Y89_0001 SM00382 ATPases associated with a variety of cellular activities Y89_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Y89_0002 SM00480 DNA polymerase III beta subunit Y89_0004 SM00387 Histidine kinase-like ATPases Y89_0004 SM00433 TopoisomeraseII Y89_0009 SM00487 DEAD-like helicases superfamily Y89_0009 SM00490 helicase superfamily c-terminal domain Y89_0011 SM00563 Phosphate acyltransferases Y89_0014 SM00836 DALR anticodon binding domain Y89_0021 SM00028 Tetratricopeptide repeats Y89_0026 SM00257 Lysin motif Y89_0029 SM00829 Enoylreductase Y89_0041 SM00421 helix_turn_helix, Lux Regulon Y89_0041 SM00448 cheY-homologous receiver domain Y89_0048 SM00912 haemagglutination activity domain Y89_0058 SM00530 Helix-turn-helix XRE-family like proteins Y89_0067 SM00849 Metallo-beta-lactamase superfamily Y89_0079 SM00729 Elongator protein 3, MiaB family, Radical SAM Y89_0083 SM00382 ATPases associated with a variety of cellular activities Y89_0084 SM00220 Serine/Threonine protein kinases, catalytic domain Y89_0084 SM00327 von Willebrand factor (vWF) type A domain Y89_0085 SM00331 Sigma factor PP2C-like phosphatases Y89_0085 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Y89_0091 SM00240 Forkhead associated domain Y89_0100 SM00382 ATPases associated with a variety of cellular activities Y89_0100 SM01086 C-terminal, D2-small domain, of ClpB protein Y89_0113 SM00947 Carbonic anhydrase Y89_0131 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_0131 SM00895 Y89_0131 Y89_0132 SM00895 Y89_0132 Y89_0138 SM00769 Water Stress and Hypersensitive response Y89_0149 SM00382 ATPases associated with a variety of cellular activities Y89_0164 SM00965 Secretin and TonB N terminus short domain Y89_0168 SM00346 helix_turn_helix isocitrate lyase regulation Y89_0175 SM00342 helix_turn_helix, arabinose operon control protein Y89_0181 SM00267 diguanylate cyclase Y89_0184 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_0184 SM00331 Sigma factor PP2C-like phosphatases Y89_0185 SM00448 cheY-homologous receiver domain Y89_0187 SM00138 Methyltransferase, chemotaxis proteins Y89_0188 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_0189 SM00260 Two component signalling adaptor domain Y89_0190 SM00073 Histidine Phosphotransfer domain Y89_0190 SM00260 Two component signalling adaptor domain Y89_0190 SM00387 Histidine kinase-like ATPases Y89_0190 SM01231 Y89_0190 Y89_0191 SM00448 cheY-homologous receiver domain Y89_0192 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_0194 SM00822 Y89_0194 Y89_0196 SM00382 ATPases associated with a variety of cellular activities Y89_0202 SM00014 Acid phosphatase homologues Y89_0207 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Y89_0207 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Y89_0221 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Y89_0230 SM01130 Y89_0230 Y89_0231 SM01007 Class II Aldolase and Adducin N-terminal domain Y89_0232 SM00530 Helix-turn-helix XRE-family like proteins Y89_0233 SM00882 Coenzyme A transferase Y89_0234 SM00882 Coenzyme A transferase Y89_0237 SM00998 Adenylosuccinate lyase C-terminus Y89_0243 SM00346 helix_turn_helix isocitrate lyase regulation Y89_0255 SM00342 helix_turn_helix, arabinose operon control protein Y89_0257 SM00116 Domain in cystathionine beta-synthase and other proteins. Y89_0260 SM00347 helix_turn_helix multiple antibiotic resistance protein Y89_0272 SM00487 DEAD-like helicases superfamily Y89_0285 SM00448 cheY-homologous receiver domain Y89_0286 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_0293 SM00100 Cyclic nucleotide-monophosphate binding domain Y89_0293 SM00419 helix_turn_helix, cAMP Regulatory protein Y89_0297 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Y89_0298 SM00382 ATPases associated with a variety of cellular activities Y89_0303 SM00052 Putative diguanylate phosphodiesterase Y89_0303 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_0303 SM00091 PAS domain Y89_0303 SM00267 diguanylate cyclase Y89_0308 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_0308 SM00091 PAS domain Y89_0308 SM00267 diguanylate cyclase Y89_0314 SM01230 Y89_0314 Y89_0316 SM01230 Y89_0316 Y89_0320 SM00382 ATPases associated with a variety of cellular activities Y89_0324 SM00342 helix_turn_helix, arabinose operon control protein Y89_0329 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Y89_0334 SM00062 Bacterial periplasmic substrate-binding proteins Y89_0346 SM00382 ATPases associated with a variety of cellular activities Y89_0348 SM00869 Autotransporter beta-domain Y89_0358 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y89_0359 SM00091 PAS domain Y89_0359 SM00267 diguanylate cyclase Y89_0378 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Y89_0378 SM01232 Y89_0378 Y89_0379 SM00563 Phosphate acyltransferases Y89_0381 SM00671 Sel1-like repeats. Y89_0384 SM00764 Citrate lyase ligase C-terminal domain Y89_0395 SM00382 ATPases associated with a variety of cellular activities Y89_0395 SM00962 SRP54-type protein, GTPase domain Y89_0395 SM00963 SRP54-type protein, helical bundle domain Y89_0396 SM00382 ATPases associated with a variety of cellular activities Y89_0408 SM00729 Elongator protein 3, MiaB family, Radical SAM Y89_0414 SM01152 Y89_0414 Y89_0418 SM00382 ATPases associated with a variety of cellular activities Y89_0422 SM00116 Domain in cystathionine beta-synthase and other proteins. Y89_0427 SM00732 Likely ribonuclease with RNase H fold. Y89_0431 SM00448 cheY-homologous receiver domain Y89_0433 SM00260 Two component signalling adaptor domain Y89_0434 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_0435 SM00138 Methyltransferase, chemotaxis proteins Y89_0436 SM00073 Histidine Phosphotransfer domain Y89_0436 SM00260 Two component signalling adaptor domain Y89_0436 SM00387 Histidine kinase-like ATPases Y89_0436 SM00448 cheY-homologous receiver domain Y89_0436 SM01231 Y89_0436 Y89_0438 SM00260 Two component signalling adaptor domain Y89_0439 SM00342 helix_turn_helix, arabinose operon control protein Y89_0446 SM00867 YceI-like domain Y89_0447 SM00347 helix_turn_helix multiple antibiotic resistance protein Y89_0451 SM00487 DEAD-like helicases superfamily Y89_0451 SM00490 helicase superfamily c-terminal domain Y89_0455 SM00996 S-adenosyl-L-homocysteine hydrolase Y89_0455 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Y89_0473 SM00244 prohibitin homologues Y89_0474 SM00062 Bacterial periplasmic substrate-binding proteins Y89_0476 SM00487 DEAD-like helicases superfamily Y89_0476 SM00490 helicase superfamily c-terminal domain Y89_0477 SM00357 Cold shock protein domain Y89_0480 SM00382 ATPases associated with a variety of cellular activities Y89_0480 SM01086 C-terminal, D2-small domain, of ClpB protein Y89_0482 SM00563 Phosphate acyltransferases Y89_0484 SM00448 cheY-homologous receiver domain Y89_0484 SM00862 Transcriptional regulatory protein, C terminal Y89_0485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_0485 SM00387 Histidine kinase-like ATPases Y89_0485 SM00388 His Kinase A (phosphoacceptor) domain Y89_0491 SM00965 Secretin and TonB N terminus short domain Y89_0516 SM00878 Biotin carboxylase C-terminal domain Y89_0517 SM00796 Allophanate hydrolase subunit 1 Y89_0518 SM00797 Allophanate hydrolase subunit 2 Y89_0521 SM00729 Elongator protein 3, MiaB family, Radical SAM Y89_0521 SM00876 Biotin and Thiamin Synthesis associated domain Y89_0532 SM00729 Elongator protein 3, MiaB family, Radical SAM Y89_0536 SM00344 helix_turn_helix ASNC type Y89_0546 SM00327 von Willebrand factor (vWF) type A domain Y89_0548 SM00100 Cyclic nucleotide-monophosphate binding domain Y89_0548 SM00419 helix_turn_helix, cAMP Regulatory protein Y89_0555 SM00091 PAS domain Y89_0555 SM00421 helix_turn_helix, Lux Regulon Y89_0557 SM00530 Helix-turn-helix XRE-family like proteins Y89_0569 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Y89_0570 SM00861 Transketolase, pyrimidine binding domain Y89_0573 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y89_0585 SM00342 helix_turn_helix, arabinose operon control protein Y89_0593 SM01276 Y89_0593 Y89_0596 SM00382 ATPases associated with a variety of cellular activities Y89_0599 SM00382 ATPases associated with a variety of cellular activities Y89_0629 SM00028 Tetratricopeptide repeats Y89_0644 SM00530 Helix-turn-helix XRE-family like proteins Y89_0646 SM00507 HNH nucleases Y89_0647 SM00052 Putative diguanylate phosphodiesterase Y89_0647 SM00062 Bacterial periplasmic substrate-binding proteins Y89_0647 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_0647 SM00091 PAS domain Y89_0647 SM00267 diguanylate cyclase Y89_0649 SM00400 zinc finger Y89_0649 SM00493 Y89_0649 Y89_0649 SM00766 DNA primase DnaG DnaB-binding Y89_0653 SM01207 Y89_0653 Y89_0654 SM00905 Dihydroneopterin aldolase Y89_0660 SM00763 PrkA AAA domain Y89_0661 SM00450 Rhodanese Homology Domain Y89_0664 SM00650 Ribosomal RNA adenine dimethylases Y89_0668 SM00507 HNH nucleases Y89_0672 SM00271 DnaJ molecular chaperone homology domain Y89_0674 SM00062 Bacterial periplasmic substrate-binding proteins Y89_0674 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_0674 SM00091 PAS domain Y89_0674 SM00387 Histidine kinase-like ATPases Y89_0675 SM00421 helix_turn_helix, Lux Regulon Y89_0675 SM00448 cheY-homologous receiver domain Y89_0677 SM00382 ATPases associated with a variety of cellular activities Y89_0685 SM00530 Helix-turn-helix XRE-family like proteins Y89_0712 SM00232 JAB/MPN domain Y89_0725 SM00100 Cyclic nucleotide-monophosphate binding domain Y89_0725 SM00419 helix_turn_helix, cAMP Regulatory protein Y89_0730 SM00382 ATPases associated with a variety of cellular activities Y89_0731 SM00822 Y89_0731 Y89_0735 SM00859 Semialdehyde dehydrogenase, NAD binding domain Y89_0747 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Y89_0747 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Y89_0748 SM00649 Ribosomal protein L11/L12 Y89_0753 SM00663 RNA polymerase I subunit A N-terminus Y89_0756 SM00838 Elongation factor G C-terminus Y89_0756 SM00889 Elongation factor G, domain IV Y89_0758 SM01403 Y89_0758 Y89_0762 SM01382 Y89_0762 Y89_0762 SM01383 Y89_0762 Y89_0765 SM00322 K homology RNA-binding domain Y89_0769 SM01374 Y89_0769 Y89_0770 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Y89_0783 SM00363 S4 RNA-binding domain Y89_0783 SM01390 Y89_0783 Y89_0784 SM00662 RNA polymerases D Y89_0786 SM01060 Y89_0786 Y89_0792 SM00830 Chorismate mutase type II Y89_0793 SM00824 Thioesterase Y89_0795 SM00342 helix_turn_helix, arabinose operon control protein Y89_0796 SM00823 Phosphopantetheine attachment site Y89_0799 SM00382 ATPases associated with a variety of cellular activities Y89_0800 SM00382 ATPases associated with a variety of cellular activities Y89_0822 SM00849 Metallo-beta-lactamase superfamily Y89_0825 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_0825 SM00091 PAS domain Y89_0825 SM00387 Histidine kinase-like ATPases Y89_0825 SM00388 His Kinase A (phosphoacceptor) domain Y89_0826 SM00421 helix_turn_helix, Lux Regulon Y89_0826 SM00448 cheY-homologous receiver domain Y89_0827 SM00062 Bacterial periplasmic substrate-binding proteins Y89_0830 SM00382 ATPases associated with a variety of cellular activities Y89_0834 SM01130 Y89_0834 Y89_0837 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_0837 SM00895 Y89_0837 Y89_0838 SM00342 helix_turn_helix, arabinose operon control protein Y89_0841 SM00873 B3/4 domain Y89_0854 SM00965 Secretin and TonB N terminus short domain Y89_0857 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_0860 SM00822 Y89_0860 Y89_0864 SM00382 ATPases associated with a variety of cellular activities Y89_0865 SM00346 helix_turn_helix isocitrate lyase regulation Y89_0868 SM00287 Bacterial SH3 domain homologues Y89_0869 SM00829 Enoylreductase Y89_0871 SM00861 Transketolase, pyrimidine binding domain Y89_0874 SM00822 Y89_0874 Y89_0875 SM00382 ATPases associated with a variety of cellular activities Y89_0879 SM00382 ATPases associated with a variety of cellular activities Y89_0887 SM00347 helix_turn_helix multiple antibiotic resistance protein Y89_0890 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_0902 SM00342 helix_turn_helix, arabinose operon control protein Y89_0905 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y89_0905 SM00387 Histidine kinase-like ATPases Y89_0905 SM00388 His Kinase A (phosphoacceptor) domain Y89_0910 SM00073 Histidine Phosphotransfer domain Y89_0910 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_0910 SM00091 PAS domain Y89_0910 SM00387 Histidine kinase-like ATPases Y89_0910 SM00388 His Kinase A (phosphoacceptor) domain Y89_0910 SM00448 cheY-homologous receiver domain Y89_0910 SM01079 Y89_0910 Y89_0915 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y89_0921 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_0921 SM00387 Histidine kinase-like ATPases Y89_0921 SM00388 His Kinase A (phosphoacceptor) domain Y89_0922 SM00448 cheY-homologous receiver domain Y89_0922 SM00862 Transcriptional regulatory protein, C terminal Y89_0927 SM00829 Enoylreductase Y89_0930 SM00342 helix_turn_helix, arabinose operon control protein Y89_0932 SM00903 Flavin reductase like domain Y89_0935 SM00822 Y89_0935 Y89_0942 SM00912 haemagglutination activity domain Y89_0944 SM00421 helix_turn_helix, Lux Regulon Y89_0944 SM00448 cheY-homologous receiver domain Y89_0946 SM00823 Phosphopantetheine attachment site Y89_0947 SM00530 Helix-turn-helix XRE-family like proteins Y89_0950 SM00421 helix_turn_helix, Lux Regulon Y89_0954 SM00342 helix_turn_helix, arabinose operon control protein Y89_0961 SM00382 ATPases associated with a variety of cellular activities Y89_0980 SM00861 Transketolase, pyrimidine binding domain Y89_0983 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Y89_0987 SM00382 ATPases associated with a variety of cellular activities Y89_0988 SM00091 PAS domain Y89_0988 SM00387 Histidine kinase-like ATPases Y89_0988 SM01080 Y89_0988 Y89_0992 SM00448 cheY-homologous receiver domain Y89_0992 SM00862 Transcriptional regulatory protein, C terminal Y89_1003 SM00382 ATPases associated with a variety of cellular activities Y89_1008 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. Y89_1012 SM00464 Found in ATP-dependent protease La (LON) Y89_1013 SM00014 Acid phosphatase homologues Y89_1025 SM00936 Penicillin-binding protein 5, C-terminal domain Y89_1028 SM00729 Elongator protein 3, MiaB family, Radical SAM Y89_1039 SM00116 Domain in cystathionine beta-synthase and other proteins. Y89_1039 SM01091 Transporter associated domain Y89_1042 SM00729 Elongator protein 3, MiaB family, Radical SAM Y89_1044 SM00671 Sel1-like repeats. Y89_1048 SM00387 Histidine kinase-like ATPases Y89_1048 SM00388 His Kinase A (phosphoacceptor) domain Y89_1048 SM00448 cheY-homologous receiver domain Y89_1058 SM00344 helix_turn_helix ASNC type Y89_1062 SM00487 DEAD-like helicases superfamily Y89_1062 SM00490 helicase superfamily c-terminal domain Y89_1062 SM00847 Helicase associated domain (HA2) Add an annotation Y89_1066 SM00822 Y89_1066 Y89_1073 SM00487 DEAD-like helicases superfamily Y89_1073 SM00490 helicase superfamily c-terminal domain Y89_1075 SM00421 helix_turn_helix, Lux Regulon Y89_1075 SM00448 cheY-homologous receiver domain Y89_1076 SM00052 Putative diguanylate phosphodiesterase Y89_1076 SM00448 cheY-homologous receiver domain Y89_1077 SM00062 Bacterial periplasmic substrate-binding proteins Y89_1077 SM00091 PAS domain Y89_1077 SM00387 Histidine kinase-like ATPases Y89_1077 SM00388 His Kinase A (phosphoacceptor) domain Y89_1077 SM00448 cheY-homologous receiver domain Y89_1083 SM00411 bacterial (prokaryotic) histone like domain Y89_1085 SM00062 Bacterial periplasmic substrate-binding proteins Y89_1086 SM00382 ATPases associated with a variety of cellular activities Y89_1096 SM00342 helix_turn_helix, arabinose operon control protein Y89_1102 SM00421 helix_turn_helix, Lux Regulon Y89_1104 SM00670 Large family of predicted nucleotide-binding domains Y89_1108 SM00852 Probable molybdopterin binding domain Y89_1109 SM00852 Probable molybdopterin binding domain Y89_1122 SM00965 Secretin and TonB N terminus short domain Y89_1125 SM00342 helix_turn_helix, arabinose operon control protein Y89_1133 SM00116 Domain in cystathionine beta-synthase and other proteins. Y89_1133 SM00382 ATPases associated with a variety of cellular activities Y89_1147 SM00421 helix_turn_helix, Lux Regulon Y89_1147 SM00448 cheY-homologous receiver domain Y89_1148 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_1148 SM00387 Histidine kinase-like ATPases Y89_1151 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y89_1156 SM00729 Elongator protein 3, MiaB family, Radical SAM Y89_1159 SM00062 Bacterial periplasmic substrate-binding proteins Y89_1163 SM00487 DEAD-like helicases superfamily Y89_1163 SM00490 helicase superfamily c-terminal domain Y89_1166 SM00062 Bacterial periplasmic substrate-binding proteins Y89_1186 SM00382 ATPases associated with a variety of cellular activities Y89_1196 SM00342 helix_turn_helix, arabinose operon control protein Y89_1201 SM00052 Putative diguanylate phosphodiesterase Y89_1204 SM01323 Y89_1204 Y89_1215 SM00271 DnaJ molecular chaperone homology domain Y89_1219 SM00562 Y89_1219 Y89_1221 SM00028 Tetratricopeptide repeats Y89_1222 SM00530 Helix-turn-helix XRE-family like proteins Y89_1226 SM00564 beta-propeller repeat Y89_1234 SM00917 LeuA allosteric (dimerisation) domain Y89_1244 SM00342 helix_turn_helix, arabinose operon control protein Y89_1256 SM00421 helix_turn_helix, Lux Regulon Y89_1257 SM00116 Domain in cystathionine beta-synthase and other proteins. Y89_1257 SM01240 Y89_1257 Y89_1263 SM00062 Bacterial periplasmic substrate-binding proteins Y89_1264 SM01211 Y89_1264 Y89_1270 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_1270 SM00866 Y89_1270 Y89_1279 SM00116 Domain in cystathionine beta-synthase and other proteins. Y89_1279 SM01091 Transporter associated domain Y89_1281 SM00382 ATPases associated with a variety of cellular activities Y89_1281 SM00962 SRP54-type protein, GTPase domain Y89_1281 SM00963 SRP54-type protein, helical bundle domain Y89_1303 SM01322 Y89_1303 Y89_1312 SM00421 helix_turn_helix, Lux Regulon Y89_1312 SM00448 cheY-homologous receiver domain Y89_1318 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_1318 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_1319 SM00260 Two component signalling adaptor domain Y89_1320 SM00138 Methyltransferase, chemotaxis proteins Y89_1321 SM00260 Two component signalling adaptor domain Y89_1322 SM00073 Histidine Phosphotransfer domain Y89_1322 SM00260 Two component signalling adaptor domain Y89_1322 SM00387 Histidine kinase-like ATPases Y89_1322 SM00448 cheY-homologous receiver domain Y89_1323 SM00448 cheY-homologous receiver domain Y89_1324 SM00267 diguanylate cyclase Y89_1324 SM00448 cheY-homologous receiver domain Y89_1325 SM00937 Y89_1325 Y89_1329 SM01154 Y89_1329 Y89_1333 SM00506 Appr-1"-p processing enzyme Y89_1337 SM00422 helix_turn_helix, mercury resistance Y89_1353 SM00563 Phosphate acyltransferases Y89_1354 SM00382 ATPases associated with a variety of cellular activities Y89_1368 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y89_1377 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y89_1379 SM00935 Outer membrane protein (OmpH-like) Y89_1386 SM00481 DNA polymerase alpha chain like domain Y89_1388 SM00977 TilS substrate C-terminal domain Y89_1391 SM01192 Y89_1391 Y89_1391 SM01193 Y89_1391 Y89_1397 SM00829 Enoylreductase Y89_1403 SM00257 Lysin motif Y89_1406 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Y89_1406 SM00534 ATPase domain of DNA mismatch repair MUTS family Y89_1409 SM00382 ATPases associated with a variety of cellular activities Y89_1412 SM00849 Metallo-beta-lactamase superfamily Y89_1412 SM01027 Beta-Casp domain Y89_1419 SM00382 ATPases associated with a variety of cellular activities Y89_1420 SM01144 Y89_1420 Y89_1422 SM00421 helix_turn_helix, Lux Regulon Y89_1422 SM00448 cheY-homologous receiver domain Y89_1427 SM00421 helix_turn_helix, Lux Regulon Y89_1430 SM00342 helix_turn_helix, arabinose operon control protein Y89_1443 SM00420 helix_turn_helix, Deoxyribose operon repressor Y89_1443 SM01134 Y89_1443 Y89_1455 SM00342 helix_turn_helix, arabinose operon control protein Y89_1459 SM00829 Enoylreductase Y89_1464 SM00354 helix_turn _helix lactose operon repressor Y89_1468 SM00984 UDP binding domain Y89_1482 SM00710 Parallel beta-helix repeats Y89_1482 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses Y89_1484 SM00671 Sel1-like repeats. Y89_1487 SM00984 UDP binding domain Y89_1489 SM00382 ATPases associated with a variety of cellular activities Y89_1492 SM00869 Autotransporter beta-domain Y89_1493 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y89_1499 SM00479 Y89_1499 Y89_1508 SM01236 Y89_1508 Y89_1509 SM01236 Y89_1509 Y89_1510 SM00998 Adenylosuccinate lyase C-terminus Y89_1511 SM00998 Adenylosuccinate lyase C-terminus Y89_1514 SM00478 endonuclease III Y89_1514 SM00525 Y89_1514 Y89_1516 SM00900 Y89_1516 Y89_1529 SM00421 helix_turn_helix, Lux Regulon Y89_1531 SM00062 Bacterial periplasmic substrate-binding proteins Y89_1535 SM00919 Malic enzyme, NAD binding domain Y89_1535 SM01274 Y89_1535 Y89_1540 SM00487 DEAD-like helicases superfamily Y89_1540 SM00490 helicase superfamily c-terminal domain Y89_1544 SM00387 Histidine kinase-like ATPases Y89_1544 SM00388 His Kinase A (phosphoacceptor) domain Y89_1544 SM00448 cheY-homologous receiver domain Y89_1548 SM00347 helix_turn_helix multiple antibiotic resistance protein Y89_1557 SM00062 Bacterial periplasmic substrate-binding proteins Y89_1559 SM00382 ATPases associated with a variety of cellular activities Y89_1561 SM00062 Bacterial periplasmic substrate-binding proteins Y89_1564 SM00382 ATPases associated with a variety of cellular activities Y89_1568 SM00905 Dihydroneopterin aldolase Y89_1577 SM01007 Class II Aldolase and Adducin N-terminal domain Y89_1580 SM00822 Y89_1580 Y89_1584 SM00342 helix_turn_helix, arabinose operon control protein Y89_1587 SM00421 helix_turn_helix, Lux Regulon Y89_1589 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y89_1591 SM00861 Transketolase, pyrimidine binding domain Y89_1600 SM00965 Secretin and TonB N terminus short domain Y89_1602 SM00382 ATPases associated with a variety of cellular activities Y89_1615 SM00382 ATPases associated with a variety of cellular activities Y89_1616 SM00710 Parallel beta-helix repeats Y89_1616 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses Y89_1618 SM00900 Y89_1618 Y89_1625 SM00382 ATPases associated with a variety of cellular activities Y89_1628 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_1628 SM00866 Y89_1628 Y89_1633 SM00382 ATPases associated with a variety of cellular activities Y89_1634 SM00382 ATPases associated with a variety of cellular activities Y89_1636 SM00072 Guanylate kinase homologues. Y89_1637 SM00849 Metallo-beta-lactamase superfamily Y89_1646 SM01012 Y89_1646 Y89_1653 SM01230 Y89_1653 Y89_1659 SM00858 Y89_1659 Y89_1660 SM00260 Two component signalling adaptor domain Y89_1660 SM00448 cheY-homologous receiver domain Y89_1661 SM00138 Methyltransferase, chemotaxis proteins Y89_1663 SM00331 Sigma factor PP2C-like phosphatases Y89_1663 SM00448 cheY-homologous receiver domain Y89_1665 SM00341 Helicase and RNase D C-terminal Y89_1665 SM00487 DEAD-like helicases superfamily Y89_1665 SM00490 helicase superfamily c-terminal domain Y89_1665 SM00956 Y89_1665 Y89_1666 SM00267 diguanylate cyclase Y89_1668 SM00347 helix_turn_helix multiple antibiotic resistance protein Y89_1682 SM00823 Phosphopantetheine attachment site Y89_1687 SM00422 helix_turn_helix, mercury resistance Y89_1695 SM00382 ATPases associated with a variety of cellular activities Y89_1696 SM00062 Bacterial periplasmic substrate-binding proteins Y89_1698 SM00052 Putative diguanylate phosphodiesterase Y89_1698 SM00267 diguanylate cyclase Y89_1701 SM00487 DEAD-like helicases superfamily Y89_1701 SM00490 helicase superfamily c-terminal domain Y89_1715 SM00382 ATPases associated with a variety of cellular activities Y89_1715 SM00487 DEAD-like helicases superfamily Y89_1715 SM00490 helicase superfamily c-terminal domain Y89_1715 SM00847 Helicase associated domain (HA2) Add an annotation Y89_1716 SM00098 Alkaline phosphatase homologues Y89_1724 SM00248 ankyrin repeats Y89_1735 SM00822 Y89_1735 Y89_1740 SM00487 DEAD-like helicases superfamily Y89_1740 SM00490 helicase superfamily c-terminal domain Y89_1741 SM00387 Histidine kinase-like ATPases Y89_1741 SM00388 His Kinase A (phosphoacceptor) domain Y89_1741 SM00448 cheY-homologous receiver domain Y89_1743 SM00342 helix_turn_helix, arabinose operon control protein Y89_1745 SM00563 Phosphate acyltransferases Y89_1746 SM00357 Cold shock protein domain Y89_1753 SM00530 Helix-turn-helix XRE-family like proteins Y89_1755 SM00671 Sel1-like repeats. Y89_1756 SM00052 Putative diguanylate phosphodiesterase Y89_1756 SM00267 diguanylate cyclase Y89_1757 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y89_1757 SM00245 tail specific protease Y89_1758 SM00829 Enoylreductase Y89_1760 SM00382 ATPases associated with a variety of cellular activities Y89_1765 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_1765 SM00866 Y89_1765 Y89_1781 SM00100 Cyclic nucleotide-monophosphate binding domain Y89_1782 SM00479 Y89_1782 Y89_1787 SM00382 ATPases associated with a variety of cellular activities Y89_1795 SM00342 helix_turn_helix, arabinose operon control protein Y89_1798 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Y89_1800 SM00342 helix_turn_helix, arabinose operon control protein Y89_1803 SM00382 ATPases associated with a variety of cellular activities Y89_1809 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_1809 SM00387 Histidine kinase-like ATPases Y89_1809 SM00388 His Kinase A (phosphoacceptor) domain Y89_1811 SM00448 cheY-homologous receiver domain Y89_1811 SM00862 Transcriptional regulatory protein, C terminal Y89_1815 SM00481 DNA polymerase alpha chain like domain Y89_1821 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y89_1824 SM00448 cheY-homologous receiver domain Y89_1824 SM00862 Transcriptional regulatory protein, C terminal Y89_1825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_1825 SM00387 Histidine kinase-like ATPases Y89_1825 SM00388 His Kinase A (phosphoacceptor) domain Y89_1829 SM00382 ATPases associated with a variety of cellular activities Y89_1837 SM00363 S4 RNA-binding domain Y89_1839 SM00267 diguanylate cyclase Y89_1842 SM00346 helix_turn_helix isocitrate lyase regulation Y89_1848 SM00434 DNA Topoisomerase IV Y89_1850 SM00830 Chorismate mutase type II Y89_1854 SM00316 Ribosomal protein S1-like RNA-binding domain Y89_1855 SM00411 bacterial (prokaryotic) histone like domain Y89_1879 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Y89_1881 SM00487 DEAD-like helicases superfamily Y89_1881 SM00490 helicase superfamily c-terminal domain Y89_1901 SM01329 Y89_1901 Y89_1902 SM00859 Semialdehyde dehydrogenase, NAD binding domain Y89_1903 SM00859 Semialdehyde dehydrogenase, NAD binding domain Y89_1904 SM00257 Lysin motif Y89_1925 SM00342 helix_turn_helix, arabinose operon control protein Y89_1941 SM00387 Histidine kinase-like ATPases Y89_1941 SM00388 His Kinase A (phosphoacceptor) domain Y89_1942 SM00448 cheY-homologous receiver domain Y89_1942 SM00862 Transcriptional regulatory protein, C terminal Y89_1945 SM00028 Tetratricopeptide repeats Y89_1946 SM00327 von Willebrand factor (vWF) type A domain Y89_1952 SM00347 helix_turn_helix multiple antibiotic resistance protein Y89_1963 SM00530 Helix-turn-helix XRE-family like proteins Y89_1971 SM00981 Y89_1971 Y89_1974 SM00421 helix_turn_helix, Lux Regulon Y89_1974 SM00448 cheY-homologous receiver domain Y89_1975 SM00073 Histidine Phosphotransfer domain Y89_1975 SM00387 Histidine kinase-like ATPases Y89_1975 SM00388 His Kinase A (phosphoacceptor) domain Y89_1975 SM00448 cheY-homologous receiver domain Y89_1976 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y89_1982 SM00849 Metallo-beta-lactamase superfamily Y89_1990 SM00852 Probable molybdopterin binding domain Y89_1991 SM00852 Probable molybdopterin binding domain Y89_1992 SM00342 helix_turn_helix, arabinose operon control protein Y89_1996 SM00046 Diacylglycerol kinase catalytic domain (presumed) Y89_2000 SM00382 ATPases associated with a variety of cellular activities Y89_2008 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Y89_2008 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Y89_2008 SM00493 Y89_2008 Y89_2017 SM00487 DEAD-like helicases superfamily Y89_2017 SM00490 helicase superfamily c-terminal domain Y89_2017 SM00982 Y89_2017 Y89_2017 SM01058 CarD-like/TRCF domain Y89_2018 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y89_2022 SM00900 Y89_2022 Y89_2033 SM00382 ATPases associated with a variety of cellular activities Y89_2036 SM00849 Metallo-beta-lactamase superfamily Y89_2042 SM00226 Low molecular weight phosphatase family Y89_2044 SM00316 Ribosomal protein S1-like RNA-binding domain Y89_2045 SM00363 S4 RNA-binding domain Y89_2052 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Y89_2053 SM00822 Y89_2053 Y89_2054 SM00823 Phosphopantetheine attachment site Y89_2055 SM00825 Beta-ketoacyl synthase Y89_2064 SM00729 Elongator protein 3, MiaB family, Radical SAM Y89_2068 SM00893 Electron transfer flavoprotein domain Y89_2069 SM00893 Electron transfer flavoprotein domain Y89_2076 SM00833 Cobalamin synthesis protein cobW C-terminal domain Y89_2096 SM00382 ATPases associated with a variety of cellular activities Y89_2099 SM00062 Bacterial periplasmic substrate-binding proteins Y89_2102 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_2102 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_2104 SM00822 Y89_2104 Y89_2105 SM00342 helix_turn_helix, arabinose operon control protein Y89_2107 SM00849 Metallo-beta-lactamase superfamily Y89_2110 SM00382 ATPases associated with a variety of cellular activities Y89_2120 SM00062 Bacterial periplasmic substrate-binding proteins Y89_2123 SM00421 helix_turn_helix, Lux Regulon Y89_2123 SM00448 cheY-homologous receiver domain Y89_2125 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_2131 SM00878 Biotin carboxylase C-terminal domain Y89_2135 SM00822 Y89_2135 Y89_2140 SM00387 Histidine kinase-like ATPases Y89_2141 SM00448 cheY-homologous receiver domain Y89_2146 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Y89_2149 SM00460 Transglutaminase/protease-like homologues Y89_2150 SM00880 Y89_2150 Y89_2152 SM00267 diguanylate cyclase Y89_2155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_2155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_2165 SM00382 ATPases associated with a variety of cellular activities Y89_2170 SM00841 Elongation factor P, C-terminal Y89_2170 SM01185 Y89_2170 Y89_2172 SM00347 helix_turn_helix multiple antibiotic resistance protein Y89_2181 SM00487 DEAD-like helicases superfamily Y89_2181 SM00490 helicase superfamily c-terminal domain Y89_2196 SM00347 helix_turn_helix multiple antibiotic resistance protein Y89_2197 SM00387 Histidine kinase-like ATPases Y89_2197 SM00388 His Kinase A (phosphoacceptor) domain Y89_2197 SM00448 cheY-homologous receiver domain Y89_2211 SM00100 Cyclic nucleotide-monophosphate binding domain Y89_2217 SM00382 ATPases associated with a variety of cellular activities Y89_2219 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_2219 SM00387 Histidine kinase-like ATPases Y89_2219 SM00388 His Kinase A (phosphoacceptor) domain Y89_2220 SM00448 cheY-homologous receiver domain Y89_2220 SM00862 Transcriptional regulatory protein, C terminal Y89_2227 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_2227 SM00866 Y89_2227 Y89_2231 SM00331 Sigma factor PP2C-like phosphatases Y89_2231 SM00448 cheY-homologous receiver domain Y89_2242 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_2250 SM00530 Helix-turn-helix XRE-family like proteins Y89_2260 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y89_2260 SM00267 diguanylate cyclase Y89_2290 SM00318 Staphylococcal nuclease homologues Y89_2300 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Y89_2305 SM00873 B3/4 domain Y89_2305 SM00874 tRNA synthetase B5 domain Y89_2305 SM00896 Ferredoxin-fold anticodon binding domain Y89_2306 SM00411 bacterial (prokaryotic) histone like domain Y89_2307 SM00422 helix_turn_helix, mercury resistance Y89_2315 SM00470 ParB-like nuclease domain Y89_2317 SM00530 Helix-turn-helix XRE-family like proteins Y89_2330 SM00822 Y89_2330 Y89_2340 SM00382 ATPases associated with a variety of cellular activities Y89_2354 SM00382 ATPases associated with a variety of cellular activities Y89_2358 SM00220 Serine/Threonine protein kinases, catalytic domain Y89_2369 SM00422 helix_turn_helix, mercury resistance Y89_2373 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y89_2380 SM00382 ATPases associated with a variety of cellular activities Y89_2383 SM00342 helix_turn_helix, arabinose operon control protein Y89_2391 SM00342 helix_turn_helix, arabinose operon control protein Y89_2399 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_2399 SM00387 Histidine kinase-like ATPases Y89_2399 SM00388 His Kinase A (phosphoacceptor) domain Y89_2400 SM00448 cheY-homologous receiver domain Y89_2400 SM00862 Transcriptional regulatory protein, C terminal Y89_2407 SM00829 Enoylreductase Y89_2410 SM00382 ATPases associated with a variety of cellular activities Y89_2422 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y89_2422 SM00382 ATPases associated with a variety of cellular activities Y89_2431 SM00448 cheY-homologous receiver domain Y89_2431 SM00862 Transcriptional regulatory protein, C terminal Y89_2432 SM00387 Histidine kinase-like ATPases Y89_2434 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_2434 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_2436 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_2436 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_2436 SM01049 Y89_2436 Y89_2446 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y89_2446 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Y89_2447 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Y89_2458 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Y89_2465 SM01329 Y89_2465 Y89_2466 SM00357 Cold shock protein domain Y89_2468 SM00382 ATPases associated with a variety of cellular activities Y89_2468 SM01086 C-terminal, D2-small domain, of ClpB protein Y89_2469 SM00316 Ribosomal protein S1-like RNA-binding domain Y89_2473 SM00843 Y89_2473 Y89_2475 SM00382 ATPases associated with a variety of cellular activities Y89_2485 SM00450 Rhodanese Homology Domain Y89_2489 SM00062 Bacterial periplasmic substrate-binding proteins Y89_2492 SM00062 Bacterial periplasmic substrate-binding proteins Y89_2493 SM00062 Bacterial periplasmic substrate-binding proteins Y89_2494 SM00062 Bacterial periplasmic substrate-binding proteins Y89_2497 SM00421 helix_turn_helix, Lux Regulon Y89_2498 SM00965 Secretin and TonB N terminus short domain Y89_2500 SM00342 helix_turn_helix, arabinose operon control protein Y89_2502 SM00421 helix_turn_helix, Lux Regulon Y89_2502 SM00448 cheY-homologous receiver domain Y89_2503 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Y89_2503 SM00465 GIY-YIG type nucleases (URI domain) Y89_2516 SM00882 Coenzyme A transferase Y89_2517 SM00882 Coenzyme A transferase Y89_2519 SM00878 Biotin carboxylase C-terminal domain Y89_2523 SM00422 helix_turn_helix, mercury resistance Y89_2527 SM00822 Y89_2527 Y89_2532 SM00829 Enoylreductase Y89_2541 SM00342 helix_turn_helix, arabinose operon control protein Y89_2557 SM00822 Y89_2557 Y89_2570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_2570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_2576 SM00346 helix_turn_helix isocitrate lyase regulation Y89_2579 SM00822 Y89_2579 Y89_2601 SM00822 Y89_2601 Y89_2604 SM00062 Bacterial periplasmic substrate-binding proteins Y89_2604 SM00387 Histidine kinase-like ATPases Y89_2604 SM00388 His Kinase A (phosphoacceptor) domain Y89_2604 SM00448 cheY-homologous receiver domain Y89_2605 SM00945 ProQ/FINO family Y89_2610 SM00344 helix_turn_helix ASNC type Y89_2614 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_2614 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_2615 SM00448 cheY-homologous receiver domain Y89_2616 SM00387 Histidine kinase-like ATPases Y89_2620 SM00052 Putative diguanylate phosphodiesterase Y89_2620 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y89_2620 SM00267 diguanylate cyclase Y89_2627 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_2627 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_2634 SM00342 helix_turn_helix, arabinose operon control protein Y89_2636 SM00822 Y89_2636 Y89_2652 SM00195 Dual specificity phosphatase, catalytic domain Y89_2654 SM00563 Phosphate acyltransferases Y89_2668 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_2668 SM00387 Histidine kinase-like ATPases Y89_2668 SM00388 His Kinase A (phosphoacceptor) domain Y89_2669 SM00448 cheY-homologous receiver domain Y89_2669 SM00862 Transcriptional regulatory protein, C terminal Y89_2673 SM00342 helix_turn_helix, arabinose operon control protein Y89_2681 SM00342 helix_turn_helix, arabinose operon control protein Y89_2683 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Y89_2690 SM00364 Leucine-rich repeats, bacterial type Y89_2690 SM00369 Leucine-rich repeats, typical (most populated) subfamily Y89_2694 SM00248 ankyrin repeats Y89_2710 SM00829 Enoylreductase Y89_2712 SM00342 helix_turn_helix, arabinose operon control protein Y89_2713 SM00342 helix_turn_helix, arabinose operon control protein Y89_2721 SM00387 Histidine kinase-like ATPases Y89_2721 SM00388 His Kinase A (phosphoacceptor) domain Y89_2722 SM00448 cheY-homologous receiver domain Y89_2722 SM00862 Transcriptional regulatory protein, C terminal Y89_2735 SM00965 Secretin and TonB N terminus short domain Y89_2739 SM00912 haemagglutination activity domain Y89_2749 SM00382 ATPases associated with a variety of cellular activities Y89_2759 SM00244 prohibitin homologues Y89_2760 SM00244 prohibitin homologues Y89_2761 SM00244 prohibitin homologues Y89_2775 SM00823 Phosphopantetheine attachment site Y89_2776 SM01040 BRO family, N-terminal domain Y89_2788 SM00923 MbtH-like protein Y89_2792 SM00382 ATPases associated with a variety of cellular activities Y89_2799 SM00823 Phosphopantetheine attachment site Y89_2800 SM00823 Phosphopantetheine attachment site Y89_2800 SM00824 Thioesterase Y89_2801 SM00965 Secretin and TonB N terminus short domain Y89_2802 SM00382 ATPases associated with a variety of cellular activities Y89_2809 SM00382 ATPases associated with a variety of cellular activities Y89_2821 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y89_2823 SM00421 helix_turn_helix, Lux Regulon Y89_2823 SM00448 cheY-homologous receiver domain Y89_2829 SM00382 ATPases associated with a variety of cellular activities Y89_2846 SM00382 ATPases associated with a variety of cellular activities Y89_2850 SM00382 ATPases associated with a variety of cellular activities Y89_2850 SM00930 Y89_2850 Y89_2866 SM00382 ATPases associated with a variety of cellular activities Y89_2913 SM00382 ATPases associated with a variety of cellular activities Y89_2917 SM00342 helix_turn_helix, arabinose operon control protein Y89_2922 SM00342 helix_turn_helix, arabinose operon control protein Y89_2925 SM00382 ATPases associated with a variety of cellular activities Y89_2935 SM00354 helix_turn _helix lactose operon repressor Y89_2942 SM00530 Helix-turn-helix XRE-family like proteins Y89_2946 SM00382 ATPases associated with a variety of cellular activities Y89_2952 SM00823 Phosphopantetheine attachment site Y89_2952 SM00824 Thioesterase Y89_2954 SM00060 Fibronectin type 3 domain Y89_2954 SM00495 Chitin-binding domain type 3 Y89_2955 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_2955 SM00866 Y89_2955 Y89_2960 SM00382 ATPases associated with a variety of cellular activities Y89_2961 SM00567 E-Z type HEAT repeats Y89_2964 SM00564 beta-propeller repeat Y89_2973 SM00342 helix_turn_helix, arabinose operon control protein Y89_2975 SM00226 Low molecular weight phosphatase family Y89_2977 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Y89_2978 SM00342 helix_turn_helix, arabinose operon control protein Y89_2979 SM00829 Enoylreductase Y89_2981 SM00422 helix_turn_helix, mercury resistance Y89_2995 SM00354 helix_turn _helix lactose operon repressor Y89_3001 SM00870 Y89_3001 Y89_3006 SM00861 Transketolase, pyrimidine binding domain Y89_3009 SM00344 helix_turn_helix ASNC type Y89_3028 SM00342 helix_turn_helix, arabinose operon control protein Y89_3058 SM00091 PAS domain Y89_3058 SM00382 ATPases associated with a variety of cellular activities Y89_3064 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Y89_3075 SM00062 Bacterial periplasmic substrate-binding proteins Y89_3075 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Y89_3079 SM00052 Putative diguanylate phosphodiesterase Y89_3082 SM00829 Enoylreductase Y89_3087 SM00116 Domain in cystathionine beta-synthase and other proteins. Y89_3093 SM01236 Y89_3093 Y89_3097 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_3097 SM00091 PAS domain Y89_3097 SM00387 Histidine kinase-like ATPases Y89_3097 SM00388 His Kinase A (phosphoacceptor) domain Y89_3097 SM00448 cheY-homologous receiver domain Y89_3112 SM00642 Alpha-amylase domain Y89_3114 SM00642 Alpha-amylase domain Y89_3116 SM00642 Alpha-amylase domain Y89_3117 SM00116 Domain in cystathionine beta-synthase and other proteins. Y89_3118 SM00829 Enoylreductase Y89_3121 SM00155 Phospholipase D. Active site motifs. Y89_3123 SM00642 Alpha-amylase domain Y89_3124 SM00642 Alpha-amylase domain Y89_3125 SM00642 Alpha-amylase domain Y89_3126 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Y89_3130 SM01060 Y89_3130 Y89_3137 SM00822 Y89_3137 Y89_3147 SM00052 Putative diguanylate phosphodiesterase Y89_3154 SM00470 ParB-like nuclease domain Y89_3161 SM00829 Enoylreductase Y89_3163 SM00342 helix_turn_helix, arabinose operon control protein Y89_3170 SM00796 Allophanate hydrolase subunit 1 Y89_3171 SM00797 Allophanate hydrolase subunit 2 Y89_3175 SM00822 Y89_3175 Y89_3178 SM00342 helix_turn_helix, arabinose operon control protein Y89_3185 SM00965 Secretin and TonB N terminus short domain Y89_3192 SM00344 helix_turn_helix ASNC type Y89_3203 SM00052 Putative diguanylate phosphodiesterase Y89_3203 SM00091 PAS domain Y89_3203 SM00267 diguanylate cyclase Y89_3204 SM00838 Elongation factor G C-terminus Y89_3204 SM00889 Elongation factor G, domain IV Y89_3214 SM00382 ATPases associated with a variety of cellular activities Y89_3218 SM00965 Secretin and TonB N terminus short domain Y89_3222 SM00947 Carbonic anhydrase Y89_3223 SM01116 Y89_3223 Y89_3276 SM00342 helix_turn_helix, arabinose operon control protein Y89_3278 SM01234 Y89_3278 Y89_3283 SM01230 Y89_3283 Y89_3290 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_3294 SM00344 helix_turn_helix ASNC type Y89_3300 SM00984 UDP binding domain Y89_3307 SM00422 helix_turn_helix, mercury resistance Y89_3311 SM00878 Biotin carboxylase C-terminal domain Y89_3313 SM00346 helix_turn_helix isocitrate lyase regulation Y89_3318 SM00091 PAS domain Y89_3318 SM00382 ATPases associated with a variety of cellular activities Y89_3323 SM00882 Coenzyme A transferase Y89_3324 SM00882 Coenzyme A transferase Y89_3331 SM00387 Histidine kinase-like ATPases Y89_3331 SM00388 His Kinase A (phosphoacceptor) domain Y89_3331 SM00448 cheY-homologous receiver domain Y89_3334 SM00729 Elongator protein 3, MiaB family, Radical SAM Y89_3341 SM00564 beta-propeller repeat Y89_3343 SM00421 helix_turn_helix, Lux Regulon Y89_3343 SM00448 cheY-homologous receiver domain Y89_3346 SM00421 helix_turn_helix, Lux Regulon Y89_3346 SM00448 cheY-homologous receiver domain Y89_3348 SM00091 PAS domain Y89_3348 SM00387 Histidine kinase-like ATPases Y89_3348 SM00388 His Kinase A (phosphoacceptor) domain Y89_3348 SM00448 cheY-homologous receiver domain Y89_3349 SM00897 FIST N domain Y89_3349 SM01204 Y89_3349 Y89_3360 SM00382 ATPases associated with a variety of cellular activities Y89_3375 SM00354 helix_turn _helix lactose operon repressor Y89_3377 SM00382 ATPases associated with a variety of cellular activities Y89_3379 SM00382 ATPases associated with a variety of cellular activities Y89_3388 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y89_3389 SM01092 CO dehydrogenase flavoprotein C-terminal domain Y89_3391 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_3391 SM00091 PAS domain Y89_3391 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_3413 SM00965 Secretin and TonB N terminus short domain Y89_3426 SM00421 helix_turn_helix, Lux Regulon Y89_3439 SM00486 DNA polymerase type-B family Y89_3441 SM00530 Helix-turn-helix XRE-family like proteins Y89_3445 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y89_3446 SM00530 Helix-turn-helix XRE-family like proteins Y89_3449 SM00382 ATPases associated with a variety of cellular activities Y89_3456 SM00823 Phosphopantetheine attachment site Y89_3460 SM00491 Y89_3460 Y89_3461 SM00990 Y89_3461 Y89_3465 SM00382 ATPases associated with a variety of cellular activities Y89_3473 SM00116 Domain in cystathionine beta-synthase and other proteins. Y89_3476 SM00267 diguanylate cyclase Y89_3477 SM00342 helix_turn_helix, arabinose operon control protein Y89_3484 SM01018 B12 binding domain Y89_3496 SM00829 Enoylreductase Y89_3498 SM00855 Phosphoglycerate mutase family Y89_3502 SM00822 Y89_3502 Y89_3513 SM00479 Y89_3513 Y89_3516 SM00849 Metallo-beta-lactamase superfamily Y89_3517 SM00257 Lysin motif Y89_3522 SM00382 ATPases associated with a variety of cellular activities Y89_3525 SM00411 bacterial (prokaryotic) histone like domain Y89_3526 SM00382 ATPases associated with a variety of cellular activities Y89_3526 SM00464 Found in ATP-dependent protease La (LON) Y89_3527 SM00382 ATPases associated with a variety of cellular activities Y89_3527 SM00994 ClpX C4-type zinc finger Y89_3527 SM01086 C-terminal, D2-small domain, of ClpB protein Y89_3530 SM00448 cheY-homologous receiver domain Y89_3530 SM00862 Transcriptional regulatory protein, C terminal Y89_3531 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_3531 SM00387 Histidine kinase-like ATPases Y89_3531 SM00388 His Kinase A (phosphoacceptor) domain Y89_3537 SM00840 Y89_3537 Y89_3547 SM00448 cheY-homologous receiver domain Y89_3547 SM01012 Y89_3547 Y89_3550 SM00220 Serine/Threonine protein kinases, catalytic domain Y89_3550 SM00331 Sigma factor PP2C-like phosphatases Y89_3550 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Y89_3553 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y89_3572 SM00421 helix_turn_helix, Lux Regulon Y89_3573 SM00421 helix_turn_helix, Lux Regulon Y89_3586 SM00506 Appr-1"-p processing enzyme Y89_3601 SM00460 Transglutaminase/protease-like homologues Y89_3606 SM00052 Putative diguanylate phosphodiesterase Y89_3606 SM00267 diguanylate cyclase Y89_3607 SM01217 Y89_3607 Y89_3620 SM00342 helix_turn_helix, arabinose operon control protein Y89_3636 SM00382 ATPases associated with a variety of cellular activities Y89_3647 SM00478 endonuclease III Y89_3647 SM01009 AlkA N-terminal domain Y89_3651 SM01007 Class II Aldolase and Adducin N-terminal domain Y89_3659 SM00463 Small MutS-related domain Y89_3663 SM00220 Serine/Threonine protein kinases, catalytic domain Y89_3664 SM00331 Sigma factor PP2C-like phosphatases Y89_3664 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Y89_3671 SM00382 ATPases associated with a variety of cellular activities Y89_3672 SM00382 ATPases associated with a variety of cellular activities Y89_3672 SM01086 C-terminal, D2-small domain, of ClpB protein Y89_3681 SM00347 helix_turn_helix multiple antibiotic resistance protein Y89_3686 SM00829 Enoylreductase Y89_3688 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_3688 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_3688 SM01358 Y89_3688 Y89_3690 SM00903 Flavin reductase like domain Y89_3692 SM00450 Rhodanese Homology Domain Y89_3698 SM00448 cheY-homologous receiver domain Y89_3698 SM00862 Transcriptional regulatory protein, C terminal Y89_3699 SM00387 Histidine kinase-like ATPases Y89_3699 SM00388 His Kinase A (phosphoacceptor) domain Y89_3705 SM00346 helix_turn_helix isocitrate lyase regulation Y89_3708 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_3708 SM00895 Y89_3708 Y89_3716 SM00342 helix_turn_helix, arabinose operon control protein Y89_3719 SM00855 Phosphoglycerate mutase family Y89_3724 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_3724 SM00387 Histidine kinase-like ATPases Y89_3724 SM00388 His Kinase A (phosphoacceptor) domain Y89_3724 SM00448 cheY-homologous receiver domain Y89_3726 SM00825 Beta-ketoacyl synthase Y89_3727 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_3727 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_3732 SM00347 helix_turn_helix multiple antibiotic resistance protein Y89_3734 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y89_3736 SM00342 helix_turn_helix, arabinose operon control protein Y89_3739 SM00387 Histidine kinase-like ATPases Y89_3746 SM00881 CoA binding domain Y89_3750 SM00861 Transketolase, pyrimidine binding domain Y89_3756 SM00234 in StAR and phosphatidylcholine transfer protein Y89_3761 SM00479 Y89_3761 Y89_3770 SM01230 Y89_3770 Y89_3776 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_3792 SM00729 Elongator protein 3, MiaB family, Radical SAM Y89_3794 SM00100 Cyclic nucleotide-monophosphate binding domain Y89_3794 SM00419 helix_turn_helix, cAMP Regulatory protein Y89_3801 SM00822 Y89_3801 Y89_3804 SM00493 Y89_3804 Y89_3806 SM00382 ATPases associated with a variety of cellular activities Y89_3809 SM00292 breast cancer carboxy-terminal domain Y89_3809 SM00532 Ligase N family Y89_3810 SM00771 ZipA, C-terminal domain (FtsZ-binding) Y89_3811 SM00968 SMC proteins Flexible Hinge Domain Y89_3812 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_3812 SM00895 Y89_3812 Y89_3814 SM01092 CO dehydrogenase flavoprotein C-terminal domain Y89_3815 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Y89_3818 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_3818 SM00895 Y89_3818 Y89_3833 SM00729 Elongator protein 3, MiaB family, Radical SAM Y89_3848 SM00420 helix_turn_helix, Deoxyribose operon repressor Y89_3848 SM01134 Y89_3848 Y89_3854 SM00421 helix_turn_helix, Lux Regulon Y89_3856 SM00028 Tetratricopeptide repeats Y89_3864 SM00382 ATPases associated with a variety of cellular activities Y89_3875 SM00260 Two component signalling adaptor domain Y89_3876 SM00260 Two component signalling adaptor domain Y89_3880 SM00448 cheY-homologous receiver domain Y89_3881 SM00073 Histidine Phosphotransfer domain Y89_3881 SM00260 Two component signalling adaptor domain Y89_3881 SM00387 Histidine kinase-like ATPases Y89_3881 SM01231 Y89_3881 Y89_3883 SM00448 cheY-homologous receiver domain Y89_3886 SM00382 ATPases associated with a variety of cellular activities Y89_3886 SM00962 SRP54-type protein, GTPase domain Y89_3901 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_3901 SM00387 Histidine kinase-like ATPases Y89_3901 SM00388 His Kinase A (phosphoacceptor) domain Y89_3902 SM00448 cheY-homologous receiver domain Y89_3902 SM00862 Transcriptional regulatory protein, C terminal Y89_3906 SM00052 Putative diguanylate phosphodiesterase Y89_3906 SM00267 diguanylate cyclase Y89_3906 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_3909 SM00421 helix_turn_helix, Lux Regulon Y89_3910 SM00831 Cation transporter/ATPase, N-terminus Y89_3914 SM00028 Tetratricopeptide repeats Y89_3923 SM00382 ATPases associated with a variety of cellular activities Y89_3925 SM01144 Y89_3925 Y89_3926 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_3926 SM00091 PAS domain Y89_3926 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_3934 SM00849 Metallo-beta-lactamase superfamily Y89_3949 SM00878 Biotin carboxylase C-terminal domain Y89_3952 SM00421 helix_turn_helix, Lux Regulon Y89_3952 SM00448 cheY-homologous receiver domain Y89_3953 SM00387 Histidine kinase-like ATPases Y89_3953 SM00388 His Kinase A (phosphoacceptor) domain Y89_3953 SM00448 cheY-homologous receiver domain Y89_3969 SM00342 helix_turn_helix, arabinose operon control protein Y89_3981 SM00825 Beta-ketoacyl synthase Y89_3984 SM00965 Secretin and TonB N terminus short domain Y89_3990 SM00530 Helix-turn-helix XRE-family like proteins Y89_4003 SM00421 helix_turn_helix, Lux Regulon Y89_4008 SM00062 Bacterial periplasmic substrate-binding proteins Y89_4011 SM00382 ATPases associated with a variety of cellular activities Y89_4013 SM00870 Y89_4013 Y89_4014 SM00387 Histidine kinase-like ATPases Y89_4014 SM00388 His Kinase A (phosphoacceptor) domain Y89_4015 SM00382 ATPases associated with a variety of cellular activities Y89_4015 SM00448 cheY-homologous receiver domain Y89_4019 SM01091 Transporter associated domain Y89_4020 SM00822 Y89_4020 Y89_4023 SM00477 DNA/RNA non-specific endonuclease Y89_4023 SM00892 DNA/RNA non-specific endonuclease Y89_4048 SM00965 Secretin and TonB N terminus short domain Y89_4056 SM00341 Helicase and RNase D C-terminal Y89_4056 SM00474 3'-5' exonuclease Y89_4058 SM00450 Rhodanese Homology Domain Y89_4065 SM00347 helix_turn_helix multiple antibiotic resistance protein Y89_4070 SM00855 Phosphoglycerate mutase family Y89_4081 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_4081 SM00895 Y89_4081 Y89_4088 SM00530 Helix-turn-helix XRE-family like proteins Y89_4090 SM00342 helix_turn_helix, arabinose operon control protein Y89_4091 SM00062 Bacterial periplasmic substrate-binding proteins Y89_4095 SM00382 ATPases associated with a variety of cellular activities Y89_4097 SM01130 Y89_4097 Y89_4100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_4100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_4102 SM00235 Zinc-dependent metalloprotease Y89_4105 SM00382 ATPases associated with a variety of cellular activities Y89_4108 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_4108 SM00091 PAS domain Y89_4108 SM00387 Histidine kinase-like ATPases Y89_4108 SM00388 His Kinase A (phosphoacceptor) domain Y89_4108 SM00448 cheY-homologous receiver domain Y89_4118 SM00342 helix_turn_helix, arabinose operon control protein Y89_4124 SM00342 helix_turn_helix, arabinose operon control protein Y89_4131 SM00925 MltA specific insert domain Y89_4144 SM00450 Rhodanese Homology Domain Y89_4157 SM00382 ATPases associated with a variety of cellular activities Y89_4162 SM00271 DnaJ molecular chaperone homology domain Y89_4164 SM00731 SprT homologues. Y89_4171 SM00342 helix_turn_helix, arabinose operon control protein Y89_4172 SM00052 Putative diguanylate phosphodiesterase Y89_4172 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_4172 SM00091 PAS domain Y89_4172 SM00267 diguanylate cyclase Y89_4173 SM00387 Histidine kinase-like ATPases Y89_4173 SM00388 His Kinase A (phosphoacceptor) domain Y89_4174 SM00448 cheY-homologous receiver domain Y89_4174 SM00862 Transcriptional regulatory protein, C terminal Y89_4179 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y89_4194 SM00357 Cold shock protein domain Y89_4195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_4195 SM00387 Histidine kinase-like ATPases Y89_4195 SM00388 His Kinase A (phosphoacceptor) domain Y89_4196 SM00448 cheY-homologous receiver domain Y89_4196 SM00862 Transcriptional regulatory protein, C terminal Y89_4199 SM01321 Y89_4199 Y89_4200 SM01040 BRO family, N-terminal domain Y89_4202 SM00507 HNH nucleases Y89_4210 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_4210 SM00866 Y89_4210 Y89_4215 SM00829 Enoylreductase Y89_4216 SM00421 helix_turn_helix, Lux Regulon Y89_4228 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y89_4232 SM00267 diguanylate cyclase Y89_4232 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_4236 SM00316 Ribosomal protein S1-like RNA-binding domain Y89_4239 SM00382 ATPases associated with a variety of cellular activities Y89_4244 SM00363 S4 RNA-binding domain Y89_4245 SM00342 helix_turn_helix, arabinose operon control protein Y89_4247 SM00267 diguanylate cyclase Y89_4250 SM00382 ATPases associated with a variety of cellular activities Y89_4255 SM00382 ATPases associated with a variety of cellular activities Y89_4255 SM00448 cheY-homologous receiver domain Y89_4256 SM00091 PAS domain Y89_4256 SM00387 Histidine kinase-like ATPases Y89_4256 SM00388 His Kinase A (phosphoacceptor) domain Y89_4257 SM00382 ATPases associated with a variety of cellular activities Y89_4269 SM00047 Lysozyme subfamily 2 Y89_4283 SM00382 ATPases associated with a variety of cellular activities Y89_4284 SM00382 ATPases associated with a variety of cellular activities Y89_4310 SM00491 Y89_4310 Y89_4320 SM00769 Water Stress and Hypersensitive response Y89_4325 SM00953 Y89_4325 Y89_4332 SM00822 Y89_4332 Y89_4339 SM00881 CoA binding domain Y89_4342 SM00346 helix_turn_helix isocitrate lyase regulation Y89_4345 SM00849 Metallo-beta-lactamase superfamily Y89_4347 SM01130 Y89_4347 Y89_4357 SM00849 Metallo-beta-lactamase superfamily Y89_4388 SM00382 ATPases associated with a variety of cellular activities Y89_4389 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Y89_4394 SM00357 Cold shock protein domain Y89_4416 SM00347 helix_turn_helix multiple antibiotic resistance protein Y89_4425 SM00954 Region found in RelA / SpoT proteins Y89_4429 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_4429 SM00387 Histidine kinase-like ATPases Y89_4429 SM00388 His Kinase A (phosphoacceptor) domain Y89_4430 SM00448 cheY-homologous receiver domain Y89_4430 SM00862 Transcriptional regulatory protein, C terminal Y89_4431 SM00073 Histidine Phosphotransfer domain Y89_4431 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_4431 SM00387 Histidine kinase-like ATPases Y89_4431 SM00388 His Kinase A (phosphoacceptor) domain Y89_4431 SM00448 cheY-homologous receiver domain Y89_4443 SM00729 Elongator protein 3, MiaB family, Radical SAM Y89_4446 SM00116 Domain in cystathionine beta-synthase and other proteins. Y89_4446 SM00924 MgtE intracellular N domain Y89_4453 SM00530 Helix-turn-helix XRE-family like proteins Y89_4456 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Y89_4466 SM00342 helix_turn_helix, arabinose operon control protein Y89_4467 SM00382 ATPases associated with a variety of cellular activities Y89_4471 SM00062 Bacterial periplasmic substrate-binding proteins Y89_4486 SM00091 PAS domain Y89_4486 SM00382 ATPases associated with a variety of cellular activities Y89_4495 SM00342 helix_turn_helix, arabinose operon control protein Y89_4497 SM00829 Enoylreductase Y89_4499 SM00052 Putative diguanylate phosphodiesterase Y89_4499 SM00091 PAS domain Y89_4499 SM00267 diguanylate cyclase Y89_4500 SM00382 ATPases associated with a variety of cellular activities Y89_4502 SM00450 Rhodanese Homology Domain Y89_4513 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_4513 SM00091 PAS domain Y89_4513 SM00267 diguanylate cyclase Y89_4513 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_4526 SM00563 Phosphate acyltransferases Y89_4528 SM00849 Metallo-beta-lactamase superfamily Y89_4529 SM00342 helix_turn_helix, arabinose operon control protein Y89_4550 SM00644 Y89_4550 Y89_4558 SM00487 DEAD-like helicases superfamily Y89_4558 SM00490 helicase superfamily c-terminal domain Y89_4560 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_4560 SM00895 Y89_4560 Y89_4566 SM00342 helix_turn_helix, arabinose operon control protein Y89_4578 SM00342 helix_turn_helix, arabinose operon control protein Y89_4579 SM00382 ATPases associated with a variety of cellular activities Y89_4579 SM00464 Found in ATP-dependent protease La (LON) Y89_4588 SM00358 Double-stranded RNA binding motif Y89_4588 SM00535 Ribonuclease III family Y89_4592 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y89_4602 SM00387 Histidine kinase-like ATPases Y89_4602 SM00388 His Kinase A (phosphoacceptor) domain Y89_4603 SM00448 cheY-homologous receiver domain Y89_4603 SM00862 Transcriptional regulatory protein, C terminal Y89_4609 SM00986 Uracil DNA glycosylase superfamily Y89_4609 SM00987 UreE urease accessory protein, C-terminal domain Y89_4611 SM00342 helix_turn_helix, arabinose operon control protein Y89_4619 SM00849 Metallo-beta-lactamase superfamily Y89_4628 SM00363 S4 RNA-binding domain Y89_4643 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Y89_4643 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Y89_4643 SM00493 Y89_4643 Y89_4656 SM00487 DEAD-like helicases superfamily Y89_4683 SM00966 SpoVT / AbrB like domain Y89_4688 SM00857 Resolvase, N terminal domain Y89_4694 SM00857 Resolvase, N terminal domain Y89_4705 SM00422 helix_turn_helix, mercury resistance Y89_4709 SM00422 helix_turn_helix, mercury resistance Y89_4714 SM00487 DEAD-like helicases superfamily Y89_4714 SM00490 helicase superfamily c-terminal domain Y89_4717 SM00382 ATPases associated with a variety of cellular activities Y89_4732 SM00342 helix_turn_helix, arabinose operon control protein Y89_4741 SM00560 LamG-like jellyroll fold domain Y89_4744 SM00912 haemagglutination activity domain Y89_4747 SM00382 ATPases associated with a variety of cellular activities Y89_4759 SM00965 Secretin and TonB N terminus short domain Y89_4764 SM00481 DNA polymerase alpha chain like domain Y89_4772 SM00342 helix_turn_helix, arabinose operon control protein Y89_4774 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_4777 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_4777 SM00091 PAS domain Y89_4777 SM00387 Histidine kinase-like ATPases Y89_4777 SM00388 His Kinase A (phosphoacceptor) domain Y89_4780 SM00421 helix_turn_helix, Lux Regulon Y89_4780 SM00448 cheY-homologous receiver domain Y89_4789 SM00858 Y89_4789 Y89_4791 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_4791 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_4792 SM00382 ATPases associated with a variety of cellular activities Y89_4793 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_4793 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_4794 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_4794 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_4801 SM00479 Y89_4801 Y89_4807 SM00382 ATPases associated with a variety of cellular activities Y89_4817 SM00267 diguanylate cyclase Y89_4824 SM00155 Phospholipase D. Active site motifs. Y89_4825 SM00867 YceI-like domain Y89_4826 SM00346 helix_turn_helix isocitrate lyase regulation Y89_4830 SM00867 YceI-like domain Y89_4833 SM00849 Metallo-beta-lactamase superfamily Y89_4836 SM00563 Phosphate acyltransferases Y89_4839 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Y89_4844 SM00899 Y89_4844 Y89_4868 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_4868 SM00387 Histidine kinase-like ATPases Y89_4868 SM00388 His Kinase A (phosphoacceptor) domain Y89_4869 SM00448 cheY-homologous receiver domain Y89_4869 SM00862 Transcriptional regulatory protein, C terminal Y89_4875 SM00883 Chaperonin 10 Kd subunit Y89_4878 SM00822 Y89_4878 Y89_4885 SM00267 diguanylate cyclase Y89_4885 SM00448 cheY-homologous receiver domain Y89_4887 SM00091 PAS domain Y89_4887 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_4887 SM00387 Histidine kinase-like ATPases Y89_4887 SM00388 His Kinase A (phosphoacceptor) domain Y89_4892 SM00957 SecA DEAD-like domain Y89_4892 SM00958 SecA preprotein cross-linking domain Y89_4896 SM00864 Tubulin/FtsZ family, GTPase domain Y89_4896 SM00865 Tubulin/FtsZ family, C-terminal domain Y89_4897 SM00842 Cell division protein FtsA Y89_4915 SM00749 bacterial OsmY and nodulation domain Y89_4925 SM00342 helix_turn_helix, arabinose operon control protein Y89_4935 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y89_4945 SM00382 ATPases associated with a variety of cellular activities Y89_4947 SM00116 Domain in cystathionine beta-synthase and other proteins. Y89_4951 SM00382 ATPases associated with a variety of cellular activities Y89_4967 SM00316 Ribosomal protein S1-like RNA-binding domain Y89_4974 SM00845 GatB domain Y89_4979 SM01359 Y89_4979 Y89_4979 SM01360 Y89_4979 Y89_4983 SM00448 cheY-homologous receiver domain Y89_4984 SM00387 Histidine kinase-like ATPases Y89_4984 SM00388 His Kinase A (phosphoacceptor) domain Y89_4991 SM00382 ATPases associated with a variety of cellular activities Y89_4992 SM00382 ATPases associated with a variety of cellular activities Y89_4994 SM00344 helix_turn_helix ASNC type Y89_4995 SM00797 Allophanate hydrolase subunit 2 Y89_4996 SM00796 Allophanate hydrolase subunit 1 Y89_5001 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Y89_5002 SM00671 Sel1-like repeats. Y89_5006 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_5006 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_5008 SM00644 Y89_5008 Y89_5052 SM00912 haemagglutination activity domain Y89_5071 SM00470 ParB-like nuclease domain Y89_5079 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Y89_5079 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Y89_5079 SM00493 Y89_5079 Y89_5082 SM00487 DEAD-like helicases superfamily Y89_5082 SM00490 helicase superfamily c-terminal domain Y89_5107 SM00487 DEAD-like helicases superfamily Y89_5148 SM00382 ATPases associated with a variety of cellular activities Y89_5148 SM01086 C-terminal, D2-small domain, of ClpB protein Y89_5153 SM00091 PAS domain Y89_5153 SM00387 Histidine kinase-like ATPases Y89_5153 SM00388 His Kinase A (phosphoacceptor) domain Y89_5154 SM00382 ATPases associated with a variety of cellular activities Y89_5154 SM00448 cheY-homologous receiver domain Y89_5168 SM00904 Riboflavin kinase Y89_5172 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Y89_5188 SM00382 ATPases associated with a variety of cellular activities Y89_5189 SM00244 prohibitin homologues Y89_5195 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y89_5201 SM00382 ATPases associated with a variety of cellular activities Y89_5202 SM00382 ATPases associated with a variety of cellular activities Y89_5209 SM00052 Putative diguanylate phosphodiesterase Y89_5209 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_5209 SM00091 PAS domain Y89_5209 SM00267 diguanylate cyclase Y89_5212 SM00833 Cobalamin synthesis protein cobW C-terminal domain Y89_5217 SM00382 ATPases associated with a variety of cellular activities Y89_5220 SM00248 ankyrin repeats Y89_5221 SM01060 Y89_5221 Y89_5234 SM00912 haemagglutination activity domain Y89_5242 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_5242 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_5259 SM00972 Spore Coat Protein U domain Y89_5260 SM00972 Spore Coat Protein U domain Y89_5261 SM00972 Spore Coat Protein U domain Y89_5264 SM00972 Spore Coat Protein U domain Y89_5270 SM00422 helix_turn_helix, mercury resistance Y89_5276 SM00937 Y89_5276 Y89_5278 SM00028 Tetratricopeptide repeats Y89_5285 SM00530 Helix-turn-helix XRE-family like proteins Y89_5287 SM00947 Carbonic anhydrase Y89_5316 SM00100 Cyclic nucleotide-monophosphate binding domain Y89_5318 SM00382 ATPases associated with a variety of cellular activities Y89_5338 SM00091 PAS domain Y89_5338 SM00387 Histidine kinase-like ATPases Y89_5338 SM00388 His Kinase A (phosphoacceptor) domain Y89_5339 SM00382 ATPases associated with a variety of cellular activities Y89_5339 SM00448 cheY-homologous receiver domain Y89_5352 SM00749 bacterial OsmY and nodulation domain Y89_5353 SM00316 Ribosomal protein S1-like RNA-binding domain Y89_5353 SM00322 K homology RNA-binding domain Y89_5354 SM01387 Y89_5354 Y89_5358 SM00316 Ribosomal protein S1-like RNA-binding domain Y89_5363 SM00382 ATPases associated with a variety of cellular activities Y89_5365 SM01103 Y89_5365 Y89_5368 SM00851 MGS-like domain Y89_5368 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Y89_5370 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Y89_5372 SM00271 DnaJ molecular chaperone homology domain Y89_5381 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_5381 SM00895 Y89_5381 Y89_5388 SM00448 cheY-homologous receiver domain Y89_5388 SM00862 Transcriptional regulatory protein, C terminal Y89_5389 SM00387 Histidine kinase-like ATPases Y89_5389 SM00388 His Kinase A (phosphoacceptor) domain Y89_5390 SM00422 helix_turn_helix, mercury resistance Y89_5393 SM00090 RIO-like kinase Y89_5394 SM00448 cheY-homologous receiver domain Y89_5394 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y89_5397 SM00344 helix_turn_helix ASNC type Y89_5399 SM00822 Y89_5399 Y89_5400 SM00342 helix_turn_helix, arabinose operon control protein Y89_5418 SM00421 helix_turn_helix, Lux Regulon Y89_5469 SM00530 Helix-turn-helix XRE-family like proteins Y89_5494 SM00831 Cation transporter/ATPase, N-terminus Y89_5501 SM00822 Y89_5501 Y89_5513 SM00267 diguanylate cyclase Y89_5513 SM00448 cheY-homologous receiver domain Y89_5514 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_5518 SM00878 Biotin carboxylase C-terminal domain Y89_5518 SM01209 Y89_5518 Y89_5523 SM00798 AICARFT/IMPCHase bienzyme Y89_5523 SM00851 MGS-like domain Y89_5524 SM01209 Y89_5524 Y89_5524 SM01210 Y89_5524 Y89_5525 SM00387 Histidine kinase-like ATPases Y89_5525 SM00388 His Kinase A (phosphoacceptor) domain Y89_5525 SM00448 cheY-homologous receiver domain Y89_5531 SM00382 ATPases associated with a variety of cellular activities Y89_5547 SM00422 helix_turn_helix, mercury resistance Y89_5547 SM00871 Bacterial transcription activator, effector binding domain Y89_5554 SM00448 cheY-homologous receiver domain Y89_5554 SM00862 Transcriptional regulatory protein, C terminal Y89_5555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_5555 SM00387 Histidine kinase-like ATPases Y89_5555 SM00388 His Kinase A (phosphoacceptor) domain Y89_5560 SM00988 UreE urease accessory protein, N-terminal domain Y89_5562 SM00382 ATPases associated with a variety of cellular activities Y89_5566 SM00965 Secretin and TonB N terminus short domain Y89_5576 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_5576 SM00895 Y89_5576 Y89_5577 SM00822 Y89_5577 Y89_5579 SM00382 ATPases associated with a variety of cellular activities Y89_5580 SM00382 ATPases associated with a variety of cellular activities Y89_5585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_5585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_5594 SM00257 Lysin motif Y89_5596 SM00460 Transglutaminase/protease-like homologues Y89_5598 SM00729 Elongator protein 3, MiaB family, Radical SAM Y89_5599 SM00267 diguanylate cyclase Y89_5600 SM01005 Alanine racemase, C-terminal domain Y89_5606 SM00967 RNA 2'-O ribose methyltransferase substrate binding Y89_5607 SM00316 Ribosomal protein S1-like RNA-binding domain Y89_5607 SM00357 Cold shock protein domain Y89_5607 SM00955 Y89_5607 Y89_5608 SM00788 Adenylosuccinate synthetase Y89_5611 SM00244 prohibitin homologues Y89_5612 SM00244 prohibitin homologues Y89_5616 SM00853 MutL C terminal dimerisation domain Y89_5616 SM01340 Y89_5616 Y89_5617 SM00257 Lysin motif Y89_5617 SM00646 Y89_5617 Y89_5621 SM00479 Y89_5621 Y89_5626 SM00450 Rhodanese Homology Domain Y89_5629 SM00052 Putative diguanylate phosphodiesterase Y89_5629 SM00267 diguanylate cyclase Y89_5634 SM00434 DNA Topoisomerase IV Y89_5637 SM00387 Histidine kinase-like ATPases Y89_5637 SM00433 TopoisomeraseII Y89_5648 SM00881 CoA binding domain Y89_5652 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_5652 SM00387 Histidine kinase-like ATPases Y89_5652 SM00388 His Kinase A (phosphoacceptor) domain Y89_5652 SM00448 cheY-homologous receiver domain Y89_5653 SM00062 Bacterial periplasmic substrate-binding proteins Y89_5654 SM00448 cheY-homologous receiver domain Y89_5654 SM00862 Transcriptional regulatory protein, C terminal Y89_5658 SM00530 Helix-turn-helix XRE-family like proteins Y89_5668 SM00382 ATPases associated with a variety of cellular activities Y89_5689 SM00052 Putative diguanylate phosphodiesterase Y89_5689 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y89_5689 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_5689 SM00091 PAS domain Y89_5689 SM00267 diguanylate cyclase Y89_5693 SM01091 Transporter associated domain Y89_5704 SM00342 helix_turn_helix, arabinose operon control protein Y89_5712 SM00965 Secretin and TonB N terminus short domain Y89_5716 SM00842 Cell division protein FtsA Y89_5718 SM00919 Malic enzyme, NAD binding domain Y89_5718 SM01274 Y89_5718 Y89_5720 SM00318 Staphylococcal nuclease homologues Y89_5722 SM00487 DEAD-like helicases superfamily Y89_5722 SM00490 helicase superfamily c-terminal domain Y89_5723 SM00836 DALR anticodon binding domain Y89_5723 SM01016 Arginyl tRNA synthetase N terminal dom Y89_5726 SM00382 ATPases associated with a variety of cellular activities Y89_5726 SM01086 C-terminal, D2-small domain, of ClpB protein Y89_5744 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y89_5744 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_5744 SM01358 Y89_5744 Y89_5746 SM00382 ATPases associated with a variety of cellular activities Y89_5748 SM00062 Bacterial periplasmic substrate-binding proteins Y89_5748 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Y89_5754 SM00062 Bacterial periplasmic substrate-binding proteins Y89_5758 SM00671 Sel1-like repeats. Y89_5759 SM00671 Sel1-like repeats. Y89_5760 SM00155 Phospholipase D. Active site motifs. Y89_5776 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_5776 SM00866 Y89_5776 Y89_5783 SM00869 Autotransporter beta-domain Y89_5787 SM00422 helix_turn_helix, mercury resistance Y89_5789 SM00981 Y89_5789 Y89_5790 SM01230 Y89_5790 Y89_5795 SM00091 PAS domain Y89_5795 SM00387 Histidine kinase-like ATPases Y89_5795 SM00388 His Kinase A (phosphoacceptor) domain Y89_5796 SM00382 ATPases associated with a variety of cellular activities Y89_5796 SM00448 cheY-homologous receiver domain Y89_5802 SM00450 Rhodanese Homology Domain Y89_5806 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y89_5806 SM00245 tail specific protease Y89_5809 SM00062 Bacterial periplasmic substrate-binding proteins Y89_5821 SM00478 endonuclease III Y89_5826 SM00382 ATPases associated with a variety of cellular activities Y89_5827 SM00062 Bacterial periplasmic substrate-binding proteins Y89_5831 SM00347 helix_turn_helix multiple antibiotic resistance protein Y89_5851 SM00387 Histidine kinase-like ATPases Y89_5851 SM00388 His Kinase A (phosphoacceptor) domain Y89_5852 SM00382 ATPases associated with a variety of cellular activities Y89_5852 SM00448 cheY-homologous receiver domain Y89_5860 SM00825 Beta-ketoacyl synthase Y89_5864 SM00257 Lysin motif Y89_5871 SM00830 Chorismate mutase type II Y89_5882 SM00363 S4 RNA-binding domain Y89_5886 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_5886 SM00387 Histidine kinase-like ATPases Y89_5886 SM00388 His Kinase A (phosphoacceptor) domain Y89_5887 SM00448 cheY-homologous receiver domain Y89_5887 SM00862 Transcriptional regulatory protein, C terminal Y89_5888 SM00316 Ribosomal protein S1-like RNA-binding domain Y89_5888 SM00732 Likely ribonuclease with RNase H fold. Y89_5896 SM01118 Y89_5896 Y89_5897 SM00382 ATPases associated with a variety of cellular activities Y89_5911 SM01011 Aminopeptidase P, N-terminal domain Y89_5919 SM00382 ATPases associated with a variety of cellular activities Y89_5922 SM00829 Enoylreductase Y89_5927 SM00357 Cold shock protein domain Y89_5927 SM00382 ATPases associated with a variety of cellular activities Y89_5927 SM00959 Rho termination factor, N-terminal domain Y89_5931 SM01004 Delta-aminolevulinic acid dehydratase Y89_5940 SM00382 ATPases associated with a variety of cellular activities Y89_5950 SM00448 cheY-homologous receiver domain Y89_5950 SM00850 LytTr DNA-binding domain Y89_5964 SM01219 Y89_5964 Y89_5972 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_5977 SM00938 Nitrogen regulatory protein P-II Y89_5979 SM00382 ATPases associated with a variety of cellular activities Y89_5984 SM00829 Enoylreductase Y89_5991 SM00829 Enoylreductase Y89_5992 SM00822 Y89_5992 Y89_5994 SM00382 ATPases associated with a variety of cellular activities Y89_6001 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Y89_6007 SM00829 Enoylreductase Y89_6009 SM00829 Enoylreductase Y89_6023 SM00479 Y89_6023 Y89_6033 SM00052 Putative diguanylate phosphodiesterase Y89_6033 SM00267 diguanylate cyclase Y89_6039 SM00530 Helix-turn-helix XRE-family like proteins Y89_6040 SM01005 Alanine racemase, C-terminal domain Y89_6046 SM00344 helix_turn_helix ASNC type Y89_6048 SM00155 Phospholipase D. Active site motifs. Y89_6062 SM00342 helix_turn_helix, arabinose operon control protein Y89_6074 SM00072 Guanylate kinase homologues. Y89_6075 SM01409 Y89_6075 Y89_6076 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y89_6076 SM00954 Region found in RelA / SpoT proteins Y89_6080 SM00342 helix_turn_helix, arabinose operon control protein Y89_6083 SM00487 DEAD-like helicases superfamily Y89_6083 SM00490 helicase superfamily c-terminal domain Y89_6086 SM00411 bacterial (prokaryotic) histone like domain Y89_6094 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_6094 SM00895 Y89_6094 Y89_6098 SM00448 cheY-homologous receiver domain Y89_6098 SM00862 Transcriptional regulatory protein, C terminal Y89_6099 SM00091 PAS domain Y89_6099 SM00387 Histidine kinase-like ATPases Y89_6099 SM00388 His Kinase A (phosphoacceptor) domain Y89_6100 SM00116 Domain in cystathionine beta-synthase and other proteins. Y89_6100 SM01091 Transporter associated domain Y89_6102 SM00448 cheY-homologous receiver domain Y89_6104 SM00382 ATPases associated with a variety of cellular activities Y89_6114 SM00382 ATPases associated with a variety of cellular activities Y89_6118 SM00342 helix_turn_helix, arabinose operon control protein Y89_6127 SM00342 helix_turn_helix, arabinose operon control protein Y89_6132 SM00155 Phospholipase D. Active site motifs. Y89_6135 SM00989 Y89_6135 Y89_6138 SM00893 Electron transfer flavoprotein domain Y89_6139 SM00893 Electron transfer flavoprotein domain Y89_6141 SM00530 Helix-turn-helix XRE-family like proteins Y89_6165 SM01001 AIR carboxylase Y89_6166 SM00829 Enoylreductase Y89_6170 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_6175 SM00878 Biotin carboxylase C-terminal domain Y89_6183 SM00052 Putative diguanylate phosphodiesterase Y89_6183 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y89_6183 SM00091 PAS domain Y89_6183 SM00267 diguanylate cyclase Y89_6191 SM00382 ATPases associated with a variety of cellular activities Y89_6223 SM00382 ATPases associated with a variety of cellular activities Y89_6223 SM00448 cheY-homologous receiver domain Y89_6224 SM00091 PAS domain Y89_6224 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y89_6224 SM00387 Histidine kinase-like ATPases Y89_6224 SM00388 His Kinase A (phosphoacceptor) domain Y89_6225 SM00644 Y89_6225 Y89_6227 SM00267 diguanylate cyclase Y89_6233 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Y89_6233 SM00474 3'-5' exonuclease Y89_6233 SM00475 5'-3' exonuclease Y89_6233 SM00482 DNA polymerase A domain Y89_6240 SM00382 ATPases associated with a variety of cellular activities Y89_6243 SM00382 ATPases associated with a variety of cellular activities Y89_6243 SM00930 Y89_6243 Y89_6248 SM01230 Y89_6248 Y89_6251 SM00382 ATPases associated with a variety of cellular activities Y89_6251 SM00448 cheY-homologous receiver domain Y89_6252 SM00387 Histidine kinase-like ATPases Y89_6252 SM00388 His Kinase A (phosphoacceptor) domain Y89_6261 SM00822 Y89_6261 Y89_6262 SM01230 Y89_6262 Y89_6264 SM00822 Y89_6264 Y89_6265 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y89_6265 SM00895 Y89_6265 Y89_6267 SM00860 SMI1 / KNR4 family Y89_6268 SM00978 Y89_6268 Y89_6272 SM00833 Cobalamin synthesis protein cobW C-terminal domain Y89_6275 SM00833 Cobalamin synthesis protein cobW C-terminal domain Y89_6278 SM00646 Y89_6278 Y89_6286 SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. Y89_6290 SM00420 helix_turn_helix, Deoxyribose operon repressor Y89_6290 SM01134 Y89_6290 Y89_6294 SM00382 ATPases associated with a variety of cellular activities Y89_6302 SM00470 ParB-like nuclease domain Y89_6305 SM01228 Y89_6305 Y89_6339 SM00470 ParB-like nuclease domain Y89_6348 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Y89_6348 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Y89_6348 SM00493 Y89_6348 Y89_6350 SM00487 DEAD-like helicases superfamily Y89_6350 SM00490 helicase superfamily c-terminal domain Y89_6377 SM00487 DEAD-like helicases superfamily