Y89_0001 PF00308 Bacterial dnaA protein Y89_0001 PF08299 Bacterial dnaA protein helix-turn-helix Y89_0001 PF11638 DnaA N-terminal domain Y89_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Y89_0002 PF02767 DNA polymerase III beta subunit, central domain Y89_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Y89_0003 PF02463 RecF/RecN/SMC N terminal domain Y89_0004 PF00204 DNA gyrase B Y89_0004 PF00986 DNA gyrase B subunit, carboxyl terminus Y89_0004 PF01751 Toprim domain Y89_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0005 PF01527 Transposase Y89_0009 PF00176 SNF2 family N-terminal domain Y89_0009 PF00271 Helicase conserved C-terminal domain Y89_0011 PF01553 Acyltransferase Y89_0012 PF13242 HAD-hyrolase-like Y89_0014 PF02092 Y89_0014 Y89_0014 PF05746 DALR anticodon binding domain Y89_0015 PF02091 Glycyl-tRNA synthetase alpha subunit Y89_0016 PF03352 Methyladenine glycosylase Y89_0017 PF03279 Y89_0017 Y89_0018 PF07238 PilZ domain Y89_0019 PF02592 Y89_0019 Y89_0021 PF13428 Tetratricopeptide repeat Y89_0022 PF02080 TrkA-C domain Y89_0022 PF02254 TrkA-N domain Y89_0023 PF01029 NusB family Y89_0023 PF01189 NOL1/NOP2/sun family Y89_0024 PF00551 Formyl transferase Y89_0024 PF02911 Formyl transferase, C-terminal domain Y89_0025 PF01327 Polypeptide deformylase Y89_0026 PF01476 LysM domain Y89_0027 PF02481 DNA recombination-mediator protein A Y89_0028 PF01300 Telomere recombination Y89_0029 PF00107 Zinc-binding dehydrogenase Y89_0029 PF08240 Alcohol dehydrogenase GroES-like domain Y89_0030 PF01218 Coproporphyrinogen III oxidase Y89_0031 PF01488 Shikimate / quinate 5-dehydrogenase Y89_0031 PF08501 Shikimate dehydrogenase substrate binding domain Y89_0033 PF13145 PPIC-type PPIASE domain Y89_0035 PF00916 Y89_0035 Y89_0035 PF13466 STAS domain Y89_0036 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y89_0037 PF00884 Sulfatase Y89_0037 PF12411 Y89_0037 Y89_0038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0038 PF03466 LysR substrate binding domain Y89_0039 PF08883 Dopa 4,5-dioxygenase family Y89_0040 PF01627 Hpt domain Y89_0041 PF00072 Response regulator receiver domain Y89_0041 PF00196 Bacterial regulatory proteins, luxR family Y89_0042 PF00290 Tryptophan synthase alpha chain Y89_0043 PF00291 Pyridoxal-phosphate dependent enzyme Y89_0044 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0044 PF03466 LysR substrate binding domain Y89_0045 PF07311 Dodecin Y89_0046 PF06649 Y89_0046 Y89_0047 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y89_0047 PF08479 POTRA domain, ShlB-type Y89_0047 PF17287 Y89_0047 Y89_0048 PF04829 Y89_0048 Y89_0048 PF05594 Y89_0048 Y89_0048 PF05860 haemagglutination activity domain Y89_0048 PF13332 Y89_0048 Y89_0049 PF04830 Y89_0049 Y89_0049 PF13332 Y89_0049 Y89_0051 PF01797 Transposase IS200 like Y89_0053 PF02308 Y89_0053 Y89_0053 PF13194 Y89_0053 Y89_0054 PF03496 ADP-ribosyltransferase exoenzyme Y89_0054 PF03545 Yersinia virulence determinant (YopE) Y89_0055 PF03783 Curli production assembly/transport component CsgG Y89_0056 PF16068 Y89_0056 Y89_0057 PF05643 Putative bacterial lipoprotein (DUF799) Y89_0058 PF01381 Helix-turn-helix Y89_0062 PF00733 Asparagine synthase Y89_0062 PF13537 Glutamine amidotransferase domain Y89_0064 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family Y89_0065 PF09351 Domain of unknown function (DUF1993) Y89_0066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0066 PF03466 LysR substrate binding domain Y89_0067 PF00753 Metallo-beta-lactamase superfamily Y89_0068 PF01323 DSBA-like thioredoxin domain Y89_0069 PF02566 OsmC-like protein Y89_0070 PF06649 Y89_0070 Y89_0073 PF10023 Y89_0073 Y89_0075 PF13419 Haloacid dehalogenase-like hydrolase Y89_0076 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_0077 PF01432 Peptidase family M3 Y89_0078 PF09526 Y89_0078 Y89_0079 PF04055 Radical SAM superfamily Y89_0080 PF13488 Y89_0080 Y89_0081 PF03781 Sulfatase-modifying factor enzyme 1 Y89_0083 PF00005 ABC transporter Y89_0084 PF00069 Protein kinase domain Y89_0084 PF00092 von Willebrand factor type A domain Y89_0085 PF13672 Protein phosphatase 2C Y89_0086 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) Y89_0087 PF06744 Y89_0087 Y89_0087 PF06761 Y89_0087 Y89_0087 PF14331 Y89_0087 Y89_0088 PF00691 OmpA family Y89_0088 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) Y89_0089 PF05936 Y89_0089 Y89_0090 PF12790 Type VI secretion lipoprotein Y89_0091 PF00498 FHA domain Y89_0092 PF06812 Y89_0092 Y89_0093 PF05591 Y89_0093 Y89_0094 PF05943 Y89_0094 Y89_0095 PF05638 Protein of unknown function (DUF796) Y89_0096 PF07024 ImpE protein Y89_0097 PF04965 Gene 25-like lysozyme Y89_0098 PF05947 Y89_0098 Y89_0099 PF06996 Y89_0099 Y89_0100 PF00004 ATPase family associated with various cellular activities (AAA) Y89_0100 PF07724 AAA domain (Cdc48 subfamily) Y89_0100 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_0101 PF05954 Phage late control gene D protein (GPD) Y89_0104 PF05488 PAAR motif Y89_0105 PF08786 Domain of unknown function (DUF1795) Y89_0106 PF05954 Phage late control gene D protein (GPD) Y89_0106 PF06715 Gp5 C-terminal repeat (3 copies) Y89_0108 PF09937 Y89_0108 Y89_0110 PF13665 Y89_0110 Y89_0110 PF15635 Y89_0110 Y89_0112 PF13646 HEAT repeats Y89_0113 PF00484 Carbonic anhydrase Y89_0114 PF00916 Y89_0114 Y89_0116 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Y89_0116 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Y89_0116 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_0117 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y89_0118 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Y89_0119 PF00510 Cytochrome c oxidase subunit III Y89_0120 PF11137 Y89_0120 Y89_0121 PF02104 Y89_0121 Y89_0123 PF02628 Y89_0123 Y89_0124 PF01040 UbiA prenyltransferase family Y89_0125 PF02630 SCO1/SenC Y89_0126 PF13673 Acetyltransferase (GNAT) domain Y89_0127 PF01638 HxlR-like helix-turn-helix Y89_0128 PF00106 short chain dehydrogenase Y89_0129 PF01323 DSBA-like thioredoxin domain Y89_0130 PF00375 Sodium:dicarboxylate symporter family Y89_0131 PF00392 Bacterial regulatory proteins, gntR family Y89_0131 PF07729 FCD domain Y89_0132 PF00392 Bacterial regulatory proteins, gntR family Y89_0132 PF07729 FCD domain Y89_0133 PF06355 Aegerolysin Y89_0134 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0134 PF03466 LysR substrate binding domain Y89_0135 PF05016 Plasmid stabilisation system protein Y89_0136 PF01402 Ribbon-helix-helix protein, copG family Y89_0138 PF03168 Late embryogenesis abundant protein Y89_0139 PF03831 PhnA protein Y89_0139 PF08274 PhnA Zinc-Ribbon Y89_0140 PF13175 AAA ATPase domain Y89_0140 PF13304 AAA domain Y89_0141 PF01527 Transposase Y89_0142 PF00324 Amino acid permease Y89_0143 PF00171 Aldehyde dehydrogenase family Y89_0144 PF07883 Cupin domain Y89_0145 PF00202 Aminotransferase class-III Y89_0146 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0146 PF03466 LysR substrate binding domain Y89_0147 PF01979 Amidohydrolase family Y89_0149 PF00005 ABC transporter Y89_0150 PF02653 Y89_0150 Y89_0151 PF02653 Y89_0151 Y89_0152 PF00578 AhpC/TSA family Y89_0152 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y89_0153 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_0153 PF13192 Thioredoxin domain Y89_0154 PF03976 Polyphosphate kinase 2 (PPK2) Y89_0155 PF01979 Amidohydrolase family Y89_0156 PF01156 Inosine-uridine preferring nucleoside hydrolase Y89_0157 PF05014 Nucleoside 2-deoxyribosyltransferase Y89_0158 PF05014 Nucleoside 2-deoxyribosyltransferase Y89_0159 PF02608 Basic membrane protein Y89_0160 PF03171 2OG-Fe(II) oxygenase superfamily Y89_0160 PF14226 non-haem dioxygenase in morphine synthesis N-terminal Y89_0161 PF00962 Adenosine/AMP deaminase Y89_0162 PF04542 Sigma-70 region 2 Y89_0162 PF08281 Sigma-70, region 4 Y89_0163 PF04773 FecR protein Y89_0163 PF16220 Y89_0163 Y89_0163 PF16344 Y89_0163 Y89_0164 PF00593 TonB dependent receptor Y89_0164 PF07660 Secretin and TonB N terminus short domain Y89_0164 PF07715 TonB-dependent Receptor Plug Domain Y89_0165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0165 PF03466 LysR substrate binding domain Y89_0166 PF00775 Dioxygenase Y89_0166 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal Y89_0167 PF00775 Dioxygenase Y89_0168 PF01614 Bacterial transcriptional regulator Y89_0168 PF09339 IclR helix-turn-helix domain Y89_0169 PF16576 Y89_0169 Y89_0170 PF16576 Y89_0170 Y89_0171 PF00873 AcrB/AcrD/AcrF family Y89_0172 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0172 PF03466 LysR substrate binding domain Y89_0174 PF03573 outer membrane porin, OprD family Y89_0175 PF02311 AraC-like ligand binding domain Y89_0175 PF12833 Helix-turn-helix domain Y89_0176 PF01019 Gamma-glutamyltranspeptidase Y89_0177 PF03502 Nucleoside-specific channel-forming protein, Tsx Y89_0178 PF00860 Permease family Y89_0179 PF00440 Bacterial regulatory proteins, tetR family Y89_0179 PF08362 YcdC-like protein, C-terminal region Y89_0180 PF01205 Uncharacterized protein family UPF0029 Y89_0180 PF09186 Domain of unknown function (DUF1949) Y89_0181 PF00990 GGDEF domain Y89_0182 PF09345 Y89_0182 Y89_0184 PF00672 HAMP domain Y89_0184 PF07228 Stage II sporulation protein E (SpoIIE) Y89_0185 PF00072 Response regulator receiver domain Y89_0185 PF01339 CheB methylesterase Y89_0186 PF03975 CheD chemotactic sensory transduction Y89_0187 PF01739 CheR methyltransferase, SAM binding domain Y89_0187 PF03705 CheR methyltransferase, all-alpha domain Y89_0188 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_0188 PF13188 PAS domain Y89_0189 PF01584 CheW-like domain Y89_0190 PF01584 CheW-like domain Y89_0190 PF01627 Hpt domain Y89_0190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0190 PF02895 Signal transducing histidine kinase, homodimeric domain Y89_0191 PF00072 Response regulator receiver domain Y89_0192 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_0193 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0193 PF03466 LysR substrate binding domain Y89_0194 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_0195 PF00884 Sulfatase Y89_0196 PF00005 ABC transporter Y89_0197 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0198 PF09084 NMT1/THI5 like Y89_0199 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y89_0200 PF03547 Y89_0200 Y89_0201 PF03573 outer membrane porin, OprD family Y89_0202 PF01569 PAP2 superfamily Y89_0203 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0203 PF03466 LysR substrate binding domain Y89_0204 PF00593 TonB dependent receptor Y89_0204 PF07715 TonB-dependent Receptor Plug Domain Y89_0205 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y89_0206 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y89_0207 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Y89_0207 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Y89_0208 PF12769 Domain of unknown function (DUF3814) Y89_0209 PF02233 NAD(P) transhydrogenase beta subunit Y89_0210 PF03544 Gram-negative bacterial TonB protein C-terminal Y89_0211 PF01618 Y89_0211 Y89_0212 PF02472 Biopolymer transport protein ExbD/TolR Y89_0213 PF11278 Y89_0213 Y89_0214 PF06821 Serine hydrolase Y89_0215 PF16957 Y89_0215 Y89_0216 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Y89_0217 PF06857 Y89_0217 Y89_0218 PF01039 Carboxyl transferase domain Y89_0219 PF06833 Malonate decarboxylase gamma subunit (MdcE) Y89_0220 PF10620 Y89_0220 Y89_0221 PF00698 Acyl transferase domain Y89_0222 PF03817 Y89_0222 Y89_0223 PF03818 Y89_0223 Y89_0224 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0224 PF03466 LysR substrate binding domain Y89_0225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0225 PF03466 LysR substrate binding domain Y89_0226 PF00171 Aldehyde dehydrogenase family Y89_0227 PF13520 Amino acid permease Y89_0228 PF00202 Aminotransferase class-III Y89_0229 PF13416 Bacterial extracellular solute-binding protein Y89_0230 PF00701 Dihydrodipicolinate synthetase family Y89_0231 PF00596 Class II Aldolase and Adducin N-terminal domain Y89_0232 PF01381 Helix-turn-helix Y89_0232 PF07883 Cupin domain Y89_0233 PF01144 Coenzyme A transferase Y89_0234 PF01144 Coenzyme A transferase Y89_0235 PF00108 Thiolase, N-terminal domain Y89_0235 PF02803 Thiolase, C-terminal domain Y89_0236 PF00083 Sugar (and other) transporter Y89_0236 PF07690 Major Facilitator Superfamily Y89_0237 PF00206 Lyase Y89_0237 PF10397 Adenylosuccinate lyase C-terminus Y89_0238 PF00561 alpha/beta hydrolase fold Y89_0239 PF02627 Carboxymuconolactone decarboxylase family Y89_0240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0240 PF03466 LysR substrate binding domain Y89_0242 PF07690 Major Facilitator Superfamily Y89_0243 PF01614 Bacterial transcriptional regulator Y89_0243 PF09339 IclR helix-turn-helix domain Y89_0244 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y89_0244 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Y89_0245 PF01261 Xylose isomerase-like TIM barrel Y89_0246 PF00892 EamA-like transporter family Y89_0247 PF03573 outer membrane porin, OprD family Y89_0248 PF07690 Major Facilitator Superfamily Y89_0249 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_0249 PF01261 Xylose isomerase-like TIM barrel Y89_0249 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Y89_0250 PF00440 Bacterial regulatory proteins, tetR family Y89_0251 PF08501 Shikimate dehydrogenase substrate binding domain Y89_0252 PF01220 Dehydroquinase class II Y89_0253 PF07690 Major Facilitator Superfamily Y89_0254 PF01494 FAD binding domain Y89_0255 PF02311 AraC-like ligand binding domain Y89_0255 PF12833 Helix-turn-helix domain Y89_0256 PF13508 Acetyltransferase (GNAT) domain Y89_0257 PF00571 CBS domain Y89_0258 PF05076 Suppressor of fused protein (SUFU) Y89_0260 PF01047 MarR family Y89_0261 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Y89_0263 PF06912 Y89_0263 Y89_0265 PF13683 Y89_0265 Y89_0267 PF11394 Y89_0267 Y89_0268 PF11678 Y89_0268 Y89_0270 PF05954 Phage late control gene D protein (GPD) Y89_0270 PF10106 Y89_0270 Y89_0270 PF13296 Y89_0270 Y89_0271 PF05638 Protein of unknown function (DUF796) Y89_0272 PF04851 Type III restriction enzyme, res subunit Y89_0273 PF06048 Y89_0273 Y89_0274 PF11275 Y89_0274 Y89_0279 PF05930 Prophage CP4-57 regulatory protein (AlpA) Y89_0280 PF12728 Helix-turn-helix domain Y89_0282 PF00589 Phage integrase family Y89_0282 PF13356 Domain of unknown function (DUF4102) Y89_0283 PF00171 Aldehyde dehydrogenase family Y89_0284 PF00202 Aminotransferase class-III Y89_0285 PF00072 Response regulator receiver domain Y89_0285 PF08668 HDOD domain Y89_0286 PF00155 Aminotransferase class I and II Y89_0286 PF00392 Bacterial regulatory proteins, gntR family Y89_0287 PF02627 Carboxymuconolactone decarboxylase family Y89_0288 PF07883 Cupin domain Y89_0289 PF03992 Antibiotic biosynthesis monooxygenase Y89_0290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0290 PF03466 LysR substrate binding domain Y89_0291 PF07690 Major Facilitator Superfamily Y89_0293 PF00027 Cyclic nucleotide-binding domain Y89_0293 PF13545 Crp-like helix-turn-helix domain Y89_0294 PF06127 Y89_0294 Y89_0295 PF01435 Peptidase family M48 Y89_0296 PF01925 Y89_0296 Y89_0297 PF12840 Helix-turn-helix domain Y89_0298 PF00005 ABC transporter Y89_0298 PF12857 Y89_0298 Y89_0299 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0300 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0301 PF13531 Bacterial extracellular solute-binding protein Y89_0302 PF10055 Y89_0302 Y89_0303 PF00563 EAL domain Y89_0303 PF00989 PAS fold Y89_0303 PF00990 GGDEF domain Y89_0303 PF08447 PAS fold Y89_0304 PF00487 Y89_0304 Y89_0304 PF01610 Y89_0304 Y89_0305 PF00474 Sodium:solute symporter family Y89_0306 PF00491 Arginase family Y89_0307 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0307 PF03466 LysR substrate binding domain Y89_0308 PF00990 GGDEF domain Y89_0308 PF08447 PAS fold Y89_0309 PF03573 outer membrane porin, OprD family Y89_0310 PF04371 Porphyromonas-type peptidyl-arginine deiminase Y89_0311 PF00795 Carbon-nitrogen hydrolase Y89_0312 PF00440 Bacterial regulatory proteins, tetR family Y89_0313 PF13416 Bacterial extracellular solute-binding protein Y89_0314 PF00120 Glutamine synthetase, catalytic domain Y89_0315 PF07722 Peptidase C26 Y89_0316 PF00120 Glutamine synthetase, catalytic domain Y89_0317 PF00202 Aminotransferase class-III Y89_0318 PF13416 Bacterial extracellular solute-binding protein Y89_0319 PF13416 Bacterial extracellular solute-binding protein Y89_0320 PF00005 ABC transporter Y89_0320 PF08402 TOBE domain Y89_0321 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0322 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0323 PF01804 Penicillin amidase Y89_0324 PF12625 Y89_0324 Y89_0324 PF12833 Helix-turn-helix domain Y89_0327 PF12146 Putative lysophospholipase Y89_0329 PF13640 2OG-Fe(II) oxygenase superfamily Y89_0332 PF04463 Y89_0332 Y89_0333 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0334 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_0335 PF14347 Y89_0335 Y89_0336 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_0336 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_0337 PF01565 FAD binding domain Y89_0337 PF02913 FAD linked oxidases, C-terminal domain Y89_0338 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_0339 PF06977 SdiA-regulated Y89_0340 PF04076 Bacterial OB fold (BOF) protein Y89_0341 PF00850 Histone deacetylase domain Y89_0342 PF00324 Amino acid permease Y89_0343 PF13416 Bacterial extracellular solute-binding protein Y89_0344 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0345 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0346 PF00005 ABC transporter Y89_0346 PF08402 TOBE domain Y89_0347 PF06977 SdiA-regulated Y89_0348 PF03797 Autotransporter beta-domain Y89_0348 PF04389 Peptidase family M28 Y89_0349 PF07411 Domain of unknown function (DUF1508) Y89_0350 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Y89_0351 PF00291 Pyridoxal-phosphate dependent enzyme Y89_0351 PF00585 C-terminal regulatory domain of Threonine dehydratase Y89_0352 PF10027 Y89_0352 Y89_0353 PF01370 NAD dependent epimerase/dehydratase family Y89_0353 PF13781 Y89_0353 Y89_0354 PF10027 Y89_0354 Y89_0355 PF07690 Major Facilitator Superfamily Y89_0356 PF12710 haloacid dehalogenase-like hydrolase Y89_0357 PF00293 NUDIX domain Y89_0358 PF00391 PEP-utilising enzyme, mobile domain Y89_0358 PF01590 GAF domain Y89_0358 PF02896 PEP-utilising enzyme, TIM barrel domain Y89_0358 PF05524 PEP-utilising enzyme, N-terminal Y89_0359 PF00990 GGDEF domain Y89_0359 PF08447 PAS fold Y89_0360 PF05742 Y89_0360 Y89_0361 PF01925 Y89_0361 Y89_0362 PF01790 Y89_0362 Y89_0363 PF00303 Thymidylate synthase Y89_0364 PF05050 Methyltransferase FkbM domain Y89_0365 PF01926 50S ribosome-binding GTPase Y89_0365 PF11981 Y89_0365 Y89_0366 PF11067 Y89_0366 Y89_0368 PF03009 Glycerophosphoryl diester phosphodiesterase family Y89_0371 PF00186 Dihydrofolate reductase Y89_0372 PF12850 Calcineurin-like phosphoesterase superfamily domain Y89_0373 PF00860 Permease family Y89_0374 PF00920 Dehydratase family Y89_0375 PF10672 S-adenosylmethionine-dependent methyltransferase Y89_0376 PF01965 DJ-1/PfpI family Y89_0377 PF08668 HDOD domain Y89_0378 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Y89_0378 PF06827 Zinc finger found in FPG and IleRS Y89_0378 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Y89_0379 PF01553 Acyltransferase Y89_0381 PF08238 Sel1 repeat Y89_0382 PF01019 Gamma-glutamyltranspeptidase Y89_0383 PF00037 4Fe-4S binding domain Y89_0384 PF01467 Cytidylyltransferase Y89_0385 PF00732 GMC oxidoreductase Y89_0385 PF05199 GMC oxidoreductase Y89_0387 PF00171 Aldehyde dehydrogenase family Y89_0388 PF00440 Bacterial regulatory proteins, tetR family Y89_0388 PF13972 Bacterial transcriptional repressor Y89_0389 PF00583 Acetyltransferase (GNAT) family Y89_0390 PF00561 alpha/beta hydrolase fold Y89_0392 PF03602 Conserved hypothetical protein 95 Y89_0393 PF00675 Insulinase (Peptidase family M16) Y89_0393 PF05193 Peptidase M16 inactive domain Y89_0394 PF00675 Insulinase (Peptidase family M16) Y89_0394 PF05193 Peptidase M16 inactive domain Y89_0395 PF00448 SRP54-type protein, GTPase domain Y89_0395 PF02881 SRP54-type protein, helical bundle domain Y89_0396 PF00005 ABC transporter Y89_0398 PF00140 Sigma-70 factor, region 1 Y89_0398 PF04542 Sigma-70 region 2 Y89_0398 PF04545 Sigma-70, region 4 Y89_0400 PF00912 Transglycosylase Y89_0401 PF04241 Y89_0401 Y89_0402 PF02597 ThiS family Y89_0403 PF05690 Thiazole biosynthesis protein ThiG Y89_0404 PF02390 Putative methyltransferase Y89_0405 PF07044 Protein of unknown function (DUF1329) Y89_0407 PF11872 Y89_0407 Y89_0408 PF04055 Radical SAM superfamily Y89_0408 PF06969 HemN C-terminal domain Y89_0409 PF01725 Ham1 family Y89_0410 PF14467 Domain of unknown function (DUF4426) Y89_0411 PF07021 Methionine biosynthesis protein MetW Y89_0412 PF00561 alpha/beta hydrolase fold Y89_0413 PF00350 Dynamin family Y89_0414 PF02594 Uncharacterised ACR, YggU family COG1872 Y89_0415 PF02325 Y89_0415 Y89_0416 PF03807 NADP oxidoreductase coenzyme F420-dependent Y89_0416 PF14748 Pyrroline-5-carboxylate reductase dimerisation Y89_0417 PF01168 Alanine racemase, N-terminal domain Y89_0418 PF00437 Type II/IV secretion system protein Y89_0419 PF00437 Type II/IV secretion system protein Y89_0420 PF01545 Cation efflux family Y89_0421 PF05154 Y89_0421 Y89_0422 PF00291 Pyridoxal-phosphate dependent enzyme Y89_0422 PF00571 CBS domain Y89_0423 PF01053 Cys/Met metabolism PLP-dependent enzyme Y89_0424 PF01979 Amidohydrolase family Y89_0425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Y89_0425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Y89_0426 PF00156 Phosphoribosyl transferase domain Y89_0427 PF03652 Uncharacterised protein family (UPF0081) Y89_0428 PF02622 Uncharacterized ACR, COG1678 Y89_0429 PF03544 Gram-negative bacterial TonB protein C-terminal Y89_0430 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Y89_0430 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Y89_0431 PF00072 Response regulator receiver domain Y89_0433 PF01584 CheW-like domain Y89_0434 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_0434 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Y89_0435 PF01739 CheR methyltransferase, SAM binding domain Y89_0435 PF03705 CheR methyltransferase, all-alpha domain Y89_0436 PF00072 Response regulator receiver domain Y89_0436 PF01584 CheW-like domain Y89_0436 PF01627 Hpt domain Y89_0436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0437 PF01339 CheB methylesterase Y89_0438 PF01584 CheW-like domain Y89_0439 PF02311 AraC-like ligand binding domain Y89_0439 PF12833 Helix-turn-helix domain Y89_0440 PF01810 Y89_0440 Y89_0442 PF04452 RNA methyltransferase Y89_0443 PF00202 Aminotransferase class-III Y89_0444 PF01593 Flavin containing amine oxidoreductase Y89_0445 PF01292 Prokaryotic cytochrome b561 Y89_0446 PF04264 YceI-like domain Y89_0447 PF01047 MarR family Y89_0448 PF00529 HlyD family secretion protein Y89_0448 PF16576 Y89_0448 Y89_0449 PF00873 AcrB/AcrD/AcrF family Y89_0450 PF02321 Outer membrane efflux protein Y89_0451 PF00270 DEAD/DEAH box helicase Y89_0451 PF00271 Helicase conserved C-terminal domain Y89_0453 PF02219 Methylenetetrahydrofolate reductase Y89_0455 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Y89_0455 PF05221 S-adenosyl-L-homocysteine hydrolase Y89_0456 PF11162 Y89_0456 Y89_0457 PF00593 TonB dependent receptor Y89_0457 PF07715 TonB-dependent Receptor Plug Domain Y89_0458 PF03929 Y89_0458 Y89_0459 PF00440 Bacterial regulatory proteins, tetR family Y89_0459 PF08362 YcdC-like protein, C-terminal region Y89_0460 PF07969 Amidohydrolase family Y89_0461 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y89_0462 PF01180 Dihydroorotate dehydrogenase Y89_0462 PF14697 4Fe-4S dicluster domain Y89_0463 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_0463 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Y89_0464 PF01979 Amidohydrolase family Y89_0465 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y89_0466 PF01546 Peptidase family M20/M25/M40 Y89_0466 PF07687 Peptidase dimerisation domain Y89_0467 PF02515 CoA-transferase family III Y89_0468 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_0468 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_0468 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_0469 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0469 PF03466 LysR substrate binding domain Y89_0470 PF03061 Thioesterase superfamily Y89_0471 PF01384 Y89_0471 Y89_0472 PF01957 NfeD-like C-terminal, partner-binding Y89_0473 PF01145 SPFH domain / Band 7 family Y89_0474 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_0475 PF12805 Y89_0475 Y89_0475 PF13515 Y89_0475 Y89_0476 PF00270 DEAD/DEAH box helicase Y89_0476 PF00271 Helicase conserved C-terminal domain Y89_0476 PF03880 DbpA RNA binding domain Y89_0477 PF00313 'Cold-shock' DNA-binding domain Y89_0478 PF05618 Putative ATP-dependant zinc protease Y89_0479 PF07690 Major Facilitator Superfamily Y89_0480 PF00004 ATPase family associated with various cellular activities (AAA) Y89_0480 PF02861 Clp amino terminal domain Y89_0480 PF07724 AAA domain (Cdc48 subfamily) Y89_0480 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_0481 PF11075 Y89_0481 Y89_0482 PF01553 Acyltransferase Y89_0483 PF05618 Putative ATP-dependant zinc protease Y89_0484 PF00072 Response regulator receiver domain Y89_0484 PF00486 Transcriptional regulatory protein, C terminal Y89_0485 PF00512 His Kinase A (phospho-acceptor) domain Y89_0485 PF00672 HAMP domain Y89_0485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0486 PF06123 Y89_0486 Y89_0488 PF13410 Glutathione S-transferase, C-terminal domain Y89_0488 PF13417 Glutathione S-transferase, N-terminal domain Y89_0490 PF13672 Protein phosphatase 2C Y89_0491 PF00593 TonB dependent receptor Y89_0491 PF07715 TonB-dependent Receptor Plug Domain Y89_0492 PF04773 FecR protein Y89_0492 PF16220 Y89_0492 Y89_0493 PF04542 Sigma-70 region 2 Y89_0493 PF08281 Sigma-70, region 4 Y89_0494 PF13417 Glutathione S-transferase, N-terminal domain Y89_0495 PF03061 Thioesterase superfamily Y89_0496 PF00440 Bacterial regulatory proteins, tetR family Y89_0497 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y89_0498 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0498 PF03466 LysR substrate binding domain Y89_0499 PF00583 Acetyltransferase (GNAT) family Y89_0500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0500 PF03466 LysR substrate binding domain Y89_0501 PF00561 alpha/beta hydrolase fold Y89_0504 PF01274 Malate synthase Y89_0505 PF00583 Acetyltransferase (GNAT) family Y89_0506 PF01842 ACT domain Y89_0506 PF13740 ACT domain Y89_0507 PF00892 EamA-like transporter family Y89_0508 PF01636 Phosphotransferase enzyme family Y89_0509 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0509 PF03459 TOBE domain Y89_0510 PF10043 Y89_0510 Y89_0511 PF00156 Phosphoribosyl transferase domain Y89_0513 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0513 PF03466 LysR substrate binding domain Y89_0514 PF03746 LamB/YcsF family Y89_0515 PF00364 Biotin-requiring enzyme Y89_0516 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Y89_0516 PF02785 Biotin carboxylase C-terminal domain Y89_0516 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_0517 PF02682 Allophanate hydrolase subunit 1 Y89_0518 PF02626 Allophanate hydrolase subunit 2 Y89_0519 PF00419 Fimbrial protein Y89_0520 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y89_0520 PF02753 Pili assembly chaperone PapD, C-terminal domain Y89_0521 PF04055 Radical SAM superfamily Y89_0521 PF06968 Biotin and Thiamin Synthesis associated domain Y89_0522 PF00155 Aminotransferase class I and II Y89_0523 PF12697 Alpha/beta hydrolase family Y89_0524 PF08241 Methyltransferase domain Y89_0525 PF13500 AAA domain Y89_0527 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_0527 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_0527 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_0527 PF12418 Y89_0527 Y89_0527 PF12806 Y89_0527 Y89_0528 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_0528 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_0528 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_0528 PF12418 Y89_0528 Y89_0528 PF12806 Y89_0528 Y89_0529 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_0529 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_0529 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_0529 PF12418 Y89_0529 Y89_0529 PF12806 Y89_0529 Y89_0530 PF02239 Cytochrome D1 heme domain Y89_0530 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_0531 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_0532 PF04055 Radical SAM superfamily Y89_0532 PF13353 4Fe-4S single cluster domain Y89_0536 PF13404 AsnC-type helix-turn-helix domain Y89_0537 PF02239 Cytochrome D1 heme domain Y89_0538 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_0539 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_0540 PF02239 Cytochrome D1 heme domain Y89_0540 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_0541 PF07728 AAA domain (dynein-related subfamily) Y89_0541 PF08406 Y89_0541 Y89_0542 PF00510 Cytochrome c oxidase subunit III Y89_0543 PF03626 Y89_0543 Y89_0544 PF00034 Cytochrome c Y89_0548 PF00027 Cyclic nucleotide-binding domain Y89_0548 PF13545 Crp-like helix-turn-helix domain Y89_0549 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0549 PF03466 LysR substrate binding domain Y89_0550 PF03473 MOSC domain Y89_0550 PF03475 3-alpha domain Y89_0552 PF00202 Aminotransferase class-III Y89_0553 PF00117 Glutamine amidotransferase class-I Y89_0555 PF00196 Bacterial regulatory proteins, luxR family Y89_0555 PF13188 PAS domain Y89_0555 PF13426 PAS domain Y89_0556 PF01266 FAD dependent oxidoreductase Y89_0557 PF01381 Helix-turn-helix Y89_0557 PF07883 Cupin domain Y89_0558 PF04536 TLP18 Y89_0559 PF04011 LemA family Y89_0560 PF02600 Disulfide bond formation protein DsbB Y89_0561 PF00892 EamA-like transporter family Y89_0562 PF01124 MAPEG family Y89_0563 PF01322 Cytochrome C' Y89_0564 PF06476 Y89_0564 Y89_0565 PF10503 Esterase PHB depolymerase Y89_0566 PF00149 Calcineurin-like phosphoesterase Y89_0567 PF00175 Oxidoreductase NAD-binding domain Y89_0567 PF01794 Y89_0567 Y89_0567 PF08022 Y89_0567 Y89_0568 PF00438 S-adenosylmethionine synthetase, N-terminal domain Y89_0568 PF02772 S-adenosylmethionine synthetase, central domain Y89_0568 PF02773 S-adenosylmethionine synthetase, C-terminal domain Y89_0569 PF12840 Helix-turn-helix domain Y89_0569 PF13489 Methyltransferase domain Y89_0570 PF00456 Transketolase, thiamine diphosphate binding domain Y89_0570 PF02779 Transketolase, pyrimidine binding domain Y89_0570 PF02780 Transketolase, C-terminal domain Y89_0572 PF01261 Xylose isomerase-like TIM barrel Y89_0573 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y89_0573 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Y89_0574 PF00162 Phosphoglycerate kinase Y89_0576 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme Y89_0577 PF01116 Fructose-bisphosphate aldolase class-II Y89_0579 PF13474 SnoaL-like domain Y89_0580 PF08241 Methyltransferase domain Y89_0581 PF03486 HI0933-like protein Y89_0583 PF13419 Haloacid dehalogenase-like hydrolase Y89_0584 PF05656 Y89_0584 Y89_0585 PF02311 AraC-like ligand binding domain Y89_0585 PF12833 Helix-turn-helix domain Y89_0586 PF02627 Carboxymuconolactone decarboxylase family Y89_0588 PF01679 Y89_0588 Y89_0591 PF09346 SMI1 / KNR4 family (SUKH-1) Y89_0592 PF14300 Domain of unknown function (DUF4375) Y89_0593 PF13402 Peptidase M60-like family Y89_0594 PF08378 Y89_0594 Y89_0595 PF02661 Fic/DOC family Y89_0595 PF13776 Y89_0595 Y89_0596 PF00004 ATPase family associated with various cellular activities (AAA) Y89_0597 PF00082 Subtilase family Y89_0599 PF13175 AAA ATPase domain Y89_0601 PF00665 Integrase core domain Y89_0601 PF13936 Helix-turn-helix domain Y89_0602 PF00665 Integrase core domain Y89_0602 PF13276 Y89_0602 Y89_0607 PF07927 YcfA-like protein Y89_0608 PF15919 Y89_0608 Y89_0614 PF07484 Phage Tail Collar Domain Y89_0614 PF12571 Y89_0614 Y89_0615 PF09684 Y89_0615 Y89_0616 PF04865 Y89_0616 Y89_0617 PF10761 Y89_0617 Y89_0618 PF10145 Y89_0618 Y89_0619 PF10963 Y89_0619 Y89_0620 PF03245 Y89_0620 Y89_0621 PF00959 Phage lysozyme Y89_0623 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y89_0624 PF10772 Y89_0624 Y89_0625 PF10758 Y89_0625 Y89_0627 PF06891 Y89_0627 Y89_0628 PF05926 Y89_0628 Y89_0629 PF05944 Y89_0629 Y89_0630 PF05125 Y89_0630 Y89_0631 PF05929 Y89_0631 Y89_0632 PF03237 Terminase-like family Y89_0632 PF06056 Putative ATPase subunit of terminase (gpP-like) Y89_0632 PF17289 Y89_0632 Y89_0637 PF03869 Arc-like DNA binding domain Y89_0642 PF13155 Toprim-like Y89_0644 PF01381 Helix-turn-helix Y89_0646 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Y89_0646 PF01844 HNH endonuclease Y89_0646 PF08388 Y89_0646 Y89_0646 PF13655 Y89_0646 Y89_0647 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_0647 PF00563 EAL domain Y89_0647 PF00990 GGDEF domain Y89_0647 PF08447 PAS fold Y89_0647 PF13426 PAS domain Y89_0648 PF00140 Sigma-70 factor, region 1 Y89_0648 PF03979 Sigma-70 factor, region 1 Y89_0648 PF04539 Sigma-70 region 3 Y89_0648 PF04542 Sigma-70 region 2 Y89_0648 PF04545 Sigma-70, region 4 Y89_0648 PF04546 Sigma-70, non-essential region Y89_0649 PF01807 CHC2 zinc finger Y89_0649 PF08275 DNA primase catalytic core, N-terminal domain Y89_0649 PF08278 DNA primase DnaG DnaB-binding Y89_0649 PF10410 DnaB-helicase binding domain of primase Y89_0649 PF13662 Toprim domain Y89_0650 PF09424 Yqey-like protein Y89_0651 PF01165 Ribosomal protein S21 Y89_0652 PF00814 Glycoprotease family Y89_0653 PF02660 Y89_0653 Y89_0654 PF02152 Dihydroneopterin aldolase Y89_0655 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Y89_0656 PF01743 Poly A polymerase head domain Y89_0656 PF01966 HD domain Y89_0656 PF12627 Probable RNA and SrmB- binding site of polymerase A Y89_0657 PF13590 Domain of unknown function (DUF4136) Y89_0658 PF04293 Y89_0658 Y89_0659 PF04285 Y89_0659 Y89_0660 PF06798 Y89_0660 Y89_0660 PF08298 PrkA AAA domain Y89_0661 PF00581 Rhodanese-like domain Y89_0662 PF00149 Calcineurin-like phosphoesterase Y89_0663 PF04379 Protein of unknown function (DUF525) Y89_0664 PF00398 Ribosomal RNA adenine dimethylase Y89_0665 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Y89_0666 PF00639 PPIC-type PPIASE domain Y89_0666 PF09312 SurA N-terminal domain Y89_0666 PF13616 PPIC-type PPIASE domain Y89_0667 PF03968 OstA-like protein Y89_0667 PF04453 Organic solvent tolerance protein Y89_0668 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Y89_0668 PF01844 HNH endonuclease Y89_0668 PF08388 Y89_0668 Y89_0670 PF01636 Phosphotransferase enzyme family Y89_0671 PF00483 Nucleotidyl transferase Y89_0672 PF00226 DnaJ domain Y89_0673 PF12048 Y89_0673 Y89_0674 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_0674 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0674 PF07730 Histidine kinase Y89_0674 PF08447 PAS fold Y89_0674 PF08448 PAS fold Y89_0675 PF00072 Response regulator receiver domain Y89_0675 PF00196 Bacterial regulatory proteins, luxR family Y89_0676 PF13416 Bacterial extracellular solute-binding protein Y89_0677 PF00005 ABC transporter Y89_0677 PF08402 TOBE domain Y89_0678 PF13416 Bacterial extracellular solute-binding protein Y89_0679 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0680 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0681 PF00834 Ribulose-phosphate 3 epimerase family Y89_0682 PF13419 Haloacid dehalogenase-like hydrolase Y89_0683 PF00425 chorismate binding enzyme Y89_0683 PF04715 Anthranilate synthase component I, N terminal region Y89_0684 PF11112 Y89_0684 Y89_0685 PF00717 Peptidase S24-like Y89_0685 PF01381 Helix-turn-helix Y89_0689 PF16085 Y89_0689 Y89_0691 PF04717 Phage-related baseplate assembly protein Y89_0692 PF04965 Gene 25-like lysozyme Y89_0693 PF04865 Y89_0693 Y89_0694 PF09684 Y89_0694 Y89_0695 PF12571 Y89_0695 Y89_0696 PF04984 Phage tail sheath protein Y89_0696 PF17482 Y89_0696 Y89_0697 PF04985 Y89_0697 Y89_0698 PF10109 Y89_0698 Y89_0700 PF06995 Y89_0700 Y89_0701 PF05489 Phage Tail Protein X Y89_0702 PF05954 Phage late control gene D protein (GPD) Y89_0703 PF00182 Chitinase class I Y89_0706 PF16460 Y89_0706 Y89_0707 PF16459 Y89_0707 Y89_0709 PF09718 Y89_0709 Y89_0710 PF05939 Y89_0710 Y89_0711 PF05100 Y89_0711 Y89_0712 PF00877 NlpC/P60 family Y89_0712 PF14464 Prokaryotic homologs of the JAB domain Y89_0714 PF09327 Y89_0714 Y89_0714 PF13550 Y89_0714 Y89_0722 PF00117 Glutamine amidotransferase class-I Y89_0723 PF00591 Glycosyl transferase family, a/b domain Y89_0723 PF02885 Glycosyl transferase family, helical bundle domain Y89_0724 PF00218 Indole-3-glycerol phosphate synthase Y89_0725 PF00027 Cyclic nucleotide-binding domain Y89_0725 PF00325 Bacterial regulatory proteins, crp family Y89_0726 PF02566 OsmC-like protein Y89_0727 PF02675 S-adenosylmethionine decarboxylase Y89_0728 PF03232 Y89_0728 Y89_0729 PF01230 HIT domain Y89_0730 PF00004 ATPase family associated with various cellular activities (AAA) Y89_0731 PF00106 short chain dehydrogenase Y89_0732 PF05656 Y89_0732 Y89_0733 PF03060 Nitronate monooxygenase Y89_0734 PF03653 Y89_0734 Y89_0735 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y89_0735 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y89_0737 PF04519 Y89_0737 Y89_0738 PF01521 Iron-sulphur cluster biosynthesis Y89_0739 PF03702 Uncharacterised protein family (UPF0075) Y89_0740 PF01551 Peptidase family M23 Y89_0740 PF04225 Opacity-associated protein A LysM-like domain Y89_0741 PF00579 tRNA synthetases class I (W and Y) Y89_0742 PF03099 Biotin/lipoate A/B protein ligase family Y89_0742 PF08279 HTH domain Y89_0743 PF03309 Type III pantothenate kinase Y89_0744 PF05036 Sporulation related domain Y89_0745 PF00009 Elongation factor Tu GTP binding domain Y89_0745 PF03143 Elongation factor Tu C-terminal domain Y89_0745 PF03144 Elongation factor Tu domain 2 Y89_0747 PF00467 KOW motif Y89_0747 PF02357 Transcription termination factor nusG Y89_0748 PF00298 Ribosomal protein L11, RNA binding domain Y89_0748 PF03946 Ribosomal protein L11, N-terminal domain Y89_0749 PF00687 Ribosomal protein L1p/L10e family Y89_0750 PF00466 Ribosomal protein L10 Y89_0751 PF00542 Ribosomal protein L7/L12 C-terminal domain Y89_0751 PF16320 Y89_0751 Y89_0752 PF00562 RNA polymerase Rpb2, domain 6 Y89_0752 PF04560 RNA polymerase Rpb2, domain 7 Y89_0752 PF04561 RNA polymerase Rpb2, domain 2 Y89_0752 PF04563 RNA polymerase beta subunit Y89_0752 PF04565 RNA polymerase Rpb2, domain 3 Y89_0752 PF10385 RNA polymerase beta subunit external 1 domain Y89_0753 PF00623 RNA polymerase Rpb1, domain 2 Y89_0753 PF04983 RNA polymerase Rpb1, domain 3 Y89_0753 PF04997 RNA polymerase Rpb1, domain 1 Y89_0753 PF04998 RNA polymerase Rpb1, domain 5 Y89_0753 PF05000 RNA polymerase Rpb1, domain 4 Y89_0754 PF00164 Ribosomal protein S12/S23 Y89_0755 PF00177 Ribosomal protein S7p/S5e Y89_0756 PF00009 Elongation factor Tu GTP binding domain Y89_0756 PF00679 Elongation factor G C-terminus Y89_0756 PF03144 Elongation factor Tu domain 2 Y89_0756 PF03764 Elongation factor G, domain IV Y89_0756 PF14492 Elongation Factor G, domain II Y89_0757 PF00009 Elongation factor Tu GTP binding domain Y89_0757 PF03143 Elongation factor Tu C-terminal domain Y89_0757 PF03144 Elongation factor Tu domain 2 Y89_0758 PF00338 Ribosomal protein S10p/S20e Y89_0759 PF00297 Ribosomal protein L3 Y89_0760 PF00573 Ribosomal protein L4/L1 family Y89_0761 PF00276 Ribosomal protein L23 Y89_0762 PF00181 Ribosomal Proteins L2, RNA binding domain Y89_0762 PF03947 Ribosomal Proteins L2, C-terminal domain Y89_0763 PF00203 Ribosomal protein S19 Y89_0764 PF00237 Ribosomal protein L22p/L17e Y89_0765 PF00189 Ribosomal protein S3, C-terminal domain Y89_0765 PF07650 KH domain Y89_0766 PF00252 Ribosomal protein L16p/L10e Y89_0767 PF00831 Ribosomal L29 protein Y89_0768 PF00366 Ribosomal protein S17 Y89_0769 PF00238 Ribosomal protein L14p/L23e Y89_0770 PF00467 KOW motif Y89_0770 PF17136 Y89_0770 Y89_0771 PF00281 Ribosomal protein L5 Y89_0771 PF00673 ribosomal L5P family C-terminus Y89_0772 PF00253 Ribosomal protein S14p/S29e Y89_0773 PF00410 Ribosomal protein S8 Y89_0774 PF00347 Ribosomal protein L6 Y89_0775 PF00861 Ribosomal L18p/L5e family Y89_0776 PF00333 Ribosomal protein S5, N-terminal domain Y89_0776 PF03719 Ribosomal protein S5, C-terminal domain Y89_0777 PF00327 Ribosomal protein L30p/L7e Y89_0778 PF00828 Ribosomal protein L18e/L15 Y89_0779 PF00344 SecY translocase Y89_0780 PF00444 Ribosomal protein L36 Y89_0781 PF00416 Ribosomal protein S13/S18 Y89_0782 PF00411 Ribosomal protein S11 Y89_0783 PF00163 Ribosomal protein S4/S9 N-terminal domain Y89_0783 PF01479 S4 domain Y89_0784 PF01000 RNA polymerase Rpb3/RpoA insert domain Y89_0784 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Y89_0784 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Y89_0785 PF01196 Ribosomal protein L17 Y89_0786 PF00199 Catalase Y89_0786 PF06628 Catalase-related immune-responsive Y89_0787 PF00210 Ferritin-like domain Y89_0789 PF07690 Major Facilitator Superfamily Y89_0790 PF00436 Single-strand binding protein family Y89_0791 PF00425 chorismate binding enzyme Y89_0792 PF01817 Chorismate mutase type II Y89_0793 PF00975 Thioesterase domain Y89_0794 PF00501 AMP-binding enzyme Y89_0794 PF13193 AMP-binding enzyme C-terminal domain Y89_0795 PF12833 Helix-turn-helix domain Y89_0796 PF00501 AMP-binding enzyme Y89_0796 PF00550 Phosphopantetheine attachment site Y89_0796 PF00668 Condensation domain Y89_0797 PF00501 AMP-binding enzyme Y89_0797 PF00550 Phosphopantetheine attachment site Y89_0797 PF00668 Condensation domain Y89_0797 PF08242 Methyltransferase domain Y89_0798 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y89_0799 PF00005 ABC transporter Y89_0799 PF00664 ABC transporter transmembrane region Y89_0800 PF00005 ABC transporter Y89_0801 PF00593 TonB dependent receptor Y89_0801 PF07715 TonB-dependent Receptor Plug Domain Y89_0803 PF03929 Y89_0803 Y89_0804 PF13000 Y89_0804 Y89_0805 PF01494 FAD binding domain Y89_0806 PF01243 Pyridoxamine 5'-phosphate oxidase Y89_0806 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Y89_0807 PF02567 Phenazine biosynthesis-like protein Y89_0808 PF00117 Glutamine amidotransferase class-I Y89_0808 PF00425 chorismate binding enzyme Y89_0809 PF00857 Isochorismatase family Y89_0810 PF01474 Class-II DAHP synthetase family Y89_0811 PF03284 Phenazine biosynthesis protein A/B Y89_0812 PF03284 Phenazine biosynthesis protein A/B Y89_0813 PF00891 O-methyltransferase Y89_0813 PF16864 Y89_0813 Y89_0814 PF02321 Outer membrane efflux protein Y89_0815 PF00873 AcrB/AcrD/AcrF family Y89_0816 PF16576 Y89_0816 Y89_0817 PF07681 Y89_0817 Y89_0818 PF10282 Lactonase, 7-bladed beta-propeller Y89_0819 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0819 PF03466 LysR substrate binding domain Y89_0820 PF03060 Nitronate monooxygenase Y89_0821 PF01820 D-ala D-ala ligase N-terminus Y89_0821 PF07478 D-ala D-ala ligase C-terminus Y89_0822 PF00753 Metallo-beta-lactamase superfamily Y89_0823 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_0823 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_0823 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_0823 PF12418 Y89_0823 Y89_0823 PF12806 Y89_0823 Y89_0824 PF00501 AMP-binding enzyme Y89_0824 PF13193 AMP-binding enzyme C-terminal domain Y89_0825 PF00512 His Kinase A (phospho-acceptor) domain Y89_0825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0825 PF08447 PAS fold Y89_0826 PF00072 Response regulator receiver domain Y89_0826 PF00196 Bacterial regulatory proteins, luxR family Y89_0827 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_0828 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0829 PF00528 Binding-protein-dependent transport system inner membrane component Y89_0830 PF00005 ABC transporter Y89_0831 PF03171 2OG-Fe(II) oxygenase superfamily Y89_0831 PF14226 non-haem dioxygenase in morphine synthesis N-terminal Y89_0832 PF01494 FAD binding domain Y89_0833 PF00171 Aldehyde dehydrogenase family Y89_0834 PF00701 Dihydrodipicolinate synthetase family Y89_0835 PF00083 Sugar (and other) transporter Y89_0836 PF01266 FAD dependent oxidoreductase Y89_0837 PF00392 Bacterial regulatory proteins, gntR family Y89_0837 PF07729 FCD domain Y89_0838 PF01965 DJ-1/PfpI family Y89_0838 PF12833 Helix-turn-helix domain Y89_0840 PF04299 Putative FMN-binding domain Y89_0841 PF03483 B3/4 domain Y89_0842 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_0842 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_0842 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_0843 PF03573 outer membrane porin, OprD family Y89_0844 PF13649 Methyltransferase domain Y89_0845 PF04828 Glutathione-dependent formaldehyde-activating enzyme Y89_0846 PF13616 PPIC-type PPIASE domain Y89_0848 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0848 PF03466 LysR substrate binding domain Y89_0849 PF01042 Endoribonuclease L-PSP Y89_0850 PF03372 Endonuclease/Exonuclease/phosphatase family Y89_0851 PF01965 DJ-1/PfpI family Y89_0852 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_0853 PF02082 Transcriptional regulator Y89_0854 PF00593 TonB dependent receptor Y89_0854 PF07715 TonB-dependent Receptor Plug Domain Y89_0855 PF00248 Aldo/keto reductase family Y89_0856 PF00583 Acetyltransferase (GNAT) family Y89_0857 PF00155 Aminotransferase class I and II Y89_0857 PF00392 Bacterial regulatory proteins, gntR family Y89_0858 PF06094 AIG2-like family Y89_0859 PF01425 Amidase Y89_0860 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_0861 PF01032 FecCD transport family Y89_0862 PF01032 FecCD transport family Y89_0863 PF01497 Periplasmic binding protein Y89_0864 PF00005 ABC transporter Y89_0865 PF01614 Bacterial transcriptional regulator Y89_0865 PF09339 IclR helix-turn-helix domain Y89_0866 PF00593 TonB dependent receptor Y89_0866 PF07715 TonB-dependent Receptor Plug Domain Y89_0867 PF00296 Luciferase-like monooxygenase Y89_0868 PF08239 Bacterial SH3 domain Y89_0869 PF00107 Zinc-binding dehydrogenase Y89_0869 PF08240 Alcohol dehydrogenase GroES-like domain Y89_0869 PF13823 Alcohol dehydrogenase GroES-associated Y89_0870 PF00364 Biotin-requiring enzyme Y89_0870 PF00561 alpha/beta hydrolase fold Y89_0871 PF02779 Transketolase, pyrimidine binding domain Y89_0871 PF02780 Transketolase, C-terminal domain Y89_0873 PF01513 ATP-NAD kinase Y89_0874 PF00106 short chain dehydrogenase Y89_0875 PF00158 Sigma-54 interaction domain Y89_0875 PF01590 GAF domain Y89_0875 PF02954 Bacterial regulatory protein, Fis family Y89_0876 PF01810 Y89_0876 Y89_0877 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0877 PF03466 LysR substrate binding domain Y89_0878 PF02321 Outer membrane efflux protein Y89_0879 PF00005 ABC transporter Y89_0879 PF00664 ABC transporter transmembrane region Y89_0879 PF03412 Peptidase C39 family Y89_0880 PF13437 HlyD family secretion protein Y89_0882 PF01565 FAD binding domain Y89_0882 PF09129 Cholesterol oxidase, substrate-binding Y89_0884 PF00579 tRNA synthetases class I (W and Y) Y89_0885 PF03573 outer membrane porin, OprD family Y89_0886 PF07690 Major Facilitator Superfamily Y89_0887 PF01047 MarR family Y89_0889 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y89_0890 PF00155 Aminotransferase class I and II Y89_0890 PF00392 Bacterial regulatory proteins, gntR family Y89_0891 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Y89_0891 PF12801 Y89_0891 Y89_0891 PF13746 4Fe-4S dicluster domain Y89_0892 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y89_0892 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y89_0893 PF06073 Y89_0893 Y89_0894 PF03328 HpcH/HpaI aldolase/citrate lyase family Y89_0895 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_0896 PF07690 Major Facilitator Superfamily Y89_0897 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase Y89_0898 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Y89_0899 PF00171 Aldehyde dehydrogenase family Y89_0900 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_0901 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_0902 PF02311 AraC-like ligand binding domain Y89_0902 PF12833 Helix-turn-helix domain Y89_0903 PF01636 Phosphotransferase enzyme family Y89_0905 PF00360 Phytochrome region Y89_0905 PF00512 His Kinase A (phospho-acceptor) domain Y89_0905 PF01590 GAF domain Y89_0905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0905 PF08446 PAS fold Y89_0906 PF01126 Heme oxygenase Y89_0907 PF03641 Possible lysine decarboxylase Y89_0907 PF11892 Domain of unknown function (DUF3412) Y89_0907 PF14793 Domain of unknown function (DUF4478) Y89_0908 PF00583 Acetyltransferase (GNAT) family Y89_0909 PF07690 Major Facilitator Superfamily Y89_0910 PF00072 Response regulator receiver domain Y89_0910 PF00512 His Kinase A (phospho-acceptor) domain Y89_0910 PF00989 PAS fold Y89_0910 PF01627 Hpt domain Y89_0910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0910 PF03924 CHASE domain Y89_0910 PF08447 PAS fold Y89_0910 PF13426 PAS domain Y89_0912 PF00144 Beta-lactamase Y89_0913 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_0913 PF03466 LysR substrate binding domain Y89_0915 PF01966 HD domain Y89_0915 PF11871 Y89_0915 Y89_0916 PF13202 EF hand Y89_0917 PF05114 Protein of unknown function (DUF692) Y89_0918 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) Y89_0919 PF07681 Y89_0919 Y89_0920 PF01794 Y89_0920 Y89_0921 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0922 PF00072 Response regulator receiver domain Y89_0922 PF00486 Transcriptional regulatory protein, C terminal Y89_0923 PF10976 Protein of unknown function (DUF2790) Y89_0924 PF00732 GMC oxidoreductase Y89_0924 PF05199 GMC oxidoreductase Y89_0925 PF04966 Carbohydrate-selective porin, OprB family Y89_0926 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_0927 PF00107 Zinc-binding dehydrogenase Y89_0927 PF08240 Alcohol dehydrogenase GroES-like domain Y89_0928 PF07690 Major Facilitator Superfamily Y89_0929 PF07883 Cupin domain Y89_0930 PF12833 Helix-turn-helix domain Y89_0930 PF14525 Y89_0930 Y89_0931 PF03061 Thioesterase superfamily Y89_0932 PF01613 Flavin reductase like domain Y89_0933 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal Y89_0933 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal Y89_0934 PF09981 Uncharacterized protein conserved in bacteria (DUF2218) Y89_0935 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_0936 PF00202 Aminotransferase class-III Y89_0937 PF10703 Molybdenum cofactor biosynthesis protein F Y89_0937 PF17409 Y89_0937 Y89_0939 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y89_0939 PF02753 Pili assembly chaperone PapD, C-terminal domain Y89_0940 PF00577 Outer membrane usher protein Y89_0940 PF13953 PapC C-terminal domain Y89_0940 PF13954 PapC N-terminal domain Y89_0941 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y89_0941 PF02753 Pili assembly chaperone PapD, C-terminal domain Y89_0942 PF05860 haemagglutination activity domain Y89_0942 PF07581 Y89_0942 Y89_0942 PF13018 Y89_0942 Y89_0943 PF00419 Fimbrial protein Y89_0944 PF00072 Response regulator receiver domain Y89_0944 PF00196 Bacterial regulatory proteins, luxR family Y89_0945 PF00106 short chain dehydrogenase Y89_0946 PF00501 AMP-binding enzyme Y89_0946 PF00550 Phosphopantetheine attachment site Y89_0946 PF07993 Male sterility protein Y89_0946 PF13193 AMP-binding enzyme C-terminal domain Y89_0947 PF01381 Helix-turn-helix Y89_0950 PF00196 Bacterial regulatory proteins, luxR family Y89_0951 PF00171 Aldehyde dehydrogenase family Y89_0952 PF13520 Amino acid permease Y89_0953 PF11354 Y89_0953 Y89_0954 PF12833 Helix-turn-helix domain Y89_0954 PF14525 Y89_0954 Y89_0955 PF04321 RmlD substrate binding domain Y89_0956 PF01370 NAD dependent epimerase/dehydratase family Y89_0957 PF04247 Y89_0957 Y89_0958 PF03922 OmpW family Y89_0959 PF11736 Protein of unknown function (DUF3299) Y89_0960 PF02687 Y89_0960 Y89_0960 PF12704 MacB-like periplasmic core domain Y89_0961 PF00005 ABC transporter Y89_0962 PF10986 Y89_0962 Y89_0964 PF00085 Thioredoxin Y89_0964 PF14559 Tetratricopeptide repeat Y89_0964 PF14561 Tetratricopeptide repeat Y89_0965 PF06325 Ribosomal protein L11 methyltransferase (PrmA) Y89_0966 PF09619 Type III secretion system lipoprotein chaperone (YscW) Y89_0967 PF03477 ATP cone domain Y89_0968 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Y89_0968 PF01872 RibD C-terminal domain Y89_0969 PF00677 Lumazine binding domain Y89_0970 PF00925 GTP cyclohydrolase II Y89_0970 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Y89_0971 PF00885 6,7-dimethyl-8-ribityllumazine synthase Y89_0972 PF01029 NusB family Y89_0973 PF00586 AIR synthase related protein, N-terminal domain Y89_0973 PF02769 AIR synthase related protein, C-terminal domain Y89_0974 PF04608 Phosphatidylglycerophosphatase A Y89_0975 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_0976 PF13975 Y89_0976 Y89_0977 PF00925 GTP cyclohydrolase II Y89_0979 PF01497 Periplasmic binding protein Y89_0980 PF02779 Transketolase, pyrimidine binding domain Y89_0980 PF02780 Transketolase, C-terminal domain Y89_0980 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Y89_0981 PF00348 Polyprenyl synthetase Y89_0982 PF02609 Exonuclease VII small subunit Y89_0983 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Y89_0983 PF13378 Enolase C-terminal domain-like Y89_0984 PF14238 Y89_0984 Y89_0985 PF09822 Y89_0985 Y89_0986 PF12698 ABC-2 family transporter protein Y89_0987 PF00005 ABC transporter Y89_0988 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_0988 PF05226 Y89_0988 Y89_0988 PF08448 PAS fold Y89_0989 PF04773 FecR protein Y89_0990 PF00230 Major intrinsic protein Y89_0992 PF00072 Response regulator receiver domain Y89_0992 PF00486 Transcriptional regulatory protein, C terminal Y89_0993 PF00719 Inorganic pyrophosphatase Y89_0994 PF06167 Glucose-regulated metallo-peptidase M90 Y89_0995 PF09335 Y89_0995 Y89_0997 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_0998 PF00583 Acetyltransferase (GNAT) family Y89_0999 PF05985 Ethanolamine ammonia-lyase light chain (EutC) Y89_1000 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Y89_1001 PF13520 Amino acid permease Y89_1002 PF00171 Aldehyde dehydrogenase family Y89_1003 PF00158 Sigma-54 interaction domain Y89_1003 PF01590 GAF domain Y89_1003 PF02954 Bacterial regulatory protein, Fis family Y89_1004 PF01225 Mur ligase family, catalytic domain Y89_1004 PF02875 Mur ligase family, glutamate ligase domain Y89_1004 PF08245 Mur ligase middle domain Y89_1005 PF02441 Flavoprotein Y89_1006 PF07119 Y89_1006 Y89_1007 PF08732 Y89_1007 Y89_1008 PF01650 Peptidase C13 family Y89_1008 PF02493 MORN repeat Y89_1009 PF01575 MaoC like domain Y89_1010 PF03788 Y89_1010 Y89_1011 PF04172 Y89_1011 Y89_1012 PF02190 ATP-dependent protease La (LON) domain Y89_1013 PF01569 PAP2 superfamily Y89_1013 PF09335 Y89_1013 Y89_1014 PF02245 Methylpurine-DNA glycosylase (MPG) Y89_1015 PF04072 Leucine carboxyl methyltransferase Y89_1016 PF00561 alpha/beta hydrolase fold Y89_1017 PF00171 Aldehyde dehydrogenase family Y89_1018 PF01467 Cytidylyltransferase Y89_1019 PF02410 Oligomerisation domain Y89_1020 PF02590 Predicted SPOUT methyltransferase Y89_1021 PF00905 Penicillin binding protein transpeptidase domain Y89_1021 PF03717 Penicillin-binding Protein dimerisation domain Y89_1022 PF01098 Y89_1022 Y89_1023 PF13406 Transglycosylase SLT domain Y89_1024 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Y89_1024 PF05036 Sporulation related domain Y89_1025 PF00768 D-alanyl-D-alanine carboxypeptidase Y89_1025 PF07943 Penicillin-binding protein 5, C-terminal domain Y89_1026 PF04359 Protein of unknown function (DUF493) Y89_1027 PF03099 Biotin/lipoate A/B protein ligase family Y89_1028 PF04055 Radical SAM superfamily Y89_1028 PF16881 Y89_1028 Y89_1029 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1029 PF03466 LysR substrate binding domain Y89_1030 PF00561 alpha/beta hydrolase fold Y89_1031 PF01471 Putative peptidoglycan binding domain Y89_1031 PF13406 Transglycosylase SLT domain Y89_1032 PF03889 Y89_1032 Y89_1033 PF06144 DNA polymerase III, delta subunit Y89_1033 PF14840 Processivity clamp loader gamma complex DNA pol III C-term Y89_1034 PF04390 Lipopolysaccharide-assembly Y89_1035 PF00133 tRNA synthetases class I (I, L, M and V) Y89_1035 PF08264 Anticodon-binding domain of tRNA Y89_1035 PF09334 tRNA synthetases class I (M) Y89_1035 PF13603 Leucyl-tRNA synthetase, Domain 2 Y89_1037 PF02698 DUF218 domain Y89_1038 PF00795 Carbon-nitrogen hydrolase Y89_1039 PF00571 CBS domain Y89_1039 PF03471 Transporter associated domain Y89_1040 PF02130 Uncharacterized protein family UPF0054 Y89_1041 PF02562 PhoH-like protein Y89_1042 PF00919 Uncharacterized protein family UPF0004 Y89_1042 PF01938 TRAM domain Y89_1042 PF04055 Radical SAM superfamily Y89_1043 PF08850 Y89_1043 Y89_1044 PF08238 Sel1 repeat Y89_1045 PF00202 Aminotransferase class-III Y89_1046 PF02581 Thiamine monophosphate synthase/TENI Y89_1047 PF08543 Phosphomethylpyrimidine kinase Y89_1048 PF00072 Response regulator receiver domain Y89_1048 PF00512 His Kinase A (phospho-acceptor) domain Y89_1048 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1048 PF07695 Y89_1048 Y89_1048 PF07696 7TMR-DISM extracellular 2 Y89_1049 PF00440 Bacterial regulatory proteins, tetR family Y89_1050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_1050 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_1051 PF03061 Thioesterase superfamily Y89_1052 PF01048 Phosphorylase superfamily Y89_1052 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus Y89_1053 PF02810 SEC-C motif Y89_1054 PF12706 Beta-lactamase superfamily domain Y89_1055 PF00849 RNA pseudouridylate synthase Y89_1057 PF10981 Y89_1057 Y89_1058 PF01037 AsnC family Y89_1058 PF13412 Winged helix-turn-helix DNA-binding Y89_1060 PF01545 Cation efflux family Y89_1060 PF16916 Y89_1060 Y89_1062 PF00270 DEAD/DEAH box helicase Y89_1062 PF00271 Helicase conserved C-terminal domain Y89_1062 PF04408 Helicase associated domain (HA2) Y89_1062 PF08482 Y89_1062 Y89_1065 PF03372 Endonuclease/Exonuclease/phosphatase family Y89_1066 PF00106 short chain dehydrogenase Y89_1067 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_1069 PF00296 Luciferase-like monooxygenase Y89_1070 PF00857 Isochorismatase family Y89_1071 PF09849 Y89_1071 Y89_1072 PF01936 NYN domain Y89_1073 PF00270 DEAD/DEAH box helicase Y89_1073 PF00271 Helicase conserved C-terminal domain Y89_1074 PF03486 HI0933-like protein Y89_1075 PF00072 Response regulator receiver domain Y89_1075 PF00196 Bacterial regulatory proteins, luxR family Y89_1076 PF00072 Response regulator receiver domain Y89_1076 PF00563 EAL domain Y89_1077 PF00072 Response regulator receiver domain Y89_1077 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_1077 PF00512 His Kinase A (phospho-acceptor) domain Y89_1077 PF01627 Hpt domain Y89_1077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1077 PF08448 PAS fold Y89_1078 PF13302 Acetyltransferase (GNAT) domain Y89_1079 PF13302 Acetyltransferase (GNAT) domain Y89_1080 PF00881 Nitroreductase family Y89_1081 PF13622 Thioesterase-like superfamily Y89_1082 PF13419 Haloacid dehalogenase-like hydrolase Y89_1083 PF00216 Bacterial DNA-binding protein Y89_1084 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_1085 PF09084 NMT1/THI5 like Y89_1086 PF00005 ABC transporter Y89_1087 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1088 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y89_1089 PF03169 Y89_1089 Y89_1090 PF02028 BCCT family transporter Y89_1092 PF03180 NLPA lipoprotein Y89_1093 PF01654 Y89_1093 Y89_1094 PF02322 Y89_1094 Y89_1095 PF10617 Y89_1095 Y89_1096 PF12833 Helix-turn-helix domain Y89_1097 PF07690 Major Facilitator Superfamily Y89_1098 PF00108 Thiolase, N-terminal domain Y89_1098 PF02803 Thiolase, C-terminal domain Y89_1099 PF00501 AMP-binding enzyme Y89_1099 PF13193 AMP-binding enzyme C-terminal domain Y89_1100 PF06980 Y89_1100 Y89_1101 PF07044 Protein of unknown function (DUF1329) Y89_1102 PF00196 Bacterial regulatory proteins, luxR family Y89_1103 PF00122 E1-E2 ATPase Y89_1103 PF00403 Heavy-metal-associated domain Y89_1103 PF00702 haloacid dehalogenase-like hydrolase Y89_1104 PF02562 PhoH-like protein Y89_1104 PF13638 PIN domain Y89_1105 PF01967 MoaC family Y89_1106 PF02597 ThiS family Y89_1107 PF02391 MoaE protein Y89_1108 PF00994 Probable molybdopterin binding domain Y89_1109 PF00994 Probable molybdopterin binding domain Y89_1109 PF03453 MoeA N-terminal region (domain I and II) Y89_1109 PF03454 MoeA C-terminal region (domain IV) Y89_1110 PF01136 Y89_1110 Y89_1111 PF01136 Y89_1111 Y89_1112 PF02036 SCP-2 sterol transfer family Y89_1113 PF09423 PhoD-like phosphatase Y89_1113 PF16655 Y89_1113 Y89_1114 PF00932 Lamin Tail Domain Y89_1114 PF03372 Endonuclease/Exonuclease/phosphatase family Y89_1115 PF15579 Y89_1115 Y89_1116 PF15648 Y89_1116 Y89_1118 PF13503 Y89_1118 Y89_1119 PF05488 PAAR motif Y89_1120 PF00009 Elongation factor Tu GTP binding domain Y89_1120 PF03144 Elongation factor Tu domain 2 Y89_1120 PF16658 Y89_1120 Y89_1121 PF08816 Inhibitor of vertebrate lysozyme (Ivy) Y89_1122 PF00593 TonB dependent receptor Y89_1122 PF07660 Secretin and TonB N terminus short domain Y89_1122 PF07715 TonB-dependent Receptor Plug Domain Y89_1123 PF04773 FecR protein Y89_1123 PF16220 Y89_1123 Y89_1124 PF04542 Sigma-70 region 2 Y89_1124 PF08281 Sigma-70, region 4 Y89_1125 PF12833 Helix-turn-helix domain Y89_1126 PF00892 EamA-like transporter family Y89_1127 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_1127 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_1128 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1128 PF03466 LysR substrate binding domain Y89_1129 PF02321 Outer membrane efflux protein Y89_1130 PF04632 Y89_1130 Y89_1131 PF07869 Y89_1131 Y89_1132 PF13437 HlyD family secretion protein Y89_1132 PF13533 Biotin-lipoyl like Y89_1133 PF00005 ABC transporter Y89_1133 PF00571 CBS domain Y89_1134 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1135 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y89_1136 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1137 PF00999 Sodium/hydrogen exchanger family Y89_1140 PF13242 HAD-hyrolase-like Y89_1140 PF13344 Haloacid dehalogenase-like hydrolase Y89_1141 PF03162 Tyrosine phosphatase family Y89_1143 PF00106 short chain dehydrogenase Y89_1144 PF08241 Methyltransferase domain Y89_1146 PF08859 Y89_1146 Y89_1147 PF00072 Response regulator receiver domain Y89_1147 PF00196 Bacterial regulatory proteins, luxR family Y89_1148 PF00672 HAMP domain Y89_1148 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1148 PF07730 Histidine kinase Y89_1148 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Y89_1149 PF07690 Major Facilitator Superfamily Y89_1150 PF07690 Major Facilitator Superfamily Y89_1151 PF00384 Molybdopterin oxidoreductase Y89_1151 PF01568 Molydopterin dinucleotide binding domain Y89_1151 PF14710 Respiratory nitrate reductase alpha N-terminal Y89_1152 PF13247 4Fe-4S dicluster domain Y89_1152 PF14711 Respiratory nitrate reductase beta C-terminal Y89_1153 PF02613 Nitrate reductase delta subunit Y89_1154 PF02665 Nitrate reductase gamma subunit Y89_1155 PF00639 PPIC-type PPIASE domain Y89_1156 PF04055 Radical SAM superfamily Y89_1156 PF06463 Molybdenum Cofactor Synthesis C Y89_1156 PF13353 4Fe-4S single cluster domain Y89_1157 PF00174 Oxidoreductase molybdopterin binding domain Y89_1158 PF00593 TonB dependent receptor Y89_1158 PF07715 TonB-dependent Receptor Plug Domain Y89_1159 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_1160 PF08348 Y89_1160 Y89_1160 PF13309 Y89_1160 Y89_1161 PF01266 FAD dependent oxidoreductase Y89_1162 PF02423 Ornithine cyclodeaminase/mu-crystallin family Y89_1163 PF00270 DEAD/DEAH box helicase Y89_1163 PF00271 Helicase conserved C-terminal domain Y89_1164 PF00501 AMP-binding enzyme Y89_1164 PF13193 AMP-binding enzyme C-terminal domain Y89_1165 PF02230 Phospholipase/Carboxylesterase Y89_1166 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_1167 PF01066 CDP-alcohol phosphatidyltransferase Y89_1168 PF12680 SnoaL-like domain Y89_1169 PF17171 Y89_1169 Y89_1169 PF17172 Y89_1169 Y89_1170 PF01541 GIY-YIG catalytic domain Y89_1171 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_1172 PF13410 Glutathione S-transferase, C-terminal domain Y89_1172 PF13417 Glutathione S-transferase, N-terminal domain Y89_1173 PF01988 Y89_1173 Y89_1175 PF04245 Y89_1175 Y89_1176 PF16868 Y89_1176 Y89_1178 PF00857 Isochorismatase family Y89_1179 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1179 PF03466 LysR substrate binding domain Y89_1180 PF13417 Glutathione S-transferase, N-terminal domain Y89_1181 PF09933 Y89_1181 Y89_1182 PF05932 Tir chaperone protein (CesT) family Y89_1183 PF03496 ADP-ribosyltransferase exoenzyme Y89_1183 PF03545 Yersinia virulence determinant (YopE) Y89_1184 PF05971 Protein of unknown function (DUF890) Y89_1185 PF02080 TrkA-C domain Y89_1185 PF03600 Citrate transporter Y89_1186 PF00005 ABC transporter Y89_1187 PF02653 Y89_1187 Y89_1188 PF04392 ABC transporter substrate binding protein Y89_1192 PF00133 tRNA synthetases class I (I, L, M and V) Y89_1192 PF08264 Anticodon-binding domain of tRNA Y89_1192 PF10458 Valyl tRNA synthetase tRNA binding arm Y89_1194 PF04364 DNA polymerase III chi subunit, HolC Y89_1195 PF00883 Cytosol aminopeptidase family, catalytic domain Y89_1195 PF02789 Cytosol aminopeptidase family, N-terminal domain Y89_1196 PF07883 Cupin domain Y89_1196 PF12833 Helix-turn-helix domain Y89_1197 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Y89_1198 PF03739 Y89_1198 Y89_1199 PF03739 Y89_1199 Y89_1200 PF06271 Y89_1200 Y89_1201 PF00563 EAL domain Y89_1201 PF12792 Y89_1201 Y89_1202 PF02547 Queuosine biosynthesis protein Y89_1203 PF01702 Queuine tRNA-ribosyltransferase Y89_1204 PF02699 Preprotein translocase subunit Y89_1205 PF02355 Protein export membrane protein Y89_1205 PF07549 SecD/SecF GG Motif Y89_1205 PF13721 SecD export protein N-terminal TM region Y89_1206 PF02355 Protein export membrane protein Y89_1206 PF07549 SecD/SecF GG Motif Y89_1207 PF05433 Y89_1207 Y89_1208 PF00459 Inositol monophosphatase family Y89_1209 PF00588 SpoU rRNA Methylase family Y89_1210 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_1211 PF02082 Transcriptional regulator Y89_1212 PF00266 Aminotransferase class-V Y89_1213 PF01592 NifU-like N terminal domain Y89_1214 PF01521 Iron-sulphur cluster biosynthesis Y89_1215 PF00226 DnaJ domain Y89_1215 PF07743 HSCB C-terminal oligomerisation domain Y89_1216 PF00012 Hsp70 protein Y89_1217 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_1218 PF04384 Iron-sulphur cluster assembly Y89_1219 PF00334 Nucleoside diphosphate kinase Y89_1220 PF04055 Radical SAM superfamily Y89_1221 PF13414 TPR repeat Y89_1221 PF13424 Tetratricopeptide repeat Y89_1222 PF13413 Helix-turn-helix domain Y89_1222 PF13464 Y89_1222 Y89_1223 PF04551 GcpE protein Y89_1224 PF03129 Anticodon binding domain Y89_1224 PF13393 Histidyl-tRNA synthetase Y89_1225 PF09976 Tetratricopeptide repeat Y89_1226 PF13360 PQQ-like domain Y89_1227 PF01926 50S ribosome-binding GTPase Y89_1227 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Y89_1228 PF00155 Aminotransferase class I and II Y89_1229 PF00795 Carbon-nitrogen hydrolase Y89_1230 PF06078 Bacterial protein of unknown function (DUF937) Y89_1231 PF00248 Aldo/keto reductase family Y89_1234 PF00682 HMGL-like Y89_1234 PF08502 LeuA allosteric (dimerisation) domain Y89_1235 PF11162 Y89_1235 Y89_1236 PF00593 TonB dependent receptor Y89_1236 PF07715 TonB-dependent Receptor Plug Domain Y89_1237 PF03413 Peptidase propeptide and YPEB domain Y89_1237 PF03929 Y89_1237 Y89_1238 PF14248 Y89_1238 Y89_1239 PF01551 Peptidase family M23 Y89_1240 PF11162 Y89_1240 Y89_1241 PF04314 Protein of unknown function (DUF461) Y89_1243 PF00857 Isochorismatase family Y89_1244 PF01965 DJ-1/PfpI family Y89_1244 PF12833 Helix-turn-helix domain Y89_1245 PF01427 D-ala-D-ala dipeptidase Y89_1246 PF06808 Y89_1246 Y89_1247 PF04290 Y89_1247 Y89_1248 PF03480 Bacterial extracellular solute-binding protein, family 7 Y89_1249 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1249 PF03466 LysR substrate binding domain Y89_1250 PF02601 Y89_1250 Y89_1250 PF13742 Y89_1250 Y89_1251 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1251 PF03466 LysR substrate binding domain Y89_1252 PF01925 Y89_1252 Y89_1253 PF00850 Histone deacetylase domain Y89_1254 PF07690 Major Facilitator Superfamily Y89_1255 PF13557 Y89_1255 Y89_1256 PF00196 Bacterial regulatory proteins, luxR family Y89_1257 PF00478 IMP dehydrogenase / GMP reductase domain Y89_1257 PF00571 CBS domain Y89_1258 PF00117 Glutamine amidotransferase class-I Y89_1258 PF00958 GMP synthase C terminal domain Y89_1258 PF02540 NAD synthase Y89_1259 PF07731 Multicopper oxidase Y89_1259 PF07732 Multicopper oxidase Y89_1260 PF14437 Y89_1260 Y89_1261 PF03222 Tryptophan/tyrosine permease family Y89_1262 PF09998 Y89_1262 Y89_1263 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_1263 PF01464 Transglycosylase SLT domain Y89_1264 PF02769 AIR synthase related protein, C-terminal domain Y89_1264 PF13507 CobB/CobQ-like glutamine amidotransferase domain Y89_1266 PF00367 phosphotransferase system, EIIB Y89_1266 PF02378 Phosphotransferase system, EIIC Y89_1267 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Y89_1267 PF00381 PTS HPr component phosphorylation site Y89_1267 PF00391 PEP-utilising enzyme, mobile domain Y89_1267 PF02896 PEP-utilising enzyme, TIM barrel domain Y89_1267 PF05524 PEP-utilising enzyme, N-terminal Y89_1268 PF01380 SIS domain Y89_1269 PF01979 Amidohydrolase family Y89_1270 PF00392 Bacterial regulatory proteins, gntR family Y89_1270 PF07702 UTRA domain Y89_1272 PF00293 NUDIX domain Y89_1272 PF14803 Nudix N-terminal Y89_1273 PF00293 NUDIX domain Y89_1274 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_1275 PF06945 Y89_1275 Y89_1276 PF01370 NAD dependent epimerase/dehydratase family Y89_1276 PF02222 ATP-grasp domain Y89_1277 PF13472 GDSL-like Lipase/Acylhydrolase family Y89_1278 PF00083 Sugar (and other) transporter Y89_1279 PF00571 CBS domain Y89_1279 PF01595 Y89_1279 Y89_1279 PF03471 Transporter associated domain Y89_1280 PF01578 Y89_1280 Y89_1281 PF00448 SRP54-type protein, GTPase domain Y89_1281 PF02881 SRP54-type protein, helical bundle domain Y89_1281 PF02978 Signal peptide binding domain Y89_1282 PF00886 Ribosomal protein S16 Y89_1283 PF01782 RimM N-terminal domain Y89_1283 PF05239 PRC-barrel domain Y89_1284 PF01746 tRNA (Guanine-1)-methyltransferase Y89_1285 PF01245 Ribosomal protein L19 Y89_1286 PF03061 Thioesterase superfamily Y89_1288 PF00999 Sodium/hydrogen exchanger family Y89_1288 PF02254 TrkA-N domain Y89_1289 PF00589 Phage integrase family Y89_1289 PF02899 Phage integrase, N-terminal SAM-like domain Y89_1290 PF10411 Disulfide bond isomerase protein N-terminus Y89_1290 PF13098 Thioredoxin-like domain Y89_1292 PF00742 Homoserine dehydrogenase Y89_1292 PF01842 ACT domain Y89_1292 PF03447 Homoserine dehydrogenase, NAD binding domain Y89_1293 PF00291 Pyridoxal-phosphate dependent enzyme Y89_1293 PF14821 Threonine synthase N terminus Y89_1294 PF12740 Chlorophyllase enzyme Y89_1295 PF12021 Y89_1295 Y89_1296 PF02515 CoA-transferase family III Y89_1297 PF09938 Y89_1297 Y89_1298 PF04012 Y89_1298 Y89_1301 PF07728 AAA domain (dynein-related subfamily) Y89_1301 PF12458 Y89_1301 Y89_1302 PF13091 PLD-like domain Y89_1303 PF07152 YaeQ protein Y89_1304 PF01368 DHH family Y89_1304 PF02272 DHHA1 domain Y89_1305 PF01447 Thermolysin metallopeptidase, catalytic domain Y89_1305 PF02868 Thermolysin metallopeptidase, alpha-helical domain Y89_1305 PF03413 Peptidase propeptide and YPEB domain Y89_1305 PF07504 Fungalysin/Thermolysin Propeptide Motif Y89_1308 PF07690 Major Facilitator Superfamily Y89_1310 PF14903 Y89_1310 Y89_1312 PF00072 Response regulator receiver domain Y89_1312 PF00196 Bacterial regulatory proteins, luxR family Y89_1313 PF13450 NAD(P)-binding Rossmann-like domain Y89_1314 PF04391 Y89_1314 Y89_1315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1315 PF03466 LysR substrate binding domain Y89_1316 PF00732 GMC oxidoreductase Y89_1316 PF05199 GMC oxidoreductase Y89_1317 PF00083 Sugar (and other) transporter Y89_1318 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_1318 PF00672 HAMP domain Y89_1318 PF12729 Y89_1318 Y89_1319 PF01584 CheW-like domain Y89_1320 PF01739 CheR methyltransferase, SAM binding domain Y89_1321 PF01584 CheW-like domain Y89_1322 PF00072 Response regulator receiver domain Y89_1322 PF01584 CheW-like domain Y89_1322 PF01627 Hpt domain Y89_1322 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1323 PF00072 Response regulator receiver domain Y89_1323 PF01339 CheB methylesterase Y89_1324 PF00072 Response regulator receiver domain Y89_1324 PF00990 GGDEF domain Y89_1325 PF00472 RF-1 domain Y89_1325 PF03462 PCRF domain Y89_1326 PF00152 tRNA synthetases class II (D, K and N) Y89_1326 PF01336 OB-fold nucleic acid binding domain Y89_1327 PF00440 Bacterial regulatory proteins, tetR family Y89_1329 PF08014 Y89_1329 Y89_1330 PF01987 Mitochondrial biogenesis AIM24 Y89_1331 PF12146 Putative lysophospholipase Y89_1333 PF01661 Macro domain Y89_1334 PF00691 OmpA family Y89_1334 PF14346 Domain of unknown function (DUF4398) Y89_1335 PF14346 Domain of unknown function (DUF4398) Y89_1336 PF00122 E1-E2 ATPase Y89_1336 PF00702 haloacid dehalogenase-like hydrolase Y89_1337 PF13411 MerR HTH family regulatory protein Y89_1339 PF00311 Phosphoenolpyruvate carboxylase Y89_1340 PF00406 Adenylate kinase Y89_1340 PF05191 Adenylate kinase, active site lid Y89_1341 PF00814 Glycoprotease family Y89_1343 PF01904 Protein of unknown function DUF72 Y89_1344 PF13714 Phosphoenolpyruvate phosphomutase Y89_1345 PF06904 Y89_1345 Y89_1346 PF04445 Putative SAM-dependent methyltransferase Y89_1347 PF00067 Cytochrome P450 Y89_1348 PF00440 Bacterial regulatory proteins, tetR family Y89_1348 PF14246 AefR-like transcriptional repressor, C-terminal region Y89_1349 PF16576 Y89_1349 Y89_1350 PF00873 AcrB/AcrD/AcrF family Y89_1351 PF13852 Y89_1351 Y89_1352 PF09619 Type III secretion system lipoprotein chaperone (YscW) Y89_1353 PF01553 Acyltransferase Y89_1354 PF00005 ABC transporter Y89_1355 PF12679 Y89_1355 Y89_1356 PF09822 Y89_1356 Y89_1357 PF14238 Y89_1357 Y89_1358 PF02657 Fe-S metabolism associated domain Y89_1359 PF00266 Aminotransferase class-V Y89_1360 PF14602 Hexapeptide repeat of succinyl-transferase Y89_1360 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle Y89_1361 PF01810 Y89_1361 Y89_1362 PF03960 ArsC family Y89_1363 PF03692 Y89_1363 Y89_1366 PF00999 Sodium/hydrogen exchanger family Y89_1367 PF00155 Aminotransferase class I and II Y89_1368 PF01842 ACT domain Y89_1368 PF01909 Nucleotidyltransferase domain Y89_1368 PF01966 HD domain Y89_1368 PF08335 GlnD PII-uridylyltransferase Y89_1369 PF00557 Metallopeptidase family M24 Y89_1370 PF00318 Ribosomal protein S2 Y89_1371 PF00889 Elongation factor TS Y89_1372 PF00696 Amino acid kinase family Y89_1373 PF01765 Ribosome recycling factor Y89_1374 PF01255 Putative undecaprenyl diphosphate synthase Y89_1375 PF01148 Cytidylyltransferase family Y89_1376 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Y89_1376 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal Y89_1376 PF13288 DXP reductoisomerase C-terminal domain Y89_1377 PF02163 Peptidase family M50 Y89_1377 PF13180 PDZ domain Y89_1378 PF01103 Surface antigen Y89_1378 PF07244 Surface antigen variable number repeat Y89_1379 PF03938 Outer membrane protein (OmpH-like) Y89_1380 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_1380 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Y89_1381 PF07977 FabA-like domain Y89_1382 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_1382 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Y89_1383 PF02684 Y89_1383 Y89_1384 PF01351 Ribonuclease HII Y89_1385 PF01235 Y89_1385 Y89_1386 PF01336 OB-fold nucleic acid binding domain Y89_1386 PF02811 PHP domain Y89_1386 PF07733 Bacterial DNA polymerase III alpha subunit Y89_1386 PF14579 Helix-hairpin-helix motif Y89_1387 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Y89_1388 PF01171 PP-loop family Y89_1388 PF09179 TilS substrate binding domain Y89_1388 PF11734 TilS substrate C-terminal domain Y89_1389 PF00117 Glutamine amidotransferase class-I Y89_1389 PF06418 CTP synthase N-terminus Y89_1390 PF00793 DAHP synthetase I family Y89_1391 PF00113 Enolase, C-terminal TIM barrel domain Y89_1391 PF03952 Enolase, N-terminal domain Y89_1392 PF04977 Septum formation initiator Y89_1393 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Y89_1394 PF01206 Sulfurtransferase TusA Y89_1395 PF04143 Y89_1395 Y89_1396 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1396 PF03466 LysR substrate binding domain Y89_1397 PF00107 Zinc-binding dehydrogenase Y89_1397 PF08240 Alcohol dehydrogenase GroES-like domain Y89_1398 PF00756 Putative esterase Y89_1399 PF02542 YgbB family Y89_1400 PF01142 tRNA pseudouridine synthase D (TruD) Y89_1401 PF01975 Survival protein SurE Y89_1402 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Y89_1403 PF01476 LysM domain Y89_1403 PF01551 Peptidase family M23 Y89_1404 PF00140 Sigma-70 factor, region 1 Y89_1404 PF04539 Sigma-70 region 3 Y89_1404 PF04542 Sigma-70 region 2 Y89_1404 PF04545 Sigma-70, region 4 Y89_1405 PF00037 4Fe-4S binding domain Y89_1405 PF11953 Domain of unknown function (DUF3470) Y89_1406 PF00488 MutS domain V Y89_1406 PF01624 MutS domain I Y89_1406 PF05188 MutS domain II Y89_1406 PF05190 MutS family domain IV Y89_1406 PF05192 MutS domain III Y89_1408 PF02464 Competence-damaged protein Y89_1409 PF00154 recA bacterial DNA recombination protein Y89_1410 PF02631 RecX family Y89_1411 PF03641 Possible lysine decarboxylase Y89_1412 PF00753 Metallo-beta-lactamase superfamily Y89_1412 PF07521 RNA-metabolising metallo-beta-lactamase Y89_1412 PF10996 Beta-Casp domain Y89_1413 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Y89_1413 PF09364 XFP N-terminal domain Y89_1414 PF12843 Y89_1414 Y89_1415 PF13652 Domain of unknown function (DUF4146) Y89_1416 PF13416 Bacterial extracellular solute-binding protein Y89_1417 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1418 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1419 PF00005 ABC transporter Y89_1419 PF08402 TOBE domain Y89_1420 PF03942 Y89_1420 Y89_1421 PF00892 EamA-like transporter family Y89_1422 PF00072 Response regulator receiver domain Y89_1422 PF00196 Bacterial regulatory proteins, luxR family Y89_1423 PF01219 Prokaryotic diacylglycerol kinase Y89_1424 PF01645 Conserved region in glutamate synthase Y89_1425 PF01197 Ribosomal protein L31 Y89_1426 PF00444 Ribosomal protein L36 Y89_1427 PF00196 Bacterial regulatory proteins, luxR family Y89_1428 PF00795 Carbon-nitrogen hydrolase Y89_1429 PF00324 Amino acid permease Y89_1430 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y89_1430 PF02805 Metal binding domain of Ada Y89_1430 PF12833 Helix-turn-helix domain Y89_1431 PF00083 Sugar (and other) transporter Y89_1432 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1432 PF03466 LysR substrate binding domain Y89_1433 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_1433 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_1434 PF02515 CoA-transferase family III Y89_1435 PF00378 Enoyl-CoA hydratase/isomerase family Y89_1436 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_1436 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_1437 PF00108 Thiolase, N-terminal domain Y89_1437 PF02803 Thiolase, C-terminal domain Y89_1438 PF03573 outer membrane porin, OprD family Y89_1439 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1439 PF03466 LysR substrate binding domain Y89_1440 PF00561 alpha/beta hydrolase fold Y89_1441 PF06942 Y89_1441 Y89_1442 PF01266 FAD dependent oxidoreductase Y89_1442 PF16901 Y89_1442 Y89_1443 PF00455 Y89_1443 Y89_1443 PF08220 DeoR-like helix-turn-helix domain Y89_1444 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y89_1444 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y89_1445 PF00230 Major intrinsic protein Y89_1446 PF04073 Aminoacyl-tRNA editing domain Y89_1447 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y89_1447 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y89_1448 PF02567 Phenazine biosynthesis-like protein Y89_1450 PF01292 Prokaryotic cytochrome b561 Y89_1451 PF00403 Heavy-metal-associated domain Y89_1452 PF00440 Bacterial regulatory proteins, tetR family Y89_1452 PF08361 MAATS-type transcriptional repressor, C-terminal region Y89_1453 PF07690 Major Facilitator Superfamily Y89_1455 PF02311 AraC-like ligand binding domain Y89_1455 PF12833 Helix-turn-helix domain Y89_1456 PF00171 Aldehyde dehydrogenase family Y89_1457 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y89_1457 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y89_1458 PF00501 AMP-binding enzyme Y89_1458 PF13193 AMP-binding enzyme C-terminal domain Y89_1458 PF16177 Y89_1458 Y89_1459 PF08240 Alcohol dehydrogenase GroES-like domain Y89_1459 PF13602 Zinc-binding dehydrogenase Y89_1460 PF03992 Antibiotic biosynthesis monooxygenase Y89_1461 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1461 PF03466 LysR substrate binding domain Y89_1462 PF01337 Barstar (barnase inhibitor) Y89_1463 PF01026 TatD related DNase Y89_1464 PF00356 Bacterial regulatory proteins, lacI family Y89_1464 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y89_1465 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y89_1465 PF00381 PTS HPr component phosphorylation site Y89_1465 PF00391 PEP-utilising enzyme, mobile domain Y89_1465 PF02896 PEP-utilising enzyme, TIM barrel domain Y89_1465 PF05524 PEP-utilising enzyme, N-terminal Y89_1466 PF00294 pfkB family carbohydrate kinase Y89_1467 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Y89_1467 PF02378 Phosphotransferase system, EIIC Y89_1468 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y89_1468 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y89_1468 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y89_1469 PF00893 Small Multidrug Resistance protein Y89_1470 PF00892 EamA-like transporter family Y89_1471 PF02366 Y89_1471 Y89_1472 PF01522 Polysaccharide deacetylase Y89_1473 PF00551 Formyl transferase Y89_1473 PF01370 NAD dependent epimerase/dehydratase family Y89_1473 PF02911 Formyl transferase, C-terminal domain Y89_1474 PF00535 Glycosyl transferase family 2 Y89_1475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Y89_1476 PF00483 Nucleotidyl transferase Y89_1476 PF01050 Mannose-6-phosphate isomerase Y89_1477 PF11182 Y89_1477 Y89_1478 PF16822 Y89_1478 Y89_1479 PF03062 Y89_1479 Y89_1480 PF05426 Alginate lyase Y89_1481 PF16822 Y89_1481 Y89_1481 PF16824 Y89_1481 Y89_1482 PF05048 Periplasmic copper-binding protein (NosD) Y89_1483 PF13372 Alginate export Y89_1485 PF07238 PilZ domain Y89_1485 PF13437 HlyD family secretion protein Y89_1486 PF13641 Glycosyltransferase like family 2 Y89_1487 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y89_1487 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y89_1487 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y89_1488 PF03883 Y89_1488 Y89_1489 PF00005 ABC transporter Y89_1489 PF08402 TOBE domain Y89_1490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Y89_1490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Y89_1492 PF00082 Subtilase family Y89_1492 PF03797 Autotransporter beta-domain Y89_1492 PF12951 Y89_1492 Y89_1493 PF00384 Molybdopterin oxidoreductase Y89_1493 PF01568 Molydopterin dinucleotide binding domain Y89_1493 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y89_1494 PF00462 Glutaredoxin Y89_1495 PF07690 Major Facilitator Superfamily Y89_1496 PF00210 Ferritin-like domain Y89_1497 PF04324 BFD-like [2Fe-2S] binding domain Y89_1498 PF00578 AhpC/TSA family Y89_1498 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y89_1499 PF00929 Exonuclease Y89_1500 PF01979 Amidohydrolase family Y89_1501 PF00691 OmpA family Y89_1502 PF00764 Arginosuccinate synthase Y89_1504 PF16576 Y89_1504 Y89_1505 PF00873 AcrB/AcrD/AcrF family Y89_1506 PF02321 Outer membrane efflux protein Y89_1507 PF00403 Heavy-metal-associated domain Y89_1508 PF14515 Haem-oxygenase-associated N-terminal helices Y89_1508 PF14518 Iron-containing redox enzyme Y89_1509 PF14515 Haem-oxygenase-associated N-terminal helices Y89_1509 PF14518 Iron-containing redox enzyme Y89_1510 PF00206 Lyase Y89_1510 PF10397 Adenylosuccinate lyase C-terminus Y89_1511 PF00206 Lyase Y89_1511 PF10397 Adenylosuccinate lyase C-terminus Y89_1512 PF13847 Methyltransferase domain Y89_1514 PF00633 Helix-hairpin-helix motif Y89_1514 PF00730 HhH-GPD superfamily base excision DNA repair protein Y89_1514 PF10576 Iron-sulfur binding domain of endonuclease III Y89_1515 PF02508 Y89_1515 Y89_1516 PF04205 FMN-binding domain Y89_1517 PF03116 Y89_1517 Y89_1518 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Y89_1518 PF10531 SLBB domain Y89_1518 PF13183 4Fe-4S dicluster domain Y89_1518 PF13375 RnfC Barrel sandwich hybrid domain Y89_1519 PF04060 Putative Fe-S cluster Y89_1519 PF14697 4Fe-4S dicluster domain Y89_1520 PF02508 Y89_1520 Y89_1523 PF14257 Y89_1523 Y89_1524 PF01588 Putative tRNA binding domain Y89_1524 PF09334 tRNA synthetases class I (M) Y89_1525 PF01883 Domain of unknown function DUF59 Y89_1525 PF10609 ParA/MinD ATPase like Y89_1526 PF00692 dUTPase Y89_1527 PF00561 alpha/beta hydrolase fold Y89_1528 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Y89_1528 PF03033 Glycosyltransferase family 28 N-terminal domain Y89_1529 PF00196 Bacterial regulatory proteins, luxR family Y89_1529 PF03472 Autoinducer binding domain Y89_1530 PF00765 Autoinducer synthetase Y89_1531 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_1532 PF00892 EamA-like transporter family Y89_1534 PF00877 NlpC/P60 family Y89_1535 PF00390 Malic enzyme, N-terminal domain Y89_1535 PF03949 Malic enzyme, NAD binding domain Y89_1536 PF00293 NUDIX domain Y89_1537 PF01872 RibD C-terminal domain Y89_1538 PF00924 Mechanosensitive ion channel Y89_1539 PF00083 Sugar (and other) transporter Y89_1540 PF00270 DEAD/DEAH box helicase Y89_1540 PF00271 Helicase conserved C-terminal domain Y89_1541 PF05977 Transmembrane secretion effector Y89_1543 PF06794 Uncharacterised protein family (UPF0270) Y89_1544 PF00072 Response regulator receiver domain Y89_1544 PF00512 His Kinase A (phospho-acceptor) domain Y89_1544 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1544 PF07695 Y89_1544 Y89_1544 PF07696 7TMR-DISM extracellular 2 Y89_1545 PF05343 M42 glutamyl aminopeptidase Y89_1546 PF00583 Acetyltransferase (GNAT) family Y89_1546 PF08443 RimK-like ATP-grasp domain Y89_1547 PF00733 Asparagine synthase Y89_1547 PF13537 Glutamine amidotransferase domain Y89_1548 PF01047 MarR family Y89_1549 PF01925 Y89_1549 Y89_1550 PF01266 FAD dependent oxidoreductase Y89_1550 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Y89_1551 PF03976 Polyphosphate kinase 2 (PPK2) Y89_1552 PF00108 Thiolase, N-terminal domain Y89_1552 PF02803 Thiolase, C-terminal domain Y89_1553 PF04337 Protein of unknown function, DUF480 Y89_1554 PF06039 Y89_1554 Y89_1556 PF00578 AhpC/TSA family Y89_1556 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y89_1557 PF09084 NMT1/THI5 like Y89_1558 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1559 PF00005 ABC transporter Y89_1560 PF03358 NADPH-dependent FMN reductase Y89_1561 PF09084 NMT1/THI5 like Y89_1562 PF00296 Luciferase-like monooxygenase Y89_1563 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1564 PF00005 ABC transporter Y89_1565 PF03459 TOBE domain Y89_1566 PF08888 HopJ type III effector protein Y89_1567 PF06844 Protein of unknown function (DUF1244) Y89_1568 PF02152 Dihydroneopterin aldolase Y89_1569 PF01227 GTP cyclohydrolase I Y89_1570 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_1572 PF00258 Flavodoxin Y89_1573 PF01548 Y89_1573 Y89_1573 PF02371 Y89_1573 Y89_1574 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1574 PF03466 LysR substrate binding domain Y89_1575 PF03788 Y89_1575 Y89_1576 PF04172 Y89_1576 Y89_1577 PF00596 Class II Aldolase and Adducin N-terminal domain Y89_1578 PF12697 Alpha/beta hydrolase family Y89_1580 PF00106 short chain dehydrogenase Y89_1581 PF00378 Enoyl-CoA hydratase/isomerase family Y89_1582 PF05899 Protein of unknown function (DUF861) Y89_1583 PF01266 FAD dependent oxidoreductase Y89_1584 PF12680 SnoaL-like domain Y89_1584 PF12833 Helix-turn-helix domain Y89_1585 PF06980 Y89_1585 Y89_1586 PF07044 Protein of unknown function (DUF1329) Y89_1587 PF00196 Bacterial regulatory proteins, luxR family Y89_1588 PF13369 Y89_1588 Y89_1589 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y89_1589 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Y89_1590 PF00676 Dehydrogenase E1 component Y89_1591 PF02779 Transketolase, pyrimidine binding domain Y89_1591 PF02780 Transketolase, C-terminal domain Y89_1592 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Y89_1592 PF00364 Biotin-requiring enzyme Y89_1592 PF02817 e3 binding domain Y89_1593 PF10990 Y89_1593 Y89_1595 PF07130 YebG protein Y89_1596 PF10976 Protein of unknown function (DUF2790) Y89_1598 PF04542 Sigma-70 region 2 Y89_1598 PF08281 Sigma-70, region 4 Y89_1599 PF04773 FecR protein Y89_1599 PF16220 Y89_1599 Y89_1600 PF00593 TonB dependent receptor Y89_1600 PF07715 TonB-dependent Receptor Plug Domain Y89_1601 PF06438 Heme-binding protein A (HasA) Y89_1602 PF00005 ABC transporter Y89_1602 PF00664 ABC transporter transmembrane region Y89_1603 PF00529 HlyD family secretion protein Y89_1604 PF02321 Outer membrane efflux protein Y89_1605 PF12021 Y89_1605 Y89_1606 PF06146 Y89_1606 Y89_1607 PF16576 Y89_1607 Y89_1608 PF12698 ABC-2 family transporter protein Y89_1609 PF12698 ABC-2 family transporter protein Y89_1610 PF07119 Y89_1610 Y89_1611 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1611 PF03466 LysR substrate binding domain Y89_1612 PF00175 Oxidoreductase NAD-binding domain Y89_1612 PF00970 Oxidoreductase FAD-binding domain Y89_1613 PF05573 NosL Y89_1614 PF12679 Y89_1614 Y89_1615 PF00005 ABC transporter Y89_1616 PF05048 Periplasmic copper-binding protein (NosD) Y89_1617 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Y89_1618 PF04205 FMN-binding domain Y89_1618 PF12801 Y89_1618 Y89_1619 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_1620 PF03992 Antibiotic biosynthesis monooxygenase Y89_1621 PF01980 Uncharacterised protein family UPF0066 Y89_1622 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_1623 PF10861 Y89_1623 Y89_1624 PF03869 Arc-like DNA binding domain Y89_1625 PF00005 ABC transporter Y89_1626 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein Y89_1627 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1628 PF00392 Bacterial regulatory proteins, gntR family Y89_1628 PF07702 UTRA domain Y89_1629 PF06754 Y89_1629 Y89_1630 PF05845 Bacterial phosphonate metabolism protein (PhnH) Y89_1631 PF05861 Y89_1631 Y89_1632 PF06007 Y89_1632 Y89_1633 PF00005 ABC transporter Y89_1634 PF00005 ABC transporter Y89_1635 PF07969 Amidohydrolase family Y89_1637 PF12706 Beta-lactamase superfamily domain Y89_1641 PF00583 Acetyltransferase (GNAT) family Y89_1643 PF00795 Carbon-nitrogen hydrolase Y89_1645 PF13433 Periplasmic binding protein domain Y89_1646 PF03861 ANTAR domain Y89_1647 PF02293 AmiS/UreI family transporter Y89_1648 PF07472 Fucose-binding lectin II (PA-IIL) Y89_1649 PF13437 HlyD family secretion protein Y89_1649 PF13533 Biotin-lipoyl like Y89_1650 PF11168 Y89_1650 Y89_1650 PF13515 Y89_1650 Y89_1651 PF00892 EamA-like transporter family Y89_1652 PF00291 Pyridoxal-phosphate dependent enzyme Y89_1653 PF00120 Glutamine synthetase, catalytic domain Y89_1654 PF07690 Major Facilitator Superfamily Y89_1655 PF09837 Uncharacterized protein conserved in bacteria (DUF2064) Y89_1656 PF07238 PilZ domain Y89_1656 PF07317 Flagellar regulator YcgR Y89_1657 PF05130 FlgN protein Y89_1658 PF04316 Anti-sigma-28 factor, FlgM Y89_1659 PF13144 SAF-like Y89_1660 PF00072 Response regulator receiver domain Y89_1660 PF01584 CheW-like domain Y89_1661 PF01739 CheR methyltransferase, SAM binding domain Y89_1661 PF03705 CheR methyltransferase, all-alpha domain Y89_1662 PF13466 STAS domain Y89_1663 PF00072 Response regulator receiver domain Y89_1663 PF07228 Stage II sporulation protein E (SpoIIE) Y89_1663 PF13581 Histidine kinase-like ATPase domain Y89_1664 PF01627 Hpt domain Y89_1665 PF00270 DEAD/DEAH box helicase Y89_1665 PF00271 Helicase conserved C-terminal domain Y89_1665 PF00570 HRDC domain Y89_1665 PF09382 RQC domain Y89_1665 PF16124 Y89_1665 Y89_1666 PF00990 GGDEF domain Y89_1667 PF10974 Y89_1667 Y89_1668 PF12802 MarR family Y89_1670 PF01103 Surface antigen Y89_1670 PF01734 Patatin-like phospholipase Y89_1670 PF07244 Surface antigen variable number repeat Y89_1671 PF10262 Rdx family Y89_1672 PF01370 NAD dependent epimerase/dehydratase family Y89_1673 PF07690 Major Facilitator Superfamily Y89_1675 PF00550 Phosphopantetheine attachment site Y89_1676 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y89_1676 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y89_1677 PF12680 SnoaL-like domain Y89_1678 PF00067 Cytochrome P450 Y89_1679 PF00106 short chain dehydrogenase Y89_1680 PF00668 Condensation domain Y89_1681 PF01494 FAD binding domain Y89_1682 PF00501 AMP-binding enzyme Y89_1682 PF00550 Phosphopantetheine attachment site Y89_1682 PF00668 Condensation domain Y89_1682 PF00975 Thioesterase domain Y89_1682 PF13193 AMP-binding enzyme C-terminal domain Y89_1683 PF00574 Clp protease Y89_1684 PF10118 Y89_1684 Y89_1685 PF00106 short chain dehydrogenase Y89_1685 PF00561 alpha/beta hydrolase fold Y89_1686 PF00557 Metallopeptidase family M24 Y89_1687 PF13411 MerR HTH family regulatory protein Y89_1688 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1688 PF03466 LysR substrate binding domain Y89_1689 PF04657 Y89_1689 Y89_1690 PF04185 Phosphoesterase family Y89_1690 PF05506 Y89_1690 Y89_1693 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1694 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1695 PF00005 ABC transporter Y89_1696 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein Y89_1697 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y89_1697 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y89_1698 PF00563 EAL domain Y89_1698 PF00990 GGDEF domain Y89_1698 PF03707 Y89_1698 Y89_1699 PF00884 Sulfatase Y89_1699 PF08019 Y89_1699 Y89_1700 PF00582 Universal stress protein family Y89_1701 PF00176 SNF2 family N-terminal domain Y89_1701 PF00271 Helicase conserved C-terminal domain Y89_1701 PF12137 RNA polymerase recycling family C-terminal Y89_1703 PF13532 2OG-Fe(II) oxygenase superfamily Y89_1706 PF04632 Y89_1706 Y89_1707 PF07869 Y89_1707 Y89_1708 PF13437 HlyD family secretion protein Y89_1708 PF13533 Biotin-lipoyl like Y89_1709 PF07690 Major Facilitator Superfamily Y89_1710 PF01575 MaoC like domain Y89_1711 PF12146 Putative lysophospholipase Y89_1712 PF00501 AMP-binding enzyme Y89_1712 PF13193 AMP-binding enzyme C-terminal domain Y89_1713 PF00501 AMP-binding enzyme Y89_1713 PF13193 AMP-binding enzyme C-terminal domain Y89_1714 PF09720 Y89_1714 Y89_1715 PF00271 Helicase conserved C-terminal domain Y89_1715 PF04408 Helicase associated domain (HA2) Y89_1715 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Y89_1715 PF11898 Y89_1715 Y89_1716 PF00245 Alkaline phosphatase Y89_1717 PF01230 HIT domain Y89_1718 PF05954 Phage late control gene D protein (GPD) Y89_1719 PF13503 Y89_1719 Y89_1723 PF00857 Isochorismatase family Y89_1724 PF00023 Ankyrin repeat Y89_1724 PF12796 Ankyrin repeats (3 copies) Y89_1725 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y89_1725 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y89_1726 PF04542 Sigma-70 region 2 Y89_1726 PF08281 Sigma-70, region 4 Y89_1727 PF13490 Putative zinc-finger Y89_1729 PF05114 Protein of unknown function (DUF692) Y89_1730 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) Y89_1731 PF07681 Y89_1731 Y89_1732 PF07396 Phosphate-selective porin O and P Y89_1733 PF07396 Phosphate-selective porin O and P Y89_1735 PF00106 short chain dehydrogenase Y89_1737 PF02694 Y89_1737 Y89_1740 PF00270 DEAD/DEAH box helicase Y89_1740 PF00271 Helicase conserved C-terminal domain Y89_1740 PF08494 Y89_1740 Y89_1741 PF00072 Response regulator receiver domain Y89_1741 PF00512 His Kinase A (phospho-acceptor) domain Y89_1741 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1741 PF12860 Y89_1741 Y89_1742 PF13302 Acetyltransferase (GNAT) domain Y89_1743 PF02311 AraC-like ligand binding domain Y89_1743 PF12833 Helix-turn-helix domain Y89_1744 PF00593 TonB dependent receptor Y89_1744 PF07715 TonB-dependent Receptor Plug Domain Y89_1745 PF01553 Acyltransferase Y89_1745 PF07690 Major Facilitator Superfamily Y89_1746 PF00313 'Cold-shock' DNA-binding domain Y89_1747 PF00893 Small Multidrug Resistance protein Y89_1748 PF01758 Sodium Bile acid symporter family Y89_1749 PF04381 Putative exonuclease, RdgC Y89_1750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y89_1750 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Y89_1751 PF06803 Y89_1751 Y89_1752 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_1753 PF01381 Helix-turn-helix Y89_1756 PF00563 EAL domain Y89_1756 PF00571 CBS domain Y89_1756 PF00990 GGDEF domain Y89_1757 PF00595 PDZ domain (Also known as DHR or GLGF) Y89_1757 PF03572 Peptidase family S41 Y89_1757 PF11818 Y89_1757 Y89_1758 PF00107 Zinc-binding dehydrogenase Y89_1758 PF08240 Alcohol dehydrogenase GroES-like domain Y89_1759 PF12710 haloacid dehalogenase-like hydrolase Y89_1760 PF00005 ABC transporter Y89_1760 PF08402 TOBE domain Y89_1761 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1762 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1764 PF13343 Bacterial extracellular solute-binding protein Y89_1765 PF00392 Bacterial regulatory proteins, gntR family Y89_1765 PF07702 UTRA domain Y89_1766 PF13302 Acetyltransferase (GNAT) domain Y89_1767 PF02127 Aminopeptidase I zinc metalloprotease (M18) Y89_1768 PF00849 RNA pseudouridylate synthase Y89_1769 PF03776 Septum formation topological specificity factor MinE Y89_1770 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y89_1771 PF03775 Septum formation inhibitor MinC, C-terminal domain Y89_1771 PF05209 Septum formation inhibitor MinC, N-terminal domain Y89_1772 PF03279 Y89_1772 Y89_1773 PF01734 Patatin-like phospholipase Y89_1774 PF02678 Pirin Y89_1774 PF05726 Pirin C-terminal cupin domain Y89_1775 PF04333 Y89_1775 Y89_1777 PF09834 Y89_1777 Y89_1778 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y89_1779 PF04341 Y89_1779 Y89_1780 PF00474 Sodium:solute symporter family Y89_1781 PF00027 Cyclic nucleotide-binding domain Y89_1781 PF00571 CBS domain Y89_1781 PF03445 Y89_1781 Y89_1781 PF10335 Y89_1781 Y89_1782 PF00929 Exonuclease Y89_1783 PF11752 Y89_1783 Y89_1784 PF01548 Y89_1784 Y89_1784 PF02371 Y89_1784 Y89_1785 PF04339 Y89_1785 Y89_1786 PF10976 Protein of unknown function (DUF2790) Y89_1787 PF00005 ABC transporter Y89_1787 PF00664 ABC transporter transmembrane region Y89_1788 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Y89_1789 PF12697 Alpha/beta hydrolase family Y89_1790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1790 PF03466 LysR substrate binding domain Y89_1792 PF02525 Flavodoxin-like fold Y89_1793 PF00892 EamA-like transporter family Y89_1794 PF01588 Putative tRNA binding domain Y89_1795 PF12833 Helix-turn-helix domain Y89_1796 PF12850 Calcineurin-like phosphoesterase superfamily domain Y89_1797 PF13439 Glycosyltransferase Family 4 Y89_1797 PF13692 Glycosyl transferases group 1 Y89_1798 PF00211 Adenylate and Guanylate cyclase catalytic domain Y89_1798 PF05230 Y89_1798 Y89_1799 PF06127 Y89_1799 Y89_1800 PF12625 Y89_1800 Y89_1800 PF12833 Helix-turn-helix domain Y89_1801 PF03886 Protein of unknown function (DUF330) Y89_1802 PF02470 Y89_1802 Y89_1803 PF00005 ABC transporter Y89_1804 PF02405 Y89_1804 Y89_1805 PF02386 Cation transport protein Y89_1806 PF03692 Y89_1806 Y89_1807 PF00881 Nitroreductase family Y89_1809 PF00512 His Kinase A (phospho-acceptor) domain Y89_1809 PF00672 HAMP domain Y89_1809 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1810 PF07813 LTXXQ motif family protein Y89_1811 PF00072 Response regulator receiver domain Y89_1811 PF00486 Transcriptional regulatory protein, C terminal Y89_1813 PF03795 YCII-related domain Y89_1814 PF04279 Y89_1814 Y89_1815 PF02811 PHP domain Y89_1816 PF01300 Telomere recombination Y89_1817 PF02616 ScpA/B protein Y89_1818 PF04079 Putative transcriptional regulators (Ypuh-like) Y89_1820 PF06945 Y89_1820 Y89_1821 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y89_1821 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Y89_1822 PF00920 Dehydratase family Y89_1823 PF02685 Glucokinase Y89_1824 PF00072 Response regulator receiver domain Y89_1824 PF00486 Transcriptional regulatory protein, C terminal Y89_1825 PF00512 His Kinase A (phospho-acceptor) domain Y89_1825 PF00672 HAMP domain Y89_1825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1826 PF01547 Bacterial extracellular solute-binding protein Y89_1827 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1828 PF00528 Binding-protein-dependent transport system inner membrane component Y89_1829 PF00005 ABC transporter Y89_1829 PF03459 TOBE domain Y89_1830 PF04966 Carbohydrate-selective porin, OprB family Y89_1831 PF01263 Aldose 1-epimerase Y89_1832 PF01380 SIS domain Y89_1832 PF01418 Helix-turn-helix domain, rpiR family Y89_1833 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Y89_1833 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Y89_1834 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Y89_1835 PF01081 KDPG and KHG aldolase Y89_1836 PF00293 NUDIX domain Y89_1837 PF00849 RNA pseudouridylate synthase Y89_1837 PF01479 S4 domain Y89_1839 PF00990 GGDEF domain Y89_1840 PF03616 Y89_1840 Y89_1841 PF00491 Arginase family Y89_1842 PF01614 Bacterial transcriptional regulator Y89_1842 PF09339 IclR helix-turn-helix domain Y89_1843 PF00106 short chain dehydrogenase Y89_1844 PF13419 Haloacid dehalogenase-like hydrolase Y89_1845 PF13489 Methyltransferase domain Y89_1846 PF01979 Amidohydrolase family Y89_1847 PF01008 Initiation factor 2 subunit family Y89_1848 PF00521 DNA gyrase/topoisomerase IV, subunit A Y89_1848 PF03989 DNA gyrase C-terminal domain, beta-propeller Y89_1849 PF00266 Aminotransferase class-V Y89_1850 PF00800 Prephenate dehydratase Y89_1850 PF01817 Chorismate mutase type II Y89_1850 PF01842 ACT domain Y89_1851 PF00155 Aminotransferase class I and II Y89_1852 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Y89_1852 PF02153 Prephenate dehydrogenase Y89_1853 PF02224 Cytidylate kinase Y89_1854 PF00575 S1 RNA binding domain Y89_1855 PF00216 Bacterial DNA-binding protein Y89_1856 PF02706 Chain length determinant protein Y89_1856 PF13807 Y89_1856 Y89_1857 PF16363 Y89_1857 Y89_1858 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Y89_1859 PF02350 UDP-N-acetylglucosamine 2-epimerase Y89_1860 PF03102 NeuB family Y89_1860 PF08666 SAF domain Y89_1861 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_1861 PF14602 Hexapeptide repeat of succinyl-transferase Y89_1862 PF00483 Nucleotidyl transferase Y89_1862 PF00571 CBS domain Y89_1863 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y89_1863 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Y89_1864 PF02348 Cytidylyltransferase Y89_1865 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_1869 PF00733 Asparagine synthase Y89_1870 PF00117 Glutamine amidotransferase class-I Y89_1871 PF00977 Histidine biosynthesis protein Y89_1873 PF01370 NAD dependent epimerase/dehydratase family Y89_1875 PF00534 Glycosyl transferases group 1 Y89_1877 PF00953 Glycosyl transferase family 4 Y89_1878 PF02719 Polysaccharide biosynthesis protein Y89_1879 PF12836 Helix-hairpin-helix motif Y89_1880 PF00155 Aminotransferase class I and II Y89_1881 PF00271 Helicase conserved C-terminal domain Y89_1881 PF02151 UvrB/uvrC motif Y89_1881 PF04851 Type III restriction enzyme, res subunit Y89_1881 PF12344 Ultra-violet resistance protein B Y89_1882 PF07690 Major Facilitator Superfamily Y89_1883 PF00529 HlyD family secretion protein Y89_1883 PF16576 Y89_1883 Y89_1884 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1884 PF03466 LysR substrate binding domain Y89_1885 PF00749 tRNA synthetases class I (E and Q), catalytic domain Y89_1886 PF00440 Bacterial regulatory proteins, tetR family Y89_1887 PF12146 Putative lysophospholipase Y89_1888 PF01081 KDPG and KHG aldolase Y89_1889 PF13279 Thioesterase-like superfamily Y89_1890 PF01207 Dihydrouridine synthase (Dus) Y89_1891 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_1892 PF00583 Acetyltransferase (GNAT) family Y89_1892 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_1893 PF00011 Hsp20/alpha crystallin family Y89_1894 PF13472 GDSL-like Lipase/Acylhydrolase family Y89_1895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1895 PF03466 LysR substrate binding domain Y89_1896 PF01042 Endoribonuclease L-PSP Y89_1897 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_1897 PF03466 LysR substrate binding domain Y89_1898 PF00330 Aconitase family (aconitate hydratase) Y89_1899 PF00694 Aconitase C-terminal domain Y89_1900 PF08241 Methyltransferase domain Y89_1901 PF00180 Isocitrate/isopropylmalate dehydrogenase Y89_1902 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y89_1902 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y89_1903 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y89_1903 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y89_1905 PF01416 tRNA pseudouridine synthase Y89_1906 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Y89_1907 PF01039 Carboxyl transferase domain Y89_1908 PF08245 Mur ligase middle domain Y89_1909 PF05036 Sporulation related domain Y89_1910 PF02674 Y89_1910 Y89_1911 PF00156 Phosphoribosyl transferase domain Y89_1911 PF13522 Glutamine amidotransferase domain Y89_1912 PF01053 Cys/Met metabolism PLP-dependent enzyme Y89_1913 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_1914 PF00263 Y89_1914 Y89_1914 PF03958 Bacterial type II/III secretion system short domain Y89_1915 PF11356 Type IV pilus biogenesis Y89_1916 PF00437 Type II/IV secretion system protein Y89_1917 PF00482 Type II secretion system (T2SS), protein F Y89_1918 PF07963 Prokaryotic N-terminal methylation motif Y89_1918 PF08334 Type II secretion system (T2SS), protein G Y89_1919 PF07963 Prokaryotic N-terminal methylation motif Y89_1919 PF12019 Type II transport protein GspH Y89_1920 PF02501 Type II secretion system (T2SS), protein I Y89_1920 PF07963 Prokaryotic N-terminal methylation motif Y89_1921 PF07963 Prokaryotic N-terminal methylation motif Y89_1921 PF11612 Type II secretion system (T2SS), protein J Y89_1922 PF03934 Type II secretion system (T2SS), protein K Y89_1923 PF05134 Type II secretion system (T2SS), protein L Y89_1923 PF12693 GspL periplasmic domain Y89_1924 PF04612 Type II secretion system (T2SS), protein M Y89_1925 PF12625 Y89_1925 Y89_1925 PF12833 Helix-turn-helix domain Y89_1926 PF00795 Carbon-nitrogen hydrolase Y89_1927 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_1927 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_1929 PF00291 Pyridoxal-phosphate dependent enzyme Y89_1930 PF08907 Y89_1930 Y89_1931 PF01513 ATP-NAD kinase Y89_1932 PF00149 Calcineurin-like phosphoesterase Y89_1933 PF01694 Rhomboid family Y89_1933 PF16733 Y89_1933 Y89_1934 PF07023 Y89_1934 Y89_1935 PF10977 Y89_1935 Y89_1936 PF01433 Peptidase family M1 Y89_1936 PF11940 Domain of unknown function (DUF3458) Y89_1936 PF17432 Y89_1936 Y89_1937 PF06980 Y89_1937 Y89_1938 PF07044 Protein of unknown function (DUF1329) Y89_1939 PF14870 Photosynthesis system II assembly factor YCF48 Y89_1939 PF15899 Y89_1939 Y89_1940 PF02460 Y89_1940 Y89_1940 PF03176 MMPL family Y89_1941 PF00512 His Kinase A (phospho-acceptor) domain Y89_1942 PF00072 Response regulator receiver domain Y89_1942 PF00486 Transcriptional regulatory protein, C terminal Y89_1943 PF12740 Chlorophyllase enzyme Y89_1944 PF13584 Y89_1944 Y89_1945 PF00515 Tetratricopeptide repeat Y89_1945 PF13519 von Willebrand factor type A domain Y89_1946 PF00092 von Willebrand factor type A domain Y89_1947 PF14316 Y89_1947 Y89_1948 PF01882 Y89_1948 Y89_1949 PF07726 ATPase family associated with various cellular activities (AAA) Y89_1951 PF05088 Y89_1951 Y89_1952 PF13463 Winged helix DNA-binding domain Y89_1953 PF00857 Isochorismatase family Y89_1954 PF13515 Y89_1954 Y89_1955 PF03537 Glycoside-hydrolase family GH114 Y89_1956 PF13429 Tetratricopeptide repeat Y89_1956 PF14559 Tetratricopeptide repeat Y89_1958 PF13492 GAF domain Y89_1958 PF16963 Y89_1958 Y89_1960 PF11997 Y89_1960 Y89_1960 PF13692 Glycosyl transferases group 1 Y89_1961 PF16933 Y89_1961 Y89_1963 PF13560 Helix-turn-helix domain Y89_1965 PF00246 Zinc carboxypeptidase Y89_1966 PF00561 alpha/beta hydrolase fold Y89_1968 PF11197 Y89_1968 Y89_1969 PF01180 Dihydroorotate dehydrogenase Y89_1970 PF04957 Ribosome modulation factor Y89_1971 PF01170 Putative RNA methylase family UPF0020 Y89_1971 PF02926 THUMP domain Y89_1971 PF10672 S-adenosylmethionine-dependent methyltransferase Y89_1972 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Y89_1973 PF04320 Y89_1973 Y89_1974 PF00072 Response regulator receiver domain Y89_1974 PF00196 Bacterial regulatory proteins, luxR family Y89_1975 PF00072 Response regulator receiver domain Y89_1975 PF00512 His Kinase A (phospho-acceptor) domain Y89_1975 PF01627 Hpt domain Y89_1975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_1975 PF08448 PAS fold Y89_1976 PF01966 HD domain Y89_1978 PF07332 Y89_1978 Y89_1979 PF05957 Y89_1979 Y89_1980 PF00909 Ammonium Transporter Family Y89_1981 PF03573 outer membrane porin, OprD family Y89_1982 PF00753 Metallo-beta-lactamase superfamily Y89_1983 PF01243 Pyridoxamine 5'-phosphate oxidase Y89_1984 PF00043 Glutathione S-transferase, C-terminal domain Y89_1984 PF13417 Glutathione S-transferase, N-terminal domain Y89_1985 PF00440 Bacterial regulatory proteins, tetR family Y89_1986 PF05768 Glutaredoxin-like domain (DUF836) Y89_1988 PF06004 Bacterial protein of unknown function (DUF903) Y89_1989 PF12804 MobA-like NTP transferase domain Y89_1990 PF00994 Probable molybdopterin binding domain Y89_1991 PF00994 Probable molybdopterin binding domain Y89_1991 PF03453 MoeA N-terminal region (domain I and II) Y89_1991 PF03454 MoeA C-terminal region (domain IV) Y89_1992 PF12625 Y89_1992 Y89_1992 PF12833 Helix-turn-helix domain Y89_1993 PF01565 FAD binding domain Y89_1993 PF02913 FAD linked oxidases, C-terminal domain Y89_1994 PF01266 FAD dependent oxidoreductase Y89_1994 PF16901 Y89_1994 Y89_1995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y89_1995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y89_1996 PF00781 Diacylglycerol kinase catalytic domain Y89_1997 PF03473 MOSC domain Y89_1997 PF03476 MOSC N-terminal beta barrel domain Y89_1998 PF07007 Protein of unknown function (DUF1311) Y89_1999 PF01464 Transglycosylase SLT domain Y89_1999 PF14718 Soluble lytic murein transglycosylase L domain Y89_2000 PF00005 ABC transporter Y89_2000 PF12848 ABC transporter Y89_2000 PF16326 Y89_2000 Y89_2002 PF00582 Universal stress protein family Y89_2005 PF00378 Enoyl-CoA hydratase/isomerase family Y89_2005 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_2005 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_2006 PF00108 Thiolase, N-terminal domain Y89_2006 PF02803 Thiolase, C-terminal domain Y89_2007 PF07866 Protein of unknown function (DUF1653) Y89_2008 PF01131 DNA topoisomerase Y89_2008 PF01396 Y89_2008 Y89_2008 PF01751 Toprim domain Y89_2008 PF08272 Topoisomerase I zinc-ribbon-like Y89_2011 PF03846 Cell division inhibitor SulA Y89_2012 PF00717 Peptidase S24-like Y89_2012 PF01726 LexA DNA binding domain Y89_2013 PF00440 Bacterial regulatory proteins, tetR family Y89_2014 PF00933 Glycosyl hydrolase family 3 N terminal domain Y89_2015 PF01048 Phosphorylase superfamily Y89_2016 PF10972 Y89_2016 Y89_2017 PF00270 DEAD/DEAH box helicase Y89_2017 PF00271 Helicase conserved C-terminal domain Y89_2017 PF02559 CarD-like/TRCF domain Y89_2017 PF03461 TRCF domain Y89_2018 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y89_2018 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Y89_2019 PF00324 Amino acid permease Y89_2020 PF05896 Y89_2020 Y89_2020 PF11973 Y89_2020 Y89_2021 PF03116 Y89_2021 Y89_2022 PF04205 FMN-binding domain Y89_2023 PF02508 Y89_2023 Y89_2024 PF02508 Y89_2024 Y89_2025 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_2025 PF00175 Oxidoreductase NAD-binding domain Y89_2025 PF00970 Oxidoreductase FAD-binding domain Y89_2026 PF02424 ApbE family Y89_2027 PF04400 Y89_2027 Y89_2028 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y89_2028 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_2029 PF03009 Glycerophosphoryl diester phosphodiesterase family Y89_2031 PF07238 PilZ domain Y89_2032 PF02687 Y89_2032 Y89_2032 PF12704 MacB-like periplasmic core domain Y89_2033 PF00005 ABC transporter Y89_2034 PF02687 Y89_2034 Y89_2034 PF12704 MacB-like periplasmic core domain Y89_2035 PF09835 Y89_2035 Y89_2036 PF00753 Metallo-beta-lactamase superfamily Y89_2036 PF03772 Y89_2036 Y89_2036 PF13567 Y89_2036 Y89_2037 PF01618 Y89_2037 Y89_2038 PF02472 Biopolymer transport protein ExbD/TolR Y89_2039 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Y89_2040 PF03966 Trm112p-like protein Y89_2041 PF02348 Cytidylyltransferase Y89_2042 PF01451 Low molecular weight phosphotyrosine protein phosphatase Y89_2043 PF01565 FAD binding domain Y89_2043 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Y89_2044 PF00575 S1 RNA binding domain Y89_2044 PF10150 Ribonuclease E/G family Y89_2045 PF00849 RNA pseudouridylate synthase Y89_2045 PF01479 S4 domain Y89_2046 PF13419 Haloacid dehalogenase-like hydrolase Y89_2047 PF01343 Peptidase family S49 Y89_2048 PF02545 Maf-like protein Y89_2049 PF02620 Y89_2049 Y89_2050 PF01783 Ribosomal L32p protein family Y89_2051 PF02504 Fatty acid synthesis protein Y89_2052 PF00698 Acyl transferase domain Y89_2053 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_2054 PF00550 Phosphopantetheine attachment site Y89_2055 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_2055 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_2056 PF01063 Aminotransferase class IV Y89_2057 PF02618 YceG-like family Y89_2058 PF02223 Thymidylate kinase Y89_2059 PF09115 DNA polymerase III, delta subunit, C terminal Y89_2059 PF13177 DNA polymerase III, delta subunit Y89_2060 PF07238 PilZ domain Y89_2061 PF01026 TatD related DNase Y89_2062 PF00266 Aminotransferase class-V Y89_2063 PF00440 Bacterial regulatory proteins, tetR family Y89_2063 PF13305 WHG domain Y89_2064 PF04055 Radical SAM superfamily Y89_2065 PF16105 Y89_2065 Y89_2066 PF06938 Protein of unknown function (DUF1285) Y89_2067 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase Y89_2067 PF13450 NAD(P)-binding Rossmann-like domain Y89_2068 PF01012 Electron transfer flavoprotein domain Y89_2069 PF00766 Electron transfer flavoprotein FAD-binding domain Y89_2069 PF01012 Electron transfer flavoprotein domain Y89_2070 PF07055 Enoyl reductase FAD binding domain Y89_2070 PF12241 Trans-2-enoyl-CoA reductase catalytic region Y89_2070 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Y89_2071 PF12697 Alpha/beta hydrolase family Y89_2072 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_2073 PF01890 Cobalamin synthesis G C-terminus Y89_2074 PF09490 Y89_2074 Y89_2075 PF09489 Y89_2075 Y89_2076 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y89_2076 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y89_2077 PF02514 Y89_2077 Y89_2078 PF00793 DAHP synthetase I family Y89_2080 PF13519 von Willebrand factor type A domain Y89_2081 PF00108 Thiolase, N-terminal domain Y89_2081 PF02803 Thiolase, C-terminal domain Y89_2082 PF02225 PA domain Y89_2082 PF04389 Peptidase family M28 Y89_2083 PF00860 Permease family Y89_2085 PF01292 Prokaryotic cytochrome b561 Y89_2088 PF12697 Alpha/beta hydrolase family Y89_2089 PF07690 Major Facilitator Superfamily Y89_2090 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_2091 PF00440 Bacterial regulatory proteins, tetR family Y89_2092 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2092 PF03466 LysR substrate binding domain Y89_2093 PF01810 Y89_2093 Y89_2096 PF00005 ABC transporter Y89_2097 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2098 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2099 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_2100 PF01546 Peptidase family M20/M25/M40 Y89_2100 PF07687 Peptidase dimerisation domain Y89_2101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2101 PF03466 LysR substrate binding domain Y89_2102 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2102 PF00672 HAMP domain Y89_2102 PF12729 Y89_2102 Y89_2104 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_2105 PF02311 AraC-like ligand binding domain Y89_2105 PF12833 Helix-turn-helix domain Y89_2106 PF01810 Y89_2106 Y89_2107 PF00753 Metallo-beta-lactamase superfamily Y89_2108 PF01032 FecCD transport family Y89_2109 PF01497 Periplasmic binding protein Y89_2110 PF00005 ABC transporter Y89_2111 PF00593 TonB dependent receptor Y89_2111 PF07715 TonB-dependent Receptor Plug Domain Y89_2112 PF02659 Y89_2112 Y89_2113 PF02571 Y89_2113 Y89_2114 PF01888 CbiD Y89_2115 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_2116 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y89_2116 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y89_2117 PF02570 Precorrin-8X methylmutase Y89_2118 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_2119 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_2119 PF11760 Cobalamin synthesis G N-terminal Y89_2120 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_2121 PF14346 Domain of unknown function (DUF4398) Y89_2122 PF00691 OmpA family Y89_2122 PF14346 Domain of unknown function (DUF4398) Y89_2123 PF00072 Response regulator receiver domain Y89_2123 PF00196 Bacterial regulatory proteins, luxR family Y89_2125 PF00155 Aminotransferase class I and II Y89_2125 PF00392 Bacterial regulatory proteins, gntR family Y89_2126 PF04542 Sigma-70 region 2 Y89_2126 PF08281 Sigma-70, region 4 Y89_2129 PF00501 AMP-binding enzyme Y89_2129 PF13193 AMP-binding enzyme C-terminal domain Y89_2130 PF00106 short chain dehydrogenase Y89_2131 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Y89_2131 PF00364 Biotin-requiring enzyme Y89_2131 PF02785 Biotin carboxylase C-terminal domain Y89_2131 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_2132 PF00378 Enoyl-CoA hydratase/isomerase family Y89_2133 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2133 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2133 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2134 PF01039 Carboxyl transferase domain Y89_2135 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_2136 PF07287 Y89_2136 Y89_2137 PF00440 Bacterial regulatory proteins, tetR family Y89_2138 PF02517 CAAX protease self-immunity Y89_2139 PF11446 Y89_2139 Y89_2140 PF00512 His Kinase A (phospho-acceptor) domain Y89_2140 PF00571 CBS domain Y89_2140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2141 PF00072 Response regulator receiver domain Y89_2142 PF05232 Y89_2142 Y89_2143 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2143 PF03466 LysR substrate binding domain Y89_2144 PF06041 Bacterial protein of unknown function (DUF924) Y89_2145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2145 PF03466 LysR substrate binding domain Y89_2146 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Y89_2147 PF07726 ATPase family associated with various cellular activities (AAA) Y89_2148 PF01882 Y89_2148 Y89_2149 PF01841 Transglutaminase-like superfamily Y89_2149 PF11992 Y89_2149 Y89_2149 PF13559 Y89_2149 Y89_2150 PF05235 CHAD domain Y89_2151 PF13622 Thioesterase-like superfamily Y89_2152 PF00990 GGDEF domain Y89_2154 PF06127 Y89_2154 Y89_2155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2155 PF00672 HAMP domain Y89_2156 PF01026 TatD related DNase Y89_2157 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_2157 PF01464 Transglycosylase SLT domain Y89_2158 PF07681 Y89_2158 Y89_2159 PF03280 Proteobacterial lipase chaperone protein Y89_2160 PF00561 alpha/beta hydrolase fold Y89_2161 PF13563 2'-5' RNA ligase superfamily Y89_2163 PF01272 Transcription elongation factor, GreA/GreB, C-term Y89_2163 PF03449 Transcription elongation factor, N-terminal Y89_2165 PF00005 ABC transporter Y89_2166 PF13472 GDSL-like Lipase/Acylhydrolase family Y89_2168 PF03734 L,D-transpeptidase catalytic domain Y89_2169 PF10093 Y89_2169 Y89_2170 PF01132 Elongation factor P (EF-P) OB domain Y89_2170 PF08207 Elongation factor P (EF-P) KOW-like domain Y89_2170 PF09285 Elongation factor P, C-terminal Y89_2171 PF02566 OsmC-like protein Y89_2172 PF01047 MarR family Y89_2173 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2173 PF03466 LysR substrate binding domain Y89_2174 PF01925 Y89_2174 Y89_2175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2175 PF03466 LysR substrate binding domain Y89_2176 PF06568 Y89_2176 Y89_2177 PF06224 Y89_2177 Y89_2178 PF01474 Class-II DAHP synthetase family Y89_2179 PF01564 Spermine/spermidine synthase Y89_2180 PF00378 Enoyl-CoA hydratase/isomerase family Y89_2181 PF00270 DEAD/DEAH box helicase Y89_2181 PF00271 Helicase conserved C-terminal domain Y89_2181 PF03880 DbpA RNA binding domain Y89_2182 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Y89_2183 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2183 PF03466 LysR substrate binding domain Y89_2184 PF02321 Outer membrane efflux protein Y89_2185 PF00529 HlyD family secretion protein Y89_2185 PF16576 Y89_2185 Y89_2186 PF07690 Major Facilitator Superfamily Y89_2187 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2187 PF03466 LysR substrate binding domain Y89_2188 PF00582 Universal stress protein family Y89_2189 PF05724 Thiopurine S-methyltransferase (TPMT) Y89_2190 PF00246 Zinc carboxypeptidase Y89_2191 PF01435 Peptidase family M48 Y89_2193 PF00155 Aminotransferase class I and II Y89_2194 PF01641 SelR domain Y89_2195 PF00255 Glutathione peroxidase Y89_2196 PF01047 MarR family Y89_2197 PF00072 Response regulator receiver domain Y89_2197 PF00512 His Kinase A (phospho-acceptor) domain Y89_2197 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2198 PF05673 Protein of unknown function (DUF815) Y89_2199 PF13185 GAF domain Y89_2200 PF13417 Glutathione S-transferase, N-terminal domain Y89_2200 PF14497 Glutathione S-transferase, C-terminal domain Y89_2202 PF11747 Y89_2202 Y89_2203 PF11747 Y89_2203 Y89_2209 PF11747 Y89_2209 Y89_2210 PF08281 Sigma-70, region 4 Y89_2211 PF00027 Cyclic nucleotide-binding domain Y89_2211 PF13545 Crp-like helix-turn-helix domain Y89_2214 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2214 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2214 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2214 PF09317 Y89_2214 Y89_2215 PF01841 Transglutaminase-like superfamily Y89_2216 PF00043 Glutathione S-transferase, C-terminal domain Y89_2216 PF02798 Glutathione S-transferase, N-terminal domain Y89_2217 PF00005 ABC transporter Y89_2218 PF01061 Y89_2218 Y89_2219 PF00512 His Kinase A (phospho-acceptor) domain Y89_2219 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2220 PF00072 Response regulator receiver domain Y89_2220 PF00486 Transcriptional regulatory protein, C terminal Y89_2222 PF00127 Copper binding proteins, plastocyanin/azurin family Y89_2223 PF14489 QueF-like protein Y89_2223 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Y89_2224 PF14357 Y89_2224 Y89_2225 PF01966 HD domain Y89_2227 PF00392 Bacterial regulatory proteins, gntR family Y89_2227 PF07702 UTRA domain Y89_2228 PF13279 Thioesterase-like superfamily Y89_2229 PF04333 Y89_2229 Y89_2230 PF07238 PilZ domain Y89_2231 PF00072 Response regulator receiver domain Y89_2231 PF07228 Stage II sporulation protein E (SpoIIE) Y89_2232 PF01740 STAS domain Y89_2233 PF00923 Transaldolase Y89_2234 PF01207 Dihydrouridine synthase (Dus) Y89_2235 PF13088 BNR repeat-like domain Y89_2242 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2242 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Y89_2243 PF01546 Peptidase family M20/M25/M40 Y89_2243 PF07687 Peptidase dimerisation domain Y89_2244 PF13185 GAF domain Y89_2245 PF13443 Cro/C1-type HTH DNA-binding domain Y89_2246 PF11188 Y89_2246 Y89_2247 PF02018 Carbohydrate binding domain Y89_2247 PF13582 Metallo-peptidase family M12B Reprolysin-like Y89_2250 PF13560 Helix-turn-helix domain Y89_2252 PF13529 Peptidase_C39 like family Y89_2253 PF01226 Formate/nitrite transporter Y89_2254 PF01266 FAD dependent oxidoreductase Y89_2255 PF12158 Y89_2255 Y89_2260 PF00990 GGDEF domain Y89_2260 PF01590 GAF domain Y89_2262 PF02567 Phenazine biosynthesis-like protein Y89_2263 PF00293 NUDIX domain Y89_2265 PF00378 Enoyl-CoA hydratase/isomerase family Y89_2266 PF00440 Bacterial regulatory proteins, tetR family Y89_2268 PF04261 Dyp-type peroxidase family Y89_2269 PF12697 Alpha/beta hydrolase family Y89_2273 PF05899 Protein of unknown function (DUF861) Y89_2275 PF03573 outer membrane porin, OprD family Y89_2277 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2277 PF03466 LysR substrate binding domain Y89_2278 PF05232 Y89_2278 Y89_2280 PF03974 Ecotin Y89_2281 PF10982 Protein of unknown function (DUF2789) Y89_2283 PF05957 Y89_2283 Y89_2284 PF16703 Y89_2284 Y89_2285 PF09335 Y89_2285 Y89_2287 PF03631 Y89_2287 Y89_2288 PF12021 Y89_2288 Y89_2290 PF00565 Staphylococcal nuclease homologue Y89_2291 PF04231 Endonuclease I Y89_2292 PF11903 Y89_2292 Y89_2293 PF00557 Metallopeptidase family M24 Y89_2295 PF12021 Y89_2295 Y89_2299 PF12697 Alpha/beta hydrolase family Y89_2300 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y89_2300 PF02824 TGS domain Y89_2300 PF03129 Anticodon binding domain Y89_2300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Y89_2301 PF00707 Translation initiation factor IF-3, C-terminal domain Y89_2301 PF05198 Translation initiation factor IF-3, N-terminal domain Y89_2302 PF01632 Ribosomal protein L35 Y89_2303 PF00453 Ribosomal protein L20 Y89_2304 PF01409 tRNA synthetases class II core domain (F) Y89_2304 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Y89_2305 PF01588 Putative tRNA binding domain Y89_2305 PF03147 Ferredoxin-fold anticodon binding domain Y89_2305 PF03483 B3/4 domain Y89_2305 PF03484 tRNA synthetase B5 domain Y89_2306 PF00216 Bacterial DNA-binding protein Y89_2307 PF13411 MerR HTH family regulatory protein Y89_2308 PF00589 Phage integrase family Y89_2311 PF04002 RadC-like JAB domain Y89_2314 PF06067 Y89_2314 Y89_2315 PF02195 ParB-like nuclease domain Y89_2317 PF13560 Helix-turn-helix domain Y89_2318 PF11171 Y89_2318 Y89_2319 PF10074 Y89_2319 Y89_2320 PF12728 Helix-turn-helix domain Y89_2321 PF10134 Y89_2321 Y89_2322 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y89_2324 PF11000 Y89_2324 Y89_2325 PF10502 Signal peptidase, peptidase S26 Y89_2326 PF11843 Y89_2326 Y89_2327 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2327 PF03466 LysR substrate binding domain Y89_2328 PF03807 NADP oxidoreductase coenzyme F420-dependent Y89_2329 PF03807 NADP oxidoreductase coenzyme F420-dependent Y89_2330 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_2331 PF03807 NADP oxidoreductase coenzyme F420-dependent Y89_2332 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_2333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2333 PF03466 LysR substrate binding domain Y89_2335 PF02534 Type IV secretory system Conjugative DNA transfer Y89_2336 PF01402 Ribbon-helix-helix protein, copG family Y89_2337 PF00437 Type II/IV secretion system protein Y89_2338 PF04956 Y89_2338 Y89_2339 PF05101 Y89_2339 Y89_2340 PF03135 Y89_2340 Y89_2342 PF04610 Y89_2342 Y89_2343 PF04335 VirB8 protein Y89_2344 PF03524 Conjugal transfer protein Y89_2345 PF03743 Bacterial conjugation TrbI-like protein Y89_2346 PF14072 Y89_2346 Y89_2347 PF01507 Phosphoadenosine phosphosulfate reductase family Y89_2348 PF13476 AAA domain Y89_2349 PF01844 HNH endonuclease Y89_2351 PF14072 Y89_2351 Y89_2353 PF13560 Helix-turn-helix domain Y89_2354 PF09848 Uncharacterized conserved protein (DUF2075) Y89_2355 PF12643 Y89_2355 Y89_2356 PF08845 Y89_2356 Y89_2358 PF00069 Protein kinase domain Y89_2358 PF13086 AAA domain Y89_2358 PF13087 AAA domain Y89_2358 PF13195 Y89_2358 Y89_2359 PF13353 4Fe-4S single cluster domain Y89_2363 PF04828 Glutathione-dependent formaldehyde-activating enzyme Y89_2364 PF06983 3-demethylubiquinone-9 3-methyltransferase Y89_2365 PF04542 Sigma-70 region 2 Y89_2365 PF08281 Sigma-70, region 4 Y89_2366 PF04773 FecR protein Y89_2366 PF16220 Y89_2366 Y89_2368 PF01965 DJ-1/PfpI family Y89_2369 PF13411 MerR HTH family regulatory protein Y89_2370 PF00561 alpha/beta hydrolase fold Y89_2371 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_2372 PF00037 4Fe-4S binding domain Y89_2372 PF11953 Domain of unknown function (DUF3470) Y89_2373 PF00384 Molybdopterin oxidoreductase Y89_2373 PF01568 Molydopterin dinucleotide binding domain Y89_2373 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y89_2374 PF01638 HxlR-like helix-turn-helix Y89_2375 PF00892 EamA-like transporter family Y89_2376 PF13416 Bacterial extracellular solute-binding protein Y89_2377 PF01810 Y89_2377 Y89_2378 PF00291 Pyridoxal-phosphate dependent enzyme Y89_2379 PF05359 Y89_2379 Y89_2380 PF00004 ATPase family associated with various cellular activities (AAA) Y89_2381 PF04828 Glutathione-dependent formaldehyde-activating enzyme Y89_2382 PF05762 VWA domain containing CoxE-like protein Y89_2383 PF12625 Y89_2383 Y89_2383 PF12833 Helix-turn-helix domain Y89_2386 PF05977 Transmembrane secretion effector Y89_2387 PF03573 outer membrane porin, OprD family Y89_2388 PF07969 Amidohydrolase family Y89_2389 PF00857 Isochorismatase family Y89_2390 PF07235 Y89_2390 Y89_2391 PF12833 Helix-turn-helix domain Y89_2392 PF07759 Y89_2392 Y89_2393 PF00085 Thioredoxin Y89_2394 PF03061 Thioesterase superfamily Y89_2395 PF02082 Transcriptional regulator Y89_2396 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_2397 PF00756 Putative esterase Y89_2398 PF00593 TonB dependent receptor Y89_2398 PF07715 TonB-dependent Receptor Plug Domain Y89_2399 PF00512 His Kinase A (phospho-acceptor) domain Y89_2399 PF00672 HAMP domain Y89_2399 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2399 PF16750 Y89_2399 Y89_2400 PF00072 Response regulator receiver domain Y89_2400 PF00486 Transcriptional regulatory protein, C terminal Y89_2401 PF05954 Phage late control gene D protein (GPD) Y89_2401 PF06715 Gp5 C-terminal repeat (3 copies) Y89_2402 PF03527 Y89_2402 Y89_2402 PF05593 Y89_2402 Y89_2404 PF00291 Pyridoxal-phosphate dependent enzyme Y89_2405 PF01738 Dienelactone hydrolase family Y89_2405 PF12680 SnoaL-like domain Y89_2406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2406 PF03466 LysR substrate binding domain Y89_2407 PF00107 Zinc-binding dehydrogenase Y89_2407 PF08240 Alcohol dehydrogenase GroES-like domain Y89_2408 PF08241 Methyltransferase domain Y89_2409 PF01061 Y89_2409 Y89_2410 PF00437 Type II/IV secretion system protein Y89_2410 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Y89_2411 PF00482 Type II secretion system (T2SS), protein F Y89_2412 PF07963 Prokaryotic N-terminal methylation motif Y89_2412 PF08334 Type II secretion system (T2SS), protein G Y89_2413 PF07963 Prokaryotic N-terminal methylation motif Y89_2415 PF07963 Prokaryotic N-terminal methylation motif Y89_2416 PF03934 Type II secretion system (T2SS), protein K Y89_2418 PF10741 Y89_2418 Y89_2420 PF00816 H-NS histone family Y89_2421 PF01242 6-pyruvoyl tetrahydropterin synthase Y89_2422 PF00158 Sigma-54 interaction domain Y89_2422 PF01590 GAF domain Y89_2422 PF02954 Bacterial regulatory protein, Fis family Y89_2423 PF00042 Globin Y89_2423 PF00175 Oxidoreductase NAD-binding domain Y89_2423 PF00970 Oxidoreductase FAD-binding domain Y89_2425 PF05940 Y89_2425 Y89_2426 PF17263 Y89_2426 Y89_2429 PF03413 Peptidase propeptide and YPEB domain Y89_2430 PF03413 Peptidase propeptide and YPEB domain Y89_2431 PF00072 Response regulator receiver domain Y89_2431 PF00486 Transcriptional regulatory protein, C terminal Y89_2432 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2434 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2434 PF00672 HAMP domain Y89_2434 PF02743 Cache domain Y89_2435 PF03553 Y89_2435 Y89_2435 PF13726 Y89_2435 Y89_2436 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2436 PF00672 HAMP domain Y89_2436 PF17200 Y89_2436 Y89_2437 PF01594 Y89_2437 Y89_2438 PF08241 Methyltransferase domain Y89_2439 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Y89_2440 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Y89_2441 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Y89_2441 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Y89_2442 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Y89_2443 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Y89_2444 PF12838 4Fe-4S dicluster domain Y89_2445 PF00146 NADH dehydrogenase Y89_2446 PF00384 Molybdopterin oxidoreductase Y89_2446 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y89_2446 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Y89_2446 PF13510 2Fe-2S iron-sulfur cluster binding domain Y89_2447 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Y89_2447 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Y89_2448 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin Y89_2449 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Y89_2449 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Y89_2450 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Y89_2451 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Y89_2452 PF14539 Domain of unknown function (DUF4442) Y89_2453 PF05787 Bacterial protein of unknown function (DUF839) Y89_2454 PF00463 Isocitrate lyase family Y89_2455 PF00263 Y89_2455 Y89_2455 PF03958 Bacterial type II/III secretion system short domain Y89_2457 PF13673 Acetyltransferase (GNAT) domain Y89_2458 PF08007 Cupin superfamily protein Y89_2459 PF00206 Lyase Y89_2459 PF08328 Adenylosuccinate lyase C-terminal Y89_2460 PF00892 EamA-like transporter family Y89_2461 PF04356 Protein of unknown function (DUF489) Y89_2462 PF03054 tRNA methyl transferase Y89_2463 PF00293 NUDIX domain Y89_2464 PF03971 Monomeric isocitrate dehydrogenase Y89_2465 PF00180 Isocitrate/isopropylmalate dehydrogenase Y89_2466 PF00313 'Cold-shock' DNA-binding domain Y89_2467 PF02617 ATP-dependent Clp protease adaptor protein ClpS Y89_2468 PF00004 ATPase family associated with various cellular activities (AAA) Y89_2468 PF02861 Clp amino terminal domain Y89_2468 PF07724 AAA domain (Cdc48 subfamily) Y89_2468 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_2469 PF01176 Translation initiation factor 1A / IF-1 Y89_2470 PF04376 Y89_2470 Y89_2470 PF04377 Y89_2470 Y89_2471 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Y89_2472 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_2473 PF01580 FtsK/SpoIIIE family Y89_2473 PF09397 Ftsk gamma domain Y89_2473 PF13491 Y89_2473 Y89_2474 PF03548 Outer membrane lipoprotein carrier protein LolA Y89_2475 PF05496 Holliday junction DNA helicase ruvB N-terminus Y89_2475 PF12002 MgsA AAA+ ATPase C terminal Y89_2475 PF16193 Y89_2475 Y89_2476 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y89_2476 PF02403 Seryl-tRNA synthetase N-terminal domain Y89_2477 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_2477 PF10414 Sirohaem synthase dimerisation region Y89_2477 PF13241 Putative NAD(P)-binding Y89_2477 PF14824 Sirohaem biosynthesis protein central Y89_2478 PF13409 Glutathione S-transferase, N-terminal domain Y89_2478 PF13410 Glutathione S-transferase, C-terminal domain Y89_2479 PF00591 Glycosyl transferase family, a/b domain Y89_2479 PF02885 Glycosyl transferase family, helical bundle domain Y89_2480 PF04358 DsrC like protein Y89_2481 PF04077 DsrH like protein Y89_2482 PF02635 DsrE/DsrF-like family Y89_2483 PF02635 DsrE/DsrF-like family Y89_2484 PF01027 Inhibitor of apoptosis-promoting Bax1 Y89_2485 PF00581 Rhodanese-like domain Y89_2486 PF05995 Cysteine dioxygenase type I Y89_2487 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2487 PF03466 LysR substrate binding domain Y89_2488 PF00296 Luciferase-like monooxygenase Y89_2489 PF09084 NMT1/THI5 like Y89_2490 PF00296 Luciferase-like monooxygenase Y89_2491 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2491 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2491 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y89_2492 PF09084 NMT1/THI5 like Y89_2493 PF09084 NMT1/THI5 like Y89_2494 PF09084 NMT1/THI5 like Y89_2496 PF13416 Bacterial extracellular solute-binding protein Y89_2497 PF00196 Bacterial regulatory proteins, luxR family Y89_2498 PF00593 TonB dependent receptor Y89_2498 PF07660 Secretin and TonB N terminus short domain Y89_2498 PF07715 TonB-dependent Receptor Plug Domain Y89_2499 PF07690 Major Facilitator Superfamily Y89_2500 PF12625 Y89_2500 Y89_2500 PF12833 Helix-turn-helix domain Y89_2501 PF01494 FAD binding domain Y89_2502 PF00072 Response regulator receiver domain Y89_2502 PF00196 Bacterial regulatory proteins, luxR family Y89_2503 PF01541 GIY-YIG catalytic domain Y89_2503 PF02151 UvrB/uvrC motif Y89_2503 PF08459 UvrC Helix-hairpin-helix N-terminal Y89_2503 PF14520 Helix-hairpin-helix domain Y89_2504 PF01066 CDP-alcohol phosphatidyltransferase Y89_2505 PF00589 Phage integrase family Y89_2505 PF13356 Domain of unknown function (DUF4102) Y89_2506 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Y89_2507 PF06769 Plasmid encoded toxin Txe Y89_2508 PF12553 Y89_2508 Y89_2509 PF07916 Y89_2509 Y89_2511 PF12834 Y89_2511 Y89_2511 PF12835 Integrase Y89_2513 PF02569 Pantoate-beta-alanine ligase Y89_2514 PF00440 Bacterial regulatory proteins, tetR family Y89_2514 PF08359 YsiA-like protein, C-terminal region Y89_2515 PF00108 Thiolase, N-terminal domain Y89_2515 PF02803 Thiolase, C-terminal domain Y89_2516 PF01144 Coenzyme A transferase Y89_2517 PF01144 Coenzyme A transferase Y89_2518 PF00682 HMGL-like Y89_2519 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Y89_2519 PF00364 Biotin-requiring enzyme Y89_2519 PF02785 Biotin carboxylase C-terminal domain Y89_2519 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_2520 PF00378 Enoyl-CoA hydratase/isomerase family Y89_2521 PF01039 Carboxyl transferase domain Y89_2522 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2522 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2522 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2523 PF13411 MerR HTH family regulatory protein Y89_2524 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Y89_2524 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_2525 PF06980 Y89_2525 Y89_2526 PF07044 Protein of unknown function (DUF1329) Y89_2527 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_2528 PF12680 SnoaL-like domain Y89_2529 PF01636 Phosphotransferase enzyme family Y89_2530 PF00106 short chain dehydrogenase Y89_2531 PF07690 Major Facilitator Superfamily Y89_2532 PF00107 Zinc-binding dehydrogenase Y89_2533 PF00440 Bacterial regulatory proteins, tetR family Y89_2534 PF00067 Cytochrome P450 Y89_2535 PF13459 4Fe-4S single cluster domain Y89_2536 PF00732 GMC oxidoreductase Y89_2536 PF05199 GMC oxidoreductase Y89_2537 PF00171 Aldehyde dehydrogenase family Y89_2538 PF06980 Y89_2538 Y89_2539 PF07044 Protein of unknown function (DUF1329) Y89_2540 PF12697 Alpha/beta hydrolase family Y89_2541 PF12833 Helix-turn-helix domain Y89_2542 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2542 PF03466 LysR substrate binding domain Y89_2543 PF00255 Glutathione peroxidase Y89_2544 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_2545 PF06980 Y89_2545 Y89_2546 PF07044 Protein of unknown function (DUF1329) Y89_2547 PF14870 Photosynthesis system II assembly factor YCF48 Y89_2548 PF03176 MMPL family Y89_2550 PF00378 Enoyl-CoA hydratase/isomerase family Y89_2551 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_2552 PF07690 Major Facilitator Superfamily Y89_2553 PF01593 Flavin containing amine oxidoreductase Y89_2554 PF00440 Bacterial regulatory proteins, tetR family Y89_2555 PF00067 Cytochrome P450 Y89_2557 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_2558 PF07690 Major Facilitator Superfamily Y89_2561 PF01593 Flavin containing amine oxidoreductase Y89_2562 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_2563 PF04909 Amidohydrolase Y89_2564 PF00866 Ring hydroxylating beta subunit Y89_2565 PF00355 Rieske [2Fe-2S] domain Y89_2565 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y89_2566 PF07690 Major Facilitator Superfamily Y89_2567 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_2567 PF14759 Reductase C-terminal Y89_2568 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_2569 PF07690 Major Facilitator Superfamily Y89_2570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2570 PF00672 HAMP domain Y89_2571 PF13459 4Fe-4S single cluster domain Y89_2572 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_2573 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_2574 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_2575 PF05977 Transmembrane secretion effector Y89_2576 PF01614 Bacterial transcriptional regulator Y89_2576 PF09339 IclR helix-turn-helix domain Y89_2578 PF01796 Y89_2578 Y89_2578 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) Y89_2579 PF00106 short chain dehydrogenase Y89_2580 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_2581 PF00355 Rieske [2Fe-2S] domain Y89_2581 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y89_2582 PF00866 Ring hydroxylating beta subunit Y89_2583 PF11136 Y89_2583 Y89_2584 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_2585 PF00501 AMP-binding enzyme Y89_2585 PF13193 AMP-binding enzyme C-terminal domain Y89_2586 PF00440 Bacterial regulatory proteins, tetR family Y89_2587 PF04909 Amidohydrolase Y89_2588 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_2588 PF10370 Domain of unknown function (DUF2437) Y89_2589 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_2589 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_2590 PF00108 Thiolase, N-terminal domain Y89_2590 PF02803 Thiolase, C-terminal domain Y89_2591 PF02627 Carboxymuconolactone decarboxylase family Y89_2592 PF00067 Cytochrome P450 Y89_2593 PF04909 Amidohydrolase Y89_2594 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2594 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2596 PF00378 Enoyl-CoA hydratase/isomerase family Y89_2597 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2597 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2597 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2598 PF08269 Cache domain Y89_2599 PF00892 EamA-like transporter family Y89_2600 PF04909 Amidohydrolase Y89_2601 PF00106 short chain dehydrogenase Y89_2604 PF00072 Response regulator receiver domain Y89_2604 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_2604 PF00512 His Kinase A (phospho-acceptor) domain Y89_2604 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2605 PF04352 ProQ/FINO family Y89_2607 PF02525 Flavodoxin-like fold Y89_2608 PF03301 Tryptophan 2,3-dioxygenase Y89_2609 PF00583 Acetyltransferase (GNAT) family Y89_2610 PF01037 AsnC family Y89_2610 PF13412 Winged helix-turn-helix DNA-binding Y89_2611 PF00892 EamA-like transporter family Y89_2612 PF00881 Nitroreductase family Y89_2613 PF00487 Y89_2613 Y89_2614 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2614 PF00672 HAMP domain Y89_2615 PF00072 Response regulator receiver domain Y89_2615 PF13487 HD domain Y89_2616 PF00512 His Kinase A (phospho-acceptor) domain Y89_2616 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2617 PF07828 PA-IL-like protein Y89_2620 PF00563 EAL domain Y89_2620 PF00990 GGDEF domain Y89_2620 PF01590 GAF domain Y89_2622 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_2623 PF07849 Y89_2623 Y89_2624 PF13649 Methyltransferase domain Y89_2625 PF00916 Y89_2625 Y89_2625 PF01740 STAS domain Y89_2626 PF11776 Domain of unknown function (DUF3315) Y89_2627 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_2627 PF00672 HAMP domain Y89_2630 PF16304 Y89_2630 Y89_2632 PF02308 Y89_2632 Y89_2633 PF00501 AMP-binding enzyme Y89_2633 PF13193 AMP-binding enzyme C-terminal domain Y89_2634 PF12625 Y89_2634 Y89_2634 PF12833 Helix-turn-helix domain Y89_2635 PF00501 AMP-binding enzyme Y89_2635 PF13193 AMP-binding enzyme C-terminal domain Y89_2636 PF00106 short chain dehydrogenase Y89_2637 PF00108 Thiolase, N-terminal domain Y89_2637 PF02803 Thiolase, C-terminal domain Y89_2638 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2638 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2638 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2639 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2639 PF03466 LysR substrate binding domain Y89_2640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_2640 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2642 PF03741 Y89_2642 Y89_2643 PF00691 OmpA family Y89_2643 PF12849 PBP superfamily domain Y89_2644 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2644 PF03466 LysR substrate binding domain Y89_2645 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_2646 PF03372 Endonuclease/Exonuclease/phosphatase family Y89_2647 PF13508 Acetyltransferase (GNAT) domain Y89_2648 PF01103 Surface antigen Y89_2648 PF07244 Surface antigen variable number repeat Y89_2648 PF17243 Y89_2648 Y89_2649 PF04357 Y89_2649 Y89_2650 PF01066 CDP-alcohol phosphatidyltransferase Y89_2651 PF12146 Putative lysophospholipase Y89_2651 PF12147 Y89_2651 Y89_2652 PF00782 Dual specificity phosphatase, catalytic domain Y89_2654 PF01553 Acyltransferase Y89_2655 PF01148 Cytidylyltransferase family Y89_2656 PF00248 Aldo/keto reductase family Y89_2657 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2657 PF03466 LysR substrate binding domain Y89_2658 PF01235 Y89_2658 Y89_2659 PF08534 Redoxin Y89_2660 PF00155 Aminotransferase class I and II Y89_2661 PF01523 Putative modulator of DNA gyrase Y89_2662 PF01523 Putative modulator of DNA gyrase Y89_2663 PF13437 HlyD family secretion protein Y89_2663 PF13533 Biotin-lipoyl like Y89_2664 PF00873 AcrB/AcrD/AcrF family Y89_2665 PF00873 AcrB/AcrD/AcrF family Y89_2666 PF02321 Outer membrane efflux protein Y89_2668 PF00512 His Kinase A (phospho-acceptor) domain Y89_2668 PF00672 HAMP domain Y89_2668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2669 PF00072 Response regulator receiver domain Y89_2669 PF00486 Transcriptional regulatory protein, C terminal Y89_2670 PF02321 Outer membrane efflux protein Y89_2671 PF16576 Y89_2671 Y89_2672 PF00873 AcrB/AcrD/AcrF family Y89_2673 PF12833 Helix-turn-helix domain Y89_2673 PF14525 Y89_2673 Y89_2674 PF00355 Rieske [2Fe-2S] domain Y89_2674 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y89_2675 PF00866 Ring hydroxylating beta subunit Y89_2676 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_2676 PF00175 Oxidoreductase NAD-binding domain Y89_2676 PF00970 Oxidoreductase FAD-binding domain Y89_2677 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_2678 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_2678 PF00175 Oxidoreductase NAD-binding domain Y89_2678 PF00970 Oxidoreductase FAD-binding domain Y89_2679 PF00866 Ring hydroxylating beta subunit Y89_2680 PF00355 Rieske [2Fe-2S] domain Y89_2680 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y89_2681 PF12833 Helix-turn-helix domain Y89_2681 PF14525 Y89_2681 Y89_2682 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2682 PF03466 LysR substrate binding domain Y89_2683 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Y89_2683 PF13378 Enolase C-terminal domain-like Y89_2684 PF02426 Muconolactone delta-isomerase Y89_2685 PF00775 Dioxygenase Y89_2685 PF04444 Catechol dioxygenase N terminus Y89_2687 PF03573 outer membrane porin, OprD family Y89_2688 PF09951 Y89_2688 Y89_2688 PF10077 Y89_2688 Y89_2690 PF07714 Protein tyrosine kinase Y89_2690 PF12799 Leucine Rich repeats (2 copies) Y89_2692 PF07690 Major Facilitator Superfamily Y89_2693 PF14437 Y89_2693 Y89_2694 PF12796 Ankyrin repeats (3 copies) Y89_2695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2695 PF03466 LysR substrate binding domain Y89_2696 PF05163 DinB family Y89_2697 PF02321 Outer membrane efflux protein Y89_2698 PF00873 AcrB/AcrD/AcrF family Y89_2699 PF16576 Y89_2699 Y89_2700 PF11663 Y89_2700 Y89_2704 PF13476 AAA domain Y89_2707 PF13340 Y89_2707 Y89_2708 PF13586 Y89_2708 Y89_2709 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2709 PF03466 LysR substrate binding domain Y89_2710 PF08240 Alcohol dehydrogenase GroES-like domain Y89_2710 PF13602 Zinc-binding dehydrogenase Y89_2711 PF07883 Cupin domain Y89_2712 PF02311 AraC-like ligand binding domain Y89_2712 PF12833 Helix-turn-helix domain Y89_2713 PF02311 AraC-like ligand binding domain Y89_2713 PF12833 Helix-turn-helix domain Y89_2717 PF00440 Bacterial regulatory proteins, tetR family Y89_2718 PF00296 Luciferase-like monooxygenase Y89_2719 PF00034 Cytochrome c Y89_2719 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_2720 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_2721 PF00512 His Kinase A (phospho-acceptor) domain Y89_2721 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_2721 PF08521 Y89_2721 Y89_2722 PF00072 Response regulator receiver domain Y89_2722 PF00486 Transcriptional regulatory protein, C terminal Y89_2723 PF02683 Y89_2723 Y89_2723 PF11412 Disulphide bond corrector protein DsbC Y89_2723 PF13899 Thioredoxin-like Y89_2724 PF00578 AhpC/TSA family Y89_2725 PF13098 Thioredoxin-like domain Y89_2726 PF00067 Cytochrome P450 Y89_2727 PF13557 Y89_2727 Y89_2728 PF13417 Glutathione S-transferase, N-terminal domain Y89_2729 PF07690 Major Facilitator Superfamily Y89_2731 PF07883 Cupin domain Y89_2732 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2732 PF03466 LysR substrate binding domain Y89_2733 PF04542 Sigma-70 region 2 Y89_2733 PF08281 Sigma-70, region 4 Y89_2734 PF04773 FecR protein Y89_2734 PF16220 Y89_2734 Y89_2735 PF00593 TonB dependent receptor Y89_2735 PF07715 TonB-dependent Receptor Plug Domain Y89_2736 PF03929 Y89_2736 Y89_2738 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y89_2738 PF08479 POTRA domain, ShlB-type Y89_2738 PF17287 Y89_2738 Y89_2739 PF05594 Y89_2739 Y89_2739 PF05860 haemagglutination activity domain Y89_2739 PF13332 Y89_2739 Y89_2741 PF05593 Y89_2741 Y89_2742 PF05593 Y89_2742 Y89_2744 PF00583 Acetyltransferase (GNAT) family Y89_2745 PF13649 Methyltransferase domain Y89_2746 PF06004 Bacterial protein of unknown function (DUF903) Y89_2747 PF00756 Putative esterase Y89_2747 PF11806 Domain of unknown function (DUF3327) Y89_2749 PF00158 Sigma-54 interaction domain Y89_2749 PF13188 PAS domain Y89_2750 PF07969 Amidohydrolase family Y89_2751 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2751 PF03466 LysR substrate binding domain Y89_2752 PF01597 Glycine cleavage H-protein Y89_2753 PF02347 Glycine cleavage system P-protein Y89_2754 PF00464 Serine hydroxymethyltransferase Y89_2755 PF03313 Y89_2755 Y89_2755 PF03315 Serine dehydratase beta chain Y89_2756 PF01571 Aminomethyltransferase folate-binding domain Y89_2756 PF08669 Glycine cleavage T-protein C-terminal barrel domain Y89_2759 PF01145 SPFH domain / Band 7 family Y89_2760 PF01145 SPFH domain / Band 7 family Y89_2761 PF01145 SPFH domain / Band 7 family Y89_2763 PF00122 E1-E2 ATPase Y89_2763 PF00702 haloacid dehalogenase-like hydrolase Y89_2764 PF16304 Y89_2764 Y89_2766 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2766 PF03466 LysR substrate binding domain Y89_2767 PF04632 Y89_2767 Y89_2768 PF07869 Y89_2768 Y89_2769 PF16576 Y89_2769 Y89_2771 PF03976 Polyphosphate kinase 2 (PPK2) Y89_2773 PF04542 Sigma-70 region 2 Y89_2773 PF08281 Sigma-70, region 4 Y89_2774 PF00975 Thioesterase domain Y89_2775 PF00501 AMP-binding enzyme Y89_2775 PF00550 Phosphopantetheine attachment site Y89_2775 PF00668 Condensation domain Y89_2775 PF13193 AMP-binding enzyme C-terminal domain Y89_2776 PF02498 Y89_2776 Y89_2778 PF13557 Y89_2778 Y89_2779 PF03573 outer membrane porin, OprD family Y89_2780 PF00857 Isochorismatase family Y89_2781 PF00857 Isochorismatase family Y89_2782 PF02678 Pirin Y89_2782 PF05726 Pirin C-terminal cupin domain Y89_2783 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2783 PF03466 LysR substrate binding domain Y89_2784 PF01204 Trehalase Y89_2786 PF07995 Glucose / Sorbosone dehydrogenase Y89_2787 PF00202 Aminotransferase class-III Y89_2788 PF03621 MbtH-like protein Y89_2789 PF00975 Thioesterase domain Y89_2790 PF01297 Periplasmic solute binding protein family Y89_2791 PF00950 Y89_2791 Y89_2792 PF00005 ABC transporter Y89_2793 PF01297 Periplasmic solute binding protein family Y89_2797 PF03929 Y89_2797 Y89_2798 PF04954 Siderophore-interacting protein Y89_2798 PF08021 Siderophore-interacting FAD-binding domain Y89_2799 PF00501 AMP-binding enzyme Y89_2799 PF00550 Phosphopantetheine attachment site Y89_2799 PF00668 Condensation domain Y89_2799 PF13193 AMP-binding enzyme C-terminal domain Y89_2800 PF00501 AMP-binding enzyme Y89_2800 PF00550 Phosphopantetheine attachment site Y89_2800 PF00668 Condensation domain Y89_2800 PF00975 Thioesterase domain Y89_2800 PF13193 AMP-binding enzyme C-terminal domain Y89_2801 PF00593 TonB dependent receptor Y89_2801 PF07715 TonB-dependent Receptor Plug Domain Y89_2802 PF00005 ABC transporter Y89_2802 PF00664 ABC transporter transmembrane region Y89_2803 PF00551 Formyl transferase Y89_2804 PF03781 Sulfatase-modifying factor enzyme 1 Y89_2805 PF00266 Aminotransferase class-V Y89_2806 PF01244 Membrane dipeptidase (Peptidase family M19) Y89_2808 PF02321 Outer membrane efflux protein Y89_2809 PF00005 ABC transporter Y89_2809 PF02687 Y89_2809 Y89_2809 PF12704 MacB-like periplasmic core domain Y89_2810 PF16576 Y89_2810 Y89_2811 PF04773 FecR protein Y89_2811 PF16220 Y89_2811 Y89_2812 PF04542 Sigma-70 region 2 Y89_2812 PF08281 Sigma-70, region 4 Y89_2813 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) Y89_2814 PF01804 Penicillin amidase Y89_2816 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2816 PF03466 LysR substrate binding domain Y89_2817 PF01070 FMN-dependent dehydrogenase Y89_2818 PF07867 Y89_2818 Y89_2820 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_2820 PF01799 [2Fe-2S] binding domain Y89_2821 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y89_2822 PF13343 Bacterial extracellular solute-binding protein Y89_2823 PF00072 Response regulator receiver domain Y89_2823 PF00196 Bacterial regulatory proteins, luxR family Y89_2824 PF14107 Y89_2824 Y89_2825 PF07661 Y89_2825 Y89_2826 PF05954 Phage late control gene D protein (GPD) Y89_2826 PF06715 Gp5 C-terminal repeat (3 copies) Y89_2827 PF14891 Effector protein Y89_2829 PF00004 ATPase family associated with various cellular activities (AAA) Y89_2829 PF02861 Clp amino terminal domain Y89_2829 PF07724 AAA domain (Cdc48 subfamily) Y89_2829 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_2830 PF06996 Y89_2830 Y89_2831 PF05947 Y89_2831 Y89_2832 PF04965 Gene 25-like lysozyme Y89_2833 PF05638 Protein of unknown function (DUF796) Y89_2834 PF05943 Y89_2834 Y89_2835 PF05591 Y89_2835 Y89_2837 PF05936 Y89_2837 Y89_2838 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) Y89_2839 PF14331 Y89_2839 Y89_2840 PF06812 Y89_2840 Y89_2843 PF03358 NADPH-dependent FMN reductase Y89_2844 PF00296 Luciferase-like monooxygenase Y89_2845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2845 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y89_2846 PF00158 Sigma-54 interaction domain Y89_2847 PF03969 AFG1-like ATPase Y89_2848 PF03009 Glycerophosphoryl diester phosphodiesterase family Y89_2849 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2850 PF00005 ABC transporter Y89_2850 PF09383 NIL domain Y89_2851 PF03180 NLPA lipoprotein Y89_2852 PF00296 Luciferase-like monooxygenase Y89_2853 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2853 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y89_2854 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2854 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2854 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y89_2856 PF08765 Mor transcription activator family Y89_2857 PF06252 Y89_2857 Y89_2860 PF10979 Y89_2860 Y89_2861 PF11363 Y89_2861 Y89_2866 PF13401 AAA domain Y89_2867 PF00665 Integrase core domain Y89_2869 PF09339 IclR helix-turn-helix domain Y89_2876 PF13272 Y89_2876 Y89_2878 PF01464 Transglycosylase SLT domain Y89_2883 PF11985 Y89_2883 Y89_2885 PF06074 Y89_2885 Y89_2886 PF04233 Y89_2886 Y89_2887 PF05069 Y89_2887 Y89_2893 PF07030 Y89_2893 Y89_2899 PF06791 Y89_2899 Y89_2899 PF09718 Y89_2899 Y89_2903 PF09356 Y89_2903 Y89_2903 PF09931 Y89_2903 Y89_2905 PF13550 Y89_2905 Y89_2910 PF00294 pfkB family carbohydrate kinase Y89_2911 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y89_2911 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y89_2912 PF01232 Mannitol dehydrogenase Rossmann domain Y89_2912 PF08125 Mannitol dehydrogenase C-terminal domain Y89_2913 PF00005 ABC transporter Y89_2913 PF08402 TOBE domain Y89_2914 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2915 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2916 PF01547 Bacterial extracellular solute-binding protein Y89_2917 PF12833 Helix-turn-helix domain Y89_2918 PF05935 Arylsulfotransferase (ASST) Y89_2919 PF00593 TonB dependent receptor Y89_2919 PF07715 TonB-dependent Receptor Plug Domain Y89_2920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2920 PF03466 LysR substrate binding domain Y89_2921 PF00884 Sulfatase Y89_2922 PF12833 Helix-turn-helix domain Y89_2922 PF12852 Cupin Y89_2923 PF02627 Carboxymuconolactone decarboxylase family Y89_2924 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2925 PF00005 ABC transporter Y89_2926 PF13379 NMT1-like family Y89_2927 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2928 PF00296 Luciferase-like monooxygenase Y89_2929 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2929 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2929 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y89_2930 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_2930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_2930 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Y89_2931 PF00171 Aldehyde dehydrogenase family Y89_2933 PF02447 Y89_2933 Y89_2934 PF13671 AAA domain Y89_2935 PF00356 Bacterial regulatory proteins, lacI family Y89_2935 PF13377 Periplasmic binding protein-like domain Y89_2936 PF05899 Protein of unknown function (DUF861) Y89_2937 PF01266 FAD dependent oxidoreductase Y89_2938 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2938 PF03466 LysR substrate binding domain Y89_2939 PF00144 Beta-lactamase Y89_2940 PF07690 Major Facilitator Superfamily Y89_2942 PF01381 Helix-turn-helix Y89_2942 PF07883 Cupin domain Y89_2944 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y89_2945 PF13379 NMT1-like family Y89_2946 PF00005 ABC transporter Y89_2947 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2948 PF01810 Y89_2948 Y89_2949 PF00501 AMP-binding enzyme Y89_2949 PF00550 Phosphopantetheine attachment site Y89_2949 PF00668 Condensation domain Y89_2949 PF13193 AMP-binding enzyme C-terminal domain Y89_2950 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y89_2951 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y89_2952 PF00501 AMP-binding enzyme Y89_2952 PF00550 Phosphopantetheine attachment site Y89_2952 PF00668 Condensation domain Y89_2952 PF00975 Thioesterase domain Y89_2952 PF05050 Methyltransferase FkbM domain Y89_2953 PF04073 Aminoacyl-tRNA editing domain Y89_2954 PF00704 Glycosyl hydrolases family 18 Y89_2955 PF00392 Bacterial regulatory proteins, gntR family Y89_2955 PF07702 UTRA domain Y89_2956 PF00890 FAD binding domain Y89_2956 PF02910 Fumarate reductase flavoprotein C-term Y89_2957 PF13187 4Fe-4S dicluster domain Y89_2958 PF13379 NMT1-like family Y89_2959 PF00528 Binding-protein-dependent transport system inner membrane component Y89_2960 PF00005 ABC transporter Y89_2961 PF13646 HEAT repeats Y89_2963 PF04966 Carbohydrate-selective porin, OprB family Y89_2964 PF01011 PQQ enzyme repeat Y89_2964 PF13360 PQQ-like domain Y89_2965 PF00593 TonB dependent receptor Y89_2965 PF07715 TonB-dependent Receptor Plug Domain Y89_2968 PF01435 Peptidase family M48 Y89_2971 PF01435 Peptidase family M48 Y89_2973 PF12833 Helix-turn-helix domain Y89_2974 PF03358 NADPH-dependent FMN reductase Y89_2975 PF01451 Low molecular weight phosphotyrosine protein phosphatase Y89_2976 PF02040 Y89_2976 Y89_2977 PF01022 Bacterial regulatory protein, arsR family Y89_2978 PF06719 Y89_2978 Y89_2978 PF12833 Helix-turn-helix domain Y89_2979 PF00107 Zinc-binding dehydrogenase Y89_2979 PF08240 Alcohol dehydrogenase GroES-like domain Y89_2980 PF03992 Antibiotic biosynthesis monooxygenase Y89_2981 PF00376 MerR family regulatory protein Y89_2981 PF09278 MerR, DNA binding Y89_2982 PF00905 Penicillin binding protein transpeptidase domain Y89_2982 PF03717 Penicillin-binding Protein dimerisation domain Y89_2983 PF13673 Acetyltransferase (GNAT) domain Y89_2984 PF00440 Bacterial regulatory proteins, tetR family Y89_2986 PF00117 Glutamine amidotransferase class-I Y89_2986 PF03992 Antibiotic biosynthesis monooxygenase Y89_2987 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2987 PF03466 LysR substrate binding domain Y89_2988 PF00034 Cytochrome c Y89_2988 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_2989 PF00732 GMC oxidoreductase Y89_2989 PF05199 GMC oxidoreductase Y89_2990 PF13618 Y89_2990 Y89_2991 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_2991 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_2992 PF07690 Major Facilitator Superfamily Y89_2993 PF00294 pfkB family carbohydrate kinase Y89_2994 PF01261 Xylose isomerase-like TIM barrel Y89_2995 PF00356 Bacterial regulatory proteins, lacI family Y89_2995 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y89_2996 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_2996 PF03466 LysR substrate binding domain Y89_2997 PF00034 Cytochrome c Y89_2997 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_2998 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal Y89_2998 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal Y89_2999 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y89_3000 PF05141 Pyoverdine/dityrosine biosynthesis protein Y89_3001 PF00710 Asparaginase Y89_3002 PF01235 Y89_3002 Y89_3004 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y89_3004 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_3005 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Y89_3005 PF00364 Biotin-requiring enzyme Y89_3005 PF02817 e3 binding domain Y89_3006 PF02779 Transketolase, pyrimidine binding domain Y89_3006 PF02780 Transketolase, C-terminal domain Y89_3007 PF00676 Dehydrogenase E1 component Y89_3007 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal Y89_3009 PF01037 AsnC family Y89_3009 PF13412 Winged helix-turn-helix DNA-binding Y89_3011 PF01028 Eukaryotic DNA topoisomerase I, catalytic core Y89_3012 PF00890 FAD binding domain Y89_3013 PF01757 Y89_3013 Y89_3014 PF03023 Y89_3014 Y89_3016 PF13439 Glycosyltransferase Family 4 Y89_3016 PF13692 Glycosyl transferases group 1 Y89_3017 PF13579 Glycosyl transferase 4-like domain Y89_3017 PF13692 Glycosyl transferases group 1 Y89_3018 PF00150 Cellulase (glycosyl hydrolase family 5) Y89_3019 PF00534 Glycosyl transferases group 1 Y89_3020 PF13807 Y89_3020 Y89_3021 PF02563 Polysaccharide biosynthesis/export protein Y89_3022 PF13641 Glycosyltransferase like family 2 Y89_3023 PF00483 Nucleotidyl transferase Y89_3023 PF01050 Mannose-6-phosphate isomerase Y89_3024 PF02397 Y89_3024 Y89_3024 PF13727 CoA-binding domain Y89_3026 PF03473 MOSC domain Y89_3026 PF03475 3-alpha domain Y89_3027 PF00144 Beta-lactamase Y89_3028 PF12625 Y89_3028 Y89_3028 PF12833 Helix-turn-helix domain Y89_3030 PF00665 Integrase core domain Y89_3030 PF13565 Y89_3030 Y89_3033 PF13556 PucR C-terminal helix-turn-helix domain Y89_3034 PF05721 Phytanoyl-CoA dioxygenase (PhyH) Y89_3035 PF14870 Photosynthesis system II assembly factor YCF48 Y89_3036 PF03176 MMPL family Y89_3037 PF06980 Y89_3037 Y89_3038 PF07044 Protein of unknown function (DUF1329) Y89_3040 PF01266 FAD dependent oxidoreductase Y89_3041 PF05721 Phytanoyl-CoA dioxygenase (PhyH) Y89_3042 PF00440 Bacterial regulatory proteins, tetR family Y89_3043 PF00743 Flavin-binding monooxygenase-like Y89_3043 PF13450 NAD(P)-binding Rossmann-like domain Y89_3044 PF00561 alpha/beta hydrolase fold Y89_3045 PF00465 Iron-containing alcohol dehydrogenase Y89_3046 PF00324 Amino acid permease Y89_3047 PF00171 Aldehyde dehydrogenase family Y89_3048 PF00202 Aminotransferase class-III Y89_3049 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y89_3051 PF00474 Sodium:solute symporter family Y89_3052 PF04341 Y89_3052 Y89_3053 PF00501 AMP-binding enzyme Y89_3053 PF13193 AMP-binding enzyme C-terminal domain Y89_3054 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_3055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_3055 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_3055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_3057 PF01636 Phosphotransferase enzyme family Y89_3058 PF00158 Sigma-54 interaction domain Y89_3058 PF02954 Bacterial regulatory protein, Fis family Y89_3058 PF06506 Propionate catabolism activator Y89_3058 PF08448 PAS fold Y89_3060 PF02470 Y89_3060 Y89_3061 PF04403 Y89_3061 Y89_3062 PF00171 Aldehyde dehydrogenase family Y89_3064 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Y89_3064 PF13378 Enolase C-terminal domain-like Y89_3065 PF07690 Major Facilitator Superfamily Y89_3066 PF03573 outer membrane porin, OprD family Y89_3067 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Y89_3068 PF04909 Amidohydrolase Y89_3069 PF07690 Major Facilitator Superfamily Y89_3070 PF03401 Tripartite tricarboxylate transporter family receptor Y89_3071 PF07331 Y89_3071 Y89_3072 PF01970 Y89_3072 Y89_3073 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3073 PF03466 LysR substrate binding domain Y89_3075 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_3076 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3077 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3078 PF08929 Domain of unknown function (DUF1911) Y89_3079 PF00563 EAL domain Y89_3079 PF12792 Y89_3079 Y89_3080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y89_3080 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y89_3081 PF03992 Antibiotic biosynthesis monooxygenase Y89_3082 PF00107 Zinc-binding dehydrogenase Y89_3082 PF16884 Y89_3082 Y89_3083 PF00440 Bacterial regulatory proteins, tetR family Y89_3083 PF16925 Y89_3083 Y89_3084 PF01266 FAD dependent oxidoreductase Y89_3085 PF04324 BFD-like [2Fe-2S] binding domain Y89_3085 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_3086 PF13510 2Fe-2S iron-sulfur cluster binding domain Y89_3087 PF00571 CBS domain Y89_3088 PF03497 Anthrax toxin LF subunit Y89_3089 PF10685 Y89_3089 Y89_3090 PF00574 Clp protease Y89_3091 PF04120 Y89_3091 Y89_3092 PF04107 Glutamate-cysteine ligase family 2(GCS2) Y89_3093 PF14518 Iron-containing redox enzyme Y89_3094 PF05175 Methyltransferase small domain Y89_3096 PF06930 Y89_3096 Y89_3097 PF00072 Response regulator receiver domain Y89_3097 PF00512 His Kinase A (phospho-acceptor) domain Y89_3097 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3097 PF13426 PAS domain Y89_3102 PF11127 Protein of unknown function (DUF2892) Y89_3103 PF05343 M42 glutamyl aminopeptidase Y89_3104 PF01814 Hemerythrin HHE cation binding domain Y89_3105 PF13396 Y89_3105 Y89_3106 PF09537 Domain of unknown function (DUF2383) Y89_3107 PF00326 Prolyl oligopeptidase family Y89_3108 PF11379 Y89_3108 Y89_3110 PF12021 Y89_3110 Y89_3111 PF00534 Glycosyl transferases group 1 Y89_3111 PF08323 Starch synthase catalytic domain Y89_3112 PF00128 Alpha amylase, catalytic domain Y89_3112 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Y89_3112 PF11941 Domain of unknown function (DUF3459) Y89_3113 PF02446 4-alpha-glucanotransferase Y89_3114 PF00128 Alpha amylase, catalytic domain Y89_3115 PF11154 Y89_3115 Y89_3116 PF00128 Alpha amylase, catalytic domain Y89_3116 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Y89_3117 PF00571 CBS domain Y89_3118 PF00107 Zinc-binding dehydrogenase Y89_3118 PF08240 Alcohol dehydrogenase GroES-like domain Y89_3119 PF01904 Protein of unknown function DUF72 Y89_3120 PF03372 Endonuclease/Exonuclease/phosphatase family Y89_3121 PF13091 PLD-like domain Y89_3122 PF03706 Y89_3122 Y89_3123 PF00128 Alpha amylase, catalytic domain Y89_3123 PF02806 Alpha amylase, C-terminal all-beta domain Y89_3123 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Y89_3124 PF00128 Alpha amylase, catalytic domain Y89_3124 PF16657 Y89_3124 Y89_3125 PF00128 Alpha amylase, catalytic domain Y89_3125 PF11896 Domain of unknown function (DUF3416) Y89_3126 PF02735 Ku70/Ku80 beta-barrel domain Y89_3128 PF02308 Y89_3128 Y89_3130 PF00199 Catalase Y89_3130 PF01965 DJ-1/PfpI family Y89_3130 PF06628 Catalase-related immune-responsive Y89_3131 PF10685 Y89_3131 Y89_3134 PF00343 Carbohydrate phosphorylase Y89_3135 PF10711 Y89_3135 Y89_3137 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_3138 PF02464 Competence-damaged protein Y89_3139 PF02069 Prokaryotic metallothionein Y89_3140 PF13396 Y89_3140 Y89_3141 PF01068 ATP dependent DNA ligase domain Y89_3141 PF04679 ATP dependent DNA ligase C terminal region Y89_3141 PF13298 DNA polymerase Ligase (LigD) Y89_3142 PF00072 Response regulator receiver domain Y89_3145 PF00999 Sodium/hydrogen exchanger family Y89_3146 PF13628 Y89_3146 Y89_3147 PF00563 EAL domain Y89_3148 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y89_3148 PF02753 Pili assembly chaperone PapD, C-terminal domain Y89_3149 PF00419 Fimbrial protein Y89_3150 PF00577 Outer membrane usher protein Y89_3150 PF13953 PapC C-terminal domain Y89_3150 PF13954 PapC N-terminal domain Y89_3151 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y89_3151 PF02753 Pili assembly chaperone PapD, C-terminal domain Y89_3152 PF00419 Fimbrial protein Y89_3153 PF01507 Phosphoadenosine phosphosulfate reductase family Y89_3153 PF11922 Y89_3153 Y89_3154 PF02195 ParB-like nuclease domain Y89_3155 PF00171 Aldehyde dehydrogenase family Y89_3156 PF00732 GMC oxidoreductase Y89_3156 PF05199 GMC oxidoreductase Y89_3157 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3157 PF03466 LysR substrate binding domain Y89_3158 PF04116 Y89_3158 Y89_3158 PF10604 Polyketide cyclase / dehydrase and lipid transport Y89_3159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3159 PF03466 LysR substrate binding domain Y89_3160 PF12680 SnoaL-like domain Y89_3161 PF00107 Zinc-binding dehydrogenase Y89_3161 PF08240 Alcohol dehydrogenase GroES-like domain Y89_3162 PF10976 Protein of unknown function (DUF2790) Y89_3163 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y89_3163 PF02805 Metal binding domain of Ada Y89_3163 PF12833 Helix-turn-helix domain Y89_3165 PF07286 Protein of unknown function (DUF1445) Y89_3166 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3166 PF03466 LysR substrate binding domain Y89_3167 PF07690 Major Facilitator Superfamily Y89_3168 PF03573 outer membrane porin, OprD family Y89_3169 PF03746 LamB/YcsF family Y89_3170 PF02682 Allophanate hydrolase subunit 1 Y89_3171 PF02626 Allophanate hydrolase subunit 2 Y89_3172 PF13628 Y89_3172 Y89_3173 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_3173 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_3173 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_3174 PF03860 Domain of Unknown Function (DUF326) Y89_3175 PF00106 short chain dehydrogenase Y89_3176 PF07859 alpha/beta hydrolase fold Y89_3177 PF13738 Pyridine nucleotide-disulphide oxidoreductase Y89_3178 PF12625 Y89_3178 Y89_3178 PF12833 Helix-turn-helix domain Y89_3180 PF04773 FecR protein Y89_3180 PF16220 Y89_3180 Y89_3181 PF04542 Sigma-70 region 2 Y89_3181 PF04545 Sigma-70, region 4 Y89_3182 PF07690 Major Facilitator Superfamily Y89_3183 PF07690 Major Facilitator Superfamily Y89_3184 PF00296 Luciferase-like monooxygenase Y89_3185 PF00593 TonB dependent receptor Y89_3185 PF07660 Secretin and TonB N terminus short domain Y89_3185 PF07715 TonB-dependent Receptor Plug Domain Y89_3186 PF13649 Methyltransferase domain Y89_3188 PF00561 alpha/beta hydrolase fold Y89_3189 PF00866 Ring hydroxylating beta subunit Y89_3190 PF00733 Asparagine synthase Y89_3190 PF13537 Glutamine amidotransferase domain Y89_3191 PF00355 Rieske [2Fe-2S] domain Y89_3191 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y89_3192 PF01037 AsnC family Y89_3192 PF13412 Winged helix-turn-helix DNA-binding Y89_3193 PF04199 Putative cyclase Y89_3194 PF00266 Aminotransferase class-V Y89_3195 PF00324 Amino acid permease Y89_3198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3198 PF03466 LysR substrate binding domain Y89_3201 PF00795 Carbon-nitrogen hydrolase Y89_3202 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y89_3203 PF00563 EAL domain Y89_3203 PF00990 GGDEF domain Y89_3203 PF05228 Y89_3203 Y89_3204 PF00009 Elongation factor Tu GTP binding domain Y89_3204 PF00679 Elongation factor G C-terminus Y89_3204 PF03144 Elongation factor Tu domain 2 Y89_3204 PF03764 Elongation factor G, domain IV Y89_3204 PF14492 Elongation Factor G, domain II Y89_3205 PF00593 TonB dependent receptor Y89_3205 PF07715 TonB-dependent Receptor Plug Domain Y89_3206 PF02543 Carbamoyltransferase Y89_3206 PF16861 Y89_3206 Y89_3207 PF12832 MFS_1 like family Y89_3208 PF13419 Haloacid dehalogenase-like hydrolase Y89_3209 PF02698 DUF218 domain Y89_3210 PF00394 Multicopper oxidase Y89_3210 PF07731 Multicopper oxidase Y89_3210 PF07732 Multicopper oxidase Y89_3211 PF05275 Y89_3211 Y89_3212 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) Y89_3213 PF00266 Aminotransferase class-V Y89_3214 PF00005 ABC transporter Y89_3214 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y89_3215 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3216 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3217 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y89_3218 PF00593 TonB dependent receptor Y89_3218 PF07660 Secretin and TonB N terminus short domain Y89_3218 PF07715 TonB-dependent Receptor Plug Domain Y89_3219 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3219 PF03466 LysR substrate binding domain Y89_3220 PF07690 Major Facilitator Superfamily Y89_3221 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3221 PF03466 LysR substrate binding domain Y89_3222 PF00484 Carbonic anhydrase Y89_3223 PF02560 Cyanate lyase C-terminal domain Y89_3224 PF04773 FecR protein Y89_3224 PF16220 Y89_3224 Y89_3225 PF04542 Sigma-70 region 2 Y89_3225 PF08281 Sigma-70, region 4 Y89_3227 PF03992 Antibiotic biosynthesis monooxygenase Y89_3231 PF10983 Y89_3231 Y89_3232 PF13550 Y89_3232 Y89_3234 PF09356 Y89_3234 Y89_3234 PF09931 Y89_3234 Y89_3243 PF07030 Y89_3243 Y89_3244 PF10124 Y89_3244 Y89_3246 PF10123 Y89_3246 Y89_3247 PF05069 Y89_3247 Y89_3248 PF04233 Y89_3248 Y89_3249 PF06074 Y89_3249 Y89_3251 PF11985 Y89_3251 Y89_3253 PF10805 Y89_3253 Y89_3255 PF01464 Transglycosylase SLT domain Y89_3257 PF13272 Y89_3257 Y89_3264 PF00665 Integrase core domain Y89_3265 PF13401 AAA domain Y89_3269 PF11363 Y89_3269 Y89_3270 PF10979 Y89_3270 Y89_3273 PF06252 Y89_3273 Y89_3275 PF08765 Mor transcription activator family Y89_3276 PF06719 Y89_3276 Y89_3276 PF12833 Helix-turn-helix domain Y89_3278 PF01809 Y89_3278 Y89_3279 PF01841 Transglutaminase-like superfamily Y89_3279 PF12969 Domain of Unknown Function with PDB structure (DUF3857) Y89_3280 PF00849 RNA pseudouridylate synthase Y89_3281 PF00375 Sodium:dicarboxylate symporter family Y89_3282 PF00324 Amino acid permease Y89_3283 PF00120 Glutamine synthetase, catalytic domain Y89_3284 PF03591 Y89_3284 Y89_3285 PF05437 Y89_3285 Y89_3287 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_3287 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_3287 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_3288 PF13649 Methyltransferase domain Y89_3289 PF04954 Siderophore-interacting protein Y89_3289 PF08021 Siderophore-interacting FAD-binding domain Y89_3290 PF00155 Aminotransferase class I and II Y89_3290 PF00392 Bacterial regulatory proteins, gntR family Y89_3291 PF06568 Y89_3291 Y89_3293 PF09904 Winged helix-turn helix Y89_3294 PF01037 AsnC family Y89_3294 PF13412 Winged helix-turn-helix DNA-binding Y89_3296 PF13593 SBF-like CPA transporter family (DUF4137) Y89_3297 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y89_3297 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_3298 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_3299 PF00483 Nucleotidyl transferase Y89_3300 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y89_3300 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y89_3300 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y89_3302 PF00440 Bacterial regulatory proteins, tetR family Y89_3302 PF08361 MAATS-type transcriptional repressor, C-terminal region Y89_3303 PF00529 HlyD family secretion protein Y89_3303 PF16576 Y89_3303 Y89_3304 PF00873 AcrB/AcrD/AcrF family Y89_3306 PF06977 SdiA-regulated Y89_3307 PF13411 MerR HTH family regulatory protein Y89_3308 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_3308 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_3308 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_3309 PF01039 Carboxyl transferase domain Y89_3310 PF00378 Enoyl-CoA hydratase/isomerase family Y89_3311 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Y89_3311 PF00364 Biotin-requiring enzyme Y89_3311 PF02785 Biotin carboxylase C-terminal domain Y89_3311 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_3312 PF00682 HMGL-like Y89_3313 PF01614 Bacterial transcriptional regulator Y89_3313 PF09339 IclR helix-turn-helix domain Y89_3314 PF04209 homogentisate 1,2-dioxygenase Y89_3315 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y89_3315 PF09298 Fumarylacetoacetase N-terminal Y89_3316 PF13410 Glutathione S-transferase, C-terminal domain Y89_3316 PF13417 Glutathione S-transferase, N-terminal domain Y89_3317 PF07690 Major Facilitator Superfamily Y89_3318 PF00158 Sigma-54 interaction domain Y89_3318 PF02954 Bacterial regulatory protein, Fis family Y89_3318 PF08448 PAS fold Y89_3320 PF00106 short chain dehydrogenase Y89_3321 PF02667 Y89_3321 Y89_3322 PF00108 Thiolase, N-terminal domain Y89_3322 PF02803 Thiolase, C-terminal domain Y89_3323 PF01144 Coenzyme A transferase Y89_3324 PF01144 Coenzyme A transferase Y89_3325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3325 PF03466 LysR substrate binding domain Y89_3326 PF00501 AMP-binding enzyme Y89_3326 PF16177 Y89_3326 Y89_3327 PF00639 PPIC-type PPIASE domain Y89_3328 PF04237 YjbR Y89_3329 PF06475 Putative glycolipid-binding Y89_3330 PF07690 Major Facilitator Superfamily Y89_3331 PF00072 Response regulator receiver domain Y89_3331 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3331 PF13188 PAS domain Y89_3332 PF00465 Iron-containing alcohol dehydrogenase Y89_3333 PF00326 Prolyl oligopeptidase family Y89_3334 PF04055 Radical SAM superfamily Y89_3334 PF13186 Iron-sulfur cluster-binding domain Y89_3334 PF13353 4Fe-4S single cluster domain Y89_3335 PF05402 Coenzyme PQQ synthesis protein D (PqqD) Y89_3336 PF03070 TENA/THI-4/PQQC family Y89_3337 PF12706 Beta-lactamase superfamily domain Y89_3338 PF08042 Y89_3338 Y89_3339 PF00171 Aldehyde dehydrogenase family Y89_3340 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_3341 PF01011 PQQ enzyme repeat Y89_3341 PF13360 PQQ-like domain Y89_3342 PF00805 Pentapeptide repeats (8 copies) Y89_3343 PF00072 Response regulator receiver domain Y89_3343 PF00196 Bacterial regulatory proteins, luxR family Y89_3346 PF00072 Response regulator receiver domain Y89_3346 PF00196 Bacterial regulatory proteins, luxR family Y89_3347 PF00892 EamA-like transporter family Y89_3348 PF00072 Response regulator receiver domain Y89_3348 PF00512 His Kinase A (phospho-acceptor) domain Y89_3348 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3348 PF08448 PAS fold Y89_3348 PF12860 Y89_3348 Y89_3349 PF08495 Y89_3349 Y89_3349 PF10442 Y89_3349 Y89_3350 PF13609 Gram-negative porin Y89_3351 PF00675 Insulinase (Peptidase family M16) Y89_3351 PF05193 Peptidase M16 inactive domain Y89_3352 PF00884 Sulfatase Y89_3352 PF08019 Y89_3352 Y89_3353 PF05525 Y89_3353 Y89_3355 PF11720 Peptidase inhibitor I78 family Y89_3358 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase Y89_3360 PF00005 ABC transporter Y89_3360 PF12848 ABC transporter Y89_3362 PF02525 Flavodoxin-like fold Y89_3363 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3363 PF03466 LysR substrate binding domain Y89_3364 PF00313 'Cold-shock' DNA-binding domain Y89_3364 PF06961 Y89_3364 Y89_3365 PF02673 Y89_3365 Y89_3366 PF04973 Y89_3366 Y89_3367 PF13521 AAA domain Y89_3371 PF03412 Peptidase C39 family Y89_3373 PF13557 Y89_3373 Y89_3374 PF00294 pfkB family carbohydrate kinase Y89_3375 PF00356 Bacterial regulatory proteins, lacI family Y89_3375 PF13377 Periplasmic binding protein-like domain Y89_3376 PF02653 Y89_3376 Y89_3377 PF00005 ABC transporter Y89_3378 PF13407 Periplasmic binding protein domain Y89_3379 PF00158 Sigma-54 interaction domain Y89_3379 PF02954 Bacterial regulatory protein, Fis family Y89_3380 PF08443 RimK-like ATP-grasp domain Y89_3380 PF14401 Y89_3380 Y89_3381 PF00583 Acetyltransferase (GNAT) family Y89_3381 PF11814 Y89_3381 Y89_3384 PF00199 Catalase Y89_3385 PF01527 Transposase Y89_3386 PF00665 Integrase core domain Y89_3386 PF13276 Y89_3386 Y89_3387 PF14263 Domain of unknown function (DUF4354) Y89_3388 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y89_3388 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y89_3389 PF00941 FAD binding domain in molybdopterin dehydrogenase Y89_3389 PF03450 CO dehydrogenase flavoprotein C-terminal domain Y89_3390 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_3390 PF01799 [2Fe-2S] binding domain Y89_3391 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_3391 PF13426 PAS domain Y89_3393 PF13302 Acetyltransferase (GNAT) domain Y89_3394 PF01717 Cobalamin-independent synthase, Catalytic domain Y89_3394 PF08267 Cobalamin-independent synthase, N-terminal domain Y89_3395 PF02566 OsmC-like protein Y89_3395 PF02624 YcaO-like family Y89_3396 PF09919 Y89_3396 Y89_3398 PF02514 Y89_3398 Y89_3399 PF00593 TonB dependent receptor Y89_3399 PF07715 TonB-dependent Receptor Plug Domain Y89_3400 PF13649 Methyltransferase domain Y89_3401 PF03477 ATP cone domain Y89_3401 PF13597 Anaerobic ribonucleoside-triphosphate reductase Y89_3402 PF13597 Anaerobic ribonucleoside-triphosphate reductase Y89_3403 PF04055 Radical SAM superfamily Y89_3403 PF13353 4Fe-4S single cluster domain Y89_3404 PF01266 FAD dependent oxidoreductase Y89_3405 PF05899 Protein of unknown function (DUF861) Y89_3406 PF03222 Tryptophan/tyrosine permease family Y89_3407 PF07905 Y89_3407 Y89_3407 PF13556 PucR C-terminal helix-turn-helix domain Y89_3409 PF10783 Y89_3409 Y89_3411 PF04542 Sigma-70 region 2 Y89_3411 PF08281 Sigma-70, region 4 Y89_3412 PF04773 FecR protein Y89_3412 PF16220 Y89_3412 Y89_3413 PF00593 TonB dependent receptor Y89_3413 PF07660 Secretin and TonB N terminus short domain Y89_3413 PF07715 TonB-dependent Receptor Plug Domain Y89_3414 PF03929 Y89_3414 Y89_3416 PF07690 Major Facilitator Superfamily Y89_3417 PF03403 Platelet-activating factor acetylhydrolase, isoform II Y89_3419 PF01243 Pyridoxamine 5'-phosphate oxidase Y89_3419 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Y89_3420 PF02567 Phenazine biosynthesis-like protein Y89_3421 PF00117 Glutamine amidotransferase class-I Y89_3421 PF00425 chorismate binding enzyme Y89_3422 PF00857 Isochorismatase family Y89_3423 PF01474 Class-II DAHP synthetase family Y89_3424 PF03284 Phenazine biosynthesis protein A/B Y89_3425 PF03284 Phenazine biosynthesis protein A/B Y89_3426 PF00196 Bacterial regulatory proteins, luxR family Y89_3426 PF03472 Autoinducer binding domain Y89_3427 PF04116 Y89_3427 Y89_3429 PF00487 Y89_3429 Y89_3430 PF13640 2OG-Fe(II) oxygenase superfamily Y89_3431 PF01804 Penicillin amidase Y89_3434 PF00043 Glutathione S-transferase, C-terminal domain Y89_3434 PF13417 Glutathione S-transferase, N-terminal domain Y89_3439 PF00136 DNA polymerase family B Y89_3439 PF03104 DNA polymerase family B, exonuclease domain Y89_3440 PF00583 Acetyltransferase (GNAT) family Y89_3441 PF01381 Helix-turn-helix Y89_3442 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Y89_3443 PF00893 Small Multidrug Resistance protein Y89_3444 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_3444 PF01799 [2Fe-2S] binding domain Y89_3445 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y89_3446 PF13560 Helix-turn-helix domain Y89_3447 PF13023 HD domain Y89_3448 PF13437 HlyD family secretion protein Y89_3448 PF13533 Biotin-lipoyl like Y89_3449 PF00005 ABC transporter Y89_3449 PF00664 ABC transporter transmembrane region Y89_3450 PF02321 Outer membrane efflux protein Y89_3452 PF01544 CorA-like Mg2+ transporter protein Y89_3453 PF12787 Y89_3453 Y89_3454 PF01551 Peptidase family M23 Y89_3456 PF00550 Phosphopantetheine attachment site Y89_3457 PF00263 Y89_3457 Y89_3457 PF03958 Bacterial type II/III secretion system short domain Y89_3458 PF11356 Type IV pilus biogenesis Y89_3460 PF06733 DEAD_2 Y89_3460 PF13307 Helicase C-terminal domain Y89_3461 PF08774 VRR-NUC domain Y89_3462 PF00440 Bacterial regulatory proteins, tetR family Y89_3462 PF08362 YcdC-like protein, C-terminal region Y89_3463 PF13531 Bacterial extracellular solute-binding protein Y89_3464 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3465 PF00005 ABC transporter Y89_3465 PF03459 TOBE domain Y89_3466 PF04072 Leucine carboxyl methyltransferase Y89_3467 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3467 PF03466 LysR substrate binding domain Y89_3468 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase Y89_3470 PF05661 Y89_3470 Y89_3471 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y89_3473 PF00571 CBS domain Y89_3473 PF04982 Y89_3473 Y89_3474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3474 PF03466 LysR substrate binding domain Y89_3476 PF00990 GGDEF domain Y89_3477 PF01965 DJ-1/PfpI family Y89_3477 PF12833 Helix-turn-helix domain Y89_3478 PF06906 Y89_3478 Y89_3479 PF07690 Major Facilitator Superfamily Y89_3480 PF01106 NifU-like domain Y89_3480 PF01521 Iron-sulphur cluster biosynthesis Y89_3481 PF06934 Y89_3481 Y89_3484 PF00809 Pterin binding enzyme Y89_3484 PF02310 B12 binding domain Y89_3484 PF02574 Homocysteine S-methyltransferase Y89_3484 PF02607 B12 binding domain Y89_3484 PF02965 Vitamin B12 dependent methionine synthase, activation domain Y89_3485 PF04320 Y89_3485 Y89_3486 PF04073 Aminoacyl-tRNA editing domain Y89_3487 PF08980 Domain of unknown function (DUF1883) Y89_3488 PF04055 Radical SAM superfamily Y89_3489 PF11174 Y89_3489 Y89_3491 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y89_3491 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y89_3492 PF06073 Y89_3492 Y89_3493 PF00440 Bacterial regulatory proteins, tetR family Y89_3494 PF14539 Domain of unknown function (DUF4442) Y89_3495 PF12146 Putative lysophospholipase Y89_3496 PF00107 Zinc-binding dehydrogenase Y89_3496 PF08240 Alcohol dehydrogenase GroES-like domain Y89_3497 PF01343 Peptidase family S49 Y89_3497 PF08496 Y89_3497 Y89_3498 PF00300 Histidine phosphatase superfamily (branch 1) Y89_3500 PF01636 Phosphotransferase enzyme family Y89_3501 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_3502 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_3503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3503 PF03466 LysR substrate binding domain Y89_3505 PF01925 Y89_3505 Y89_3506 PF00293 NUDIX domain Y89_3506 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Y89_3506 PF09297 NADH pyrophosphatase zinc ribbon domain Y89_3508 PF00378 Enoyl-CoA hydratase/isomerase family Y89_3509 PF06450 Y89_3509 Y89_3510 PF13520 Amino acid permease Y89_3511 PF01276 Orn/Lys/Arg decarboxylase, major domain Y89_3511 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Y89_3511 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Y89_3512 PF12680 SnoaL-like domain Y89_3513 PF00929 Exonuclease Y89_3514 PF00075 RNase H Y89_3515 PF08241 Methyltransferase domain Y89_3516 PF00753 Metallo-beta-lactamase superfamily Y89_3516 PF16123 Y89_3516 Y89_3517 PF01464 Transglycosylase SLT domain Y89_3517 PF01476 LysM domain Y89_3517 PF06474 Y89_3517 Y89_3518 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y89_3519 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y89_3520 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3521 PF00528 Binding-protein-dependent transport system inner membrane component Y89_3521 PF12911 Y89_3521 Y89_3522 PF00005 ABC transporter Y89_3522 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y89_3523 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_3524 PF13616 PPIC-type PPIASE domain Y89_3524 PF13624 SurA N-terminal domain Y89_3525 PF00216 Bacterial DNA-binding protein Y89_3526 PF00004 ATPase family associated with various cellular activities (AAA) Y89_3526 PF02190 ATP-dependent protease La (LON) domain Y89_3526 PF05362 Lon protease (S16) C-terminal proteolytic domain Y89_3527 PF06689 ClpX C4-type zinc finger Y89_3527 PF07724 AAA domain (Cdc48 subfamily) Y89_3527 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_3528 PF00574 Clp protease Y89_3529 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y89_3529 PF05697 Bacterial trigger factor protein (TF) Y89_3529 PF05698 Bacterial trigger factor protein (TF) C-terminus Y89_3530 PF00072 Response regulator receiver domain Y89_3530 PF00486 Transcriptional regulatory protein, C terminal Y89_3531 PF00512 His Kinase A (phospho-acceptor) domain Y89_3531 PF00672 HAMP domain Y89_3531 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3532 PF00144 Beta-lactamase Y89_3536 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Y89_3536 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Y89_3537 PF01406 tRNA synthetases class I (C) catalytic domain Y89_3537 PF09190 DALR domain Y89_3538 PF00749 tRNA synthetases class I (E and Q), catalytic domain Y89_3538 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Y89_3539 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Y89_3540 PF00149 Calcineurin-like phosphoesterase Y89_3541 PF01145 SPFH domain / Band 7 family Y89_3542 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) Y89_3543 PF00582 Universal stress protein family Y89_3544 PF06945 Y89_3544 Y89_3545 PF00330 Aconitase family (aconitate hydratase) Y89_3545 PF06434 Aconitate hydratase 2 N-terminus Y89_3545 PF11791 Aconitate B N-terminal domain Y89_3546 PF13379 NMT1-like family Y89_3547 PF00072 Response regulator receiver domain Y89_3547 PF03861 ANTAR domain Y89_3548 PF08787 Alginate lyase Y89_3549 PF07690 Major Facilitator Superfamily Y89_3550 PF00069 Protein kinase domain Y89_3550 PF13672 Protein phosphatase 2C Y89_3551 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y89_3551 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y89_3551 PF04324 BFD-like [2Fe-2S] binding domain Y89_3551 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_3552 PF13806 Rieske-like [2Fe-2S] domain Y89_3553 PF00384 Molybdopterin oxidoreductase Y89_3553 PF01568 Molydopterin dinucleotide binding domain Y89_3553 PF04324 BFD-like [2Fe-2S] binding domain Y89_3553 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y89_3554 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_3555 PF00691 OmpA family Y89_3555 PF05736 OprF membrane domain Y89_3556 PF04542 Sigma-70 region 2 Y89_3556 PF04545 Sigma-70, region 4 Y89_3557 PF00924 Mechanosensitive ion channel Y89_3557 PF05552 Conserved TM helix Y89_3559 PF01544 CorA-like Mg2+ transporter protein Y89_3560 PF03737 Demethylmenaquinone methyltransferase Y89_3561 PF12697 Alpha/beta hydrolase family Y89_3562 PF00391 PEP-utilising enzyme, mobile domain Y89_3562 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Y89_3562 PF02896 PEP-utilising enzyme, TIM barrel domain Y89_3563 PF03618 Y89_3563 Y89_3564 PF05618 Putative ATP-dependant zinc protease Y89_3565 PF14400 Y89_3565 Y89_3565 PF14402 Y89_3565 Y89_3566 PF14397 Y89_3566 Y89_3567 PF07148 Y89_3567 Y89_3567 PF13511 Y89_3567 Y89_3568 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y89_3570 PF03412 Peptidase C39 family Y89_3572 PF00196 Bacterial regulatory proteins, luxR family Y89_3572 PF13191 AAA ATPase domain Y89_3573 PF00196 Bacterial regulatory proteins, luxR family Y89_3574 PF00425 chorismate binding enzyme Y89_3574 PF04715 Anthranilate synthase component I, N terminal region Y89_3575 PF12710 haloacid dehalogenase-like hydrolase Y89_3578 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3578 PF03466 LysR substrate binding domain Y89_3579 PF00582 Universal stress protein family Y89_3580 PF02558 Ketopantoate reductase PanE/ApbA Y89_3580 PF08546 Ketopantoate reductase PanE/ApbA C terminal Y89_3582 PF00793 DAHP synthetase I family Y89_3583 PF14542 GCN5-related N-acetyl-transferase Y89_3584 PF00378 Enoyl-CoA hydratase/isomerase family Y89_3586 PF01661 Macro domain Y89_3590 PF00117 Glutamine amidotransferase class-I Y89_3591 PF13417 Glutathione S-transferase, N-terminal domain Y89_3593 PF00248 Aldo/keto reductase family Y89_3594 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3594 PF03466 LysR substrate binding domain Y89_3595 PF00378 Enoyl-CoA hydratase/isomerase family Y89_3595 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_3595 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_3596 PF00108 Thiolase, N-terminal domain Y89_3596 PF02803 Thiolase, C-terminal domain Y89_3598 PF03547 Y89_3598 Y89_3599 PF00034 Cytochrome c Y89_3600 PF00227 Proteasome subunit Y89_3601 PF01841 Transglutaminase-like superfamily Y89_3601 PF08379 Y89_3601 Y89_3602 PF04168 Y89_3602 Y89_3603 PF14403 Y89_3603 Y89_3604 PF00117 Glutamine amidotransferase class-I Y89_3605 PF06877 Regulator of ribonuclease activity B Y89_3606 PF00563 EAL domain Y89_3606 PF00990 GGDEF domain Y89_3606 PF03707 Y89_3606 Y89_3607 PF00933 Glycosyl hydrolase family 3 N terminal domain Y89_3607 PF01915 Glycosyl hydrolase family 3 C-terminal domain Y89_3607 PF14310 Fibronectin type III-like domain Y89_3608 PF02108 Y89_3608 Y89_3609 PF06578 Y89_3609 Y89_3610 PF01514 Secretory protein of YscJ/FliF family Y89_3611 PF17001 Y89_3611 Y89_3612 PF09025 YopR Core Y89_3613 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) Y89_3614 PF09392 Type III secretion needle MxiH like Y89_3615 PF08988 Protein of unknown function (DUF1895) Y89_3616 PF16693 Y89_3616 Y89_3616 PF16697 Y89_3616 Y89_3617 PF00263 Y89_3617 Y89_3617 PF03958 Bacterial type II/III secretion system short domain Y89_3618 PF05932 Tir chaperone protein (CesT) family Y89_3619 PF16806 Y89_3619 Y89_3620 PF12833 Helix-turn-helix domain Y89_3621 PF09619 Type III secretion system lipoprotein chaperone (YscW) Y89_3623 PF05932 Tir chaperone protein (CesT) family Y89_3624 PF05844 YopD protein Y89_3625 PF04888 Y89_3625 Y89_3627 PF04792 V antigen (LcrV) protein Y89_3628 PF07216 Y89_3628 Y89_3629 PF09621 Y89_3629 Y89_3630 PF00771 FHIPEP family Y89_3632 PF09474 Y89_3632 Y89_3634 PF09059 TyeA Y89_3635 PF07201 HrpJ-like domain Y89_3636 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y89_3636 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y89_3637 PF07321 Type III secretion protein YscO Y89_3638 PF02120 Flagellar hook-length control protein FliK Y89_3639 PF01052 Surface presentation of antigens (SPOA) Y89_3640 PF00813 Y89_3640 Y89_3641 PF01313 Y89_3641 Y89_3642 PF01311 Y89_3642 Y89_3643 PF01312 FlhB HrpN YscU SpaS Family Y89_3644 PF00884 Sulfatase Y89_3646 PF01564 Spermine/spermidine synthase Y89_3646 PF17284 Y89_3646 Y89_3647 PF00730 HhH-GPD superfamily base excision DNA repair protein Y89_3647 PF06029 AlkA N-terminal domain Y89_3648 PF13396 Y89_3648 Y89_3650 PF03079 ARD/ARD' family Y89_3651 PF00596 Class II Aldolase and Adducin N-terminal domain Y89_3652 PF12832 MFS_1 like family Y89_3653 PF01264 Chorismate synthase Y89_3654 PF12146 Putative lysophospholipase Y89_3656 PF05175 Methyltransferase small domain Y89_3657 PF00857 Isochorismatase family Y89_3659 PF01713 Smr domain Y89_3660 PF01227 GTP cyclohydrolase I Y89_3661 PF01814 Hemerythrin HHE cation binding domain Y89_3662 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_3663 PF00069 Protein kinase domain Y89_3664 PF13672 Protein phosphatase 2C Y89_3665 PF06744 Y89_3665 Y89_3665 PF06761 Y89_3665 Y89_3665 PF14331 Y89_3665 Y89_3666 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) Y89_3667 PF05936 Y89_3667 Y89_3668 PF12790 Type VI secretion lipoprotein Y89_3669 PF00498 FHA domain Y89_3671 PF00158 Sigma-54 interaction domain Y89_3671 PF02954 Bacterial regulatory protein, Fis family Y89_3672 PF00004 ATPase family associated with various cellular activities (AAA) Y89_3672 PF02861 Clp amino terminal domain Y89_3672 PF07724 AAA domain (Cdc48 subfamily) Y89_3672 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_3673 PF06996 Y89_3673 Y89_3674 PF05947 Y89_3674 Y89_3675 PF04965 Gene 25-like lysozyme Y89_3676 PF05943 Y89_3676 Y89_3677 PF05591 Y89_3677 Y89_3678 PF06812 Y89_3678 Y89_3678 PF16989 Y89_3678 Y89_3679 PF00043 Glutathione S-transferase, C-terminal domain Y89_3679 PF02798 Glutathione S-transferase, N-terminal domain Y89_3680 PF00155 Aminotransferase class I and II Y89_3681 PF12802 MarR family Y89_3683 PF03594 Y89_3683 Y89_3684 PF01758 Sodium Bile acid symporter family Y89_3685 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_3686 PF00107 Zinc-binding dehydrogenase Y89_3686 PF16884 Y89_3686 Y89_3687 PF00916 Y89_3687 Y89_3687 PF01740 STAS domain Y89_3688 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_3688 PF00672 HAMP domain Y89_3689 PF16985 Y89_3689 Y89_3690 PF01613 Flavin reductase like domain Y89_3691 PF04828 Glutathione-dependent formaldehyde-activating enzyme Y89_3693 PF00586 AIR synthase related protein, N-terminal domain Y89_3693 PF02769 AIR synthase related protein, C-terminal domain Y89_3696 PF16233 Y89_3696 Y89_3697 PF04960 Glutaminase Y89_3698 PF00072 Response regulator receiver domain Y89_3698 PF00486 Transcriptional regulatory protein, C terminal Y89_3699 PF00512 His Kinase A (phospho-acceptor) domain Y89_3699 PF00582 Universal stress protein family Y89_3699 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3699 PF02702 Osmosensitive K+ channel His kinase sensor domain Y89_3699 PF13493 Domain of unknown function (DUF4118) Y89_3700 PF02669 Y89_3700 Y89_3701 PF00122 E1-E2 ATPase Y89_3701 PF00702 haloacid dehalogenase-like hydrolase Y89_3702 PF03814 Y89_3702 Y89_3703 PF09604 Y89_3703 Y89_3704 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_3704 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_3704 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_3705 PF01614 Bacterial transcriptional regulator Y89_3705 PF09339 IclR helix-turn-helix domain Y89_3706 PF00378 Enoyl-CoA hydratase/isomerase family Y89_3707 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_3707 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_3708 PF00392 Bacterial regulatory proteins, gntR family Y89_3708 PF07729 FCD domain Y89_3709 PF07690 Major Facilitator Superfamily Y89_3710 PF01594 Y89_3710 Y89_3711 PF16234 Y89_3711 Y89_3712 PF00043 Glutathione S-transferase, C-terminal domain Y89_3712 PF02798 Glutathione S-transferase, N-terminal domain Y89_3713 PF00561 alpha/beta hydrolase fold Y89_3714 PF12697 Alpha/beta hydrolase family Y89_3715 PF01810 Y89_3715 Y89_3716 PF02311 AraC-like ligand binding domain Y89_3716 PF12833 Helix-turn-helix domain Y89_3718 PF00501 AMP-binding enzyme Y89_3719 PF00300 Histidine phosphatase superfamily (branch 1) Y89_3720 PF14333 Y89_3720 Y89_3721 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Y89_3721 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Y89_3722 PF00593 TonB dependent receptor Y89_3722 PF07715 TonB-dependent Receptor Plug Domain Y89_3724 PF00072 Response regulator receiver domain Y89_3724 PF00512 His Kinase A (phospho-acceptor) domain Y89_3724 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3724 PF09984 Y89_3724 Y89_3725 PF07977 FabA-like domain Y89_3726 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_3726 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_3727 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_3727 PF12729 Y89_3727 Y89_3728 PF01638 HxlR-like helix-turn-helix Y89_3729 PF12975 Domain of unknown function (DUF3859) Y89_3730 PF04909 Amidohydrolase Y89_3731 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_3732 PF01047 MarR family Y89_3733 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_3733 PF01799 [2Fe-2S] binding domain Y89_3734 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y89_3735 PF00034 Cytochrome c Y89_3735 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_3736 PF02311 AraC-like ligand binding domain Y89_3736 PF12833 Helix-turn-helix domain Y89_3737 PF02548 Ketopantoate hydroxymethyltransferase Y89_3738 PF01738 Dienelactone hydrolase family Y89_3739 PF00183 Hsp90 protein Y89_3739 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3741 PF03061 Thioesterase superfamily Y89_3742 PF03061 Thioesterase superfamily Y89_3744 PF04654 Y89_3744 Y89_3745 PF05525 Y89_3745 Y89_3746 PF00549 CoA-ligase Y89_3746 PF02629 CoA binding domain Y89_3747 PF00549 CoA-ligase Y89_3747 PF08442 ATP-grasp domain Y89_3748 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y89_3748 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_3749 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Y89_3749 PF00364 Biotin-requiring enzyme Y89_3749 PF02817 e3 binding domain Y89_3750 PF00676 Dehydrogenase E1 component Y89_3750 PF02779 Transketolase, pyrimidine binding domain Y89_3750 PF16078 Y89_3750 Y89_3750 PF16870 Y89_3750 Y89_3751 PF13085 2Fe-2S iron-sulfur cluster binding domain Y89_3751 PF13534 4Fe-4S dicluster domain Y89_3752 PF00890 FAD binding domain Y89_3752 PF02910 Fumarate reductase flavoprotein C-term Y89_3753 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Y89_3754 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Y89_3755 PF00285 Citrate synthase Y89_3756 PF01852 START domain Y89_3757 PF03692 Y89_3757 Y89_3759 PF04342 Y89_3759 Y89_3760 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y89_3760 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y89_3761 PF00929 Exonuclease Y89_3762 PF06865 Protein of unknown function (DUF1255) Y89_3763 PF06940 Y89_3763 Y89_3764 PF01513 ATP-NAD kinase Y89_3766 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3766 PF03466 LysR substrate binding domain Y89_3767 PF07690 Major Facilitator Superfamily Y89_3768 PF01042 Endoribonuclease L-PSP Y89_3769 PF01266 FAD dependent oxidoreductase Y89_3770 PF00120 Glutamine synthetase, catalytic domain Y89_3771 PF01266 FAD dependent oxidoreductase Y89_3772 PF01206 Sulfurtransferase TusA Y89_3773 PF01728 FtsJ-like methyltransferase Y89_3774 PF00330 Aconitase family (aconitate hydratase) Y89_3774 PF00694 Aconitase C-terminal domain Y89_3776 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_3776 PF08447 PAS fold Y89_3777 PF07993 Male sterility protein Y89_3779 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y89_3780 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO Y89_3781 PF05545 Y89_3781 Y89_3782 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_3782 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Y89_3783 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y89_3784 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO Y89_3785 PF05545 Y89_3785 Y89_3786 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_3786 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Y89_3787 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Y89_3787 PF12801 Y89_3787 Y89_3787 PF13746 4Fe-4S dicluster domain Y89_3788 PF05751 Y89_3788 Y89_3789 PF00122 E1-E2 ATPase Y89_3789 PF00403 Heavy-metal-associated domain Y89_3789 PF00702 haloacid dehalogenase-like hydrolase Y89_3789 PF12156 Y89_3789 Y89_3790 PF03597 Y89_3790 Y89_3791 PF13386 Y89_3791 Y89_3792 PF04055 Radical SAM superfamily Y89_3792 PF06969 HemN C-terminal domain Y89_3794 PF00027 Cyclic nucleotide-binding domain Y89_3794 PF00325 Bacterial regulatory proteins, crp family Y89_3795 PF00156 Phosphoribosyl transferase domain Y89_3796 PF10118 Y89_3796 Y89_3797 PF00893 Small Multidrug Resistance protein Y89_3798 PF00893 Small Multidrug Resistance protein Y89_3799 PF00440 Bacterial regulatory proteins, tetR family Y89_3800 PF00743 Flavin-binding monooxygenase-like Y89_3801 PF00106 short chain dehydrogenase Y89_3802 PF03691 Y89_3802 Y89_3803 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_3803 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_3803 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_3804 PF02132 RecR protein Y89_3804 PF13662 Toprim domain Y89_3805 PF02575 YbaB/EbfC DNA-binding family Y89_3806 PF12169 DNA polymerase III subunits gamma and tau domain III Y89_3806 PF12170 DNA polymerase III tau subunit V interacting with alpha Y89_3806 PF13177 DNA polymerase III, delta subunit Y89_3807 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_3809 PF00533 BRCA1 C Terminus (BRCT) domain Y89_3809 PF01653 NAD-dependent DNA ligase adenylation domain Y89_3809 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Y89_3809 PF03120 NAD-dependent DNA ligase OB-fold domain Y89_3809 PF12826 Helix-hairpin-helix motif Y89_3810 PF04354 ZipA, C-terminal FtsZ-binding domain Y89_3811 PF02463 RecF/RecN/SMC N terminal domain Y89_3812 PF00392 Bacterial regulatory proteins, gntR family Y89_3812 PF07729 FCD domain Y89_3813 PF00487 Y89_3813 Y89_3814 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_3814 PF00941 FAD binding domain in molybdopterin dehydrogenase Y89_3814 PF01799 [2Fe-2S] binding domain Y89_3814 PF03450 CO dehydrogenase flavoprotein C-terminal domain Y89_3815 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y89_3815 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y89_3816 PF02625 XdhC and CoxI family Y89_3816 PF13478 XdhC Rossmann domain Y89_3817 PF01979 Amidohydrolase family Y89_3818 PF00392 Bacterial regulatory proteins, gntR family Y89_3818 PF07729 FCD domain Y89_3819 PF00860 Permease family Y89_3820 PF00576 HIUase/Transthyretin family Y89_3821 PF01522 Polysaccharide deacetylase Y89_3822 PF09349 OHCU decarboxylase Y89_3823 PF03561 Allantoicase repeat Y89_3824 PF04115 Ureidoglycolate hydrolase Y89_3825 PF06181 Y89_3825 Y89_3826 PF05638 Protein of unknown function (DUF796) Y89_3827 PF05954 Phage late control gene D protein (GPD) Y89_3827 PF10106 Y89_3827 Y89_3827 PF13296 Y89_3827 Y89_3830 PF05488 PAAR motif Y89_3831 PF00860 Permease family Y89_3833 PF04055 Radical SAM superfamily Y89_3833 PF06463 Molybdenum Cofactor Synthesis C Y89_3833 PF13353 4Fe-4S single cluster domain Y89_3834 PF00440 Bacterial regulatory proteins, tetR family Y89_3834 PF08362 YcdC-like protein, C-terminal region Y89_3835 PF03928 Domain of unknown function (DUF336) Y89_3836 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_3836 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_3836 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_3837 PF01261 Xylose isomerase-like TIM barrel Y89_3838 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y89_3838 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y89_3839 PF05161 MOFRL family Y89_3839 PF13660 Domain of unknown function (DUF4147) Y89_3840 PF00224 Pyruvate kinase, barrel domain Y89_3840 PF02887 Pyruvate kinase, alpha/beta domain Y89_3841 PF03253 Urea transporter Y89_3842 PF00520 Ion transport protein Y89_3844 PF13598 Y89_3844 Y89_3844 PF13600 Y89_3844 Y89_3845 PF13531 Bacterial extracellular solute-binding protein Y89_3846 PF09152 Domain of unknown function (DUF1937) Y89_3847 PF04346 Y89_3847 Y89_3848 PF00455 Y89_3848 Y89_3848 PF08220 DeoR-like helix-turn-helix domain Y89_3849 PF01266 FAD dependent oxidoreductase Y89_3849 PF04324 BFD-like [2Fe-2S] binding domain Y89_3850 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_3851 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y89_3851 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y89_3852 PF03576 Peptidase family S58 Y89_3853 PF13520 Amino acid permease Y89_3854 PF00196 Bacterial regulatory proteins, luxR family Y89_3857 PF03918 Cytochrome C biogenesis protein Y89_3858 PF08534 Redoxin Y89_3859 PF01578 Y89_3859 Y89_3859 PF16327 Y89_3859 Y89_3860 PF03100 CcmE Y89_3861 PF04995 Y89_3861 Y89_3862 PF01578 Y89_3862 Y89_3863 PF03379 Y89_3863 Y89_3864 PF00005 ABC transporter Y89_3865 PF02120 Flagellar hook-length control protein FliK Y89_3866 PF01312 FlhB HrpN YscU SpaS Family Y89_3867 PF13302 Acetyltransferase (GNAT) domain Y89_3869 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_3870 PF02578 Multi-copper polyphenol oxidoreductase laccase Y89_3872 PF08279 HTH domain Y89_3872 PF13280 Y89_3872 Y89_3873 PF00043 Glutathione S-transferase, C-terminal domain Y89_3873 PF13417 Glutathione S-transferase, N-terminal domain Y89_3874 PF10975 Y89_3874 Y89_3875 PF01584 CheW-like domain Y89_3876 PF01584 CheW-like domain Y89_3877 PF13614 AAA domain Y89_3878 PF00691 OmpA family Y89_3878 PF13677 Y89_3878 Y89_3879 PF01618 Y89_3879 Y89_3880 PF00072 Response regulator receiver domain Y89_3880 PF01339 CheB methylesterase Y89_3881 PF01584 CheW-like domain Y89_3881 PF01627 Hpt domain Y89_3881 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3881 PF02895 Signal transducing histidine kinase, homodimeric domain Y89_3882 PF04344 Chemotaxis phosphatase, CheZ Y89_3883 PF00072 Response regulator receiver domain Y89_3884 PF04539 Sigma-70 region 3 Y89_3884 PF04542 Sigma-70 region 2 Y89_3884 PF04545 Sigma-70, region 4 Y89_3885 PF10609 ParA/MinD ATPase like Y89_3886 PF00448 SRP54-type protein, GTPase domain Y89_3887 PF00771 FHIPEP family Y89_3888 PF04536 TLP18 Y89_3889 PF04536 TLP18 Y89_3890 PF01312 FlhB HrpN YscU SpaS Family Y89_3891 PF01311 Y89_3891 Y89_3892 PF01313 Y89_3892 Y89_3893 PF00813 Y89_3893 Y89_3894 PF04347 Y89_3894 Y89_3895 PF01052 Surface presentation of antigens (SPOA) Y89_3896 PF01052 Surface presentation of antigens (SPOA) Y89_3896 PF02154 Flagellar motor switch protein FliM Y89_3897 PF03748 Y89_3897 Y89_3898 PF02120 Flagellar hook-length control protein FliK Y89_3899 PF03695 Uncharacterised protein family (UPF0149) Y89_3900 PF04304 Y89_3900 Y89_3901 PF00512 His Kinase A (phospho-acceptor) domain Y89_3901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3902 PF00072 Response regulator receiver domain Y89_3902 PF00486 Transcriptional regulatory protein, C terminal Y89_3903 PF00873 AcrB/AcrD/AcrF family Y89_3904 PF16576 Y89_3904 Y89_3905 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP Y89_3906 PF00563 EAL domain Y89_3906 PF00672 HAMP domain Y89_3906 PF00990 GGDEF domain Y89_3906 PF16448 Y89_3906 Y89_3907 PF00765 Autoinducer synthetase Y89_3909 PF00196 Bacterial regulatory proteins, luxR family Y89_3909 PF03472 Autoinducer binding domain Y89_3910 PF00122 E1-E2 ATPase Y89_3910 PF00689 Cation transporting ATPase, C-terminus Y89_3910 PF00690 Cation transporter/ATPase, N-terminus Y89_3910 PF00702 haloacid dehalogenase-like hydrolase Y89_3911 PF13673 Acetyltransferase (GNAT) domain Y89_3912 PF13372 Alginate export Y89_3913 PF00884 Sulfatase Y89_3914 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) Y89_3914 PF13429 Tetratricopeptide repeat Y89_3914 PF13435 Cytochrome c554 and c-prime Y89_3915 PF00355 Rieske [2Fe-2S] domain Y89_3916 PF03795 YCII-related domain Y89_3917 PF00775 Dioxygenase Y89_3917 PF04444 Catechol dioxygenase N terminus Y89_3918 PF00465 Iron-containing alcohol dehydrogenase Y89_3919 PF00171 Aldehyde dehydrogenase family Y89_3922 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3922 PF03466 LysR substrate binding domain Y89_3923 PF00005 ABC transporter Y89_3925 PF03942 Y89_3925 Y89_3926 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_3926 PF08447 PAS fold Y89_3926 PF13426 PAS domain Y89_3927 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3927 PF03466 LysR substrate binding domain Y89_3928 PF00491 Arginase family Y89_3929 PF13474 SnoaL-like domain Y89_3930 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y89_3931 PF00474 Sodium:solute symporter family Y89_3932 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_3932 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_3932 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_3933 PF01565 FAD binding domain Y89_3933 PF02913 FAD linked oxidases, C-terminal domain Y89_3934 PF00753 Metallo-beta-lactamase superfamily Y89_3936 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3936 PF03466 LysR substrate binding domain Y89_3937 PF06779 Y89_3937 Y89_3938 PF00892 EamA-like transporter family Y89_3939 PF13416 Bacterial extracellular solute-binding protein Y89_3940 PF00850 Histone deacetylase domain Y89_3941 PF00924 Mechanosensitive ion channel Y89_3941 PF12607 Y89_3941 Y89_3942 PF10672 S-adenosylmethionine-dependent methyltransferase Y89_3943 PF01909 Nucleotidyltransferase domain Y89_3944 PF00580 UvrD/REP helicase N-terminal domain Y89_3946 PF00440 Bacterial regulatory proteins, tetR family Y89_3947 PF13578 Methyltransferase domain Y89_3948 PF07366 SnoaL-like polyketide cyclase Y89_3949 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Y89_3949 PF00364 Biotin-requiring enzyme Y89_3949 PF01039 Carboxyl transferase domain Y89_3949 PF02785 Biotin carboxylase C-terminal domain Y89_3949 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_3950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_3950 PF03466 LysR substrate binding domain Y89_3952 PF00072 Response regulator receiver domain Y89_3952 PF00196 Bacterial regulatory proteins, luxR family Y89_3953 PF00072 Response regulator receiver domain Y89_3953 PF00512 His Kinase A (phospho-acceptor) domain Y89_3953 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_3956 PF01583 Adenylylsulphate kinase Y89_3958 PF00534 Glycosyl transferases group 1 Y89_3959 PF00535 Glycosyl transferase family 2 Y89_3960 PF13692 Glycosyl transferases group 1 Y89_3961 PF00535 Glycosyl transferase family 2 Y89_3962 PF13469 Sulfotransferase family Y89_3963 PF14524 Wzt C-terminal domain Y89_3964 PF00534 Glycosyl transferases group 1 Y89_3965 PF16363 Y89_3965 Y89_3967 PF00263 Y89_3967 Y89_3967 PF03958 Bacterial type II/III secretion system short domain Y89_3969 PF06719 Y89_3969 Y89_3969 PF12833 Helix-turn-helix domain Y89_3970 PF00106 short chain dehydrogenase Y89_3972 PF00583 Acetyltransferase (GNAT) family Y89_3973 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Y89_3974 PF01527 Transposase Y89_3975 PF03747 ADP-ribosylglycohydrolase Y89_3976 PF14487 Y89_3976 Y89_3977 PF13361 UvrD-like helicase C-terminal domain Y89_3979 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_3979 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_3979 PF11890 Domain of unknown function (DUF3410) Y89_3980 PF01638 HxlR-like helix-turn-helix Y89_3981 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_3981 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_3983 PF02567 Phenazine biosynthesis-like protein Y89_3984 PF00593 TonB dependent receptor Y89_3984 PF07715 TonB-dependent Receptor Plug Domain Y89_3985 PF04773 FecR protein Y89_3985 PF16344 Y89_3985 Y89_3986 PF08281 Sigma-70, region 4 Y89_3988 PF01554 MatE Y89_3989 PF00892 EamA-like transporter family Y89_3990 PF01381 Helix-turn-helix Y89_3990 PF07883 Cupin domain Y89_3991 PF06983 3-demethylubiquinone-9 3-methyltransferase Y89_3992 PF04073 Aminoacyl-tRNA editing domain Y89_3994 PF02597 ThiS family Y89_3995 PF03795 YCII-related domain Y89_3996 PF06983 3-demethylubiquinone-9 3-methyltransferase Y89_3997 PF07690 Major Facilitator Superfamily Y89_3998 PF04542 Sigma-70 region 2 Y89_3998 PF08281 Sigma-70, region 4 Y89_3999 PF05988 Y89_3999 Y89_4001 PF03795 YCII-related domain Y89_4003 PF00196 Bacterial regulatory proteins, luxR family Y89_4003 PF08448 PAS fold Y89_4004 PF01276 Orn/Lys/Arg decarboxylase, major domain Y89_4004 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Y89_4004 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Y89_4005 PF08443 RimK-like ATP-grasp domain Y89_4005 PF14401 Y89_4005 Y89_4006 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_4008 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_4009 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4010 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4011 PF00005 ABC transporter Y89_4012 PF01019 Gamma-glutamyltranspeptidase Y89_4013 PF00710 Asparaginase Y89_4014 PF00512 His Kinase A (phospho-acceptor) domain Y89_4014 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4014 PF02743 Cache domain Y89_4015 PF00072 Response regulator receiver domain Y89_4015 PF00158 Sigma-54 interaction domain Y89_4015 PF02954 Bacterial regulatory protein, Fis family Y89_4016 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_4018 PF13489 Methyltransferase domain Y89_4019 PF00571 CBS domain Y89_4019 PF03471 Transporter associated domain Y89_4019 PF03741 Y89_4019 Y89_4020 PF00106 short chain dehydrogenase Y89_4021 PF03928 Domain of unknown function (DUF336) Y89_4022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4022 PF03466 LysR substrate binding domain Y89_4023 PF01223 DNA/RNA non-specific endonuclease Y89_4023 PF13365 Trypsin-like peptidase domain Y89_4024 PF00291 Pyridoxal-phosphate dependent enzyme Y89_4024 PF00585 C-terminal regulatory domain of Threonine dehydratase Y89_4025 PF13474 SnoaL-like domain Y89_4027 PF05957 Y89_4027 Y89_4028 PF00593 TonB dependent receptor Y89_4028 PF07715 TonB-dependent Receptor Plug Domain Y89_4029 PF01040 UbiA prenyltransferase family Y89_4030 PF03626 Y89_4030 Y89_4031 PF00510 Cytochrome c oxidase subunit III Y89_4032 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y89_4033 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Y89_4033 PF06481 COX Aromatic Rich Motif Y89_4034 PF07690 Major Facilitator Superfamily Y89_4035 PF00440 Bacterial regulatory proteins, tetR family Y89_4036 PF14534 Domain of unknown function (DUF4440) Y89_4037 PF07690 Major Facilitator Superfamily Y89_4038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4038 PF03466 LysR substrate binding domain Y89_4039 PF00702 haloacid dehalogenase-like hydrolase Y89_4040 PF00266 Aminotransferase class-V Y89_4041 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4041 PF03466 LysR substrate binding domain Y89_4042 PF11157 Y89_4042 Y89_4043 PF13230 Glutamine amidotransferases class-II Y89_4044 PF01230 HIT domain Y89_4046 PF00326 Prolyl oligopeptidase family Y89_4046 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Y89_4047 PF00717 Peptidase S24-like Y89_4048 PF00593 TonB dependent receptor Y89_4048 PF07660 Secretin and TonB N terminus short domain Y89_4048 PF07715 TonB-dependent Receptor Plug Domain Y89_4049 PF04773 FecR protein Y89_4049 PF16220 Y89_4049 Y89_4049 PF16344 Y89_4049 Y89_4050 PF04542 Sigma-70 region 2 Y89_4050 PF08281 Sigma-70, region 4 Y89_4051 PF03692 Y89_4051 Y89_4052 PF02583 Metal-sensitive transcriptional repressor Y89_4053 PF01545 Cation efflux family Y89_4054 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_4055 PF05166 YcgL domain Y89_4056 PF00570 HRDC domain Y89_4056 PF01612 3'-5' exonuclease Y89_4057 PF03088 Strictosidine synthase Y89_4058 PF00581 Rhodanese-like domain Y89_4059 PF12697 Alpha/beta hydrolase family Y89_4060 PF00440 Bacterial regulatory proteins, tetR family Y89_4062 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y89_4063 PF00255 Glutathione peroxidase Y89_4064 PF07690 Major Facilitator Superfamily Y89_4065 PF12802 MarR family Y89_4066 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4066 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_4066 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4066 PF12418 Y89_4066 Y89_4066 PF12806 Y89_4066 Y89_4067 PF00440 Bacterial regulatory proteins, tetR family Y89_4068 PF07690 Major Facilitator Superfamily Y89_4069 PF02654 Y89_4069 Y89_4070 PF00300 Histidine phosphatase superfamily (branch 1) Y89_4071 PF02277 Phosphoribosyltransferase Y89_4072 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Y89_4073 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y89_4073 PF07685 CobB/CobQ-like glutamine amidotransferase domain Y89_4074 PF00155 Aminotransferase class I and II Y89_4075 PF03186 Y89_4075 Y89_4076 PF00881 Nitroreductase family Y89_4077 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y89_4077 PF07685 CobB/CobQ-like glutamine amidotransferase domain Y89_4078 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Y89_4078 PF12557 Cob(I)alamin adenosyltransferase N terminal Y89_4079 PF00593 TonB dependent receptor Y89_4079 PF07715 TonB-dependent Receptor Plug Domain Y89_4080 PF04632 Y89_4080 Y89_4081 PF00392 Bacterial regulatory proteins, gntR family Y89_4081 PF07729 FCD domain Y89_4082 PF05544 Proline racemase Y89_4083 PF01266 FAD dependent oxidoreductase Y89_4084 PF13510 2Fe-2S iron-sulfur cluster binding domain Y89_4085 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_4086 PF00892 EamA-like transporter family Y89_4087 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4087 PF03466 LysR substrate binding domain Y89_4088 PF13560 Helix-turn-helix domain Y89_4089 PF07690 Major Facilitator Superfamily Y89_4090 PF08448 PAS fold Y89_4090 PF12833 Helix-turn-helix domain Y89_4091 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_4092 PF01989 Protein of unknown function DUF126 Y89_4092 PF04412 Y89_4092 Y89_4093 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4094 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4095 PF00005 ABC transporter Y89_4096 PF05544 Proline racemase Y89_4097 PF00701 Dihydrodipicolinate synthetase family Y89_4098 PF00171 Aldehyde dehydrogenase family Y89_4099 PF02615 Malate/L-lactate dehydrogenase Y89_4100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_4100 PF12729 Y89_4100 Y89_4101 PF02974 Protease inhibitor Inh Y89_4102 PF08548 Peptidase M10 serralysin C terminal Y89_4102 PF13583 Metallo-peptidase family M12B Reprolysin-like Y89_4103 PF02321 Outer membrane efflux protein Y89_4104 PF00529 HlyD family secretion protein Y89_4105 PF00005 ABC transporter Y89_4105 PF00664 ABC transporter transmembrane region Y89_4108 PF00072 Response regulator receiver domain Y89_4108 PF00512 His Kinase A (phospho-acceptor) domain Y89_4108 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4108 PF08448 PAS fold Y89_4109 PF00082 Subtilase family Y89_4110 PF00440 Bacterial regulatory proteins, tetR family Y89_4111 PF00378 Enoyl-CoA hydratase/isomerase family Y89_4112 PF12146 Putative lysophospholipase Y89_4115 PF02321 Outer membrane efflux protein Y89_4116 PF13437 HlyD family secretion protein Y89_4116 PF13533 Biotin-lipoyl like Y89_4117 PF07690 Major Facilitator Superfamily Y89_4118 PF02311 AraC-like ligand binding domain Y89_4118 PF12833 Helix-turn-helix domain Y89_4119 PF14595 Thioredoxin Y89_4120 PF10976 Protein of unknown function (DUF2790) Y89_4121 PF04632 Y89_4121 Y89_4122 PF16576 Y89_4122 Y89_4123 PF07869 Y89_4123 Y89_4124 PF12833 Helix-turn-helix domain Y89_4126 PF01636 Phosphotransferase enzyme family Y89_4127 PF00440 Bacterial regulatory proteins, tetR family Y89_4128 PF02525 Flavodoxin-like fold Y89_4129 PF02525 Flavodoxin-like fold Y89_4130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4130 PF03466 LysR substrate binding domain Y89_4131 PF03562 MltA specific insert domain Y89_4131 PF06725 3D domain Y89_4132 PF00501 AMP-binding enzyme Y89_4132 PF00550 Phosphopantetheine attachment site Y89_4134 PF12697 Alpha/beta hydrolase family Y89_4135 PF05721 Phytanoyl-CoA dioxygenase (PhyH) Y89_4136 PF00682 HMGL-like Y89_4137 PF13649 Methyltransferase domain Y89_4138 PF00501 AMP-binding enzyme Y89_4139 PF00733 Asparagine synthase Y89_4139 PF13537 Glutamine amidotransferase domain Y89_4140 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y89_4141 PF07690 Major Facilitator Superfamily Y89_4142 PF12697 Alpha/beta hydrolase family Y89_4143 PF02678 Pirin Y89_4144 PF00581 Rhodanese-like domain Y89_4144 PF09335 Y89_4144 Y89_4145 PF00743 Flavin-binding monooxygenase-like Y89_4145 PF13450 NAD(P)-binding Rossmann-like domain Y89_4146 PF00999 Sodium/hydrogen exchanger family Y89_4146 PF02254 TrkA-N domain Y89_4147 PF08982 Domain of unknown function (DUF1857) Y89_4148 PF02678 Pirin Y89_4148 PF05726 Pirin C-terminal cupin domain Y89_4149 PF03358 NADPH-dependent FMN reductase Y89_4150 PF02566 OsmC-like protein Y89_4151 PF00857 Isochorismatase family Y89_4152 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4152 PF03466 LysR substrate binding domain Y89_4153 PF01596 O-methyltransferase Y89_4154 PF00877 NlpC/P60 family Y89_4155 PF00877 NlpC/P60 family Y89_4156 PF02146 Sir2 family Y89_4157 PF00158 Sigma-54 interaction domain Y89_4157 PF02954 Bacterial regulatory protein, Fis family Y89_4157 PF08448 PAS fold Y89_4158 PF02274 Amidinotransferase Y89_4159 PF13520 Amino acid permease Y89_4160 PF03352 Methyladenine glycosylase Y89_4161 PF01171 PP-loop family Y89_4162 PF12339 Y89_4162 Y89_4163 PF06930 Y89_4163 Y89_4164 PF10263 Y89_4164 Y89_4164 PF17283 Y89_4164 Y89_4165 PF02515 CoA-transferase family III Y89_4166 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4166 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_4166 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4167 PF00296 Luciferase-like monooxygenase Y89_4168 PF00043 Glutathione S-transferase, C-terminal domain Y89_4168 PF02798 Glutathione S-transferase, N-terminal domain Y89_4169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4169 PF03466 LysR substrate binding domain Y89_4170 PF00375 Sodium:dicarboxylate symporter family Y89_4171 PF12625 Y89_4171 Y89_4171 PF12833 Helix-turn-helix domain Y89_4172 PF00563 EAL domain Y89_4172 PF00990 GGDEF domain Y89_4172 PF05231 Y89_4172 Y89_4172 PF08447 PAS fold Y89_4172 PF08448 PAS fold Y89_4172 PF13426 PAS domain Y89_4173 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4174 PF00072 Response regulator receiver domain Y89_4174 PF00486 Transcriptional regulatory protein, C terminal Y89_4175 PF13505 Outer membrane protein beta-barrel domain Y89_4176 PF06796 Y89_4176 Y89_4177 PF12838 4Fe-4S dicluster domain Y89_4178 PF03927 NapD protein Y89_4179 PF00384 Molybdopterin oxidoreductase Y89_4179 PF01568 Molydopterin dinucleotide binding domain Y89_4179 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y89_4180 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) Y89_4181 PF03264 NapC/NirT cytochrome c family, N-terminal region Y89_4182 PF01471 Putative peptidoglycan binding domain Y89_4182 PF13406 Transglycosylase SLT domain Y89_4183 PF03741 Y89_4183 Y89_4184 PF00305 Lipoxygenase Y89_4186 PF08787 Alginate lyase Y89_4187 PF01738 Dienelactone hydrolase family Y89_4188 PF01648 4'-phosphopantetheinyl transferase superfamily Y89_4189 PF00899 ThiF family Y89_4190 PF13641 Glycosyltransferase like family 2 Y89_4191 PF01546 Peptidase family M20/M25/M40 Y89_4191 PF07687 Peptidase dimerisation domain Y89_4192 PF13649 Methyltransferase domain Y89_4194 PF00313 'Cold-shock' DNA-binding domain Y89_4195 PF00512 His Kinase A (phospho-acceptor) domain Y89_4195 PF00672 HAMP domain Y89_4195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4196 PF00072 Response regulator receiver domain Y89_4196 PF00486 Transcriptional regulatory protein, C terminal Y89_4197 PF00317 Ribonucleotide reductase, all-alpha domain Y89_4197 PF02867 Ribonucleotide reductase, barrel domain Y89_4197 PF03477 ATP cone domain Y89_4198 PF00268 Ribonucleotide reductase, small chain Y89_4199 PF01797 Transposase IS200 like Y89_4201 PF01320 Colicin immunity protein / pyocin immunity protein Y89_4202 PF06958 S-type Pyocin Y89_4203 PF09961 Y89_4203 Y89_4204 PF09009 Exotoxin A catalytic Y89_4204 PF09101 Exotoxin A binding Y89_4204 PF09102 Exotoxin A, targeting Y89_4205 PF13520 Amino acid permease Y89_4206 PF00465 Iron-containing alcohol dehydrogenase Y89_4207 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4207 PF03466 LysR substrate binding domain Y89_4208 PF07690 Major Facilitator Superfamily Y89_4209 PF12710 haloacid dehalogenase-like hydrolase Y89_4210 PF00392 Bacterial regulatory proteins, gntR family Y89_4210 PF07702 UTRA domain Y89_4211 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4211 PF03466 LysR substrate binding domain Y89_4212 PF07883 Cupin domain Y89_4213 PF00188 Cysteine-rich secretory protein family Y89_4214 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4214 PF03466 LysR substrate binding domain Y89_4215 PF08240 Alcohol dehydrogenase GroES-like domain Y89_4215 PF13602 Zinc-binding dehydrogenase Y89_4216 PF00196 Bacterial regulatory proteins, luxR family Y89_4216 PF03472 Autoinducer binding domain Y89_4217 PF01965 DJ-1/PfpI family Y89_4218 PF04134 Y89_4218 Y89_4221 PF07690 Major Facilitator Superfamily Y89_4222 PF00535 Glycosyl transferase family 2 Y89_4223 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_4224 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4224 PF03466 LysR substrate binding domain Y89_4225 PF00248 Aldo/keto reductase family Y89_4227 PF02146 Sir2 family Y89_4228 PF01966 HD domain Y89_4229 PF09634 Protein of unknown function (DUF2025) Y89_4230 PF01327 Polypeptide deformylase Y89_4231 PF13689 Y89_4231 Y89_4232 PF00990 GGDEF domain Y89_4232 PF17152 Y89_4232 Y89_4233 PF00691 OmpA family Y89_4236 PF13509 S1 domain Y89_4237 PF00884 Sulfatase Y89_4239 PF00005 ABC transporter Y89_4239 PF00664 ABC transporter transmembrane region Y89_4241 PF09905 Uncharacterized conserved protein (DUF2132) Y89_4242 PF07995 Glucose / Sorbosone dehydrogenase Y89_4244 PF01479 S4 domain Y89_4245 PF02311 AraC-like ligand binding domain Y89_4245 PF12833 Helix-turn-helix domain Y89_4246 PF07690 Major Facilitator Superfamily Y89_4247 PF00990 GGDEF domain Y89_4248 PF09694 Y89_4248 Y89_4249 PF02050 Flagellar FliJ protein Y89_4250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y89_4251 PF02108 Y89_4251 Y89_4252 PF01706 FliG C-terminal domain Y89_4252 PF14841 FliG middle domain Y89_4252 PF14842 FliG N-terminal domain Y89_4253 PF01514 Secretory protein of YscJ/FliF family Y89_4253 PF08345 Y89_4253 Y89_4254 PF02049 Y89_4254 Y89_4255 PF00072 Response regulator receiver domain Y89_4255 PF00158 Sigma-54 interaction domain Y89_4255 PF02954 Bacterial regulatory protein, Fis family Y89_4256 PF00512 His Kinase A (phospho-acceptor) domain Y89_4256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4256 PF13188 PAS domain Y89_4257 PF00158 Sigma-54 interaction domain Y89_4257 PF02954 Bacterial regulatory protein, Fis family Y89_4257 PF06490 Y89_4257 Y89_4258 PF05400 Flagellar protein FliT Y89_4259 PF02561 Flagellar protein FliS Y89_4260 PF02465 Y89_4260 Y89_4260 PF07195 Y89_4260 Y89_4260 PF07196 Flagellin hook IN motif Y89_4261 PF03646 FlaG protein Y89_4262 PF00669 Bacterial flagellin N-terminal helical region Y89_4262 PF00700 Bacterial flagellin C-terminal helical region Y89_4262 PF07196 Flagellin hook IN motif Y89_4263 PF00535 Glycosyl transferase family 2 Y89_4263 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Y89_4264 PF12804 MobA-like NTP transferase domain Y89_4265 PF12710 haloacid dehalogenase-like hydrolase Y89_4266 PF13847 Methyltransferase domain Y89_4267 PF00669 Bacterial flagellin N-terminal helical region Y89_4267 PF00700 Bacterial flagellin C-terminal helical region Y89_4268 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y89_4269 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Y89_4269 PF10135 Y89_4269 Y89_4270 PF02119 Y89_4270 Y89_4271 PF02107 Y89_4271 Y89_4272 PF00460 Flagella basal body rod protein Y89_4272 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y89_4273 PF00460 Flagella basal body rod protein Y89_4273 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y89_4274 PF00460 Flagella basal body rod protein Y89_4274 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y89_4274 PF07559 Flagellar basal body protein FlaE Y89_4275 PF03963 Y89_4275 Y89_4275 PF13860 FlgD Ig-like domain Y89_4275 PF13861 FlgD Tudor-like domain Y89_4276 PF00460 Flagella basal body rod protein Y89_4276 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y89_4277 PF00460 Flagella basal body rod protein Y89_4278 PF16703 Y89_4278 Y89_4279 PF10052 Protein of unknown function (DUF2288) Y89_4280 PF13458 Periplasmic binding protein Y89_4281 PF02653 Y89_4281 Y89_4282 PF02653 Y89_4282 Y89_4282 PF11862 Y89_4282 Y89_4283 PF00005 ABC transporter Y89_4283 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y89_4284 PF00005 ABC transporter Y89_4286 PF00183 Hsp90 protein Y89_4286 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4287 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4287 PF03466 LysR substrate binding domain Y89_4288 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_4289 PF04343 Y89_4289 Y89_4292 PF00583 Acetyltransferase (GNAT) family Y89_4293 PF00291 Pyridoxal-phosphate dependent enzyme Y89_4294 PF00892 EamA-like transporter family Y89_4295 PF03334 Y89_4295 Y89_4296 PF04066 Y89_4296 Y89_4297 PF01899 Y89_4297 Y89_4298 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Y89_4299 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Y89_4300 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Y89_4300 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Y89_4300 PF04039 Y89_4300 Y89_4300 PF13244 Y89_4300 Y89_4301 PF05433 Y89_4301 Y89_4303 PF02595 Glycerate kinase family Y89_4304 PF02447 Y89_4304 Y89_4305 PF05651 Y89_4305 Y89_4305 PF13556 PucR C-terminal helix-turn-helix domain Y89_4306 PF01243 Pyridoxamine 5'-phosphate oxidase Y89_4306 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Y89_4307 PF00691 OmpA family Y89_4308 PF00144 Beta-lactamase Y89_4310 PF13307 Helicase C-terminal domain Y89_4311 PF05425 Y89_4311 Y89_4313 PF06611 Y89_4313 Y89_4314 PF00691 OmpA family Y89_4316 PF02810 SEC-C motif Y89_4318 PF03458 Y89_4318 Y89_4320 PF03168 Late embryogenesis abundant protein Y89_4322 PF00043 Glutathione S-transferase, C-terminal domain Y89_4322 PF02798 Glutathione S-transferase, N-terminal domain Y89_4323 PF01804 Penicillin amidase Y89_4324 PF02646 Y89_4324 Y89_4325 PF08808 Y89_4325 Y89_4326 PF01381 Helix-turn-helix Y89_4326 PF09722 Y89_4326 Y89_4327 PF01266 FAD dependent oxidoreductase Y89_4328 PF00171 Aldehyde dehydrogenase family Y89_4330 PF03573 outer membrane porin, OprD family Y89_4331 PF03060 Nitronate monooxygenase Y89_4332 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_4333 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4333 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_4333 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4334 PF00378 Enoyl-CoA hydratase/isomerase family Y89_4335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4336 PF03061 Thioesterase superfamily Y89_4337 PF07690 Major Facilitator Superfamily Y89_4338 PF01575 MaoC like domain Y89_4338 PF13452 N-terminal half of MaoC dehydratase Y89_4339 PF13380 CoA binding domain Y89_4339 PF13549 ATP-grasp domain Y89_4339 PF13607 Succinyl-CoA ligase like flavodoxin domain Y89_4340 PF02803 Thiolase, C-terminal domain Y89_4341 PF01796 Y89_4341 Y89_4341 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) Y89_4342 PF01614 Bacterial transcriptional regulator Y89_4342 PF09339 IclR helix-turn-helix domain Y89_4343 PF00535 Glycosyl transferase family 2 Y89_4344 PF01259 SAICAR synthetase Y89_4345 PF12706 Beta-lactamase superfamily domain Y89_4346 PF06804 NlpB/DapX lipoprotein Y89_4347 PF00701 Dihydrodipicolinate synthetase family Y89_4348 PF13740 ACT domain Y89_4349 PF00578 AhpC/TSA family Y89_4350 PF01594 Y89_4350 Y89_4351 PF01206 Sulfurtransferase TusA Y89_4352 PF01435 Peptidase family M48 Y89_4352 PF14559 Tetratricopeptide repeat Y89_4353 PF02445 Quinolinate synthetase A protein Y89_4354 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4354 PF03466 LysR substrate binding domain Y89_4355 PF00117 Glutamine amidotransferase class-I Y89_4356 PF00425 chorismate binding enzyme Y89_4356 PF04715 Anthranilate synthase component I, N terminal region Y89_4357 PF00753 Metallo-beta-lactamase superfamily Y89_4358 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y89_4358 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y89_4359 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y89_4359 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y89_4361 PF00501 AMP-binding enzyme Y89_4361 PF13193 AMP-binding enzyme C-terminal domain Y89_4362 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y89_4362 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Y89_4363 PF00577 Outer membrane usher protein Y89_4363 PF13953 PapC C-terminal domain Y89_4363 PF13954 PapC N-terminal domain Y89_4364 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y89_4364 PF02753 Pili assembly chaperone PapD, C-terminal domain Y89_4365 PF00419 Fimbrial protein Y89_4367 PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal Y89_4369 PF03061 Thioesterase superfamily Y89_4370 PF13276 Y89_4370 Y89_4370 PF13683 Y89_4370 Y89_4371 PF01527 Transposase Y89_4372 PF01024 Colicin pore forming domain Y89_4373 PF01527 Transposase Y89_4374 PF13462 Thioredoxin Y89_4377 PF01527 Transposase Y89_4378 PF00665 Integrase core domain Y89_4378 PF13276 Y89_4378 Y89_4379 PF06508 Queuosine biosynthesis protein QueC Y89_4380 PF04055 Radical SAM superfamily Y89_4380 PF13394 4Fe-4S single cluster domain Y89_4381 PF13525 Outer membrane lipoprotein Y89_4381 PF16331 Y89_4381 Y89_4382 PF00691 OmpA family Y89_4383 PF04052 TolB amino-terminal domain Y89_4383 PF07676 WD40-like Beta Propeller Repeat Y89_4384 PF13103 TonB C terminal Y89_4385 PF02472 Biopolymer transport protein ExbD/TolR Y89_4386 PF01618 Y89_4386 Y89_4387 PF03061 Thioesterase superfamily Y89_4388 PF05491 Holliday junction DNA helicase ruvB C-terminus Y89_4388 PF05496 Holliday junction DNA helicase ruvB N-terminus Y89_4389 PF01330 RuvA N terminal domain Y89_4389 PF07499 RuvA, C-terminal domain Y89_4389 PF14520 Helix-hairpin-helix domain Y89_4390 PF02075 Crossover junction endodeoxyribonuclease RuvC Y89_4391 PF01709 Transcriptional regulator Y89_4392 PF00152 tRNA synthetases class II (D, K and N) Y89_4392 PF01336 OB-fold nucleic acid binding domain Y89_4392 PF02938 GAD domain Y89_4393 PF00210 Ferritin-like domain Y89_4394 PF00313 'Cold-shock' DNA-binding domain Y89_4395 PF04102 SlyX Y89_4396 PF01230 HIT domain Y89_4399 PF03061 Thioesterase superfamily Y89_4400 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y89_4400 PF03129 Anticodon binding domain Y89_4400 PF04073 Aminoacyl-tRNA editing domain Y89_4402 PF00708 Acylphosphatase Y89_4403 PF00578 AhpC/TSA family Y89_4406 PF03631 Y89_4406 Y89_4407 PF03960 ArsC family Y89_4408 PF03358 NADPH-dependent FMN reductase Y89_4409 PF09842 Y89_4409 Y89_4411 PF00308 Bacterial dnaA protein Y89_4412 PF09839 Y89_4412 Y89_4413 PF00586 AIR synthase related protein, N-terminal domain Y89_4413 PF02769 AIR synthase related protein, C-terminal domain Y89_4414 PF00551 Formyl transferase Y89_4415 PF11306 Protein of unknown function (DUF3108) Y89_4416 PF12802 MarR family Y89_4417 PF13192 Thioredoxin domain Y89_4418 PF09630 Domain of unknown function (DUF2024) Y89_4419 PF07073 Modulator of Rho-dependent transcription termination (ROF) Y89_4421 PF02706 Chain length determinant protein Y89_4421 PF13807 Y89_4421 Y89_4422 PF09831 Y89_4422 Y89_4423 PF05118 Aspartyl/Asparaginyl beta-hydroxylase Y89_4424 PF03819 MazG nucleotide pyrophosphohydrolase domain Y89_4425 PF02824 TGS domain Y89_4425 PF04607 Region found in RelA / SpoT proteins Y89_4425 PF13291 ACT domain Y89_4425 PF13328 HD domain Y89_4426 PF05958 tRNA (Uracil-5-)-methyltransferase Y89_4427 PF00291 Pyridoxal-phosphate dependent enzyme Y89_4428 PF00593 TonB dependent receptor Y89_4428 PF07715 TonB-dependent Receptor Plug Domain Y89_4429 PF00512 His Kinase A (phospho-acceptor) domain Y89_4429 PF00672 HAMP domain Y89_4429 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4429 PF16750 Y89_4429 Y89_4430 PF00072 Response regulator receiver domain Y89_4430 PF00486 Transcriptional regulatory protein, C terminal Y89_4431 PF00072 Response regulator receiver domain Y89_4431 PF00512 His Kinase A (phospho-acceptor) domain Y89_4431 PF01627 Hpt domain Y89_4431 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4431 PF09984 Y89_4431 Y89_4432 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_4432 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_4434 PF03724 META domain Y89_4435 PF00884 Sulfatase Y89_4435 PF11893 Y89_4435 Y89_4436 PF00817 impB/mucB/samB family Y89_4436 PF11798 IMS family HHH motif Y89_4439 PF03706 Y89_4439 Y89_4439 PF09924 Uncharacterized conserved protein (DUF2156) Y89_4440 PF06057 Bacterial virulence protein (VirJ) Y89_4441 PF01292 Prokaryotic cytochrome b561 Y89_4442 PF02705 Y89_4442 Y89_4443 PF00919 Uncharacterized protein family UPF0004 Y89_4443 PF01938 TRAM domain Y89_4443 PF04055 Radical SAM superfamily Y89_4444 PF07308 Y89_4444 Y89_4446 PF00571 CBS domain Y89_4446 PF01769 Divalent cation transporter Y89_4446 PF03448 MgtE intracellular N domain Y89_4447 PF13511 Y89_4447 Y89_4450 PF05449 Y89_4450 Y89_4451 PF16931 Y89_4451 Y89_4453 PF00717 Peptidase S24-like Y89_4453 PF01381 Helix-turn-helix Y89_4454 PF02599 Global regulator protein family Y89_4455 PF00696 Amino acid kinase family Y89_4455 PF01842 ACT domain Y89_4455 PF13840 ACT domain Y89_4456 PF01411 tRNA synthetases class II (A) Y89_4456 PF02272 DHHA1 domain Y89_4456 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Y89_4457 PF01212 Beta-eliminating lyase Y89_4458 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Y89_4460 PF04996 Succinylarginine dihydrolase Y89_4461 PF00171 Aldehyde dehydrogenase family Y89_4462 PF04958 Arginine N-succinyltransferase beta subunit Y89_4463 PF04958 Arginine N-succinyltransferase beta subunit Y89_4464 PF00202 Aminotransferase class-III Y89_4466 PF12833 Helix-turn-helix domain Y89_4467 PF00005 ABC transporter Y89_4468 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Y89_4469 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4470 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4471 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_4472 PF00501 AMP-binding enzyme Y89_4472 PF13193 AMP-binding enzyme C-terminal domain Y89_4472 PF16177 Y89_4472 Y89_4473 PF06808 Y89_4473 Y89_4474 PF04290 Y89_4474 Y89_4475 PF03480 Bacterial extracellular solute-binding protein, family 7 Y89_4476 PF03328 HpcH/HpaI aldolase/citrate lyase family Y89_4477 PF02515 CoA-transferase family III Y89_4478 PF03972 MmgE/PrpD family Y89_4479 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_4480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4480 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_4480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4481 PF13452 N-terminal half of MaoC dehydratase Y89_4482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4482 PF03466 LysR substrate binding domain Y89_4483 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4483 PF03466 LysR substrate binding domain Y89_4484 PF04632 Y89_4484 Y89_4485 PF10976 Protein of unknown function (DUF2790) Y89_4486 PF00158 Sigma-54 interaction domain Y89_4486 PF00989 PAS fold Y89_4486 PF01842 ACT domain Y89_4487 PF00351 Biopterin-dependent aromatic amino acid hydroxylase Y89_4488 PF01329 Pterin 4 alpha carbinolamine dehydratase Y89_4489 PF00155 Aminotransferase class I and II Y89_4490 PF00768 D-alanyl-D-alanine carboxypeptidase Y89_4491 PF00472 RF-1 domain Y89_4492 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme Y89_4493 PF00324 Amino acid permease Y89_4494 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_4494 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Y89_4495 PF02311 AraC-like ligand binding domain Y89_4495 PF12833 Helix-turn-helix domain Y89_4496 PF07235 Y89_4496 Y89_4497 PF00107 Zinc-binding dehydrogenase Y89_4497 PF08240 Alcohol dehydrogenase GroES-like domain Y89_4498 PF14518 Iron-containing redox enzyme Y89_4499 PF00563 EAL domain Y89_4499 PF00989 PAS fold Y89_4499 PF00990 GGDEF domain Y89_4500 PF00005 ABC transporter Y89_4500 PF00664 ABC transporter transmembrane region Y89_4501 PF01323 DSBA-like thioredoxin domain Y89_4502 PF00581 Rhodanese-like domain Y89_4503 PF01722 BolA-like protein Y89_4504 PF09832 Uncharacterized protein conserved in bacteria (DUF2059) Y89_4505 PF10974 Y89_4505 Y89_4506 PF00206 Lyase Y89_4506 PF10415 Fumarase C C-terminus Y89_4507 PF02525 Flavodoxin-like fold Y89_4508 PF03067 Chitin binding domain Y89_4509 PF00291 Pyridoxal-phosphate dependent enzyme Y89_4510 PF01124 MAPEG family Y89_4511 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_4512 PF00578 AhpC/TSA family Y89_4512 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y89_4513 PF00672 HAMP domain Y89_4513 PF00989 PAS fold Y89_4513 PF00990 GGDEF domain Y89_4513 PF05228 Y89_4513 Y89_4514 PF07264 Etoposide-induced protein 2 Y89_4515 PF04734 Neutral/alkaline non-lysosomal ceramidase Y89_4515 PF17048 Y89_4515 Y89_4516 PF04185 Phosphoesterase family Y89_4516 PF05506 Y89_4516 Y89_4518 PF13439 Glycosyltransferase Family 4 Y89_4518 PF13692 Glycosyl transferases group 1 Y89_4519 PF02645 Uncharacterised protein, DegV family COG1307 Y89_4520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_4521 PF00440 Bacterial regulatory proteins, tetR family Y89_4521 PF16925 Y89_4521 Y89_4522 PF00255 Glutathione peroxidase Y89_4523 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y89_4524 PF00871 Acetokinase family Y89_4525 PF01515 Phosphate acetyl/butaryl transferase Y89_4525 PF07085 DRTGG domain Y89_4525 PF13500 AAA domain Y89_4526 PF01553 Acyltransferase Y89_4527 PF00691 OmpA family Y89_4527 PF13488 Y89_4527 Y89_4528 PF00753 Metallo-beta-lactamase superfamily Y89_4529 PF12625 Y89_4529 Y89_4529 PF12833 Helix-turn-helix domain Y89_4530 PF10118 Y89_4530 Y89_4531 PF00561 alpha/beta hydrolase fold Y89_4532 PF00440 Bacterial regulatory proteins, tetR family Y89_4535 PF00589 Phage integrase family Y89_4538 PF13744 Helix-turn-helix domain Y89_4540 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_4541 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4541 PF03466 LysR substrate binding domain Y89_4542 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4542 PF03466 LysR substrate binding domain Y89_4543 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease Y89_4544 PF00266 Aminotransferase class-V Y89_4545 PF05853 Prokaryotic protein of unknown function (DUF849) Y89_4546 PF07690 Major Facilitator Superfamily Y89_4547 PF13419 Haloacid dehalogenase-like hydrolase Y89_4548 PF01566 Y89_4548 Y89_4549 PF08327 Activator of Hsp90 ATPase homolog 1-like protein Y89_4550 PF01510 N-acetylmuramoyl-L-alanine amidase Y89_4553 PF00248 Aldo/keto reductase family Y89_4554 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_4555 PF11804 Y89_4555 Y89_4556 PF03929 Y89_4556 Y89_4557 PF12365 Y89_4557 Y89_4558 PF00176 SNF2 family N-terminal domain Y89_4558 PF00271 Helicase conserved C-terminal domain Y89_4559 PF13489 Methyltransferase domain Y89_4560 PF00392 Bacterial regulatory proteins, gntR family Y89_4560 PF07729 FCD domain Y89_4561 PF13714 Phosphoenolpyruvate phosphomutase Y89_4562 PF00285 Citrate synthase Y89_4563 PF00330 Aconitase family (aconitate hydratase) Y89_4563 PF00694 Aconitase C-terminal domain Y89_4564 PF04303 PrpF protein Y89_4565 PF03972 MmgE/PrpD family Y89_4566 PF02311 AraC-like ligand binding domain Y89_4566 PF12833 Helix-turn-helix domain Y89_4567 PF01925 Y89_4567 Y89_4568 PF00324 Amino acid permease Y89_4570 PF00912 Transglycosylase Y89_4571 PF13304 AAA domain Y89_4572 PF00893 Small Multidrug Resistance protein Y89_4573 PF02525 Flavodoxin-like fold Y89_4574 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4574 PF03466 LysR substrate binding domain Y89_4575 PF00474 Sodium:solute symporter family Y89_4576 PF00171 Aldehyde dehydrogenase family Y89_4576 PF01619 Proline dehydrogenase Y89_4576 PF14850 DNA-binding domain of Proline dehydrogenase Y89_4577 PF00593 TonB dependent receptor Y89_4577 PF07715 TonB-dependent Receptor Plug Domain Y89_4578 PF12833 Helix-turn-helix domain Y89_4579 PF00004 ATPase family associated with various cellular activities (AAA) Y89_4579 PF02190 ATP-dependent protease La (LON) domain Y89_4579 PF05362 Lon protease (S16) C-terminal proteolytic domain Y89_4580 PF09394 Chagasin family peptidase inhibitor I42 Y89_4583 PF13649 Methyltransferase domain Y89_4584 PF08003 Protein of unknown function (DUF1698) Y89_4585 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Y89_4586 PF02565 Recombination protein O C terminal Y89_4586 PF11967 Recombination protein O N terminal Y89_4587 PF01926 50S ribosome-binding GTPase Y89_4587 PF07650 KH domain Y89_4588 PF00035 Double-stranded RNA binding motif Y89_4588 PF14622 Ribonuclease-III-like Y89_4589 PF16137 Y89_4589 Y89_4590 PF00717 Peptidase S24-like Y89_4591 PF00009 Elongation factor Tu GTP binding domain Y89_4591 PF00679 Elongation factor G C-terminus Y89_4591 PF03144 Elongation factor Tu domain 2 Y89_4591 PF06421 GTP-binding protein LepA C-terminus Y89_4592 PF13180 PDZ domain Y89_4592 PF13365 Trypsin-like peptidase domain Y89_4593 PF04246 Y89_4593 Y89_4594 PF03888 MucB/RseB family Y89_4594 PF17188 Y89_4594 Y89_4595 PF03872 Anti sigma-E protein RseA, N-terminal domain Y89_4595 PF03873 Anti sigma-E protein RseA, C-terminal domain Y89_4596 PF04542 Sigma-70 region 2 Y89_4596 PF08281 Sigma-70, region 4 Y89_4597 PF00890 FAD binding domain Y89_4597 PF02910 Fumarate reductase flavoprotein C-term Y89_4599 PF03937 Flavinator of succinate dehydrogenase Y89_4601 PF08668 HDOD domain Y89_4602 PF00512 His Kinase A (phospho-acceptor) domain Y89_4602 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4602 PF08521 Y89_4602 Y89_4603 PF00072 Response regulator receiver domain Y89_4603 PF00486 Transcriptional regulatory protein, C terminal Y89_4604 PF03573 outer membrane porin, OprD family Y89_4605 PF03401 Tripartite tricarboxylate transporter family receptor Y89_4606 PF07331 Y89_4606 Y89_4607 PF01970 Y89_4607 Y89_4608 PF05145 Y89_4608 Y89_4609 PF03167 Uracil DNA glycosylase superfamily Y89_4610 PF04294 Y89_4610 Y89_4611 PF02311 AraC-like ligand binding domain Y89_4611 PF12833 Helix-turn-helix domain Y89_4612 PF00171 Aldehyde dehydrogenase family Y89_4613 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4613 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_4613 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4614 PF00378 Enoyl-CoA hydratase/isomerase family Y89_4615 PF16113 Y89_4615 Y89_4616 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y89_4616 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Y89_4617 PF07885 Ion channel Y89_4618 PF13460 NADH(P)-binding Y89_4619 PF00753 Metallo-beta-lactamase superfamily Y89_4619 PF14863 Alkyl sulfatase dimerisation Y89_4619 PF14864 Alkyl sulfatase C-terminal Y89_4620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4620 PF03466 LysR substrate binding domain Y89_4622 PF06611 Y89_4622 Y89_4625 PF09925 Y89_4625 Y89_4626 PF16106 Y89_4626 Y89_4627 PF14375 Y89_4627 Y89_4628 PF00849 RNA pseudouridylate synthase Y89_4628 PF01479 S4 domain Y89_4629 PF03734 L,D-transpeptidase catalytic domain Y89_4630 PF13645 Y89_4630 Y89_4631 PF00561 alpha/beta hydrolase fold Y89_4632 PF00589 Phage integrase family Y89_4632 PF13356 Domain of unknown function (DUF4102) Y89_4634 PF05930 Prophage CP4-57 regulatory protein (AlpA) Y89_4635 PF13614 AAA domain Y89_4638 PF11198 Y89_4638 Y89_4640 PF08900 Y89_4640 Y89_4641 PF11358 Y89_4641 Y89_4642 PF00436 Single-strand binding protein family Y89_4643 PF01131 DNA topoisomerase Y89_4643 PF01396 Y89_4643 Y89_4643 PF01751 Toprim domain Y89_4650 PF12101 Y89_4650 Y89_4651 PF11679 Y89_4651 Y89_4656 PF00271 Helicase conserved C-terminal domain Y89_4660 PF01464 Transglycosylase SLT domain Y89_4661 PF11072 Y89_4661 Y89_4662 PF12696 TraM recognition site of TraD and TraG Y89_4663 PF14348 Y89_4663 Y89_4665 PF09686 Y89_4665 Y89_4666 PF11660 Y89_4666 Y89_4667 PF11190 Y89_4667 Y89_4668 PF11990 Y89_4668 Y89_4669 PF11444 Y89_4669 Y89_4670 PF11920 Y89_4670 Y89_4673 PF11130 Y89_4673 Y89_4674 PF13462 Thioredoxin Y89_4675 PF04002 RadC-like JAB domain Y89_4676 PF07511 Y89_4676 Y89_4677 PF06834 Y89_4677 Y89_4680 PF07916 Y89_4680 Y89_4681 PF12553 Y89_4681 Y89_4682 PF11663 Y89_4682 Y89_4683 PF15937 Y89_4683 Y89_4684 PF07514 Putative helicase Y89_4684 PF07515 Protein of unknown function (DUF1528) Y89_4686 PF01526 Y89_4686 Y89_4686 PF13700 Y89_4686 Y89_4687 PF01526 Y89_4687 Y89_4687 PF13700 Y89_4687 Y89_4688 PF00239 Resolvase, N terminal domain Y89_4688 PF02796 Helix-turn-helix domain of resolvase Y89_4689 PF05598 Y89_4689 Y89_4689 PF13751 Y89_4689 Y89_4690 PF00589 Phage integrase family Y89_4690 PF13495 Phage integrase, N-terminal SAM-like domain Y89_4691 PF10706 Aminoglycoside-2''-adenylyltransferase Y89_4692 PF00905 Penicillin binding protein transpeptidase domain Y89_4693 PF13523 Acetyltransferase (GNAT) domain Y89_4694 PF00239 Resolvase, N terminal domain Y89_4695 PF01526 Y89_4695 Y89_4695 PF13700 Y89_4695 Y89_4696 PF04986 Y89_4696 Y89_4696 PF14319 Y89_4696 Y89_4697 PF00118 TCP-1/cpn60 chaperonin family Y89_4697 PF13495 Phage integrase, N-terminal SAM-like domain Y89_4698 PF01636 Phosphotransferase enzyme family Y89_4699 PF04986 Y89_4699 Y89_4699 PF14319 Y89_4699 Y89_4700 PF00118 TCP-1/cpn60 chaperonin family Y89_4700 PF13495 Phage integrase, N-terminal SAM-like domain Y89_4701 PF00809 Pterin binding enzyme Y89_4702 PF00583 Acetyltransferase (GNAT) family Y89_4703 PF07690 Major Facilitator Superfamily Y89_4704 PF13610 Y89_4704 Y89_4705 PF00376 MerR family regulatory protein Y89_4705 PF09278 MerR, DNA binding Y89_4706 PF02411 Y89_4706 Y89_4707 PF00403 Heavy-metal-associated domain Y89_4708 PF00403 Heavy-metal-associated domain Y89_4708 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y89_4708 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_4709 PF13411 MerR HTH family regulatory protein Y89_4710 PF13610 Y89_4710 Y89_4711 PF01555 DNA methylase Y89_4712 PF03235 Y89_4712 Y89_4712 PF07510 Y89_4712 Y89_4713 PF14335 Y89_4713 Y89_4714 PF00176 SNF2 family N-terminal domain Y89_4714 PF00271 Helicase conserved C-terminal domain Y89_4715 PF13280 Y89_4715 Y89_4716 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4716 PF03466 LysR substrate binding domain Y89_4717 PF00004 ATPase family associated with various cellular activities (AAA) Y89_4718 PF00082 Subtilase family Y89_4720 PF11006 Y89_4720 Y89_4721 PF09857 Y89_4721 Y89_4722 PF13527 Acetyltransferase (GNAT) domain Y89_4723 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_4724 PF03992 Antibiotic biosynthesis monooxygenase Y89_4725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4725 PF03466 LysR substrate binding domain Y89_4726 PF00563 EAL domain Y89_4727 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_4728 PF00535 Glycosyl transferase family 2 Y89_4729 PF01425 Amidase Y89_4730 PF00083 Sugar (and other) transporter Y89_4731 PF04116 Y89_4731 Y89_4732 PF12833 Helix-turn-helix domain Y89_4733 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4733 PF03466 LysR substrate binding domain Y89_4735 PF13145 PPIC-type PPIASE domain Y89_4736 PF10722 Putative bacterial sensory transduction regulator Y89_4738 PF16930 Y89_4738 Y89_4739 PF13103 TonB C terminal Y89_4740 PF02472 Biopolymer transport protein ExbD/TolR Y89_4741 PF01618 Y89_4741 Y89_4741 PF10102 Y89_4741 Y89_4741 PF13385 Concanavalin A-like lectin/glucanases superfamily Y89_4742 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y89_4742 PF08479 POTRA domain, ShlB-type Y89_4743 PF05598 Y89_4743 Y89_4744 PF05860 haemagglutination activity domain Y89_4744 PF12545 Y89_4744 Y89_4745 PF12849 PBP superfamily domain Y89_4746 PF00482 Type II secretion system (T2SS), protein F Y89_4747 PF00437 Type II/IV secretion system protein Y89_4748 PF00263 Y89_4748 Y89_4748 PF03958 Bacterial type II/III secretion system short domain Y89_4749 PF04612 Type II secretion system (T2SS), protein M Y89_4750 PF05134 Type II secretion system (T2SS), protein L Y89_4750 PF12693 GspL periplasmic domain Y89_4751 PF03934 Type II secretion system (T2SS), protein K Y89_4752 PF07963 Prokaryotic N-terminal methylation motif Y89_4752 PF08334 Type II secretion system (T2SS), protein G Y89_4753 PF02501 Type II secretion system (T2SS), protein I Y89_4753 PF07963 Prokaryotic N-terminal methylation motif Y89_4754 PF11356 Type IV pilus biogenesis Y89_4755 PF07963 Prokaryotic N-terminal methylation motif Y89_4755 PF12019 Type II transport protein GspH Y89_4756 PF07963 Prokaryotic N-terminal methylation motif Y89_4757 PF04773 FecR protein Y89_4757 PF16220 Y89_4757 Y89_4758 PF04542 Sigma-70 region 2 Y89_4758 PF08281 Sigma-70, region 4 Y89_4759 PF13103 TonB C terminal Y89_4761 PF01126 Heme oxygenase Y89_4763 PF00817 impB/mucB/samB family Y89_4764 PF02811 PHP domain Y89_4764 PF07733 Bacterial DNA polymerase III alpha subunit Y89_4764 PF14579 Helix-hairpin-helix motif Y89_4765 PF00149 Calcineurin-like phosphoesterase Y89_4765 PF12320 Type 5 capsule protein repressor C-terminal domain Y89_4766 PF13476 AAA domain Y89_4766 PF13558 Putative exonuclease SbcCD, C subunit Y89_4767 PF13538 UvrD-like helicase C-terminal domain Y89_4767 PF13604 AAA domain Y89_4768 PF00580 UvrD/REP helicase N-terminal domain Y89_4768 PF12705 PD-(D/E)XK nuclease superfamily Y89_4768 PF13361 UvrD-like helicase C-terminal domain Y89_4769 PF04257 Exodeoxyribonuclease V, gamma subunit Y89_4771 PF00892 EamA-like transporter family Y89_4772 PF02311 AraC-like ligand binding domain Y89_4772 PF12833 Helix-turn-helix domain Y89_4773 PF02417 Y89_4773 Y89_4774 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_4776 PF01384 Y89_4776 Y89_4777 PF00512 His Kinase A (phospho-acceptor) domain Y89_4777 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4777 PF08447 PAS fold Y89_4777 PF08448 PAS fold Y89_4778 PF07811 Y89_4778 Y89_4779 PF01478 Type IV leader peptidase family Y89_4780 PF00072 Response regulator receiver domain Y89_4780 PF00196 Bacterial regulatory proteins, luxR family Y89_4781 PF09977 Y89_4781 Y89_4782 PF12266 Y89_4782 Y89_4784 PF00482 Type II secretion system (T2SS), protein F Y89_4785 PF00482 Type II secretion system (T2SS), protein F Y89_4786 PF00437 Type II/IV secretion system protein Y89_4787 PF16968 Y89_4787 Y89_4788 PF00263 Y89_4788 Y89_4788 PF13629 Y89_4788 Y89_4789 PF08666 SAF domain Y89_4789 PF16976 Y89_4789 Y89_4790 PF04964 Y89_4790 Y89_4791 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_4791 PF00672 HAMP domain Y89_4791 PF02743 Cache domain Y89_4792 PF05872 Y89_4792 Y89_4793 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_4793 PF00672 HAMP domain Y89_4793 PF02743 Cache domain Y89_4794 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_4794 PF00672 HAMP domain Y89_4794 PF02743 Cache domain Y89_4795 PF00534 Glycosyl transferases group 1 Y89_4795 PF13439 Glycosyltransferase Family 4 Y89_4796 PF10096 Y89_4796 Y89_4797 PF03706 Y89_4797 Y89_4799 PF00551 Formyl transferase Y89_4801 PF00929 Exonuclease Y89_4801 PF08411 Exonuclease C-terminal Y89_4803 PF06271 Y89_4803 Y89_4804 PF01944 Y89_4804 Y89_4805 PF13559 Y89_4805 Y89_4806 PF14258 Y89_4806 Y89_4807 PF07726 ATPase family associated with various cellular activities (AAA) Y89_4808 PF01882 Y89_4808 Y89_4809 PF07238 PilZ domain Y89_4810 PF13511 Y89_4810 Y89_4812 PF13174 Tetratricopeptide repeat Y89_4813 PF00582 Universal stress protein family Y89_4814 PF00224 Pyruvate kinase, barrel domain Y89_4814 PF02887 Pyruvate kinase, alpha/beta domain Y89_4815 PF00378 Enoyl-CoA hydratase/isomerase family Y89_4816 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_4816 PF00175 Oxidoreductase NAD-binding domain Y89_4817 PF00990 GGDEF domain Y89_4818 PF05681 Y89_4818 Y89_4818 PF05683 Fumarase C-terminus Y89_4819 PF01566 Y89_4819 Y89_4820 PF13467 Ribbon-helix-helix domain Y89_4821 PF01965 DJ-1/PfpI family Y89_4822 PF11008 Y89_4822 Y89_4823 PF01757 Y89_4823 Y89_4824 PF13091 PLD-like domain Y89_4825 PF04264 YceI-like domain Y89_4826 PF09339 IclR helix-turn-helix domain Y89_4827 PF01425 Amidase Y89_4828 PF00083 Sugar (and other) transporter Y89_4828 PF07690 Major Facilitator Superfamily Y89_4829 PF01546 Peptidase family M20/M25/M40 Y89_4829 PF07687 Peptidase dimerisation domain Y89_4830 PF04264 YceI-like domain Y89_4832 PF00144 Beta-lactamase Y89_4833 PF00753 Metallo-beta-lactamase superfamily Y89_4835 PF13444 Acetyltransferase (GNAT) domain Y89_4836 PF01553 Acyltransferase Y89_4837 PF00582 Universal stress protein family Y89_4838 PF04336 Y89_4838 Y89_4839 PF12840 Helix-turn-helix domain Y89_4840 PF07690 Major Facilitator Superfamily Y89_4841 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_4842 PF09012 FeoC like transcriptional regulator Y89_4843 PF02421 Ferrous iron transport protein B Y89_4843 PF07664 Y89_4843 Y89_4843 PF07670 Nucleoside recognition Y89_4844 PF04023 FeoA domain Y89_4847 PF01370 NAD dependent epimerase/dehydratase family Y89_4848 PF03435 Saccharopine dehydrogenase Y89_4849 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_4849 PF03466 LysR substrate binding domain Y89_4850 PF10000 ACT domain Y89_4850 PF13840 ACT domain Y89_4851 PF01810 Y89_4851 Y89_4852 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Y89_4852 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Y89_4855 PF12483 Y89_4855 Y89_4856 PF04011 LemA family Y89_4857 PF09375 Imelysin Y89_4858 PF06537 Y89_4858 Y89_4859 PF09375 Imelysin Y89_4860 PF07433 Y89_4860 Y89_4861 PF16576 Y89_4861 Y89_4862 PF00873 AcrB/AcrD/AcrF family Y89_4863 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Y89_4865 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family Y89_4868 PF00512 His Kinase A (phospho-acceptor) domain Y89_4868 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4869 PF00072 Response regulator receiver domain Y89_4869 PF00486 Transcriptional regulatory protein, C terminal Y89_4870 PF01569 PAP2 superfamily Y89_4871 PF02641 Uncharacterized ACR, COG1993 Y89_4872 PF02537 Y89_4872 Y89_4873 PF08857 Putative ParB-like nuclease Y89_4874 PF00118 TCP-1/cpn60 chaperonin family Y89_4875 PF00166 Chaperonin 10 Kd subunit Y89_4876 PF04186 Y89_4876 Y89_4877 PF10615 Protein of unknown function (DUF2470) Y89_4877 PF13883 Pyridoxamine 5'-phosphate oxidase Y89_4878 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_4879 PF04338 Protein of unknown function, DUF481 Y89_4880 PF04338 Protein of unknown function, DUF481 Y89_4881 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y89_4882 PF13000 Y89_4882 Y89_4883 PF00924 Mechanosensitive ion channel Y89_4883 PF05552 Conserved TM helix Y89_4884 PF04461 Protein of unknown function (DUF520) Y89_4885 PF00072 Response regulator receiver domain Y89_4885 PF00990 GGDEF domain Y89_4886 PF02558 Ketopantoate reductase PanE/ApbA Y89_4886 PF08546 Ketopantoate reductase PanE/ApbA C terminal Y89_4887 PF00512 His Kinase A (phospho-acceptor) domain Y89_4887 PF00672 HAMP domain Y89_4887 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4887 PF08448 PAS fold Y89_4888 PF01923 Cobalamin adenosyltransferase Y89_4889 PF02581 Thiamine monophosphate synthase/TENI Y89_4889 PF14815 NUDIX domain Y89_4890 PF13410 Glutathione S-transferase, C-terminal domain Y89_4890 PF13417 Glutathione S-transferase, N-terminal domain Y89_4891 PF01960 ArgJ family Y89_4892 PF01043 SecA preprotein cross-linking domain Y89_4892 PF02810 SEC-C motif Y89_4892 PF07516 SecA Wing and Scaffold domain Y89_4892 PF07517 SecA DEAD-like domain Y89_4893 PF01551 Peptidase family M23 Y89_4894 PF05258 Y89_4894 Y89_4895 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Y89_4896 PF00091 Tubulin/FtsZ family, GTPase domain Y89_4896 PF12327 FtsZ family, C-terminal domain Y89_4897 PF02491 SHS2 domain inserted in FTSA Y89_4897 PF14450 Cell division protein FtsA Y89_4898 PF03799 Cell division protein FtsQ Y89_4898 PF08478 POTRA domain, FtsQ-type Y89_4899 PF01820 D-ala D-ala ligase N-terminus Y89_4899 PF07478 D-ala D-ala ligase C-terminus Y89_4900 PF01225 Mur ligase family, catalytic domain Y89_4900 PF02875 Mur ligase family, glutamate ligase domain Y89_4900 PF08245 Mur ligase middle domain Y89_4901 PF03033 Glycosyltransferase family 28 N-terminal domain Y89_4901 PF04101 Glycosyltransferase family 28 C-terminal domain Y89_4902 PF01098 Y89_4902 Y89_4903 PF02875 Mur ligase family, glutamate ligase domain Y89_4903 PF08245 Mur ligase middle domain Y89_4904 PF00953 Glycosyl transferase family 4 Y89_4904 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Y89_4905 PF01225 Mur ligase family, catalytic domain Y89_4905 PF02875 Mur ligase family, glutamate ligase domain Y89_4905 PF08245 Mur ligase middle domain Y89_4906 PF01225 Mur ligase family, catalytic domain Y89_4906 PF02875 Mur ligase family, glutamate ligase domain Y89_4906 PF08245 Mur ligase middle domain Y89_4907 PF00905 Penicillin binding protein transpeptidase domain Y89_4907 PF03717 Penicillin-binding Protein dimerisation domain Y89_4908 PF04999 Y89_4908 Y89_4909 PF01795 MraW methylase family Y89_4910 PF02381 MraZ protein Y89_4911 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y89_4912 PF04348 LppC putative lipoprotein Y89_4914 PF13580 SIS domain Y89_4915 PF04972 BON domain Y89_4916 PF04386 Stringent starvation protein B Y89_4917 PF00043 Glutathione S-transferase, C-terminal domain Y89_4917 PF13417 Glutathione S-transferase, N-terminal domain Y89_4918 PF02167 Cytochrome C1 family Y89_4919 PF00032 Cytochrome b(C-terminal)/b6/petD Y89_4919 PF00033 Cytochrome b(N-terminal)/b6/petB Y89_4920 PF00355 Rieske [2Fe-2S] domain Y89_4920 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Y89_4921 PF00380 Ribosomal protein S9/S16 Y89_4922 PF00572 Ribosomal protein L13 Y89_4923 PF00248 Aldo/keto reductase family Y89_4924 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_4924 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_4924 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_4925 PF12833 Helix-turn-helix domain Y89_4927 PF03969 AFG1-like ATPase Y89_4928 PF00579 tRNA synthetases class I (W and Y) Y89_4929 PF00975 Thioesterase domain Y89_4930 PF06295 Y89_4930 Y89_4931 PF00009 Elongation factor Tu GTP binding domain Y89_4931 PF01583 Adenylylsulphate kinase Y89_4932 PF01507 Phosphoadenosine phosphosulfate reductase family Y89_4933 PF13406 Transglycosylase SLT domain Y89_4934 PF01784 NIF3 (NGG1p interacting factor 3) Y89_4935 PF13180 PDZ domain Y89_4935 PF13365 Trypsin-like peptidase domain Y89_4936 PF00155 Aminotransferase class I and II Y89_4937 PF00815 Histidinol dehydrogenase Y89_4938 PF01634 ATP phosphoribosyltransferase Y89_4939 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Y89_4940 PF01722 BolA-like protein Y89_4941 PF13466 STAS domain Y89_4942 PF05494 Toluene tolerance, Ttg2 Y89_4943 PF02470 Y89_4943 Y89_4944 PF02405 Y89_4944 Y89_4945 PF00005 ABC transporter Y89_4947 PF00571 CBS domain Y89_4947 PF01380 SIS domain Y89_4948 PF08282 haloacid dehalogenase-like hydrolase Y89_4949 PF06835 Lipopolysaccharide-assembly, LptC-related Y89_4950 PF03968 OstA-like protein Y89_4951 PF00005 ABC transporter Y89_4951 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y89_4952 PF00309 Y89_4952 Y89_4952 PF04552 Sigma-54, DNA binding domain Y89_4952 PF04963 Sigma-54 factor, core binding domain Y89_4953 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Y89_4954 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y89_4955 PF03668 Y89_4955 Y89_4956 PF00381 PTS HPr component phosphorylation site Y89_4957 PF02535 Y89_4957 Y89_4958 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Y89_4958 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Y89_4960 PF00206 Lyase Y89_4960 PF10415 Fumarase C C-terminus Y89_4962 PF01523 Putative modulator of DNA gyrase Y89_4963 PF04751 Protein of unknown function (DUF615) Y89_4964 PF01523 Putative modulator of DNA gyrase Y89_4965 PF00795 Carbon-nitrogen hydrolase Y89_4966 PF13116 Y89_4966 Y89_4966 PF13502 Y89_4966 Y89_4967 PF00575 S1 RNA binding domain Y89_4967 PF10150 Ribonuclease E/G family Y89_4968 PF02545 Maf-like protein Y89_4969 PF04093 Y89_4969 Y89_4970 PF04085 rod shape-determining protein MreC Y89_4971 PF06723 MreB/Mbl protein Y89_4972 PF02686 Glu-tRNAGln amidotransferase C subunit Y89_4973 PF01425 Amidase Y89_4974 PF02637 GatB domain Y89_4974 PF02934 GatB/GatE catalytic domain Y89_4975 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Y89_4976 PF02627 Carboxymuconolactone decarboxylase family Y89_4977 PF09906 Y89_4977 Y89_4978 PF08486 Y89_4978 Y89_4978 PF10062 Y89_4978 Y89_4979 PF00207 Alpha-2-macroglobulin family Y89_4979 PF01835 MG2 domain Y89_4979 PF07703 Alpha-2-macroglobulin family N-terminal region Y89_4979 PF10569 Alpha-macro-globulin thiol-ester bond-forming region Y89_4980 PF06672 Y89_4980 Y89_4981 PF09909 Y89_4981 Y89_4982 PF09906 Y89_4982 Y89_4983 PF00072 Response regulator receiver domain Y89_4983 PF02954 Bacterial regulatory protein, Fis family Y89_4984 PF00512 His Kinase A (phospho-acceptor) domain Y89_4984 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_4985 PF04402 Protein of unknown function (DUF541) Y89_4986 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y89_4987 PF03573 outer membrane porin, OprD family Y89_4988 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y89_4989 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4990 PF00528 Binding-protein-dependent transport system inner membrane component Y89_4990 PF12911 Y89_4990 Y89_4991 PF00005 ABC transporter Y89_4991 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y89_4992 PF00005 ABC transporter Y89_4992 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y89_4993 PF01810 Y89_4993 Y89_4994 PF01037 AsnC family Y89_4994 PF13412 Winged helix-turn-helix DNA-binding Y89_4995 PF02626 Allophanate hydrolase subunit 2 Y89_4996 PF02682 Allophanate hydrolase subunit 1 Y89_4997 PF03746 LamB/YcsF family Y89_4998 PF05118 Aspartyl/Asparaginyl beta-hydroxylase Y89_4999 PF00175 Oxidoreductase NAD-binding domain Y89_4999 PF00258 Flavodoxin Y89_4999 PF03929 Y89_4999 Y89_5000 PF00593 TonB dependent receptor Y89_5000 PF07715 TonB-dependent Receptor Plug Domain Y89_5001 PF13640 2OG-Fe(II) oxygenase superfamily Y89_5002 PF08238 Sel1 repeat Y89_5003 PF00884 Sulfatase Y89_5003 PF08019 Y89_5003 Y89_5004 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_5005 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Y89_5005 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Y89_5006 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_5006 PF00672 HAMP domain Y89_5008 PF01510 N-acetylmuramoyl-L-alanine amidase Y89_5009 PF07793 Y89_5009 Y89_5010 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Y89_5010 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Y89_5011 PF00589 Phage integrase family Y89_5011 PF13356 Domain of unknown function (DUF4102) Y89_5012 PF12728 Helix-turn-helix domain Y89_5020 PF12307 Y89_5020 Y89_5023 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Y89_5024 PF00583 Acetyltransferase (GNAT) family Y89_5029 PF16754 Y89_5029 Y89_5030 PF11508 Protein of unknown function (DUF3218) Y89_5032 PF00813 Y89_5032 Y89_5033 PF01313 Y89_5033 Y89_5034 PF01311 Y89_5034 Y89_5035 PF01312 FlhB HrpN YscU SpaS Family Y89_5037 PF00437 Type II/IV secretion system protein Y89_5037 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Y89_5038 PF00482 Type II secretion system (T2SS), protein F Y89_5039 PF01478 Type IV leader peptidase family Y89_5039 PF06750 Y89_5039 Y89_5040 PF01121 Dephospho-CoA kinase Y89_5041 PF03884 Domain of unknown function (DUF329) Y89_5043 PF01891 Cobalt uptake substrate-specific transmembrane region Y89_5045 PF00583 Acetyltransferase (GNAT) family Y89_5046 PF08682 Protein of unknown function (DUF1780) Y89_5048 PF11293 Y89_5048 Y89_5049 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_5050 PF03969 AFG1-like ATPase Y89_5051 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y89_5051 PF08479 POTRA domain, ShlB-type Y89_5052 PF05860 haemagglutination activity domain Y89_5052 PF07581 Y89_5052 Y89_5052 PF13018 Y89_5052 Y89_5053 PF13614 AAA domain Y89_5057 PF10979 Y89_5057 Y89_5058 PF13392 HNH endonuclease Y89_5060 PF00772 DnaB-like helicase N terminal domain Y89_5060 PF03796 DnaB-like helicase C terminal domain Y89_5068 PF04245 Y89_5068 Y89_5069 PF02086 D12 class N6 adenine-specific DNA methyltransferase Y89_5070 PF03869 Arc-like DNA binding domain Y89_5071 PF02195 ParB-like nuclease domain Y89_5072 PF11198 Y89_5072 Y89_5075 PF08900 Y89_5075 Y89_5076 PF11358 Y89_5076 Y89_5077 PF09669 Y89_5077 Y89_5078 PF00436 Single-strand binding protein family Y89_5079 PF01131 DNA topoisomerase Y89_5079 PF01751 Toprim domain Y89_5082 PF00176 SNF2 family N-terminal domain Y89_5082 PF00271 Helicase conserved C-terminal domain Y89_5083 PF01381 Helix-turn-helix Y89_5084 PF10671 Toxin co-regulated pilus biosynthesis protein Q Y89_5085 PF00263 Y89_5085 Y89_5085 PF07655 Y89_5085 Y89_5086 PF06864 Y89_5086 Y89_5088 PF00437 Type II/IV secretion system protein Y89_5089 PF00482 Type II secretion system (T2SS), protein F Y89_5090 PF08805 PilS N terminal Y89_5091 PF00437 Type II/IV secretion system protein Y89_5092 PF04917 Y89_5092 Y89_5093 PF07419 PilM Y89_5096 PF12101 Y89_5096 Y89_5101 PF11679 Y89_5101 Y89_5107 PF00271 Helicase conserved C-terminal domain Y89_5107 PF04851 Type III restriction enzyme, res subunit Y89_5112 PF11072 Y89_5112 Y89_5114 PF12696 TraM recognition site of TraD and TraG Y89_5115 PF14348 Y89_5115 Y89_5116 PF13245 Part of AAA domain Y89_5116 PF13361 UvrD-like helicase C-terminal domain Y89_5119 PF09686 Y89_5119 Y89_5120 PF11660 Y89_5120 Y89_5121 PF11190 Y89_5121 Y89_5122 PF11990 Y89_5122 Y89_5123 PF11444 Y89_5123 Y89_5124 PF11920 Y89_5124 Y89_5127 PF11130 Y89_5127 Y89_5129 PF13462 Thioredoxin Y89_5133 PF06834 Y89_5133 Y89_5136 PF07916 Y89_5136 Y89_5138 PF03693 Uncharacterised protein family (UPF0156) Y89_5139 PF05016 Plasmid stabilisation system protein Y89_5142 PF01527 Transposase Y89_5143 PF05717 Y89_5143 Y89_5144 PF03050 Y89_5144 Y89_5144 PF13005 Y89_5144 Y89_5144 PF13007 Y89_5144 Y89_5144 PF13817 Y89_5144 Y89_5146 PF07514 Putative helicase Y89_5146 PF07515 Protein of unknown function (DUF1528) Y89_5147 PF00589 Phage integrase family Y89_5147 PF02899 Phage integrase, N-terminal SAM-like domain Y89_5148 PF00004 ATPase family associated with various cellular activities (AAA) Y89_5148 PF02861 Clp amino terminal domain Y89_5148 PF07724 AAA domain (Cdc48 subfamily) Y89_5148 PF10431 C-terminal, D2-small domain, of ClpB protein Y89_5149 PF02578 Multi-copper polyphenol oxidoreductase laccase Y89_5150 PF00849 RNA pseudouridylate synthase Y89_5150 PF01479 S4 domain Y89_5151 PF13525 Outer membrane lipoprotein Y89_5153 PF00512 His Kinase A (phospho-acceptor) domain Y89_5153 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5154 PF00072 Response regulator receiver domain Y89_5154 PF00158 Sigma-54 interaction domain Y89_5154 PF02954 Bacterial regulatory protein, Fis family Y89_5155 PF01266 FAD dependent oxidoreductase Y89_5156 PF07963 Prokaryotic N-terminal methylation motif Y89_5156 PF12019 Type II transport protein GspH Y89_5157 PF07963 Prokaryotic N-terminal methylation motif Y89_5157 PF12019 Type II transport protein GspH Y89_5158 PF07963 Prokaryotic N-terminal methylation motif Y89_5159 PF07963 Prokaryotic N-terminal methylation motif Y89_5160 PF14341 Y89_5160 Y89_5161 PF05567 Neisseria PilC beta-propeller domain Y89_5162 PF14481 Type 4 fimbrial biogenesis protein PilY2 Y89_5163 PF07963 Prokaryotic N-terminal methylation motif Y89_5163 PF16732 Y89_5163 Y89_5164 PF02401 LytB protein Y89_5165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y89_5166 PF01252 Y89_5166 Y89_5167 PF00133 tRNA synthetases class I (I, L, M and V) Y89_5167 PF06827 Zinc finger found in FPG and IleRS Y89_5167 PF08264 Anticodon-binding domain of tRNA Y89_5168 PF01687 Riboflavin kinase Y89_5168 PF06574 FAD synthetase Y89_5169 PF03023 Y89_5169 Y89_5170 PF01649 Ribosomal protein S20 Y89_5171 PF05981 Y89_5171 Y89_5172 PF00696 Amino acid kinase family Y89_5172 PF01472 PUA domain Y89_5173 PF01018 GTP1/OBG Y89_5173 PF01926 50S ribosome-binding GTPase Y89_5174 PF01016 Ribosomal L27 protein Y89_5175 PF00829 Ribosomal prokaryotic L21 protein Y89_5176 PF00348 Polyprenyl synthetase Y89_5178 PF00034 Cytochrome c Y89_5178 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_5179 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y89_5179 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Y89_5181 PF03350 Y89_5181 Y89_5183 PF05362 Lon protease (S16) C-terminal proteolytic domain Y89_5183 PF13654 AAA domain Y89_5184 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y89_5185 PF11220 Y89_5185 Y89_5186 PF13387 Y89_5186 Y89_5187 PF08719 Domain of unknown function (DUF1768) Y89_5188 PF00158 Sigma-54 interaction domain Y89_5188 PF06956 Y89_5188 Y89_5189 PF01145 SPFH domain / Band 7 family Y89_5190 PF01139 tRNA-splicing ligase RtcB Y89_5191 PF10127 Y89_5191 Y89_5192 PF01137 RNA 3'-terminal phosphate cyclase Y89_5192 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain Y89_5194 PF00034 Cytochrome c Y89_5194 PF03150 Di-haem cytochrome c peroxidase Y89_5195 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y89_5195 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Y89_5196 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y89_5198 PF16576 Y89_5198 Y89_5199 PF02321 Outer membrane efflux protein Y89_5200 PF02687 Y89_5200 Y89_5200 PF12704 MacB-like periplasmic core domain Y89_5201 PF00005 ABC transporter Y89_5202 PF00005 ABC transporter Y89_5202 PF12848 ABC transporter Y89_5205 PF02321 Outer membrane efflux protein Y89_5206 PF00873 AcrB/AcrD/AcrF family Y89_5207 PF16576 Y89_5207 Y89_5209 PF00563 EAL domain Y89_5209 PF00990 GGDEF domain Y89_5209 PF08447 PAS fold Y89_5209 PF13188 PAS domain Y89_5209 PF13426 PAS domain Y89_5210 PF00464 Serine hydroxymethyltransferase Y89_5212 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y89_5212 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y89_5213 PF04328 Y89_5213 Y89_5214 PF02554 Y89_5214 Y89_5214 PF13722 Y89_5214 Y89_5215 PF11220 Y89_5215 Y89_5216 PF07238 PilZ domain Y89_5217 PF13481 AAA domain Y89_5217 PF13541 Subunit ChlI of Mg-chelatase Y89_5218 PF05425 Y89_5218 Y89_5219 PF04325 Protein of unknown function (DUF465) Y89_5220 PF12796 Ankyrin repeats (3 copies) Y89_5221 PF00199 Catalase Y89_5221 PF06628 Catalase-related immune-responsive Y89_5222 PF01741 Large-conductance mechanosensitive channel, MscL Y89_5223 PF00175 Oxidoreductase NAD-binding domain Y89_5223 PF00970 Oxidoreductase FAD-binding domain Y89_5224 PF03480 Bacterial extracellular solute-binding protein, family 7 Y89_5225 PF05175 Methyltransferase small domain Y89_5226 PF12804 MobA-like NTP transferase domain Y89_5227 PF02625 XdhC and CoxI family Y89_5227 PF13478 XdhC Rossmann domain Y89_5228 PF00034 Cytochrome c Y89_5228 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_5229 PF01799 [2Fe-2S] binding domain Y89_5229 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Y89_5230 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Y89_5231 PF05977 Transmembrane secretion effector Y89_5233 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y89_5233 PF08479 POTRA domain, ShlB-type Y89_5234 PF05860 haemagglutination activity domain Y89_5235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_5235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_5236 PF05175 Methyltransferase small domain Y89_5236 PF08468 Methyltransferase small domain N-terminal Y89_5237 PF00324 Amino acid permease Y89_5238 PF01169 Y89_5238 Y89_5239 PF07366 SnoaL-like polyketide cyclase Y89_5240 PF01370 NAD dependent epimerase/dehydratase family Y89_5241 PF01435 Peptidase family M48 Y89_5242 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_5242 PF00672 HAMP domain Y89_5242 PF02743 Cache domain Y89_5243 PF02586 Uncharacterised ACR, COG2135 Y89_5244 PF02308 Y89_5244 Y89_5245 PF09413 Domain of unknown function (DUF2007) Y89_5246 PF14255 Y89_5246 Y89_5247 PF01553 Acyltransferase Y89_5250 PF03923 Y89_5250 Y89_5251 PF06039 Y89_5251 Y89_5252 PF06983 3-demethylubiquinone-9 3-methyltransferase Y89_5256 PF00156 Phosphoribosyl transferase domain Y89_5257 PF14681 Uracil phosphoribosyltransferase Y89_5258 PF00860 Permease family Y89_5259 PF05229 Y89_5259 Y89_5260 PF05229 Y89_5260 Y89_5261 PF05229 Y89_5261 Y89_5262 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y89_5263 PF00577 Outer membrane usher protein Y89_5263 PF13953 PapC C-terminal domain Y89_5264 PF05229 Y89_5264 Y89_5265 PF07690 Major Facilitator Superfamily Y89_5266 PF00762 Ferrochelatase Y89_5267 PF01370 NAD dependent epimerase/dehydratase family Y89_5267 PF08338 Domain of unknown function (DUF1731) Y89_5268 PF01593 Flavin containing amine oxidoreductase Y89_5268 PF13450 NAD(P)-binding Rossmann-like domain Y89_5269 PF04463 Y89_5269 Y89_5269 PF08349 Y89_5269 Y89_5270 PF13411 MerR HTH family regulatory protein Y89_5271 PF00875 DNA photolyase Y89_5271 PF03441 FAD binding domain of DNA photolyase Y89_5272 PF09411 Lipid A 3-O-deacylase (PagL) Y89_5273 PF01177 Asp/Glu/Hydantoin racemase Y89_5274 PF00899 ThiF family Y89_5275 PF05175 Methyltransferase small domain Y89_5276 PF00472 RF-1 domain Y89_5276 PF03462 PCRF domain Y89_5277 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Y89_5277 PF01488 Shikimate / quinate 5-dehydrogenase Y89_5277 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Y89_5278 PF13432 Tetratricopeptide repeat Y89_5278 PF14559 Tetratricopeptide repeat Y89_5279 PF03550 Outer membrane lipoprotein LolB Y89_5280 PF00288 GHMP kinases N terminal domain Y89_5280 PF08544 GHMP kinases C terminal Y89_5282 PF01386 Ribosomal L25p family Y89_5282 PF14693 Ribosomal protein TL5, C-terminal domain Y89_5283 PF01195 Peptidyl-tRNA hydrolase Y89_5284 PF01926 50S ribosome-binding GTPase Y89_5284 PF06071 Protein of unknown function (DUF933) Y89_5285 PF01381 Helix-turn-helix Y89_5286 PF00593 TonB dependent receptor Y89_5286 PF07715 TonB-dependent Receptor Plug Domain Y89_5287 PF00484 Carbonic anhydrase Y89_5288 PF03577 Y89_5288 Y89_5289 PF00583 Acetyltransferase (GNAT) family Y89_5298 PF13343 Bacterial extracellular solute-binding protein Y89_5299 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5300 PF02470 Y89_5300 Y89_5301 PF04403 Y89_5301 Y89_5302 PF04403 Y89_5302 Y89_5303 PF01794 Y89_5303 Y89_5304 PF00174 Oxidoreductase molybdopterin binding domain Y89_5305 PF01066 CDP-alcohol phosphatidyltransferase Y89_5306 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Y89_5306 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain Y89_5307 PF10369 Small subunit of acetolactate synthase Y89_5307 PF13710 ACT domain Y89_5308 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_5308 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_5308 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_5309 PF13511 Y89_5309 Y89_5310 PF04287 tRNA pseudouridine synthase C Y89_5312 PF00905 Penicillin binding protein transpeptidase domain Y89_5312 PF00912 Transglycosylase Y89_5312 PF14814 Bifunctional transglycosylase second domain Y89_5313 PF01636 Phosphotransferase enzyme family Y89_5313 PF13671 AAA domain Y89_5314 PF00805 Pentapeptide repeats (8 copies) Y89_5315 PF04994 TfoX C-terminal domain Y89_5316 PF00027 Cyclic nucleotide-binding domain Y89_5317 PF04187 Protein of unknown function, DUF399 Y89_5318 PF00005 ABC transporter Y89_5319 PF01032 FecCD transport family Y89_5320 PF01497 Periplasmic binding protein Y89_5321 PF05171 Haemin-degrading HemS Y89_5322 PF00593 TonB dependent receptor Y89_5322 PF07715 TonB-dependent Receptor Plug Domain Y89_5323 PF00355 Rieske [2Fe-2S] domain Y89_5324 PF13590 Domain of unknown function (DUF4136) Y89_5325 PF14248 Y89_5325 Y89_5326 PF04214 Y89_5326 Y89_5327 PF00155 Aminotransferase class I and II Y89_5328 PF02567 Phenazine biosynthesis-like protein Y89_5329 PF04228 Y89_5329 Y89_5331 PF00860 Permease family Y89_5332 PF05958 tRNA (Uracil-5-)-methyltransferase Y89_5333 PF03749 Sugar fermentation stimulation protein Y89_5334 PF00155 Aminotransferase class I and II Y89_5335 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y89_5336 PF00749 tRNA synthetases class I (E and Q), catalytic domain Y89_5338 PF00512 His Kinase A (phospho-acceptor) domain Y89_5338 PF00989 PAS fold Y89_5338 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5339 PF00072 Response regulator receiver domain Y89_5339 PF00158 Sigma-54 interaction domain Y89_5340 PF01743 Poly A polymerase head domain Y89_5340 PF12626 Polymerase A arginine-rich C-terminus Y89_5340 PF12627 Probable RNA and SrmB- binding site of polymerase A Y89_5341 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Y89_5342 PF02548 Ketopantoate hydroxymethyltransferase Y89_5343 PF02569 Pantoate-beta-alanine ligase Y89_5344 PF02261 Aspartate decarboxylase Y89_5345 PF00342 Phosphoglucose isomerase Y89_5346 PF00501 AMP-binding enzyme Y89_5346 PF13193 AMP-binding enzyme C-terminal domain Y89_5346 PF16177 Y89_5346 Y89_5347 PF09995 Y89_5347 Y89_5348 PF00691 OmpA family Y89_5348 PF05359 Y89_5348 Y89_5349 PF11006 Y89_5349 Y89_5350 PF11006 Y89_5350 Y89_5351 PF05532 CsbD-like Y89_5352 PF04972 BON domain Y89_5353 PF00013 KH domain Y89_5353 PF00575 S1 RNA binding domain Y89_5353 PF01138 3' exoribonuclease family, domain 1 Y89_5353 PF03725 3' exoribonuclease family, domain 2 Y89_5353 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Y89_5354 PF00312 Ribosomal protein S15 Y89_5355 PF01509 TruB family pseudouridylate synthase (N terminal domain) Y89_5355 PF09157 Pseudouridine synthase II TruB, C-terminal Y89_5355 PF16198 Y89_5355 Y89_5356 PF02033 Ribosome-binding factor A Y89_5357 PF00009 Elongation factor Tu GTP binding domain Y89_5357 PF04760 Translation initiation factor IF-2, N-terminal region Y89_5357 PF08364 Y89_5357 Y89_5357 PF11987 Translation-initiation factor 2 Y89_5358 PF00575 S1 RNA binding domain Y89_5358 PF08529 NusA N-terminal domain Y89_5358 PF13184 NusA-like KH domain Y89_5358 PF14520 Helix-hairpin-helix domain Y89_5359 PF02576 Uncharacterised BCR, YhbC family COG0779 Y89_5359 PF17384 Y89_5359 Y89_5360 PF00121 Triosephosphate isomerase Y89_5361 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Y89_5361 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Y89_5361 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Y89_5361 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Y89_5362 PF00809 Pterin binding enzyme Y89_5363 PF00004 ATPase family associated with various cellular activities (AAA) Y89_5363 PF01434 Peptidase family M41 Y89_5363 PF06480 FtsH Extracellular Y89_5364 PF01728 FtsJ-like methyltransferase Y89_5365 PF01985 CRS1 / YhbY (CRM) domain Y89_5367 PF01272 Transcription elongation factor, GreA/GreB, C-term Y89_5367 PF03449 Transcription elongation factor, N-terminal Y89_5368 PF02142 MGS-like domain Y89_5368 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_5368 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Y89_5369 PF01810 Y89_5369 Y89_5370 PF00117 Glutamine amidotransferase class-I Y89_5370 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Y89_5371 PF01113 Dihydrodipicolinate reductase, N-terminus Y89_5371 PF05173 Dihydrodipicolinate reductase, C-terminus Y89_5372 PF00226 DnaJ domain Y89_5372 PF00684 DnaJ central domain Y89_5372 PF01556 DnaJ C terminal domain Y89_5373 PF00012 Hsp70 protein Y89_5374 PF01025 GrpE Y89_5375 PF02463 RecF/RecN/SMC N terminal domain Y89_5376 PF01475 Ferric uptake regulator family Y89_5377 PF04355 SmpA / OmlA family Y89_5378 PF03658 RnfH family Ubiquitin Y89_5379 PF03364 Polyketide cyclase / dehydrase and lipid transport Y89_5380 PF01668 SmpB protein Y89_5381 PF00392 Bacterial regulatory proteins, gntR family Y89_5381 PF07729 FCD domain Y89_5382 PF02652 Y89_5382 Y89_5383 PF01070 FMN-dependent dehydrogenase Y89_5384 PF01565 FAD binding domain Y89_5384 PF02754 Y89_5384 Y89_5384 PF02913 FAD linked oxidases, C-terminal domain Y89_5384 PF12838 4Fe-4S dicluster domain Y89_5385 PF02675 S-adenosylmethionine decarboxylase Y89_5386 PF01564 Spermine/spermidine synthase Y89_5386 PF17284 Y89_5386 Y89_5388 PF00072 Response regulator receiver domain Y89_5388 PF00486 Transcriptional regulatory protein, C terminal Y89_5389 PF00512 His Kinase A (phospho-acceptor) domain Y89_5389 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5390 PF00376 MerR family regulatory protein Y89_5390 PF09278 MerR, DNA binding Y89_5391 PF06042 Bacterial protein of unknown function (DUF925) Y89_5392 PF00892 EamA-like transporter family Y89_5393 PF01163 RIO1 family Y89_5394 PF00072 Response regulator receiver domain Y89_5394 PF13487 HD domain Y89_5396 PF00892 EamA-like transporter family Y89_5397 PF01037 AsnC family Y89_5397 PF13412 Winged helix-turn-helix DNA-binding Y89_5398 PF00108 Thiolase, N-terminal domain Y89_5398 PF02803 Thiolase, C-terminal domain Y89_5399 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_5400 PF12625 Y89_5400 Y89_5400 PF12833 Helix-turn-helix domain Y89_5401 PF01575 MaoC like domain Y89_5402 PF12643 Y89_5402 Y89_5403 PF13489 Methyltransferase domain Y89_5404 PF13590 Domain of unknown function (DUF4136) Y89_5405 PF03009 Glycerophosphoryl diester phosphodiesterase family Y89_5406 PF13590 Domain of unknown function (DUF4136) Y89_5407 PF00583 Acetyltransferase (GNAT) family Y89_5408 PF02635 DsrE/DsrF-like family Y89_5409 PF01597 Glycine cleavage H-protein Y89_5410 PF04229 GrpB protein Y89_5412 PF08241 Methyltransferase domain Y89_5414 PF00795 Carbon-nitrogen hydrolase Y89_5415 PF13649 Methyltransferase domain Y89_5416 PF13520 Amino acid permease Y89_5417 PF00202 Aminotransferase class-III Y89_5418 PF00196 Bacterial regulatory proteins, luxR family Y89_5419 PF00009 Elongation factor Tu GTP binding domain Y89_5419 PF09106 Elongation factor SelB, winged helix Y89_5419 PF09107 Elongation factor SelB, winged helix Y89_5420 PF03841 L-seryl-tRNA selenium transferase Y89_5420 PF12390 Y89_5420 Y89_5421 PF04216 Protein involved in formate dehydrogenase formation Y89_5422 PF01292 Prokaryotic cytochrome b561 Y89_5423 PF09163 Formate dehydrogenase N, transmembrane Y89_5423 PF12800 4Fe-4S binding domain Y89_5423 PF13247 4Fe-4S dicluster domain Y89_5426 PF00561 alpha/beta hydrolase fold Y89_5427 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_5427 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_5428 PF04657 Y89_5428 Y89_5429 PF08874 Y89_5429 Y89_5430 PF03692 Y89_5430 Y89_5431 PF02366 Y89_5431 Y89_5432 PF00535 Glycosyl transferase family 2 Y89_5437 PF13550 Y89_5437 Y89_5439 PF09356 Y89_5439 Y89_5439 PF09931 Y89_5439 Y89_5443 PF06791 Y89_5443 Y89_5443 PF09718 Y89_5443 Y89_5449 PF07030 Y89_5449 Y89_5455 PF05069 Y89_5455 Y89_5456 PF04233 Y89_5456 Y89_5457 PF06074 Y89_5457 Y89_5459 PF11985 Y89_5459 Y89_5464 PF01464 Transglycosylase SLT domain Y89_5466 PF13272 Y89_5466 Y89_5469 PF01381 Helix-turn-helix Y89_5475 PF00665 Integrase core domain Y89_5476 PF13401 AAA domain Y89_5481 PF11363 Y89_5481 Y89_5482 PF10979 Y89_5482 Y89_5485 PF06252 Y89_5485 Y89_5486 PF08765 Mor transcription activator family Y89_5488 PF04138 Y89_5488 Y89_5489 PF01554 MatE Y89_5491 PF01895 PhoU domain Y89_5491 PF02690 Y89_5491 Y89_5494 PF00122 E1-E2 ATPase Y89_5494 PF00689 Cation transporting ATPase, C-terminus Y89_5494 PF00690 Cation transporter/ATPase, N-terminus Y89_5494 PF00702 haloacid dehalogenase-like hydrolase Y89_5496 PF00797 N-acetyltransferase Y89_5497 PF09980 Y89_5497 Y89_5498 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y89_5498 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_5499 PF03061 Thioesterase superfamily Y89_5500 PF00440 Bacterial regulatory proteins, tetR family Y89_5501 PF00106 short chain dehydrogenase Y89_5502 PF03006 Y89_5502 Y89_5503 PF00892 EamA-like transporter family Y89_5504 PF10100 Y89_5504 Y89_5505 PF03059 Nicotianamine synthase protein Y89_5506 PF00593 TonB dependent receptor Y89_5506 PF07715 TonB-dependent Receptor Plug Domain Y89_5507 PF07786 Y89_5507 Y89_5508 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Y89_5509 PF01253 Translation initiation factor SUI1 Y89_5510 PF00293 NUDIX domain Y89_5511 PF10095 Y89_5511 Y89_5513 PF00072 Response regulator receiver domain Y89_5513 PF00990 GGDEF domain Y89_5514 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_5515 PF02683 Y89_5515 Y89_5515 PF11412 Disulphide bond corrector protein DsbC Y89_5515 PF13899 Thioredoxin-like Y89_5516 PF01220 Dehydroquinase class II Y89_5517 PF00364 Biotin-requiring enzyme Y89_5518 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Y89_5518 PF02785 Biotin carboxylase C-terminal domain Y89_5518 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_5519 PF06325 Ribosomal protein L11 methyltransferase (PrmA) Y89_5520 PF11906 Y89_5520 Y89_5520 PF13719 Y89_5520 Y89_5521 PF01207 Dihydrouridine synthase (Dus) Y89_5522 PF02954 Bacterial regulatory protein, Fis family Y89_5523 PF01808 AICARFT/IMPCHase bienzyme Y89_5523 PF02142 MGS-like domain Y89_5524 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Y89_5524 PF02843 Phosphoribosylglycinamide synthetase, C domain Y89_5524 PF02844 Phosphoribosylglycinamide synthetase, N domain Y89_5525 PF00072 Response regulator receiver domain Y89_5525 PF00512 His Kinase A (phospho-acceptor) domain Y89_5525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5525 PF07695 Y89_5525 Y89_5525 PF07696 7TMR-DISM extracellular 2 Y89_5526 PF01914 Y89_5526 Y89_5527 PF13433 Periplasmic binding protein domain Y89_5528 PF02653 Y89_5528 Y89_5529 PF02653 Y89_5529 Y89_5530 PF00005 ABC transporter Y89_5530 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y89_5531 PF00005 ABC transporter Y89_5532 PF00583 Acetyltransferase (GNAT) family Y89_5533 PF01774 UreD urease accessory protein Y89_5534 PF00547 Urease, gamma subunit Y89_5535 PF13420 Acetyltransferase (GNAT) domain Y89_5536 PF00699 Urease beta subunit Y89_5537 PF00449 Urease alpha-subunit, N-terminal domain Y89_5537 PF01979 Amidohydrolase family Y89_5539 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y89_5541 PF13714 Phosphoenolpyruvate phosphomutase Y89_5542 PF00012 Hsp70 protein Y89_5543 PF07769 Y89_5543 Y89_5544 PF03473 MOSC domain Y89_5545 PF04355 SmpA / OmlA family Y89_5546 PF07498 Rho termination factor, N-terminal domain Y89_5547 PF13411 MerR HTH family regulatory protein Y89_5547 PF14526 Integron-associated effector binding protein Y89_5548 PF05170 Y89_5548 Y89_5549 PF00210 Ferritin-like domain Y89_5551 PF00174 Oxidoreductase molybdopterin binding domain Y89_5552 PF01292 Prokaryotic cytochrome b561 Y89_5554 PF00072 Response regulator receiver domain Y89_5554 PF00486 Transcriptional regulatory protein, C terminal Y89_5555 PF00512 His Kinase A (phospho-acceptor) domain Y89_5555 PF00672 HAMP domain Y89_5555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5556 PF00083 Sugar (and other) transporter Y89_5556 PF07690 Major Facilitator Superfamily Y89_5557 PF00487 Y89_5557 Y89_5558 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_5558 PF00175 Oxidoreductase NAD-binding domain Y89_5558 PF00970 Oxidoreductase FAD-binding domain Y89_5559 PF00440 Bacterial regulatory proteins, tetR family Y89_5560 PF02814 UreE urease accessory protein, N-terminal domain Y89_5560 PF05194 UreE urease accessory protein, C-terminal domain Y89_5561 PF01730 UreF Y89_5562 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y89_5563 PF04955 Y89_5563 Y89_5564 PF04773 FecR protein Y89_5564 PF16220 Y89_5564 Y89_5564 PF16344 Y89_5564 Y89_5565 PF04542 Sigma-70 region 2 Y89_5565 PF08281 Sigma-70, region 4 Y89_5566 PF00593 TonB dependent receptor Y89_5566 PF07715 TonB-dependent Receptor Plug Domain Y89_5567 PF03573 outer membrane porin, OprD family Y89_5568 PF00171 Aldehyde dehydrogenase family Y89_5571 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_5571 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_5571 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_5572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5572 PF03466 LysR substrate binding domain Y89_5573 PF07690 Major Facilitator Superfamily Y89_5574 PF00355 Rieske [2Fe-2S] domain Y89_5575 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_5576 PF00392 Bacterial regulatory proteins, gntR family Y89_5576 PF07729 FCD domain Y89_5577 PF00106 short chain dehydrogenase Y89_5578 PF02423 Ornithine cyclodeaminase/mu-crystallin family Y89_5579 PF00005 ABC transporter Y89_5580 PF00005 ABC transporter Y89_5580 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y89_5581 PF02653 Y89_5581 Y89_5581 PF11862 Y89_5581 Y89_5582 PF02653 Y89_5582 Y89_5583 PF13458 Periplasmic binding protein Y89_5584 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5584 PF03466 LysR substrate binding domain Y89_5585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_5585 PF00672 HAMP domain Y89_5585 PF12729 Y89_5585 Y89_5587 PF01467 Cytidylyltransferase Y89_5588 PF00857 Isochorismatase family Y89_5589 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Y89_5590 PF02540 NAD synthase Y89_5591 PF00657 GDSL-like Lipase/Acylhydrolase Y89_5592 PF00127 Copper binding proteins, plastocyanin/azurin family Y89_5593 PF03641 Possible lysine decarboxylase Y89_5594 PF01476 LysM domain Y89_5594 PF01551 Peptidase family M23 Y89_5595 PF00924 Mechanosensitive ion channel Y89_5596 PF01841 Transglutaminase-like superfamily Y89_5596 PF08379 Y89_5596 Y89_5597 PF04168 Y89_5597 Y89_5597 PF14403 Y89_5597 Y89_5598 PF04055 Radical SAM superfamily Y89_5598 PF08497 Y89_5598 Y89_5598 PF11842 Y89_5598 Y89_5599 PF00990 GGDEF domain Y89_5599 PF07695 Y89_5599 Y89_5599 PF07696 7TMR-DISM extracellular 2 Y89_5600 PF00842 Alanine racemase, C-terminal domain Y89_5600 PF01168 Alanine racemase, N-terminal domain Y89_5601 PF00772 DnaB-like helicase N terminal domain Y89_5601 PF03796 DnaB-like helicase C terminal domain Y89_5602 PF01281 Ribosomal protein L9, N-terminal domain Y89_5602 PF03948 Ribosomal protein L9, C-terminal domain Y89_5604 PF01084 Ribosomal protein S18 Y89_5605 PF01250 Ribosomal protein S6 Y89_5606 PF00588 SpoU rRNA Methylase family Y89_5606 PF08032 RNA 2'-O ribose methyltransferase substrate binding Y89_5607 PF00575 S1 RNA binding domain Y89_5607 PF00773 RNB domain Y89_5607 PF08206 Ribonuclease B OB domain Y89_5607 PF08461 Ribonuclease R winged-helix domain Y89_5608 PF00709 Adenylosuccinate synthetase Y89_5609 PF13393 Histidyl-tRNA synthetase Y89_5610 PF09838 Y89_5610 Y89_5611 PF01145 SPFH domain / Band 7 family Y89_5612 PF01145 SPFH domain / Band 7 family Y89_5612 PF12221 Y89_5612 Y89_5613 PF01926 50S ribosome-binding GTPase Y89_5613 PF13167 Y89_5613 Y89_5613 PF16360 Y89_5613 Y89_5614 PF17209 Y89_5614 Y89_5615 PF01715 IPP transferase Y89_5616 PF01119 DNA mismatch repair protein, C-terminal domain Y89_5616 PF08676 MutL C terminal dimerisation domain Y89_5616 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5617 PF01476 LysM domain Y89_5617 PF01520 N-acetylmuramoyl-L-alanine amidase Y89_5617 PF11741 AMIN domain Y89_5618 PF02367 Uncharacterised P-loop hydrolase UPF0079 Y89_5619 PF01256 Carbohydrate kinase Y89_5619 PF03853 YjeF-related protein N-terminus Y89_5620 PF08331 Y89_5620 Y89_5620 PF13484 Y89_5620 Y89_5621 PF00929 Exonuclease Y89_5622 PF03193 Protein of unknown function, DUF258 Y89_5623 PF00691 OmpA family Y89_5623 PF13677 Y89_5623 Y89_5624 PF01618 Y89_5624 Y89_5625 PF08668 HDOD domain Y89_5626 PF00581 Rhodanese-like domain Y89_5627 PF02666 Y89_5627 Y89_5629 PF00563 EAL domain Y89_5629 PF00989 PAS fold Y89_5629 PF00990 GGDEF domain Y89_5630 PF12710 haloacid dehalogenase-like hydrolase Y89_5630 PF13740 ACT domain Y89_5631 PF10144 Y89_5631 Y89_5632 PF04307 Y89_5632 Y89_5633 PF03886 Protein of unknown function (DUF330) Y89_5634 PF00521 DNA gyrase/topoisomerase IV, subunit A Y89_5634 PF03989 DNA gyrase C-terminal domain, beta-propeller Y89_5635 PF13975 Y89_5635 Y89_5636 PF13449 Esterase-like activity of phytase Y89_5637 PF00204 DNA gyrase B Y89_5637 PF00986 DNA gyrase B subunit, carboxyl terminus Y89_5637 PF01751 Toprim domain Y89_5637 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5638 PF05728 Uncharacterised protein family (UPF0227) Y89_5639 PF00149 Calcineurin-like phosphoesterase Y89_5640 PF06853 Y89_5640 Y89_5641 PF00293 NUDIX domain Y89_5642 PF11738 Protein of unknown function (DUF3298) Y89_5643 PF01964 ThiC family Y89_5643 PF13667 ThiC-associated domain Y89_5644 PF02321 Outer membrane efflux protein Y89_5645 PF02525 Flavodoxin-like fold Y89_5646 PF00155 Aminotransferase class I and II Y89_5647 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_5647 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_5647 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_5648 PF13380 CoA binding domain Y89_5648 PF13549 ATP-grasp domain Y89_5648 PF13607 Succinyl-CoA ligase like flavodoxin domain Y89_5649 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_5649 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_5649 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_5650 PF00378 Enoyl-CoA hydratase/isomerase family Y89_5651 PF00324 Amino acid permease Y89_5652 PF00072 Response regulator receiver domain Y89_5652 PF00512 His Kinase A (phospho-acceptor) domain Y89_5652 PF01627 Hpt domain Y89_5652 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5652 PF17149 Y89_5652 Y89_5653 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_5654 PF00072 Response regulator receiver domain Y89_5654 PF00486 Transcriptional regulatory protein, C terminal Y89_5655 PF00440 Bacterial regulatory proteins, tetR family Y89_5655 PF13977 Bacterial transcriptional repressor Y89_5656 PF13416 Bacterial extracellular solute-binding protein Y89_5657 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_5657 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_5658 PF01381 Helix-turn-helix Y89_5658 PF07883 Cupin domain Y89_5659 PF00534 Glycosyl transferases group 1 Y89_5659 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Y89_5660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5660 PF03466 LysR substrate binding domain Y89_5661 PF00893 Small Multidrug Resistance protein Y89_5663 PF00248 Aldo/keto reductase family Y89_5665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_5665 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_5666 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_5666 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_5666 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_5667 PF00294 pfkB family carbohydrate kinase Y89_5667 PF01467 Cytidylyltransferase Y89_5668 PF00005 ABC transporter Y89_5668 PF00664 ABC transporter transmembrane region Y89_5670 PF04932 Y89_5670 Y89_5671 PF00535 Glycosyl transferase family 2 Y89_5672 PF13524 Glycosyl transferases group 1 Y89_5675 PF07395 Y89_5675 Y89_5676 PF00534 Glycosyl transferases group 1 Y89_5676 PF13439 Glycosyltransferase Family 4 Y89_5677 PF02543 Carbamoyltransferase Y89_5677 PF16861 Y89_5677 Y89_5678 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family Y89_5679 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family Y89_5680 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family Y89_5681 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family Y89_5682 PF00534 Glycosyl transferases group 1 Y89_5683 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Y89_5684 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Y89_5685 PF01063 Aminotransferase class IV Y89_5686 PF03710 Glutamate-ammonia ligase adenylyltransferase Y89_5686 PF08335 GlnD PII-uridylyltransferase Y89_5687 PF00456 Transketolase, thiamine diphosphate binding domain Y89_5688 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Y89_5688 PF00364 Biotin-requiring enzyme Y89_5688 PF02817 e3 binding domain Y89_5689 PF00563 EAL domain Y89_5689 PF00990 GGDEF domain Y89_5689 PF01590 GAF domain Y89_5689 PF13426 PAS domain Y89_5690 PF01625 Peptide methionine sulfoxide reductase Y89_5691 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ Y89_5692 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_5692 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_5692 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_5692 PF12418 Y89_5692 Y89_5692 PF12806 Y89_5692 Y89_5693 PF00999 Sodium/hydrogen exchanger family Y89_5693 PF02080 TrkA-C domain Y89_5693 PF03471 Transporter associated domain Y89_5694 PF00924 Mechanosensitive ion channel Y89_5694 PF12794 Y89_5694 Y89_5694 PF12795 Y89_5694 Y89_5695 PF02696 Y89_5695 Y89_5696 PF01925 Y89_5696 Y89_5697 PF01053 Cys/Met metabolism PLP-dependent enzyme Y89_5698 PF14539 Domain of unknown function (DUF4442) Y89_5699 PF00582 Universal stress protein family Y89_5700 PF13614 AAA domain Y89_5701 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5701 PF03466 LysR substrate binding domain Y89_5702 PF07690 Major Facilitator Superfamily Y89_5703 PF00106 short chain dehydrogenase Y89_5704 PF12625 Y89_5704 Y89_5704 PF12833 Helix-turn-helix domain Y89_5706 PF01208 Uroporphyrinogen decarboxylase (URO-D) Y89_5707 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_5707 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Y89_5708 PF00310 Glutamine amidotransferases class-II Y89_5708 PF01493 GXGXG motif Y89_5708 PF01645 Conserved region in glutamate synthase Y89_5708 PF04898 Glutamate synthase central domain Y89_5709 PF05036 Sporulation related domain Y89_5709 PF13401 AAA domain Y89_5710 PF01761 3-dehydroquinate synthase Y89_5711 PF01202 Shikimate kinase Y89_5712 PF00263 Y89_5712 Y89_5712 PF03958 Bacterial type II/III secretion system short domain Y89_5712 PF07660 Secretin and TonB N terminus short domain Y89_5712 PF11741 AMIN domain Y89_5713 PF04351 Pilus assembly protein, PilP Y89_5714 PF04350 Pilus assembly protein, PilO Y89_5716 PF11104 Type IV pilus assembly protein PilM; Y89_5717 PF00905 Penicillin binding protein transpeptidase domain Y89_5717 PF00912 Transglycosylase Y89_5717 PF17092 Y89_5717 Y89_5718 PF00390 Malic enzyme, N-terminal domain Y89_5718 PF03949 Malic enzyme, NAD binding domain Y89_5719 PF01435 Peptidase family M48 Y89_5720 PF00565 Staphylococcal nuclease homologue Y89_5721 PF01197 Ribosomal protein L31 Y89_5722 PF00270 DEAD/DEAH box helicase Y89_5722 PF00271 Helicase conserved C-terminal domain Y89_5723 PF00750 tRNA synthetases class I (R) Y89_5723 PF03485 Arginyl tRNA synthetase N terminal domain Y89_5723 PF05746 DALR anticodon binding domain Y89_5724 PF05036 Sporulation related domain Y89_5725 PF00227 Proteasome subunit Y89_5726 PF00004 ATPase family associated with various cellular activities (AAA) Y89_5726 PF07724 AAA domain (Cdc48 subfamily) Y89_5727 PF06155 Protein of unknown function (DUF971) Y89_5728 PF07167 Y89_5728 Y89_5729 PF00561 alpha/beta hydrolase fold Y89_5730 PF07167 Y89_5730 Y89_5731 PF00440 Bacterial regulatory proteins, tetR family Y89_5731 PF13972 Bacterial transcriptional repressor Y89_5732 PF05597 Y89_5732 Y89_5733 PF05597 Y89_5733 Y89_5734 PF09650 Y89_5734 Y89_5735 PF01209 ubiE/COQ5 methyltransferase family Y89_5736 PF02036 SCP-2 sterol transfer family Y89_5737 PF03109 Y89_5737 Y89_5738 PF01502 Phosphoribosyl-AMP cyclohydrolase Y89_5739 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Y89_5740 PF02416 mttA/Hcf106 family Y89_5741 PF02416 mttA/Hcf106 family Y89_5742 PF00902 Sec-independent protein translocase protein (TatC) Y89_5743 PF04452 RNA methyltransferase Y89_5744 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y89_5744 PF00672 HAMP domain Y89_5744 PF16591 Y89_5744 Y89_5745 PF03682 Y89_5745 Y89_5746 PF00005 ABC transporter Y89_5747 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5748 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_5749 PF00535 Glycosyl transferase family 2 Y89_5750 PF04349 Periplasmic glucan biosynthesis protein, MdoG Y89_5751 PF02580 D-Tyr-tRNA(Tyr) deacylase Y89_5752 PF00561 alpha/beta hydrolase fold Y89_5753 PF00293 NUDIX domain Y89_5754 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_5755 PF01042 Endoribonuclease L-PSP Y89_5756 PF01266 FAD dependent oxidoreductase Y89_5757 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5757 PF03466 LysR substrate binding domain Y89_5758 PF08238 Sel1 repeat Y89_5759 PF08238 Sel1 repeat Y89_5761 PF05954 Phage late control gene D protein (GPD) Y89_5762 PF05013 N-formylglutamate amidohydrolase Y89_5763 PF01979 Amidohydrolase family Y89_5764 PF00221 Aromatic amino acid lyase Y89_5766 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5767 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y89_5768 PF00324 Amino acid permease Y89_5769 PF00221 Aromatic amino acid lyase Y89_5770 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Y89_5771 PF01175 Urocanase Y89_5771 PF17391 Y89_5771 Y89_5771 PF17392 Y89_5771 Y89_5772 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein Y89_5773 PF00487 Y89_5773 Y89_5774 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y89_5775 PF05962 HutD Y89_5776 PF00392 Bacterial regulatory proteins, gntR family Y89_5776 PF07702 UTRA domain Y89_5777 PF01979 Amidohydrolase family Y89_5778 PF08212 Lipocalin-like domain Y89_5779 PF04355 SmpA / OmlA family Y89_5780 PF06041 Bacterial protein of unknown function (DUF924) Y89_5781 PF00316 Fructose-1-6-bisphosphatase Y89_5782 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_5783 PF00657 GDSL-like Lipase/Acylhydrolase Y89_5783 PF03797 Autotransporter beta-domain Y89_5784 PF13163 Y89_5784 Y89_5785 PF10101 Y89_5785 Y89_5786 PF13649 Methyltransferase domain Y89_5787 PF13411 MerR HTH family regulatory protein Y89_5788 PF00009 Elongation factor Tu GTP binding domain Y89_5788 PF00679 Elongation factor G C-terminus Y89_5788 PF03144 Elongation factor Tu domain 2 Y89_5789 PF02568 Thiamine biosynthesis protein (ThiI) Y89_5789 PF02926 THUMP domain Y89_5790 PF00120 Glutamine synthetase, catalytic domain Y89_5790 PF03951 Glutamine synthetase, beta-Grasp domain Y89_5792 PF00924 Mechanosensitive ion channel Y89_5793 PF13511 Y89_5793 Y89_5794 PF13511 Y89_5794 Y89_5795 PF00512 His Kinase A (phospho-acceptor) domain Y89_5795 PF00989 PAS fold Y89_5795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5796 PF00072 Response regulator receiver domain Y89_5796 PF00158 Sigma-54 interaction domain Y89_5796 PF02954 Bacterial regulatory protein, Fis family Y89_5799 PF00588 SpoU rRNA Methylase family Y89_5800 PF02556 Preprotein translocase subunit SecB Y89_5801 PF00462 Glutaredoxin Y89_5802 PF00581 Rhodanese-like domain Y89_5803 PF01676 Metalloenzyme superfamily Y89_5803 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Y89_5804 PF02517 CAAX protease self-immunity Y89_5805 PF01551 Peptidase family M23 Y89_5806 PF03572 Peptidase family S41 Y89_5806 PF13180 PDZ domain Y89_5807 PF04748 Divergent polysaccharide deacetylase Y89_5809 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_5810 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_5811 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_5812 PF00977 Histidine biosynthesis protein Y89_5813 PF00977 Histidine biosynthesis protein Y89_5814 PF09932 Y89_5814 Y89_5815 PF00117 Glutamine amidotransferase class-I Y89_5816 PF00475 Imidazoleglycerol-phosphate dehydratase Y89_5817 PF12568 Acetyltransferase (GNAT) domain Y89_5820 PF05170 Y89_5820 Y89_5821 PF00633 Helix-hairpin-helix motif Y89_5821 PF00730 HhH-GPD superfamily base excision DNA repair protein Y89_5821 PF14815 NUDIX domain Y89_5822 PF04362 Bacterial Fe(2+) trafficking Y89_5823 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y89_5823 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Y89_5824 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_5825 PF04367 Y89_5825 Y89_5826 PF00005 ABC transporter Y89_5827 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y89_5828 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5829 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5830 PF13679 Y89_5830 Y89_5831 PF01047 MarR family Y89_5832 PF02321 Outer membrane efflux protein Y89_5833 PF00529 HlyD family secretion protein Y89_5833 PF16576 Y89_5833 Y89_5834 PF07690 Major Facilitator Superfamily Y89_5836 PF05125 Y89_5836 Y89_5837 PF04606 Y89_5837 Y89_5839 PF06048 Y89_5839 Y89_5840 PF13362 Toprim domain Y89_5842 PF12728 Helix-turn-helix domain Y89_5845 PF12728 Helix-turn-helix domain Y89_5846 PF00589 Phage integrase family Y89_5847 PF16363 Y89_5847 Y89_5848 PF04321 RmlD substrate binding domain Y89_5849 PF00483 Nucleotidyl transferase Y89_5850 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Y89_5851 PF00512 His Kinase A (phospho-acceptor) domain Y89_5851 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5851 PF02743 Cache domain Y89_5852 PF00072 Response regulator receiver domain Y89_5852 PF00158 Sigma-54 interaction domain Y89_5852 PF02954 Bacterial regulatory protein, Fis family Y89_5853 PF03480 Bacterial extracellular solute-binding protein, family 7 Y89_5854 PF04290 Y89_5854 Y89_5855 PF06808 Y89_5855 Y89_5856 PF13520 Amino acid permease Y89_5857 PF02274 Amidinotransferase Y89_5858 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Y89_5858 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Y89_5859 PF00696 Amino acid kinase family Y89_5860 PF00109 Beta-ketoacyl synthase, N-terminal domain Y89_5860 PF02801 Beta-ketoacyl synthase, C-terminal domain Y89_5861 PF00459 Inositol monophosphatase family Y89_5862 PF00293 NUDIX domain Y89_5863 PF13419 Haloacid dehalogenase-like hydrolase Y89_5864 PF01476 LysM domain Y89_5864 PF04972 BON domain Y89_5865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5865 PF03466 LysR substrate binding domain Y89_5866 PF02634 FdhD/NarQ family Y89_5867 PF00384 Molybdopterin oxidoreductase Y89_5867 PF01568 Molydopterin dinucleotide binding domain Y89_5869 PF13488 Y89_5869 Y89_5870 PF02599 Global regulator protein family Y89_5871 PF01817 Chorismate mutase type II Y89_5872 PF03061 Thioesterase superfamily Y89_5873 PF00465 Iron-containing alcohol dehydrogenase Y89_5874 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y89_5874 PF02770 Acyl-CoA dehydrogenase, middle domain Y89_5874 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y89_5874 PF12418 Y89_5874 Y89_5874 PF12806 Y89_5874 Y89_5875 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_5875 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_5876 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5876 PF03466 LysR substrate binding domain Y89_5877 PF00881 Nitroreductase family Y89_5879 PF01293 Phosphoenolpyruvate carboxykinase Y89_5880 PF01430 Hsp33 protein Y89_5881 PF01569 PAP2 superfamily Y89_5882 PF01479 S4 domain Y89_5883 PF05618 Putative ATP-dependant zinc protease Y89_5884 PF08443 RimK-like ATP-grasp domain Y89_5885 PF02016 LD-carboxypeptidase Y89_5886 PF00512 His Kinase A (phospho-acceptor) domain Y89_5886 PF00672 HAMP domain Y89_5886 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_5887 PF00072 Response regulator receiver domain Y89_5887 PF00486 Transcriptional regulatory protein, C terminal Y89_5888 PF00575 S1 RNA binding domain Y89_5888 PF09371 Tex-like protein N-terminal domain Y89_5888 PF12836 Helix-hairpin-helix motif Y89_5888 PF16921 Y89_5888 Y89_5889 PF03061 Thioesterase superfamily Y89_5890 PF04262 Glutamate-cysteine ligase Y89_5891 PF00583 Acetyltransferase (GNAT) family Y89_5891 PF00696 Amino acid kinase family Y89_5892 PF01914 Y89_5892 Y89_5893 PF01546 Peptidase family M20/M25/M40 Y89_5893 PF07687 Peptidase dimerisation domain Y89_5894 PF01384 Y89_5894 Y89_5895 PF01865 Protein of unknown function DUF47 Y89_5896 PF01928 CYTH domain Y89_5897 PF00437 Type II/IV secretion system protein Y89_5897 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Y89_5898 PF01957 NfeD-like C-terminal, partner-binding Y89_5899 PF09498 Y89_5899 Y89_5900 PF02347 Glycine cleavage system P-protein Y89_5901 PF01597 Glycine cleavage H-protein Y89_5902 PF01571 Aminomethyltransferase folate-binding domain Y89_5902 PF08669 Glycine cleavage T-protein C-terminal barrel domain Y89_5903 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5904 PF13343 Bacterial extracellular solute-binding protein Y89_5905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5905 PF03466 LysR substrate binding domain Y89_5906 PF07690 Major Facilitator Superfamily Y89_5908 PF01494 FAD binding domain Y89_5909 PF14539 Domain of unknown function (DUF4442) Y89_5910 PF01494 FAD binding domain Y89_5911 PF00557 Metallopeptidase family M24 Y89_5911 PF05195 Aminopeptidase P, N-terminal domain Y89_5912 PF03695 Uncharacterised protein family (UPF0149) Y89_5914 PF05164 Cell division protein ZapA Y89_5915 PF01812 5-formyltetrahydrofolate cyclo-ligase family Y89_5917 PF01878 EVE domain Y89_5918 PF12698 ABC-2 family transporter protein Y89_5919 PF00005 ABC transporter Y89_5919 PF12698 ABC-2 family transporter protein Y89_5920 PF13437 HlyD family secretion protein Y89_5920 PF13533 Biotin-lipoyl like Y89_5921 PF03748 Y89_5921 Y89_5922 PF00107 Zinc-binding dehydrogenase Y89_5922 PF08240 Alcohol dehydrogenase GroES-like domain Y89_5923 PF07690 Major Facilitator Superfamily Y89_5924 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_5924 PF00175 Oxidoreductase NAD-binding domain Y89_5925 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Y89_5926 PF01757 Y89_5926 Y89_5927 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y89_5927 PF07497 Rho termination factor, RNA-binding domain Y89_5927 PF07498 Rho termination factor, N-terminal domain Y89_5928 PF00085 Thioredoxin Y89_5929 PF02541 Ppx/GppA phosphatase family Y89_5930 PF02503 Polyphosphate kinase middle domain Y89_5930 PF13089 Polyphosphate kinase N-terminal domain Y89_5930 PF13090 Polyphosphate kinase C-terminal domain Y89_5931 PF00490 Delta-aminolevulinic acid dehydratase Y89_5932 PF09335 Y89_5932 Y89_5933 PF01965 DJ-1/PfpI family Y89_5934 PF03061 Thioesterase superfamily Y89_5935 PF02639 Y89_5935 Y89_5936 PF03239 Y89_5936 Y89_5936 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_5937 PF01810 Y89_5937 Y89_5938 PF03741 Y89_5938 Y89_5940 PF00005 ABC transporter Y89_5940 PF12848 ABC transporter Y89_5941 PF09523 Y89_5941 Y89_5943 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y89_5943 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Y89_5944 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Y89_5945 PF02600 Disulfide bond formation protein DsbB Y89_5946 PF07219 Y89_5946 Y89_5947 PF04375 Y89_5947 Y89_5948 PF02602 Uroporphyrinogen-III synthase HemD Y89_5949 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Y89_5949 PF03900 Porphobilinogen deaminase, C-terminal domain Y89_5950 PF00072 Response regulator receiver domain Y89_5950 PF04397 LytTr DNA-binding domain Y89_5951 PF06580 Y89_5951 Y89_5952 PF00206 Lyase Y89_5952 PF14698 Argininosuccinate lyase C-terminal Y89_5955 PF05954 Phage late control gene D protein (GPD) Y89_5956 PF05638 Protein of unknown function (DUF796) Y89_5957 PF01544 CorA-like Mg2+ transporter protein Y89_5960 PF06146 Y89_5960 Y89_5961 PF01295 Y89_5961 Y89_5961 PF12633 Y89_5961 Y89_5963 PF01272 Transcription elongation factor, GreA/GreB, C-term Y89_5963 PF14760 Rnk N-terminus Y89_5964 PF01491 Frataxin-like domain Y89_5965 PF13627 Y89_5965 Y89_5966 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Y89_5966 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Y89_5967 PF01678 Diaminopimelate epimerase Y89_5968 PF04340 Protein of unknown function, DUF484 Y89_5969 PF00589 Phage integrase family Y89_5969 PF02899 Phage integrase, N-terminal SAM-like domain Y89_5970 PF13419 Haloacid dehalogenase-like hydrolase Y89_5971 PF07690 Major Facilitator Superfamily Y89_5972 PF00155 Aminotransferase class I and II Y89_5972 PF00392 Bacterial regulatory proteins, gntR family Y89_5973 PF00419 Fimbrial protein Y89_5975 PF01894 Uncharacterised protein family UPF0047 Y89_5976 PF00909 Ammonium Transporter Family Y89_5977 PF00543 Nitrogen regulatory protein P-II Y89_5978 PF04380 Y89_5978 Y89_5979 PF01078 Magnesium chelatase, subunit ChlI Y89_5979 PF13541 Subunit ChlI of Mg-chelatase Y89_5983 PF13166 Y89_5983 Y89_5984 PF00107 Zinc-binding dehydrogenase Y89_5984 PF08240 Alcohol dehydrogenase GroES-like domain Y89_5985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5985 PF03466 LysR substrate binding domain Y89_5989 PF11902 Y89_5989 Y89_5990 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y89_5991 PF00107 Zinc-binding dehydrogenase Y89_5991 PF08240 Alcohol dehydrogenase GroES-like domain Y89_5992 PF00106 short chain dehydrogenase Y89_5993 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5993 PF03466 LysR substrate binding domain Y89_5994 PF00005 ABC transporter Y89_5995 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein Y89_5996 PF00528 Binding-protein-dependent transport system inner membrane component Y89_5997 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y89_5997 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y89_5998 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_5998 PF03466 LysR substrate binding domain Y89_5999 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_6000 PF00296 Luciferase-like monooxygenase Y89_6001 PF12840 Helix-turn-helix domain Y89_6002 PF07514 Putative helicase Y89_6002 PF07515 Protein of unknown function (DUF1528) Y89_6006 PF00665 Integrase core domain Y89_6007 PF08240 Alcohol dehydrogenase GroES-like domain Y89_6007 PF13602 Zinc-binding dehydrogenase Y89_6008 PF03992 Antibiotic biosynthesis monooxygenase Y89_6009 PF00107 Zinc-binding dehydrogenase Y89_6009 PF08240 Alcohol dehydrogenase GroES-like domain Y89_6010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_6011 PF12835 Integrase Y89_6013 PF09983 Y89_6013 Y89_6013 PF11795 Y89_6013 Y89_6014 PF13555 P-loop containing region of AAA domain Y89_6014 PF13558 Putative exonuclease SbcCD, C subunit Y89_6015 PF13835 Y89_6015 Y89_6016 PF11855 Y89_6016 Y89_6020 PF13391 Y89_6020 Y89_6022 PF00899 ThiF family Y89_6023 PF00929 Exonuclease Y89_6025 PF00589 Phage integrase family Y89_6028 PF01078 Magnesium chelatase, subunit ChlI Y89_6028 PF13335 Y89_6028 Y89_6029 PF02028 BCCT family transporter Y89_6031 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_6031 PF03466 LysR substrate binding domain Y89_6032 PF01554 MatE Y89_6033 PF00563 EAL domain Y89_6033 PF00990 GGDEF domain Y89_6034 PF00580 UvrD/REP helicase N-terminal domain Y89_6034 PF13361 UvrD-like helicase C-terminal domain Y89_6035 PF00205 Thiamine pyrophosphate enzyme, central domain Y89_6035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y89_6035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y89_6036 PF00156 Phosphoribosyl transferase domain Y89_6037 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Y89_6038 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_6039 PF01381 Helix-turn-helix Y89_6039 PF07883 Cupin domain Y89_6040 PF00842 Alanine racemase, C-terminal domain Y89_6040 PF01168 Alanine racemase, N-terminal domain Y89_6041 PF01042 Endoribonuclease L-PSP Y89_6042 PF01266 FAD dependent oxidoreductase Y89_6043 PF07027 Y89_6043 Y89_6044 PF13617 Y89_6044 Y89_6045 PF11739 Y89_6045 Y89_6046 PF01037 AsnC family Y89_6046 PF13412 Winged helix-turn-helix DNA-binding Y89_6047 PF01266 FAD dependent oxidoreductase Y89_6048 PF13091 PLD-like domain Y89_6049 PF07690 Major Facilitator Superfamily Y89_6050 PF00171 Aldehyde dehydrogenase family Y89_6051 PF00202 Aminotransferase class-III Y89_6052 PF05899 Protein of unknown function (DUF861) Y89_6053 PF00471 Ribosomal protein L33 Y89_6054 PF00830 Ribosomal L28 family Y89_6055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y89_6057 PF04002 RadC-like JAB domain Y89_6058 PF02441 Flavoprotein Y89_6058 PF04127 DNA / pantothenate metabolism flavoprotein Y89_6059 PF00692 dUTPase Y89_6060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Y89_6060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Y89_6060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Y89_6060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Y89_6061 PF00696 Amino acid kinase family Y89_6062 PF12625 Y89_6062 Y89_6062 PF12833 Helix-turn-helix domain Y89_6063 PF13557 Y89_6063 Y89_6064 PF01168 Alanine racemase, N-terminal domain Y89_6065 PF01565 FAD binding domain Y89_6065 PF04030 D-arabinono-1,4-lactone oxidase Y89_6066 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_6067 PF03061 Thioesterase superfamily Y89_6069 PF00156 Phosphoribosyl transferase domain Y89_6070 PF03372 Endonuclease/Exonuclease/phosphatase family Y89_6071 PF09685 Y89_6071 Y89_6072 PF01138 3' exoribonuclease family, domain 1 Y89_6072 PF03725 3' exoribonuclease family, domain 2 Y89_6073 PF03755 Y89_6073 Y89_6073 PF08340 Y89_6073 Y89_6074 PF00625 Guanylate kinase Y89_6075 PF01192 RNA polymerase Rpb6 Y89_6076 PF02824 TGS domain Y89_6076 PF04607 Region found in RelA / SpoT proteins Y89_6076 PF13291 ACT domain Y89_6076 PF13328 HD domain Y89_6077 PF01042 Endoribonuclease L-PSP Y89_6079 PF01810 Y89_6079 Y89_6080 PF02311 AraC-like ligand binding domain Y89_6080 PF12833 Helix-turn-helix domain Y89_6081 PF01370 NAD dependent epimerase/dehydratase family Y89_6082 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_6082 PF03466 LysR substrate binding domain Y89_6083 PF00270 DEAD/DEAH box helicase Y89_6083 PF00271 Helicase conserved C-terminal domain Y89_6083 PF17191 Y89_6083 Y89_6084 PF04073 Aminoacyl-tRNA editing domain Y89_6084 PF08668 HDOD domain Y89_6086 PF00216 Bacterial DNA-binding protein Y89_6087 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_6088 PF00301 Rubredoxin Y89_6089 PF00301 Rubredoxin Y89_6090 PF03928 Domain of unknown function (DUF336) Y89_6091 PF02754 Y89_6091 Y89_6091 PF12838 4Fe-4S dicluster domain Y89_6092 PF01565 FAD binding domain Y89_6093 PF01565 FAD binding domain Y89_6093 PF02913 FAD linked oxidases, C-terminal domain Y89_6094 PF00392 Bacterial regulatory proteins, gntR family Y89_6094 PF07729 FCD domain Y89_6095 PF04345 Chorismate lyase Y89_6096 PF01040 UbiA prenyltransferase family Y89_6097 PF03640 Y89_6097 Y89_6098 PF00072 Response regulator receiver domain Y89_6098 PF00486 Transcriptional regulatory protein, C terminal Y89_6099 PF00512 His Kinase A (phospho-acceptor) domain Y89_6099 PF00989 PAS fold Y89_6099 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_6099 PF11808 Y89_6099 Y89_6100 PF00571 CBS domain Y89_6100 PF01595 Y89_6100 Y89_6100 PF03471 Transporter associated domain Y89_6101 PF01551 Peptidase family M23 Y89_6101 PF13511 Y89_6101 Y89_6102 PF00072 Response regulator receiver domain Y89_6103 PF01895 PhoU domain Y89_6104 PF00005 ABC transporter Y89_6105 PF00528 Binding-protein-dependent transport system inner membrane component Y89_6106 PF00528 Binding-protein-dependent transport system inner membrane component Y89_6107 PF12849 PBP superfamily domain Y89_6108 PF00083 Sugar (and other) transporter Y89_6109 PF03061 Thioesterase superfamily Y89_6110 PF00732 GMC oxidoreductase Y89_6110 PF05199 GMC oxidoreductase Y89_6111 PF00171 Aldehyde dehydrogenase family Y89_6112 PF00440 Bacterial regulatory proteins, tetR family Y89_6112 PF13977 Bacterial transcriptional repressor Y89_6113 PF02028 BCCT family transporter Y89_6114 PF00005 ABC transporter Y89_6115 PF00528 Binding-protein-dependent transport system inner membrane component Y89_6116 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y89_6117 PF03313 Y89_6117 Y89_6117 PF03315 Serine dehydratase beta chain Y89_6118 PF01965 DJ-1/PfpI family Y89_6118 PF12833 Helix-turn-helix domain Y89_6120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_6120 PF03466 LysR substrate binding domain Y89_6121 PF03601 Y89_6121 Y89_6122 PF07859 alpha/beta hydrolase fold Y89_6123 PF13279 Thioesterase-like superfamily Y89_6124 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y89_6124 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y89_6125 PF05853 Prokaryotic protein of unknown function (DUF849) Y89_6126 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y89_6127 PF01965 DJ-1/PfpI family Y89_6127 PF12833 Helix-turn-helix domain Y89_6128 PF01546 Peptidase family M20/M25/M40 Y89_6128 PF07687 Peptidase dimerisation domain Y89_6129 PF06267 Family of unknown function (DUF1028) Y89_6130 PF01042 Endoribonuclease L-PSP Y89_6131 PF13738 Pyridine nucleotide-disulphide oxidoreductase Y89_6132 PF13091 PLD-like domain Y89_6132 PF13396 Y89_6132 Y89_6133 PF07080 Protein of unknown function (DUF1348) Y89_6134 PF01244 Membrane dipeptidase (Peptidase family M19) Y89_6136 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y89_6136 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_6137 PF02754 Y89_6137 Y89_6137 PF11982 Y89_6137 Y89_6137 PF13183 4Fe-4S dicluster domain Y89_6138 PF00766 Electron transfer flavoprotein FAD-binding domain Y89_6138 PF01012 Electron transfer flavoprotein domain Y89_6139 PF01012 Electron transfer flavoprotein domain Y89_6141 PF13443 Cro/C1-type HTH DNA-binding domain Y89_6145 PF05164 Cell division protein ZapA Y89_6147 PF03729 Y89_6147 Y89_6149 PF00355 Rieske [2Fe-2S] domain Y89_6149 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Y89_6150 PF00111 2Fe-2S iron-sulfur cluster binding domain Y89_6150 PF00175 Oxidoreductase NAD-binding domain Y89_6150 PF00970 Oxidoreductase FAD-binding domain Y89_6152 PF01212 Beta-eliminating lyase Y89_6154 PF00464 Serine hydroxymethyltransferase Y89_6155 PF01266 FAD dependent oxidoreductase Y89_6156 PF04267 Sarcosine oxidase, delta subunit family Y89_6157 PF01571 Aminomethyltransferase folate-binding domain Y89_6157 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y89_6157 PF08669 Glycine cleavage T-protein C-terminal barrel domain Y89_6157 PF13510 2Fe-2S iron-sulfur cluster binding domain Y89_6158 PF04268 Sarcosine oxidase, gamma subunit family Y89_6159 PF00551 Formyl transferase Y89_6160 PF00107 Zinc-binding dehydrogenase Y89_6160 PF08240 Alcohol dehydrogenase GroES-like domain Y89_6161 PF01263 Aldose 1-epimerase Y89_6162 PF11736 Protein of unknown function (DUF3299) Y89_6163 PF04226 Y89_6163 Y89_6164 PF02222 ATP-grasp domain Y89_6165 PF00731 AIR carboxylase Y89_6166 PF00107 Zinc-binding dehydrogenase Y89_6166 PF08240 Alcohol dehydrogenase GroES-like domain Y89_6167 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_6167 PF03466 LysR substrate binding domain Y89_6168 PF00206 Lyase Y89_6168 PF10415 Fumarase C C-terminus Y89_6169 PF04143 Y89_6169 Y89_6170 PF00155 Aminotransferase class I and II Y89_6170 PF00392 Bacterial regulatory proteins, gntR family Y89_6171 PF00583 Acetyltransferase (GNAT) family Y89_6172 PF13302 Acetyltransferase (GNAT) domain Y89_6173 PF03222 Tryptophan/tyrosine permease family Y89_6174 PF00364 Biotin-requiring enzyme Y89_6174 PF00682 HMGL-like Y89_6174 PF02436 Conserved carboxylase domain Y89_6175 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Y89_6175 PF02785 Biotin carboxylase C-terminal domain Y89_6175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y89_6176 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y89_6176 PF03466 LysR substrate binding domain Y89_6178 PF01380 SIS domain Y89_6178 PF01418 Helix-turn-helix domain, rpiR family Y89_6179 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Y89_6179 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Y89_6180 PF01136 Y89_6180 Y89_6180 PF16325 Y89_6180 Y89_6181 PF11340 Y89_6181 Y89_6183 PF00563 EAL domain Y89_6183 PF00990 GGDEF domain Y89_6183 PF08447 PAS fold Y89_6183 PF13426 PAS domain Y89_6184 PF00580 UvrD/REP helicase N-terminal domain Y89_6184 PF13361 UvrD-like helicase C-terminal domain Y89_6185 PF00892 EamA-like transporter family Y89_6186 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Y89_6186 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Y89_6187 PF06568 Y89_6187 Y89_6188 PF00534 Glycosyl transferases group 1 Y89_6188 PF13439 Glycosyltransferase Family 4 Y89_6189 PF00534 Glycosyl transferases group 1 Y89_6189 PF13439 Glycosyltransferase Family 4 Y89_6190 PF00534 Glycosyl transferases group 1 Y89_6191 PF00005 ABC transporter Y89_6191 PF14524 Wzt C-terminal domain Y89_6192 PF01061 Y89_6192 Y89_6193 PF00483 Nucleotidyl transferase Y89_6193 PF01050 Mannose-6-phosphate isomerase Y89_6194 PF16363 Y89_6194 Y89_6195 PF16363 Y89_6195 Y89_6196 PF13692 Glycosyl transferases group 1 Y89_6198 PF13489 Methyltransferase domain Y89_6199 PF01757 Y89_6199 Y89_6200 PF08241 Methyltransferase domain Y89_6201 PF06568 Y89_6201 Y89_6202 PF09498 Y89_6202 Y89_6203 PF09498 Y89_6203 Y89_6204 PF09498 Y89_6204 Y89_6205 PF13387 Y89_6205 Y89_6206 PF04828 Glutathione-dependent formaldehyde-activating enzyme Y89_6207 PF03547 Y89_6207 Y89_6208 PF09498 Y89_6208 Y89_6209 PF03600 Citrate transporter Y89_6210 PF03741 Y89_6210 Y89_6211 PF00472 RF-1 domain Y89_6212 PF01139 tRNA-splicing ligase RtcB Y89_6214 PF01895 PhoU domain Y89_6214 PF02690 Y89_6214 Y89_6215 PF00675 Insulinase (Peptidase family M16) Y89_6215 PF05193 Peptidase M16 inactive domain Y89_6217 PF07690 Major Facilitator Superfamily Y89_6218 PF11141 Y89_6218 Y89_6219 PF07670 Nucleoside recognition Y89_6220 PF00375 Sodium:dicarboxylate symporter family Y89_6221 PF08816 Inhibitor of vertebrate lysozyme (Ivy) Y89_6222 PF07043 Y89_6222 Y89_6223 PF00072 Response regulator receiver domain Y89_6223 PF00158 Sigma-54 interaction domain Y89_6223 PF02954 Bacterial regulatory protein, Fis family Y89_6224 PF00512 His Kinase A (phospho-acceptor) domain Y89_6224 PF00672 HAMP domain Y89_6224 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_6224 PF08448 PAS fold Y89_6224 PF16767 Y89_6224 Y89_6225 PF01471 Putative peptidoglycan binding domain Y89_6225 PF01510 N-acetylmuramoyl-L-alanine amidase Y89_6226 PF01914 Y89_6226 Y89_6227 PF00990 GGDEF domain Y89_6228 PF03372 Endonuclease/Exonuclease/phosphatase family Y89_6229 PF01323 DSBA-like thioredoxin domain Y89_6230 PF00034 Cytochrome c Y89_6231 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y89_6232 PF01926 50S ribosome-binding GTPase Y89_6233 PF00476 DNA polymerase family A Y89_6233 PF01367 5'-3' exonuclease, C-terminal SAM fold Y89_6233 PF01612 3'-5' exonuclease Y89_6233 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Y89_6234 PF11191 Protein of unknown function (DUF2782) Y89_6235 PF01636 Phosphotransferase enzyme family Y89_6237 PF02867 Ribonucleotide reductase, barrel domain Y89_6238 PF01297 Periplasmic solute binding protein family Y89_6239 PF01475 Ferric uptake regulator family Y89_6240 PF00005 ABC transporter Y89_6241 PF00950 Y89_6241 Y89_6243 PF00005 ABC transporter Y89_6243 PF09383 NIL domain Y89_6244 PF00528 Binding-protein-dependent transport system inner membrane component Y89_6245 PF03180 NLPA lipoprotein Y89_6246 PF01380 SIS domain Y89_6246 PF01418 Helix-turn-helix domain, rpiR family Y89_6247 PF00857 Isochorismatase family Y89_6248 PF00120 Glutamine synthetase, catalytic domain Y89_6248 PF16952 Y89_6248 Y89_6249 PF05013 N-formylglutamate amidohydrolase Y89_6250 PF00324 Amino acid permease Y89_6251 PF00072 Response regulator receiver domain Y89_6251 PF00158 Sigma-54 interaction domain Y89_6251 PF02954 Bacterial regulatory protein, Fis family Y89_6252 PF00512 His Kinase A (phospho-acceptor) domain Y89_6252 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y89_6253 PF12697 Alpha/beta hydrolase family Y89_6254 PF00905 Penicillin binding protein transpeptidase domain Y89_6255 PF11743 Y89_6255 Y89_6256 PF08543 Phosphomethylpyrimidine kinase Y89_6257 PF09335 Y89_6257 Y89_6258 PF00999 Sodium/hydrogen exchanger family Y89_6258 PF02254 TrkA-N domain Y89_6259 PF03061 Thioesterase superfamily Y89_6261 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_6262 PF00120 Glutamine synthetase, catalytic domain Y89_6263 PF00202 Aminotransferase class-III Y89_6264 PF13561 Enoyl-(Acyl carrier protein) reductase Y89_6265 PF00392 Bacterial regulatory proteins, gntR family Y89_6265 PF07729 FCD domain Y89_6266 PF06004 Bacterial protein of unknown function (DUF903) Y89_6267 PF14567 SMI1-KNR4 cell-wall Y89_6268 PF04280 Tim44-like domain Y89_6269 PF00999 Sodium/hydrogen exchanger family Y89_6270 PF07690 Major Facilitator Superfamily Y89_6271 PF03544 Gram-negative bacterial TonB protein C-terminal Y89_6272 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y89_6272 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y89_6274 PF08856 Y89_6274 Y89_6275 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y89_6275 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y89_6276 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y89_6278 PF01520 N-acetylmuramoyl-L-alanine amidase Y89_6278 PF11741 AMIN domain Y89_6279 PF02649 Type I GTP cyclohydrolase folE2 Y89_6280 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_6281 PF01979 Amidohydrolase family Y89_6282 PF00144 Beta-lactamase Y89_6283 PF08905 Y89_6283 Y89_6284 PF06808 Y89_6284 Y89_6285 PF16868 Y89_6285 Y89_6286 PF02353 Mycolic acid cyclopropane synthetase Y89_6287 PF12710 haloacid dehalogenase-like hydrolase Y89_6288 PF07690 Major Facilitator Superfamily Y89_6289 PF01380 SIS domain Y89_6289 PF13522 Glutamine amidotransferase domain Y89_6290 PF00455 Y89_6290 Y89_6290 PF08220 DeoR-like helix-turn-helix domain Y89_6291 PF01551 Peptidase family M23 Y89_6292 PF00132 Bacterial transferase hexapeptide (six repeats) Y89_6292 PF12804 MobA-like NTP transferase domain Y89_6293 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Y89_6293 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Y89_6294 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y89_6294 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y89_6295 PF00231 ATP synthase Y89_6296 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y89_6296 PF00306 ATP synthase alpha/beta chain, C terminal domain Y89_6296 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y89_6297 PF00213 ATP synthase delta (OSCP) subunit Y89_6298 PF00430 ATP synthase B/B' CF(0) Y89_6299 PF00137 ATP synthase subunit C Y89_6300 PF00119 ATP synthase A chain Y89_6301 PF03899 Y89_6301 Y89_6302 PF02195 ParB-like nuclease domain Y89_6303 PF13614 AAA domain Y89_6304 PF02527 rRNA small subunit methyltransferase G Y89_6305 PF01134 Glucose inhibited division protein A Y89_6305 PF13932 GidA associated domain 3 Y89_6307 PF01926 50S ribosome-binding GTPase Y89_6307 PF10396 GTP-binding protein TrmE N-terminus Y89_6307 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE Y89_6308 PF02096 60Kd inner membrane protein Y89_6308 PF14849 YidC periplasmic domain Y89_6309 PF00825 Ribonuclease P Y89_6310 PF00468 Ribosomal protein L34 Y89_6311 PF06834 Y89_6311 Y89_6314 PF07916 Y89_6314 Y89_6316 PF03693 Uncharacterised protein family (UPF0156) Y89_6317 PF05016 Plasmid stabilisation system protein Y89_6320 PF00872 Y89_6320 Y89_6321 PF07514 Putative helicase Y89_6321 PF07515 Protein of unknown function (DUF1528) Y89_6322 PF00589 Phage integrase family Y89_6322 PF02899 Phage integrase, N-terminal SAM-like domain Y89_6323 PF13614 AAA domain Y89_6327 PF10979 Y89_6327 Y89_6328 PF13392 HNH endonuclease Y89_6330 PF00772 DnaB-like helicase N terminal domain Y89_6330 PF03796 DnaB-like helicase C terminal domain Y89_6336 PF04245 Y89_6336 Y89_6337 PF02086 D12 class N6 adenine-specific DNA methyltransferase Y89_6338 PF03869 Arc-like DNA binding domain Y89_6339 PF01316 Arginine repressor, DNA binding domain Y89_6339 PF02195 ParB-like nuclease domain Y89_6340 PF11198 Y89_6340 Y89_6344 PF08900 Y89_6344 Y89_6345 PF11358 Y89_6345 Y89_6346 PF09669 Y89_6346 Y89_6347 PF00436 Single-strand binding protein family Y89_6348 PF01131 DNA topoisomerase Y89_6348 PF01751 Toprim domain Y89_6350 PF00176 SNF2 family N-terminal domain Y89_6350 PF00271 Helicase conserved C-terminal domain Y89_6351 PF01381 Helix-turn-helix Y89_6352 PF10671 Toxin co-regulated pilus biosynthesis protein Q Y89_6353 PF00263 Y89_6353 Y89_6353 PF07655 Y89_6353 Y89_6354 PF06864 Y89_6354 Y89_6356 PF00437 Type II/IV secretion system protein Y89_6357 PF00482 Type II secretion system (T2SS), protein F Y89_6358 PF08805 PilS N terminal Y89_6359 PF00437 Type II/IV secretion system protein Y89_6360 PF04917 Y89_6360 Y89_6361 PF07419 PilM Y89_6362 PF04754 Y89_6362 Y89_6362 PF14261 Y89_6362 Y89_6366 PF12101 Y89_6366 Y89_6371 PF11679 Y89_6371 Y89_6377 PF00271 Helicase conserved C-terminal domain Y89_6377 PF04851 Type III restriction enzyme, res subunit Y89_6382 PF11072 Y89_6382 Y89_6384 PF12696 TraM recognition site of TraD and TraG Y89_6385 PF14348 Y89_6385 Y89_6386 PF13245 Part of AAA domain Y89_6386 PF13361 UvrD-like helicase C-terminal domain Y89_6389 PF09686 Y89_6389 Y89_6390 PF11660 Y89_6390 Y89_6391 PF11190 Y89_6391 Y89_6392 PF11990 Y89_6392 Y89_6393 PF11444 Y89_6393 Y89_6394 PF11920 Y89_6394 Y89_6397 PF01580 FtsK/SpoIIIE family Y89_6397 PF11130 Y89_6397 Y89_6399 PF13462 Thioredoxin Y89_6400 PF00145 C-5 cytosine-specific DNA methylase Y89_6401 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase