 Cytochrome C assembly protein Y89_3863 PF03379 CcmB protein Y89_3864 PF00005 ABC transporter Y89_3866 PF01312 FlhB HrpN YscU SpaS Family Y89_3867 PF13302 Acetyltransferase (GNAT) domain Y89_3875 PF01584 CheW-like domain Y89_3877 PF13614 AAA domain Y89_3878 PF13677 Membrane MotB of proton-channel complex MotA/MotB Y89_3878 PF00691 OmpA family Y89_3879 PF01618 MotA/TolQ/ExbB proton channel family Y89_3880 PF00072 Response regulator receiver domain Y89_3880 PF01339 CheB methylesterase Y89_3881 PF07194 P2 response regulator binding domain Y89_3881 PF01584 CheW-like domain Y89_3881 PF01627 Hpt domain Y89_3881 PF02895 Signal transducing histidine kinase, homodimeric domain Y89_3881 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3882 PF04344 Chemotaxis phosphatase, CheZ Y89_3883 PF00072 Response regulator receiver domain Y89_3884 PF04545 Sigma-70, region 4 Y89_3884 PF04539 Sigma-70 region 3 Y89_3884 PF04542 Sigma-70 region 2 Y89_3885 PF10609 NUBPL iron-transfer P-loop NTPase Y89_3886 PF00448 SRP54-type protein, GTPase domain Y89_3887 PF00771 FHIPEP family Y89_3888 PF04536 TPM domain Y89_3890 PF01312 FlhB HrpN YscU SpaS Family Y89_3891 PF01311 Bacterial export proteins, family 1 Y89_3892 PF01313 Bacterial export proteins, family 3 Y89_3893 PF00813 FliP family Y89_3894 PF04347 Flagellar biosynthesis protein, FliO Y89_3895 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Y89_3896 PF02154 Flagellar motor switch protein FliM Y89_3896 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Y89_3900 PF04304 Protein of unknown function (DUF454) Y89_3901 PF00672 HAMP domain Y89_3901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3901 PF00512 His Kinase A (phospho-acceptor) domain Y89_3902 PF00072 Response regulator receiver domain Y89_3902 PF00486 Transcriptional regulatory protein, C terminal Y89_3903 PF00873 AcrB/AcrD/AcrF family Y89_3904 PF13533 Biotin-lipoyl like Y89_3906 PF00563 EAL domain Y89_3906 PF00990 Diguanylate cyclase, GGDEF domain Y89_3906 PF03707 Bacterial signalling protein N terminal repeat Y89_3906 PF13188 PAS domain Y89_3907 PF00765 Autoinducer synthase Y89_3909 PF03472 Autoinducer binding domain Y89_3909 PF00196 Bacterial regulatory proteins, luxR family Y89_3910 PF00690 Cation transporter/ATPase, N-terminus Y89_3910 PF00689 Cation transporting ATPase, C-terminus Y89_3911 PF13673 Acetyltransferase (GNAT) domain Y89_3913 PF00884 Sulfatase Y89_3916 PF03795 YCII-related domain Y89_3917 PF04444 Catechol dioxygenase N terminus Y89_3917 PF00775 Dioxygenase Y89_3918 PF00465 Iron-containing alcohol dehydrogenase Y89_3919 PF00171 Aldehyde dehydrogenase family Y89_3922 PF03466 LysR substrate binding domain Y89_3922 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3926 PF13426 PAS domain Y89_3926 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_3926 PF08447 PAS fold Y89_3927 PF03466 LysR substrate binding domain Y89_3927 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3928 PF00491 Arginase family Y89_3931 PF00474 Sodium:solute symporter family Y89_3932 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_3932 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_3932 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_3933 PF01565 FAD binding domain Y89_3933 PF02913 FAD linked oxidases, C-terminal domain Y89_3936 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3936 PF03466 LysR substrate binding domain Y89_3938 PF00892 EamA-like transporter family Y89_3939 PF13416 Bacterial extracellular solute-binding protein Y89_3940 PF00850 Histone deacetylase domain Y89_3941 PF12794 Mechanosensitive ion channel inner membrane domain 1 Y89_3941 PF00924 Mechanosensitive ion channel Y89_3941 PF12795 Mechanosensitive ion channel porin domain Y89_3942 PF01170 Putative RNA methylase family UPF0020 Y89_3942 PF02926 THUMP domain Y89_3942 PF10672 S-adenosylmethionine-dependent methyltransferase Y89_3944 PF00580 UvrD/REP helicase N-terminal domain Y89_3944 PF12462 DNA helicase IV / RNA helicase N terminal Y89_3944 PF13361 UvrD-like helicase C-terminal domain Y89_3946 PF00440 Bacterial regulatory proteins, tetR family Y89_3949 PF02436 Conserved carboxylase domain Y89_3949 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_3949 PF00364 Biotin-requiring enzyme Y89_3949 PF00289 Biotin carboxylase, N-terminal domain Y89_3949 PF00682 HMGL-like Y89_3949 PF02785 Biotin carboxylase C-terminal domain Y89_3950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3950 PF03466 LysR substrate binding domain Y89_3952 PF00196 Bacterial regulatory proteins, luxR family Y89_3952 PF00072 Response regulator receiver domain Y89_3953 PF01627 Hpt domain Y89_3953 PF00512 His Kinase A (phospho-acceptor) domain Y89_3953 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3953 PF00072 Response regulator receiver domain Y89_3958 PF13439 Glycosyltransferase Family 4 Y89_3958 PF00534 Glycosyl transferases group 1 Y89_3960 PF00534 Glycosyl transferases group 1 Y89_3963 PF00005 ABC transporter Y89_3965 PF16363 GDP-mannose 4,6 dehydratase Y89_3967 PF00263 Bacterial type II and III secretion system protein Y89_3967 PF03958 Bacterial type II/III secretion system short domain Y89_3969 PF06719 AraC-type transcriptional regulator N-terminus Y89_3969 PF12833 Helix-turn-helix domain Y89_3970 PF00106 short chain dehydrogenase Y89_3972 PF00583 Acetyltransferase (GNAT) family Y89_3973 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Y89_3979 PF11890 Domain of unknown function (DUF3410) Y89_3979 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_3979 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_3980 PF01638 HxlR-like helix-turn-helix Y89_3981 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_3981 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_3983 PF02567 Phenazine biosynthesis-like protein Y89_3984 PF07715 TonB-dependent Receptor Plug Domain Y89_3984 PF00593 TonB dependent receptor Y89_3988 PF01554 MatE Y89_3989 PF00892 EamA-like transporter family Y89_3992 PF04073 Aminoacyl-tRNA editing domain Y89_3995 PF03795 YCII-related domain Y89_3997 PF07690 Major Facilitator Superfamily Y89_3998 PF08281 Sigma-70, region 4 Y89_3998 PF04542 Sigma-70 region 2 Y89_4001 PF03795 YCII-related domain Y89_4003 PF00072 Response regulator receiver domain Y89_4003 PF00196 Bacterial regulatory proteins, luxR family Y89_4004 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Y89_4004 PF01276 Orn/Lys/Arg decarboxylase, major domain Y89_4004 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Y89_4005 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Y89_4005 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Y89_4006 PF00106 short chain dehydrogenase Y89_4008 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_4009 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4010 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4011 PF00005 ABC transporter Y89_4013 PF17763 Glutaminase/Asparaginase C-terminal domain Y89_4013 PF00710 Asparaginase, N-terminal Y89_4014 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4014 PF00512 His Kinase A (phospho-acceptor) domain Y89_4014 PF02743 Cache domain Y89_4015 PF00072 Response regulator receiver domain Y89_4015 PF00158 Sigma-54 interaction domain Y89_4015 PF02954 Bacterial regulatory protein, Fis family Y89_4016 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_4019 PF03741 Integral membrane protein TerC family Y89_4019 PF03471 Transporter associated domain Y89_4019 PF00571 CBS domain Y89_4020 PF00106 short chain dehydrogenase Y89_4022 PF03466 LysR substrate binding domain Y89_4022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4023 PF01223 DNA/RNA non-specific endonuclease Y89_4024 PF00291 Pyridoxal-phosphate dependent enzyme Y89_4024 PF00585 C-terminal regulatory domain of Threonine dehydratase Y89_4025 PF13474 SnoaL-like domain Y89_4028 PF07715 TonB-dependent Receptor Plug Domain Y89_4028 PF00593 TonB dependent receptor Y89_4029 PF01040 UbiA prenyltransferase family Y89_4030 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Y89_4031 PF00510 Cytochrome c oxidase subunit III Y89_4032 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y89_4033 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Y89_4033 PF06481 COX Aromatic Rich Motif Y89_4034 PF07690 Major Facilitator Superfamily Y89_4035 PF08361 MAATS-type transcriptional repressor, C-terminal region Y89_4035 PF00440 Bacterial regulatory proteins, tetR family Y89_4037 PF07690 Major Facilitator Superfamily Y89_4038 PF03466 LysR substrate binding domain Y89_4038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4040 PF00266 Aminotransferase class-V Y89_4041 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4041 PF03466 LysR substrate binding domain Y89_4043 PF13230 Glutamine amidotransferases class-II Y89_4046 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Y89_4046 PF00326 Prolyl oligopeptidase family Y89_4047 PF10502 Signal peptidase, peptidase S26 Y89_4048 PF07715 TonB-dependent Receptor Plug Domain Y89_4048 PF00593 TonB dependent receptor Y89_4049 PF16220 Domain of unknown function (DUF4880) Y89_4049 PF04773 FecR protein Y89_4050 PF08281 Sigma-70, region 4 Y89_4050 PF04542 Sigma-70 region 2 Y89_4051 PF03692 Putative zinc- or iron-chelating domain Y89_4052 PF02583 Metal-sensitive transcriptional repressor Y89_4053 PF01545 Cation efflux family Y89_4054 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_4055 PF05166 YcgL domain Y89_4056 PF01612 3'-5' exonuclease Y89_4056 PF00570 HRDC domain Y89_4058 PF00581 Rhodanese-like domain Y89_4060 PF00440 Bacterial regulatory proteins, tetR family Y89_4062 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y89_4063 PF00255 Glutathione peroxidase Y89_4066 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_4066 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4066 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4066 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y89_4068 PF07690 Major Facilitator Superfamily Y89_4069 PF02654 Cobalamin-5-phosphate synthase Y89_4070 PF00300 Histidine phosphatase superfamily (branch 1) Y89_4071 PF02277 Phosphoribosyltransferase Y89_4072 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Y89_4073 PF07685 CobB/CobQ-like glutamine amidotransferase domain Y89_4073 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y89_4074 PF00155 Aminotransferase class I and II Y89_4075 PF03186 CobD/Cbib protein Y89_4075 PF17113 Regulatory signalling modulator protein AmpE Y89_4076 PF00881 Nitroreductase family Y89_4077 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y89_4077 PF07685 CobB/CobQ-like glutamine amidotransferase domain Y89_4078 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Y89_4078 PF12557 Cob(I)alamin adenosyltransferase N terminal Y89_4079 PF00593 TonB dependent receptor Y89_4079 PF07715 TonB-dependent Receptor Plug Domain Y89_4081 PF07729 FCD domain Y89_4081 PF00392 Bacterial regulatory proteins, gntR family Y89_4082 PF05544 Proline racemase Y89_4083 PF01266 FAD dependent oxidoreductase Y89_4085 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_4085 PF04324 BFD-like [2Fe-2S] binding domain Y89_4087 PF03466 LysR substrate binding domain Y89_4087 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4089 PF07690 Major Facilitator Superfamily Y89_4091 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_4093 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4095 PF00005 ABC transporter Y89_4096 PF05544 Proline racemase Y89_4097 PF00701 Dihydrodipicolinate synthetase family Y89_4098 PF00171 Aldehyde dehydrogenase family Y89_4099 PF02615 Malate/L-lactate dehydrogenase Y89_4100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_4100 PF12729 Four helix bundle sensory module for signal transduction Y89_4100 PF00672 HAMP domain Y89_4101 PF02974 Protease inhibitor Inh Y89_4102 PF08548 Peptidase M10 serralysin C terminal Y89_4102 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Y89_4103 PF02321 Outer membrane efflux protein Y89_4104 PF00529 HlyD membrane-fusion protein of T1SS Y89_4105 PF00664 ABC transporter transmembrane region Y89_4105 PF00005 ABC transporter Y89_4108 PF00072 Response regulator receiver domain Y89_4108 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4108 PF13426 PAS domain Y89_4111 PF00378 Enoyl-CoA hydratase/isomerase Y89_4115 PF02321 Outer membrane efflux protein Y89_4116 PF13533 Biotin-lipoyl like Y89_4117 PF07690 Major Facilitator Superfamily Y89_4118 PF02311 AraC-like ligand binding domain Y89_4118 PF12833 Helix-turn-helix domain Y89_4121 PF04632 Fusaric acid resistance protein family Y89_4122 PF13533 Biotin-lipoyl like Y89_4124 PF02311 AraC-like ligand binding domain Y89_4124 PF12833 Helix-turn-helix domain Y89_4128 PF02525 Flavodoxin-like fold Y89_4129 PF02525 Flavodoxin-like fold Y89_4130 PF03466 LysR substrate binding domain Y89_4130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4131 PF06725 3D domain Y89_4131 PF03562 MltA specific insert domain Y89_4132 PF00501 AMP-binding enzyme Y89_4132 PF13193 AMP-binding enzyme C-terminal domain Y89_4132 PF00668 Condensation domain Y89_4132 PF00550 Phosphopantetheine attachment site Y89_4136 PF00682 HMGL-like Y89_4138 PF00501 AMP-binding enzyme Y89_4138 PF13193 AMP-binding enzyme C-terminal domain Y89_4139 PF00733 Asparagine synthase Y89_4139 PF13537 Glutamine amidotransferase domain Y89_4141 PF07690 Major Facilitator Superfamily Y89_4143 PF02678 Pirin Y89_4143 PF17954 Quercetinase C-terminal cupin domain Y89_4145 PF00743 Flavin-binding monooxygenase-like Y89_4146 PF00999 Sodium/hydrogen exchanger family Y89_4146 PF02254 TrkA-N domain Y89_4148 PF02678 Pirin Y89_4148 PF05726 Pirin C-terminal cupin domain Y89_4149 PF03358 NADPH-dependent FMN reductase Y89_4151 PF00857 Isochorismatase family Y89_4152 PF03466 LysR substrate binding domain Y89_4152 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4153 PF01596 O-methyltransferase Y89_4154 PF00877 NlpC/P60 family Y89_4155 PF00877 NlpC/P60 family Y89_4156 PF02146 Sir2 family Y89_4157 PF02954 Bacterial regulatory protein, Fis family Y89_4157 PF13426 PAS domain Y89_4157 PF00158 Sigma-54 interaction domain Y89_4159 PF13520 Amino acid permease Y89_4160 PF03352 Methyladenine glycosylase Y89_4161 PF01171 PP-loop family Y89_4163 PF04893 Yip1 domain Y89_4164 PF10263 SprT-like family Y89_4164 PF17283 SprT-like zinc ribbon domain Y89_4165 PF02515 CoA-transferase family III Y89_4166 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4166 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_4166 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4167 PF00296 Luciferase-like monooxygenase Y89_4168 PF00043 Glutathione S-transferase, C-terminal domain Y89_4168 PF02798 Glutathione S-transferase, N-terminal domain Y89_4169 PF03466 LysR substrate binding domain Y89_4169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4170 PF00375 Sodium:dicarboxylate symporter family Y89_4172 PF08448 PAS fold Y89_4172 PF05231 MASE1 Y89_4172 PF00990 Diguanylate cyclase, GGDEF domain Y89_4172 PF13426 PAS domain Y89_4172 PF00563 EAL domain Y89_4172 PF08447 PAS fold Y89_4173 PF08918 PhoQ Sensor Y89_4173 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4174 PF00486 Transcriptional regulatory protein, C terminal Y89_4174 PF00072 Response regulator receiver domain Y89_4176 PF06796 Periplasmic nitrate reductase protein NapE Y89_4177 PF12800 4Fe-4S binding domain Y89_4177 PF13187 4Fe-4S dicluster domain Y89_4177 PF00037 4Fe-4S binding domain Y89_4178 PF03927 NapD protein Y89_4179 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y89_4179 PF00384 Molybdopterin oxidoreductase Y89_4179 PF01568 Molydopterin dinucleotide binding domain Y89_4180 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) Y89_4181 PF03264 NapC/NirT cytochrome c family, N-terminal region Y89_4182 PF13406 Transglycosylase SLT domain Y89_4183 PF03741 Integral membrane protein TerC family Y89_4184 PF00305 Lipoxygenase Y89_4187 PF01738 Dienelactone hydrolase family Y89_4188 PF17837 4'-phosphopantetheinyl transferase N-terminal domain Y89_4188 PF01648 4'-phosphopantetheinyl transferase superfamily Y89_4189 PF00899 ThiF family Y89_4191 PF01546 Peptidase family M20/M25/M40 Y89_4191 PF07687 Peptidase dimerisation domain Y89_4192 PF13847 Methyltransferase domain Y89_4194 PF00313 'Cold-shock' DNA-binding domain Y89_4195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4195 PF00512 His Kinase A (phospho-acceptor) domain Y89_4195 PF00672 HAMP domain Y89_4196 PF00072 Response regulator receiver domain Y89_4196 PF00486 Transcriptional regulatory protein, C terminal Y89_4197 PF03477 ATP cone domain Y89_4197 PF00317 Ribonucleotide reductase, all-alpha domain Y89_4197 PF02867 Ribonucleotide reductase, barrel domain Y89_4198 PF00268 Ribonucleotide reductase, small chain Y89_4201 PF01320 Colicin immunity protein / pyocin immunity protein Y89_4202 PF06958 S-type Pyocin Y89_4204 PF09101 Exotoxin A binding Y89_4204 PF09009 Exotoxin A catalytic Y89_4204 PF09102 Exotoxin A, targeting Y89_4205 PF13520 Amino acid permease Y89_4206 PF00465 Iron-containing alcohol dehydrogenase Y89_4207 PF03466 LysR substrate binding domain Y89_4207 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4210 PF00392 Bacterial regulatory proteins, gntR family Y89_4210 PF07702 UTRA domain Y89_4211 PF03466 LysR substrate binding domain Y89_4211 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4212 PF05899 Protein of unknown function (DUF861) Y89_4212 PF07883 Cupin domain Y89_4215 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_4215 PF14765 Polyketide synthase dehydratase Y89_4215 PF00550 Phosphopantetheine attachment site Y89_4215 PF08659 KR domain Y89_4215 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_4215 PF16197 Ketoacyl-synthetase C-terminal extension Y89_4215 PF08240 Alcohol dehydrogenase GroES-like domain Y89_4215 PF00698 Acyl transferase domain Y89_4216 PF00196 Bacterial regulatory proteins, luxR family Y89_4216 PF03472 Autoinducer binding domain Y89_4217 PF01965 DJ-1/PfpI family Y89_4221 PF07690 Major Facilitator Superfamily Y89_4223 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_4224 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4224 PF03466 LysR substrate binding domain Y89_4225 PF00248 Aldo/keto reductase family Y89_4227 PF02146 Sir2 family Y89_4228 PF01966 HD domain Y89_4228 PF13286 Phosphohydrolase-associated domain Y89_4230 PF01327 Polypeptide deformylase Y89_4231 PF13689 YfiR/HmsC-like Y89_4232 PF17152 Periplasmic sensor domain Y89_4232 PF00990 Diguanylate cyclase, GGDEF domain Y89_4233 PF00691 OmpA family Y89_4236 PF17783 CvfB-like winged helix domain Y89_4236 PF13509 S1 domain Y89_4239 PF00664 ABC transporter transmembrane region Y89_4239 PF00005 ABC transporter Y89_4241 PF09905 DNA-binding protein VF530 Y89_4242 PF07995 Glucose / Sorbosone dehydrogenase Y89_4245 PF02311 AraC-like ligand binding domain Y89_4245 PF12833 Helix-turn-helix domain Y89_4246 PF07690 Major Facilitator Superfamily Y89_4247 PF17151 Periplasmic sensor domain Y89_4247 PF00990 Diguanylate cyclase, GGDEF domain Y89_4249 PF02050 Flagellar FliJ protein Y89_4250 PF18269 T3SS EscN ATPase C-terminal domain Y89_4250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y89_4252 PF01706 FliG C-terminal domain Y89_4252 PF14842 FliG N-terminal domain Y89_4252 PF14841 FliG middle domain Y89_4253 PF01514 Secretory protein of YscJ/FliF family Y89_4253 PF08345 Flagellar M-ring protein C-terminal Y89_4254 PF02049 Flagellar hook-basal body complex protein FliE Y89_4255 PF00072 Response regulator receiver domain Y89_4255 PF00158 Sigma-54 interaction domain Y89_4255 PF02954 Bacterial regulatory protein, Fis family Y89_4256 PF00989 PAS fold Y89_4256 PF00512 His Kinase A (phospho-acceptor) domain Y89_4256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4257 PF00158 Sigma-54 interaction domain Y89_4257 PF02954 Bacterial regulatory protein, Fis family Y89_4257 PF00072 Response regulator receiver domain Y89_4259 PF02561 Flagellar protein FliS Y89_4260 PF07195 Flagellar hook-associated protein 2 C-terminus Y89_4260 PF07196 Flagellin hook IN motif Y89_4260 PF02465 Flagellar hook-associated protein 2 N-terminus Y89_4261 PF03646 FlaG protein Y89_4262 PF07196 Flagellin hook IN motif Y89_4262 PF00700 Bacterial flagellin C-terminal helical region Y89_4262 PF00669 Bacterial flagellin N-terminal helical region Y89_4263 PF00535 Glycosyl transferase family 2 Y89_4263 PF00534 Glycosyl transferases group 1 Y89_4264 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Y89_4267 PF00669 Bacterial flagellin N-terminal helical region Y89_4268 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y89_4268 PF00460 Flagella basal body rod protein Y89_4269 PF10135 Rod binding protein Y89_4269 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Y89_4270 PF02119 Flagellar P-ring protein Y89_4271 PF02107 Flagellar L-ring protein Y89_4272 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y89_4272 PF00460 Flagella basal body rod protein Y89_4273 PF00460 Flagella basal body rod protein Y89_4273 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y89_4274 PF07559 Flagellar basal body protein FlaE Y89_4274 PF00460 Flagella basal body rod protein Y89_4274 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y89_4275 PF03963 Flagellar hook capping protein - N-terminal region Y89_4275 PF13860 FlgD Ig-like domain Y89_4275 PF13861 FlgD Tudor-like domain Y89_4276 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y89_4276 PF00460 Flagella basal body rod protein Y89_4277 PF00460 Flagella basal body rod protein Y89_4280 PF13458 Periplasmic binding protein Y89_4281 PF02653 Branched-chain amino acid transport system / permease component Y89_4282 PF11862 Domain of unknown function (DUF3382) Y89_4282 PF02653 Branched-chain amino acid transport system / permease component Y89_4283 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y89_4283 PF00005 ABC transporter Y89_4284 PF00005 ABC transporter Y89_4286 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4286 PF00183 Hsp90 protein Y89_4287 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4287 PF03466 LysR substrate binding domain Y89_4289 PF04343 Protein of unknown function, DUF488 Y89_4293 PF00291 Pyridoxal-phosphate dependent enzyme Y89_4294 PF00892 EamA-like transporter family Y89_4296 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Y89_4298 PF00361 Proton-conducting membrane transporter Y89_4299 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Y89_4300 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Y89_4300 PF00361 Proton-conducting membrane transporter Y89_4300 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Y89_4300 PF13244 Domain of unknown function (DUF4040) Y89_4301 PF05433 Glycine zipper 2TM domain Y89_4303 PF02595 Glycerate kinase family Y89_4304 PF02447 GntP family permease Y89_4305 PF05651 Putative sugar diacid recognition Y89_4305 PF17853 GGDEF-like domain Y89_4305 PF13556 PucR C-terminal helix-turn-helix domain Y89_4306 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Y89_4306 PF01243 Pyridoxamine 5'-phosphate oxidase Y89_4307 PF00223 Photosystem I psaA/psaB protein Y89_4307 PF00691 OmpA family Y89_4308 PF00144 Beta-lactamase Y89_4309 PF17992 Agarase CBM like domain Y89_4309 PF02449 Beta-galactosidase Y89_4310 PF13307 Helicase C-terminal domain Y89_4310 PF06733 DEAD_2 Y89_4314 PF00691 OmpA family Y89_4314 PF05736 OprF membrane domain Y89_4316 PF02810 SEC-C motif Y89_4318 PF03458 UPF0126 domain Y89_4322 PF02798 Glutathione S-transferase, N-terminal domain Y89_4322 PF00043 Glutathione S-transferase, C-terminal domain Y89_4323 PF01804 Penicillin amidase Y89_4324 PF02646 RmuC family Y89_4327 PF01266 FAD dependent oxidoreductase Y89_4328 PF00171 Aldehyde dehydrogenase family Y89_4330 PF03573 outer membrane porin, OprD family Y89_4331 PF03060 Nitronate monooxygenase Y89_4332 PF00106 short chain dehydrogenase Y89_4333 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4333 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_4333 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4334 PF00378 Enoyl-CoA hydratase/isomerase Y89_4335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4335 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_4335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4337 PF07690 Major Facilitator Superfamily Y89_4338 PF13452 N-terminal half of MaoC dehydratase Y89_4339 PF00583 Acetyltransferase (GNAT) family Y89_4339 PF13380 CoA binding domain Y89_4339 PF13607 Succinyl-CoA ligase like flavodoxin domain Y89_4343 PF00535 Glycosyl transferase family 2 Y89_4344 PF01259 SAICAR synthetase Y89_4345 PF10996 Beta-Casp domain Y89_4345 PF00753 Metallo-beta-lactamase superfamily Y89_4345 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Y89_4346 PF06804 NlpB/DapX lipoprotein Y89_4347 PF00701 Dihydrodipicolinate synthetase family Y89_4349 PF00578 AhpC/TSA family Y89_4350 PF01594 AI-2E family transporter Y89_4351 PF01206 Sulfurtransferase TusA Y89_4352 PF01435 Peptidase family M48 Y89_4353 PF02445 Quinolinate synthetase A protein Y89_4354 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4354 PF03466 LysR substrate binding domain Y89_4355 PF00117 Glutamine amidotransferase class-I Y89_4356 PF04715 Anthranilate synthase component I, N terminal region Y89_4356 PF00425 chorismate binding enzyme Y89_4357 PF00753 Metallo-beta-lactamase superfamily Y89_4358 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y89_4358 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y89_4359 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y89_4359 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y89_4361 PF13193 AMP-binding enzyme C-terminal domain Y89_4361 PF00501 AMP-binding enzyme Y89_4362 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y89_4362 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Y89_4363 PF00577 Outer membrane usher protein Y89_4363 PF13953 PapC C-terminal domain Y89_4363 PF13954 PapC N-terminal domain Y89_4364 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y89_4364 PF02753 Pili assembly chaperone PapD, C-terminal domain Y89_4365 PF00419 Fimbrial protein Y89_4370 PF13276 HTH-like domain Y89_4370 PF13683 Integrase core domain Y89_4371 PF01527 Transposase Y89_4372 PF06958 S-type Pyocin Y89_4373 PF01527 Transposase Y89_4377 PF01527 Transposase Y89_4378 PF00665 Integrase core domain Y89_4379 PF06508 Queuosine biosynthesis protein QueC Y89_4380 PF04055 Radical SAM superfamily Y89_4381 PF13525 Outer membrane lipoprotein Y89_4381 PF16331 TolA binding protein trimerisation Y89_4382 PF00691 OmpA family Y89_4383 PF07676 WD40-like Beta Propeller Repeat Y89_4383 PF04052 TolB amino-terminal domain Y89_4385 PF02472 Biopolymer transport protein ExbD/TolR Y89_4386 PF01618 MotA/TolQ/ExbB proton channel family Y89_4387 PF03061 Thioesterase superfamily Y89_4388 PF17864 RuvB AAA lid domain Y89_4388 PF05491 RuvB C-terminal winged helix domain Y89_4388 PF05496 Holliday junction DNA helicase RuvB P-loop domain Y89_4389 PF01330 RuvA N terminal domain Y89_4389 PF07499 RuvA, C-terminal domain Y89_4390 PF02075 Crossover junction endodeoxyribonuclease RuvC Y89_4391 PF01709 Transcriptional regulator Y89_4392 PF00152 tRNA synthetases class II (D, K and N) Y89_4392 PF02938 GAD domain Y89_4392 PF01336 OB-fold nucleic acid binding domain Y89_4393 PF00210 Ferritin-like domain Y89_4394 PF00313 'Cold-shock' DNA-binding domain Y89_4395 PF04102 SlyX Y89_4400 PF04073 Aminoacyl-tRNA editing domain Y89_4400 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y89_4400 PF03129 Anticodon binding domain Y89_4402 PF00708 Acylphosphatase Y89_4403 PF00085 Thioredoxin Y89_4406 PF03631 Virulence factor BrkB Y89_4407 PF03960 ArsC family Y89_4408 PF03358 NADPH-dependent FMN reductase Y89_4411 PF00308 Bacterial dnaA protein Y89_4413 PF02769 AIR synthase related protein, C-terminal domain Y89_4413 PF00586 AIR synthase related protein, N-terminal domain Y89_4414 PF00551 Formyl transferase Y89_4422 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) Y89_4424 PF03819 MazG nucleotide pyrophosphohydrolase domain Y89_4425 PF04607 Region found in RelA / SpoT proteins Y89_4425 PF02824 TGS domain Y89_4425 PF13291 ACT domain Y89_4426 PF05958 tRNA (Uracil-5-)-methyltransferase Y89_4427 PF00291 Pyridoxal-phosphate dependent enzyme Y89_4428 PF00593 TonB dependent receptor Y89_4428 PF07715 TonB-dependent Receptor Plug Domain Y89_4429 PF00512 His Kinase A (phospho-acceptor) domain Y89_4429 PF16750 Sensor domain of 2-component histidine kinase Y89_4429 PF00672 HAMP domain Y89_4429 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4430 PF00486 Transcriptional regulatory protein, C terminal Y89_4430 PF00072 Response regulator receiver domain Y89_4431 PF00072 Response regulator receiver domain Y89_4431 PF00672 HAMP domain Y89_4431 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4431 PF00512 His Kinase A (phospho-acceptor) domain Y89_4431 PF01627 Hpt domain Y89_4431 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y89_4432 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_4432 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_4435 PF00884 Sulfatase Y89_4435 PF11893 Domain of unknown function (DUF3413) Y89_4436 PF00817 impB/mucB/samB family Y89_4436 PF11798 IMS family HHH motif Y89_4436 PF11799 impB/mucB/samB family C-terminal domain Y89_4439 PF03706 Lysylphosphatidylglycerol synthase TM region Y89_4439 PF09924 Uncharacterised conserved protein (DUF2156) Y89_4441 PF01292 Prokaryotic cytochrome b561 Y89_4442 PF02705 K+ potassium transporter Y89_4443 PF00919 Uncharacterized protein family UPF0004 Y89_4443 PF18693 TRAM domain Y89_4443 PF04055 Radical SAM superfamily Y89_4444 PF07308 Protein of unknown function (DUF1456) Y89_4446 PF01769 Divalent cation transporter Y89_4446 PF00571 CBS domain Y89_4446 PF03448 MgtE intracellular N domain Y89_4453 PF01381 Helix-turn-helix Y89_4453 PF00717 Peptidase S24-like Y89_4454 PF02599 Global regulator protein family Y89_4455 PF01842 ACT domain Y89_4455 PF13840 ACT domain Y89_4455 PF00696 Amino acid kinase family Y89_4456 PF02272 DHHA1 domain Y89_4456 PF01411 tRNA synthetases class II (A) Y89_4456 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Y89_4457 PF01212 Beta-eliminating lyase Y89_4458 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Y89_4460 PF04996 Succinylarginine dihydrolase Y89_4461 PF00171 Aldehyde dehydrogenase family Y89_4462 PF04958 Arginine N-succinyltransferase beta subunit Y89_4463 PF04958 Arginine N-succinyltransferase beta subunit Y89_4464 PF00202 Aminotransferase class-III Y89_4466 PF12833 Helix-turn-helix domain Y89_4467 PF00005 ABC transporter Y89_4469 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4470 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4471 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_4472 PF13193 AMP-binding enzyme C-terminal domain Y89_4472 PF16177 Acetyl-coenzyme A synthetase N-terminus Y89_4472 PF00501 AMP-binding enzyme Y89_4473 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Y89_4474 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Y89_4475 PF03480 Bacterial extracellular solute-binding protein, family 7 Y89_4476 PF03328 HpcH/HpaI aldolase/citrate lyase family Y89_4477 PF02515 CoA-transferase family III Y89_4478 PF03972 MmgE/PrpD family Y89_4479 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_4480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4480 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_4482 PF03466 LysR substrate binding domain Y89_4482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4483 PF03466 LysR substrate binding domain Y89_4483 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4484 PF04632 Fusaric acid resistance protein family Y89_4486 PF00158 Sigma-54 interaction domain Y89_4486 PF18024 Helix-turn-helix domain Y89_4487 PF00351 Biopterin-dependent aromatic amino acid hydroxylase Y89_4488 PF01329 Pterin 4 alpha carbinolamine dehydratase Y89_4489 PF00155 Aminotransferase class I and II Y89_4490 PF00768 D-alanyl-D-alanine carboxypeptidase Y89_4491 PF00472 RF-1 domain Y89_4492 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme Y89_4493 PF00324 Amino acid permease Y89_4494 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_4497 PF16197 Ketoacyl-synthetase C-terminal extension Y89_4497 PF08659 KR domain Y89_4497 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_4497 PF00550 Phosphopantetheine attachment site Y89_4497 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_4497 PF00698 Acyl transferase domain Y89_4497 PF14765 Polyketide synthase dehydratase Y89_4497 PF08240 Alcohol dehydrogenase GroES-like domain Y89_4497 PF00107 Zinc-binding dehydrogenase Y89_4499 PF00990 Diguanylate cyclase, GGDEF domain Y89_4499 PF08448 PAS fold Y89_4499 PF00563 EAL domain Y89_4500 PF00005 ABC transporter Y89_4500 PF00664 ABC transporter transmembrane region Y89_4503 PF01722 BolA-like protein Y89_4506 PF10415 Fumarase C C-terminus Y89_4506 PF00206 Lyase Y89_4508 PF18416 N-acetylglucosamine binding protein domain 2 Y89_4508 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading Y89_4509 PF00291 Pyridoxal-phosphate dependent enzyme Y89_4511 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_4512 PF00578 AhpC/TSA family Y89_4512 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y89_4513 PF00563 EAL domain Y89_4513 PF03707 Bacterial signalling protein N terminal repeat Y89_4513 PF00990 Diguanylate cyclase, GGDEF domain Y89_4515 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal Y89_4515 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal Y89_4516 PF04185 Phosphoesterase family Y89_4516 PF05506 Domain of unknown function (DUF756) Y89_4518 PF00534 Glycosyl transferases group 1 Y89_4518 PF13439 Glycosyltransferase Family 4 Y89_4519 PF02645 Uncharacterised protein, DegV family COG1307 Y89_4520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_4520 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_4521 PF16925 Tetracyclin repressor-like, C-terminal domain Y89_4521 PF00440 Bacterial regulatory proteins, tetR family Y89_4522 PF00255 Glutathione peroxidase Y89_4523 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y89_4524 PF00871 Acetokinase family Y89_4525 PF01515 Phosphate acetyl/butaryl transferase Y89_4525 PF07085 DRTGG domain Y89_4526 PF01553 Acyltransferase Y89_4527 PF00691 OmpA family Y89_4527 PF13488 Glycine zipper Y89_4528 PF00753 Metallo-beta-lactamase superfamily Y89_4529 PF12833 Helix-turn-helix domain Y89_4529 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y89_4531 PF00561 alpha/beta hydrolase fold Y89_4532 PF08361 MAATS-type transcriptional repressor, C-terminal region Y89_4532 PF00440 Bacterial regulatory proteins, tetR family Y89_4535 PF00589 Phage integrase family Y89_4535 PF02899 Phage integrase, N-terminal SAM-like domain Y89_4541 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4541 PF03466 LysR substrate binding domain Y89_4542 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4542 PF03466 LysR substrate binding domain Y89_4544 PF00266 Aminotransferase class-V Y89_4547 PF13419 Haloacid dehalogenase-like hydrolase Y89_4548 PF01566 Natural resistance-associated macrophage protein Y89_4550 PF01510 N-acetylmuramoyl-L-alanine amidase Y89_4553 PF00248 Aldo/keto reductase family Y89_4558 PF00271 Helicase conserved C-terminal domain Y89_4558 PF12419 SNF2 Helicase protein Y89_4558 PF00176 SNF2 family N-terminal domain Y89_4559 PF08241 Methyltransferase domain Y89_4560 PF00392 Bacterial regulatory proteins, gntR family Y89_4560 PF07729 FCD domain Y89_4562 PF00285 Citrate synthase, C-terminal domain Y89_4563 PF00330 Aconitase family (aconitate hydratase) Y89_4563 PF00694 Aconitase C-terminal domain Y89_4564 PF04303 PrpF protein Y89_4565 PF03972 MmgE/PrpD family Y89_4568 PF00324 Amino acid permease Y89_4572 PF00893 Small Multidrug Resistance protein Y89_4573 PF02525 Flavodoxin-like fold Y89_4574 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4574 PF03466 LysR substrate binding domain Y89_4575 PF00474 Sodium:solute symporter family Y89_4576 PF00171 Aldehyde dehydrogenase family Y89_4576 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Y89_4576 PF14850 DNA-binding domain of Proline dehydrogenase Y89_4576 PF01619 Proline dehydrogenase Y89_4577 PF07715 TonB-dependent Receptor Plug Domain Y89_4577 PF00593 TonB dependent receptor Y89_4578 PF12833 Helix-turn-helix domain Y89_4579 PF05362 Lon protease (S16) C-terminal proteolytic domain Y89_4579 PF00004 ATPase family associated with various cellular activities (AAA) Y89_4579 PF02190 ATP-dependent protease La (LON) substrate-binding domain Y89_4583 PF13649 Methyltransferase domain Y89_4584 PF08003 Protein of unknown function (DUF1698) Y89_4585 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Y89_4586 PF02565 Recombination protein O C terminal Y89_4586 PF11967 Recombination protein O N terminal Y89_4587 PF07650 KH domain Y89_4587 PF01926 50S ribosome-binding GTPase Y89_4588 PF00035 Double-stranded RNA binding motif Y89_4588 PF14622 Ribonuclease-III-like Y89_4590 PF10502 Signal peptidase, peptidase S26 Y89_4591 PF03144 Elongation factor Tu domain 2 Y89_4591 PF06421 GTP-binding protein LepA C-terminus Y89_4591 PF00679 Elongation factor G C-terminus Y89_4591 PF00009 Elongation factor Tu GTP binding domain Y89_4592 PF13180 PDZ domain Y89_4594 PF17188 MucB/RseB C-terminal domain Y89_4594 PF03888 MucB/RseB N-terminal domain Y89_4595 PF03873 Anti sigma-E protein RseA, C-terminal domain Y89_4595 PF03872 Anti sigma-E protein RseA, N-terminal domain Y89_4596 PF04542 Sigma-70 region 2 Y89_4596 PF08281 Sigma-70, region 4 Y89_4597 PF02910 Fumarate reductase flavoprotein C-term Y89_4597 PF00890 FAD binding domain Y89_4599 PF03937 Flavinator of succinate dehydrogenase Y89_4600 PF01571 Aminomethyltransferase folate-binding domain Y89_4602 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4602 PF00512 His Kinase A (phospho-acceptor) domain Y89_4603 PF00072 Response regulator receiver domain Y89_4603 PF00486 Transcriptional regulatory protein, C terminal Y89_4604 PF03573 outer membrane porin, OprD family Y89_4607 PF01970 Tripartite tricarboxylate transporter TctA family Y89_4608 PF05145 Transition state regulatory protein AbrB Y89_4609 PF03167 Uracil DNA glycosylase superfamily Y89_4610 PF04294 VanW like protein Y89_4611 PF02311 AraC-like ligand binding domain Y89_4611 PF12833 Helix-turn-helix domain Y89_4612 PF00171 Aldehyde dehydrogenase family Y89_4613 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_4613 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4613 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4614 PF00378 Enoyl-CoA hydratase/isomerase Y89_4616 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y89_4616 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y89_4618 PF13460 NAD(P)H-binding Y89_4619 PF14864 Alkyl sulfatase C-terminal Y89_4619 PF14863 Alkyl sulfatase dimerisation Y89_4619 PF00753 Metallo-beta-lactamase superfamily Y89_4620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4620 PF03466 LysR substrate binding domain Y89_4628 PF00849 RNA pseudouridylate synthase Y89_4628 PF01479 S4 domain Y89_4631 PF00561 alpha/beta hydrolase fold Y89_4632 PF14659 Phage integrase, N-terminal SAM-like domain Y89_4632 PF13356 Arm DNA-binding domain Y89_4632 PF00589 Phage integrase family Y89_4635 PF13614 AAA domain Y89_4642 PF00436 Single-strand binding protein family Y89_4643 PF01751 Toprim domain Y89_4643 PF01131 DNA topoisomerase Y89_4675 PF04002 RadC-like JAB domain Y89_4682 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system Y89_4686 PF01526 Tn3 transposase DDE domain Y89_4686 PF13700 Domain of unknown function (DUF4158) Y89_4687 PF01526 Tn3 transposase DDE domain Y89_4687 PF13700 Domain of unknown function (DUF4158) Y89_4688 PF00239 Resolvase, N terminal domain Y89_4688 PF02796 Helix-turn-helix domain of resolvase Y89_4690 PF00589 Phage integrase family Y89_4690 PF13495 Phage integrase, N-terminal SAM-like domain Y89_4691 PF10706 Aminoglycoside-2''-adenylyltransferase Y89_4692 PF00905 Penicillin binding protein transpeptidase domain Y89_4694 PF00239 Resolvase, N terminal domain Y89_4694 PF02796 Helix-turn-helix domain of resolvase Y89_4695 PF01526 Tn3 transposase DDE domain Y89_4695 PF13700 Domain of unknown function (DUF4158) Y89_4697 PF00118 TCP-1/cpn60 chaperonin family Y89_4698 PF01636 Phosphotransferase enzyme family Y89_4700 PF13495 Phage integrase, N-terminal SAM-like domain Y89_4700 PF00589 Phage integrase family Y89_4701 PF00809 Pterin binding enzyme Y89_4703 PF07690 Major Facilitator Superfamily Y89_4704 PF13610 DDE domain Y89_4705 PF00376 MerR family regulatory protein Y89_4705 PF09278 MerR, DNA binding Y89_4706 PF02411 MerT mercuric transport protein Y89_4707 PF00403 Heavy-metal-associated domain Y89_4708 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y89_4708 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_4708 PF00403 Heavy-metal-associated domain Y89_4709 PF13411 MerR HTH family regulatory protein Y89_4710 PF13610 DDE domain Y89_4711 PF01555 DNA methylase Y89_4711 PF18273 Type III R-M EcoP15I C-terminal domain Y89_4714 PF00271 Helicase conserved C-terminal domain Y89_4714 PF00176 SNF2 family N-terminal domain Y89_4716 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4716 PF03466 LysR substrate binding domain Y89_4717 PF00004 ATPase family associated with various cellular activities (AAA) Y89_4721 PF09857 Putative toxin of bacterial toxin-antitoxin pair Y89_4723 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_4725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4725 PF03466 LysR substrate binding domain Y89_4726 PF00563 EAL domain Y89_4727 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_4728 PF00535 Glycosyl transferase family 2 Y89_4729 PF01425 Amidase Y89_4730 PF07690 Major Facilitator Superfamily Y89_4733 PF03466 LysR substrate binding domain Y89_4733 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4735 PF00639 PPIC-type PPIASE domain Y89_4740 PF02472 Biopolymer transport protein ExbD/TolR Y89_4741 PF01618 MotA/TolQ/ExbB proton channel family Y89_4742 PF17287 POTRA domain Y89_4742 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y89_4742 PF08479 POTRA domain, ShlB-type Y89_4745 PF12849 PBP superfamily domain Y89_4746 PF00482 Type II secretion system (T2SS), protein F Y89_4747 PF00437 Type II/IV secretion system protein Y89_4748 PF03958 Bacterial type II/III secretion system short domain Y89_4748 PF00263 Bacterial type II and III secretion system protein Y89_4751 PF03934 Type II secretion system (T2SS), protein K Y89_4752 PF08334 Type II secretion system (T2SS), protein G Y89_4752 PF07963 Prokaryotic N-terminal methylation motif Y89_4753 PF07963 Prokaryotic N-terminal methylation motif Y89_4753 PF02501 Type II secretion system (T2SS), protein I Y89_4755 PF12019 Type II transport protein GspH Y89_4755 PF07963 Prokaryotic N-terminal methylation motif Y89_4756 PF11612 Type II secretion system (T2SS), protein J Y89_4756 PF07963 Prokaryotic N-terminal methylation motif Y89_4761 PF01126 Heme oxygenase Y89_4764 PF07733 Bacterial DNA polymerase III alpha NTPase domain Y89_4764 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Y89_4764 PF14579 Helix-hairpin-helix motif Y89_4764 PF02811 PHP domain Y89_4765 PF12320 Type 5 capsule protein repressor C-terminal domain Y89_4765 PF00149 Calcineurin-like phosphoesterase Y89_4767 PF13538 UvrD-like helicase C-terminal domain Y89_4768 PF13361 UvrD-like helicase C-terminal domain Y89_4768 PF00580 UvrD/REP helicase N-terminal domain Y89_4768 PF12705 PD-(D/E)XK nuclease superfamily Y89_4769 PF17946 RecC C-terminal domain Y89_4771 PF00892 EamA-like transporter family Y89_4774 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_4774 PF00672 HAMP domain Y89_4774 PF02743 Cache domain Y89_4776 PF01384 Phosphate transporter family Y89_4777 PF13188 PAS domain Y89_4777 PF08448 PAS fold Y89_4777 PF00512 His Kinase A (phospho-acceptor) domain Y89_4777 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4777 PF00072 Response regulator receiver domain Y89_4780 PF00196 Bacterial regulatory proteins, luxR family Y89_4780 PF00072 Response regulator receiver domain Y89_4786 PF00437 Type II/IV secretion system protein Y89_4788 PF13629 Pilus formation protein N terminal region Y89_4788 PF00263 Bacterial type II and III secretion system protein Y89_4788 PF04972 BON domain Y89_4791 PF02743 Cache domain Y89_4791 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_4791 PF00672 HAMP domain Y89_4792 PF05872 Bacterial protein of unknown function (DUF853) Y89_4793 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_4793 PF00672 HAMP domain Y89_4793 PF02743 Cache domain Y89_4794 PF00672 HAMP domain Y89_4794 PF02743 Cache domain Y89_4794 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_4795 PF00534 Glycosyl transferases group 1 Y89_4795 PF13439 Glycosyltransferase Family 4 Y89_4799 PF00551 Formyl transferase Y89_4799 PF01842 ACT domain Y89_4801 PF00929 Exonuclease Y89_4801 PF08411 Exonuclease C-terminal Y89_4807 PF17863 AAA lid domain Y89_4807 PF07726 ATPase family associated with various cellular activities (AAA) Y89_4813 PF00582 Universal stress protein family Y89_4814 PF00224 Pyruvate kinase, barrel domain Y89_4814 PF02887 Pyruvate kinase, alpha/beta domain Y89_4815 PF00378 Enoyl-CoA hydratase/isomerase Y89_4816 PF00970 Oxidoreductase FAD-binding domain Y89_4816 PF00175 Oxidoreductase NAD-binding domain Y89_4817 PF00990 Diguanylate cyclase, GGDEF domain Y89_4817 PF08448 PAS fold Y89_4818 PF05681 Fumarate hydratase (Fumerase) Y89_4818 PF05683 Fumarase C-terminus Y89_4819 PF01566 Natural resistance-associated macrophage protein Y89_4821 PF01965 DJ-1/PfpI family Y89_4824 PF13091 PLD-like domain Y89_4824 PF13396 Phospholipase_D-nuclease N-terminal Y89_4827 PF01425 Amidase Y89_4828 PF07690 Major Facilitator Superfamily Y89_4829 PF07687 Peptidase dimerisation domain Y89_4829 PF01546 Peptidase family M20/M25/M40 Y89_4832 PF00144 Beta-lactamase Y89_4832 PF11954 Domain of unknown function (DUF3471) Y89_4833 PF01613 Flavin reductase like domain Y89_4833 PF00258 Flavodoxin Y89_4837 PF00582 Universal stress protein family Y89_4840 PF07690 Major Facilitator Superfamily Y89_4841 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_4842 PF09012 FeoC like transcriptional regulator Y89_4843 PF02421 Ferrous iron transport protein B Y89_4843 PF07664 Ferrous iron transport protein B C terminus Y89_4843 PF07670 Nucleoside recognition Y89_4843 PF17910 FeoB cytosolic helical domain Y89_4844 PF04023 FeoA domain Y89_4847 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family Y89_4849 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4849 PF03466 LysR substrate binding domain Y89_4851 PF01810 LysE type translocator Y89_4852 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Y89_4852 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Y89_4856 PF04011 LemA family Y89_4861 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_4862 PF00873 AcrB/AcrD/AcrF family Y89_4863 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Y89_4863 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Y89_4868 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4868 PF00672 HAMP domain Y89_4868 PF00512 His Kinase A (phospho-acceptor) domain Y89_4869 PF00486 Transcriptional regulatory protein, C terminal Y89_4869 PF00072 Response regulator receiver domain Y89_4872 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Y89_4874 PF00118 TCP-1/cpn60 chaperonin family Y89_4875 PF00166 Chaperonin 10 Kd subunit Y89_4876 PF04186 FxsA cytoplasmic membrane protein Y89_4882 PF07690 Major Facilitator Superfamily Y89_4883 PF05552 Conserved TM helix Y89_4883 PF00924 Mechanosensitive ion channel Y89_4884 PF04461 Protein of unknown function (DUF520) Y89_4886 PF08546 Ketopantoate reductase PanE/ApbA C terminal Y89_4886 PF02558 Ketopantoate reductase PanE/ApbA Y89_4887 PF00512 His Kinase A (phospho-acceptor) domain Y89_4887 PF08448 PAS fold Y89_4887 PF00072 Response regulator receiver domain Y89_4887 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4887 PF13188 PAS domain Y89_4888 PF01923 Cobalamin adenosyltransferase Y89_4889 PF00293 NUDIX domain Y89_4890 PF00043 Glutathione S-transferase, C-terminal domain Y89_4890 PF13417 Glutathione S-transferase, N-terminal domain Y89_4891 PF01960 ArgJ family Y89_4892 PF07517 SecA DEAD-like domain Y89_4892 PF01043 SecA preprotein cross-linking domain Y89_4892 PF07516 SecA Wing and Scaffold domain Y89_4892 PF02810 SEC-C motif Y89_4893 PF01464 Transglycosylase SLT domain Y89_4893 PF01551 Peptidase family M23 Y89_4893 PF10145 Phage-related minor tail protein Y89_4895 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Y89_4896 PF12327 FtsZ family, C-terminal domain Y89_4896 PF00091 Tubulin/FtsZ family, GTPase domain Y89_4897 PF02491 SHS2 domain inserted in FTSA Y89_4898 PF08478 POTRA domain, FtsQ-type Y89_4898 PF03799 Cell division protein FtsQ Y89_4899 PF07478 D-ala D-ala ligase C-terminus Y89_4899 PF01820 D-ala D-ala ligase N-terminus Y89_4900 PF08245 Mur ligase middle domain Y89_4900 PF02875 Mur ligase family, glutamate ligase domain Y89_4900 PF01225 Mur ligase family, catalytic domain Y89_4901 PF03033 Glycosyltransferase family 28 N-terminal domain Y89_4901 PF04101 Glycosyltransferase family 28 C-terminal domain Y89_4902 PF01098 Cell cycle protein Y89_4903 PF08245 Mur ligase middle domain Y89_4903 PF02875 Mur ligase family, glutamate ligase domain Y89_4904 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Y89_4904 PF00953 Glycosyl transferase family 4 Y89_4905 PF02875 Mur ligase family, glutamate ligase domain Y89_4905 PF01225 Mur ligase family, catalytic domain Y89_4905 PF08245 Mur ligase middle domain Y89_4906 PF01225 Mur ligase family, catalytic domain Y89_4906 PF02875 Mur ligase family, glutamate ligase domain Y89_4906 PF08245 Mur ligase middle domain Y89_4907 PF00905 Penicillin binding protein transpeptidase domain Y89_4907 PF03717 Penicillin-binding Protein dimerisation domain Y89_4908 PF04999 Cell division protein FtsL Y89_4909 PF01795 MraW methylase family Y89_4910 PF02381 MraZ protein, putative antitoxin-like Y89_4911 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_4912 PF04348 LppC putative lipoprotein Y89_4914 PF13580 SIS domain Y89_4915 PF04972 BON domain Y89_4916 PF04386 Stringent starvation protein B Y89_4917 PF02798 Glutathione S-transferase, N-terminal domain Y89_4917 PF00043 Glutathione S-transferase, C-terminal domain Y89_4918 PF02167 Cytochrome C1 family Y89_4919 PF00032 Cytochrome b(C-terminal)/b6/petD Y89_4919 PF00033 Cytochrome b/b6/petB Y89_4920 PF00355 Rieske [2Fe-2S] domain Y89_4920 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Y89_4921 PF00380 Ribosomal protein S9/S16 Y89_4922 PF00572 Ribosomal protein L13 Y89_4923 PF00248 Aldo/keto reductase family Y89_4924 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4924 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4924 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_4927 PF03969 AFG1-like ATPase Y89_4928 PF00579 tRNA synthetases class I (W and Y) Y89_4929 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Y89_4931 PF00009 Elongation factor Tu GTP binding domain Y89_4932 PF01507 Phosphoadenosine phosphosulfate reductase family Y89_4933 PF13406 Transglycosylase SLT domain Y89_4934 PF01784 NIF3 (NGG1p interacting factor 3) Y89_4935 PF13180 PDZ domain Y89_4936 PF00155 Aminotransferase class I and II Y89_4937 PF00815 Histidinol dehydrogenase Y89_4938 PF01634 ATP phosphoribosyltransferase Y89_4939 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Y89_4942 PF05494 MlaC protein Y89_4943 PF02470 MlaD protein Y89_4944 PF02405 Permease MlaE Y89_4945 PF00005 ABC transporter Y89_4947 PF00571 CBS domain Y89_4947 PF01380 SIS domain Y89_4951 PF00005 ABC transporter Y89_4951 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y89_4952 PF00309 Sigma-54 factor, Activator interacting domain (AID) Y89_4952 PF04963 Sigma-54 factor, core binding domain Y89_4952 PF04552 Sigma-54, DNA binding domain Y89_4953 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Y89_4954 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y89_4955 PF03668 P-loop ATPase protein family Y89_4956 PF00381 PTS HPr component phosphorylation site Y89_4957 PF02535 ZIP Zinc transporter Y89_4958 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Y89_4958 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Y89_4960 PF00206 Lyase Y89_4960 PF10415 Fumarase C C-terminus Y89_4962 PF01523 Putative modulator of DNA gyrase Y89_4963 PF04751 Protein of unknown function (DUF615) Y89_4964 PF01523 Putative modulator of DNA gyrase Y89_4965 PF00795 Carbon-nitrogen hydrolase Y89_4967 PF10150 Ribonuclease E/G family Y89_4967 PF00575 S1 RNA binding domain Y89_4968 PF02545 Maf-like protein Y89_4970 PF04085 rod shape-determining protein MreC Y89_4972 PF02686 Glu-tRNAGln amidotransferase C subunit Y89_4973 PF01425 Amidase Y89_4974 PF02637 GatB domain Y89_4974 PF02934 GatB/GatE catalytic domain Y89_4975 PF03330 Lytic transglycolase Y89_4976 PF02627 Carboxymuconolactone decarboxylase family Y89_4977 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) Y89_4978 PF08486 Stage II sporulation protein Y89_4978 PF10062 Predicted secreted protein (DUF2300) Y89_4979 PF07703 Alpha-2-macroglobulin bait region domain Y89_4979 PF01835 MG2 domain Y89_4979 PF00207 Alpha-2-macroglobulin family Y89_4980 PF06672 Protein of unknown function (DUF1175) Y89_4981 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) Y89_4982 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) Y89_4983 PF00072 Response regulator receiver domain Y89_4984 PF00512 His Kinase A (phospho-acceptor) domain Y89_4984 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4986 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y89_4988 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y89_4989 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4990 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4990 PF12911 N-terminal TM domain of oligopeptide transport permease C Y89_4991 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y89_4991 PF00005 ABC transporter Y89_4992 PF00005 ABC transporter Y89_4992 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y89_4993 PF01810 LysE type translocator Y89_4994 PF01037 Lrp/AsnC ligand binding domain Y89_4995 PF02626 Carboxyltransferase domain, subdomain A and B Y89_4997 PF03746 LamB/YcsF family Y89_4999 PF00175 Oxidoreductase NAD-binding domain Y89_4999 PF00258 Flavodoxin Y89_4999 PF00667 FAD binding domain Y89_5000 PF00593 TonB dependent receptor Y89_5000 PF07715 TonB-dependent Receptor Plug Domain Y89_5001 PF18331 PKHD-type hydroxylase C-terminal domain Y89_5001 PF13640 2OG-Fe(II) oxygenase superfamily Y89_5003 PF00884 Sulfatase Y89_5005 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Y89_5005 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Y89_5006 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_5006 PF00672 HAMP domain Y89_5006 PF02743 Cache domain Y89_5008 PF01510 N-acetylmuramoyl-L-alanine amidase Y89_5010 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Y89_5010 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Y89_5011 PF00589 Phage integrase family Y89_5023 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Y89_5032 PF00813 FliP family Y89_5033 PF01313 Bacterial export proteins, family 3 Y89_5034 PF01311 Bacterial export proteins, family 1 Y89_5035 PF01312 FlhB HrpN YscU SpaS Family Y89_5037 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Y89_5037 PF00437 Type II/IV secretion system protein Y89_5038 PF00482 Type II secretion system (T2SS), protein F Y89_5039 PF01478 Type IV leader peptidase family Y89_5039 PF06750 Bacterial Peptidase A24 N-terminal domain Y89_5040 PF01121 Dephospho-CoA kinase Y89_5041 PF03884 DNA gyrase inhibitor YacG Y89_5049 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_5050 PF03969 AFG1-like ATPase Y89_5051 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y89_5051 PF08479 POTRA domain, ShlB-type Y89_5052 PF05860 haemagglutination activity domain Y89_5053 PF13614 AAA domain Y89_5060 PF00772 DnaB-like helicase N terminal domain Y89_5060 PF03796 DnaB-like helicase C terminal domain Y89_5068 PF04245 37-kD nucleoid-associated bacterial protein Y89_5079 PF01396 Topoisomerase DNA binding C4 zinc finger Y89_5079 PF01131 DNA topoisomerase Y89_5079 PF01751 Toprim domain Y89_5082 PF00271 Helicase conserved C-terminal domain Y89_5082 PF00176 SNF2 family N-terminal domain Y89_5083 PF01381 Helix-turn-helix Y89_5088 PF00437 Type II/IV secretion system protein Y89_5091 PF00437 Type II/IV secretion system protein Y89_5116 PF13361 UvrD-like helicase C-terminal domain Y89_5116 PF00580 UvrD/REP helicase N-terminal domain Y89_5116 PF12705 PD-(D/E)XK nuclease superfamily Y89_5138 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Y89_5139 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Y89_5144 PF13007 Transposase C of IS166 homeodomain Y89_5144 PF03050 Transposase IS66 family Y89_5144 PF13005 zinc-finger binding domain of transposase IS66 Y89_5144 PF13817 IS66 C-terminal element Y89_5147 PF00589 Phage integrase family Y89_5148 PF17871 AAA lid domain Y89_5148 PF02861 Clp amino terminal domain, pathogenicity island component Y89_5148 PF00004 ATPase family associated with various cellular activities (AAA) Y89_5148 PF07724 AAA domain (Cdc48 subfamily) Y89_5148 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_5150 PF01479 S4 domain Y89_5150 PF00849 RNA pseudouridylate synthase Y89_5151 PF13525 Outer membrane lipoprotein Y89_5153 PF00512 His Kinase A (phospho-acceptor) domain Y89_5153 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5154 PF00158 Sigma-54 interaction domain Y89_5154 PF00072 Response regulator receiver domain Y89_5154 PF02954 Bacterial regulatory protein, Fis family Y89_5155 PF01266 FAD dependent oxidoreductase Y89_5157 PF07963 Prokaryotic N-terminal methylation motif Y89_5157 PF00114 Pilin (bacterial filament) Y89_5161 PF05567 Neisseria PilC beta-propeller domain Y89_5163 PF00114 Pilin (bacterial filament) Y89_5163 PF07963 Prokaryotic N-terminal methylation motif Y89_5164 PF02401 LytB protein Y89_5165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y89_5166 PF01252 Signal peptidase (SPase) II Y89_5167 PF08264 Anticodon-binding domain of tRNA Y89_5167 PF00133 tRNA synthetases class I (I, L, M and V) Y89_5167 PF06827 Zinc finger found in FPG and IleRS Y89_5168 PF01687 Riboflavin kinase Y89_5168 PF06574 FAD synthetase Y89_5169 PF03023 Lipid II flippase MurJ Y89_5170 PF01649 Ribosomal protein S20 Y89_5171 PF05981 CreA protein Y89_5172 PF00696 Amino acid kinase family Y89_5172 PF01472 PUA domain Y89_5173 PF01018 GTP1/OBG Y89_5173 PF01926 50S ribosome-binding GTPase Y89_5174 PF01016 Ribosomal L27 protein Y89_5175 PF00829 Ribosomal prokaryotic L21 protein Y89_5176 PF00348 Polyprenyl synthetase Y89_5178 PF00034 Cytochrome c Y89_5178 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_5179 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y89_5179 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Y89_5181 PF03350 Uncharacterized protein family, UPF0114 Y89_5183 PF13654 AAA domain Y89_5183 PF05362 Lon protease (S16) C-terminal proteolytic domain Y89_5188 PF06956 Regulator of RNA terminal phosphate cyclase Y89_5188 PF00158 Sigma-54 interaction domain Y89_5190 PF01139 tRNA-splicing ligase RtcB Y89_5191 PF10127 RNA repair pathway DNA polymerase beta family Y89_5192 PF01137 RNA 3'-terminal phosphate cyclase Y89_5192 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain Y89_5194 PF03150 Di-haem cytochrome c peroxidase Y89_5194 PF00034 Cytochrome c Y89_5195 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Y89_5195 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y89_5200 PF02687 FtsX-like permease family Y89_5200 PF12704 MacB-like periplasmic core domain Y89_5200 PF00005 ABC transporter Y89_5201 PF00005 ABC transporter Y89_5201 PF12704 MacB-like periplasmic core domain Y89_5201 PF02687 FtsX-like permease family Y89_5202 PF12848 ABC transporter Y89_5202 PF00005 ABC transporter Y89_5205 PF02321 Outer membrane efflux protein Y89_5206 PF00873 AcrB/AcrD/AcrF family Y89_5207 PF00529 HlyD membrane-fusion protein of T1SS Y89_5207 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_5209 PF00990 Diguanylate cyclase, GGDEF domain Y89_5209 PF00563 EAL domain Y89_5209 PF03707 Bacterial signalling protein N terminal repeat Y89_5210 PF00464 Serine hydroxymethyltransferase Y89_5212 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y89_5212 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y89_5213 PF04328 Selenoprotein, putative Y89_5214 PF02554 Carbon starvation protein CstA Y89_5214 PF13722 5TM C-terminal transporter carbon starvation CstA Y89_5216 PF07238 PilZ domain Y89_5217 PF18073 Rubredoxin metal binding domain Y89_5221 PF06628 Catalase-related immune-responsive Y89_5221 PF00199 Catalase Y89_5222 PF01741 Large-conductance mechanosensitive channel, MscL Y89_5223 PF00970 Oxidoreductase FAD-binding domain Y89_5223 PF00175 Oxidoreductase NAD-binding domain Y89_5224 PF03480 Bacterial extracellular solute-binding protein, family 7 Y89_5225 PF05175 Methyltransferase small domain Y89_5227 PF13478 XdhC Rossmann domain Y89_5227 PF02625 XdhC and CoxI family Y89_5228 PF00034 Cytochrome c Y89_5228 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_5229 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_5229 PF01799 [2Fe-2S] binding domain Y89_5230 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y89_5233 PF17287 POTRA domain Y89_5233 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y89_5233 PF08479 POTRA domain, ShlB-type Y89_5235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_5235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_5236 PF05175 Methyltransferase small domain Y89_5236 PF08468 Methyltransferase small domain N-terminal Y89_5237 PF00324 Amino acid permease Y89_5238 PF01169 Uncharacterized protein family UPF0016 Y89_5241 PF01435 Peptidase family M48 Y89_5242 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_5242 PF00672 HAMP domain Y89_5243 PF02586 SOS response associated peptidase (SRAP) Y89_5244 PF02308 MgtC family Y89_5251 PF06039 Malate:quinone oxidoreductase (Mqo) Y89_5258 PF00860 Permease family Y89_5266 PF00762 Ferrochelatase Y89_5267 PF08338 Domain of unknown function (DUF1731) Y89_5267 PF01370 NAD dependent epimerase/dehydratase family Y89_5268 PF01593 Flavin containing amine oxidoreductase Y89_5270 PF13411 MerR HTH family regulatory protein Y89_5271 PF03441 FAD binding domain of DNA photolyase Y89_5271 PF00875 DNA photolyase Y89_5272 PF09411 Lipid A 3-O-deacylase (PagL) Y89_5273 PF01177 Asp/Glu/Hydantoin racemase Y89_5274 PF00899 ThiF family Y89_5275 PF05175 Methyltransferase small domain Y89_5275 PF17827 PrmC N-terminal domain Y89_5276 PF03462 PCRF domain Y89_5276 PF00472 RF-1 domain Y89_5277 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Y89_5277 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Y89_5277 PF01488 Shikimate / quinate 5-dehydrogenase Y89_5279 PF03550 Outer membrane lipoprotein LolB Y89_5280 PF08544 GHMP kinases C terminal Y89_5280 PF00288 GHMP kinases N terminal domain Y89_5282 PF14693 Ribosomal protein TL5, C-terminal domain Y89_5282 PF01386 Ribosomal L25p family Y89_5283 PF01195 Peptidyl-tRNA hydrolase Y89_5284 PF06071 Protein of unknown function (DUF933) Y89_5284 PF01926 50S ribosome-binding GTPase Y89_5285 PF01381 Helix-turn-helix Y89_5286 PF07715 TonB-dependent Receptor Plug Domain Y89_5286 PF00593 TonB dependent receptor Y89_5287 PF00484 Carbonic anhydrase Y89_5289 PF00583 Acetyltransferase (GNAT) family Y89_5298 PF01547 Bacterial extracellular solute-binding protein Y89_5299 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5300 PF02470 MlaD protein Y89_5301 PF04403 Paraquat-inducible protein A Y89_5302 PF04403 Paraquat-inducible protein A Y89_5303 PF01794 Ferric reductase like transmembrane component Y89_5304 PF00174 Oxidoreductase molybdopterin binding domain Y89_5305 PF01066 CDP-alcohol phosphatidyltransferase Y89_5306 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Y89_5306 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Y89_5307 PF10369 Small subunit of acetolactate synthase Y89_5308 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_5308 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_5308 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_5310 PF04287 tRNA pseudouridine synthase C Y89_5312 PF00905 Penicillin binding protein transpeptidase domain Y89_5312 PF14814 Bifunctional transglycosylase second domain Y89_5312 PF00912 Transglycosylase Y89_5316 PF00027 Cyclic nucleotide-binding domain Y89_5318 PF00005 ABC transporter Y89_5319 PF01032 FecCD transport family Y89_5320 PF01497 Periplasmic binding protein Y89_5321 PF05171 Haemin-degrading HemS.ChuX domain Y89_5322 PF00593 TonB dependent receptor Y89_5322 PF07715 TonB-dependent Receptor Plug Domain Y89_5327 PF00155 Aminotransferase class I and II Y89_5328 PF02567 Phenazine biosynthesis-like protein Y89_5329 PF04228 Putative neutral zinc metallopeptidase Y89_5331 PF00860 Permease family Y89_5332 PF05958 tRNA (Uracil-5-)-methyltransferase Y89_5333 PF17746 SfsA N-terminal OB domain Y89_5333 PF03749 Sugar fermentation stimulation protein RE domain Y89_5334 PF00155 Aminotransferase class I and II Y89_5335 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y89_5336 PF00749 tRNA synthetases class I (E and Q), catalytic domain Y89_5338 PF00512 His Kinase A (phospho-acceptor) domain Y89_5338 PF00989 PAS fold Y89_5338 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5338 PF08447 PAS fold Y89_5339 PF02954 Bacterial regulatory protein, Fis family Y89_5339 PF00072 Response regulator receiver domain Y89_5339 PF00158 Sigma-54 interaction domain Y89_5340 PF12626 Polymerase A arginine-rich C-terminus Y89_5340 PF01743 Poly A polymerase head domain Y89_5340 PF12627 Probable RNA and SrmB- binding site of polymerase A Y89_5341 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Y89_5342 PF02548 Ketopantoate hydroxymethyltransferase Y89_5343 PF02569 Pantoate-beta-alanine ligase Y89_5344 PF02261 Aspartate decarboxylase Y89_5345 PF00342 Phosphoglucose isomerase Y89_5346 PF16177 Acetyl-coenzyme A synthetase N-terminus Y89_5346 PF13193 AMP-binding enzyme C-terminal domain Y89_5346 PF00501 AMP-binding enzyme Y89_5351 PF05532 CsbD-like Y89_5352 PF04972 BON domain Y89_5353 PF00575 S1 RNA binding domain Y89_5353 PF01138 3' exoribonuclease family, domain 1 Y89_5353 PF03725 3' exoribonuclease family, domain 2 Y89_5353 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Y89_5353 PF00013 KH domain Y89_5354 PF00312 Ribosomal protein S15 Y89_5355 PF16198 tRNA pseudouridylate synthase B C-terminal domain Y89_5355 PF01509 TruB family pseudouridylate synthase (N terminal domain) Y89_5355 PF09157 Pseudouridine synthase II TruB, C-terminal Y89_5356 PF02033 Ribosome-binding factor A Y89_5357 PF08364 Bacterial translation initiation factor IF-2 associated region Y89_5357 PF04760 Translation initiation factor IF-2, N-terminal region Y89_5357 PF00009 Elongation factor Tu GTP binding domain Y89_5357 PF11987 Translation-initiation factor 2 Y89_5358 PF13184 NusA-like KH domain Y89_5358 PF08529 NusA N-terminal domain Y89_5358 PF00575 S1 RNA binding domain Y89_5359 PF17384 RimP C-terminal SH3 domain Y89_5359 PF02576 RimP N-terminal domain Y89_5360 PF00121 Triosephosphate isomerase Y89_5361 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Y89_5361 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Y89_5361 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Y89_5361 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Y89_5362 PF00809 Pterin binding enzyme Y89_5363 PF17862 AAA+ lid domain Y89_5363 PF01434 Peptidase family M41 Y89_5363 PF00004 ATPase family associated with various cellular activities (AAA) Y89_5363 PF06480 FtsH Extracellular Y89_5364 PF01728 FtsJ-like methyltransferase Y89_5365 PF01985 CRS1 / YhbY (CRM) domain Y89_5367 PF03449 Transcription elongation factor, N-terminal Y89_5367 PF01272 Transcription elongation factor, GreA/GreB, C-term Y89_5368 PF02142 MGS-like domain Y89_5368 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Y89_5368 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_5369 PF01810 LysE type translocator Y89_5370 PF00117 Glutamine amidotransferase class-I Y89_5370 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Y89_5371 PF01113 Dihydrodipicolinate reductase, N-terminus Y89_5371 PF05173 Dihydrodipicolinate reductase, C-terminus Y89_5372 PF00226 DnaJ domain Y89_5372 PF01556 DnaJ C terminal domain Y89_5372 PF00684 DnaJ central domain Y89_5373 PF00012 Hsp70 protein Y89_5374 PF01025 GrpE Y89_5375 PF02463 RecF/RecN/SMC N terminal domain Y89_5376 PF01475 Ferric uptake regulator family Y89_5377 PF04355 SmpA / OmlA family Y89_5378 PF03658 RnfH family Ubiquitin Y89_5379 PF03364 Polyketide cyclase / dehydrase and lipid transport Y89_5380 PF01668 SmpB protein Y89_5381 PF07729 FCD domain Y89_5381 PF00392 Bacterial regulatory proteins, gntR family Y89_5382 PF02652 L-lactate permease Y89_5383 PF01070 FMN-dependent dehydrogenase Y89_5385 PF02675 S-adenosylmethionine decarboxylase Y89_5386 PF17284 Spermidine synthase tetramerisation domain Y89_5388 PF00486 Transcriptional regulatory protein, C terminal Y89_5388 PF00072 Response regulator receiver domain Y89_5389 PF08521 Two-component sensor kinase N-terminal Y89_5389 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5389 PF00512 His Kinase A (phospho-acceptor) domain Y89_5390 PF09278 MerR, DNA binding Y89_5390 PF00376 MerR family regulatory protein Y89_5392 PF00892 EamA-like transporter family Y89_5394 PF00072 Response regulator receiver domain Y89_5396 PF00892 EamA-like transporter family Y89_5397 PF01037 Lrp/AsnC ligand binding domain Y89_5398 PF02803 Thiolase, C-terminal domain Y89_5398 PF00108 Thiolase, N-terminal domain Y89_5400 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y89_5400 PF12833 Helix-turn-helix domain Y89_5405 PF03009 Glycerophosphoryl diester phosphodiesterase family Y89_5409 PF01597 Glycine cleavage H-protein Y89_5410 PF04229 GrpB protein Y89_5416 PF13520 Amino acid permease Y89_5417 PF00202 Aminotransferase class-III Y89_5419 PF00009 Elongation factor Tu GTP binding domain Y89_5419 PF09107 Elongation factor SelB, winged helix Y89_5419 PF09106 Elongation factor SelB, winged helix Y89_5419 PF03144 Elongation factor Tu domain 2 Y89_5420 PF12390 Selenocysteine synthase N terminal Y89_5420 PF03841 L-seryl-tRNA selenium transferase Y89_5421 PF04216 Protein involved in formate dehydrogenase formation Y89_5422 PF01292 Prokaryotic cytochrome b561 Y89_5423 PF09163 Formate dehydrogenase N, transmembrane Y89_5423 PF13247 4Fe-4S dicluster domain Y89_5426 PF00561 alpha/beta hydrolase fold Y89_5427 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_5427 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_5432 PF00535 Glycosyl transferase family 2 Y89_5456 PF04233 Phage Mu protein F like protein Y89_5458 PF03237 Terminase-like family Y89_5464 PF01464 Transglycosylase SLT domain Y89_5464 PF14718 Soluble lytic murein transglycosylase L domain Y89_5476 PF00005 ABC transporter Y89_5487 PF00535 Glycosyl transferase family 2 Y89_5489 PF01554 MatE Y89_5491 PF02690 Na+/Pi-cotransporter Y89_5494 PF00690 Cation transporter/ATPase, N-terminus Y89_5494 PF00689 Cation transporting ATPase, C-terminus Y89_5496 PF00797 N-acetyltransferase Y89_5498 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_5498 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y89_5501 PF00106 short chain dehydrogenase Y89_5502 PF03006 Haemolysin-III related Y89_5503 PF00892 EamA-like transporter family Y89_5504 PF10100 Staphylopine dehydrogenase Y89_5505 PF03059 Nicotianamine synthase protein Y89_5506 PF00593 TonB dependent receptor Y89_5506 PF07715 TonB-dependent Receptor Plug Domain Y89_5508 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Y89_5508 PF17944 Arginine decarboxylase C-terminal helical extension Y89_5508 PF17810 Arginine decarboxylase helical bundle domain Y89_5509 PF01253 Translation initiation factor SUI1 Y89_5510 PF00293 NUDIX domain Y89_5513 PF00563 EAL domain Y89_5513 PF00990 Diguanylate cyclase, GGDEF domain Y89_5513 PF00072 Response regulator receiver domain Y89_5514 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_5515 PF11412 Disulphide bond corrector protein DsbC Y89_5515 PF02683 Cytochrome C biogenesis protein transmembrane region Y89_5516 PF01220 Dehydroquinase class II Y89_5517 PF00364 Biotin-requiring enzyme Y89_5518 PF02785 Biotin carboxylase C-terminal domain Y89_5518 PF00289 Biotin carboxylase, N-terminal domain Y89_5518 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_5521 PF01207 Dihydrouridine synthase (Dus) Y89_5522 PF02954 Bacterial regulatory protein, Fis family Y89_5523 PF01808 AICARFT/IMPCHase bienzyme Y89_5523 PF02142 MGS-like domain Y89_5524 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Y89_5524 PF02844 Phosphoribosylglycinamide synthetase, N domain Y89_5524 PF02843 Phosphoribosylglycinamide synthetase, C domain Y89_5525 PF00072 Response regulator receiver domain Y89_5525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y89_5525 PF01627 Hpt domain Y89_5525 PF00512 His Kinase A (phospho-acceptor) domain Y89_5525 PF00672 HAMP domain Y89_5526 PF01914 MarC family integral membrane protein Y89_5527 PF13458 Periplasmic binding protein Y89_5528 PF02653 Branched-chain amino acid transport system / permease component Y89_5529 PF02653 Branched-chain amino acid transport system / permease component Y89_5530 PF00005 ABC transporter Y89_5530 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y89_5531 PF00005 ABC transporter Y89_5533 PF01774 UreD urease accessory protein Y89_5534 PF00547 Urease, gamma subunit Y89_5536 PF00699 Urease beta subunit Y89_5537 PF01979 Amidohydrolase family Y89_5537 PF00449 Urease alpha-subunit, N-terminal domain Y89_5539 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y89_5542 PF00012 Hsp70 protein Y89_5547 PF13411 MerR HTH family regulatory protein Y89_5548 PF05170 AsmA family Y89_5549 PF00210 Ferritin-like domain Y89_5551 PF00174 Oxidoreductase molybdopterin binding domain Y89_5552 PF01292 Prokaryotic cytochrome b561 Y89_5554 PF00072 Response regulator receiver domain Y89_5554 PF00486 Transcriptional regulatory protein, C terminal Y89_5555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5555 PF00672 HAMP domain Y89_5555 PF00512 His Kinase A (phospho-acceptor) domain Y89_5557 PF00487 Fatty acid desaturase Y89_5558 PF00175 Oxidoreductase NAD-binding domain Y89_5558 PF00970 Oxidoreductase FAD-binding domain Y89_5558 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_5559 PF00440 Bacterial regulatory proteins, tetR family Y89_5560 PF02814 UreE urease accessory protein, N-terminal domain Y89_5560 PF05194 UreE urease accessory protein, C-terminal domain Y89_5561 PF01730 UreF Y89_5562 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y89_5563 PF04955 HupE / UreJ protein Y89_5564 PF04773 FecR protein Y89_5564 PF16220 Domain of unknown function (DUF4880) Y89_5565 PF04542 Sigma-70 region 2 Y89_5565 PF08281 Sigma-70, region 4 Y89_5567 PF03573 outer membrane porin, OprD family Y89_5568 PF00171 Aldehyde dehydrogenase family Y89_5571 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_5571 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_5571 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_5572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5572 PF03466 LysR substrate binding domain Y89_5573 PF07690 Major Facilitator Superfamily Y89_5574 PF00355 Rieske [2Fe-2S] domain Y89_5575 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_5575 PF00175 Oxidoreductase NAD-binding domain Y89_5577 PF00106 short chain dehydrogenase Y89_5578 PF02423 Ornithine cyclodeaminase/mu-crystallin family Y89_5579 PF00005 ABC transporter Y89_5580 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y89_5580 PF00005 ABC transporter Y89_5581 PF02653 Branched-chain amino acid transport system / permease component Y89_5581 PF11862 Domain of unknown function (DUF3382) Y89_5582 PF02653 Branched-chain amino acid transport system / permease component Y89_5583 PF13458 Periplasmic binding protein Y89_5584 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5584 PF03466 LysR substrate binding domain Y89_5585 PF00672 HAMP domain Y89_5585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_5585 PF12729 Four helix bundle sensory module for signal transduction Y89_5587 PF01467 Cytidylyltransferase-like Y89_5589 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Y89_5589 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Y89_5590 PF02540 NAD synthase Y89_5592 PF00127 Copper binding proteins, plastocyanin/azurin family Y89_5593 PF03641 Possible lysine decarboxylase Y89_5594 PF01476 LysM domain Y89_5594 PF01551 Peptidase family M23 Y89_5595 PF00924 Mechanosensitive ion channel Y89_5595 PF05552 Conserved TM helix Y89_5596 PF08379 Bacterial transglutaminase-like N-terminal region Y89_5596 PF01841 Transglutaminase-like superfamily Y89_5597 PF04168 A predicted alpha-helical domain with a conserved ER motif. Y89_5597 PF14403 Circularly permuted ATP-grasp type 2 Y89_5598 PF11842 Domain of unknown function (DUF3362) Y89_5598 PF08497 Radical SAM N-terminal Y89_5598 PF04055 Radical SAM superfamily Y89_5599 PF00563 EAL domain Y89_5599 PF13188 PAS domain Y89_5599 PF03707 Bacterial signalling protein N terminal repeat Y89_5599 PF00990 Diguanylate cyclase, GGDEF domain Y89_5600 PF00842 Alanine racemase, C-terminal domain Y89_5600 PF01168 Alanine racemase, N-terminal domain Y89_5601 PF00772 DnaB-like helicase N terminal domain Y89_5601 PF03796 DnaB-like helicase C terminal domain Y89_5602 PF01281 Ribosomal protein L9, N-terminal domain Y89_5602 PF03948 Ribosomal protein L9, C-terminal domain Y89_5604 PF01084 Ribosomal protein S18 Y89_5605 PF01250 Ribosomal protein S6 Y89_5606 PF00588 SpoU rRNA Methylase family Y89_5606 PF08032 RNA 2'-O ribose methyltransferase substrate binding Y89_5607 PF17876 Cold shock domain Y89_5607 PF08461 Ribonuclease R winged-helix domain Y89_5607 PF08206 Ribonuclease B OB domain Y89_5607 PF00773 RNB domain Y89_5607 PF00575 S1 RNA binding domain Y89_5608 PF00709 Adenylosuccinate synthetase Y89_5609 PF13393 Histidyl-tRNA synthetase Y89_5611 PF01145 SPFH domain / Band 7 family Y89_5612 PF01145 SPFH domain / Band 7 family Y89_5613 PF16360 GTP-binding GTPase Middle Region Y89_5613 PF01926 50S ribosome-binding GTPase Y89_5613 PF13167 GTP-binding GTPase N-terminal Y89_5614 PF17209 Hfq protein Y89_5616 PF01119 DNA mismatch repair protein, C-terminal domain Y89_5616 PF08676 MutL C terminal dimerisation domain Y89_5617 PF11741 AMIN domain Y89_5617 PF01520 N-acetylmuramoyl-L-alanine amidase Y89_5618 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Y89_5619 PF01256 Carbohydrate kinase Y89_5619 PF03853 YjeF-related protein N-terminus Y89_5620 PF08331 Domain of unknown function (DUF1730) Y89_5621 PF00929 Exonuclease Y89_5622 PF03193 RsgA GTPase Y89_5623 PF00691 OmpA family Y89_5623 PF13677 Membrane MotB of proton-channel complex MotA/MotB Y89_5624 PF01618 MotA/TolQ/ExbB proton channel family Y89_5626 PF00581 Rhodanese-like domain Y89_5627 PF02666 Phosphatidylserine decarboxylase Y89_5629 PF00563 EAL domain Y89_5629 PF00990 Diguanylate cyclase, GGDEF domain Y89_5629 PF03707 Bacterial signalling protein N terminal repeat Y89_5632 PF04307 LexA-binding, inner membrane-associated putative hydrolase Y89_5634 PF00521 DNA gyrase/topoisomerase IV, subunit A Y89_5634 PF03989 DNA gyrase C-terminal domain, beta-propeller Y89_5637 PF01751 Toprim domain Y89_5637 PF00986 DNA gyrase B subunit, carboxyl terminus Y89_5637 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5637 PF00204 DNA gyrase B Y89_5638 PF05728 Uncharacterised protein family (UPF0227) Y89_5639 PF00149 Calcineurin-like phosphoesterase Y89_5641 PF00293 NUDIX domain Y89_5643 PF13667 ThiC-associated domain Y89_5643 PF01964 Radical SAM ThiC family Y89_5644 PF02321 Outer membrane efflux protein Y89_5645 PF02525 Flavodoxin-like fold Y89_5646 PF00155 Aminotransferase class I and II Y89_5647 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_5647 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_5647 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_5648 PF08442 ATP-grasp domain Y89_5648 PF00549 CoA-ligase Y89_5649 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_5649 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_5649 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_5650 PF00378 Enoyl-CoA hydratase/isomerase Y89_5651 PF00324 Amino acid permease Y89_5652 PF00672 HAMP domain Y89_5652 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5652 PF00072 Response regulator receiver domain Y89_5652 PF01627 Hpt domain Y89_5652 PF00512 His Kinase A (phospho-acceptor) domain Y89_5652 PF17149 Periplasmic sensor domain found in signal transduction proteins Y89_5654 PF00486 Transcriptional regulatory protein, C terminal Y89_5654 PF00072 Response regulator receiver domain Y89_5657 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_5657 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_5659 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Y89_5660 PF03466 LysR substrate binding domain Y89_5660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5661 PF00893 Small Multidrug Resistance protein Y89_5663 PF00248 Aldo/keto reductase family Y89_5665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_5665 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_5665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_5666 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_5666 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_5666 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_5667 PF01467 Cytidylyltransferase-like Y89_5667 PF00294 pfkB family carbohydrate kinase Y89_5668 PF00664 ABC transporter transmembrane region Y89_5668 PF00005 ABC transporter Y89_5670 PF04932 O-Antigen ligase Y89_5671 PF00535 Glycosyl transferase family 2 Y89_5676 PF00534 Glycosyl transferases group 1 Y89_5677 PF16861 Carbamoyltransferase C-terminus Y89_5677 PF02543 Carbamoyltransferase N-terminus Y89_5682 PF13439 Glycosyltransferase Family 4 Y89_5682 PF00534 Glycosyl transferases group 1 Y89_5683 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Y89_5684 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Y89_5685 PF01063 Amino-transferase class IV Y89_5686 PF08335 GlnD PII-uridylyltransferase Y89_5686 PF03710 Glutamate-ammonia ligase adenylyltransferase Y89_5687 PF00456 Transketolase, thiamine diphosphate binding domain Y89_5687 PF17831 Pyruvate dehydrogenase E1 component middle domain Y89_5688 PF02817 e3 binding domain Y89_5688 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Y89_5688 PF00364 Biotin-requiring enzyme Y89_5689 PF03707 Bacterial signalling protein N terminal repeat Y89_5689 PF00563 EAL domain Y89_5689 PF00990 Diguanylate cyclase, GGDEF domain Y89_5690 PF01625 Peptide methionine sulfoxide reductase Y89_5691 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Y89_5692 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_5692 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_5692 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y89_5692 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_5693 PF03471 Transporter associated domain Y89_5693 PF00999 Sodium/hydrogen exchanger family Y89_5693 PF02080 TrkA-C domain Y89_5694 PF12795 Mechanosensitive ion channel porin domain Y89_5694 PF12794 Mechanosensitive ion channel inner membrane domain 1 Y89_5694 PF00924 Mechanosensitive ion channel Y89_5695 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Y89_5696 PF01925 Sulfite exporter TauE/SafE Y89_5697 PF01053 Cys/Met metabolism PLP-dependent enzyme Y89_5700 PF13614 AAA domain Y89_5701 PF03466 LysR substrate binding domain Y89_5701 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5702 PF07690 Major Facilitator Superfamily Y89_5703 PF00106 short chain dehydrogenase Y89_5706 PF01208 Uroporphyrinogen decarboxylase (URO-D) Y89_5707 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Y89_5707 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_5708 PF01493 GXGXG motif Y89_5708 PF01645 Conserved region in glutamate synthase Y89_5708 PF04898 Glutamate synthase central domain Y89_5708 PF00310 Glutamine amidotransferases class-II Y89_5710 PF01761 3-dehydroquinate synthase Y89_5711 PF01202 Shikimate kinase Y89_5712 PF03958 Bacterial type II/III secretion system short domain Y89_5712 PF00263 Bacterial type II and III secretion system protein Y89_5712 PF11741 AMIN domain Y89_5712 PF07660 Secretin and TonB N terminus short domain Y89_5717 PF17092 Penicillin-binding protein OB-like domain Y89_5717 PF00912 Transglycosylase Y89_5717 PF00905 Penicillin binding protein transpeptidase domain Y89_5718 PF00390 Malic enzyme, N-terminal domain Y89_5718 PF03949 Malic enzyme, NAD binding domain Y89_5721 PF01197 Ribosomal protein L31 Y89_5722 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Y89_5722 PF18074 Primosomal protein N C-terminal domain Y89_5722 PF00271 Helicase conserved C-terminal domain Y89_5722 PF17764 3′ DNA-binding domain (3′BD) Y89_5722 PF00270 DEAD/DEAH box helicase Y89_5723 PF00750 tRNA synthetases class I (R) Y89_5723 PF05746 DALR anticodon binding domain Y89_5723 PF03485 Arginyl tRNA synthetase N terminal domain Y89_5725 PF00227 Proteasome subunit Y89_5726 PF07724 AAA domain (Cdc48 subfamily) Y89_5726 PF00004 ATPase family associated with various cellular activities (AAA) Y89_5728 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Y89_5729 PF00561 alpha/beta hydrolase fold Y89_5730 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Y89_5735 PF01209 ubiE/COQ5 methyltransferase family Y89_5737 PF03109 ABC1 family Y89_5738 PF01502 Phosphoribosyl-AMP cyclohydrolase Y89_5739 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Y89_5740 PF02416 mttA/Hcf106 family Y89_5741 PF02416 mttA/Hcf106 family Y89_5742 PF00902 Sec-independent protein translocase protein (TatC) Y89_5744 PF00672 HAMP domain Y89_5744 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_5744 PF16591 Helical bimodular sensor domain Y89_5745 PF03682 Uncharacterised protein family (UPF0158) Y89_5746 PF00005 ABC transporter Y89_5747 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5748 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_5749 PF00535 Glycosyl transferase family 2 Y89_5750 PF04349 Periplasmic glucan biosynthesis protein, MdoG Y89_5751 PF02580 D-Tyr-tRNA(Tyr) deacylase Y89_5752 PF00561 alpha/beta hydrolase fold Y89_5753 PF00293 NUDIX domain Y89_5754 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_5755 PF01042 Endoribonuclease L-PSP Y89_5756 PF01266 FAD dependent oxidoreductase Y89_5757 PF03466 LysR substrate binding domain Y89_5757 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5760 PF13396 Phospholipase_D-nuclease N-terminal Y89_5760 PF13091 PLD-like domain Y89_5761 PF16671 Actin cross-linking domain Y89_5761 PF04717 Type VI secretion system, phage-baseplate injector Y89_5763 PF01979 Amidohydrolase family Y89_5764 PF00221 Aromatic amino acid lyase Y89_5766 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5768 PF00324 Amino acid permease Y89_5769 PF00221 Aromatic amino acid lyase Y89_5770 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y89_5771 PF17391 Urocanase N-terminal domain Y89_5771 PF17392 Urocanase C-terminal domain Y89_5771 PF01175 Urocanase Rossmann-like domain Y89_5775 PF05962 HutD Y89_5776 PF00392 Bacterial regulatory proteins, gntR family Y89_5776 PF07702 UTRA domain Y89_5777 PF01979 Amidohydrolase family Y89_5778 PF08212 Lipocalin-like domain Y89_5781 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Y89_5782 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_5783 PF00657 GDSL-like Lipase/Acylhydrolase Y89_5783 PF03797 Autotransporter beta-domain Y89_5787 PF09278 MerR, DNA binding Y89_5787 PF00376 MerR family regulatory protein Y89_5789 PF02926 THUMP domain Y89_5789 PF02568 Thiamine biosynthesis protein (ThiI) Y89_5790 PF00120 Glutamine synthetase, catalytic domain Y89_5790 PF03951 Glutamine synthetase, beta-Grasp domain Y89_5792 PF00924 Mechanosensitive ion channel Y89_5795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5795 PF00512 His Kinase A (phospho-acceptor) domain Y89_5795 PF00989 PAS fold Y89_5796 PF00072 Response regulator receiver domain Y89_5796 PF00158 Sigma-54 interaction domain Y89_5796 PF02954 Bacterial regulatory protein, Fis family Y89_5799 PF00588 SpoU rRNA Methylase family Y89_5800 PF02556 Preprotein translocase subunit SecB Y89_5801 PF00462 Glutaredoxin Y89_5803 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Y89_5803 PF01676 Metalloenzyme superfamily Y89_5805 PF01551 Peptidase family M23 Y89_5806 PF03572 Peptidase family S41 Y89_5806 PF13180 PDZ domain Y89_5807 PF04748 Divergent polysaccharide deacetylase Y89_5812 PF00977 Histidine biosynthesis protein Y89_5813 PF00977 Histidine biosynthesis protein Y89_5815 PF00117 Glutamine amidotransferase class-I Y89_5816 PF00475 Imidazoleglycerol-phosphate dehydratase Y89_5821 PF14815 NUDIX domain Y89_5821 PF00730 HhH-GPD superfamily base excision DNA repair protein Y89_5821 PF00633 Helix-hairpin-helix motif Y89_5821 PF10576 Iron-sulfur binding domain of endonuclease III Y89_5822 PF04362 Bacterial Fe(2+) trafficking Y89_5823 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y89_5823 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Y89_5826 PF00005 ABC transporter Y89_5827 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_5828 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5829 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5831 PF01047 MarR family Y89_5832 PF02321 Outer membrane efflux protein Y89_5833 PF00529 HlyD membrane-fusion protein of T1SS Y89_5833 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y89_5834 PF07690 Major Facilitator Superfamily Y89_5846 PF13356 Arm DNA-binding domain Y89_5846 PF00589 Phage integrase family Y89_5847 PF16363 GDP-mannose 4,6 dehydratase Y89_5848 PF04321 RmlD substrate binding domain Y89_5849 PF00483 Nucleotidyl transferase Y89_5850 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Y89_5851 PF02743 Cache domain Y89_5851 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5851 PF00512 His Kinase A (phospho-acceptor) domain Y89_5852 PF02954 Bacterial regulatory protein, Fis family Y89_5852 PF00072 Response regulator receiver domain Y89_5852 PF00158 Sigma-54 interaction domain Y89_5853 PF03480 Bacterial extracellular solute-binding protein, family 7 Y89_5854 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Y89_5855 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Y89_5856 PF13520 Amino acid permease Y89_5858 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Y89_5858 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Y89_5859 PF00696 Amino acid kinase family Y89_5860 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_5860 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_5861 PF00459 Inositol monophosphatase family Y89_5862 PF00293 NUDIX domain Y89_5863 PF13419 Haloacid dehalogenase-like hydrolase Y89_5864 PF04972 BON domain Y89_5864 PF01476 LysM domain Y89_5865 PF03466 LysR substrate binding domain Y89_5865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5866 PF02634 FdhD/NarQ family Y89_5867 PF00384 Molybdopterin oxidoreductase Y89_5867 PF01568 Molydopterin dinucleotide binding domain Y89_5870 PF02599 Global regulator protein family Y89_5871 PF01817 Chorismate mutase type II Y89_5872 PF03061 Thioesterase superfamily Y89_5873 PF00465 Iron-containing alcohol dehydrogenase Y89_5874 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_5874 PF12806 Acetyl-CoA dehydrogenase C-terminal like Y89_5874 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_5874 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_5875 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_5875 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_5875 PF00378 Enoyl-CoA hydratase/isomerase Y89_5876 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5876 PF03466 LysR substrate binding domain Y89_5877 PF00881 Nitroreductase family Y89_5879 PF01293 Phosphoenolpyruvate carboxykinase Y89_5880 PF01430 Hsp33 protein Y89_5882 PF01479 S4 domain Y89_5883 PF18030 RimK PreATP-grasp domain Y89_5883 PF08443 RimK-like ATP-grasp domain Y89_5884 PF18030 RimK PreATP-grasp domain Y89_5884 PF08443 RimK-like ATP-grasp domain Y89_5885 PF02016 LD-carboxypeptidase N-terminal domain Y89_5885 PF17676 LD-carboxypeptidase C-terminal domain Y89_5886 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5886 PF00512 His Kinase A (phospho-acceptor) domain Y89_5886 PF00672 HAMP domain Y89_5887 PF00072 Response regulator receiver domain Y89_5887 PF00486 Transcriptional regulatory protein, C terminal Y89_5888 PF00575 S1 RNA binding domain Y89_5888 PF09371 Tex-like protein N-terminal domain Y89_5888 PF16921 Tex protein YqgF-like domain Y89_5888 PF17674 HHH domain Y89_5890 PF04262 Glutamate-cysteine ligase Y89_5891 PF00583 Acetyltransferase (GNAT) family Y89_5891 PF00696 Amino acid kinase family Y89_5892 PF01914 MarC family integral membrane protein Y89_5893 PF01546 Peptidase family M20/M25/M40 Y89_5893 PF07687 Peptidase dimerisation domain Y89_5894 PF01384 Phosphate transporter family Y89_5895 PF01865 Protein of unknown function DUF47 Y89_5896 PF01928 CYTH domain Y89_5897 PF00437 Type II/IV secretion system protein Y89_5900 PF01212 Beta-eliminating lyase Y89_5900 PF02347 Glycine cleavage system P-protein Y89_5901 PF01597 Glycine cleavage H-protein Y89_5902 PF08669 Glycine cleavage T-protein C-terminal barrel domain Y89_5902 PF01571 Aminomethyltransferase folate-binding domain Y89_5903 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5905 PF03466 LysR substrate binding domain Y89_5905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5908 PF01494 FAD binding domain Y89_5910 PF01494 FAD binding domain Y89_5911 PF05195 Aminopeptidase P, N-terminal domain Y89_5911 PF00557 Metallopeptidase family M24 Y89_5912 PF03695 Uncharacterised protein family (UPF0149) Y89_5914 PF05164 Cell division protein ZapA Y89_5915 PF01812 5-formyltetrahydrofolate cyclo-ligase family Y89_5919 PF00005 ABC transporter Y89_5920 PF13533 Biotin-lipoyl like Y89_5922 PF16197 Ketoacyl-synthetase C-terminal extension Y89_5922 PF08990 Erythronolide synthase docking Y89_5922 PF08240 Alcohol dehydrogenase GroES-like domain Y89_5922 PF08659 KR domain Y89_5922 PF14765 Polyketide synthase dehydratase Y89_5922 PF00550 Phosphopantetheine attachment site Y89_5922 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_5922 PF00698 Acyl transferase domain Y89_5922 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_5923 PF07690 Major Facilitator Superfamily Y89_5924 PF00175 Oxidoreductase NAD-binding domain Y89_5925 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Y89_5926 PF01757 Acyltransferase family Y89_5927 PF07498 Rho termination factor, N-terminal domain Y89_5927 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y89_5927 PF07497 Rho termination factor, RNA-binding domain Y89_5928 PF00085 Thioredoxin Y89_5929 PF02541 Ppx/GppA phosphatase family Y89_5930 PF17941 Polyphosphate kinase C-terminal domain 1 Y89_5930 PF13089 Polyphosphate kinase N-terminal domain Y89_5930 PF13090 Polyphosphate kinase C-terminal domain 2 Y89_5930 PF02503 Polyphosphate kinase middle domain Y89_5931 PF00490 Delta-aminolevulinic acid dehydratase Y89_5932 PF09335 SNARE associated Golgi protein Y89_5934 PF03061 Thioesterase superfamily Y89_5935 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Y89_5936 PF03239 Iron permease FTR1 family Y89_5937 PF01810 LysE type translocator Y89_5938 PF03741 Integral membrane protein TerC family Y89_5940 PF12848 ABC transporter Y89_5940 PF00005 ABC transporter Y89_5943 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Y89_5943 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y89_5944 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Y89_5945 PF02600 Disulfide bond formation protein DsbB Y89_5948 PF02602 Uroporphyrinogen-III synthase HemD Y89_5949 PF03900 Porphobilinogen deaminase, C-terminal domain Y89_5949 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Y89_5950 PF04397 LytTr DNA-binding domain Y89_5950 PF00072 Response regulator receiver domain Y89_5951 PF06580 Histidine kinase Y89_5951 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5951 PF07694 5TMR of 5TMR-LYT Y89_5952 PF14698 Argininosuccinate lyase C-terminal Y89_5952 PF00206 Lyase Y89_5955 PF04717 Type VI secretion system, phage-baseplate injector Y89_5955 PF16671 Actin cross-linking domain Y89_5956 PF05638 Type VI secretion system effector, Hcp Y89_5957 PF01544 CorA-like Mg2+ transporter protein Y89_5961 PF01295 Adenylate cyclase, class-I Y89_5961 PF12633 Adenylate cyclase NT domain Y89_5963 PF14760 Rnk N-terminus Y89_5963 PF01272 Transcription elongation factor, GreA/GreB, C-term Y89_5964 PF01491 Frataxin-like domain Y89_5965 PF13627 Prokaryotic lipoprotein-attachment site Y89_5966 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Y89_5966 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Y89_5967 PF01678 Diaminopimelate epimerase Y89_5969 PF00589 Phage integrase family Y89_5969 PF02899 Phage integrase, N-terminal SAM-like domain Y89_5972 PF00155 Aminotransferase class I and II Y89_5972 PF00392 Bacterial regulatory proteins, gntR family Y89_5975 PF01894 Uncharacterised protein family UPF0047 Y89_5976 PF00909 Ammonium Transporter Family Y89_5977 PF00543 Nitrogen regulatory protein P-II Y89_5978 PF04380 Membrane fusogenic activity Y89_5979 PF01078 Magnesium chelatase, subunit ChlI Y89_5979 PF13335 Magnesium chelatase, subunit ChlI C-terminal Y89_5984 PF00698 Acyl transferase domain Y89_5984 PF08240 Alcohol dehydrogenase GroES-like domain Y89_5984 PF00107 Zinc-binding dehydrogenase Y89_5984 PF16197 Ketoacyl-synthetase C-terminal extension Y89_5984 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_5984 PF08659 KR domain Y89_5984 PF00550 Phosphopantetheine attachment site Y89_5984 PF14765 Polyketide synthase dehydratase Y89_5984 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_5985 PF03466 LysR substrate binding domain Y89_5985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5991 PF08240 Alcohol dehydrogenase GroES-like domain Y89_5991 PF00107 Zinc-binding dehydrogenase Y89_5992 PF00106 short chain dehydrogenase Y89_5993 PF03466 LysR substrate binding domain Y89_5993 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5994 PF00005 ABC transporter Y89_5996 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5997 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_5997 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_5998 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5998 PF03466 LysR substrate binding domain Y89_5999 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_6000 PF00296 Luciferase-like monooxygenase Y89_6003 PF17755 UvrA DNA-binding domain Y89_6006 PF13333 Integrase core domain Y89_6006 PF13276 HTH-like domain Y89_6006 PF00665 Integrase core domain Y89_6007 PF08240 Alcohol dehydrogenase GroES-like domain Y89_6007 PF00107 Zinc-binding dehydrogenase Y89_6009 PF08240 Alcohol dehydrogenase GroES-like domain Y89_6009 PF00107 Zinc-binding dehydrogenase Y89_6010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_6022 PF00899 ThiF family Y89_6022 PF14461 Prokaryotic E2 family B Y89_6028 PF01078 Magnesium chelatase, subunit ChlI Y89_6028 PF13335 Magnesium chelatase, subunit ChlI C-terminal Y89_6029 PF02028 BCCT, betaine/carnitine/choline family transporter Y89_6031 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_6031 PF03466 LysR substrate binding domain Y89_6032 PF01554 MatE Y89_6033 PF03707 Bacterial signalling protein N terminal repeat Y89_6033 PF00990 Diguanylate cyclase, GGDEF domain Y89_6033 PF00563 EAL domain Y89_6034 PF00580 UvrD/REP helicase N-terminal domain Y89_6034 PF13361 UvrD-like helicase C-terminal domain Y89_6035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_6035 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_6035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_6036 PF00156 Phosphoribosyl transferase domain Y89_6037 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Y89_6037 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Y89_6038 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_6039 PF01381 Helix-turn-helix Y89_6039 PF07883 Cupin domain Y89_6040 PF01168 Alanine racemase, N-terminal domain Y89_6040 PF00842 Alanine racemase, C-terminal domain Y89_6041 PF01042 Endoribonuclease L-PSP Y89_6042 PF01266 FAD dependent oxidoreductase Y89_6044 PF13617 YnbE-like lipoprotein Y89_6046 PF01037 Lrp/AsnC ligand binding domain Y89_6047 PF01266 FAD dependent oxidoreductase Y89_6048 PF13091 PLD-like domain Y89_6049 PF07690 Major Facilitator Superfamily Y89_6050 PF00171 Aldehyde dehydrogenase family Y89_6051 PF00202 Aminotransferase class-III Y89_6053 PF00471 Ribosomal protein L33 Y89_6054 PF00830 Ribosomal L28 family Y89_6055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y89_6057 PF04002 RadC-like JAB domain Y89_6058 PF02441 Flavoprotein Y89_6058 PF04127 DNA / pantothenate metabolism flavoprotein Y89_6059 PF00692 dUTPase Y89_6060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Y89_6060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Y89_6060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Y89_6060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Y89_6061 PF00696 Amino acid kinase family Y89_6062 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Y89_6062 PF12833 Helix-turn-helix domain Y89_6065 PF01565 FAD binding domain Y89_6065 PF04030 D-arabinono-1,4-lactone oxidase Y89_6066 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_6069 PF00156 Phosphoribosyl transferase domain Y89_6070 PF03372 Endonuclease/Exonuclease/phosphatase family Y89_6072 PF03725 3' exoribonuclease family, domain 2 Y89_6072 PF01138 3' exoribonuclease family, domain 1 Y89_6073 PF03755 YicC-like family, N-terminal region Y89_6073 PF08340 Domain of unknown function (DUF1732) Y89_6074 PF00625 Guanylate kinase Y89_6075 PF01192 RNA polymerase Rpb6 Y89_6076 PF13291 ACT domain Y89_6076 PF04607 Region found in RelA / SpoT proteins Y89_6076 PF02824 TGS domain Y89_6077 PF01042 Endoribonuclease L-PSP Y89_6082 PF03466 LysR substrate binding domain Y89_6082 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_6083 PF00270 DEAD/DEAH box helicase Y89_6083 PF17191 RecG wedge domain Y89_6083 PF00271 Helicase conserved C-terminal domain Y89_6086 PF00216 Bacterial DNA-binding protein Y89_6087 PF18113 Rubredoxin binding C-terminal domain Y89_6087 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_6088 PF00301 Rubredoxin Y89_6089 PF00301 Rubredoxin Y89_6090 PF03928 Haem-degrading Y89_6091 PF02754 Cysteine-rich domain Y89_6091 PF13183 4Fe-4S dicluster domain Y89_6092 PF01565 FAD binding domain Y89_6093 PF01565 FAD binding domain Y89_6093 PF02913 FAD linked oxidases, C-terminal domain Y89_6094 PF00392 Bacterial regulatory proteins, gntR family Y89_6094 PF07729 FCD domain Y89_6095 PF04345 Chorismate lyase Y89_6096 PF01040 UbiA prenyltransferase family Y89_6098 PF00486 Transcriptional regulatory protein, C terminal Y89_6098 PF00072 Response regulator receiver domain Y89_6099 PF11808 Phosphate regulon sensor protein PhoR Y89_6099 PF00512 His Kinase A (phospho-acceptor) domain Y89_6099 PF00989 PAS fold Y89_6099 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_6100 PF00571 CBS domain Y89_6100 PF03471 Transporter associated domain Y89_6100 PF01595 Cyclin M transmembrane N-terminal domain Y89_6101 PF01551 Peptidase family M23 Y89_6101 PF01476 LysM domain Y89_6101 PF08525 Opacity-associated protein A N-terminal motif Y89_6102 PF00072 Response regulator receiver domain Y89_6103 PF01895 PhoU domain Y89_6104 PF00005 ABC transporter Y89_6105 PF00528 Binding-protein-dependent transport system inner membrane component Y89_6106 PF00528 Binding-protein-dependent transport system inner membrane component Y89_6107 PF12849 PBP superfamily domain Y89_6108 PF07690 Major Facilitator Superfamily Y89_6109 PF03061 Thioesterase superfamily Y89_6110 PF05199 GMC oxidoreductase Y89_6110 PF00732 GMC oxidoreductase Y89_6111 PF00171 Aldehyde dehydrogenase family Y89_6112 PF00440 Bacterial regulatory proteins, tetR family Y89_6112 PF13977 BetI-type transcriptional repressor, C-terminal Y89_6113 PF02028 BCCT, betaine/carnitine/choline family transporter Y89_6114 PF00005 ABC transporter Y89_6114 PF00571 CBS domain Y89_6115 PF00528 Binding-protein-dependent transport system inner membrane component Y89_6116 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y89_6117 PF03313 Serine dehydratase alpha chain Y89_6117 PF03315 Serine dehydratase beta chain Y89_6118 PF01965 DJ-1/PfpI family Y89_6118 PF12833 Helix-turn-helix domain Y89_6120 PF03466 LysR substrate binding domain Y89_6120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_6121 PF03601 Conserved hypothetical protein 698 Y89_6122 PF07859 alpha/beta hydrolase fold Y89_6124 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_6124 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_6125 PF05853 beta-keto acid cleavage enzyme Y89_6126 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y89_6127 PF01965 DJ-1/PfpI family Y89_6127 PF12833 Helix-turn-helix domain Y89_6128 PF07687 Peptidase dimerisation domain Y89_6128 PF01546 Peptidase family M20/M25/M40 Y89_6130 PF01042 Endoribonuclease L-PSP Y89_6132 PF13091 PLD-like domain Y89_6134 PF01244 Membrane dipeptidase (Peptidase family M19) Y89_6136 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_6137 PF02754 Cysteine-rich domain Y89_6137 PF13183 4Fe-4S dicluster domain Y89_6138 PF01012 Electron transfer flavoprotein domain Y89_6138 PF00766 Electron transfer flavoprotein FAD-binding domain Y89_6141 PF13443 Cro/C1-type HTH DNA-binding domain Y89_6149 PF00355 Rieske [2Fe-2S] domain Y89_6149 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y89_6150 PF00970 Oxidoreductase FAD-binding domain Y89_6150 PF00042 Globin Y89_6150 PF00175 Oxidoreductase NAD-binding domain Y89_6152 PF01212 Beta-eliminating lyase Y89_6154 PF00464 Serine hydroxymethyltransferase Y89_6155 PF01266 FAD dependent oxidoreductase Y89_6157 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_6157 PF08669 Glycine cleavage T-protein C-terminal barrel domain Y89_6157 PF01571 Aminomethyltransferase folate-binding domain Y89_6157 PF17806 Sarcosine oxidase A3 domain Y89_6159 PF00551 Formyl transferase Y89_6160 PF08240 Alcohol dehydrogenase GroES-like domain Y89_6160 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Y89_6161 PF01263 Aldose 1-epimerase Y89_6164 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Y89_6164 PF02222 ATP-grasp domain Y89_6165 PF00731 AIR carboxylase Y89_6166 PF00107 Zinc-binding dehydrogenase Y89_6166 PF08240 Alcohol dehydrogenase GroES-like domain Y89_6167 PF03466 LysR substrate binding domain Y89_6167 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_6168 PF10415 Fumarase C C-terminus Y89_6168 PF00206 Lyase Y89_6169 PF04143 Sulphur transport Y89_6170 PF00392 Bacterial regulatory proteins, gntR family Y89_6170 PF00155 Aminotransferase class I and II Y89_6173 PF03222 Tryptophan/tyrosine permease family Y89_6174 PF02436 Conserved carboxylase domain Y89_6174 PF00682 HMGL-like Y89_6174 PF00364 Biotin-requiring enzyme Y89_6175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_6175 PF02785 Biotin carboxylase C-terminal domain Y89_6175 PF00289 Biotin carboxylase, N-terminal domain Y89_6176 PF03466 LysR substrate binding domain Y89_6176 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_6178 PF01418 Helix-turn-helix domain, rpiR family Y89_6178 PF01380 SIS domain Y89_6179 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Y89_6179 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Y89_6183 PF00990 Diguanylate cyclase, GGDEF domain Y89_6183 PF00563 EAL domain Y89_6183 PF03707 Bacterial signalling protein N terminal repeat Y89_6184 PF13361 UvrD-like helicase C-terminal domain Y89_6184 PF00580 UvrD/REP helicase N-terminal domain Y89_6185 PF00892 EamA-like transporter family Y89_6186 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Y89_6186 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Y89_6188 PF00534 Glycosyl transferases group 1 Y89_6188 PF13439 Glycosyltransferase Family 4 Y89_6189 PF13579 Glycosyl transferase 4-like domain Y89_6189 PF00534 Glycosyl transferases group 1 Y89_6191 PF00005 ABC transporter Y89_6193 PF00483 Nucleotidyl transferase Y89_6193 PF01050 Mannose-6-phosphate isomerase Y89_6194 PF16363 GDP-mannose 4,6 dehydratase Y89_6195 PF16363 GDP-mannose 4,6 dehydratase Y89_6199 PF01757 Acyltransferase family Y89_6207 PF03547 Membrane transport protein Y89_6209 PF03600 Citrate transporter Y89_6210 PF03741 Integral membrane protein TerC family Y89_6211 PF00472 RF-1 domain Y89_6214 PF02690 Na+/Pi-cotransporter Y89_6217 PF07690 Major Facilitator Superfamily Y89_6219 PF07670 Nucleoside recognition Y89_6220 PF00375 Sodium:dicarboxylate symporter family Y89_6223 PF02954 Bacterial regulatory protein, Fis family Y89_6223 PF00072 Response regulator receiver domain Y89_6223 PF00158 Sigma-54 interaction domain Y89_6224 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB Y89_6224 PF00512 His Kinase A (phospho-acceptor) domain Y89_6224 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_6224 PF00672 HAMP domain Y89_6224 PF08448 PAS fold Y89_6225 PF01510 N-acetylmuramoyl-L-alanine amidase Y89_6226 PF01914 MarC family integral membrane protein Y89_6227 PF00072 Response regulator receiver domain Y89_6227 PF00990 Diguanylate cyclase, GGDEF domain Y89_6229 PF01323 DSBA-like thioredoxin domain Y89_6230 PF00034 Cytochrome c Y89_6231 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_6232 PF01926 50S ribosome-binding GTPase Y89_6233 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Y89_6233 PF01612 3'-5' exonuclease Y89_6233 PF01367 5'-3' exonuclease, C-terminal SAM fold Y89_6233 PF00476 DNA polymerase family A Y89_6235 PF01636 Phosphotransferase enzyme family Y89_6238 PF01297 Zinc-uptake complex component A periplasmic Y89_6239 PF01475 Ferric uptake regulator family Y89_6240 PF00005 ABC transporter Y89_6241 PF00950 ABC 3 transport family Y89_6243 PF09383 NIL domain Y89_6243 PF00005 ABC transporter Y89_6244 PF00528 Binding-protein-dependent transport system inner membrane component Y89_6245 PF03180 NLPA lipoprotein Y89_6250 PF00324 Amino acid permease Y89_6251 PF02954 Bacterial regulatory protein, Fis family Y89_6251 PF00072 Response regulator receiver domain Y89_6251 PF00158 Sigma-54 interaction domain Y89_6252 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_6252 PF00512 His Kinase A (phospho-acceptor) domain Y89_6252 PF02743 Cache domain Y89_6254 PF00905 Penicillin binding protein transpeptidase domain Y89_6256 PF08543 Phosphomethylpyrimidine kinase Y89_6258 PF00999 Sodium/hydrogen exchanger family Y89_6258 PF02254 TrkA-N domain Y89_6259 PF03061 Thioesterase superfamily Y89_6262 PF00120 Glutamine synthetase, catalytic domain Y89_6263 PF00202 Aminotransferase class-III Y89_6269 PF02254 TrkA-N domain Y89_6269 PF00999 Sodium/hydrogen exchanger family Y89_6270 PF00083 Sugar (and other) transporter Y89_6271 PF03544 Gram-negative bacterial TonB protein C-terminal Y89_6272 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y89_6272 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y89_6275 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y89_6275 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y89_6276 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y89_6278 PF01520 N-acetylmuramoyl-L-alanine amidase Y89_6279 PF02649 Type I GTP cyclohydrolase folE2 Y89_6281 PF01979 Amidohydrolase family Y89_6285 PF16868 NMT1-like family Y89_6289 PF01380 SIS domain Y89_6290 PF00455 DeoR C terminal sensor domain Y89_6290 PF08220 DeoR-like helix-turn-helix domain Y89_6292 PF12804 MobA-like NTP transferase domain Y89_6292 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_6293 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Y89_6293 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Y89_6294 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y89_6294 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y89_6295 PF00231 ATP synthase Y89_6296 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y89_6296 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y89_6296 PF00306 ATP synthase alpha/beta chain, C terminal domain Y89_6297 PF00213 ATP synthase delta (OSCP) subunit Y89_6298 PF00430 ATP synthase B/B' CF(0) Y89_6299 PF00137 ATP synthase subunit C Y89_6300 PF00119 ATP synthase A chain Y89_6301 PF03899 ATP synthase I chain Y89_6302 PF02195 ParB-like nuclease domain Y89_6302 PF17762 HTH domain found in ParB protein Y89_6303 PF13614 AAA domain Y89_6304 PF02527 rRNA small subunit methyltransferase G Y89_6305 PF13932 GidA associated domain Y89_6305 PF01134 Glucose inhibited division protein A Y89_6307 PF10396 GTP-binding protein TrmE N-terminus Y89_6307 PF12631 MnmE helical domain Y89_6307 PF01926 50S ribosome-binding GTPase Y89_6308 PF14849 YidC periplasmic domain Y89_6308 PF02096 60Kd inner membrane protein Y89_6309 PF00825 Ribonuclease P Y89_6310 PF00468 Ribosomal protein L34 Y89_6316 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Y89_6317 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Y89_6320 PF00872 Transposase, Mutator family Y89_6322 PF00589 Phage integrase family Y89_6323 PF13614 AAA domain Y89_6330 PF00772 DnaB-like helicase N terminal domain Y89_6330 PF03796 DnaB-like helicase C terminal domain Y89_6336 PF04245 37-kD nucleoid-associated bacterial protein Y89_6348 PF01131 DNA topoisomerase Y89_6348 PF01751 Toprim domain Y89_6348 PF01396 Topoisomerase DNA binding C4 zinc finger Y89_6350 PF00176 SNF2 family N-terminal domain Y89_6350 PF00271 Helicase conserved C-terminal domain Y89_6351 PF01381 Helix-turn-helix Y89_6356 PF00437 Type II/IV secretion system protein Y89_6359 PF00437 Type II/IV secretion system protein Y89_6359 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Y89_6360 PF04917 Bacterial shufflon protein, N-terminal constant region Y89_6386 PF12705 PD-(D/E)XK nuclease superfamily Y89_6386 PF00580 UvrD/REP helicase N-terminal domain Y89_6386 PF13361 UvrD-like helicase C-terminal domain Y89_6400 PF00145 C-5 cytosine-specific DNA methylase